Query 012655
Match_columns 459
No_of_seqs 446 out of 2969
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:55:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0744 AAA+-type ATPase [Post 100.0 6E-69 1.3E-73 507.5 32.3 403 35-458 13-423 (423)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-41 2.9E-46 348.7 16.3 330 35-451 335-676 (693)
3 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-39 2.5E-44 313.8 20.4 246 152-454 144-397 (406)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 5E-37 1.1E-41 310.9 16.6 236 156-449 508-769 (802)
5 COG1223 Predicted ATPase (AAA+ 100.0 2.2E-36 4.7E-41 279.0 18.6 275 108-448 67-354 (368)
6 KOG0738 AAA+-type ATPase [Post 100.0 2.7E-33 5.9E-38 271.3 21.3 236 157-450 210-470 (491)
7 KOG0734 AAA+-type ATPase conta 100.0 5.2E-33 1.1E-37 277.9 13.8 240 150-449 295-541 (752)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 7.8E-33 1.7E-37 280.6 14.3 211 157-427 188-407 (802)
9 KOG0737 AAA+-type ATPase [Post 100.0 3.1E-31 6.8E-36 257.0 19.0 225 148-427 81-307 (386)
10 COG0464 SpoVK ATPases of the A 100.0 2E-31 4.3E-36 281.4 16.4 334 36-448 135-482 (494)
11 KOG0739 AAA+-type ATPase [Post 100.0 4.2E-32 9.2E-37 254.8 10.0 216 149-427 127-346 (439)
12 PTZ00454 26S protease regulato 100.0 1.6E-30 3.4E-35 264.6 22.1 242 155-453 141-390 (398)
13 KOG0736 Peroxisome assembly fa 100.0 6.2E-31 1.3E-35 272.7 16.8 240 149-450 666-933 (953)
14 KOG0731 AAA+-type ATPase conta 100.0 9.4E-31 2E-35 276.5 17.7 241 156-451 308-555 (774)
15 TIGR01243 CDC48 AAA family ATP 100.0 6.9E-31 1.5E-35 288.8 16.8 235 156-449 450-710 (733)
16 PTZ00361 26 proteosome regulat 100.0 7.3E-30 1.6E-34 261.4 23.0 249 154-459 178-434 (438)
17 CHL00195 ycf46 Ycf46; Provisio 100.0 6.7E-30 1.4E-34 265.4 23.0 236 156-450 225-464 (489)
18 KOG0728 26S proteasome regulat 100.0 5.2E-30 1.1E-34 235.7 17.3 245 151-452 139-391 (404)
19 KOG0727 26S proteasome regulat 100.0 2.1E-30 4.6E-35 238.5 14.3 248 149-453 145-400 (408)
20 PRK03992 proteasome-activating 100.0 1.6E-29 3.4E-34 258.2 21.1 244 155-455 127-378 (389)
21 KOG0652 26S proteasome regulat 100.0 1.3E-29 2.8E-34 234.3 14.9 246 153-455 165-418 (424)
22 TIGR01241 FtsH_fam ATP-depende 100.0 9.3E-29 2E-33 260.7 21.0 238 156-450 52-296 (495)
23 KOG0726 26S proteasome regulat 100.0 8.7E-30 1.9E-34 238.6 10.6 248 154-458 180-435 (440)
24 KOG0735 AAA+-type ATPase [Post 100.0 4.3E-29 9.4E-34 256.9 11.1 211 157-427 665-881 (952)
25 COG0465 HflB ATP-dependent Zn 100.0 2.1E-28 4.5E-33 254.8 15.5 238 156-450 147-391 (596)
26 KOG0729 26S proteasome regulat 100.0 1E-28 2.3E-33 228.9 11.7 248 152-456 170-425 (435)
27 TIGR01242 26Sp45 26S proteasom 100.0 2.3E-27 5E-32 241.0 22.1 238 155-449 118-363 (364)
28 TIGR03689 pup_AAA proteasome A 100.0 5.9E-27 1.3E-31 243.1 22.7 274 155-451 178-480 (512)
29 CHL00176 ftsH cell division pr 100.0 3.5E-27 7.5E-32 252.3 21.5 238 156-450 180-424 (638)
30 PRK10733 hflB ATP-dependent me 99.9 1.4E-25 3.1E-30 242.2 23.0 241 152-449 145-392 (644)
31 KOG0740 AAA+-type ATPase [Post 99.9 4.1E-26 9E-31 228.9 14.4 236 156-449 150-404 (428)
32 KOG0741 AAA+-type ATPase [Post 99.9 4.3E-27 9.3E-32 235.5 5.3 275 35-354 385-683 (744)
33 KOG0741 AAA+-type ATPase [Post 99.9 1.4E-25 3.1E-30 224.6 16.2 222 180-449 247-490 (744)
34 PLN00020 ribulose bisphosphate 99.9 2.2E-24 4.8E-29 211.6 19.5 153 192-359 146-313 (413)
35 CHL00206 ycf2 Ycf2; Provisiona 99.9 5.1E-25 1.1E-29 247.8 16.8 203 192-452 1628-1880(2281)
36 KOG0651 26S proteasome regulat 99.9 9.2E-26 2E-30 213.6 9.0 240 157-453 130-377 (388)
37 KOG0730 AAA+-type ATPase [Post 99.9 6E-24 1.3E-28 219.1 15.9 201 191-449 215-416 (693)
38 TIGR01243 CDC48 AAA family ATP 99.9 2.2E-23 4.7E-28 229.5 20.5 234 157-450 176-436 (733)
39 KOG0732 AAA+-type ATPase conta 99.9 1.1E-22 2.5E-27 220.6 14.5 223 155-427 261-485 (1080)
40 KOG0742 AAA+-type ATPase [Post 99.9 1.9E-21 4.1E-26 190.0 19.1 262 156-453 352-616 (630)
41 TIGR02881 spore_V_K stage V sp 99.8 5.1E-19 1.1E-23 171.8 19.6 182 157-359 4-193 (261)
42 CHL00181 cbbX CbbX; Provisiona 99.8 7.5E-19 1.6E-23 172.2 20.0 185 156-360 20-212 (287)
43 PF00004 AAA: ATPase family as 99.8 3.1E-19 6.8E-24 154.1 11.5 130 197-343 1-132 (132)
44 TIGR02880 cbbX_cfxQ probable R 99.8 1.4E-17 3.1E-22 163.2 18.7 185 156-360 19-211 (284)
45 PF05496 RuvB_N: Holliday junc 99.8 4.3E-18 9.3E-23 157.5 11.2 188 157-427 22-225 (233)
46 COG2255 RuvB Holliday junction 99.8 3.1E-17 6.7E-22 154.6 17.1 210 157-449 24-251 (332)
47 KOG0735 AAA+-type ATPase [Post 99.7 6.4E-17 1.4E-21 167.7 19.1 235 160-454 409-653 (952)
48 TIGR00635 ruvB Holliday juncti 99.7 2.8E-16 6.1E-21 155.9 20.1 209 157-448 2-228 (305)
49 PRK00080 ruvB Holliday junctio 99.7 5.1E-16 1.1E-20 155.7 20.0 210 157-449 23-250 (328)
50 TIGR00362 DnaA chromosomal rep 99.7 5.1E-16 1.1E-20 160.2 17.0 141 195-359 137-283 (405)
51 PRK00149 dnaA chromosomal repl 99.7 1E-15 2.2E-20 160.0 17.3 196 195-450 149-350 (450)
52 COG2256 MGS1 ATPase related to 99.7 9.1E-16 2E-20 151.2 15.6 127 196-359 50-178 (436)
53 PRK14956 DNA polymerase III su 99.7 4.1E-15 9E-20 152.9 19.1 165 157-359 16-195 (484)
54 TIGR00763 lon ATP-dependent pr 99.7 1.3E-15 2.9E-20 168.5 16.5 166 159-359 320-507 (775)
55 KOG0743 AAA+-type ATPase [Post 99.7 5.4E-16 1.2E-20 155.2 11.9 177 156-359 198-385 (457)
56 PRK07003 DNA polymerase III su 99.6 4.7E-15 1E-19 158.0 18.3 165 157-359 14-193 (830)
57 PRK14088 dnaA chromosomal repl 99.6 3.4E-15 7.4E-20 154.9 17.0 307 64-450 17-333 (440)
58 KOG0736 Peroxisome assembly fa 99.6 2.4E-15 5.1E-20 157.5 14.1 202 194-453 431-657 (953)
59 PRK12323 DNA polymerase III su 99.6 5.2E-15 1.1E-19 155.8 16.4 165 157-359 14-198 (700)
60 TIGR02639 ClpA ATP-dependent C 99.6 7.4E-15 1.6E-19 161.8 17.9 175 156-360 179-361 (731)
61 PRK12422 chromosomal replicati 99.6 6.9E-15 1.5E-19 152.4 16.1 139 196-359 143-286 (445)
62 PRK14962 DNA polymerase III su 99.6 2.3E-14 4.9E-19 149.4 19.3 165 157-359 12-191 (472)
63 PRK07994 DNA polymerase III su 99.6 3.3E-14 7.1E-19 151.9 20.5 165 157-359 14-193 (647)
64 PRK14960 DNA polymerase III su 99.6 2.9E-14 6.2E-19 150.6 19.6 211 157-444 13-238 (702)
65 TIGR02928 orc1/cdc6 family rep 99.6 4.9E-14 1.1E-18 143.4 20.2 238 159-450 15-275 (365)
66 PRK14961 DNA polymerase III su 99.6 4.2E-14 9E-19 143.7 19.0 213 157-446 14-241 (363)
67 PRK14949 DNA polymerase III su 99.6 5E-14 1.1E-18 152.9 19.5 165 157-359 14-193 (944)
68 PRK14958 DNA polymerase III su 99.6 4E-14 8.7E-19 149.0 17.7 213 157-446 14-241 (509)
69 PRK08691 DNA polymerase III su 99.6 4.5E-14 9.8E-19 150.3 17.9 213 157-446 14-241 (709)
70 PRK14087 dnaA chromosomal repl 99.6 5.3E-14 1.1E-18 146.3 17.9 198 196-449 143-348 (450)
71 PRK04195 replication factor C 99.6 5.9E-14 1.3E-18 147.8 18.5 162 157-359 12-175 (482)
72 PRK14964 DNA polymerase III su 99.6 6.9E-14 1.5E-18 145.3 18.5 212 157-445 11-237 (491)
73 PRK06645 DNA polymerase III su 99.6 1.2E-13 2.7E-18 144.5 20.2 215 157-446 19-253 (507)
74 KOG0989 Replication factor C, 99.6 2.6E-14 5.7E-19 136.3 13.6 165 157-359 34-203 (346)
75 PRK05342 clpX ATP-dependent pr 99.6 7.9E-14 1.7E-18 142.8 18.1 197 149-356 61-324 (412)
76 PLN03025 replication factor C 99.6 6.4E-14 1.4E-18 140.0 16.5 161 157-359 11-173 (319)
77 PRK14086 dnaA chromosomal repl 99.6 6.3E-14 1.4E-18 147.9 17.0 141 196-359 316-461 (617)
78 PRK12402 replication factor C 99.6 1.2E-13 2.6E-18 138.8 18.1 167 157-359 13-199 (337)
79 PRK11034 clpA ATP-dependent Cl 99.6 1.2E-13 2.6E-18 151.0 19.3 177 155-361 182-366 (758)
80 PRK00411 cdc6 cell division co 99.6 2.1E-13 4.6E-18 140.2 20.2 231 159-449 30-282 (394)
81 PRK13342 recombination factor 99.6 2E-13 4.4E-18 141.1 19.4 153 157-360 10-167 (413)
82 TIGR02902 spore_lonB ATP-depen 99.6 6E-14 1.3E-18 148.9 15.6 222 157-447 63-330 (531)
83 PRK07940 DNA polymerase III su 99.5 1.4E-13 3E-18 140.4 16.6 171 156-354 2-186 (394)
84 KOG2028 ATPase related to the 99.5 2.5E-13 5.4E-18 131.9 17.1 196 197-448 165-367 (554)
85 PRK14963 DNA polymerase III su 99.5 2.9E-13 6.4E-18 142.2 19.1 165 157-359 12-190 (504)
86 PRK14957 DNA polymerase III su 99.5 4.4E-13 9.4E-18 141.3 20.3 165 157-359 14-193 (546)
87 PRK14952 DNA polymerase III su 99.5 3.3E-13 7.1E-18 143.4 19.3 165 157-359 11-192 (584)
88 COG0593 DnaA ATPase involved i 99.5 3.4E-13 7.5E-18 136.1 18.1 240 62-359 14-259 (408)
89 PRK14951 DNA polymerase III su 99.5 1.2E-13 2.7E-18 147.2 15.4 212 157-445 14-245 (618)
90 TIGR03420 DnaA_homol_Hda DnaA 99.5 2.4E-13 5.1E-18 128.9 15.7 182 194-446 38-225 (226)
91 TIGR00382 clpX endopeptidase C 99.5 2.9E-13 6.3E-18 138.0 17.2 245 149-427 67-380 (413)
92 TIGR03345 VI_ClpV1 type VI sec 99.5 3E-13 6.6E-18 150.3 18.8 175 156-360 184-366 (852)
93 PRK08084 DNA replication initi 99.5 4.2E-13 9.1E-18 128.2 17.3 182 195-447 46-234 (235)
94 PRK07764 DNA polymerase III su 99.5 3.6E-13 7.8E-18 148.2 19.0 165 157-359 13-194 (824)
95 PRK14969 DNA polymerase III su 99.5 2.1E-13 4.7E-18 144.3 16.6 213 157-446 14-241 (527)
96 TIGR00390 hslU ATP-dependent p 99.5 5.3E-13 1.1E-17 134.6 18.4 190 150-353 3-342 (441)
97 CHL00081 chlI Mg-protoporyphyr 99.5 4E-13 8.7E-18 134.1 17.3 265 157-458 15-331 (350)
98 PRK05563 DNA polymerase III su 99.5 3.6E-13 7.8E-18 143.6 18.0 211 157-444 14-239 (559)
99 PF00308 Bac_DnaA: Bacterial d 99.5 2E-13 4.4E-18 128.9 13.8 142 196-360 36-182 (219)
100 TIGR02030 BchI-ChlI magnesium 99.5 3.4E-13 7.5E-18 134.6 16.1 264 158-458 3-318 (337)
101 COG0466 Lon ATP-dependent Lon 99.5 5.2E-14 1.1E-18 147.4 10.1 164 160-358 324-509 (782)
102 PRK06893 DNA replication initi 99.5 4E-13 8.6E-18 127.9 15.0 181 195-446 40-227 (229)
103 PRK05201 hslU ATP-dependent pr 99.5 8.2E-13 1.8E-17 133.3 17.6 191 150-354 6-345 (443)
104 PRK07133 DNA polymerase III su 99.5 1.1E-12 2.4E-17 141.0 19.4 165 157-359 16-192 (725)
105 PRK10787 DNA-binding ATP-depen 99.5 5.6E-13 1.2E-17 146.7 17.5 164 159-358 322-507 (784)
106 KOG2004 Mitochondrial ATP-depe 99.5 3.3E-14 7.1E-19 148.1 7.2 174 159-359 411-598 (906)
107 PRK13407 bchI magnesium chelat 99.5 7.6E-13 1.6E-17 131.9 16.4 262 157-455 6-312 (334)
108 PRK14959 DNA polymerase III su 99.5 6.8E-13 1.5E-17 140.7 16.7 165 157-359 14-193 (624)
109 PRK14965 DNA polymerase III su 99.5 8.4E-13 1.8E-17 141.3 17.5 165 157-359 14-193 (576)
110 PRK13341 recombination factor 99.5 8.6E-13 1.9E-17 143.6 17.6 154 157-360 26-184 (725)
111 PHA02544 44 clamp loader, smal 99.5 4.8E-12 1E-16 126.2 21.5 158 157-360 19-176 (316)
112 TIGR02397 dnaX_nterm DNA polym 99.5 1.5E-12 3.2E-17 132.0 17.6 165 157-359 12-191 (355)
113 PTZ00112 origin recognition co 99.5 3.8E-12 8.2E-17 136.7 20.6 178 159-359 755-951 (1164)
114 PRK10865 protein disaggregatio 99.5 7E-13 1.5E-17 147.9 15.8 175 156-360 175-357 (857)
115 TIGR02640 gas_vesic_GvpN gas v 99.5 3.2E-12 7E-17 124.1 18.3 139 194-357 21-198 (262)
116 COG2812 DnaX DNA polymerase II 99.5 5.1E-13 1.1E-17 138.6 13.4 210 157-443 14-238 (515)
117 PRK05896 DNA polymerase III su 99.5 2.4E-12 5.1E-17 136.0 18.4 165 157-359 14-193 (605)
118 PRK09111 DNA polymerase III su 99.4 5.8E-12 1.3E-16 134.6 20.7 165 157-359 22-206 (598)
119 PRK05642 DNA replication initi 99.4 1.5E-12 3.2E-17 124.3 14.4 181 195-446 46-232 (234)
120 PRK08903 DnaA regulatory inact 99.4 3.2E-12 7E-17 121.4 16.7 177 194-447 42-224 (227)
121 PRK08727 hypothetical protein; 99.4 2.4E-12 5.3E-17 122.8 15.8 182 195-447 42-229 (233)
122 PRK08451 DNA polymerase III su 99.4 1.8E-12 3.8E-17 136.1 15.6 165 157-359 12-191 (535)
123 PRK14953 DNA polymerase III su 99.4 4.5E-12 9.7E-17 132.8 18.5 165 157-359 14-193 (486)
