BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012655
(459 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1F9|PCH2_ARATH Pachytene checkpoint protein 2 homolog OS=Arabidopsis thaliana
GN=At4g24710 PE=2 SV=1
Length = 467
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/460 (75%), Positives = 390/460 (84%), Gaps = 10/460 (2%)
Query: 5 MEITVHNSTEAEISDQDGIPEQKGVAGP-----PLPLLAEDKFLVSVEVCLKLSSTARID 59
ME++ N EA IP Q VA P P P L E+KFLVSVEVCLK SSTAR++
Sbjct: 13 MEVSYQNPIEAAT-----IPVQIAVAEPVATPNPPPCLHENKFLVSVEVCLKPSSTARLE 67
Query: 60 DVRLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRICVSDTDEWVKNHDILLFWQVKP 119
DV+ AVERMLE RS+SY DG + IP DD FLV+NVQRIC+ DT+EWVKN+D+LLFWQVKP
Sbjct: 68 DVQRAVERMLENRSMSYADGLVLIPADDLFLVDNVQRICICDTEEWVKNNDVLLFWQVKP 127
Query: 120 VVQVFQLSEEGPCEELSGDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASAL 179
VV FQL EEGPCE+L DGQ +SFNEWILPAKEFDG+WESLIYESGLKQRLL YAASAL
Sbjct: 128 VVHTFQLIEEGPCEDLCADGQPASFNEWILPAKEFDGLWESLIYESGLKQRLLRYAASAL 187
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F +KGVNP LVSWNRI+LLHGPPGTGKTSLCKALAQKLSIR +SRYP CQL+EVNAHSL
Sbjct: 188 LFTQKGVNPNLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSL 247
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
FSKWFSESGKLVAKLFQKIQEMVEE+ NLVFVLIDEVESLAAARKAALSGSEPSDSIRVV
Sbjct: 248 FSKWFSESGKLVAKLFQKIQEMVEEDGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 307
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359
NALLTQMDKLKS+PNVIILTTSNIT AID+AFVDRADIKAYVGPPTL RYEILRSC++E
Sbjct: 308 NALLTQMDKLKSAPNVIILTTSNITTAIDVAFVDRADIKAYVGPPTLHVRYEILRSCVEE 367
Query: 360 LIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRS 419
LI GIIS+FQ CD +P+FS LKEKLS ++ + + F KQL+EAA+ CEGLSGRS
Sbjct: 368 LISKGIISSFQGCDGLSIPSFSSLKEKLSESEVHDTNTVPWFCKQLIEAAKGCEGLSGRS 427
Query: 420 LRKLPFLAHAALANPNGCDPSKFLLTVIDTARKERSELPD 459
LRKLPFLAHAALA+P DPS FL T+I+TA++E+SE P+
Sbjct: 428 LRKLPFLAHAALADPYSHDPSNFLCTMIETAKREKSEQPE 467
>sp|Q7XK25|PCH2_ORYSJ Pachytene checkpoint protein 2 homolog OS=Oryza sativa subsp.
japonica GN=Os04g0479000 PE=3 SV=3
Length = 471
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/419 (75%), Positives = 355/419 (84%)
Query: 38 AEDKFLVSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRI 97
A+D+ LVSVEV L +STAR +DV AVERMLE RSLSYVDGP+PIP DDPFL+ NV+RI
Sbjct: 50 ADDRILVSVEVLLHATSTARAEDVCAAVERMLEARSLSYVDGPVPIPNDDPFLLANVKRI 109
Query: 98 CVSDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDGQLSSFNEWILPAKEFDGM 157
+ DTDEW +NH +LLFWQV+PVV VFQLSE+GP EE D LSSFNEW LPAKEFDG+
Sbjct: 110 QICDTDEWTENHKVLLFWQVRPVVHVFQLSEDGPGEEPGEDDTLSSFNEWALPAKEFDGL 169
Query: 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217
WESL+YE GLKQRLL YAASAL+F EKGV+P LVSWNRIVLLHGPPGTGKTSLCKALAQK
Sbjct: 170 WESLLYEVGLKQRLLRYAASALLFTEKGVDPCLVSWNRIVLLHGPPGTGKTSLCKALAQK 229
Query: 218 LSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVE 277
LSIRF SRY CQL+EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE+NLVFVLIDEVE
Sbjct: 230 LSIRFKSRYSMCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVE 289
Query: 278 SLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADI 337
SLAAAR+AA+SGSEPSDSIRVVNALLTQMDKLKS PNVIILTTSNIT AIDIAFVDRADI
Sbjct: 290 SLAAARQAAISGSEPSDSIRVVNALLTQMDKLKSWPNVIILTTSNITTAIDIAFVDRADI 349
Query: 338 KAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADR 397
KAYVGPPTLQARYEILRSCLQEL+R GI+++ Q + L ++ L E P++ +
Sbjct: 350 KAYVGPPTLQARYEILRSCLQELLRVGILTHTQGGNSLCLLSYFSLMENQHCPEVADPHG 409
Query: 398 SQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLTVIDTARKERSE 456
S H L +AAE CEGLSGR+LRKLPFLAHA++ANP+ CD S FL +I TA++E SE
Sbjct: 410 SVHLSGLLHKAAEICEGLSGRTLRKLPFLAHASVANPSCCDASAFLHALIQTAQRELSE 468
>sp|A2XUN8|PCH2_ORYSI Pachytene checkpoint protein 2 homolog OS=Oryza sativa subsp.
indica GN=OsI_16324 PE=3 SV=2
Length = 471
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/419 (75%), Positives = 355/419 (84%)
Query: 38 AEDKFLVSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRI 97
A+D+ LVSVEV L +STAR +DV AVERMLE RSLSYVDGP+PIP DDPFL+ NV+RI
Sbjct: 50 ADDRILVSVEVLLHATSTARAEDVCAAVERMLEARSLSYVDGPVPIPNDDPFLLANVKRI 109
Query: 98 CVSDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDGQLSSFNEWILPAKEFDGM 157
+ DTDEW +NH +LLFWQV+PVV VFQLSE+GP EE D LSSFNEW LPAKEFDG+
Sbjct: 110 QICDTDEWTENHKVLLFWQVRPVVHVFQLSEDGPGEEPGEDDTLSSFNEWALPAKEFDGL 169
Query: 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217
WESL+YE GLKQRLL YAASAL+F EKGV+P LVSWNRIVLLHGPPGTGKTSLCKALAQK
Sbjct: 170 WESLLYEVGLKQRLLRYAASALLFTEKGVDPCLVSWNRIVLLHGPPGTGKTSLCKALAQK 229
Query: 218 LSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVE 277
LSIRF SRY CQL+EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE+NLVFVLIDEVE
Sbjct: 230 LSIRFKSRYSMCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVE 289
Query: 278 SLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADI 337
SLAAAR+AA+SGSEPSDSIRVVNALLTQMDKLKS PNVIILTTSNIT AIDIAFVDRADI
Sbjct: 290 SLAAARQAAISGSEPSDSIRVVNALLTQMDKLKSWPNVIILTTSNITTAIDIAFVDRADI 349
Query: 338 KAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADR 397
KAYVGPPTLQARYEILRSCLQEL+R GI+++ Q + L ++ L E P++ +
Sbjct: 350 KAYVGPPTLQARYEILRSCLQELLRVGILTHTQGGNSLCLLSYFSLMENQHCPEVADPHG 409
Query: 398 SQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLTVIDTARKERSE 456
S H L +AAE CEGLSGR+LRKLPFLAHA++ANP+ CD S FL +I TA++E SE
Sbjct: 410 SVHLSGLLHKAAEICEGLSGRTLRKLPFLAHASVANPSCCDASAFLHALIQTAQRELSE 468
>sp|E1C6Q1|PCH2_CHICK Pachytene checkpoint protein 2 homolog OS=Gallus gallus GN=TRIP13
PE=3 SV=1
Length = 432
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 207/426 (48%), Positives = 281/426 (65%), Gaps = 18/426 (4%)
Query: 40 DKFLVSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRICV 99
D + VEV K +STA+ +D+R++V ++L + ++ + D DD FL NVQ + +
Sbjct: 17 DNVQIHVEVHQKSNSTAKKEDIRMSVLKLLNRHNIVFGDYKWT-EFDDGFLNSNVQSVSI 75
Query: 100 SDTDEWVKNHDILLFWQVKPVVQVFQLSEEGP-CEELSGDGQ-LSSFNEWILPAKEFDGM 157
DT+ +K + + + +F L+EEGP E L + + + + N W+LPA EF G+
Sbjct: 76 VDTELKLKERQPIDLSKSSLTIHIFHLNEEGPSIENLEEENEDIVAANHWVLPAAEFHGL 135
Query: 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217
WESLIY++ +K LL Y + L+F+++ V+ L+SWNR+VLLHGPPGTGKTSLCKALAQK
Sbjct: 136 WESLIYDTEVKSHLLDYVTTTLLFSDRNVDSNLISWNRVVLLHGPPGTGKTSLCKALAQK 195
Query: 218 LSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVE 277
L+IR S RY QL+E+N+HSLFSKWFSESGKLV K+FQKIQE++++++ LVFVLIDEVE
Sbjct: 196 LTIRLSYRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQELIDDKDALVFVLIDEVE 255
Query: 278 SLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADI 337
SL AAR A +G+EPSD+IRVVNA+L Q+D++K PNV+ILTTSNIT ID+AFVDRADI
Sbjct: 256 SLTAARSAFKAGTEPSDAIRVVNAVLMQIDQIKRYPNVVILTTSNITEKIDMAFVDRADI 315
Query: 338 KAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILK-EKLSNPDIQEAD 396
K Y+GPP+ A + I SCL+EL++ II P +L +L E +
Sbjct: 316 KQYIGPPSAAAIFRIYLSCLEELMKCQII----------YPRQHLLSLRELEMIGFVENN 365
Query: 397 RSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLT---VIDTARKE 453
S+ L E + EGLSGR LRKLPFLAHA + FL V+D +E
Sbjct: 366 VSR-LSLVLKEISRRSEGLSGRVLRKLPFLAHALYIQSPSVTMTAFLQALSLVVDKQFEE 424
Query: 454 RSELPD 459
R +L D
Sbjct: 425 RKKLAD 430
>sp|Q15645|PCH2_HUMAN Pachytene checkpoint protein 2 homolog OS=Homo sapiens GN=TRIP13
PE=1 SV=2
Length = 432
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 209/441 (47%), Positives = 286/441 (64%), Gaps = 19/441 (4%)
Query: 23 IPEQKGVAGPPLPLLAEDKFLVSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIP 82
+ E G LP +AE V VEV + SSTA+ +D+ L+V ++L + ++ + D
