Query 012654
Match_columns 459
No_of_seqs 198 out of 1492
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:55:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 4.9E-30 1.1E-34 221.2 2.3 110 71-185 1-114 (114)
2 PF00954 S_locus_glycop: S-loc 99.9 5.8E-27 1.2E-31 200.9 10.8 108 211-318 1-110 (110)
3 cd00028 B_lectin Bulb-type man 99.9 4.2E-25 9.2E-30 191.0 14.8 114 32-153 2-116 (116)
4 smart00108 B_lectin Bulb-type 99.9 6E-24 1.3E-28 183.2 14.2 112 32-152 2-114 (114)
5 PF08276 PAN_2: PAN-like domai 99.7 7.2E-17 1.6E-21 125.6 5.9 66 336-401 1-66 (66)
6 cd01098 PAN_AP_plant Plant PAN 99.5 3.4E-14 7.4E-19 114.9 8.2 80 333-418 2-84 (84)
7 cd00129 PAN_APPLE PAN/APPLE-li 99.5 4.6E-14 1E-18 113.8 6.4 72 336-417 5-80 (80)
8 smart00108 B_lectin Bulb-type 98.7 4.3E-08 9.3E-13 84.3 8.8 88 90-214 23-112 (114)
9 cd00028 B_lectin Bulb-type man 98.7 9.4E-08 2E-12 82.5 8.5 88 91-215 24-114 (116)
10 smart00473 PAN_AP divergent su 98.6 1.9E-07 4E-12 73.7 7.6 72 340-416 4-77 (78)
11 PF01453 B_lectin: D-mannose b 98.5 2E-06 4.4E-11 74.1 12.0 100 38-154 12-114 (114)
12 cd01100 APPLE_Factor_XI_like S 97.2 0.00049 1.1E-08 54.3 4.3 50 345-397 9-58 (73)
13 PF00024 PAN_1: PAN domain Thi 91.9 0.21 4.6E-06 38.9 3.8 57 341-400 3-60 (79)
14 smart00223 APPLE APPLE domain. 85.6 1.3 2.8E-05 35.6 4.2 50 345-395 6-56 (79)
15 PF14295 PAN_4: PAN domain; PD 84.1 1 2.2E-05 32.1 2.7 24 361-384 15-38 (51)
16 smart00605 CW CW domain. 82.6 6.6 0.00014 32.2 7.4 55 361-419 21-76 (94)
17 PF08277 PAN_3: PAN-like domai 79.3 7.7 0.00017 29.7 6.3 52 360-416 18-70 (71)
18 cd00053 EGF Epidermal growth f 75.9 2.1 4.7E-05 27.3 2.0 29 288-316 2-31 (36)
19 cd01099 PAN_AP_HGF Subfamily o 73.1 12 0.00026 29.8 6.0 36 361-398 24-61 (80)
20 PF09064 Tme5_EGF_like: Thromb 69.9 2.7 5.8E-05 28.1 1.2 19 299-317 11-29 (34)
21 PRK11138 outer membrane biogen 62.6 25 0.00053 36.4 7.4 52 94-149 127-186 (394)
22 PF07974 EGF_2: EGF-like domai 61.8 6.5 0.00014 25.9 1.9 24 292-316 6-29 (32)
23 PF07645 EGF_CA: Calcium-bindi 60.5 3.9 8.5E-05 28.4 0.7 31 287-317 4-36 (42)
24 PF01683 EB: EB module; Inter 60.1 8.2 0.00018 27.9 2.4 31 285-318 18-49 (52)
25 PF12661 hEGF: Human growth fa 59.8 2.5 5.3E-05 22.2 -0.3 10 307-316 1-10 (13)
26 TIGR03300 assembly_YfgL outer 56.5 41 0.00089 34.3 7.8 20 95-114 73-93 (377)
27 smart00179 EGF_CA Calcium-bind 55.5 9.6 0.00021 25.0 2.0 29 287-315 4-33 (39)
28 PRK11138 outer membrane biogen 55.4 50 0.0011 34.1 8.2 20 94-113 301-321 (394)
29 KOG4649 PQQ (pyrrolo-quinoline 52.2 57 0.0012 32.4 7.3 46 70-115 167-217 (354)
30 TIGR03300 assembly_YfgL outer 52.1 61 0.0013 33.1 8.2 20 93-112 285-305 (377)
31 PF12662 cEGF: Complement Clr- 51.6 9.2 0.0002 23.6 1.2 11 307-317 3-13 (24)
32 PF13360 PQQ_2: PQQ-like domai 50.3 62 0.0014 30.1 7.4 75 71-149 12-102 (238)
33 PF13360 PQQ_2: PQQ-like domai 49.7 34 0.00074 31.9 5.5 50 96-149 2-62 (238)
34 cd00054 EGF_CA Calcium-binding 46.3 16 0.00036 23.4 2.0 30 287-316 4-34 (38)
35 PF00008 EGF: EGF-like domain 42.9 7.3 0.00016 25.4 -0.2 24 292-315 4-29 (32)
36 PF00954 S_locus_glycop: S-loc 42.7 75 0.0016 26.6 6.0 58 240-301 42-101 (110)
37 PF12947 EGF_3: EGF domain; I 42.1 5.6 0.00012 26.9 -0.9 25 291-315 5-30 (36)
38 PF01436 NHL: NHL repeat; Int 39.4 52 0.0011 20.6 3.4 22 89-110 5-26 (28)
39 smart00181 EGF Epidermal growt 37.6 26 0.00056 22.5 1.9 24 292-316 6-30 (35)
40 cd00216 PQQ_DH Dehydrogenases 35.1 1.1E+02 0.0025 32.7 7.3 75 71-149 38-136 (488)
41 cd05845 Ig2_L1-CAM_like Second 34.9 65 0.0014 26.7 4.2 33 70-103 32-64 (95)
42 PF07172 GRP: Glycine rich pro 32.1 29 0.00063 28.9 1.7 18 1-18 1-18 (95)
43 PHA02887 EGF-like protein; Pro 28.7 58 0.0013 28.2 2.9 28 287-315 85-117 (126)
44 KOG0291 WD40-repeat-containing 28.3 9.5E+02 0.021 27.6 15.2 85 88-199 353-449 (893)
45 KOG4289 Cadherin EGF LAG seven 21.9 51 0.0011 39.9 1.8 42 291-332 1244-1286(2531)
46 smart00564 PQQ beta-propeller 20.7 1.8E+02 0.0038 18.1 3.6 19 94-112 13-32 (33)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.96 E-value=4.9e-30 Score=221.23 Aligned_cols=110 Identities=55% Similarity=0.829 Sum_probs=80.6
Q ss_pred CCeEEEEcCCCCCCCC--CCeEEEEeeCCcEEEEeCCCcEEEee-cCCCCC-CCcEEEEecCCCEEEEEeeecCCCCeee
Q 012654 71 PETIVWVANRNSPILD--PSAVLTVSSNGNLVLLNVTKGIIWSS-NISRKV-ENPVAQLQDTGNLVLVDVIRKNTSESYL 146 (459)
Q Consensus 71 ~~t~VW~Anr~~pv~~--~~~~L~l~~~GnLvl~d~~g~~vWss-~~~~~~-~~~~a~L~dsGNLVl~~~~~~~~~~~~l 146 (459)
++|+||+|||+.|+.. ...+|.|+.||+|+|++..+.++|++ ++.+.. .+..|+|+|+|||||++. .+.+|
T Consensus 1 ~~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~-----~~~~l 75 (114)