124 CHL00095 clpC Clp protease ATP 99.4 3.2E-12 7E-17 142.6 18.3 175 155-360 175-357 (821)
125 COG1474 CDC6 Cdc6-related prot 99.4 8.9E-12 1.9E-16 126.0 19.4 227 161-447 19-263 (366)
126 PRK06647 DNA polymerase III su 99.4 5.8E-12 1.3E-16 134.0 18.7 165 157-359 14-193 (563)
127 TIGR03346 chaperone_ClpB ATP-d 99.4 1.6E-12 3.5E-17 145.4 14.4 176 155-360 169-352 (852)
128 PRK11034 clpA ATP-dependent Cl 99.4 4.3E-12 9.3E-17 138.8 17.3 168 160-361 459-670 (758)
129 PRK06620 hypothetical protein; 99.4 7.6E-12 1.6E-16 117.7 16.3 164 195-446 45-213 (214)
130 PRK06305 DNA polymerase III su 99.4 4.1E-12 8.9E-17 132.2 15.6 165 157-359 15-195 (451)
131 TIGR01650 PD_CobS cobaltochela 99.4 2.3E-12 5.1E-17 126.8 12.7 137 194-357 64-233 (327)
132 PRK00440 rfc replication facto 99.4 1.2E-11 2.5E-16 123.3 17.4 161 157-359 15-176 (319)
133 PRK14954 DNA polymerase III su 99.4 6.3E-12 1.4E-16 134.6 16.1 165 157-359 14-201 (620)
134 TIGR02639 ClpA ATP-dependent C 99.4 7.2E-12 1.6E-16 138.2 17.1 170 157-360 452-665 (731)
135 PRK14970 DNA polymerase III su 99.4 2.3E-11 4.9E-16 124.0 19.4 165 157-359 15-182 (367)
136 PRK14955 DNA polymerase III su 99.4 5E-12 1.1E-16 130.0 13.9 165 157-359 14-201 (397)
137 PRK14950 DNA polymerase III su 99.4 1.9E-11 4.2E-16 131.4 19.0 165 157-359 14-194 (585)
138 PF05673 DUF815: Protein of un 99.4 2.5E-11 5.5E-16 114.1 17.1 161 157-360 25-210 (249)
139 PRK14948 DNA polymerase III su 99.4 1.3E-11 2.8E-16 132.8 17.1 165 157-359 14-195 (620)
140 smart00350 MCM minichromosome 99.3 1E-11 2.3E-16 131.4 14.7 230 195-450 237-505 (509)
141 COG0714 MoxR-like ATPases [Gen 99.3 8.1E-12 1.8E-16 125.4 12.3 137 194-355 43-201 (329)
142 TIGR02442 Cob-chelat-sub cobal 99.3 2.3E-11 4.9E-16 132.0 16.2 261 158-458 3-313 (633)
143 PRK13531 regulatory ATPase Rav 99.3 2.2E-11 4.7E-16 125.3 14.6 241 158-451 19-285 (498)
144 PRK09087 hypothetical protein; 99.3 1.7E-11 3.8E-16 116.2 11.6 172 195-449 45-222 (226)
145 TIGR00368 Mg chelatase-related 99.3 6.8E-11 1.5E-15 124.0 16.3 239 157-447 190-497 (499)
146 PRK14971 DNA polymerase III su 99.3 4.5E-11 9.9E-16 128.6 15.2 165 157-359 15-195 (614)
147 COG0464 SpoVK ATPases of the A 99.3 7E-11 1.5E-15 125.2 16.4 211 179-451 8-228 (494)
148 KOG1969 DNA replication checkp 99.3 2.1E-10 4.5E-15 120.5 19.0 167 157-355 269-479 (877)
149 cd00009 AAA The AAA+ (ATPases 99.3 5.9E-11 1.3E-15 103.0 11.7 127 194-343 19-151 (151)
150 COG1219 ClpX ATP-dependent pro 99.3 2.4E-11 5.1E-16 116.6 9.7 170 146-326 48-231 (408)
151 COG0542 clpA ATP-binding subun 99.2 9.1E-11 2E-15 126.4 14.9 172 159-361 491-709 (786)
152 TIGR02903 spore_lon_C ATP-depe 99.2 1.5E-10 3.3E-15 124.9 16.5 170 157-359 152-368 (615)
153 PRK09862 putative ATP-dependen 99.2 3.6E-10 7.8E-15 118.2 17.5 218 194-448 210-491 (506)
154 TIGR03346 chaperone_ClpB ATP-d 99.2 2.9E-10 6.4E-15 127.4 17.6 174 157-361 563-780 (852)
155 CHL00095 clpC Clp protease ATP 99.2 2.8E-10 6E-15 127.2 17.2 172 158-361 508-736 (821)
156 TIGR03345 VI_ClpV1 type VI sec 99.2 2.9E-10 6.2E-15 126.8 16.7 168 159-361 566-784 (852)
157 PHA02244 ATPase-like protein 99.2 1.2E-10 2.5E-15 116.1 12.0 125 196-353 121-269 (383)
158 TIGR02031 BchD-ChlD magnesium 99.2 5.1E-10 1.1E-14 120.2 16.8 228 195-458 17-267 (589)
159 PRK07471 DNA polymerase III su 99.2 1.3E-10 2.9E-15 117.6 11.4 169 157-357 17-213 (365)
160 TIGR00764 lon_rel lon-related 99.2 2.1E-09 4.5E-14 115.8 20.1 50 156-221 15-64 (608)
161 COG1224 TIP49 DNA helicase TIP 99.1 2.7E-09 5.9E-14 104.0 17.8 93 324-453 342-436 (450)
162 TIGR03015 pepcterm_ATPase puta 99.1 1.4E-09 2.9E-14 105.9 16.1 199 195-449 44-266 (269)
163 PRK10865 protein disaggregatio 99.1 4.6E-10 9.9E-15 125.5 14.3 174 157-361 566-783 (857)
164 PRK05564 DNA polymerase III su 99.1 7.2E-10 1.6E-14 110.6 13.7 163 157-357 2-165 (313)
165 COG1220 HslU ATP-dependent pro 99.1 3.6E-09 7.8E-14 102.5 17.7 86 267-355 250-347 (444)
166 PRK09112 DNA polymerase III su 99.1 1.4E-09 3.1E-14 109.5 15.8 167 157-355 21-211 (351)
167 PRK07399 DNA polymerase III su 99.1 1.1E-09 2.4E-14 108.8 14.5 168 157-357 2-195 (314)
168 PRK08058 DNA polymerase III su 99.1 4.7E-10 1E-14 112.5 11.4 167 157-355 3-180 (329)
169 TIGR00678 holB DNA polymerase 99.1 1E-09 2.2E-14 101.2 11.9 136 195-356 15-167 (188)
170 KOG0991 Replication factor C, 99.1 1.1E-09 2.4E-14 101.0 11.4 154 157-358 25-183 (333)
171 PF07724 AAA_2: AAA domain (Cd 99.1 1.7E-10 3.8E-15 104.6 5.8 120 195-326 4-132 (171)
172 COG2607 Predicted ATPase (AAA+ 99.1 9E-09 1.9E-13 95.6 17.0 160 158-360 59-242 (287)
173 PRK04132 replication factor C 99.1 1.5E-09 3.2E-14 119.3 13.8 136 196-359 566-704 (846)
174 PRK11331 5-methylcytosine-spec 99.0 1E-09 2.2E-14 112.2 11.3 164 158-343 174-357 (459)
175 PTZ00111 DNA replication licen 99.0 8.3E-09 1.8E-13 113.1 18.5 235 194-451 492-806 (915)
176 smart00382 AAA ATPases associa 99.0 7.1E-10 1.5E-14 95.2 8.2 131 194-344 2-147 (148)
177 PF07728 AAA_5: AAA domain (dy 99.0 5.3E-11 1.2E-15 104.1 1.1 110 196-335 1-139 (139)
178 COG1239 ChlI Mg-chelatase subu 99.0 4E-09 8.7E-14 105.7 14.2 259 156-456 14-329 (423)
179 PRK05707 DNA polymerase III su 99.0 1.4E-09 2.9E-14 108.8 11.0 143 195-356 23-177 (328)
180 PRK08116 hypothetical protein; 99.0 2.3E-09 5.1E-14 104.3 11.0 138 194-359 114-262 (268)
181 COG0606 Predicted ATPase with 99.0 7.5E-10 1.6E-14 112.3 7.7 240 157-448 177-484 (490)
182 KOG2035 Replication factor C, 99.0 3E-08 6.5E-13 93.9 17.6 228 158-457 12-266 (351)
183 PF01078 Mg_chelatase: Magnesi 99.0 1.8E-10 3.8E-15 106.2 2.7 156 158-347 2-205 (206)
184 KOG0745 Putative ATP-dependent 99.0 2.6E-09 5.5E-14 106.5 10.8 139 195-344 227-386 (564)
185 COG0542 clpA ATP-binding subun 99.0 9.7E-09 2.1E-13 111.0 16.0 176 155-360 166-349 (786)
186 COG0470 HolB ATPase involved i 99.0 4.9E-09 1.1E-13 104.6 12.9 138 196-354 26-178 (325)
187 PF13177 DNA_pol3_delta2: DNA 98.9 6.5E-09 1.4E-13 93.6 9.9 147 163-344 1-161 (162)
188 PRK06964 DNA polymerase III su 98.9 5.7E-09 1.2E-13 104.4 9.4 72 266-355 131-202 (342)
189 smart00763 AAA_PrkA PrkA AAA d 98.9 1.1E-08 2.3E-13 102.1 11.3 55 158-220 49-104 (361)
190 KOG1514 Origin recognition com 98.9 4.3E-08 9.4E-13 103.1 15.6 153 194-360 422-592 (767)
191 COG1126 GlnQ ABC-type polar am 98.9 4.5E-09 9.8E-14 96.4 6.7 118 185-324 20-197 (240)
192 PF07726 AAA_3: ATPase family 98.8 4.1E-09 8.9E-14 89.6 5.7 108 196-335 1-129 (131)
193 PF05621 TniB: Bacterial TniB 98.8 1.5E-07 3.2E-12 91.6 16.9 205 195-444 62-284 (302)
194 PRK06871 DNA polymerase III su 98.8 3E-08 6.6E-13 98.6 12.1 143 195-356 25-178 (325)
195 TIGR00602 rad24 checkpoint pro 98.8 1.1E-07 2.3E-12 102.3 16.8 180 157-360 82-290 (637)
196 COG1116 TauB ABC-type nitrate/ 98.8 2.7E-08 5.9E-13 93.6 10.5 31 189-219 24-54 (248)
197 COG1120 FepC ABC-type cobalami 98.8 2.3E-09 5.1E-14 102.3 3.1 64 296-359 171-238 (258)
198 PF06068 TIP49: TIP49 C-termin 98.8 2E-07 4.2E-12 92.6 15.7 53 158-219 23-75 (398)
199 PRK07993 DNA polymerase III su 98.8 2.1E-08 4.5E-13 100.5 9.0 142 195-355 25-178 (334)
200 KOG1942 DNA helicase, TBP-inte 98.8 5.9E-07 1.3E-11 85.8 18.1 27 194-220 64-90 (456)
201 PRK08769 DNA polymerase III su 98.8 2.8E-08 6.1E-13 98.6 9.6 142 195-355 27-183 (319)
202 COG3842 PotA ABC-type spermidi 98.7 1.7E-08 3.7E-13 100.6 6.5 45 189-240 26-70 (352)
203 TIGR01817 nifA Nif-specific re 98.7 2.2E-07 4.7E-12 99.5 15.2 166 156-361 193-388 (534)
204 PF00493 MCM: MCM2/3/5 family 98.7 1E-08 2.2E-13 102.9 4.5 262 160-451 25-328 (331)
205 COG1221 PspF Transcriptional r 98.7 7.8E-08 1.7E-12 97.3 10.7 172 156-365 75-272 (403)
206 COG1125 OpuBA ABC-type proline 98.7 5.5E-08 1.2E-12 91.3 8.5 61 189-256 22-82 (309)
207 PRK06090 DNA polymerase III su 98.7 8.6E-08 1.9E-12 95.1 10.2 142 195-355 26-178 (319)
208 COG1241 MCM2 Predicted ATPase 98.7 1E-07 2.2E-12 102.2 11.4 260 158-452 285-595 (682)
209 PRK11608 pspF phage shock prot 98.7 6.8E-08 1.5E-12 96.8 9.6 164 157-360 4-197 (326)
210 KOG0478 DNA replication licens 98.7 9E-08 1.9E-12 100.3 10.1 233 195-453 463-728 (804)
211 cd03222 ABC_RNaseL_inhibitor T 98.7 1.3E-07 2.8E-12 86.2 9.7 111 189-324 20-133 (177)
212 TIGR02974 phageshock_pspF psp 98.7 2E-07 4.4E-12 93.4 11.8 139 195-361 23-191 (329)
213 COG1134 TagH ABC-type polysacc 98.6 1.6E-07 3.5E-12 87.9 10.2 114 189-323 48-207 (249)
214 PRK07952 DNA replication prote 98.6 9.8E-08 2.1E-12 91.3 8.8 72 195-279 100-174 (244)
215 PF05729 NACHT: NACHT domain 98.6 2.6E-07 5.7E-12 82.3 10.8 155 195-359 1-165 (166)
216 PRK12377 putative replication 98.6 8.6E-08 1.9E-12 92.0 8.0 103 195-324 102-206 (248)
217 cd03216 ABC_Carb_Monos_I This 98.6 1.8E-07 3.8E-12 84.3 9.6 112 189-324 21-143 (163)
218 PRK13406 bchD magnesium chelat 98.6 1.4E-07 3E-12 101.0 10.2 210 195-458 26-259 (584)
219 PRK08699 DNA polymerase III su 98.6 9.3E-08 2E-12 95.5 8.1 143 194-355 21-183 (325)
220 PRK08181 transposase; Validate 98.6 7.7E-08 1.7E-12 93.4 7.0 124 194-345 106-243 (269)
221 COG1118 CysA ABC-type sulfate/ 98.6 2.3E-08 4.9E-13 96.3 2.8 44 189-239 23-66 (345)
222 PRK06921 hypothetical protein; 98.6 2.9E-07 6.4E-12 89.5 10.5 113 194-327 117-229 (266)
223 cd03246 ABCC_Protease_Secretio 98.6 1.3E-07 2.7E-12 86.0 7.1 111 189-323 23-156 (173)
224 PF13173 AAA_14: AAA domain 98.6 1.8E-07 4E-12 80.6 7.3 122 194-348 2-126 (128)
225 PF00158 Sigma54_activat: Sigm 98.5 1.3E-07 2.9E-12 85.4 6.3 102 195-324 23-144 (168)
226 PRK06835 DNA replication prote 98.5 2.1E-07 4.6E-12 93.0 8.3 115 195-335 184-305 (329)
227 TIGR02329 propionate_PrpR prop 98.5 1.4E-06 3E-11 92.4 14.4 165 156-360 209-404 (526)
228 PRK09183 transposase/IS protei 98.5 1.6E-07 3.4E-12 91.1 6.5 104 194-324 102-206 (259)
229 PRK05022 anaerobic nitric oxid 98.5 1.1E-06 2.4E-11 93.4 13.5 164 158-361 186-379 (509)
230 PRK08939 primosomal protein Dn 98.5 3.3E-07 7.1E-12 90.8 8.7 26 194-219 156-181 (306)
231 PRK11388 DNA-binding transcrip 98.5 1.9E-06 4E-11 94.4 15.5 165 157-361 323-514 (638)
232 cd01120 RecA-like_NTPases RecA 98.5 7.5E-07 1.6E-11 78.9 10.1 23 197-219 2-24 (165)
233 COG1136 SalX ABC-type antimicr 98.5 2.2E-07 4.8E-12 87.1 6.9 45 189-240 26-70 (226)
234 PF01637 Arch_ATPase: Archaeal 98.5 3.4E-07 7.3E-12 86.3 8.2 82 267-360 118-207 (234)
235 PRK13765 ATP-dependent proteas 98.5 8.6E-06 1.9E-10 88.0 19.8 49 156-220 28-76 (637)
236 COG1121 ZnuC ABC-type Mn/Zn tr 98.5 6.3E-07 1.4E-11 85.4 9.8 31 189-219 25-55 (254)
237 TIGR02688 conserved hypothetic 98.5 6.4E-06 1.4E-10 83.7 17.5 48 405-452 386-436 (449)
238 KOG2227 Pre-initiation complex 98.5 1.9E-06 4.2E-11 87.2 13.6 173 160-360 151-341 (529)
239 PRK15424 propionate catabolism 98.5 2.4E-06 5.2E-11 90.7 15.1 170 157-360 217-419 (538)
240 cd03228 ABCC_MRP_Like The MRP 98.5 2.2E-07 4.8E-12 84.3 6.1 31 189-219 23-53 (171)
241 KOG0990 Replication factor C, 98.5 1.8E-07 3.9E-12 90.5 5.7 165 156-358 38-204 (360)
242 COG2884 FtsE Predicted ATPase 98.5 1.9E-07 4.1E-12 84.1 5.4 45 189-240 23-67 (223)
243 COG3839 MalK ABC-type sugar tr 98.5 4.8E-08 1E-12 96.9 1.7 45 189-240 24-68 (338)
244 cd00267 ABC_ATPase ABC (ATP-bi 98.5 8.3E-07 1.8E-11 79.2 9.2 110 189-323 20-140 (157)
245 PRK06526 transposase; Provisio 98.5 1.9E-07 4.2E-12 90.0 5.3 26 194-219 98-123 (254)
246 cd03214 ABC_Iron-Siderophores_ 98.4 6.7E-07 1.4E-11 81.8 8.5 44 189-239 20-63 (180)
247 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.4 1.3E-06 2.8E-11 77.0 9.9 107 189-323 21-127 (144)
248 PRK15429 formate hydrogenlyase 98.4 3.7E-06 8.1E-11 92.7 15.7 171 157-361 374-568 (686)