Sbjct: 1 MDEAVGDLKQALPCVAESP-TVHVEVHQRGSSTAKKEDINLSVRKLLNRHNIVFGDYTWT 59
Query: 83 IPIDDPFLVENVQRICVSDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPC-EELSGDGQ- 140
D+PFL NVQ + + DT+ VK+ + + +FQL+E+GP E L + +
Sbjct: 60 -EFDEPFLTRNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETEN 118
Query: 141 LSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLH 200
+ + N W+LPA EF G+W+SL+Y+ +K LL Y + L+F++K VN L++WNR+VLLH
Sbjct: 119 IIAANHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLH 178
Query: 201 GPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQE 260
GPPGTGKTSLCKALAQKL+IR SSRY QL+E+N+HSLFSKWFSESGKLV K+FQKIQ+
Sbjct: 179 GPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQD 238
Query: 261 MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTT 320
++++++ LVFVLIDEVESL AAR A +G+EPSD+IRVVNA+LTQ+D++K NV+ILTT
Sbjct: 239 LIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTT 298
Query: 321 SNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQD-CDQSMLPN 379
SNIT ID+AFVDRADIK Y+GPP+ A ++I SCL+EL++ II Q L
Sbjct: 299 SNITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEM 358
Query: 380 FSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDP 439
++ +S + D S+ EGLSGR LRKLPFLAHA
Sbjct: 359 IGFIENNVSKLSLLLNDISR-----------KSEGLSGRVLRKLPFLAHALYVQAPTVTI 407
Query: 440 SKFLLTV---IDTARKERSEL 457
FL + +D +ER +L
Sbjct: 408 EGFLQALSLAVDKQFEERKKL 428
>sp|Q6P4W8|PCH2_XENTR Pachytene checkpoint protein 2 homolog OS=Xenopus tropicalis
GN=trip13 PE=2 SV=1
Length = 432
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/422 (47%), Positives = 279/422 (66%), Gaps = 18/422 (4%)
Query: 44 VSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRICVSDTD 103
V V+V K +S A D++ V ++L + + + D DD FL++N+ I ++DT+
Sbjct: 21 VHVDVHQKSNSPATSQDIQSHVMQLLNRHCVVFGDYSWT-EFDDSFLMKNIHSISIADTE 79
Query: 104 EWVKNHDILLFWQVKPVVQVFQLSEEGPC-EELSGDGQ-LSSFNEWILPAKEFDGMWESL 161
+K+ + + K ++ +FQL+E+GPC E L + + L + N W+LPA +F G+W+SL
Sbjct: 80 LKLKDRQPIDLSKCKVLIHIFQLNEDGPCVESLEEENEDLVAANHWLLPAADFHGLWDSL 139
Query: 162 IYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221
IY+S +K RLL Y +A++F++K V+ L+SWNR+VLLHGPPGTGKTSLCKALAQKL+IR
Sbjct: 140 IYDSEIKSRLLDYIETAMLFSDKNVDSNLISWNRVVLLHGPPGTGKTSLCKALAQKLTIR 199
Query: 222 FSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAA 281
S RY QLVE+N+HSLFSKWFSESGKLV K+FQKI E++ ++ LVFVLIDEVESL A
Sbjct: 200 LSYRYRYGQLVEINSHSLFSKWFSESGKLVTKMFQKIHELINDKEALVFVLIDEVESLTA 259
Query: 282 ARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYV 341
ARKA+ +G+EPSD+IRVVNA+LTQ+D +K PNV+IL+TSN+T ID+AF DRADIK Y+
Sbjct: 260 ARKASRAGTEPSDAIRVVNAVLTQIDHIKRYPNVVILSTSNLTEKIDVAFTDRADIKQYI 319
Query: 342 GPPTLQARYEILRSCLQELIRTGIISNFQD-CDQSMLPNFSILKEKLSNPDIQEADRSQH 400
GPP+ A ++I SC++EL++ II Q L L+ +S +
Sbjct: 320 GPPSPAAIFKIYLSCIEELMKCQIIYPKQQLLTLRDLEIIGFLENNISKLSL-------- 371
Query: 401 FYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLTV---IDTARKERSEL 457
QL E + EGLSGR LRKLPFLAHA +FL + +D +ER
Sbjct: 372 ---QLNEISRKSEGLSGRVLRKLPFLAHALYLQSPTVTIERFLWALSLAVDEQFQERKNF 428
Query: 458 PD 459
+
Sbjct: 429 SE 430
>sp|Q5XHZ9|PCH2_RAT Pachytene checkpoint protein 2 homolog OS=Rattus norvegicus
GN=Trip13 PE=2 SV=1
Length = 432
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 201/398 (50%), Positives = 274/398 (68%), Gaps = 14/398 (3%)
Query: 34 LPLLAEDKFLVSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIPIPIDDPFLVEN 93
LP +AE V VEV + STA+ +D++ +V R+L++ ++ + D + D+PFL N
Sbjct: 12 LPCVAESP-AVHVEVLQRSGSTAKKEDIKQSVYRLLKRHNIVFGDY-VWTEFDEPFLTRN 69
Query: 94 VQRICVSDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPC-EELSGDGQ-LSSFNEWILPA 151
VQ + + DT+ K+ + + +FQL+EEGP E L + + + + + W+LPA
Sbjct: 70 VQSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEETENIIAASHWVLPA 129
Query: 152 KEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLC 211
EF G+W+SL+Y+ +K LL Y + L+F++K V+ L++WNR+VLLHGPPGTGKTSLC
Sbjct: 130 AEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLC 189
Query: 212 KALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFV 271
KALAQKL+IR SSRY QL+E+N+HSLFSKWFSESGKLV K+FQKIQ++++++ LVFV
Sbjct: 190 KALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKEALVFV 249
Query: 272 LIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAF 331
LIDEVESL AAR A +G+EPSD+IRVVNA+LTQ+D++K NV+ILTTSNIT ID+AF
Sbjct: 250 LIDEVESLTAARNACRAGAEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAF 309
Query: 332 VDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPD 391
VDRADIK Y+GPP+ A ++I SCL+EL++ II Q L+E L
Sbjct: 310 VDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQ--------QLLTLRE-LEMIG 360
Query: 392 IQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHA 429
E + S+ L E + EGLSGR LRKLPFLAHA
Sbjct: 361 FIENNVSK-LSLLLSEISRKSEGLSGRVLRKLPFLAHA 397
>sp|Q3UA06|PCH2_MOUSE Pachytene checkpoint protein 2 homolog OS=Mus musculus GN=Trip13
PE=2 SV=1
Length = 432
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/408 (49%), Positives = 273/408 (66%), Gaps = 16/408 (3%)
Query: 25 EQKGVAGPPLPLLAEDKFLVSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIPIP 84
E G LP +AE V VEV + STA+ +D++ +V R+L + ++ + D +
Sbjct: 3 EAVGDLKQALPCVAESP-AVHVEVLQRSGSTAKKEDIKSSVYRLLNRHNIVFGDY-VWTE 60
Query: 85 IDDPFLVENVQRICVSDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPC-EELSGDGQ-LS 142
DDPFL NVQ + + DT+ K+ + + +FQL+EEGP E L + + +
Sbjct: 61 FDDPFLSRNVQSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEETENII 120
Query: 143 SFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGP 202
+ + W+LPA EF G+W+SL+Y+ +K LL Y + ++F++K V+ L++WNR+VLLHGP
Sbjct: 121 AASHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTVLFSDKNVDSNLITWNRVVLLHGP 180
Query: 203 PGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMV 262
PGTGKTSLCKALAQKL+IR SSRY QL+E+N+HSLFSKWFSESGKLV K+FQKIQ+++
Sbjct: 181 PGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLI 240
Query: 263 EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSN 322
+++ LVFVLIDEVESL AAR A +G+EPSD+IRVVNA+LTQ+D++K NV+ILTTSN
Sbjct: 241 DDKEALVFVLIDEVESLTAARNACRAGAEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSN 300
Query: 323 ITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQD-CDQSMLPNFS 381
IT ID+AFVDRADIK Y+GPP+ A ++I SCL+EL++ II Q L
Sbjct: 301 ITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIG 360
Query: 382 ILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHA 429
++ +S + L E + EGLSGR LRKLPFLAHA
Sbjct: 361 FIENNVSKLSL-----------LLSEISRKSEGLSGRVLRKLPFLAHA 397
>sp|D3K5L7|PCH2_PIG Pachytene checkpoint protein 2 homolog OS=Sus scrofa GN=TRIP13 PE=2
SV=1
Length = 431
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/407 (50%), Positives = 275/407 (67%), Gaps = 14/407 (3%)
Query: 25 EQKGVAGPPLPLLAEDKFLVSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIPIP 84
E G LP +AE V VEV + STA+ +DV+L V ++L + ++ + D
Sbjct: 3 EAVGDLKQALPCVAEAP-TVHVEVHQRSGSTAKKEDVKLNVRKLLNRHNIVFGDYTWT-E 60
Query: 85 IDDPFLVENVQRICVSDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPC-EELSGDGQ-LS 142
D+PFL NVQ + + DT+ VK+ + + VFQL+E GP E L + + +
Sbjct: 61 FDEPFLTRNVQSVSIVDTELKVKDPQPIDLSTCTVALHVFQLNEGGPSSENLEEETENII 120
Query: 143 SFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGP 202
+ N W+LPA EF G+W+SL+Y++ +K LL Y + L+F++K V+ L++WNR+VLLHGP
Sbjct: 121 AANHWLLPAAEFHGLWDSLVYDAEVKSHLLDYVMTTLLFSDKNVDSNLITWNRVVLLHGP 180
Query: 203 PGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMV 262
PGTGKTSLCKALAQKL+IR SSRY QL+E+N+HSLFSKWFSESGKLV ++FQ IQ+++
Sbjct: 181 PGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTRMFQMIQDLI 240