T PF01453_consen 1 PRTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDS-----SGNVL 75 (114)
T ss_dssp ---------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEET-----TSEEE
T ss_pred CcccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEee-----cceEE
Confidence 3689999999999953 24789999999999999999999999 554322 478999999999999986 47899
Q ss_pred EeeecCCCCCCCCCCeEeeeccCCceeEEEeecCCCCCC
Q 012654 147 WQSFDYPSDTLLPGMKVGWNLKTGVEWYLTSWRSADDPS 185 (459)
Q Consensus 147 WqSFD~PTDTLLPGqkL~~~~~tg~~~~L~Sw~s~~dps 185 (459)
||||||||||+||||+|+.+..+|.+..|+||++.+|||
T Consensus 76 W~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 76 WQSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp EESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred EeecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 999999999999999999987777667899999999996
No 2
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.94 E-value=5.8e-27 Score=200.88 Aligned_cols=108 Identities=43% Similarity=0.944 Sum_probs=102.3
Q ss_pred EEeCCCCCcceeccCCCC-cceeeEEEeeeCCeeEEEEEecCCCcEEEEEECCCccEEEEEeeccCCceeEeecCCc-cC
Q 012654 211 FCTGPWSGVAFVAAPSYT-NFLYNQELAHNQDEIYFSYESYNSPSIMMLKLNPSGTVQRLIWNERNAAWDVVYSAPN-VC 288 (459)
Q Consensus 211 w~sg~w~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~Ld~dG~lr~y~w~~~~~~W~~~~~~p~-~C 288 (459)
||+|+|+|..|+++|+|. ..++.+.|+.++++++++|.+.+.+.++|++|+++|++++|.|.+.++.|..+|.+|. +|
T Consensus 1 wrsG~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~~~~~~W~~~~~~p~d~C 80 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWNESTQSWSVFWSAPKDQC 80 (110)
T ss_pred CCccccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEecCCCcEEEEEEecccCC
Confidence 899999999999999998 6778899999999999999988888999999999999999999999999999999999 99
Q ss_pred CCCcCCCCCccccCCCCCccccCCCCcccC
Q 012654 289 GVYGKCGANSICILDKGPNCECLKGFKLKS 318 (459)
Q Consensus 289 dv~g~CG~~giC~~~~~~~C~C~~GF~p~~ 318 (459)
|+|+.||+||+|+.+..+.|+||+||+|++
T Consensus 81 d~y~~CG~~g~C~~~~~~~C~Cl~GF~P~n 110 (110)
T PF00954_consen 81 DVYGFCGPNGICNSNNSPKCSCLPGFEPKN 110 (110)
T ss_pred CCccccCCccEeCCCCCCceECCCCcCCCc
Confidence 999999999999988788999999999974
No 3
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.93 E-value=4.2e-25 Score=191.03 Aligned_cols=114 Identities=48% Similarity=0.764 Sum_probs=98.8
Q ss_pred CcccCCCeEEeCCCeeEEEeeCCCCCCCceEEEEEeeC-CCCeEEEEcCCCCCCCCCCeEEEEeeCCcEEEEeCCCcEEE
Q 012654 32 RSIRDGEKLVSSSQTFELGFFSPGNSRYSKYLGIWYKK-SPETIVWVANRNSPILDPSAVLTVSSNGNLVLLNVTKGIIW 110 (459)
Q Consensus 32 ~~L~~~~~L~S~~g~F~lgF~~~~~~~~~~~l~I~y~~-~~~t~VW~Anr~~pv~~~~~~L~l~~~GnLvl~d~~g~~vW 110 (459)
+.|..|++|+|+++.|++|||...... ..+++|||.+ + .++||.|||+.|. ...+.|.|++||+|+|+|.+|.++|
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q~-~dgnlv~~~~~~-~~~vW~snt~~~~-~~~~~l~l~~dGnLvl~~~~g~~vW 78 (116)
T cd00028 2 NPLSSGQTLVSSGSLFELGFFKLIMQS-RDYNLILYKGSS-RTVVWVANRDNPS-GSSCTLTLQSDGNLVIYDGSGTVVW 78 (116)
T ss_pred cCcCCCCEEEeCCCcEEEecccCCCCC-CeEEEEEEeCCC-CeEEEECCCCCCC-CCCEEEEEecCCCeEEEcCCCcEEE
Confidence 568889999999999999999986532 2889999987 5 7899999999884 4568899999999999999999999
Q ss_pred eecCCCCCCCcEEEEecCCCEEEEEeeecCCCCeeeEeeecCC
Q 012654 111 SSNISRKVENPVAQLQDTGNLVLVDVIRKNTSESYLWQSFDYP 153 (459)
Q Consensus 111 ss~~~~~~~~~~a~L~dsGNLVl~~~~~~~~~~~~lWqSFD~P 153 (459)
++++.+.....+|+|+|+|||||++.+ +.+||||||||
T Consensus 79 ~S~~~~~~~~~~~~L~ddGnlvl~~~~-----~~~~W~Sf~~P 116 (116)
T cd00028 79 SSNTTRVNGNYVLVLLDDGNLVLYDSD-----GNFLWQSFDYP 116 (116)
T ss_pred EecccCCCCceEEEEeCCCCEEEECCC-----CCEEEcCCCCC
Confidence 999874234678999999999999874 68999999999
No 4
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.91 E-value=6e-24 Score=183.22 Aligned_cols=112 Identities=47% Similarity=0.770 Sum_probs=97.6
Q ss_pred CcccCCCeEEeCCCeeEEEeeCCCCCCCceEEEEEeeC-CCCeEEEEcCCCCCCCCCCeEEEEeeCCcEEEEeCCCcEEE
Q 012654 32 RSIRDGEKLVSSSQTFELGFFSPGNSRYSKYLGIWYKK-SPETIVWVANRNSPILDPSAVLTVSSNGNLVLLNVTKGIIW 110 (459)
Q Consensus 32 ~~L~~~~~L~S~~g~F~lgF~~~~~~~~~~~l~I~y~~-~~~t~VW~Anr~~pv~~~~~~L~l~~~GnLvl~d~~g~~vW 110 (459)
+.|..++.|+|+++.|++|||..... ..+++|||.. + .++||+|||+.|+.. ++.|.|++||+|+|+|.+|.++|
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q--~dgnlV~~~~~~-~~~vW~snt~~~~~~-~~~l~l~~dGnLvl~~~~g~~vW 77 (114)
T smart00108 2 NTLSSGQTLVSGNSLFELGFFTLIMQ--NDYNLILYKSSS-RTVVWVANRDNPVSD-SCTLTLQSDGNLVLYDGDGRVVW 77 (114)
T ss_pred cccCCCCEEecCCCcEeeeccccCCC--CCEEEEEEECCC-CcEEEECCCCCCCCC-CEEEEEeCCCCEEEEeCCCCEEE
Confidence 56788999999999999999988643 5788899987 5 789999999999764 48899999999999999999999
Q ss_pred eecCCCCCCCcEEEEecCCCEEEEEeeecCCCCeeeEeeecC
Q 012654 111 SSNISRKVENPVAQLQDTGNLVLVDVIRKNTSESYLWQSFDY 152 (459)