249 PF13401 AAA_22: AAA domain; P 98.4 4.9E-07 1.1E-11 77.7 7.0 112 194-323 4-127 (131)
250 cd03230 ABC_DR_subfamily_A Thi 98.4 1.1E-06 2.3E-11 79.9 9.5 31 189-219 21-51 (173)
251 cd03238 ABC_UvrA The excision 98.4 2.5E-06 5.4E-11 77.8 11.6 132 189-343 16-163 (176)
252 PF14532 Sigma54_activ_2: Sigm 98.4 4.7E-07 1E-11 79.2 6.4 109 195-343 22-137 (138)
253 cd03229 ABC_Class3 This class 98.4 1.3E-06 2.7E-11 79.8 9.6 31 189-219 21-51 (178)
254 PRK10820 DNA-binding transcrip 98.4 2.2E-06 4.7E-11 91.3 12.5 166 156-361 201-396 (520)
255 KOG1051 Chaperone HSP104 and r 98.4 5.5E-06 1.2E-10 91.2 15.0 132 158-323 561-710 (898)
256 cd03215 ABC_Carb_Monos_II This 98.4 2.2E-06 4.7E-11 78.6 10.2 31 189-219 21-51 (182)
257 cd03247 ABCC_cytochrome_bd The 98.4 1.9E-06 4.1E-11 78.6 9.7 31 189-219 23-53 (178)
258 cd03283 ABC_MutS-like MutS-lik 98.4 1.6E-06 3.5E-11 80.6 9.0 29 190-218 21-49 (199)
259 COG4619 ABC-type uncharacteriz 98.4 2.3E-06 5E-11 75.8 9.1 44 189-239 24-67 (223)
260 COG1131 CcmA ABC-type multidru 98.4 3.7E-07 8.1E-12 90.1 4.8 44 189-239 26-69 (293)
261 TIGR01618 phage_P_loop phage n 98.4 1.3E-06 2.9E-11 82.1 8.1 119 194-323 12-143 (220)
262 COG1122 CbiO ABC-type cobalt t 98.3 1.1E-07 2.3E-12 90.5 0.7 31 189-219 25-55 (235)
263 COG0410 LivF ABC-type branched 98.3 1.4E-06 3E-11 81.1 7.5 49 185-241 21-69 (237)
264 KOG1970 Checkpoint RAD17-RFC c 98.3 5.2E-05 1.1E-09 78.4 19.3 29 194-222 110-138 (634)
265 PRK13537 nodulation ABC transp 98.3 1.2E-06 2.7E-11 87.0 7.4 31 189-219 28-58 (306)
266 PF01695 IstB_IS21: IstB-like 98.3 4.2E-07 9.1E-12 83.1 3.8 103 194-324 47-150 (178)
267 COG3267 ExeA Type II secretory 98.3 1.9E-05 4.1E-10 74.6 14.7 195 195-441 52-265 (269)
268 PRK05917 DNA polymerase III su 98.3 3.1E-06 6.8E-11 82.6 10.0 126 195-344 20-154 (290)
269 COG1124 DppF ABC-type dipeptid 98.3 1.1E-06 2.3E-11 82.4 6.3 42 189-237 28-69 (252)
270 COG1484 DnaC DNA replication p 98.3 2.3E-06 5E-11 82.7 8.7 103 194-325 105-210 (254)
271 COG0396 sufC Cysteine desulfur 98.3 6.1E-06 1.3E-10 76.7 10.9 52 184-241 21-72 (251)
272 PRK13536 nodulation factor exp 98.3 1.5E-06 3.2E-11 87.6 7.5 31 189-219 62-92 (340)
273 KOG0477 DNA replication licens 98.3 2.9E-06 6.2E-11 88.3 9.5 237 195-450 483-758 (854)
274 PRK05818 DNA polymerase III su 98.3 3E-06 6.6E-11 81.1 8.8 133 194-344 7-147 (261)
275 KOG0480 DNA replication licens 98.3 4.3E-06 9.3E-11 87.4 10.5 265 156-452 342-646 (764)
276 TIGR03265 PhnT2 putative 2-ami 98.3 1.6E-06 3.5E-11 87.8 7.4 42 189-237 25-66 (353)
277 KOG2680 DNA helicase TIP49, TB 98.3 1.2E-05 2.6E-10 77.2 12.6 95 324-455 339-435 (454)
278 PRK13647 cbiO cobalt transport 98.3 5.4E-07 1.2E-11 88.1 3.7 30 189-218 26-55 (274)
279 PRK11650 ugpC glycerol-3-phosp 98.3 1.6E-06 3.5E-11 87.9 7.1 43 189-238 25-67 (356)
280 TIGR01166 cbiO cobalt transpor 98.3 1E-06 2.2E-11 81.3 5.1 31 189-219 13-43 (190)
281 cd03223 ABCD_peroxisomal_ALDP 98.3 4.6E-06 1E-10 75.3 9.2 31 189-219 22-52 (166)
282 cd03226 ABC_cobalt_CbiO_domain 98.3 5.4E-06 1.2E-10 77.4 9.9 31 189-219 21-51 (205)
283 cd01128 rho_factor Transcripti 98.3 6.9E-06 1.5E-10 79.0 10.8 129 190-323 12-166 (249)
284 PRK11432 fbpC ferric transport 98.3 1.9E-06 4.1E-11 87.2 7.3 31 189-219 27-57 (351)
285 TIGR00960 3a0501s02 Type II (G 98.2 9.9E-07 2.1E-11 83.0 4.8 31 189-219 24-54 (216)
286 COG4608 AppF ABC-type oligopep 98.2 4.1E-06 8.9E-11 80.0 8.9 112 189-324 34-171 (268)
287 cd03268 ABC_BcrA_bacitracin_re 98.2 1.9E-06 4.1E-11 80.6 6.6 30 189-218 21-50 (208)
288 TIGR01186 proV glycine betaine 98.2 3.3E-07 7.1E-12 92.9 1.4 43 189-238 14-56 (363)
289 PRK09536 btuD corrinoid ABC tr 98.2 9.5E-07 2.1E-11 90.7 4.8 31 189-219 24-54 (402)
290 cd03243 ABC_MutS_homologs The 98.2 8E-06 1.7E-10 76.1 10.5 29 189-217 24-52 (202)
291 PRK09452 potA putrescine/sperm 98.2 2.2E-06 4.7E-11 87.5 7.0 31 189-219 35-65 (375)
292 PRK10923 glnG nitrogen regulat 98.2 1.5E-05 3.2E-10 84.0 13.6 139 195-361 162-330 (469)
293 TIGR01188 drrA daunorubicin re 98.2 5E-06 1.1E-10 82.5 9.5 30 189-218 14-43 (302)
294 TIGR03258 PhnT 2-aminoethylpho 98.2 2.4E-06 5.3E-11 86.7 7.4 30 189-218 26-55 (362)
295 PRK13635 cbiO cobalt transport 98.2 1.2E-06 2.5E-11 86.1 4.7 31 189-219 28-58 (279)
296 cd03217 ABC_FeS_Assembly ABC-t 98.2 6.4E-06 1.4E-10 76.7 9.5 30 189-218 21-50 (200)
297 PRK13650 cbiO cobalt transport 98.2 1.3E-06 2.8E-11 85.8 5.0 30 189-218 28-57 (279)
298 COG1127 Ttg2A ABC-type transpo 98.2 5.6E-06 1.2E-10 77.5 8.7 44 189-239 29-72 (263)
299 COG3638 ABC-type phosphate/pho 98.2 6.9E-06 1.5E-10 76.7 9.2 162 189-358 25-245 (258)
300 COG4586 ABC-type uncharacteriz 98.2 6E-06 1.3E-10 78.5 8.9 45 189-240 45-89 (325)
301 PRK13546 teichoic acids export 98.2 9.7E-06 2.1E-10 78.9 10.8 31 189-219 45-75 (264)
302 KOG0482 DNA replication licens 98.2 1.6E-06 3.6E-11 88.1 5.5 263 160-451 343-640 (721)
303 PRK13648 cbiO cobalt transport 98.2 7E-07 1.5E-11 87.1 2.7 31 189-219 30-60 (269)
304 COG4525 TauB ABC-type taurine 98.2 9.3E-06 2E-10 73.7 9.6 31 189-219 26-56 (259)
305 cd03280 ABC_MutS2 MutS2 homolo 98.2 9.9E-06 2.1E-10 75.4 10.3 27 189-215 22-49 (200)
306 COG2204 AtoC Response regulato 98.2 4.8E-06 1E-10 85.9 8.8 165 157-362 139-334 (464)
307 COG1117 PstB ABC-type phosphat 98.2 8.1E-06 1.8E-10 75.1 9.3 66 189-256 28-95 (253)
308 cd03263 ABC_subfamily_A The AB 98.2 2E-06 4.2E-11 81.2 5.3 31 189-219 23-53 (220)
309 TIGR02673 FtsE cell division A 98.2 6.9E-06 1.5E-10 77.1 9.0 31 189-219 23-53 (214)
310 cd03258 ABC_MetN_methionine_tr 98.2 3E-06 6.5E-11 80.7 6.5 31 189-219 26-56 (233)
311 PRK09376 rho transcription ter 98.2 1.4E-05 3E-10 80.7 11.3 125 191-320 166-316 (416)
312 cd03266 ABC_NatA_sodium_export 98.2 7.7E-06 1.7E-10 77.0 9.2 30 189-218 26-55 (218)
313 cd03225 ABC_cobalt_CbiO_domain 98.2 2E-06 4.4E-11 80.5 5.0 31 189-219 22-52 (211)
314 cd03281 ABC_MSH5_euk MutS5 hom 98.2 9.7E-06 2.1E-10 76.3 9.6 22 195-216 30-51 (213)
315 cd03265 ABC_DrrA DrrA is the A 98.2 3.6E-06 7.7E-11 79.5 6.6 30 189-218 21-50 (220)
316 cd03292 ABC_FtsE_transporter F 98.2 9.8E-06 2.1E-10 76.0 9.5 30 189-218 22-51 (214)
317 COG4555 NatA ABC-type Na+ tran 98.2 2E-05 4.3E-10 72.0 10.8 44 189-239 23-66 (245)
318 PF03215 Rad17: Rad17 cell cyc 98.2 4.6E-05 1E-09 80.6 15.4 56 158-222 18-73 (519)
319 PRK13540 cytochrome c biogenes 98.2 1.2E-05 2.6E-10 74.8 9.9 31 189-219 22-52 (200)
320 TIGR01288 nodI ATP-binding ABC 98.2 4.6E-06 1E-10 82.8 7.5 30 189-218 25-54 (303)
321 cd03259 ABC_Carb_Solutes_like 98.1 9.4E-06 2E-10 76.2 9.1 30 189-218 21-50 (213)
322 TIGR03608 L_ocin_972_ABC putat 98.1 1.5E-05 3.3E-10 74.2 10.5 31 189-219 19-49 (206)
323 cd03293 ABC_NrtD_SsuB_transpor 98.1 1.1E-05 2.4E-10 76.1 9.6 30 189-218 25-54 (220)
324 PRK13643 cbiO cobalt transport 98.1 9.1E-07 2E-11 87.2 2.2 31 189-219 27-57 (288)
325 COG3829 RocR Transcriptional r 98.1 8E-06 1.7E-10 84.6 9.0 164 155-360 241-437 (560)
326 PRK11000 maltose/maltodextrin 98.1 4E-06 8.7E-11 85.5 6.8 31 189-219 24-54 (369)
327 cd03218 ABC_YhbG The ABC trans 98.1 1.1E-05 2.5E-10 76.6 9.5 31 189-219 21-51 (232)
328 cd03231 ABC_CcmA_heme_exporter 98.1 1.2E-05 2.5E-10 75.0 9.4 30 189-218 21-50 (201)
329 cd03232 ABC_PDR_domain2 The pl 98.1 5.3E-06 1.1E-10 76.7 6.9 30 189-218 28-57 (192)
330 PF12775 AAA_7: P-loop contain 98.1 2.5E-06 5.3E-11 83.3 4.9 142 194-362 33-198 (272)
331 PRK10908 cell division protein 98.1 2.2E-06 4.7E-11 81.1 4.3 30 189-218 23-52 (222)
332 PLN03210 Resistant to P. syrin 98.1 4.2E-05 9.1E-10 89.2 15.7 29 194-222 207-235 (1153)
333 PRK11607 potG putrescine trans 98.1 5E-06 1.1E-10 84.9 7.1 31 189-219 40-70 (377)
334 PRK13548 hmuV hemin importer A 98.1 4.1E-06 9E-11 81.2 6.1 31 189-219 23-53 (258)
335 PRK10851 sulfate/thiosulfate t 98.1 5.5E-06 1.2E-10 83.9 7.2 31 189-219 23-53 (353)
336 PRK13543 cytochrome c biogenes 98.1 1.4E-05 3E-10 75.2 9.5 31 189-219 32-62 (214)
337 TIGR03864 PQQ_ABC_ATP ABC tran 98.1 1.4E-05 2.9E-10 76.4 9.4 30 189-218 22-51 (236)
338 PRK09544 znuC high-affinity zi 98.1 1.5E-05 3.2E-10 77.0 9.7 31 189-219 25-55 (251)
339 PF12774 AAA_6: Hydrolytic ATP 98.1 2E-05 4.3E-10 75.0 10.3 130 194-353 32-176 (231)
340 PRK13640 cbiO cobalt transport 98.1 2.8E-06 6.1E-11 83.4 4.8 31 189-219 28-58 (282)
341 PRK11231 fecE iron-dicitrate t 98.1 3.4E-06 7.4E-11 81.5 5.2 31 189-219 23-53 (255)
342 PRK13539 cytochrome c biogenes 98.1 1.1E-05 2.3E-10 75.6 8.4 31 189-219 23-53 (207)
343 PF00910 RNA_helicase: RNA hel 98.1 4.8E-06 1E-10 69.5 5.4 26 197-222 1-26 (107)
344 cd03264 ABC_drug_resistance_li 98.1 6.5E-06 1.4E-10 77.2 6.9 30 189-219 21-50 (211)
345 cd03233 ABC_PDR_domain1 The pl 98.1 1.7E-05 3.8E-10 73.9 9.7 31 189-219 28-58 (202)
346 TIGR03771 anch_rpt_ABC anchore 98.1 1.4E-05 3E-10 75.7 9.2 30 190-219 2-31 (223)
347 PRK13638 cbiO cobalt transport 98.1 3.1E-06 6.7E-11 82.7 4.6 31 189-219 22-52 (271)
348 PRK13541 cytochrome c biogenes 98.1 1.6E-05 3.5E-10 73.6 9.1 31 189-219 21-51 (195)
349 cd03213 ABCG_EPDR ABCG transpo 98.1 3.8E-06 8.3E-11 77.8 4.9 30 189-218 30-59 (194)
350 PRK13633 cobalt transporter AT 98.1 2.4E-06 5.2E-11 83.9 3.6 31 189-219 31-61 (280)
351 PRK13652 cbiO cobalt transport 98.1 3.1E-06 6.6E-11 83.0 4.3 31 189-219 25-55 (277)
352 TIGR03873 F420-0_ABC_ATP propo 98.1 5.7E-06 1.2E-10 80.0 6.1 31 189-219 22-52 (256)
353 TIGR02237 recomb_radB DNA repa 98.1 1.8E-05 4E-10 73.9 9.4 120 193-323 11-149 (209)
354 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.1 5.4E-06 1.2E-10 79.2 5.8 30 189-218 24-53 (238)
355 TIGR02915 PEP_resp_reg putativ 98.1 1.5E-05 3.2E-10 83.4 9.6 138 195-360 163-330 (445)
356 cd03294 ABC_Pro_Gly_Bertaine T 98.1 2.3E-05 5.1E-10 76.4 10.4 31 189-219 45-75 (269)
357 PRK07132 DNA polymerase III su 98.1 3.6E-05 7.9E-10 75.9 11.7 135 195-355 19-160 (299)
358 TIGR01818 ntrC nitrogen regula 98.1 6.4E-05 1.4E-09 79.0 14.4 139 195-361 158-326 (463)
359 TIGR03522 GldA_ABC_ATP gliding 98.1 1.8E-05 4E-10 78.4 9.7 30 189-218 23-52 (301)
360 COG1618 Predicted nucleotide k 98.1 6.6E-05 1.4E-09 66.2 11.7 27 195-221 6-32 (179)
361 PRK11247 ssuB aliphatic sulfon 98.1 2.1E-05 4.5E-10 76.2 9.7 31 189-219 33-63 (257)
362 COG0411 LivG ABC-type branched 98.0 3.5E-06 7.6E-11 79.0 4.0 44 189-239 25-68 (250)
363 PRK13538 cytochrome c biogenes 98.0 1.2E-05 2.7E-10 75.0 7.7 31 189-219 22-52 (204)
364 cd03269 ABC_putative_ATPase Th 98.0 1.6E-05 3.4E-10 74.5 8.5 30 189-218 21-50 (210)
365 PRK13644 cbiO cobalt transport 98.0 4.1E-06 8.9E-11 82.0 4.5 31 189-219 23-53 (274)
366 cd03282 ABC_MSH4_euk MutS4 hom 98.0 3E-05 6.5E-10 72.4 10.0 27 192-218 27-53 (204)
367 PF03969 AFG1_ATPase: AFG1-lik 98.0 2.2E-05 4.8E-10 79.5 9.6 29 192-220 60-88 (362)
368 PRK13651 cobalt transporter AT 98.0 3.3E-06 7.2E-11 83.9 3.6 31 189-219 28-58 (305)
369 PRK15439 autoinducer 2 ABC tra 98.0 1.5E-05 3.2E-10 85.0 8.7 30 189-218 32-61 (510)
370 COG4175 ProV ABC-type proline/ 98.0 7.9E-06 1.7E-10 79.2 5.9 45 189-240 49-93 (386)
371 PRK11176 lipid transporter ATP 98.0 9.6E-06 2.1E-10 87.8 7.3 43 189-238 364-406 (582)
372 cd03256 ABC_PhnC_transporter A 98.0 4.4E-06 9.5E-11 79.9 4.1 30 189-218 22-51 (241)
373 PRK10253 iron-enterobactin tra 98.0 7.1E-06 1.5E-10 79.8 5.6 31 189-219 28-58 (265)
374 TIGR03410 urea_trans_UrtE urea 98.0 1.1E-05 2.3E-10 76.8 6.7 31 189-219 21-51 (230)
375 COG1101 PhnK ABC-type uncharac 98.0 5.7E-06 1.2E-10 76.2 4.5 62 189-257 27-88 (263)
376 PRK13646 cbiO cobalt transport 98.0 5.4E-06 1.2E-10 81.6 4.8 43 189-238 28-70 (286)
377 PRK13636 cbiO cobalt transport 98.0 2.4E-06 5.2E-11 84.0 2.1 31 189-219 27-57 (283)