Query: 263 EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSN 322
++++ LVFVLIDEVESL AAR A +G+EPSD+IRVVNA+LTQ+D++K NV+ILTTSN
Sbjct: 241 DDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSN 300
Query: 323 ITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSI 382
IT ID+AFVDRADI+ YVGPP+ A ++I SCL+EL++ II Q
Sbjct: 301 ITERIDVAFVDRADIRQYVGPPSAAAIFKIYLSCLEELMKCQIIYPRQ--------QLLT 352
Query: 383 LKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHA 429
L+E L E + S+ L E + EGLSGR LRKLPFLAHA
Sbjct: 353 LRE-LEMIGFIENNVSK-LSLLLSEISRKSEGLSGRVLRKLPFLAHA 397
>sp|E2R222|PCH2_CANFA Pachytene checkpoint protein 2 homolog OS=Canis familiaris
GN=TRIP13 PE=3 SV=1
Length = 432
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/438 (47%), Positives = 285/438 (65%), Gaps = 17/438 (3%)
Query: 25 EQKGVAGPPLPLLAEDKFLVSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIPIP 84
E G LP +AE V VEV + STA+ +D++L+V ++L + ++ + D
Sbjct: 3 EAVGDLKQALPCVAEAP-TVHVEVHQRSCSTAKKEDIKLSVRKLLNRHNIVFGDYKWN-E 60
Query: 85 IDDPFLVENVQRICVSDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLS 142
DDPFL NVQ + + DT+ VK+ + + VFQL+E GP E + ++
Sbjct: 61 FDDPFLARNVQSVSIVDTELKVKDPQPIDLGACTIALHVFQLNEGGPSSETLEEETENIT 120
Query: 143 SFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGP 202
+ + W+LPA EF G+W+SL+Y+ +K LL Y + L+F++K V+ L++WNR+VLLHGP
Sbjct: 121 AASHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVDSNLIAWNRVVLLHGP 180
Query: 203 PGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMV 262
PGTGKTSLCKALAQKL+IR SSRY QL+E+N+HSLFSKWFSESGKLV K+FQKIQ+++
Sbjct: 181 PGTGKTSLCKALAQKLTIRLSSRYQYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLI 240
Query: 263 EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSN 322
++++ LVFVLIDEVESL AAR A +G+EPSD+IRVVNA+LTQ+D++K NV+ILTTSN
Sbjct: 241 DDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHCNVVILTTSN 300
Query: 323 ITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSI 382
IT ID+AFVDRADI+ Y+GPP+ A ++I SCL+EL++ II Q
Sbjct: 301 ITERIDVAFVDRADIRQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQ--------QLLT 352
Query: 383 LKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKF 442
L+E L E + S+ L E + EGLSGR LRKLPFLAHA F
Sbjct: 353 LRE-LEMIGFIENNVSK-LSLLLSEISRKSEGLSGRVLRKLPFLAHALYIQAPTVTIEGF 410
Query: 443 LLTV---IDTARKERSEL 457
L + +D +ER +L
Sbjct: 411 LQALSLAVDKQFEERKKL 428
>sp|Q6PH52|PCH2_DANRE Pachytene checkpoint protein 2 homolog OS=Danio rerio GN=trip13
PE=2 SV=1
Length = 424
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/423 (47%), Positives = 278/423 (65%), Gaps = 34/423 (8%)
Query: 44 VSVEVCLKLSSTARIDDVRLAVERMLEK-----RSLSYVDGPIPIPIDDPFLVENVQRIC 98
V +EV +K STA+ DVR V +L++ RS ++D D+ FL +NV+ +
Sbjct: 18 VHIEVHVKSQSTAKRSDVRTHVLSLLDRHSTVLRSFKWMD------FDNEFLTKNVESVT 71
Query: 99 VSDTDE----WVKNHDILLFWQVKPVVQVFQLSEEGPCE-ELSGDGQLSSFNEWILPAKE 153
++D +K H++ + +F L+++ P L + +LS+ N W+LPA E
Sbjct: 72 IADVTGPKLVDLKVHNL--------CIHIFTLNDDSPSTLNLEEEEELSAANLWLLPAVE 123
Query: 154 FDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKA 213
F G+WESLIYE G+K +LL Y ++ + F++K V+ L++WNR+VLLHGPPGTGKTSLCK
Sbjct: 124 FHGVWESLIYEEGIKTQLLDYVSTTIFFSDKNVDSNLIAWNRVVLLHGPPGTGKTSLCKG 183
Query: 214 LAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273
LAQKLSIR S RY Q VE+N+HSLFSKWFSESGKLV K+FQKIQE++++++ LVFVLI
Sbjct: 184 LAQKLSIRLSDRYAHSQFVEINSHSLFSKWFSESGKLVTKMFQKIQELIDDKDALVFVLI 243
Query: 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVD 333
DEVESL AAR AA +G+EPSD+IRVVN++LTQ+D++K PNV+ILTTSN+T ID+AFVD
Sbjct: 244 DEVESLTAARSAAQAGTEPSDAIRVVNSVLTQLDQIKRHPNVVILTTSNVTEKIDLAFVD 303
Query: 334 RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQ 393
RADIK Y+GPP+ +A + I S L+EL++ II Q + E+L +
Sbjct: 304 RADIKQYIGPPSAKAIFNIYLSSLEELMKRQIIYPRQQL---------VSLEELETMNFM 354
Query: 394 EADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLTVIDTARKE 453
E+D ++ L+ ++ GLSGR+LRK+PFLAHA + FL + K+
Sbjct: 355 ESDVTR-LSLCLMNISQRSVGLSGRALRKIPFLAHALYGKTSTMTLKGFLTAMEHAVNKQ 413
Query: 454 RSE 456
R E
Sbjct: 414 RQE 416
>sp|Q09535|PCH2_CAEEL Putative pachytene checkpoint protein 2 OS=Caenorhabditis elegans
GN=pch-2 PE=3 SV=1
Length = 424
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/315 (46%), Positives = 206/315 (65%), Gaps = 19/315 (6%)
Query: 121 VQVFQLSEEGPCEELSGD--GQLSSFNE--WILPAKEFDGMWESLIYESGLKQRLLHYAA 176
+ V++L ++GP + GD G S W LP EFD +WE+LIY+S LK ++ Y A
Sbjct: 95 IHVYKLHKDGPLSQNIGDDDGDESIIGSQLWQLPCVEFDSIWENLIYDSNLKNEVMSYVA 154
Query: 177 SALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236
+ +EK VN +++ NR++LL GPPGTGKTSLCK LAQ LSIR + +Y + ++E+N+
Sbjct: 155 ALARLSEKHVNTKIINVNRLILLTGPPGTGKTSLCKGLAQHLSIRMNDKYSKSVMLEINS 214
Query: 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSI 296
HSLFSKWFSESGKLV K+F +I E+ E+E +VFVLIDEVESL R+++ S SEPSD+I
Sbjct: 215 HSLFSKWFSESGKLVQKMFDQIDELAEDEKCMVFVLIDEVESLGMCRESSSSRSEPSDAI 274
Query: 297 RVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSC 356
R VNALLTQ+D+++ NV+IL TSN+ + +D A VDRADI VG P+ ARY +L+S
Sbjct: 275 RAVNALLTQIDRIRRRDNVLILCTSNLESTLDKALVDRADIVKNVGQPSDFARYSMLKSS 334
Query: 357 LQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDI--QEADRSQHFYKQLLEAAEACEG 414
+ EL R G++ + + P DI +A R++ F + L + A+ G
Sbjct: 335 IMELARIGVVID-NEVHTDYWPQ-----------DICDTKAPRNE-FTEILFKIAQEARG 381
Query: 415 LSGRSLRKLPFLAHA 429
LSGR++ LP L ++
Sbjct: 382 LSGRAISMLPTLVYS 396
>sp|P38126|PCH2_YEAST Pachytene checkpoint protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PCH2 PE=1 SV=2
Length = 564
Score = 195 bits (495), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 186/332 (56%), Gaps = 55/332 (16%)
Query: 149 LPAKEFDGMWESLIYESGLKQRLLHYAASAL---MFAEKGVN-----PFLVSWNRIVLLH 200
LP F+G WESL + + +K+RL YA +L F + G + L++ N+++L+H
Sbjct: 254 LPGTTFEGQWESLYFGNNIKERLYSYATISLKIARFKQTGDSNQEDITTLITNNKLLLVH 313
Query: 201 GPPGTGKTSLCKALAQKLSIR--FS-------SRYPQCQLVEVNAHSLFSKWFSESGKLV 251
GPPGTGKT+LCKAL QKLS+R FS + Y ++E++ +FSKWF ES K +
Sbjct: 314 GPPGTGKTTLCKALCQKLSVRREFSDGSDTIDTNYKGI-IIELSCARIFSKWFGESSKNI 372
Query: 252 AKLFQKIQEMVE-EENNLVFV--LIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308
+ +F+ I+E+++ E +F+ LIDEVE++A++R S +E +D IRVVN LLTQ+D+
Sbjct: 373 SIVFKDIEELLKVNEGRGIFICLLIDEVEAIASSRTNLSSRNESTDGIRVVNTLLTQLDR 432
Query: 309 LKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGII-- 366
LK N + L TSN+ ++D AFVDRAD YVG PT + IL+ C++E+I +GII
Sbjct: 433 LKKYHNFLALATSNLLDSLDDAFVDRADGVFYVGNPTAEGILHILKVCIEEMITSGIILF 492
Query: 367 ------SNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSL 420
F + Q +L +I K S DI SGR++
Sbjct: 493 HARSTGVKFFNKYQDILRKIAI---KCSTVDI-----------------------SGRTI 526
Query: 421 RKLPFLAHAALANPNGCDPSKFLLTVIDTARK 452
RKLP + + D +F+L + +ARK
Sbjct: 527 RKLPLMCLSEYFRTFPVDDDEFVLALAMSARK 558
>sp|Q9P3A7|CDC48_SCHPO Cell division cycle protein 48 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc48 PE=1 SV=2
Length = 815
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 101/203 (49%), Gaps = 19/203 (9%)
Query: 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217
WE + +K+ L +M+AEK + F V+ ++ VL GPPGTGKT L KA+A +
Sbjct: 496 WEDIGGLEEVKRELRETVQMPVMYAEKFLR-FGVTPSKGVLFFGPPGTGKTLLAKAIANE 554
Query: 218 LSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVE 277
S F + V L S WF ES V +F K + V +DE++
Sbjct: 555 CSANF---------ISVKGPELLSMWFGESESNVRDIFDKARAAAP-----CVVFLDELD 600
Query: 278 SLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRA 335
S+A AR A+ S RVVN LLT+MD + S NV ++ +N ID A + R
Sbjct: 601 SIAKARGASAGDS--GGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRL 658
Query: 336 DIKAYVGPPTLQARYEILRSCLQ 358