Q Consensus 111 ss~~~~~~~~~~a~L~dsGNLVl~~~~~~~~~~~~lWqSFD~ 152 (459)
++++..+....+|+|+|+|||||++.. +++|||||||
T Consensus 78 ~S~t~~~~~~~~~~L~ddGnlvl~~~~-----~~~~W~Sf~~ 114 (114)
T smart00108 78 SSNTTGANGNYVLVLLDDGNLVIYDSD-----GNFLWQSFDY 114 (114)
T ss_pred EecccCCCCceEEEEeCCCCEEEECCC-----CCEEeCCCCC
Confidence 999863344678999999999999874 6799999997
No 5
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.67 E-value=7.2e-17 Score=125.63 Aligned_cols=66 Identities=53% Similarity=1.192 Sum_probs=56.0
Q ss_pred ccCCCcEEEEccccCCCCcccccccCCCHHHHHHHHhcCCCeEeEeeccCCCCcceEeecccccee
Q 012654 336 CKSGDQFIKLDGIKAPDLLQVSVNDNMNLKQCEAECLKNCTCRAYAYSNLTEGSGCLMWFGDLIDI 401 (459)
Q Consensus 336 C~~~~~F~~l~~v~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~y~~~~~g~gC~~w~~~L~~~ 401 (459)
|+.+|+|+++++|++|+.+......++++++|+++||+||||+||+|.+..++++|++|+++|+|+
T Consensus 1 C~~~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 1 CGSGDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGDLVDL 66 (66)
T ss_pred CcCCCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCEeecC
Confidence 445689999999999998766555568999999999999999999998543456799999999885
No 6
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.52 E-value=3.4e-14 Score=114.86 Aligned_cols=80 Identities=36% Similarity=0.821 Sum_probs=64.7
Q ss_pred CccccCC---CcEEEEccccCCCCcccccccCCCHHHHHHHHhcCCCeEeEeeccCCCCcceEeeccccceeeeecCCCC
Q 012654 333 SSYCKSG---DQFIKLDGIKAPDLLQVSVNDNMNLKQCEAECLKNCTCRAYAYSNLTEGSGCLMWFGDLIDISKTLGNFT 409 (459)
Q Consensus 333 ~l~C~~~---~~F~~l~~v~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~y~~~~~g~gC~~w~~~L~~~~~~~~~~~ 409 (459)
+++|... +.|+++.++++|+..... ...++++|+++||+||+|+||+|.+ ++++|++|...+.+.+.... .
T Consensus 2 ~~~C~~~~~~~~f~~~~~~~~~~~~~~~--~~~s~~~C~~~Cl~nCsC~a~~~~~--~~~~C~~~~~~~~~~~~~~~--~ 75 (84)
T cd01098 2 PLNCGGDGSTDGFLKLPDVKLPDNASAI--TAISLEECREACLSNCSCTAYAYNN--GSGGCLLWNGLLNNLRSLSS--G 75 (84)
T ss_pred CcccCCCCCCCEEEEeCCeeCCCchhhh--ccCCHHHHHHHHhcCCCcceeeecC--CCCeEEEEeceecceEeecC--C
Confidence 4567543 689999999999876542 5678999999999999999999974 34569999999999777544 5
Q ss_pred CceEEEEEe
Q 012654 410 GQSVYIRVP 418 (459)
Q Consensus 410 ~~~~yirv~ 418 (459)
+..+||||+
T Consensus 76 ~~~~yiKv~ 84 (84)
T cd01098 76 GGTLYLRLA 84 (84)
T ss_pred CcEEEEEeC
Confidence 689999985
No 7
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.49 E-value=4.6e-14 Score=113.77 Aligned_cols=72 Identities=19% Similarity=0.397 Sum_probs=61.3
Q ss_pred ccCCCcEEEEccccCCCCcccccccCCCHHHHHHHHhc---CCCeEeEeeccCCCCcceEeecccc-ceeeeecCCCCCc
Q 012654 336 CKSGDQFIKLDGIKAPDLLQVSVNDNMNLKQCEAECLK---NCTCRAYAYSNLTEGSGCLMWFGDL-IDISKTLGNFTGQ 411 (459)
Q Consensus 336 C~~~~~F~~l~~v~~p~~~~~~~~~~~s~~~C~~~Cl~---nCsC~a~~y~~~~~g~gC~~w~~~L-~~~~~~~~~~~~~ 411 (459)
|..+..|+++.++++|++.. .++++|+++|++ ||||+||+|.+. +.+|++|+++| +++++... .+.
T Consensus 5 ~~~~g~fl~~~~~klpd~~~------~s~~eC~~~Cl~~~~nCsC~Aya~~~~--~~gC~~W~~~l~~d~~~~~~--~g~ 74 (80)
T cd00129 5 CKSAGTTLIKIALKIKTTKA------NTADECANRCEKNGLPFSCKAFVFAKA--RKQCLWFPFNSMSGVRKEFS--HGF 74 (80)
T ss_pred eecCCeEEEeecccCCcccc------cCHHHHHHHHhcCCCCCCceeeeccCC--CCCeEEecCcchhhHHhccC--CCc
Confidence 44457899999999998754 589999999999 999999999753 45799999999 99988766 789
Q ss_pred eEEEEE
Q 012654 412 SVYIRV 417 (459)
Q Consensus 412 ~~yirv 417 (459)
++|||.
T Consensus 75 ~Ly~r~ 80 (80)
T cd00129 75 DLYENK 80 (80)
T ss_pred eeEeEC
Confidence 999984
No 8
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.74 E-value=4.3e-08 Score=84.34 Aligned_cols=88 Identities=23% Similarity=0.258 Sum_probs=63.5
Q ss_pred EEEEeeCCcEEEEeCC-CcEEEeecCCCC-CCCcEEEEecCCCEEEEEeeecCCCCeeeEeeecCCCCCCCCCCeEeeec
Q 012654 90 VLTVSSNGNLVLLNVT-KGIIWSSNISRK-VENPVAQLQDTGNLVLVDVIRKNTSESYLWQSFDYPSDTLLPGMKVGWNL 167 (459)
Q Consensus 90 ~L~l~~~GnLvl~d~~-g~~vWss~~~~~-~~~~~a~L~dsGNLVl~~~~~~~~~~~~lWqSFD~PTDTLLPGqkL~~~~ 167 (459)
.+.++.||+||+++.. +.++|++++... .....+.|+++|||||++.+ +.++|+|= +
T Consensus 23 ~~~~q~dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~-----g~~vW~S~--t-------------- 81 (114)
T smart00108 23 TLIMQNDYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGD-----GRVVWSSN--T-------------- 81 (114)
T ss_pred ccCCCCCEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCC-----CCEEEEec--c--------------
Confidence 3556789999999865 579999997643 22368999999999999873 67899981 0
Q ss_pred cCCceeEEEeecCCCCCCCeeeEEEeccCCcceEEEecCCeeeEEeC
Q 012654 168 KTGVEWYLTSWRSADDPSPGNFTSRLDIHVLPEICIYNGSVKYFCTG 214 (459)
Q Consensus 168 ~tg~~~~L~Sw~s~~dps~G~fsl~l~~~g~~~~~~~~g~~~yw~sg 214 (459)
....|.+.+.|+++|+.+++-. ..++.|.+.