378 PRK13642 cbiO cobalt transport 98.0 4.9E-06 1.1E-10 81.5 4.3 31 189-219 28-58 (277)
379 cd03237 ABC_RNaseL_inhibitor_d 98.0 1.4E-05 3.1E-10 76.9 7.4 33 187-219 18-50 (246)
380 TIGR02142 modC_ABC molybdenum 98.0 3.8E-06 8.3E-11 85.2 3.6 31 189-219 18-48 (354)
381 cd03224 ABC_TM1139_LivF_branch 98.0 2.7E-05 5.9E-10 73.4 9.2 31 189-219 21-51 (222)
382 TIGR00968 3a0106s01 sulfate AB 98.0 2.9E-05 6.2E-10 74.3 9.3 31 189-219 21-51 (237)
383 COG4618 ArpD ABC-type protease 98.0 3.9E-06 8.4E-11 86.0 3.4 84 150-240 291-401 (580)
384 cd03267 ABC_NatA_like Similar 98.0 3.1E-05 6.7E-10 74.0 9.5 31 189-219 42-72 (236)
385 TIGR01189 ccmA heme ABC export 98.0 2.3E-05 4.9E-10 72.8 8.3 30 189-218 21-50 (198)
386 PRK11144 modC molybdate transp 98.0 6.4E-06 1.4E-10 83.5 4.9 31 189-219 19-49 (352)
387 PRK13545 tagH teichoic acids e 98.0 1.2E-05 2.7E-10 84.4 7.1 31 189-219 45-75 (549)
388 PRK11153 metN DL-methionine tr 98.0 2.6E-05 5.7E-10 78.8 9.3 31 189-219 26-56 (343)
389 KOG2228 Origin recognition com 98.0 0.00021 4.6E-09 70.0 14.9 169 161-357 26-219 (408)
390 TIGR02314 ABC_MetN D-methionin 98.0 1.9E-05 4E-10 79.7 8.1 43 189-238 26-68 (343)
391 PRK13639 cbiO cobalt transport 98.0 7.1E-06 1.5E-10 80.3 4.9 31 189-219 23-53 (275)
392 TIGR03740 galliderm_ABC gallid 98.0 2.3E-05 4.9E-10 74.2 8.2 31 189-219 21-51 (223)
393 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.0 2.9E-05 6.4E-10 73.6 9.0 30 189-218 43-72 (224)
394 PRK13634 cbiO cobalt transport 98.0 6E-06 1.3E-10 81.5 4.3 30 189-218 28-57 (290)
395 cd03235 ABC_Metallic_Cations A 98.0 1.7E-05 3.6E-10 74.5 7.1 31 189-219 20-50 (213)
396 PRK03695 vitamin B12-transport 98.0 9.5E-06 2.1E-10 78.2 5.6 30 189-218 17-46 (248)
397 cd03244 ABCC_MRP_domain2 Domai 98.0 4.2E-05 9E-10 72.2 9.9 30 189-218 25-54 (221)
398 PRK07276 DNA polymerase III su 98.0 5.4E-05 1.2E-09 74.2 10.8 136 195-353 25-171 (290)
399 PRK13632 cbiO cobalt transport 98.0 5.6E-06 1.2E-10 80.8 4.0 31 189-219 30-60 (271)
400 PRK11614 livF leucine/isoleuci 98.0 5E-06 1.1E-10 79.4 3.5 30 189-218 26-55 (237)
401 PRK11361 acetoacetate metaboli 98.0 0.00011 2.4E-09 77.0 13.9 138 195-361 167-335 (457)
402 PRK10938 putative molybdenum t 98.0 1.2E-05 2.7E-10 85.2 6.7 31 189-219 24-54 (490)
403 cd03262 ABC_HisP_GlnQ_permease 98.0 1.9E-05 4.2E-10 74.0 7.3 31 189-219 21-51 (213)
404 COG4615 PvdE ABC-type sideroph 98.0 4.7E-05 1E-09 75.9 10.0 61 189-256 344-404 (546)
405 PRK13631 cbiO cobalt transport 98.0 5.3E-06 1.2E-10 82.9 3.5 31 189-219 47-77 (320)
406 cd01123 Rad51_DMC1_radA Rad51_ 97.9 5E-05 1.1E-09 72.3 10.0 128 193-323 18-169 (235)
407 PRK15115 response regulator Gl 97.9 0.00013 2.9E-09 76.2 14.2 139 195-361 158-326 (444)
408 PRK06067 flagellar accessory p 97.9 7.2E-05 1.6E-09 71.3 11.0 25 194-218 25-49 (234)
409 PRK10575 iron-hydroxamate tran 97.9 7E-06 1.5E-10 79.9 3.8 31 189-219 32-62 (265)
410 COG1137 YhbG ABC-type (unclass 97.9 2.9E-06 6.3E-11 77.2 1.0 153 189-348 25-227 (243)
411 cd03287 ABC_MSH3_euk MutS3 hom 97.9 5.1E-05 1.1E-09 71.8 9.3 25 192-216 29-53 (222)
412 COG2274 SunT ABC-type bacterio 97.9 2.1E-05 4.5E-10 86.1 7.5 44 189-239 494-537 (709)
413 COG4133 CcmA ABC-type transpor 97.9 5.8E-05 1.3E-09 68.2 9.0 42 189-237 23-64 (209)
414 cd03248 ABCC_TAP TAP, the Tran 97.9 1E-05 2.3E-10 76.6 4.5 30 189-218 35-64 (226)
415 PRK07261 topology modulation p 97.9 6.2E-05 1.3E-09 68.3 9.2 27 196-222 2-28 (171)
416 PRK10762 D-ribose transporter 97.9 4E-05 8.6E-10 81.5 9.2 31 189-219 25-55 (501)
417 TIGR03415 ABC_choXWV_ATP choli 97.9 1.6E-05 3.4E-10 81.2 5.8 31 189-219 45-75 (382)
418 PRK10982 galactose/methyl gala 97.9 3.6E-05 7.8E-10 81.7 8.7 31 189-219 19-49 (491)
419 TIGR03796 NHPM_micro_ABC1 NHPM 97.9 1.6E-05 3.4E-10 88.2 6.1 44 189-239 500-543 (710)
420 smart00534 MUTSac ATPase domai 97.9 8.1E-05 1.8E-09 68.4 9.8 20 197-216 2-21 (185)
421 COG1135 AbcC ABC-type metal io 97.9 1.2E-05 2.6E-10 77.9 4.2 45 189-240 27-71 (339)
422 PRK11124 artP arginine transpo 97.9 3.6E-05 7.8E-10 73.7 7.6 30 189-218 23-52 (242)
423 TIGR02203 MsbA_lipidA lipid A 97.9 2.4E-05 5.1E-10 84.6 7.0 43 189-238 353-395 (571)
424 TIGR02204 MsbA_rel ABC transpo 97.9 2.9E-05 6.2E-10 84.0 7.6 42 189-237 361-402 (576)
425 PRK11288 araG L-arabinose tran 97.9 4.5E-05 9.8E-10 81.1 8.8 30 189-218 274-303 (501)
426 cd01124 KaiC KaiC is a circadi 97.9 0.00011 2.5E-09 67.0 10.4 22 197-218 2-23 (187)
427 PRK09361 radB DNA repair and r 97.9 7.2E-05 1.6E-09 70.8 9.2 39 193-237 22-60 (225)
428 PRK04296 thymidine kinase; Pro 97.8 7.4E-05 1.6E-09 69.0 8.9 25 194-218 2-26 (190)
429 TIGR03797 NHPM_micro_ABC2 NHPM 97.8 2E-05 4.3E-10 87.1 5.9 44 189-239 474-517 (686)
430 COG3840 ThiQ ABC-type thiamine 97.8 6.5E-05 1.4E-09 67.6 7.9 44 190-240 21-64 (231)
431 TIGR02012 tigrfam_recA protein 97.8 8.5E-05 1.8E-09 73.8 9.7 125 194-325 55-193 (321)
432 TIGR03375 type_I_sec_LssB type 97.8 1.8E-05 4E-10 87.5 5.4 43 189-238 486-528 (694)
433 PRK15455 PrkA family serine pr 97.8 2.2E-05 4.7E-10 82.6 5.5 55 157-219 74-128 (644)
434 PRK09473 oppD oligopeptide tra 97.8 5.1E-06 1.1E-10 83.4 0.9 47 189-239 37-83 (330)
435 PRK11174 cysteine/glutathione 97.8 2.3E-05 5E-10 85.0 6.0 30 189-218 371-400 (588)
436 cd03369 ABCC_NFT1 Domain 2 of 97.8 3E-05 6.6E-10 72.4 6.0 30 189-218 29-58 (207)
437 TIGR00767 rho transcription te 97.8 8.4E-05 1.8E-09 75.4 9.4 91 189-283 163-271 (415)
438 PRK11022 dppD dipeptide transp 97.8 5.8E-05 1.3E-09 75.7 8.2 31 189-219 28-58 (326)
439 PRK13549 xylose transporter AT 97.8 5.6E-05 1.2E-09 80.5 8.4 31 189-219 26-56 (506)
440 COG1123 ATPase components of v 97.8 6E-06 1.3E-10 86.4 0.9 43 189-238 312-354 (539)
441 PF13207 AAA_17: AAA domain; P 97.8 2.1E-05 4.5E-10 66.6 4.0 27 196-222 1-27 (121)
442 PRK10789 putative multidrug tr 97.8 4E-05 8.7E-10 82.8 7.1 31 189-219 336-366 (569)
443 COG4167 SapF ABC-type antimicr 97.8 6.6E-05 1.4E-09 67.5 7.1 44 189-239 34-77 (267)
444 COG4559 ABC-type hemin transpo 97.8 7.1E-05 1.5E-09 68.9 7.4 44 189-239 22-65 (259)
445 PRK13549 xylose transporter AT 97.8 5.5E-05 1.2E-09 80.5 7.9 31 189-219 283-313 (506)
446 COG4152 ABC-type uncharacteriz 97.8 0.00011 2.4E-09 69.0 8.8 44 189-239 23-66 (300)
447 TIGR00958 3a01208 Conjugate Tr 97.8 3.4E-05 7.3E-10 85.6 6.5 43 189-238 502-544 (711)
448 COG1119 ModF ABC-type molybden 97.8 7.2E-05 1.6E-09 70.4 7.6 30 189-218 52-81 (257)
449 TIGR01193 bacteriocin_ABC ABC- 97.8 3.2E-05 6.9E-10 85.8 6.3 43 189-238 495-537 (708)
450 TIGR01842 type_I_sec_PrtD type 97.8 3.6E-05 7.8E-10 82.7 6.5 31 189-219 339-369 (544)
451 PRK13657 cyclic beta-1,2-gluca 97.8 4.6E-05 9.9E-10 82.7 7.3 43 189-238 356-398 (588)
452 COG4181 Predicted ABC-type tra 97.8 0.00019 4.2E-09 63.9 9.7 33 185-218 28-60 (228)
453 PRK10762 D-ribose transporter 97.8 6.4E-05 1.4E-09 80.0 8.1 30 189-218 273-302 (501)
454 COG1129 MglA ABC-type sugar tr 97.8 7.5E-05 1.6E-09 77.7 8.3 149 189-358 29-244 (500)
455 PRK08533 flagellar accessory p 97.8 0.00016 3.4E-09 68.9 9.8 24 193-216 23-46 (230)
456 TIGR01846 type_I_sec_HlyB type 97.8 5.6E-05 1.2E-09 83.6 7.7 44 189-239 478-521 (694)
457 PRK10982 galactose/methyl gala 97.8 5.5E-05 1.2E-09 80.2 7.4 30 189-218 269-298 (491)
458 KOG0058 Peptide exporter, ABC 97.8 0.00011 2.4E-09 78.6 9.4 44 189-239 489-532 (716)
459 COG4604 CeuD ABC-type enteroch 97.7 0.00034 7.3E-09 63.9 11.0 163 189-358 22-234 (252)
460 PRK10790 putative multidrug tr 97.7 5.3E-05 1.1E-09 82.3 7.2 44 189-239 362-405 (592)
461 TIGR02857 CydD thiol reductant 97.7 6.3E-05 1.4E-09 80.6 7.6 43 189-238 343-385 (529)
462 cd01394 radB RadB. The archaea 97.7 0.00016 3.5E-09 68.0 9.5 27 193-219 18-44 (218)
463 COG5271 MDN1 AAA ATPase contai 97.7 7.1E-05 1.5E-09 85.2 7.9 137 194-358 1543-1704(4600)
464 COG3604 FhlA Transcriptional r 97.7 6.1E-05 1.3E-09 77.3 6.9 129 157-324 221-368 (550)
465 COG4138 BtuD ABC-type cobalami 97.7 0.00037 7.9E-09 62.4 10.9 159 191-359 22-231 (248)
466 TIGR01192 chvA glucan exporter 97.7 6.5E-05 1.4E-09 81.4 7.7 31 189-219 356-386 (585)
467 TIGR02868 CydC thiol reductant 97.7 4.7E-05 1E-09 81.5 6.5 44 189-239 356-399 (529)
468 TIGR02858 spore_III_AA stage I 97.7 7.6E-05 1.6E-09 72.6 7.3 25 195-219 112-136 (270)
469 PRK08118 topology modulation p 97.7 4.7E-05 1E-09 68.8 5.5 27 196-222 3-29 (167)
470 cd00983 recA RecA is a bacter 97.7 0.00013 2.9E-09 72.5 9.1 123 194-325 55-193 (325)
471 PRK15177 Vi polysaccharide exp 97.7 8.3E-05 1.8E-09 69.9 7.3 31 189-219 8-38 (213)
472 COG4148 ModC ABC-type molybdat 97.7 1.7E-05 3.6E-10 75.8 2.5 123 194-323 24-189 (352)
473 cd03284 ABC_MutS1 MutS1 homolo 97.7 0.00018 4E-09 67.8 9.6 22 195-216 31-52 (216)
474 PRK09700 D-allose transporter 97.7 1.4E-05 3.1E-10 85.1 2.3 31 189-219 26-56 (510)
475 PRK13695 putative NTPase; Prov 97.7 0.00023 5E-09 64.6 9.9 22 197-218 3-24 (174)
476 PRK13949 shikimate kinase; Pro 97.7 0.00022 4.8E-09 64.6 9.8 27 196-222 3-29 (169)
477 PLN03211 ABC transporter G-25; 97.7 0.00011 2.4E-09 80.5 9.2 31 189-219 89-119 (659)
478 PRK15064 ABC transporter ATP-b 97.7 0.00014 2.9E-09 78.0 9.7 31 189-219 22-52 (530)
479 PF06309 Torsin: Torsin; Inte 97.7 0.00024 5.3E-09 60.4 9.2 54 158-218 24-77 (127)
480 cd01121 Sms Sms (bacterial rad 97.7 0.00015 3.3E-09 73.8 9.4 77 194-281 82-172 (372)
481 COG4988 CydD ABC-type transpor 97.7 5E-05 1.1E-09 79.5 5.9 44 189-239 342-385 (559)
482 PF00931 NB-ARC: NB-ARC domain 97.7 0.00013 2.7E-09 71.5 8.6 137 194-359 19-172 (287)
483 TIGR01194 cyc_pep_trnsptr cycl 97.7 6.3E-05 1.4E-09 81.1 6.8 44 189-239 363-406 (555)
484 PHA00729 NTP-binding motif con 97.7 2.7E-05 5.8E-10 73.3 3.4 25 196-220 19-43 (226)
485 PRK11288 araG L-arabinose tran 97.7 0.00017 3.6E-09 76.8 9.8 30 189-218 25-54 (501)
486 PF03266 NTPase_1: NTPase; In 97.7 3.1E-05 6.7E-10 70.0 3.7 23 196-218 1-23 (168)
487 PRK11160 cysteine/glutathione 97.7 9.1E-05 2E-09 80.1 7.9 43 189-238 361-403 (574)
488 COG5271 MDN1 AAA ATPase contai 97.7 9.4E-05 2E-09 84.3 7.8 132 197-356 891-1046(4600)
489 PRK10636 putative ABC transpor 97.7 0.00014 3.1E-09 79.6 9.2 31 189-219 22-52 (638)
490 cd03227 ABC_Class2 ABC-type Cl 97.7 0.00019 4.2E-09 64.4 8.5 27 194-220 21-47 (162)
491 COG2874 FlaH Predicted ATPases 97.7 0.00031 6.8E-09 64.8 9.8 122 194-334 28-177 (235)
492 COG4598 HisP ABC-type histidin 97.7 0.0003 6.5E-09 63.2 9.3 130 189-325 27-214 (256)
493 PTZ00265 multidrug resistance 97.7 7.8E-05 1.7E-09 88.4 7.3 32 189-220 1189-1220(1466)
494 TIGR01187 potA spermidine/putr 97.7 6.5E-05 1.4E-09 75.3 5.8 21 199-219 1-21 (325)
495 TIGR01257 rim_protein retinal- 97.7 7.4E-05 1.6E-09 89.9 7.1 43 189-238 1960-2002(2272)
496 KOG0057 Mitochondrial Fe/S clu 97.7 0.00011 2.5E-09 76.1 7.5 43 189-239 373-415 (591)
497 COG3845 ABC-type uncharacteriz 97.7 0.00012 2.5E-09 75.2 7.5 149 189-358 25-239 (501)
498 PRK11823 DNA repair protein Ra 97.6 0.00019 4.2E-09 75.0 9.3 77 194-281 80-170 (446)
499 COG0444 DppD ABC-type dipeptid 97.6 0.00015 3.3E-09 71.0 7.9 154 189-344 26-238 (316)
500 PF07693 KAP_NTPase: KAP famil 97.6 0.0009 1.9E-08 66.8 13.9 83 264-361 169-267 (325)
No 1
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-69 Score=507.55 Aligned_cols=403 Identities=56% Similarity=0.815 Sum_probs=355.9
Q ss_pred CcccCCcceeeEEEEecCC---CccchHHHHHHHHHHHHhcCCccCCCCCCCCCCCchhhhccceEEEeeCCCCcccccc
Q 012655 35 PLLAEDKFLVSVEVCLKLS---STARIDDVRLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRICVSDTDEWVKNHDI 111 (459)
Q Consensus 35 ~~~~~~~~~~~vev~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (459)
|-|..-. .||||||++.+ +++|...++..+++++.+.. .+..+....+.++.|+..+|.++++++.+..+++...