D YV P +AR+ IL++ L+
Sbjct: 659 DQLIYVPLPDEEARFSILQTQLR 681
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F G+ P R +L++GPPGTGKT + +A+A + F +N +
Sbjct: 249 LFKSIGIKP-----PRGILMYGPPGTGKTLMARAVANETGAFF---------FLINGPEI 294
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SK ES + K F++ E+N+ + IDE++S+A R+ E RVV
Sbjct: 295 MSKMAGESESNLRKAFEEA-----EKNSPAIIFIDEIDSIAPKREKTNGEVER----RVV 345
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAF--VDRADIKAYVGPPTLQARYEILR 354
+ LLT MD +K+ NV+++ +N +ID A R D + VG P R EILR
Sbjct: 346 SQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILR 402
>sp|Q5AWS6|CDC48_EMENI Cell division control protein 48 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=cdc48 PE=1 SV=2
Length = 823
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 99/204 (48%), Gaps = 18/204 (8%)
Query: 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217
WE + +K+ L+ + EK F +S +R VL +GPPGTGKT L KA+A +
Sbjct: 498 WEDIGGLEEVKRELIESVQYPVDHPEK-FQKFGLSPSRGVLFYGPPGTGKTMLAKAVANE 556
Query: 218 LSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVE 277
+ F + V L S WF ES + +F K + V +DE++
Sbjct: 557 CAANF---------ISVKGPELLSMWFGESESNIRDIFDKARAAAP-----CVVFLDELD 602
Query: 278 SLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRA 335
S+A +R ++ G S RVVN LLT+MD + S NV ++ +N +D A V R
Sbjct: 603 SIAKSRGGSV-GDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDAALVRPGRL 661
Query: 336 DIKAYVGPPTLQARYEILRSCLQE 359
D YV P +R IL++ L++
Sbjct: 662 DTLVYVPLPDQASREGILKAQLRK 685
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 25/176 (14%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F G+ P R +L++GPPGTGKT + +A+A + F +N +
Sbjct: 250 LFKSIGIKP-----PRGILMYGPPGTGKTLMARAVANETGAFF---------FLINGPEI 295
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SK ES + K F++ E+N+ + IDE++S+A R+ E RVV
Sbjct: 296 MSKMAGESESNLRKAFEEA-----EKNSPAIIFIDEIDSIAPKREKTNGEVER----RVV 346
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAF--VDRADIKAYVGPPTLQARYEIL 353
+ LLT MD +K+ NV+++ +N +ID A R D + +G P R EIL
Sbjct: 347 SQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEIL 402
>sp|P25694|CDC48_YEAST Cell division control protein 48 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC48 PE=1 SV=3
Length = 835
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESG 248
F +S ++ VL +GPPGTGKT L KA+A ++S F + V L S W+ ES
Sbjct: 516 FGLSPSKGVLFYGPPGTGKTLLAKAVATEVSANF---------ISVKGPELLSMWYGESE 566
Query: 249 KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308
+ +F K + V +DE++S+A AR +L G S RVVN LLT+MD
Sbjct: 567 SNIRDIFDKARAAAP-----TVVFLDELDSIAKARGGSL-GDAGGASDRVVNQLLTEMDG 620
Query: 309 LKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQE 359
+ + NV ++ +N ID A + R D YV P AR IL + L++
Sbjct: 621 MNAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRK 673
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 25/177 (14%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F G+ P R VL++GPPGTGKT + +A+A + F +N +
Sbjct: 239 LFKAIGIKP-----PRGVLMYGPPGTGKTLMARAVANETGAFF---------FLINGPEV 284
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SK ES + K F++ E+N + IDE++S+A R E RVV
Sbjct: 285 MSKMAGESESNLRKAFEEA-----EKNAPAIIFIDEIDSIAPKRDKTNGEVER----RVV 335
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAF--VDRADIKAYVGPPTLQARYEILR 354
+ LLT MD +K+ NV+++ +N +ID A R D + +G P R E+LR
Sbjct: 336 SQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEVLR 392
>sp|Q54PT2|VPS4_DICDI Vacuolar protein sorting-associated protein 4 OS=Dictyostelium
discoideum GN=vps4 PE=3 SV=1
Length = 444
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 25/187 (13%)
Query: 173 HYAASALMFAEKGVNPFLVSWNRI----VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228
Y A++F K P + + NR +LL+GPPGTGK+ L KA+A ++S F S P
Sbjct: 145 EYLKEAVIFPIKF--PQMFTGNRKPWKGILLYGPPGTGKSYLAKAVATEISSTFFSISP- 201
Query: 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALS 288
+ +KW +S KLV +LF EM E+NN V + IDEV+SL ++R +
Sbjct: 202 --------SDIVTKWLGDSEKLVKQLF----EMAREKNNSV-IFIDEVDSLCSSR----N 244
Query: 289 GSEPSDSIRVVNALLTQMDKLKS-SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQ 347
E + R+ L QM+ + + S +++L +NI +D+A R + + Y+G P Q
Sbjct: 245 DQESESARRIKTEFLIQMNGVGNDSDGILVLAATNIPWGLDLAIRRRFEKRIYIGLPEPQ 304
Query: 348 ARYEILR 354
AR ++ +
Sbjct: 305 ARAKMFQ 311
>sp|Q9SCN8|CD48D_ARATH Cell division control protein 48 homolog D OS=Arabidopsis thaliana
GN=CDC48D PE=1 SV=1
Length = 815
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 18/204 (8%)
Query: 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217
WE + +K+ L + EK F +S ++ VL +GPPG GKT L KA+A +
Sbjct: 480 WEDIGGLENVKRELQETVQYPVEHPEK-FEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538
Query: 218 LSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVE 277
Q + + L + WF ES V ++F K ++ + DE++
Sbjct: 539 C---------QANFISIKGPELLTMWFGESEANVREIFDKARQSAP-----CVLFFDELD 584
Query: 278 SLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRA 335
S+A R ++ G + RV+N LLT+MD + + V I+ +N ID A + R
Sbjct: 585 SIATQRGNSV-GDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRL 643
Query: 336 DIKAYVGPPTLQARYEILRSCLQE 359
D Y+ P ++RY+I +SCL++
Sbjct: 644 DQLIYIPLPDEESRYQIFKSCLRK 667
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 25/177 (14%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F GV P + +LL+GPPG+GKT + +A+A + F +N +
Sbjct: 233 LFKSIGVKP-----PKGILLYGPPGSGKTLIARAVANETGAFFFC---------INGPEI 278
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SK ES + K F++ E+N + IDE++S+A R+ E R+V
Sbjct: 279 MSKLAGESESNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTHGEVER----RIV 329
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAF--VDRADIKAYVGPPTLQARYEILR 354
+ LLT MD LKS +VI++ +N +ID A R D + +G P R E+LR
Sbjct: 330 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLR 386
>sp|Q9HPF0|CDCH_HALSA Protein CdcH OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=cdcH PE=3 SV=1
Length = 742
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 21/166 (12%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLF 255
VLL+GPPGTGKT + KA+A + + F S R PQ L SKW ES K + + F
Sbjct: 499 VLLYGPPGTGKTLMAKAVANETNANFISVRGPQ----------LLSKWVGESEKAIRQTF 548
Query: 256 QKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV 315
+K +++ + DE++SLA R G+ S+ RVVN LLT++D L+ V
Sbjct: 549 RKARQVAP-----TVIFFDELDSLAPGR-GQTGGNNVSE--RVVNQLLTELDGLEEMEEV 600
Query: 316 IILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQE 359
+++ +N ID A + R D VG P ++ R +IL+ Q+
Sbjct: 601 MVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQD 646
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 20/160 (12%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLLHGPPGTGKT L KA+A + S F S + + SK++ ES + + ++F+
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFS---------IAGPEIISKYYGESEQQLREIFE 276
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
+ +++ + IDE++S+A R+ E RVV LLT MD L+ VI
Sbjct: 277 DAK-----DDSPSIIFIDELDSIAPKREDVTGEVER----RVVAQLLTMMDGLEGRGQVI 327
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
++ +N A+D A R D + +G P R EIL+
Sbjct: 328 VIAATNRVDAVDPALRRPGRFDREIEIGVPDEIGREEILK 367
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 24/205 (11%)
Query: 158 WESLIYESGLKQRLLHYAASALMFAE--KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALA 215
WE + KQ L+ L + E + N + R +LL GPPGTGKT L KA+A
Sbjct: 454 WEDIGGLEHAKQELMEAVEWPLKYPEVFRAAN---IKPPRGILLFGPPGTGKTLLAKAVA 510
Query: 216 QKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDE 275
+ + F S V L SKW ES K V ++F+K +++ + DE