T Consensus 82 ---------------~~~~~~~~~~L~ddGnlvl~~~-~~~~~W~Sf 112 (114)
T smart00108 82 ---------------TGANGNYVLVLLDDGNLVIYDS-DGNFLWQSF 112 (114)
T ss_pred ---------------cCCCCceEEEEeCCCCEEEECC-CCCEEeCCC
Confidence 0134568899999997655422 245788764
No 9
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.66 E-value=9.4e-08 Score=82.51 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=63.9
Q ss_pred EEEee-CCcEEEEeCC-CcEEEeecCCCC-CCCcEEEEecCCCEEEEEeeecCCCCeeeEeeecCCCCCCCCCCeEeeec
Q 012654 91 LTVSS-NGNLVLLNVT-KGIIWSSNISRK-VENPVAQLQDTGNLVLVDVIRKNTSESYLWQSFDYPSDTLLPGMKVGWNL 167 (459)
Q Consensus 91 L~l~~-~GnLvl~d~~-g~~vWss~~~~~-~~~~~a~L~dsGNLVl~~~~~~~~~~~~lWqSFD~PTDTLLPGqkL~~~~ 167 (459)
+.++. ||+||+++.. +.++|++++... .....+.|+++|||||++.+ +.++|+|--.
T Consensus 24 ~~~q~~dgnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~-----g~~vW~S~~~--------------- 83 (116)
T cd00028 24 LIMQSRDYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGS-----GTVVWSSNTT--------------- 83 (116)
T ss_pred CCCCCCeEEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcCC-----CcEEEEeccc---------------
Confidence 44565 9999999765 579999997642 34568999999999999873 6789998310
Q ss_pred cCCceeEEEeecCCCCCCCeeeEEEeccCCcceEEEecCCeeeEEeCC
Q 012654 168 KTGVEWYLTSWRSADDPSPGNFTSRLDIHVLPEICIYNGSVKYFCTGP 215 (459)
Q Consensus 168 ~tg~~~~L~Sw~s~~dps~G~fsl~l~~~g~~~~~~~~g~~~yw~sg~ 215 (459)
...+.+.+.|+++|+..++-. ...+.|.+..
T Consensus 84 ----------------~~~~~~~~~L~ddGnlvl~~~-~~~~~W~Sf~ 114 (116)
T cd00028 84 ----------------RVNGNYVLVLLDDGNLVLYDS-DGNFLWQSFD 114 (116)
T ss_pred ----------------CCCCceEEEEeCCCCEEEECC-CCCEEEcCCC
Confidence 024678899999997655432 2457888754
No 10
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.58 E-value=1.9e-07 Score=73.68 Aligned_cols=72 Identities=32% Similarity=0.754 Sum_probs=55.4
Q ss_pred CcEEEEccccCCCCcccccccCCCHHHHHHHHhc-CCCeEeEeeccCCCCcceEeec-cccceeeeecCCCCCceEEEE
Q 012654 340 DQFIKLDGIKAPDLLQVSVNDNMNLKQCEAECLK-NCTCRAYAYSNLTEGSGCLMWF-GDLIDISKTLGNFTGQSVYIR 416 (459)
Q Consensus 340 ~~F~~l~~v~~p~~~~~~~~~~~s~~~C~~~Cl~-nCsC~a~~y~~~~~g~gC~~w~-~~L~~~~~~~~~~~~~~~yir 416 (459)
..|.+++++.+++..... ....++++|++.|++ +|+|.||.|.. .+.+|.+|. +.+.+.+.... .+.++|.|
T Consensus 4 ~~f~~~~~~~l~~~~~~~-~~~~s~~~C~~~C~~~~~~C~s~~y~~--~~~~C~l~~~~~~~~~~~~~~--~~~~~y~~ 77 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIV-ISVASLEECASKCLNSNCSCRSFTYNN--GTKGCLLWSESSLGDARLFPS--GGVDLYEK 77 (78)
T ss_pred ceeEEecCccCCCCccee-EcCCCHHHHHHHhCCCCCceEEEEEcC--CCCEEEEeeCCccccceeccc--CCceeEEe
Confidence 568999999998654432 345689999999999 99999999974 244699999 77877764444 56678876
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.49 E-value=2e-06 Score=74.11 Aligned_cols=100 Identities=27% Similarity=0.406 Sum_probs=68.7
Q ss_pred CeEEeCCCeeEEEeeCCCCCCCceEEEEEeeCCCCeEEEEc-CCCCCCCCCCeEEEEeeCCcEEEEeCCCcEEEeecCCC
Q 012654 38 EKLVSSSQTFELGFFSPGNSRYSKYLGIWYKKSPETIVWVA-NRNSPILDPSAVLTVSSNGNLVLLNVTKGIIWSSNISR 116 (459)
Q Consensus 38 ~~L~S~~g~F~lgF~~~~~~~~~~~l~I~y~~~~~t~VW~A-nr~~pv~~~~~~L~l~~~GnLvl~d~~g~~vWss~~~~ 116 (459)
+.+.+.+|.+.|-|+.+++ + +.|. ...+++|.. +...... ..+.+.|+++|||||+|..+.++|++...
T Consensus 12 ~p~~~~s~~~~L~l~~dGn----L---vl~~-~~~~~iWss~~t~~~~~-~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~- 81 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSDGN----L---VLYD-SNGSVIWSSNNTSGRGN-SGCYLVLQDDGNLVLYDSSGNVLWQSFDY- 81 (114)
T ss_dssp EEEEECETTEEEEEETTSE----E---EEEE-TTTEEEEE--S-TTSS--SSEEEEEETTSEEEEEETTSEEEEESTTS-
T ss_pred cccccccccccceECCCCe----E---EEEc-CCCCEEEEecccCCccc-cCeEEEEeCCCCEEEEeecceEEEeecCC-
Confidence 4565656899999998773 3 2354 346789999 5454422 35889999999999999999999999432
Q ss_pred CCCCcEEEEec--CCCEEEEEeeecCCCCeeeEeeecCCC
Q 012654 117 KVENPVAQLQD--TGNLVLVDVIRKNTSESYLWQSFDYPS 154 (459)
Q Consensus 117 ~~~~~~a~L~d--sGNLVl~~~~~~~~~~~~lWqSFD~PT 154 (459)
.....+..++ .||++ +.. ...+.|.|=+.|.
T Consensus 82 -ptdt~L~~q~l~~~~~~-~~~-----~~~~sw~s~~dps 114 (114)
T PF01453_consen 82 -PTDTLLPGQKLGDGNVT-GKN-----DSLTSWSSNTDPS 114 (114)
T ss_dssp -SS-EEEEEET--TSEEE-EES-----TSSEEEESS----
T ss_pred -CccEEEeccCcccCCCc-ccc-----ceEEeECCCCCCC
Confidence 3456778888 89988 653 2468999877663
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.18 E-value=0.00049 Score=54.29 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=35.3
Q ss_pred EccccCCCCcccccccCCCHHHHHHHHhcCCCeEeEeeccCCCCcceEeeccc
Q 012654 345 LDGIKAPDLLQVSVNDNMNLKQCEAECLKNCTCRAYAYSNLTEGSGCLMWFGD 397 (459)
Q Consensus 345 l~~v~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~y~~~~~g~gC~~w~~~ 397 (459)
++++.++..+..... ..+.++|++.|+.+|+|.||.|.. +...|+++...