T Consensus 13 ~~L~~s~-~v~vevcqk~~~~~s~a~~~~~~~~l~~~~~~~~-~~~~~~~~~~~d~~~~~~~v~~~c~l~~~~~~kn~qp 90 (423)
T KOG0744|consen 13 PCLFNSL-TVHVEVCQKGSSHVSTARNEDVEIALKAHIDSAL-KETNEVDLYPMDSVFLTINVQSVCILRDQDELKNGQP 90 (423)
T ss_pred chhhhCC-ceEEEEEecCCchhhHHHHHHHHHHHHHHHHHHh-hccCcceeecCCcHHHHhhhceeEEeecchhccCCCc
Confidence 4454444 99999999987 67899999999999998755 3333444567889999999999999998888888888
Q ss_pred cccccccceeEEEecCCCCCCcc----ccCCCCcccccccccCccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 012655 112 LLFWQVKPVVQVFQLSEEGPCEE----LSGDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVN 187 (459)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~lP~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~ 187 (459)
..++-.+...|+|++.+++|... ..+.+.....++|.+|..+|+|+|++|+|+.++|++|..|+.....|++++++
T Consensus 91 ls~~~~k~~lh~f~~~~d~~l~~n~~~~d~~esii~an~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vn 170 (423)
T KOG0744|consen 91 LSTEFDKIDLHLFELETDGPLVSNEDIPDGKESIIAANHWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVN 170 (423)
T ss_pred ccccccceeeEEEecccCCCcccCCCCCcchhhhhhhhheeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCC
Confidence 88888889999999999988432 22445566788999999999999999999999999999999999999999999
Q ss_pred CccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhccc
Q 012655 188 PFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENN 267 (459)
Q Consensus 188 ~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~ 267 (459)
+..|.|+|.+|||||||||||+|||++|+++.++....|.++.++++|+|+++++||+|+++.+.++|+++.+++++...
T Consensus 171 tnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 171 TNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred CceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred chhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHH
Q 012655 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQ 347 (459)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~ 347 (459)
..+|+|||+++++..|.+..++.||+++.|++|++|++||++++.+++++++|+|..+.+|.||++|.|++.|+++|+..
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHH-ccCCChHHHhchHHH
Q 012655 348 ARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEA-CEGLSGRSLRKLPFL 426 (459)
Q Consensus 348 ~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~-~~G~Sgr~L~~L~~~ 426 (459)
.+++|++.|+.+++..|++...+... -+..+....+ + ....+++. +.|+|||.||+||++
T Consensus 331 ai~~IlkscieEL~~~gIi~~~~~s~--~~~~~i~~~~---------~--------~~~~~~~~~~~gLSGRtlrkLP~L 391 (423)
T KOG0744|consen 331 AIYEILKSCIEELISSGIILFHQRST--GVKEFIKYQK---------A--------LRNILIELSTVGLSGRTLRKLPLL 391 (423)
T ss_pred HHHHHHHHHHHHHHhcCeeeeeccch--hhhHHhHhhH---------h--------HHHHHHHHhhcCCccchHhhhhHH
Confidence 99999999999999999986654321 1111111100 0 12222332 699999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 012655 427 AHAALANPNGCDPSKFLLTVIDTARKERSELP 458 (459)
Q Consensus 427 a~a~~~~~~~it~~d~~~Al~~~~~~~~~~~~ 458 (459)
|||.+....++|.++|+.||..+++++.++++
T Consensus 392 aha~y~~~~~v~~~~fl~al~ea~~k~~~e~k 423 (423)
T KOG0744|consen 392 AHAEYFRTFTVDLSNFLLALLEAAKKLLSERK 423 (423)
T ss_pred HHHhccCCCccChHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999998874
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=348.71 Aligned_cols=330 Identities=28% Similarity=0.398 Sum_probs=253.5
Q ss_pred CcccCCcceeeEEEEecCCCccchHHHHHHHHHHHHhcCCccCCCCCCCCCCCchhhhccceEEEeeCCCCccccccccc
Q 012655 35 PLLAEDKFLVSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRICVSDTDEWVKNHDILLF 114 (459)
Q Consensus 35 ~~~~~~~~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (459)
|.||-||++=-|||..|+ +.+|.++++.++++|=.. .+.+..-++....-+.++|......++..
T Consensus 335 ~alRRgRfd~ev~IgiP~-~~~RldIl~~l~k~~~~~-----------~~~~l~~iA~~thGyvGaDL~~l~~ea~~--- 399 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPG-SDGRLDILRVLTKKMNLL-----------SDVDLEDIAVSTHGYVGADLAALCREASL--- 399 (693)
T ss_pred hhhhcCCCcceeeecCCC-chhHHHHHHHHHHhcCCc-----------chhhHHHHHHHccchhHHHHHHHHHHHHH---
Confidence 557779999999999996 999999999998876432 11222333333332223332222111111
Q ss_pred ccccceeEEEecCCCCCCccccCCCCcccccc--cccCccccchhhhhhhhhhhHHHHHHHHHHHHH----HHHhcCCCC
Q 012655 115 WQVKPVVQVFQLSEEGPCEELSGDGQLSSFNE--WILPAKEFDGMWESLIYESGLKQRLLHYAASAL----MFAEKGVNP 188 (459)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~lP~~~~~~~~~~li~~~~~k~~L~~~~~~~~----~~~~~g~~~ 188 (459)
.......+.+ .........+++++ +..|+.. |+++.|.+++|+.|++.+.++. .|.+.|++|
T Consensus 400 ~~~r~~~~~~--------~~A~~~i~psa~Re~~ve~p~v~----W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~p 467 (693)
T KOG0730|consen 400 QATRRTLEIF--------QEALMGIRPSALREILVEMPNVS----WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISP 467 (693)
T ss_pred HHhhhhHHHH--------HHHHhcCCchhhhheeccCCCCC----hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCC
Confidence 0111100011 11112233444444 3356664 9999999999999999988765 566778776
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNL 268 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~ 268 (459)
+++||||||||||||++||++|.+.+..| +.+.+.+++++|+|++++.++++|++++.. +|
T Consensus 468 -----pkGVLlyGPPGC~KT~lAkalAne~~~nF---------lsvkgpEL~sk~vGeSEr~ir~iF~kAR~~-----aP 528 (693)
T KOG0730|consen 468 -----PKGVLLYGPPGCGKTLLAKALANEAGMNF---------LSVKGPELFSKYVGESERAIREVFRKARQV-----AP 528 (693)
T ss_pred -----CceEEEECCCCcchHHHHHHHhhhhcCCe---------eeccCHHHHHHhcCchHHHHHHHHHHHhhc-----CC
Confidence 89999999999999999999999998776 999999999999999999999999999984 89
Q ss_pred hhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCH
Q 012655 269 VFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTL 346 (459)
Q Consensus 269 ~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~ 346 (459)
+|+|+||||++...|.+..+ +-..|++++||++||++...++++||++||+|+.||+|+++ |||..+|+|+|+.
T Consensus 529 ~IiFfDEiDsi~~~R~g~~~----~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 529 CIIFFDEIDALAGSRGGSSS----GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred eEEehhhHHhHhhccCCCcc----chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 99999999999999963222 56789999999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHH
Q 012655 347 QARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFL 426 (459)
Q Consensus 347 ~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~ 426 (459)
+.|.+|++.+++++.... ...|.+||+.|+||||++|..+|..
T Consensus 605 ~aR~~Ilk~~~kkmp~~~-------------------------------------~vdl~~La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 605 EARLEILKQCAKKMPFSE-------------------------------------DVDLEELAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred HHHHHHHHHHHhcCCCCc-------------------------------------cccHHHHHHHhccCChHHHHHHHHH
Confidence 999999999999862110 1248899999999999999999999
Q ss_pred H--HHhh--cCCCCCCHHHHHHHHHHHHH
Q 012655 427 A--HAAL--ANPNGCDPSKFLLTVIDTAR 451 (459)
Q Consensus 427 a--~a~~--~~~~~it~~d~~~Al~~~~~ 451 (459)
| .|.. .....++.++|.+|+..+.+
T Consensus 648 A~~~a~~e~i~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 648 AALLALRESIEATEITWQHFEEALKAVRP 676 (693)
T ss_pred HHHHHHHHhcccccccHHHHHHHHHhhcc
Confidence 9 3333 24567899999999976644
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=313.82 Aligned_cols=246 Identities=28% Similarity=0.381 Sum_probs=218.8
Q ss_pred cccchhhhhhhhhhhHHHHHHHHHH----HHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCC
Q 012655 152 KEFDGMWESLIYESGLKQRLLHYAA----SALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (459)
Q Consensus 152 ~~~~~~~~~li~~~~~k~~L~~~~~----~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (459)
..++..++++.|.++..+.+.+.+. ++.+|.+.|++| +++||||||||||||.||||+|+..+..|
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~P-----PKGVLLYGPPGTGKTLLAkAVA~~T~AtF----- 213 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDP-----PKGVLLYGPPGTGKTLLAKAVANQTDATF----- 213 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCC-----CCceEeeCCCCCcHHHHHHHHHhccCceE-----
Confidence 3344468999999998888888876 466899999998 89999999999999999999999987665
Q ss_pred cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHH
Q 012655 228 QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (459)
Q Consensus 228 ~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~ 307 (459)
+.+.++++..+|.|+..+.++.+|..|++ .+|+|+||||||.++.+|.....+++ ...+|.+-+||++||
T Consensus 214 ----IrvvgSElVqKYiGEGaRlVRelF~lAre-----kaPsIIFiDEIDAIg~kR~d~~t~gD-rEVQRTmleLL~qlD 283 (406)
T COG1222 214 ----IRVVGSELVQKYIGEGARLVRELFELARE-----KAPSIIFIDEIDAIGAKRFDSGTSGD-REVQRTMLELLNQLD 283 (406)
T ss_pred ----EEeccHHHHHHHhccchHHHHHHHHHHhh-----cCCeEEEEechhhhhcccccCCCCch-HHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998 69999999999999999987666554 455778888999999
Q ss_pred hhcCCCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhh
Q 012655 308 KLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKE 385 (459)
Q Consensus 308 ~l~~~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 385 (459)
++...+++-||++||+++.||+|++ +|||++|+||.|+.+.|.+||+.+.+++.-..
T Consensus 284 GFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~--------------------- 342 (406)
T COG1222 284 GFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLAD--------------------- 342 (406)
T ss_pred CCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCcc---------------------
Confidence 9999999999999999999999999 89999999999999999999999999862111
Q ss_pred cCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHh
Q 012655 386 KLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKER 454 (459)
Q Consensus 386 ~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~ 454 (459)
..++..||+.|+|+||.+|+.+|..| .|....+..+|.+||.+|.++.+....
T Consensus 343 ----------------dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 343 ----------------DVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred ----------------CcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccc
Confidence 11488999999999999999999999 888899999999999999999887553
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-37 Score=310.89 Aligned_cols=236 Identities=29% Similarity=0.391 Sum_probs=200.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHH----HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceE
Q 012655 156 GMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (459)
-.|+++.+.++++.+|..++.++ ..|...|+++ +.+|||+||||||||.|||++|++.+..|
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~-----PsGvLL~GPPGCGKTLlAKAVANEag~NF--------- 573 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA-----PSGVLLCGPPGCGKTLLAKAVANEAGANF--------- 573 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC-----CCceEEeCCCCccHHHHHHHHhhhccCce---------
Confidence 45999999999999998887665 4788888886 78999999999999999999999998777
Q ss_pred EEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
+.|.+.+|+++|+|++++.++.+|++++. ..|||+|+||+|.|.+.|.... ...+.|++|+||+.||++..
T Consensus 574 isVKGPELlNkYVGESErAVR~vFqRAR~-----saPCVIFFDEiDaL~p~R~~~~----s~~s~RvvNqLLtElDGl~~ 644 (802)
T KOG0733|consen 574 ISVKGPELLNKYVGESERAVRQVFQRARA-----SAPCVIFFDEIDALVPRRSDEG----SSVSSRVVNQLLTELDGLEE 644 (802)
T ss_pred EeecCHHHHHHHhhhHHHHHHHHHHHhhc-----CCCeEEEecchhhcCcccCCCC----chhHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999998 5999999999999999996533 45668999999999999999
Q ss_pred CCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCc
Q 012655 312 SPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (459)
Q Consensus 312 ~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 389 (459)
..++.||++||+|+.+|+|++ +|||..+|++.|+.++|.+||+...++. + . ....
T Consensus 645 R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~-k--~----pl~~---------------- 701 (802)
T KOG0733|consen 645 RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNT-K--P----PLSS---------------- 701 (802)
T ss_pred ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccC-C--C----CCCc----------------
Confidence 999999999999999999999 8999999999999999999999988852 1 0 0111
Q ss_pred hhHHhhhhhhHHHHHHHHHHHH--ccCCChHHHhchHHHH--HHhhc----C------------CCCCCHHHHHHHHHHH
Q 012655 390 PDIQEADRSQHFYKQLLEAAEA--CEGLSGRSLRKLPFLA--HAALA----N------------PNGCDPSKFLLTVIDT 449 (459)
Q Consensus 390 ~~i~~~~~~~~~~~~L~~la~~--~~G~Sgr~L~~L~~~a--~a~~~----~------------~~~it~~d~~~Al~~~ 449 (459)
...|.+||+. |+||||.||..|+..| .|... . ...++..+|.+|+++.