Sbjct: 511 NESNANFIS---------VKGPELLSKWVGESEKHVREMFRKARQVAP-----CVIFFDE 556
Query: 276 VESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--D 333
++SL A R+ + S ++ RVV+ LLT++D L+ +V+++ +N ID A +
Sbjct: 557 IDSL-APRRGGIGDSHVTE--RVVSQLLTELDGLEELKDVVVIAATNRPDMIDPALLRPG 613
Query: 334 RADIKAYVGPPTLQARYEILRSCLQ 358
R + Y+ PP +AR EI + L+
Sbjct: 614 RLERHIYIPPPDKKARVEIFKIHLR 638
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 25/176 (14%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F G+ P + VLL+GPPGTGKT + KA+A ++ F + ++ +
Sbjct: 207 LFQRLGIEP-----PKGVLLYGPPGTGKTLIAKAVANEVDAHF---------IPISGPEI 252
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SK++ ES + + ++F++ + EN + IDE++S+A R+ E RVV
Sbjct: 253 MSKYYGESEQRLREIFEEAK-----ENAPSIIFIDEIDSIAPKREEVTGEVER----RVV 303
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEIL 353
LL MD L++ +VI++ +N AID A R D + +G P + R EIL
Sbjct: 304 AQLLALMDGLEARGDVIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEIL 359
>sp|P46468|CDAT_PLAF7 Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate
3D7) GN=PF07_0047 PE=3 SV=2
Length = 1229
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 19/174 (10%)
Query: 187 NPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE 246
N F ++N+ +LL+GPPG GKT L KA+A + F + V L + WF E
Sbjct: 961 NKFNSNYNKGILLYGPPGCGKTLLAKAIANECKANF---------ISVKGPELLTMWFGE 1011
Query: 247 SGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306
S V LF K + + DE++SLA R + + ++ SD RV+N +LT++
Sbjct: 1012 SEANVRDLFDKARAASP-----CIIFFDEIDSLAKERNSN-TNNDASD--RVINQILTEI 1063
Query: 307 DKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQ 358
D + + I+ +N +D A R D Y+ P L++RY I ++ L+
Sbjct: 1064 DGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILK 1117
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 85/159 (53%), Gaps = 20/159 (12%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VL+HG PGTGKTS+ KA+A + S+ Y C + +N + SK ES + + K+F+
Sbjct: 564 VLMHGIPGTGKTSIAKAIANE-----SNAY--CYI--INGPEIMSKHIGESEQKLRKIFK 614
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
K E + IDE++S+A R + + E RVV+ LLT MD LK + NV+
Sbjct: 615 KASEKTP-----CIIFIDEIDSIANKRSKSNNELEK----RVVSQLLTLMDGLKKNNNVL 665
Query: 317 ILTTSNITAAIDIAF--VDRADIKAYVGPPTLQARYEIL 353
+L +N +ID A R D + + P Q RYEIL
Sbjct: 666 VLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEIL 704
>sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2
SV=1
Length = 807
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 18/204 (8%)
Query: 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217
WE + +K+ L + EK F +S ++ VL +GPPG GKT L KA+A +
Sbjct: 480 WEDIGGLENVKRELQETVQYPVEHPEK-FEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538
Query: 218 LSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVE 277
Q + V L + WF ES V ++F K ++ + DE++
Sbjct: 539 C---------QANFISVKGPELLTMWFGESEANVREIFDKARQSAP-----CVLFFDELD 584
Query: 278 SLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRA 335
S+A R +++ G + RV+N LLT+MD + + V I+ +N ID A + R
Sbjct: 585 SIATQRGSSV-GDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRL 643
Query: 336 DIKAYVGPPTLQARYEILRSCLQE 359
D Y+ P +R++I ++CL++
Sbjct: 644 DQLIYIPLPDEDSRHQIFKACLRK 667
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 25/177 (14%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F GV P + +LL+GPPG+GKT + +A+A + F +N +
Sbjct: 233 LFKSIGVKP-----PKGILLYGPPGSGKTLIARAVANETGAFFFC---------INGPEI 278
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SK ES + K F++ E+N + IDE++S+A R+ E R+V
Sbjct: 279 MSKLAGESESNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTHGEVER----RIV 329
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAF--VDRADIKAYVGPPTLQARYEILR 354
+ LLT MD LKS +VI++ +N +ID A R D + +G P R E+LR
Sbjct: 330 SQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLR 386
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP
PE=2 SV=1
Length = 805
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 18/204 (8%)
Query: 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217
WE + +K+ L + EK F +S ++ VL +GPPG GKT L KA+A +
Sbjct: 480 WEDIGGLENVKRELQETVQYPVEPPEK-FEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538
Query: 218 LSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVE 277
Q + V L + WF ES V ++F K ++ + DE++
Sbjct: 539 C---------QANFISVKGPELLTMWFGESEANVREIFDKARQSAP-----CVLFFDELD 584
Query: 278 SLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRA 335
S+A R ++ SG + RV+N LLT+MD + + V I+ +N ID A + R
Sbjct: 585 SIATQRGSS-SGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRL 643
Query: 336 DIKAYVGPPTLQARYEILRSCLQE 359
D Y+ P +R++I ++CL++
Sbjct: 644 DQLIYIPLPDEDSRHQIFKACLRK 667
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 25/176 (14%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F GV P + +LL+GPPG+GKT + +A+A + F +N +
Sbjct: 233 LFKSIGVKP-----PKGILLYGPPGSGKTLIARAVANETGAFFFC---------INGPEI 278
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SK ES + K F++ E+N + IDE++S+A R+ E R+V
Sbjct: 279 MSKLAGESESNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTHGEVER----RIV 329
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAF--VDRADIKAYVGPPTLQARYEIL 353
+ LLT MD LKS +VI++ +N +ID A R D + +G P R E+L
Sbjct: 330 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVL 385
>sp|O60058|AFG2_SCHPO ATPase family gene 2 protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=afg2 PE=3 SV=1
Length = 809
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 27/176 (15%)
Query: 181 FAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240
F+ GV P + VLL+GPPG KT KA+A + + F + V LF
Sbjct: 574 FSRLGVRP-----PKGVLLYGPPGCSKTITAKAIATETGLNF---------IAVKGPELF 619
Query: 241 SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300
K+ ES + V ++FQK ++ + DE+++L A R E + S RVV
Sbjct: 620 DKFVGESERAVRQVFQKARQASPS-----VIFFDEIDALTANR------GEDNSSDRVVA 668
Query: 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
ALL ++D +++ NV++L +N ID A + R D YVGPP +AR +I++
Sbjct: 669 ALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVK 724
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 118/245 (48%), Gaps = 37/245 (15%)
Query: 138 DGQLSSFNEWILPAKEFDGMWESLIYES--GLKQRLLHYA-ASALMFAEKGVNPFLVSWN 194
D S++N+ + FDG ++ + S GL+ ++ L F NP L +
Sbjct: 253 DRTQSAYNQGSEETQNFDGPPSAVTFSSIGGLQAQIAQIRDIVELPFQ----NPELFKFF 308
Query: 195 RI-----VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGK 249
I VLL+GPPGTGKT + +A+A + + Q+ ++ S+ K+ E+
Sbjct: 309 NIMPPRGVLLYGPPGTGKTMVMRAVAAEAN---------AQVFTIDGPSVVGKYLGETES 359
Query: 250 LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309
+ K+F+ + + +++F IDE+++LA R +S +E R V LLT +D +
Sbjct: 360 RLRKIFEDAR---AHQPSIIF--IDEIDALAPKRTEDVSEAES----RAVATLLTLLDGM 410
Query: 310 KSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIIS 367
++ V+++ +N +ID A R + + +G P AR +I++ L+ +G+ +
Sbjct: 411 ANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIK-----LLLSGVPN 465
Query: 368 NFQDC 372
D
Sbjct: 466 EINDA 470
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 25/177 (14%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F G++P + +LL+GPPGTGKT L +ALA ++ F + VN +
Sbjct: 237 LFQRLGIDP-----PKGILLYGPPGTGKTLLARALANEIGAYF---------ITVNGPEI 282
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SK++ ES + + ++F++ EEN + IDE++++A R+ E RVV
Sbjct: 283 MSKFYGESEQRIREIFKE-----AEENAPSIIFIDEIDAIAPKREDVTGEVEK----RVV 333
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
LLT MD +K VI++ +N AID A R D + + PP + R +IL+
Sbjct: 334 AQLLTLMDGIKGRGRVIVIGATNRPDAIDPALRRPGRFDREIEIRPPDTKGRKDILQ 390