T Consensus 9 ~~~~~~~g~d~~~~~-~~s~~~Cq~~C~~~~~C~afT~~~--~~~~C~lk~~~ 58 (73)
T cd01100 9 GSNVDFRGGDLSTVF-ASSAEQCQAACTADPGCLAFTYNT--KSKKCFLKSSE 58 (73)
T ss_pred cCCCccccCCcceee-cCCHHHHHHHcCCCCCceEEEEEC--CCCeEEcccCC
Confidence 356666654443232 458999999999999999999974 23359986543
No 13
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=91.92 E-value=0.21 Score=38.86 Aligned_cols=57 Identities=18% Similarity=0.452 Sum_probs=39.9
Q ss_pred cEEEEccccCCCCcccccccCCCHHHHHHHHhcCCC-eEeEeeccCCCCcceEeeccccce
Q 012654 341 QFIKLDGIKAPDLLQVSVNDNMNLKQCEAECLKNCT-CRAYAYSNLTEGSGCLMWFGDLID 400 (459)
Q Consensus 341 ~F~~l~~v~~p~~~~~~~~~~~s~~~C~~~Cl~nCs-C~a~~y~~~~~g~gC~~w~~~L~~ 400 (459)
.|.++.+..+........ ...++++|.+.|+.+=. |.+|.|.. ....|++.......
T Consensus 3 ~f~~~~~~~l~~~~~~~~-~v~s~~~C~~~C~~~~~~C~s~~y~~--~~~~C~L~~~~~~~ 60 (79)
T PF00024_consen 3 AFERIPGYRLSGHSIKEI-NVPSLEECAQLCLNEPRRCKSFNYDP--SSKTCYLSSSDRSS 60 (79)
T ss_dssp TEEEEEEEEEESCEEEEE-EESSHHHHHHHHHHSTT-ESEEEEET--TTTEEEEECSSSSS
T ss_pred CeEEECCEEEeCCcceEE-cCCCHHHHHhhcCcCcccCCeEEEEC--CCCEEEEcCCCCCc
Confidence 477777777665433323 33489999999999999 99999974 23359986555433
No 14
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=85.59 E-value=1.3 Score=35.58 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=34.6
Q ss_pred EccccCCCCcccccccCCCHHHHHHHHhcCCCeEeEeeccCC-CCcceEeec
Q 012654 345 LDGIKAPDLLQVSVNDNMNLKQCEAECLKNCTCRAYAYSNLT-EGSGCLMWF 395 (459)
Q Consensus 345 l~~v~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~y~~~~-~g~gC~~w~ 395 (459)
+++++++..+..... ..+.++|++.|..+=.|.+|.|.... ....|++..
T Consensus 6 ~~~~df~G~Dl~~~~-~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~ 56 (79)
T smart00223 6 YKNVDFRGSDINTVY-VPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKD 56 (79)
T ss_pred ccCccccCceeeeee-cCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCc
Confidence 346666665544332 45899999999999999999997431 111698743
No 15
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=84.14 E-value=1 Score=32.06 Aligned_cols=24 Identities=21% Similarity=0.688 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHhcCCCeEeEeecc
Q 012654 361 NMNLKQCEAECLKNCTCRAYAYSN 384 (459)
Q Consensus 361 ~~s~~~C~~~Cl~nCsC~a~~y~~ 384 (459)
..+.++|.++|..+=.|.+|.|..
T Consensus 15 ~~s~~~C~~~C~~~~~C~~~~~~~ 38 (51)
T PF14295_consen 15 ASSPEECQAACAADPGCQAFTFNP 38 (51)
T ss_dssp ---HHHHHHHHHTSTT--EEEEET
T ss_pred CCCHHHHHHHccCCCCCCEEEEEC
Confidence 458999999999999999999974
No 16
>smart00605 CW CW domain.
Probab=82.59 E-value=6.6 Score=32.20 Aligned_cols=55 Identities=15% Similarity=0.406 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHhcCCCeEeEeeccCCCCcceEeecc-ccceeeeecCCCCCceEEEEEeC
Q 012654 361 NMNLKQCEAECLKNCTCRAYAYSNLTEGSGCLMWFG-DLIDISKTLGNFTGQSVYIRVPA 419 (459)
Q Consensus 361 ~~s~~~C~~~Cl~nCsC~a~~y~~~~~g~gC~~w~~-~L~~~~~~~~~~~~~~~yirv~~ 419 (459)
..+.++|.+.|..+..|+.+... ....|.++.- ++..+++... ..+..+=+|+..
T Consensus 21 ~~sw~~Ci~~C~~~~~Cvlay~~---~~~~C~~f~~~~~~~v~~~~~-~~~~~VAfK~~~ 76 (94)
T smart00605 21 TLSWDECIQKCYEDSNCVLAYGN---SSETCYLFSYGTVLTVKKLSS-SSGKKVAFKVST 76 (94)
T ss_pred CCCHHHHHHHHhCCCceEEEecC---CCCceEEEEcCCeEEEEEccC-CCCcEEEEEEeC
Confidence 46789999999999999987654 2246987643 4555666532 145567777754
No 17
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=79.29 E-value=7.7 Score=29.72 Aligned_cols=52 Identities=19% Similarity=0.491 Sum_probs=34.9
Q ss_pred cCCCHHHHHHHHhcCCCeEeEeeccCCCCcceEeec-cccceeeeecCCCCCceEEEE
Q 012654 360 DNMNLKQCEAECLKNCTCRAYAYSNLTEGSGCLMWF-GDLIDISKTLGNFTGQSVYIR 416 (459)
Q Consensus 360 ~~~s~~~C~~~Cl~nCsC~a~~y~~~~~g~gC~~w~-~~L~~~~~~~~~~~~~~~yir 416 (459)
...+.++|-+.|..+=.|.++.+. ...|.++. +++..+++... ..+..+-+|
T Consensus 18 ~~~sw~~Cv~~C~~~~~C~la~~~----~~~C~~y~~~~i~~v~~~~~-~~~~~VA~K 70 (71)
T PF08277_consen 18 TNTSWDDCVQKCYNDENCVLAYFD----SGKCYLYNYGSISTVQKTDS-SSGNKVAFK 70 (71)
T ss_pred cCCCHHHHhHHhCCCCEEEEEEeC----CCCEEEEEcCCEEEEEEeec-CCCeEEEEE
Confidence 346789999999999999998885 23699874 34445555432 134444444
No 18
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=75.87 E-value=2.1 Score=27.35 Aligned_cols=29 Identities=21% Similarity=0.638 Sum_probs=21.5
Q ss_pred CCCCcCCCCCccccCC-CCCccccCCCCcc
Q 012654 288 CGVYGKCGANSICILD-KGPNCECLKGFKL 316 (459)
Q Consensus 288 Cdv~g~CG~~giC~~~-~~~~C~C~~GF~p 316 (459)
|.....|..++.|... +...|.|++||..