T Consensus 702 ------------dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i 769 (802)
T KOG0733|consen 702 ------------DVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRI 769 (802)
T ss_pred ------------ccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhc
Confidence 1247788875 5699999999999888 33211 0 1135677899988764
No 5
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=279.03 Aligned_cols=275 Identities=22% Similarity=0.284 Sum_probs=223.1
Q ss_pred cccccccccccceeEEEecCCCCCCccccCCCC-------cccccccccCccccchhhhhhhhhhhHHHH---HHHHHHH
Q 012655 108 NHDILLFWQVKPVVQVFQLSEEGPCEELSGDGQ-------LSSFNEWILPAKEFDGMWESLIYESGLKQR---LLHYAAS 177 (459)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~lP~~~~~~~~~~li~~~~~k~~---L~~~~~~ 177 (459)
..+.+.|++-....+.|+.....|......... .........+. -.++++||+++.|+. +.+|+.+
T Consensus 67 ~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~~~~~~~e~~~~----it~ddViGqEeAK~kcrli~~yLen 142 (368)
T COG1223 67 REGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLETPREEDREIISD----ITLDDVIGQEEAKRKCRLIMEYLEN 142 (368)
T ss_pred ecCceEeecccccccceeEEEEeCCCCceecceEEEEecCcchhhhhhhcc----ccHhhhhchHHHHHHHHHHHHHhhC
Confidence 345567777777777787766555543221110 00001112233 358999999998875 7799999
Q ss_pred HHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHH
Q 012655 178 ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQK 257 (459)
Q Consensus 178 ~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~ 257 (459)
+..|.++. +++||+|||||||||++||++|++...++ +.+++.++.+.++|+..+.+..+|+.
T Consensus 143 Pe~Fg~WA--------PknVLFyGppGTGKTm~Akalane~kvp~---------l~vkat~liGehVGdgar~Ihely~r 205 (368)
T COG1223 143 PERFGDWA--------PKNVLFYGPPGTGKTMMAKALANEAKVPL---------LLVKATELIGEHVGDGARRIHELYER 205 (368)
T ss_pred hHHhcccC--------cceeEEECCCCccHHHHHHHHhcccCCce---------EEechHHHHHHHhhhHHHHHHHHHHH
Confidence 99998865 67899999999999999999999998887 89999999999999999999999999
Q ss_pred HHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCe
Q 012655 258 IQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADI 337 (459)
Q Consensus 258 ~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~ 337 (459)
+.+. +|||+||||+|.++-.|.-.- ..++...++|+||+.||+++.+..++.|++||.++.||+++++||..
T Consensus 206 A~~~-----aPcivFiDE~DAiaLdRryQe---lRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEe 277 (368)
T COG1223 206 ARKA-----APCIVFIDELDAIALDRRYQE---LRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEE 277 (368)
T ss_pred HHhc-----CCeEEEehhhhhhhhhhhHHH---hcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhh
Confidence 9984 999999999999987764321 23456789999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCCh
Q 012655 338 KAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSG 417 (459)
Q Consensus 338 ~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sg 417 (459)
.|+|..|+.++|.+|++.+++++.- . ....+..+++.+.||||
T Consensus 278 EIEF~LP~~eEr~~ile~y~k~~Pl---------p----------------------------v~~~~~~~~~~t~g~Sg 320 (368)
T COG1223 278 EIEFKLPNDEERLEILEYYAKKFPL---------P----------------------------VDADLRYLAAKTKGMSG 320 (368)
T ss_pred eeeeeCCChHHHHHHHHHHHHhCCC---------c----------------------------cccCHHHHHHHhCCCCc
Confidence 9999999999999999999998610 0 11137899999999999
Q ss_pred HHHhchH-HHH--HHhhcCCCCCCHHHHHHHHHH
Q 012655 418 RSLRKLP-FLA--HAALANPNGCDPSKFLLTVID 448 (459)
Q Consensus 418 r~L~~L~-~~a--~a~~~~~~~it~~d~~~Al~~ 448 (459)
|||+.=+ ..| .|...++..++.+|+..|+.+
T Consensus 321 RdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 321 RDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred hhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 9998744 344 777889999999999999987
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-33 Score=271.29 Aligned_cols=236 Identities=31% Similarity=0.392 Sum_probs=199.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHh--cCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEE
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAE--KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~--~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (459)
-|+++.|..+.|+-|.+.+..++.+++ .|+.. +-++||++||||||||.|||++|.+++..| +.|
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~Girr----PWkgvLm~GPPGTGKTlLAKAvATEc~tTF---------FNV 276 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRR----PWKGVLMVGPPGTGKTLLAKAVATECGTTF---------FNV 276 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccc----ccceeeeeCCCCCcHHHHHHHHHHhhcCeE---------EEe
Confidence 499999999999999999999998887 34332 258999999999999999999999998766 999
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC--
Q 012655 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS-- 312 (459)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~-- 312 (459)
.++.+.++|-|++++.++-+|+.++.. +|.+|||||||+|..+|.. .+|...+.|+-++||.+||++...
T Consensus 277 SsstltSKwRGeSEKlvRlLFemARfy-----APStIFiDEIDslcs~RG~---s~EHEaSRRvKsELLvQmDG~~~t~e 348 (491)
T KOG0738|consen 277 SSSTLTSKWRGESEKLVRLLFEMARFY-----APSTIFIDEIDSLCSQRGG---SSEHEASRRVKSELLVQMDGVQGTLE 348 (491)
T ss_pred chhhhhhhhccchHHHHHHHHHHHHHh-----CCceeehhhHHHHHhcCCC---ccchhHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999885 8999999999999999865 356677899999999999987532
Q ss_pred --CCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 --PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 --~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
..++|+++||.|+.||+||++||...|++|.|+.+.|..+++.++..... .+.
T Consensus 349 ~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~---------~~~---------------- 403 (491)
T KOG0738|consen 349 NSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL---------DDP---------------- 403 (491)
T ss_pred cceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC---------CCC----------------
Confidence 34889999999999999999999999999999999999999999987421 111
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhh-----------------cCCCCCCHHHHHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAAL-----------------ANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~-----------------~~~~~it~~d~~~Al~~~~ 450 (459)
..+..||+.++||||.||+.+|..| ++.. .-...++..||.+|+++..
T Consensus 404 ------------~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~ 470 (491)
T KOG0738|consen 404 ------------VNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVR 470 (491)
T ss_pred ------------ccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcC
Confidence 2377788888888888888888777 2221 0124588999999997754
No 7
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-33 Score=277.89 Aligned_cols=240 Identities=25% Similarity=0.338 Sum_probs=207.6
Q ss_pred CccccchhhhhhhhhhhHHHHHH---HHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCC
Q 012655 150 PAKEFDGMWESLIYESGLKQRLL---HYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY 226 (459)
Q Consensus 150 P~~~~~~~~~~li~~~~~k~~L~---~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~ 226 (459)
|.....-.|+++-|-++.|+.|. +|++.|..|.+.|=.- +++|||.||||||||.|||++|++.++||
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKL-----PKGVLLvGPPGTGKTlLARAvAGEA~VPF---- 365 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKL-----PKGVLLVGPPGTGKTLLARAVAGEAGVPF---- 365 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcC-----CCceEEeCCCCCchhHHHHHhhcccCCCe----
Confidence 44444455899999999988765 6677788999877543 68999999999999999999999999988
Q ss_pred CcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHH
Q 012655 227 PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (459)
Q Consensus 227 ~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (459)
++..++++-..++|...+.++.+|+.++. .+|||+||||||.+..+|.. .+.......+|+||..|
T Consensus 366 -----F~~sGSEFdEm~VGvGArRVRdLF~aAk~-----~APcIIFIDEiDavG~kR~~----~~~~y~kqTlNQLLvEm 431 (752)
T KOG0734|consen 366 -----FYASGSEFDEMFVGVGARRVRDLFAAAKA-----RAPCIIFIDEIDAVGGKRNP----SDQHYAKQTLNQLLVEM 431 (752)
T ss_pred -----EeccccchhhhhhcccHHHHHHHHHHHHh-----cCCeEEEEechhhhcccCCc----cHHHHHHHHHHHHHHHh
Confidence 88888888888999999999999999997 59999999999999988843 22226688999999999
Q ss_pred HhhcCCCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHh
Q 012655 307 DKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILK 384 (459)
Q Consensus 307 ~~l~~~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 384 (459)
|+++++..+|||++||.|+.||+|+. +|||+.+.+|.|+...|.+||+.++.+....+.+
T Consensus 432 DGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~V------------------ 493 (752)
T KOG0734|consen 432 DGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDV------------------ 493 (752)
T ss_pred cCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCC------------------
Confidence 99999999999999999999999999 8999999999999999999999999986322211
Q ss_pred hcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHH
Q 012655 385 EKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 385 ~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~ 449 (459)
.+.-||+.+.||||.||.+|+..| .|...+...+|+.++..|-.+.
T Consensus 494 -------------------D~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 494 -------------------DPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRI 541 (752)
T ss_pred -------------------CHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhhe
Confidence 366889999999999999999998 8888999999999998886554
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-33 Score=280.57 Aligned_cols=211 Identities=32% Similarity=0.442 Sum_probs=183.5
Q ss_pred hhhhhhhhhhHHHHHHHH---HHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEE
Q 012655 157 MWESLIYESGLKQRLLHY---AASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~---~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (459)
-|+++.|.+.....|.+. +..+..|...|+.| +++||||||||||||+||+++|+++++|| +.
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~P-----prGvLlHGPPGCGKT~lA~AiAgel~vPf---------~~ 253 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRP-----PRGVLLHGPPGCGKTSLANAIAGELGVPF---------LS 253 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCC-----CCceeeeCCCCccHHHHHHHHhhhcCCce---------Ee
Confidence 588899888766655544 45677899999998 89999999999999999999999999988 99
Q ss_pred EccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC-
Q 012655 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS- 312 (459)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~- 312 (459)
|++.++.+.+.|++++.++.+|++++. ..|||+||||||.++++|..+ +.....|++.+|++.||++...
T Consensus 254 isApeivSGvSGESEkkiRelF~~A~~-----~aPcivFiDeIDAI~pkRe~a----qreMErRiVaQLlt~mD~l~~~~ 324 (802)
T KOG0733|consen 254 ISAPEIVSGVSGESEKKIRELFDQAKS-----NAPCIVFIDEIDAITPKREEA----QREMERRIVAQLLTSMDELSNEK 324 (802)
T ss_pred ecchhhhcccCcccHHHHHHHHHHHhc-----cCCeEEEeecccccccchhhH----HHHHHHHHHHHHHHhhhcccccc
Confidence 999999999999999999999999998 499999999999999999753 3345589999999999998654
Q ss_pred ---CCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcC
Q 012655 313 ---PNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (459)
Q Consensus 313 ---~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 387 (459)
..++||++||+|+++|++++ +|||+.|.++.|++.+|.+||+..++.+.-.|.+
T Consensus 325 ~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~--------------------- 383 (802)
T KOG0733|consen 325 TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF--------------------- 383 (802)
T ss_pred cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc---------------------
Confidence 45999999999999999999 8999999999999999999999999987332221
Q ss_pred CchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 388 SNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 388 ~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
.+..||+.|.||.|.||..|+..|
T Consensus 384 ----------------d~~qlA~lTPGfVGADL~AL~~~A 407 (802)
T KOG0733|consen 384 ----------------DFKQLAKLTPGFVGADLMALCREA 407 (802)
T ss_pred ----------------CHHHHHhcCCCccchhHHHHHHHH
Confidence 266788888888888888888777
No 9
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-31 Score=257.02 Aligned_cols=225 Identities=30% Similarity=0.418 Sum_probs=187.8
Q ss_pred ccCccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCC
Q 012655 148 ILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (459)
Q Consensus 148 ~lP~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (459)
.+|..+.+-.|+++.|.+.+++.|.+.+..++..++.--.--...+.++||||||||||||.+|+++|.+.+.+|
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~f----- 155 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANF----- 155 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCc-----
Confidence 355567778899999999999999999876654443211111233578999999999999999999999998777
Q ss_pred cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHH
Q 012655 228 QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (459)
Q Consensus 228 ~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~ 307 (459)
+.+....+.++||+++.+.+..+|..+..+ .|+++||||+|++...|. .++......+-++|+...|
T Consensus 156 ----Inv~~s~lt~KWfgE~eKlv~AvFslAsKl-----~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WD 222 (386)
T KOG0737|consen 156 ----INVSVSNLTSKWFGEAQKLVKAVFSLASKL-----QPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWD 222 (386)
T ss_pred ----ceeeccccchhhHHHHHHHHHHHHhhhhhc-----CcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999875 999999999999999883 3333444667788999999
Q ss_pred hhcCCCC--EEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhh
Q 012655 308 KLKSSPN--VIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKE 385 (459)
Q Consensus 308 ~l~~~~~--viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 385 (459)
++..+.+ ++|+++||+|..+|.|+++|+...++++.|+..+|++|++..++... ..++
T Consensus 223 Gl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~---------~e~~----------- 282 (386)
T KOG0737|consen 223 GLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEK---------LEDD----------- 282 (386)
T ss_pred cccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccc---------cCcc-----------
Confidence 9976654 99999999999999999999999999999999999999999998631 1111
Q ss_pred cCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 386 KLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 386 ~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
.++.++|..|+||||+||+.+|+.|
T Consensus 283 -----------------vD~~~iA~~t~GySGSDLkelC~~A 307 (386)
T KOG0737|consen 283 -----------------VDLDEIAQMTEGYSGSDLKELCRLA 307 (386)
T ss_pred -----------------cCHHHHHHhcCCCcHHHHHHHHHHH
Confidence 1377899999999999999999888
No 10
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-31 Score=281.42 Aligned_cols=334 Identities=27% Similarity=0.348 Sum_probs=243.6
Q ss_pred cccCCcceeeEEEEecCCCccchHHHHHHHHHHHHhcCCccCCCCCCCCCCCchhhhccceEEEeeCCCCcccccccccc
Q 012655 36 LLAEDKFLVSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRICVSDTDEWVKNHDILLFW 115 (459)
Q Consensus 36 ~~~~~~~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (459)
+.+++++..++++.+++ ..+|.+++..+++.|.... +.+...++.......+++..............
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~ei~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 202 (494)
T COG0464 135 KRRPGRFDREIEVNLPD-EAGRLEILQIHTRLMFLGP-----------PGTGKTLAARTVGKSGADLGALAKEAALRELR 202 (494)
T ss_pred HhCccccceeeecCCCC-HHHHHHHHHHHHhcCCCcc-----------cccHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 36799999999999997 7777888888887776541 22223333333333333332222121111111
Q ss_pred cccceeEEEecCCCCCCccccCCCCcccccccccC-----ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhc----CC
Q 012655 116 QVKPVVQVFQLSEEGPCEELSGDGQLSSFNEWILP-----AKEFDGMWESLIYESGLKQRLLHYAASALMFAEK----GV 186 (459)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP-----~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~~----g~ 186 (459)
+.. ...........+.....+.. ..| .......|+++.|.+.+|+.+.+.+..+..+++. |+
T Consensus 203 r~~--------~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~ 273 (494)
T COG0464 203 RAI--------DLVGEYIGVTEDDFEEALKK-VLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGL 273 (494)
T ss_pred hhh--------ccCcccccccHHHHHHHHHh-cCcccccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCC
Confidence 110 00000000000000001110 011 1223346999999999999999998887765553 55
Q ss_pred CCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcc
Q 012655 187 NPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEEN 266 (459)
Q Consensus 187 ~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~ 266 (459)
.+ ++++|||||||||||+||+++|.+++.+| +.+.+.+++++|++++++.++.+|..++. .
T Consensus 274 ~~-----~~giLl~GpPGtGKT~lAkava~~~~~~f---------i~v~~~~l~sk~vGesek~ir~~F~~A~~-----~ 334 (494)
T COG0464 274 RP-----PKGVLLYGPPGTGKTLLAKAVALESRSRF---------ISVKGSELLSKWVGESEKNIRELFEKARK-----L 334 (494)
T ss_pred CC-----CCeeEEECCCCCCHHHHHHHHHhhCCCeE---------EEeeCHHHhccccchHHHHHHHHHHHHHc-----C
Confidence 54 78999999999999999999999998776 89999999999999999999999999996 4
Q ss_pred cchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhc--cCCeEEEeCCC
Q 012655 267 NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPP 344 (459)
Q Consensus 267 ~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P 344 (459)
.|+||||||+|++...|... ..+...+++++++++++++....+++||++||.++.+|+++++ ||+..+++++|
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~----~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~p 410 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPS----EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLP 410 (494)
T ss_pred CCcEEEEEchhhhhccCCCC----CchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCC
Confidence 89999999999999987432 1122369999999999999999999999999999999999998 99999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchH
Q 012655 345 TLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLP 424 (459)
Q Consensus 345 ~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~ 424 (459)
+.++|.+|++.++...... + .....+..+++.++|+||.|+..++
T Consensus 411 d~~~r~~i~~~~~~~~~~~----------------------------~-------~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 411 DLEERLEIFKIHLRDKKPP----------------------------L-------AEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred CHHHHHHHHHHHhcccCCc----------------------------c-------hhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999863110 0 0122478899999999999999999
Q ss_pred HHH--HHhhcC-CCCCCHHHHHHHHHH
Q 012655 425 FLA--HAALAN-PNGCDPSKFLLTVID 448 (459)
Q Consensus 425 ~~a--~a~~~~-~~~it~~d~~~Al~~ 448 (459)
..| .+.... ...++.+||.+|+..