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 24/177 (13%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F + GV P + +LL GPPGTGKT L KA+A + F + V +
Sbjct: 512 LFTKSGVTP-----PKGILLFGPPGTGKTMLAKAVATESGANF---------IAVRGPEI 557
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SKW ES K + ++F+K ++ + DE++S+A R LS ++ + R+V
Sbjct: 558 LSKWVGESEKAIREIFRKARQAAP-----TVIFFDEIDSIAPIR--GLS-TDSGVTERIV 609
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
N LL +MD + V+I+ +N +D A + R D YV PP AR+EIL+
Sbjct: 610 NQLLAEMDGIVPLNKVVIIAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILK 666
>sp|Q8SQK0|PRS8_ENCCU 26S protease regulatory subunit 8 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT6 PE=1 SV=1
Length = 453
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 17/160 (10%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLL+GPPGTGKT L +A+A + QC+ + V+ L K+ E +LV +LF
Sbjct: 233 VLLYGPPGTGKTLLARAVAH---------HTQCKFIRVSGSELVQKYIGEGSRLVRELF- 282
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
++ E+ + +DE++S+ + R + GS+ S+ R + LL Q+D +S N+
Sbjct: 283 ----IMAREHAPSIIFMDEIDSIGSTRGDSNKGSD-SEVQRTMLELLNQLDGFESHNNIK 337
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
++ +N +D A + R D K PP AR EIL+
Sbjct: 338 VIMATNRIDILDPALLRTGRIDRKIEFPPPNESARLEILK 377
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 17/160 (10%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
V+L+GPPGTGKT L +A+A + C+ + V+ L K+ E ++V +LF
Sbjct: 185 VILYGPPGTGKTLLARAVAH---------HTDCKFIRVSGAELVQKYIGEGSRMVRELF- 234
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
++ E+ + +DE++S+ + R SG S+ R + LL Q+D ++S N+
Sbjct: 235 ----VMAREHAPSIIFMDEIDSIGSTRVEG-SGGGDSEVQRTMLELLNQLDGFETSKNIK 289
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
I+ +N +D A + R D K PP++ AR EILR
Sbjct: 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILR 329
>sp|P32794|AFG2_YEAST ATPase family gene 2 protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=AFG2 PE=1 SV=1
Length = 780
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 20/172 (11%)
Query: 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKL 250
+S + VLL+GPPG KT KALA + I F + V +F+K+ ES +
Sbjct: 547 ISAPKGVLLYGPPGCSKTLTAKALATESGINF---------LAVKGPEIFNKYVGESERA 597
Query: 251 VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310
+ ++F+K + + DE+++L+ R GS S + V+ +LL ++D ++
Sbjct: 598 IREIFRKARSAAPS-----IIFFDEIDALSPDR----DGSSTSAANHVLTSLLNEIDGVE 648
Query: 311 SSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQEL 360
V+I+ +N ID A + R D YVGPP + AR EIL+ C ++
Sbjct: 649 ELKGVVIVAATNRPDEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTKKF 700
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 19/167 (11%)
Query: 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESG 248
F VS R +LLHGPPGTGKT L + +A ++ +N S+ SK+ E+
Sbjct: 274 FGVSPPRGILLHGPPGTGKTMLLRVVANT---------SNAHVLTINGPSIVSKYLGETE 324
Query: 249 KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308
+ +F + ++ + +++F IDE++S+A R SG S RVV LLT MD
Sbjct: 325 AALRDIFNEARKY---QPSIIF--IDEIDSIAPNRANDDSGEVES---RVVATLLTLMDG 376
Query: 309 LKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEIL 353
+ ++ V+++ +N ++D A R D + +G P + AR++IL
Sbjct: 377 MGAAGKVVVIAATNRPNSVDPALRRPGRFDQEVEIGIPDVDARFDIL 423
>sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS4 PE=1
SV=1
Length = 437
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 92/197 (46%), Gaps = 29/197 (14%)
Query: 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRI----VLLHGPPGTGKTSLCKA 213
WE + G K+ L + F P L NR +LL+GPPGTGK+ L KA
Sbjct: 132 WEDVAGLEGAKEALKEAVILPVKF------PHLFKGNRKPTSGILLYGPPGTGKSYLAKA 185
Query: 214 LAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273
+A + + F S V++ L SKW ES KLV +LF + EN + I
Sbjct: 186 VATEANSTFFS---------VSSSDLVSKWMGESEKLVKQLF-----AMARENKPSIIFI 231
Query: 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS-SPNVIILTTSNITAAIDIAFV 332
DEV++L R E S R+ LL QM+ + + S V++L +NI +D A
Sbjct: 232 DEVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 287
Query: 333 DRADIKAYVGPPTLQAR 349
R + + Y+ P L AR
Sbjct: 288 RRFERRIYIPLPDLAAR 304
>sp|Q6NH92|ARC_CORDI AAA ATPase forming ring-shaped complexes OS=Corynebacterium
diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype
gravis) GN=arc PE=3 SV=1
Length = 509
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLL+GPPG GKT + KA+A L+ R + + + V L +K+ E+ + + +F+
Sbjct: 229 VLLYGPPGCGKTLIAKAVANSLAQRIGAGN-RSYFINVKGPELLNKYVGETERRIRLIFE 287
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
+ +E+ EE V V DE+ES+ R + +S + VV LLT++D ++S NVI
Sbjct: 288 RARELA-EEGRPVIVFFDEMESIFRTRGSGVSSDMETT---VVPQLLTELDGVESLSNVI 343
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRT 363
I+ +N ID A + R D+K V P QA ++ L++ I T
Sbjct: 344 IIGATNREELIDPAILRPGRLDVKIRVERPDKQAARDVFARHLKQNIPT 392
>sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana
GN=CDC48E PE=1 SV=2
Length = 810
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 18/204 (8%)
Query: 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217
WE + +K+ L + EK F +S ++ VL +GPPG GKT L KA+A +
Sbjct: 479 WEDIGGLENVKRELQETVQYPVEHPEK-FEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 537
Query: 218 LSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVE 277
Q + V L + WF ES V ++F K ++ + DE++
Sbjct: 538 C---------QANFISVKGPELLTMWFGESEANVREIFDKARQSAP-----CVLFFDELD 583
Query: 278 SLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRA 335
S+A R + +G + RV+N LLT+MD + + V I+ +N ID A + R
Sbjct: 584 SIATQRGNS-AGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRL 642
Query: 336 DIKAYVGPPTLQARYEILRSCLQE 359
D Y+ P +R I ++CL++
Sbjct: 643 DQLIYIPLPDEDSRLNIFKACLRK 666
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 25/177 (14%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F GV P + +LL+GPPG+GKT + +A+A + F +N +
Sbjct: 232 LFKSIGVKP-----PKGILLYGPPGSGKTLIARAVANETGAFFFC---------INGPEI 277
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SK ES + K F++ E+N + IDE++S+A R+ E R+V
Sbjct: 278 MSKLAGESESNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTNGEVER----RIV 328
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAF--VDRADIKAYVGPPTLQARYEILR 354
+ LLT MD LKS +VI++ +N +ID A R D + +G P R E+LR
Sbjct: 329 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLR 385
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 178 ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237
A ++ + G++P R VLL+GPPGTGKT L KA+A F + VN
Sbjct: 195 ADLYEQIGIDP-----PRGVLLYGPPGTGKTMLVKAVANSTKAAF---------IRVNGS 240
Query: 238 SLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIR 297
K+ E ++V +F+ + EN + IDEV+S+A R A +GS+ + R
Sbjct: 241 EFVHKYLGEGPRMVRDVFR-----LARENAPSIIFIDEVDSIATKRFDAQTGSD-REVQR 294
Query: 298 VVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYE 351
++ LLTQMD S NV ++ +N +D A + + + P+L+ R E
Sbjct: 295 ILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRE 348
>sp|Q94BQ2|PRS8B_ARATH 26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana
GN=RPT6B PE=2 SV=1
Length = 419
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLL+GPPGTGKT L +A+A + C + V+ L K+ E ++V +LF
Sbjct: 198 VLLYGPPGTGKTLLARAVAH---------HTDCTFIRVSGSELVQKYIGEGSRMVRELF- 247
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
++ E+ + +DE++S+ +AR + SG+ S+ R + LL Q+D ++S +
Sbjct: 248 ----VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 303
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
+L +N +D A + R D K P ++R++IL+
Sbjct: 304 VLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILK 343
>sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana
GN=RPT6A PE=2 SV=1
Length = 419
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLL+GPPGTGKT L +A+A + C + V+ L K+ E ++V +LF
Sbjct: 198 VLLYGPPGTGKTLLARAVAH---------HTDCTFIRVSGSELVQKYIGEGSRMVRELF- 247
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
++ E+ + +DE++S+ +AR + SG+ S+ R + LL Q+D ++S +
Sbjct: 248 ----VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 303
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
+L +N +D A + R D K P ++R++IL+
Sbjct: 304 VLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILK 343
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 20/172 (11%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
++ + G++P R VLL+GPPGTGKT L KA+A + F + VN
Sbjct: 191 LYKQIGIDP-----PRGVLLYGPPGTGKTMLVKAVANSTTASF---------IRVNGSEF 236
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
K+ E ++V +F+ + EN+ + IDE++++A R A +G++ + R++
Sbjct: 237 VQKYLGEGPRMVRDVFR-----MARENSPAIIFIDEIDAIATKRFDAQTGAD-REVQRIL 290
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYE 351
LL QMD + S NV ++ +N +D A + + + P+L+ R E
Sbjct: 291 LELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRE 342
>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1
Length = 402
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 17/160 (10%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLL+GPPGTGKT L +A+A + +C + V+ L K+ E ++V +LF
Sbjct: 182 VLLYGPPGTGKTLLARAVAH---------HTECTFIRVSGSELVQKFIGEGSRMVRELF- 231
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
++ E+ + +DE++S+ ++R + SG + S+ R + LL Q+D +++ N+
Sbjct: 232 ----VMAREHAPSIIFMDEIDSIGSSRIESGSGGD-SEVQRTMLELLNQLDGFEATKNIK 286
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
++ +N +D A + R D K PP +AR +IL+
Sbjct: 287 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILK 326
>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8 OS=Drosophila melanogaster
GN=Pros45 PE=1 SV=2
Length = 405
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 17/160 (10%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLL+GPPGTGKT L +A+A + +C + V+ L K+ E ++V +LF
Sbjct: 185 VLLYGPPGTGKTLLARAVAH---------HTECTFIRVSGSELVQKFIGEGSRMVRELF- 234
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
++ E+ + +DE++S+ ++R + SG + S+ R + LL Q+D +++ N+
Sbjct: 235 ----VMAREHAPSIIFMDEIDSIGSSRIESGSGGD-SEVQRTMLELLNQLDGFEATKNIK 289
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
++ +N +D A + R D K PP +AR +IL+
Sbjct: 290 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILK 329
>sp|Q8IYT4|KATL2_HUMAN Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens
GN=KATNAL2 PE=1 SV=3
Length = 538
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 16/162 (9%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
+LL+GPPGTGKT L KA+A + F ++A ++ SKW +S KLV LF+
Sbjct: 290 LLLYGPPGTGKTLLAKAVATECKTTF---------FNISASTIVSKWRGDSEKLVRVLFE 340
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN-V 315
+ + +DE+ES+ + R A SG E S+R+ LL QMD L S + V
Sbjct: 341 LARYHAPST-----IFLDELESVMSQRGTA-SGGEHEGSLRMKTELLVQMDGLARSEDLV 394
Query: 316 IILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357
+L SN+ +D A + R + + V P+ +AR ++ L
Sbjct: 395 FVLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWL 436
>sp|P62198|PRS8_RAT 26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5
PE=1 SV=1
Length = 406
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 17/160 (10%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLL+GPPGTGKT L +A+A + C + V+ L K+ E ++V +LF
Sbjct: 186 VLLYGPPGTGKTLLARAVAH---------HTDCTFIRVSGSELVQKFIGEGARMVRELF- 235
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
++ E+ + +DE++S+ ++R SG + S+ R + LL Q+D +++ N+
Sbjct: 236 ----VMAREHAPSIIFMDEIDSIGSSRLEGGSGGD-SEVQRTMLELLNQLDGFEATKNIK 290
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
++ +N +D A + R D K PP +AR +IL+
Sbjct: 291 VIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILK 330
>sp|P62197|PRS8_PIG 26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1
Length = 406
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 17/160 (10%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLL+GPPGTGKT L +A+A + C + V+ L K+ E ++V +LF
Sbjct: 186 VLLYGPPGTGKTLLARAVAH---------HTDCTFIRVSGSELVQKFIGEGARMVRELF- 235
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
++ E+ + +DE++S+ ++R SG + S+ R + LL Q+D +++ N+
Sbjct: 236 ----VMAREHAPSIIFMDEIDSIGSSRLEGGSGGD-SEVQRTMLELLNQLDGFEATKNIK 290
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
++ +N +D A + R D K PP +AR +IL+
Sbjct: 291 VIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILK 330
>sp|P62196|PRS8_MOUSE 26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1
SV=1
Length = 406
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 17/160 (10%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLL+GPPGTGKT L +A+A + C + V+ L K+ E ++V +LF
Sbjct: 186 VLLYGPPGTGKTLLARAVAH---------HTDCTFIRVSGSELVQKFIGEGARMVRELF- 235
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
++ E+ + +DE++S+ ++R SG + S+ R + LL Q+D +++ N+
Sbjct: 236 ----VMAREHAPSIIFMDEIDSIGSSRLEGGSGGD-SEVQRTMLELLNQLDGFEATKNIK 290
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
++ +N +D A + R D K PP +AR +IL+
Sbjct: 291 VIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILK 330
>sp|P62195|PRS8_HUMAN 26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1
SV=1
Length = 406
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 17/160 (10%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLL+GPPGTGKT L +A+A + C + V+ L K+ E ++V +LF
Sbjct: 186 VLLYGPPGTGKTLLARAVAH---------HTDCTFIRVSGSELVQKFIGEGARMVRELF- 235
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
++ E+ + +DE++S+ ++R SG + S+ R + LL Q+D +++ N+
Sbjct: 236 ----VMAREHAPSIIFMDEIDSIGSSRLEGGSGGD-SEVQRTMLELLNQLDGFEATKNIK 290
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
++ +N +D A + R D K PP +AR +IL+
Sbjct: 291 VIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILK 330
>sp|P62194|PRS8_BOVIN 26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1
Length = 406
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 17/160 (10%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLL+GPPGTGKT L +A+A + C + V+ L K+ E ++V +LF
Sbjct: 186 VLLYGPPGTGKTLLARAVAH---------HTDCTFIRVSGSELVQKFIGEGARMVRELF- 235
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
++ E+ + +DE++S+ ++R SG + S+ R + LL Q+D +++ N+
Sbjct: 236 ----VMAREHAPSIIFMDEIDSIGSSRLEGGSGGD-SEVQRTMLELLNQLDGFEATKNIK 290
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
++ +N +D A + R D K PP +AR +IL+
Sbjct: 291 VIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILK 330
>sp|C3PGA0|ARC_CORA7 AAA ATPase forming ring-shaped complexes OS=Corynebacterium
aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1)
GN=arc PE=3 SV=1
Length = 524
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 13/165 (7%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VLL+GPPG GKT + KA+A LS+ + P + V L +K+ E+ + + +F+
Sbjct: 229 VLLYGPPGCGKTLIAKAVAHSLSVSLGATAP-SYFLNVKGPELLNKFVGETERRIRLIFE 287
Query: 257 KIQEMVEE-----ENNLVFVLIDEVESLAAARKAALSGSEPSD-SIRVVNALLTQMDKLK 310
+ +E+ E V + DE+ES+ R + +S SD VV LLT++D ++
Sbjct: 288 RARELASEPTEDGSQRPVIIFFDEMESIFRTRGSGVS----SDMETTVVPQLLTELDGVE 343
Query: 311 SSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEIL 353
NVI++ +N ID A + R DIK V PT Q EI
Sbjct: 344 KLSNVIVIGATNREELIDPAIMRPGRLDIKIRVNRPTKQGAREIF 388
>sp|Q7KN62|TERA_DROME Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila
melanogaster GN=TER94 PE=1 SV=1
Length = 801
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESG 248