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCcc
Confidence 4545678888999754 3568999999954
No 19
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=73.10 E-value=12 Score=29.76 Aligned_cols=36 Identities=28% Similarity=0.693 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHhc--CCCeEeEeeccCCCCcceEeecccc
Q 012654 361 NMNLKQCEAECLK--NCTCRAYAYSNLTEGSGCLMWFGDL 398 (459)
Q Consensus 361 ~~s~~~C~~~Cl~--nCsC~a~~y~~~~~g~gC~~w~~~L 398 (459)
..++++|.++|++ +=.|.+|.|.. ....|.+-..+.
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~--~~~~C~L~~~~~ 61 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNY--KSKECILSDEDR 61 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEc--CCCEEEEeCCCc
Confidence 3689999999999 88999999964 233599754443
No 20
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=69.86 E-value=2.7 Score=28.11 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=14.3
Q ss_pred cccCCCCCccccCCCCccc
Q 012654 299 ICILDKGPNCECLKGFKLK 317 (459)
Q Consensus 299 iC~~~~~~~C~C~~GF~p~ 317 (459)
.|+.+...+|.||.||...
T Consensus 11 ~CDpn~~~~C~CPeGyIld 29 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYILD 29 (34)
T ss_pred ccCCCCCCceeCCCceEec
Confidence 5665566789999999753
No 21
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=62.57 E-value=25 Score=36.41 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=34.5
Q ss_pred eeCCcEEEEeC-CCcEEEeecCCCC--CC-----CcEEEEecCCCEEEEEeeecCCCCeeeEee
Q 012654 94 SSNGNLVLLNV-TKGIIWSSNISRK--VE-----NPVAQLQDTGNLVLVDVIRKNTSESYLWQS 149 (459)
Q Consensus 94 ~~~GnLvl~d~-~g~~vWss~~~~~--~~-----~~~a~L~dsGNLVl~~~~~~~~~~~~lWqS 149 (459)
+.+|.|+-.|. +|+++|+....+. .. ........+|.|+-.|.. +++++|+-
T Consensus 127 ~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~----tG~~~W~~ 186 (394)
T PRK11138 127 SEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNES----DGAVKWTV 186 (394)
T ss_pred cCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEcc----CCCEeeee
Confidence 45788887775 7999999875431 11 112233456778888875 58899975
No 22
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=61.84 E-value=6.5 Score=25.90 Aligned_cols=24 Identities=21% Similarity=0.623 Sum_probs=18.9
Q ss_pred cCCCCCccccCCCCCccccCCCCcc
Q 012654 292 GKCGANSICILDKGPNCECLKGFKL 316 (459)
Q Consensus 292 g~CG~~giC~~~~~~~C~C~~GF~p 316 (459)
..|...|.|... ...|.|.+||.-
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~G 29 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYTG 29 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCcC
Confidence 469999999743 468999999853
No 23
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=60.54 E-value=3.9 Score=28.37 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=23.1
Q ss_pred cCCCC-cCCCCCccccCC-CCCccccCCCCccc
Q 012654 287 VCGVY-GKCGANSICILD-KGPNCECLKGFKLK 317 (459)
Q Consensus 287 ~Cdv~-g~CG~~giC~~~-~~~~C~C~~GF~p~ 317 (459)
+|... ..|..++.|... ++-.|.|++||+..
T Consensus 4 EC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~ 36 (42)
T PF07645_consen 4 ECAEGPHNCPENGTCVNTEGSYSCSCPPGYELN 36 (42)
T ss_dssp TTTTTSSSSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred ccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence 56664 479999999743 34579999999843
No 24
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=60.12 E-value=8.2 Score=27.94 Aligned_cols=31 Identities=26% Similarity=0.744 Sum_probs=25.6
Q ss_pred Cc-cCCCCcCCCCCccccCCCCCccccCCCCcccC
Q 012654 285 PN-VCGVYGKCGANSICILDKGPNCECLKGFKLKS 318 (459)
Q Consensus 285 p~-~Cdv~g~CG~~giC~~~~~~~C~C~~GF~p~~ 318 (459)
|. .|....-|-.++.|. ...|.|++||.+..
T Consensus 18 ~g~~C~~~~qC~~~s~C~---~g~C~C~~g~~~~~ 49 (52)
T PF01683_consen 18 PGESCESDEQCIGGSVCV---NGRCQCPPGYVEVG 49 (52)
T ss_pred CCCCCCCcCCCCCcCEEc---CCEeECCCCCEecC
Confidence 44 899999999999995 35799999997754
No 25
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=59.75 E-value=2.5 Score=22.18 Aligned_cols=10 Identities=30% Similarity=0.939 Sum_probs=7.0
Q ss_pred ccccCCCCcc
Q 012654 307 NCECLKGFKL 316 (459)
Q Consensus 307 ~C~C~~GF~p 316 (459)
.|.|++||.-
T Consensus 1 ~C~C~~G~~G 10 (13)
T PF12661_consen 1 TCQCPPGWTG 10 (13)
T ss_dssp EEEE-TTEET
T ss_pred CccCcCCCcC
Confidence 4899999863
No 26
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=56.51 E-value=41 Score=34.29 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=11.2
Q ss_pred eCCcEEEEe-CCCcEEEeecC
Q 012654 95 SNGNLVLLN-VTKGIIWSSNI 114 (459)
Q Consensus 95 ~~GnLvl~d-~~g~~vWss~~ 114 (459)
.+|.|.-.| .+|+++|+...
T Consensus 73 ~~g~v~a~d~~tG~~~W~~~~ 93 (377)
T TIGR03300 73 ADGTVVALDAETGKRLWRVDL 93 (377)
T ss_pred CCCeEEEEEccCCcEeeeecC
Confidence 345555555 35666666543
No 27
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=55.46 E-value=9.6 Score=25.03 Aligned_cols=29 Identities=24% Similarity=0.670 Sum_probs=20.9
Q ss_pred cCCCCcCCCCCccccCCC-CCccccCCCCc
Q 012654 287 VCGVYGKCGANSICILDK-GPNCECLKGFK 315 (459)
Q Consensus 287 ~Cdv~g~CG~~giC~~~~-~~~C~C~~GF~ 315 (459)
.|.....|...+.|.... ...|.|++||.
T Consensus 4 ~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 4 ECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred cCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 465545788888997432 45699999996
No 28
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=55.36 E-value=50 Score=34.13 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=10.5
Q ss_pred eeCCcEEEEeC-CCcEEEeec
Q 012654 94 SSNGNLVLLNV-TKGIIWSSN 113 (459)
Q Consensus 94 ~~~GnLvl~d~-~g~~vWss~ 113 (459)
+.+|.|+..|. +|+.+|+.+
T Consensus 301 ~~~g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 301 DQNDRVYALDTRGGVELWSQS 321 (394)
T ss_pred cCCCeEEEEECCCCcEEEccc
Confidence 44555555554 455666544
No 29
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.22 E-value=57 Score=32.43 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCCCCCCCC-----CeEEEEeeCCcEEEEeCCCcEEEeecCC
Q 012654 70 SPETIVWVANRNSPILDP-----SAVLTVSSNGNLVLLNVTKGIIWSSNIS 115 (459)
Q Consensus 70 ~~~t~VW~Anr~~pv~~~-----~~~L~l~~~GnLvl~d~~g~~vWss~~~ 115 (459)
.+.+..|.|.|..|+-.+ +.+..-+-||+|.-.|+.|+.||+..+.