T Consensus 456 ~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 456 REAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 999 344444 668999999999987
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.2e-32 Score=254.84 Aligned_cols=216 Identities=32% Similarity=0.480 Sum_probs=182.9
Q ss_pred cCccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhc--C-CCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC
Q 012655 149 LPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEK--G-VNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR 225 (459)
Q Consensus 149 lP~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~~--g-~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~ 225 (459)
-|+.. |+++.|.++.|+.|.+.+..++.|++. | -.| -++||||||||||||.||+++|-+.+..|
T Consensus 127 KPNVk----WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~P-----wrgiLLyGPPGTGKSYLAKAVATEAnSTF--- 194 (439)
T KOG0739|consen 127 KPNVK----WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKP-----WRGILLYGPPGTGKSYLAKAVATEANSTF--- 194 (439)
T ss_pred CCCCc----hhhhccchhHHHHHHhheeecccchhhhcCCCCc-----ceeEEEeCCCCCcHHHHHHHHHhhcCCce---
Confidence 46664 999999999999999999888887762 2 223 48899999999999999999999987555
Q ss_pred CCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH
Q 012655 226 YPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (459)
Q Consensus 226 ~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (459)
+.+.++++.++|.|++++.+..+|+.+++ ..|.|+||||||++...| ++++...+.|+-..||.+
T Consensus 195 ------FSvSSSDLvSKWmGESEkLVknLFemARe-----~kPSIIFiDEiDslcg~r----~enEseasRRIKTEfLVQ 259 (439)
T KOG0739|consen 195 ------FSVSSSDLVSKWMGESEKLVKNLFEMARE-----NKPSIIFIDEIDSLCGSR----SENESEASRRIKTEFLVQ 259 (439)
T ss_pred ------EEeehHHHHHHHhccHHHHHHHHHHHHHh-----cCCcEEEeehhhhhccCC----CCCchHHHHHHHHHHHHh
Confidence 89999999999999999999999999998 599999999999998877 467777889999999999
Q ss_pred HHhhc-CCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHh
Q 012655 306 MDKLK-SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILK 384 (459)
Q Consensus 306 l~~l~-~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 384 (459)
|++.- ....++|+++||.|+.||.++++||+..||+|.|+..+|..+++..+.....
T Consensus 260 MqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~---------------------- 317 (439)
T KOG0739|consen 260 MQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPH---------------------- 317 (439)
T ss_pred hhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCcc----------------------
Confidence 99873 4567999999999999999999999999999999999999999887765310
Q ss_pred hcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 385 EKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 385 ~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
.+ ....+.++++.++||||.|+.-++.-|
T Consensus 318 ------~L--------T~~d~~eL~~kTeGySGsDisivVrDa 346 (439)
T KOG0739|consen 318 ------VL--------TEQDFKELARKTEGYSGSDISIVVRDA 346 (439)
T ss_pred ------cc--------chhhHHHHHhhcCCCCcCceEEEehhh
Confidence 00 122477788888888888877665444
No 12
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=264.64 Aligned_cols=242 Identities=26% Similarity=0.359 Sum_probs=201.4
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHH----HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcce
Q 012655 155 DGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (459)
+-.|+++.|.+..|+.+.+.+..+ ..|...|+++ ++++|||||||||||++++++|+.++.++
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~-----pkgvLL~GppGTGKT~LAkalA~~l~~~f-------- 207 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDP-----PRGVLLYGPPGTGKTMLAKAVAHHTTATF-------- 207 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCC-----CceEEEECCCCCCHHHHHHHHHHhcCCCE--------
Confidence 345999999999999999887654 4677778776 89999999999999999999999987665
Q ss_pred EEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc
Q 012655 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (459)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~ 310 (459)
+.+.+..+..+|.+++.+.++.+|..+.. ..|+||||||+|.+...+....++. .....+.+..++..++++.
T Consensus 208 -i~i~~s~l~~k~~ge~~~~lr~lf~~A~~-----~~P~ILfIDEID~i~~~r~~~~~~~-d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 208 -IRVVGSEFVQKYLGEGPRMVRDVFRLARE-----NAPSIIFIDEVDSIATKRFDAQTGA-DREVQRILLELLNQMDGFD 280 (398)
T ss_pred -EEEehHHHHHHhcchhHHHHHHHHHHHHh-----cCCeEEEEECHhhhccccccccCCc-cHHHHHHHHHHHHHhhccC
Confidence 78888888889999988889999988776 4899999999999988764433222 2234577888889998887
Q ss_pred CCCCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCC
Q 012655 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (459)
Q Consensus 311 ~~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 388 (459)
...+++||+|||.++.+|+++++ |||..++++.|+.++|.+||+.++.+.. . ..
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~---l------~~--------------- 336 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN---L------SE--------------- 336 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC---C------Cc---------------
Confidence 77889999999999999999985 9999999999999999999998887631 0 00
Q ss_pred chhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHH
Q 012655 389 NPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKE 453 (459)
Q Consensus 389 ~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~ 453 (459)
...+..+|+.++||||+||+.++..| .|...+...++.+||.+|++...+..
T Consensus 337 -------------dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 337 -------------EVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKT 390 (398)
T ss_pred -------------ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhcc
Confidence 11367889999999999999999999 55566778999999999999987653
No 13
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-31 Score=272.74 Aligned_cols=240 Identities=27% Similarity=0.408 Sum_probs=197.0
Q ss_pred cCccccchhhhhhhhhhhHHHHHHHHHHHHHHHHh---cCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC
Q 012655 149 LPAKEFDGMWESLIYESGLKQRLLHYAASALMFAE---KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR 225 (459)
Q Consensus 149 lP~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~---~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~ 225 (459)
+|+.. |+++.|.+++|..+++.+..|+.+++ .|..+ ..+||||||||||||.+|||+|-++...|
T Consensus 666 IPnV~----WdDVGGLeevK~eIldTIqlPL~hpeLfssglrk-----RSGILLYGPPGTGKTLlAKAVATEcsL~F--- 733 (953)
T KOG0736|consen 666 IPNVS----WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRK-----RSGILLYGPPGTGKTLLAKAVATECSLNF--- 733 (953)
T ss_pred CCccc----hhcccCHHHHHHHHHHHhcCcccChhhhhccccc-----cceeEEECCCCCchHHHHHHHHhhceeeE---
Confidence 66664 99999999999999999988665554 34443 67899999999999999999999998777
Q ss_pred CCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH
Q 012655 226 YPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (459)
Q Consensus 226 ~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (459)
+.+.+.+++.+|+|+++.+++++|++|+. .+|||+|+||+|++++.|...- ...+-..|++.+||..
T Consensus 734 ------lSVKGPELLNMYVGqSE~NVR~VFerAR~-----A~PCVIFFDELDSlAP~RG~sG--DSGGVMDRVVSQLLAE 800 (953)
T KOG0736|consen 734 ------LSVKGPELLNMYVGQSEENVREVFERARS-----AAPCVIFFDELDSLAPNRGRSG--DSGGVMDRVVSQLLAE 800 (953)
T ss_pred ------EeecCHHHHHHHhcchHHHHHHHHHHhhc-----cCCeEEEeccccccCccCCCCC--CccccHHHHHHHHHHH
Confidence 89999999999999999999999999998 4999999999999999986532 2222346999999999
Q ss_pred HHhhcC--CCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCH-HHHHHHHHHHHHHHHHhccccCCccccCCcccch
Q 012655 306 MDKLKS--SPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTL-QARYEILRSCLQELIRTGIISNFQDCDQSMLPNF 380 (459)
Q Consensus 306 l~~l~~--~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~-~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~ 380 (459)
||++.. ...++||++||+|+.||++++ +|||..+|+++++. +.+..+++...+++.-..
T Consensus 801 LDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLde---------------- 864 (953)
T KOG0736|consen 801 LDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDE---------------- 864 (953)
T ss_pred hhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCC----------------
Confidence 999974 556999999999999999999 89999999988765 566788888888763211
Q ss_pred HHHhhcCCchhHHhhhhhhHHHHHHHHHHHHcc-CCChHHHhchHHHH-HHhhc--------C----------CCCCCHH
Q 012655 381 SILKEKLSNPDIQEADRSQHFYKQLLEAAEACE-GLSGRSLRKLPFLA-HAALA--------N----------PNGCDPS 440 (459)
Q Consensus 381 ~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~-G~Sgr~L~~L~~~a-~a~~~--------~----------~~~it~~ 440 (459)
...|.++|+.|. .|+|.|+-.||.-| .++.. + .-.++.+
T Consensus 865 ---------------------dVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~e 923 (953)
T KOG0736|consen 865 ---------------------DVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTME 923 (953)
T ss_pred ---------------------CcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHH
Confidence 124889999985 69999999999888 22211 1 1247899
Q ss_pred HHHHHHHHHH
Q 012655 441 KFLLTVIDTA 450 (459)
Q Consensus 441 d~~~Al~~~~ 450 (459)
||++|+++..
T Consensus 924 Dflks~~~l~ 933 (953)
T KOG0736|consen 924 DFLKSAKRLQ 933 (953)
T ss_pred HHHHHHHhcC
Confidence 9999987753
No 14
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.4e-31 Score=276.53 Aligned_cols=241 Identities=24% Similarity=0.338 Sum_probs=210.8
Q ss_pred hhhhhhhhhhhHHHHHH---HHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 156 GMWESLIYESGLKQRLL---HYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~---~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
-.|.++.|-+++|+.|. +|++++..|.+.|... ++++||+||||||||.||||+|++.+.|| +
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKi-----PkGvLL~GPPGTGKTLLAKAiAGEAgVPF---------~ 373 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKI-----PKGVLLVGPPGTGKTLLAKAIAGEAGVPF---------F 373 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcC-----cCceEEECCCCCcHHHHHHHHhcccCCce---------e
Confidence 46899999999998766 4556789999999886 89999999999999999999999999998 8
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.++++++...+.+.....++.+|..++. ..|+|+||||||.+...|.....++........+|+|+..||++...
T Consensus 374 svSGSEFvE~~~g~~asrvr~lf~~ar~-----~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 374 SVSGSEFVEMFVGVGASRVRDLFPLARK-----NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred eechHHHHHHhcccchHHHHHHHHHhhc-----cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 9999999988888878899999999987 59999999999999999864334444456678999999999999888
Q ss_pred CCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
..+|++++||+++.+|++++ +|||+.++++.|+...|.+|++.++++....
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--------------------------- 501 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--------------------------- 501 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---------------------------
Confidence 88999999999999999999 8999999999999999999999999985211
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTAR 451 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~ 451 (459)
.....+..+|..+.||+|.+|..+|..| .|.+.+...++..+|..|+++.+.
T Consensus 502 ---------~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 502 ---------DEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIA 555 (774)
T ss_pred ---------cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhc
Confidence 0122466799999999999999999998 777888999999999999986543
No 15
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=6.9e-31 Score=288.81 Aligned_cols=235 Identities=31% Similarity=0.462 Sum_probs=195.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH----HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceE
Q 012655 156 GMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (459)
-.|++++|.+.+|+.|.+.+..+. .|...|+.+ ++++|||||||||||++|+++|++++.+|
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~-----~~giLL~GppGtGKT~lakalA~e~~~~f--------- 515 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRP-----PKGVLLFGPPGTGKTLLAKAVATESGANF--------- 515 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCC-----CceEEEECCCCCCHHHHHHHHHHhcCCCE---------
Confidence 359999999999999999887655 445556654 78999999999999999999999998666
Q ss_pred EEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
+.+.+.++.++|++++++.++.+|+.++. ..|+|+||||+|.+...+.... ......+++++|++.|+++..
T Consensus 516 i~v~~~~l~~~~vGese~~i~~~f~~A~~-----~~p~iifiDEid~l~~~r~~~~---~~~~~~~~~~~lL~~ldg~~~ 587 (733)
T TIGR01243 516 IAVRGPEILSKWVGESEKAIREIFRKARQ-----AAPAIIFFDEIDAIAPARGARF---DTSVTDRIVNQLLTEMDGIQE 587 (733)
T ss_pred EEEehHHHhhcccCcHHHHHHHHHHHHHh-----cCCEEEEEEChhhhhccCCCCC---CccHHHHHHHHHHHHhhcccC
Confidence 89999999999999999999999999987 4889999999999998774322 123456899999999999888
Q ss_pred CCCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCc
Q 012655 312 SPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (459)
Q Consensus 312 ~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 389 (459)
..+++||+|||.++.+|+++++ |||..+++++|+.++|.+||+.+.++.. ...
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~---------~~~---------------- 642 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP---------LAE---------------- 642 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC---------CCc----------------
Confidence 8899999999999999999994 9999999999999999999987665431 000
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhc------------------CCCCCCHHHHHHHHHHH
Q 012655 390 PDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALA------------------NPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 390 ~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~------------------~~~~it~~d~~~Al~~~ 449 (459)
...+..+|+.|+||||+||..++..| .+... ....++.+||.+|+...
T Consensus 643 ------------~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 643 ------------DVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKV 710 (733)
T ss_pred ------------cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHc
Confidence 11377899999999999999999888 23221 12368999999999754
No 16
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=7.3e-30 Score=261.39 Aligned_cols=249 Identities=25% Similarity=0.346 Sum_probs=206.6
Q ss_pred cchhhhhhhhhhhHHHHHHHHHHHH----HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcc
Q 012655 154 FDGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQC 229 (459)
Q Consensus 154 ~~~~~~~li~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~ 229 (459)
+...|+++.|.+..++.+.+++..+ ..|...|+.+ ++++|||||||||||++|+++|++++.++
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~-----p~gVLL~GPPGTGKT~LAraIA~el~~~f------- 245 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKP-----PKGVILYGPPGTGKTLLAKAVANETSATF------- 245 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCC-----CcEEEEECCCCCCHHHHHHHHHHhhCCCE-------
Confidence 3456999999999999998887654 4566677765 78999999999999999999999987655
Q ss_pred eEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh
Q 012655 230 QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309 (459)
Q Consensus 230 ~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l 309 (459)
+.+.+.++..+|.++....++.+|..+.. ..|+++||||+|.+..++....++++. ...+.+..++..++++
T Consensus 246 --i~V~~seL~~k~~Ge~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~kR~~~~sgg~~-e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 246 --LRVVGSELIQKYLGDGPKLVRELFRVAEE-----NAPSIVFIDEIDAIGTKRYDATSGGEK-EIQRTMLELLNQLDGF 317 (438)
T ss_pred --EEEecchhhhhhcchHHHHHHHHHHHHHh-----CCCcEEeHHHHHHHhccCCCCCCcccH-HHHHHHHHHHHHHhhh
Confidence 88888899999999988889999988775 478999999999999887655554432 3356667788888888
Q ss_pred cCCCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcC
Q 012655 310 KSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (459)
Q Consensus 310 ~~~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 387 (459)
....++.||++||.++.+|++++ +||+..++|+.|+.++|.+||+.++.++.- ..
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l---------~~-------------- 374 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL---------AE-------------- 374 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC---------Cc--------------
Confidence 77778999999999999999998 599999999999999999999988776410 00
Q ss_pred CchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 012655 388 SNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKERSELPD 459 (459)
Q Consensus 388 ~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~~~~~~ 459 (459)
...+..++..++|+||++|+.++..| .|...+...++.+||.+|+.+...+...+.|+
T Consensus 375 --------------dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~~~~~~~~ 434 (438)
T PTZ00361 375 --------------DVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYRKKGNIPE 434 (438)
T ss_pred --------------CcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhhcccCCCc
Confidence 01367889999999999999999988 66677788999999999999998877777664
No 17
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=6.7e-30 Score=265.36 Aligned_cols=236 Identities=18% Similarity=0.246 Sum_probs=192.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH-HHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEE
Q 012655 156 GMWESLIYESGLKQRLLHYAAS-ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~-~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (459)
..|+++.|.+.+|+.+.+.... .......|+++ ++++||+||||||||++|+++|++++.++ +.+
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~-----pkGILL~GPpGTGKTllAkaiA~e~~~~~---------~~l 290 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPT-----PRGLLLVGIQGTGKSLTAKAIANDWQLPL---------LRL 290 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCC-----CceEEEECCCCCcHHHHHHHHHHHhCCCE---------EEE
Confidence 3599999999999988765432 22344556664 79999999999999999999999998777 889
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCC
Q 012655 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (459)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~ 314 (459)
++..++++|++++.+.++.+|+.++. .+|+||||||+|.+...+.. .++.+...++++.+++.|+. ....
T Consensus 291 ~~~~l~~~~vGese~~l~~~f~~A~~-----~~P~IL~IDEID~~~~~~~~---~~d~~~~~rvl~~lL~~l~~--~~~~ 360 (489)
T CHL00195 291 DVGKLFGGIVGESESRMRQMIRIAEA-----LSPCILWIDEIDKAFSNSES---KGDSGTTNRVLATFITWLSE--KKSP 360 (489)
T ss_pred EhHHhcccccChHHHHHHHHHHHHHh-----cCCcEEEehhhhhhhccccC---CCCchHHHHHHHHHHHHHhc--CCCc
Confidence 99999999999999999999998876 48999999999998765432 23334567888899998875 4567
Q ss_pred EEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhH
Q 012655 315 VIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDI 392 (459)
Q Consensus 315 viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 392 (459)
++||+|||.++.+|++++ +|||.+++++.|+.++|.+||+.++.+......