F + +R VL +GPPG GKT L KA+A + Q + V L + WF ES
Sbjct: 503 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLTMWFGESE 553
Query: 249 KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308
V +F K + + DE++S+A AR + G + RV+N +LT+MD
Sbjct: 554 ANVRDIFDKARSAAP-----CVLFFDELDSIAKARGGNV-GDAGGAADRVINQILTEMDG 607
Query: 309 LKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQE 359
+ + NV I+ +N ID A + R D Y+ P ++R IL++ L++
Sbjct: 608 MGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRK 660
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 25/177 (14%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F GV P R +L++GPPGTGKT + +A+A + F +N +
Sbjct: 226 LFKAIGVKP-----PRGILMYGPPGTGKTLIARAVANETGAFF---------FLINGPEI 271
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SK ES + K F++ E+N+ + IDE++++A R E R+V
Sbjct: 272 MSKLAGESESNLRKAFEEA-----EKNSPAIIFIDEIDAIAPKRDKTHGEVER----RIV 322
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAF--VDRADIKAYVGPPTLQARYEILR 354
+ LLT MD +K S ++I++ +N +ID A R D + +G P R E+LR
Sbjct: 323 SQLLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLR 379
>sp|P46467|VPS4B_MOUSE Vacuolar protein sorting-associated protein 4B OS=Mus musculus
GN=Vps4b PE=1 SV=2
Length = 444
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 24/215 (11%)
Query: 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKL 254
R +LL GPPGTGK+ L KA+A + + +++ L SKW ES KLV L
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSISSSDLVSKWLGESEKLVKNL 219
Query: 255 FQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-SSP 313
FQ + EN + IDE++SL +R S +E + R+ L QM + +
Sbjct: 220 FQ-----LARENKPSIIFIDEIDSLCGSR----SENESEAARRIKTEFLVQMQGVGVDND 270
Query: 314 NVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQD-- 371
+++L +NI +D A R + + Y+ P AR + R L + ++FQ+
Sbjct: 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELG 330
Query: 372 --CDQSMLPNFSIL-KEKLSNPDIQEADRSQHFYK 403
D + SI+ ++ L P +++ + HF K
Sbjct: 331 RKTDGYSGADISIIVRDALMQP-VRKVQSATHFKK 364
>sp|Q9LET7|CI111_ARATH Calmodulin-interacting protein 111 OS=Arabidopsis thaliana
GN=CIP111 PE=1 SV=1
Length = 1022
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 27/224 (12%)
Query: 142 SSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNR---IVL 198
S+ E IL + + WE + ++ +K +L+ A+ + +K + F R +L
Sbjct: 709 SAMREVILEVPKVN--WEDVGGQNEVKNQLME----AVEWPQKHQDAFKRIGTRPPSGIL 762
Query: 199 LHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKI 258
+ GPPG KT + +A+A + + F + V LFSKW ES K V LF K
Sbjct: 763 MFGPPGCSKTLMARAVASEAKLNF---------LAVKGPELFSKWVGESEKAVRSLFAKA 813
Query: 259 QEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIIL 318
+ N + DE++SLA+ R G SD RV++ LL ++D L V ++
Sbjct: 814 R-----ANAPSIIFFDEIDSLASIRGKENDGVSVSD--RVMSQLLVELDGLHQRVGVTVI 866
Query: 319 TTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQEL 360
+N ID A + R D YVGPP R IL+ L+++
Sbjct: 867 AATNRPDKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLRKI 910
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 22/176 (12%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VL+HGPPGTGKTSL + A+ + F S VN + S++ ES K + ++F+
Sbjct: 421 VLIHGPPGTGKTSLARTFARHSGVNFFS---------VNGPEIISQYLGESEKALDEVFR 471
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316
V ID+++++A ARK G E S R+V LL MD + + V+
Sbjct: 472 SASNATP-----AVVFIDDLDAIAPARKEG--GEELSQ--RMVATLLNLMDGISRTDGVV 522
Query: 317 ILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQ 370
++ +N +I+ A R D + +G P+ R +IL L+ + + +SN Q
Sbjct: 523 VIAATNRPDSIEPALRRPGRLDREIEIGVPSSTQRSDILHIILRGMRHS--LSNIQ 576
>sp|O61577|KTNA1_STRPU Katanin p60 ATPase-containing subunit A1 OS=Strongylocentrotus
purpuratus GN=KATNA1 PE=1 SV=1
Length = 516
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 24/171 (14%)
Query: 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256
VL+ GPPGTGKT L KA+A + F V++ SL SK+ ES KLV LF+
Sbjct: 270 VLMVGPPGTGKTMLAKAVATECGTTF---------FNVSSASLTSKYHGESEKLVRLLFE 320
Query: 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL------- 309
+ + IDE++S+ + R +GSE S RV + LL QMD +
Sbjct: 321 MARFYAPS-----TIFIDEIDSICSKRG---TGSEHEASRRVKSELLIQMDGVSGPSAGE 372
Query: 310 KSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360
+SS V++L +N ID A R + + Y+ P + R ++LR L+E+
Sbjct: 373 ESSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPEIDGREQLLRINLKEV 423
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat
PE=1 SV=1
Length = 745
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 24/177 (13%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F G+ P ++ LL+GPPG GKT L KA+A + + F + + +
Sbjct: 492 VFKRLGIRP-----SKGFLLYGPPGVGKTLLAKAVATESNANF---------ISIKGPEV 537
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SKW ES K + ++F+K +++ V +DE++S+A R S+ + R+V
Sbjct: 538 LSKWVGESEKAIREIFKKAKQVAP-----AIVFLDEIDSIAPRRGTT---SDSGVTERIV 589
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILR 354
N LLT +D ++ V+++ +N +D A + R D Y+ PP +AR IL+
Sbjct: 590 NQLLTSLDGIEVMNGVVVIGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILK 646
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 25/176 (14%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F G+ P + V+L+GPPGTGKT + +A+A + F S +N +
Sbjct: 215 LFERLGITP-----PKGVILYGPPGTGKTLIARAVANESGANFLS---------INGPEI 260
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SK++ +S + + ++F K +E + IDE++S+A R+ E RVV
Sbjct: 261 MSKYYGQSEQKLREIFSKAEETAPS-----IIFIDEIDSIAPKREEVQGEVER----RVV 311
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEIL 353
LLT MD +K +VI++ +N AID A R D + +G P R EIL
Sbjct: 312 AQLLTLMDGMKERGHVIVIGATNRIDAIDPALRRPGRFDREIEIGVPDRNGRKEIL 367
>sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum ATPase homolog 2
OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2
Length = 810
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESG 248
F + +R VL +GPPG GKT L KA+A + Q + + L + WF ES
Sbjct: 511 FGMQPSRGVLFYGPPGCGKTLLAKAIANEC---------QANFISIKGPELLTMWFGESE 561
Query: 249 KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308
V +F K + + DE++S+A AR ++ G + RV+N +LT+MD
Sbjct: 562 ANVRDVFDKARAAAP-----CVLFFDELDSIAKARGGSV-GDAGGAADRVINQVLTEMDG 615
Query: 309 LKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQE 359
+ + NV I+ +N ID A + R D Y+ P +R +I ++ L++
Sbjct: 616 MNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQIFKASLRK 668
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 25/177 (14%)
Query: 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239
+F GV P R +LL GPPGTGKT + +A+A + F +N +
Sbjct: 234 LFKAIGVKP-----PRGILLFGPPGTGKTLIARAVANETGAFF---------FLINGPEI 279
Query: 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299
SK ES + K F + E+N+ + IDE++++A R+ A E R+V
Sbjct: 280 MSKMSGESESNLRKAFAEC-----EKNSPAILFIDEIDAIAPKREKAHGEVEK----RIV 330
Query: 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAF--VDRADIKAYVGPPTLQARYEILR 354
+ LLT MD LK+ +V+++ +N +ID A R D + +G P R EILR
Sbjct: 331 SQLLTLMDGLKTRAHVVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILR 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,720,373
Number of Sequences: 539616
Number of extensions: 6950012
Number of successful extensions: 30171
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 633
Number of HSP's that attempted gapping in prelim test: 28607
Number of HSP's gapped (non-prelim): 1639
length of query: 459
length of database: 191,569,459
effective HSP length: 121
effective length of query: 338
effective length of database: 126,275,923
effective search space: 42681261974
effective search space used: 42681261974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)