T Consensus 167 ~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~ 217 (354)
T KOG4649|consen 167 YSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATK 217 (354)
T ss_pred CCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCC
Confidence 346899999999998654 2334445689998889999999987654
No 30
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=52.06 E-value=61 Score=33.05 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=11.6
Q ss_pred EeeCCcEEEEeC-CCcEEEee
Q 012654 93 VSSNGNLVLLNV-TKGIIWSS 112 (459)
Q Consensus 93 l~~~GnLvl~d~-~g~~vWss 112 (459)
.+.+|.|+..|. +|+++|+.
T Consensus 285 ~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 285 TDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred ECCCCeEEEEECCCCcEEEcc
Confidence 344566665554 45666765
No 31
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=51.55 E-value=9.2 Score=23.60 Aligned_cols=11 Identities=36% Similarity=1.153 Sum_probs=9.5
Q ss_pred ccccCCCCccc
Q 012654 307 NCECLKGFKLK 317 (459)
Q Consensus 307 ~C~C~~GF~p~ 317 (459)
.|+|++||+..
T Consensus 3 ~C~C~~Gy~l~ 13 (24)
T PF12662_consen 3 TCSCPPGYQLS 13 (24)
T ss_pred EeeCCCCCcCC
Confidence 59999999865
No 32
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=50.27 E-value=62 Score=30.09 Aligned_cols=75 Identities=23% Similarity=0.437 Sum_probs=43.8
Q ss_pred CCeEEEEcCC----CCCC----CCCCeEEEEeeCCcEEEEeC-CCcEEEeecCCCCCC-------CcEEEEecCCCEEEE
Q 012654 71 PETIVWVANR----NSPI----LDPSAVLTVSSNGNLVLLNV-TKGIIWSSNISRKVE-------NPVAQLQDTGNLVLV 134 (459)
Q Consensus 71 ~~t~VW~Anr----~~pv----~~~~~~L~l~~~GnLvl~d~-~g~~vWss~~~~~~~-------~~~a~L~dsGNLVl~ 134 (459)
....+|..+- ..++ .+..-.+..+.+|.|+.+|. +|+.+|+........ ........+|.|+..
T Consensus 12 tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~ 91 (238)
T PF13360_consen 12 TGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYAL 91 (238)
T ss_dssp TTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEE
T ss_pred CCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEec
Confidence 5677887753 2121 11222333357899999996 899999988642211 112223345556666
Q ss_pred EeeecCCCCeeeEee
Q 012654 135 DVIRKNTSESYLWQS 149 (459)
Q Consensus 135 ~~~~~~~~~~~lWqS 149 (459)
|.. +++++|+.
T Consensus 92 d~~----tG~~~W~~ 102 (238)
T PF13360_consen 92 DAK----TGKVLWSI 102 (238)
T ss_dssp ETT----TSCEEEEE
T ss_pred ccC----Ccceeeee
Confidence 643 58899995
No 33
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=49.71 E-value=34 Score=31.91 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=31.9
Q ss_pred CCcEEEEeC-CCcEEEeecCCCCCCCc----------EEEEecCCCEEEEEeeecCCCCeeeEee
Q 012654 96 NGNLVLLNV-TKGIIWSSNISRKVENP----------VAQLQDTGNLVLVDVIRKNTSESYLWQS 149 (459)
Q Consensus 96 ~GnLvl~d~-~g~~vWss~~~~~~~~~----------~a~L~dsGNLVl~~~~~~~~~~~~lWqS 149 (459)
+|.|...|. +|+.+|+.......... ......+|+|+..|.. +++++|+-
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~----tG~~~W~~ 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAK----TGKVLWRF 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETT----TSEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECC----CCCEEEEe
Confidence 688888897 89999999752111111 1122467777777754 57889964
No 34
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=46.31 E-value=16 Score=23.41 Aligned_cols=30 Identities=20% Similarity=0.562 Sum_probs=20.5
Q ss_pred cCCCCcCCCCCccccCCC-CCccccCCCCcc
Q 012654 287 VCGVYGKCGANSICILDK-GPNCECLKGFKL 316 (459)
Q Consensus 287 ~Cdv~g~CG~~giC~~~~-~~~C~C~~GF~p 316 (459)
.|.....|...+.|.... ...|.|++||..
T Consensus 4 ~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 4 ECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred cCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 455435687778897432 357999999853
No 35
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=42.92 E-value=7.3 Score=25.44 Aligned_cols=24 Identities=33% Similarity=0.779 Sum_probs=18.2
Q ss_pred cCCCCCccccCC--CCCccccCCCCc
Q 012654 292 GKCGANSICILD--KGPNCECLKGFK 315 (459)
Q Consensus 292 g~CG~~giC~~~--~~~~C~C~~GF~ 315 (459)
..|...|.|... ....|.|++||.
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCc
Confidence 478888888643 346799999985
No 36
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=42.68 E-value=75 Score=26.59 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=34.3
Q ss_pred CCeeEEEEEecCCCcEEEEEECCCccEEEEEeeccCCceeEeecCCccCCCCcCCCCCc--ccc
Q 012654 240 QDEIYFSYESYNSPSIMMLKLNPSGTVQRLIWNERNAAWDVVYSAPNVCGVYGKCGANS--ICI 301 (459)
Q Consensus 240 ~~~~~~~~~~~~~~~~~rl~Ld~dG~lr~y~w~~~~~~W~~~~~~p~~Cdv~g~CG~~g--iC~ 301 (459)
+..+..++.+.....+++++.+.+.+-....|.........+- .|..+++|-.+. .|.
T Consensus 42 ~~s~~~r~~ld~~G~l~~~~w~~~~~~W~~~~~~p~d~Cd~y~----~CG~~g~C~~~~~~~C~ 101 (110)
T PF00954_consen 42 NSSVLSRLVLDSDGQLQRYIWNESTQSWSVFWSAPKDQCDVYG----FCGPNGICNSNNSPKCS 101 (110)
T ss_pred CCceEEEEEEeeeeEEEEEEEecCCCcEEEEEEecccCCCCcc----ccCCccEeCCCCCCceE
Confidence 3333444444444567778776666666666655444444432 899999996543 463
No 37
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=42.12 E-value=5.6 Score=26.93 Aligned_cols=25 Identities=28% Similarity=0.753 Sum_probs=16.9
Q ss_pred CcCCCCCccccCC-CCCccccCCCCc
Q 012654 291 YGKCGANSICILD-KGPNCECLKGFK 315 (459)
Q Consensus 291 ~g~CG~~giC~~~-~~~~C~C~~GF~ 315 (459)
.+-|.++..|... ..-.|.|.+||.
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~ 30 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYE 30 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEE
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCc
Confidence 3578889999754 345799999996
No 38
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=39.39 E-value=52 Score=20.57 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=15.7
Q ss_pred eEEEEeeCCcEEEEeCCCcEEE
Q 012654 89 AVLTVSSNGNLVLLNVTKGIIW 110 (459)
Q Consensus 89 ~~L~l~~~GnLvl~d~~g~~vW 110 (459)
.-+.++++|++++.|..+.-||
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEE
Confidence 3477778888888887665554
No 39
>smart00181 EGF Epidermal growth factor-like domain.
Probab=37.65 E-value=26 Score=22.51 Aligned_cols=24 Identities=29% Similarity=0.754 Sum_probs=17.4
Q ss_pred cCCCCCccccCC-CCCccccCCCCcc
Q 012654 292 GKCGANSICILD-KGPNCECLKGFKL 316 (459)
Q Consensus 292 g~CG~~giC~~~-~~~~C~C~~GF~p 316 (459)
..|... .|... +...|.|++||..
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCcc
Confidence 457666 78643 4568999999964
No 40
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=35.08 E-value=1.1e+02 Score=32.70 Aligned_cols=75 Identities=19% Similarity=0.348 Sum_probs=44.0
Q ss_pred CCeEEEEcCCC-------CCCCCCCeEEEEeeCCcEEEEeC-CCcEEEeecCCCC--------C-------C-CcEEEEe
Q 012654 71 PETIVWVANRN-------SPILDPSAVLTVSSNGNLVLLNV-TKGIIWSSNISRK--------V-------E-NPVAQLQ 126 (459)
Q Consensus 71 ~~t~VW~Anr~-------~pv~~~~~~L~l~~~GnLvl~d~-~g~~vWss~~~~~--------~-------~-~~~a~L~ 126 (459)
..+++|..+-. .|+.........+.+|.|+-+|. +|+++|+...... . . ..+..-.
T Consensus 38 ~~~~~W~~~~~~~~~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~ 117 (488)
T cd00216 38 KLKVAWTFSTGDERGQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT 117 (488)
T ss_pred cceeeEEEECCCCCCcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec
Confidence 35677876543 24433222334445788887775 7899999764321 0 0 1111223
Q ss_pred cCCCEEEEEeeecCCCCeeeEee
Q 012654 127 DTGNLVLVDVIRKNTSESYLWQS 149 (459)
Q Consensus 127 dsGNLVl~~~~~~~~~~~~lWqS 149 (459)
.+|.++-.|.. +++.+|+-
T Consensus 118 ~~g~v~AlD~~----TG~~~W~~ 136 (488)
T cd00216 118 FDGRLVALDAE----TGKQVWKF 136 (488)
T ss_pred CCCeEEEEECC----CCCEeeee
Confidence 46788878875 68899983
No 41
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=34.93 E-value=65 Score=26.68 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCCCCCCeEEEEeeCCcEEEEe
Q 012654 70 SPETIVWVANRNSPILDPSAVLTVSSNGNLVLLN 103 (459)
Q Consensus 70 ~~~t~VW~Anr~~pv~~~~~~L~l~~~GnLvl~d 103 (459)
|..++.|+-+....+. ....+.++.+|||.+.+
T Consensus 32 P~P~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs~ 64 (95)
T cd05845 32 VPLRIYWMNSDLLHIT-QDERVSMGQNGNLYFAN 64 (95)
T ss_pred CCCEEEEECCCCcccc-ccccEEECCCceEEEEE
Confidence 5677889855444443 34667777788887753
No 42
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.08 E-value=29 Score=28.90 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=9.2
Q ss_pred CCcchhHHHHHHHHHHhh
Q 012654 1 MENLLCFYIFSFWIFFLI 18 (459)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (459)
|+...++||.++|.++|+
T Consensus 1 MaSK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLL 18 (95)
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 776665555444433333
No 43
>PHA02887 EGF-like protein; Provisional
Probab=28.68 E-value=58 Score=28.17 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=21.1
Q ss_pred cCCC--CcCCCCCccccCC---CCCccccCCCCc
Q 012654 287 VCGV--YGKCGANSICILD---KGPNCECLKGFK 315 (459)
Q Consensus 287 ~Cdv--~g~CG~~giC~~~---~~~~C~C~~GF~ 315 (459)
+|.- -++|= +|.|-.- +.+.|.|++||.
T Consensus 85 pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYt 117 (126)
T PHA02887 85 KCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYT 117 (126)
T ss_pred ccChHhhCEee-CCEEEccccCCCceeECCCCcc
Confidence 6765 46786 7899752 468999999984
No 44
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.32 E-value=9.5e+02 Score=27.57 Aligned_cols=85 Identities=20% Similarity=0.389 Sum_probs=54.2
Q ss_pred CeEEEEeeCCcEEEEeC-CCcE-EEeecCC--------CCCCCcEEEEecCCCEEEEEeeecCCCCe-eeEeeecCCCCC
Q 012654 88 SAVLTVSSNGNLVLLNV-TKGI-IWSSNIS--------RKVENPVAQLQDTGNLVLVDVIRKNTSES-YLWQSFDYPSDT 156 (459)
Q Consensus 88 ~~~L~l~~~GnLvl~d~-~g~~-vWss~~~--------~~~~~~~a~L~dsGNLVl~~~~~~~~~~~-~lWqSFD~PTDT 156 (459)
-..+.-.+||.++...+ +|++ ||.+... .+.+++.++..-+||.+|..+= .++ -.|
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL----DGtVRAw--------- 419 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL----DGTVRAW--------- 419 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeec----CCeEEee---------
Confidence 35688899999988765 4554 8998742 1234567789999999998652 232 233
Q ss_pred CCCCCeEeeeccCCceeEEEeecCCCCCCCeeeE-EEeccCCcc
Q 012654 157 LLPGMKVGWNLKTGVEWYLTSWRSADDPSPGNFT-SRLDIHVLP 199 (459)
Q Consensus 157 LLPGqkL~~~~~tg~~~~L~Sw~s~~dps~G~fs-l~l~~~g~~ 199 (459)
+++.+ .-.|+-+-|.+-.|+ +..|+.|..
T Consensus 420 ---------DlkRY-----rNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 420 ---------DLKRY-----RNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred ---------eeccc-----ceeeeecCCCceeeeEEEEcCCCCE
Confidence 33322 223444557777776 777887743
No 45
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=21.94 E-value=51 Score=39.87 Aligned_cols=42 Identities=31% Similarity=0.646 Sum_probs=28.9
Q ss_pred CcCCCCCccccCC-CCCccccCCCCcccCCCCCCCCCCcccCC
Q 012654 291 YGKCGANSICILD-KGPNCECLKGFKLKSQDNQTWPGKCERSH 332 (459)
Q Consensus 291 ~g~CG~~giC~~~-~~~~C~C~~GF~p~~~~~~~~s~GC~r~~ 332 (459)
.+.||++|-|... +..+|.|.|||.-..-+-.-.++-|++..
T Consensus 1244 s~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGv 1286 (2531)
T KOG4289|consen 1244 SGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGV 1286 (2531)
T ss_pred cCCCCCCCceEEecCceeEEecCCccccceeeecccCccccce
Confidence 4789999999764 45789999999754322133456676643
No 46
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=20.73 E-value=1.8e+02 Score=18.09 Aligned_cols=19 Identities=37% Similarity=0.740 Sum_probs=11.1
Q ss_pred eeCCcEEEEeC-CCcEEEee
Q 012654 94 SSNGNLVLLNV-TKGIIWSS 112 (459)
Q Consensus 94 ~~~GnLvl~d~-~g~~vWss 112 (459)
+.+|.|+-.|. +|+.+|+.
T Consensus 13 ~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 13 STDGTLYALDAKTGEILWTY 32 (33)
T ss_pred cCCCEEEEEEcccCcEEEEc
Confidence 34566665555 56667753
Done!