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~--------------------------- 413 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW--------------------------- 413 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc---------------------------
Confidence 999999999999999998 499999999999999999999999987421000
Q ss_pred HhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH-HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 393 QEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA-HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 393 ~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a-~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
....+..+|+.|+||||++|+.++..| +........++.+||..|+....
T Consensus 414 --------~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~lt~~dl~~a~~~~~ 464 (489)
T CHL00195 414 --------KKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREFTTDDILLALKQFI 464 (489)
T ss_pred --------cccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcC
Confidence 011377899999999999999999988 33445567799999999997654
No 18
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.2e-30 Score=235.66 Aligned_cols=245 Identities=27% Similarity=0.389 Sum_probs=208.6
Q ss_pred ccccchhhhhhhhhhhHHHHHHHHHH----HHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCC
Q 012655 151 AKEFDGMWESLIYESGLKQRLLHYAA----SALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY 226 (459)
Q Consensus 151 ~~~~~~~~~~li~~~~~k~~L~~~~~----~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~ 226 (459)
...++..++-+.|.+...+.+.+.+. .+.+|...|+.. ++++|||||||+|||.||+++|....
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQ-----PKGvlLygppgtGktLlaraVahht~------- 206 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQ-----PKGVLLYGPPGTGKTLLARAVAHHTD------- 206 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCC-----CcceEEecCCCCchhHHHHHHHhhcc-------
Confidence 34455667777777766666666554 567888877765 89999999999999999999999774
Q ss_pred CcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHH
Q 012655 227 PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (459)
Q Consensus 227 ~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (459)
|.++.+.++++..+|.|+..+.++.+|-.+++ .+|+|+|+||||++...|..+.+|++ +...+..-.|++++
T Consensus 207 --c~firvsgselvqk~igegsrmvrelfvmare-----hapsiifmdeidsigs~r~e~~~ggd-sevqrtmlellnql 278 (404)
T KOG0728|consen 207 --CTFIRVSGSELVQKYIGEGSRMVRELFVMARE-----HAPSIIFMDEIDSIGSSRVESGSGGD-SEVQRTMLELLNQL 278 (404)
T ss_pred --eEEEEechHHHHHHHhhhhHHHHHHHHHHHHh-----cCCceEeeecccccccccccCCCCcc-HHHHHHHHHHHHhc
Confidence 56699999999999999999999999999998 58999999999999999877666543 55577778889999
Q ss_pred HhhcCCCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHh
Q 012655 307 DKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILK 384 (459)
Q Consensus 307 ~~l~~~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 384 (459)
|++....++-||.+||+.+.+|++++ +|+|++|+||+|++++|.+|++..-.++.-.
T Consensus 279 dgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~--------------------- 337 (404)
T KOG0728|consen 279 DGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT--------------------- 337 (404)
T ss_pred cccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh---------------------
Confidence 99999999999999999999999999 7999999999999999999999888775210
Q ss_pred hcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHH
Q 012655 385 EKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARK 452 (459)
Q Consensus 385 ~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~ 452 (459)
. ..+|..+|+...|-||.+++..|..| +|....+..+|.+||.-|.....+.
T Consensus 338 r----------------gi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 338 R----------------GINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred c----------------ccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 0 01488999999999999999999999 8888899999999999999877654
No 19
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-30 Score=238.45 Aligned_cols=248 Identities=25% Similarity=0.362 Sum_probs=215.1
Q ss_pred cCccccchhhhhhhhhhhHHHHHHHHHHHHH----HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccC
Q 012655 149 LPAKEFDGMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS 224 (459)
Q Consensus 149 lP~~~~~~~~~~li~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~ 224 (459)
-|...++-.+.++.|.+-.|+.+.+.+..++ +|.+-|++| +++||+|||||||||+|++++|+.....|
T Consensus 145 ~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidp-----prgvllygppg~gktml~kava~~t~a~f-- 217 (408)
T KOG0727|consen 145 GPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDP-----PRGVLLYGPPGTGKTMLAKAVANHTTAAF-- 217 (408)
T ss_pred CCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCC-----CcceEEeCCCCCcHHHHHHHHhhccchhe--
Confidence 4666666778899999989999998887544 788889998 89999999999999999999999887655
Q ss_pred CCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHH
Q 012655 225 RYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (459)
Q Consensus 225 ~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (459)
+.++++++..+|.|+..+.++.+|..+++ ++|.|+||||+|.++.+|-.+..|.. ....+++-.|++
T Consensus 218 -------irvvgsefvqkylgegprmvrdvfrlake-----napsiifideidaiatkrfdaqtgad-revqril~elln 284 (408)
T KOG0727|consen 218 -------IRVVGSEFVQKYLGEGPRMVRDVFRLAKE-----NAPSIIFIDEIDAIATKRFDAQTGAD-REVQRILIELLN 284 (408)
T ss_pred -------eeeccHHHHHHHhccCcHHHHHHHHHHhc-----cCCcEEEeehhhhHhhhhcccccccc-HHHHHHHHHHHH
Confidence 99999999999999999999999999987 59999999999999999987776655 455788889999
Q ss_pred HHHhhcCCCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHH
Q 012655 305 QMDKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSI 382 (459)
Q Consensus 305 ~l~~l~~~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 382 (459)
+||++....++-||.+||+.+.+|++++ +|.|++|+||.|+..+++-++..+..++.- .+.
T Consensus 285 qmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l---------s~~-------- 347 (408)
T KOG0727|consen 285 QMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL---------SDE-------- 347 (408)
T ss_pred hccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC---------Ccc--------
Confidence 9999999999999999999999999999 799999999999999999999988887521 111
Q ss_pred HhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHH
Q 012655 383 LKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKE 453 (459)
Q Consensus 383 ~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~ 453 (459)
..|..+..+.+..||.++..+|..| +|...++..+...||.+|....+++-
T Consensus 348 --------------------vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 348 --------------------VDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred --------------------cCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCCc
Confidence 1356666777889999999999999 88888999999999999998877653
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=1.6e-29 Score=258.21 Aligned_cols=244 Identities=29% Similarity=0.391 Sum_probs=199.3
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHH----HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcce
Q 012655 155 DGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (459)
...|++++|.++.++.+.+++..+ ..|...|+.+ ++++|||||||||||++|+++|+.++.++
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~-----p~gvLL~GppGtGKT~lAkaia~~~~~~~-------- 193 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEP-----PKGVLLYGPPGTGKTLLAKAVAHETNATF-------- 193 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCC-----CCceEEECCCCCChHHHHHHHHHHhCCCE--------
Confidence 456999999999999998887654 4566677776 78999999999999999999999997665
Q ss_pred EEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc
Q 012655 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (459)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~ 310 (459)
+.+++.++..+|.+++.+.++.+|+.+.. ..|++|||||+|.+...+.....++. ....+.+..++..++++.
T Consensus 194 -i~v~~~~l~~~~~g~~~~~i~~~f~~a~~-----~~p~IlfiDEiD~l~~~r~~~~~~~~-~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 194 -IRVVGSELVQKFIGEGARLVRELFELARE-----KAPSIIFIDEIDAIAAKRTDSGTSGD-REVQRTLMQLLAEMDGFD 266 (389)
T ss_pred -EEeehHHHhHhhccchHHHHHHHHHHHHh-----cCCeEEEEechhhhhcccccCCCCcc-HHHHHHHHHHHHhccccC
Confidence 88999999999999988999999998876 47899999999999887654322221 223456667777788777
Q ss_pred CCCCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCC
Q 012655 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (459)
Q Consensus 311 ~~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 388 (459)
..++++||+|||.++.+|+++++ ||+..+++++|+.++|.+||+.++..... ..
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~---------~~--------------- 322 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL---------AD--------------- 322 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC---------CC---------------
Confidence 77789999999999999999984 99999999999999999999987765310 00
Q ss_pred chhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHhh
Q 012655 389 NPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKERS 455 (459)
Q Consensus 389 ~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~~ 455 (459)
...+..+|+.++||||++|+.++..| .|...+...++.+||.+|+.........
T Consensus 323 -------------~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 323 -------------DVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred -------------cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccccc
Confidence 01267899999999999999999999 5556677889999999999987655443
No 21
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=234.28 Aligned_cols=246 Identities=22% Similarity=0.324 Sum_probs=207.2
Q ss_pred ccchhhhhhhhhhhHHHHHHHHHHHH----HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCc
Q 012655 153 EFDGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (459)
Q Consensus 153 ~~~~~~~~li~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (459)
.+...++++.|.+...+.|.+.+..+ ..|...|+.| ++++|+|||||||||.+||+.|...+..|
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~p-----PKGvLmYGPPGTGKTlmARAcAaqT~aTF------ 233 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRP-----PKGVLMYGPPGTGKTLMARACAAQTNATF------ 233 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCC-----CCceEeeCCCCCcHHHHHHHHHHhccchH------
Confidence 34456889999998888888887654 4788888887 89999999999999999999999988776
Q ss_pred ceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh
Q 012655 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (459)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~ 308 (459)
+.+.+..+...|.|...+.++..|..+++ ..|+|+||||+|.+..+|..+-..+. ....+.+-.|+.++|+
T Consensus 234 ---LKLAgPQLVQMfIGdGAkLVRDAFaLAKE-----kaP~IIFIDElDAIGtKRfDSek~GD-REVQRTMLELLNQLDG 304 (424)
T KOG0652|consen 234 ---LKLAGPQLVQMFIGDGAKLVRDAFALAKE-----KAPTIIFIDELDAIGTKRFDSEKAGD-REVQRTMLELLNQLDG 304 (424)
T ss_pred ---HHhcchHHHhhhhcchHHHHHHHHHHhhc-----cCCeEEEEechhhhcccccccccccc-HHHHHHHHHHHHhhcC
Confidence 77889999999999999999999999887 59999999999999998855332222 2334555667788888
Q ss_pred hcCCCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhc
Q 012655 309 LKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (459)
Q Consensus 309 l~~~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 386 (459)
+.....+-||++||+.+.+|++++ +|.|++|+||.|+++.|..|++...+++.- .+
T Consensus 305 Fss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv---------~~------------- 362 (424)
T KOG0652|consen 305 FSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV---------SD------------- 362 (424)
T ss_pred CCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC---------CC-------------
Confidence 888889999999999999999998 799999999999999999999988877521 00
Q ss_pred CCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHhh
Q 012655 387 LSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKERS 455 (459)
Q Consensus 387 ~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~~ 455 (459)
..+..++|+.+++|.|.+++..|..| .|...+..+++-+||.+++....-+.+.
T Consensus 363 ---------------DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqakKka 418 (424)
T KOG0652|consen 363 ---------------DVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAKKKA 418 (424)
T ss_pred ---------------CCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHhhhh
Confidence 12478999999999999999999999 7777888999999999999887766554
No 22
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=9.3e-29 Score=260.67 Aligned_cols=238 Identities=25% Similarity=0.358 Sum_probs=197.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHH---HHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 156 GMWESLIYESGLKQRLLHYAA---SALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~---~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
-.|++++|.+++|+.+.+.+. .+..|...|..+ ++++||+||||||||++++++|++++.++ +
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~-----~~giLL~GppGtGKT~la~alA~~~~~~~---------~ 117 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPF---------F 117 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCC-----CCcEEEECCCCCCHHHHHHHHHHHcCCCe---------e
Confidence 359999999999988776554 444566666654 68899999999999999999999998776 8
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++.++.+.+.+.+.+.++.+|..+.. ..|+||||||+|.+...+....++.. ....++++.|+..|+++...
T Consensus 118 ~i~~~~~~~~~~g~~~~~l~~~f~~a~~-----~~p~Il~iDEid~l~~~r~~~~~~~~-~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 118 SISGSDFVEMFVGVGASRVRDLFEQAKK-----NAPCIIFIDEIDAVGRQRGAGLGGGN-DEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred eccHHHHHHHHhcccHHHHHHHHHHHHh-----cCCCEEEEechhhhhhccccCcCCcc-HHHHHHHHHHHhhhccccCC
Confidence 8888888888888888899999998876 47899999999999988765433322 23457889999999998888
Q ss_pred CCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
.+++||+|||.++.+|+++++ |||..++++.|+.++|.+|++.+++.... .
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~---------~------------------ 244 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL---------A------------------ 244 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC---------C------------------
Confidence 889999999999999999995 99999999999999999999998875310 0
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
....+..+|+.+.||||+||+.++..| .+...+...++.+||..|+.+..
T Consensus 245 ----------~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 245 ----------PDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred ----------cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 011367899999999999999999988 45556777899999999998764
No 23
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.7e-30 Score=238.62 Aligned_cols=248 Identities=25% Similarity=0.321 Sum_probs=212.4
Q ss_pred cchhhhhhhhhhhHHHHHHHHHHH----HHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcc
Q 012655 154 FDGMWESLIYESGLKQRLLHYAAS----ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQC 229 (459)
Q Consensus 154 ~~~~~~~li~~~~~k~~L~~~~~~----~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~ 229 (459)
+...+.++.|.+...+.+.+.+.. +..|.+.|+.| +++|+|||+||||||.||+++|+.....|
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikp-----PKGVIlyG~PGTGKTLLAKAVANqTSATF------- 247 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKP-----PKGVILYGEPGTGKTLLAKAVANQTSATF------- 247 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCC-----CCeeEEeCCCCCchhHHHHHHhcccchhh-------
Confidence 334688899998888888887764 56888889887 89999999999999999999999998777
Q ss_pred eEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh
Q 012655 230 QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309 (459)
Q Consensus 230 ~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l 309 (459)
+.+-++++..+|.++..+.++++|+.+.+ .+|+|+||||||.+..+|..+.||++. ...+.+-.||+++|++
T Consensus 248 --lRvvGseLiQkylGdGpklvRqlF~vA~e-----~apSIvFiDEIdAiGtKRyds~Sgger-EiQrtmLELLNQldGF 319 (440)
T KOG0726|consen 248 --LRVVGSELIQKYLGDGPKLVRELFRVAEE-----HAPSIVFIDEIDAIGTKRYDSNSGGER-EIQRTMLELLNQLDGF 319 (440)
T ss_pred --hhhhhHHHHHHHhccchHHHHHHHHHHHh-----cCCceEEeehhhhhccccccCCCccHH-HHHHHHHHHHHhccCc
Confidence 78899999999999999999999999987 499999999999999999999888874 3455556788999999
Q ss_pred cCCCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcC
Q 012655 310 KSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (459)
Q Consensus 310 ~~~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 387 (459)
...+.+-||.+||..+.+|++++ +|+|++|.|+.|++..+..|+......+.-..
T Consensus 320 dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~----------------------- 376 (440)
T KOG0726|consen 320 DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAE----------------------- 376 (440)
T ss_pred cccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhc-----------------------
Confidence 88889999999999999999999 79999999999999999999887776642111
Q ss_pred CchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 012655 388 SNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKERSELP 458 (459)
Q Consensus 388 ~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~~~~~ 458 (459)
..+|..+...-+-+||.+|+.+|..| .|....+..++.+||..|.........+-.|
T Consensus 377 --------------dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K~~g~~ 435 (440)
T KOG0726|consen 377 --------------DVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKKKEGVP 435 (440)
T ss_pred --------------cccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhcccCCc
Confidence 12366666667889999999999999 8888899999999999999888776654444
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.3e-29 Score=256.91 Aligned_cols=211 Identities=29% Similarity=0.398 Sum_probs=183.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHh----cCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAE----KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~----~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
-|+++.|..++|+.|.+.+.+|..|+. .++.- ..+||||||||||||.||.++|...+.+| |
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~-----~~giLLyGppGcGKT~la~a~a~~~~~~f---------i 730 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL-----RTGILLYGPPGCGKTLLASAIASNSNLRF---------I 730 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCccc-----ccceEEECCCCCcHHHHHHHHHhhCCeeE---------E
Confidence 499999999999999999987665544 44442 67899999999999999999999998766 9
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+.+.+++++|.|.++..++.+|.+|+. .+|||+|+||+|+++++|..... +-..|++|++|++||+...-
T Consensus 731 svKGPElL~KyIGaSEq~vR~lF~rA~~-----a~PCiLFFDEfdSiAPkRGhDsT----GVTDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 731 SVKGPELLSKYIGASEQNVRDLFERAQS-----AKPCILFFDEFDSIAPKRGHDST----GVTDRVVNQLLTELDGAEGL 801 (952)
T ss_pred EecCHHHHHHHhcccHHHHHHHHHHhhc-----cCCeEEEeccccccCcccCCCCC----CchHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999987 49999999999999999854222 34479999999999998887
Q ss_pred CCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
..+.|+++|.+|+.+|+|++ +|+|+.++.+.|++.+|.+|++.....+...
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~--------------------------- 854 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD--------------------------- 854 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc---------------------------
Confidence 88999999999999999999 7999999999999999999999877754211
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
.+..|..+|..++||||.||..|+..|
T Consensus 855 ----------~~vdl~~~a~~T~g~tgADlq~ll~~A 881 (952)
T KOG0735|consen 855 ----------TDVDLECLAQKTDGFTGADLQSLLYNA 881 (952)
T ss_pred ----------cccchHHHhhhcCCCchhhHHHHHHHH
Confidence 122478899999999999999999887
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-28 Score=254.81 Aligned_cols=238 Identities=24% Similarity=0.342 Sum_probs=206.5
Q ss_pred hhhhhhhhhhhHHHHHH---HHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 156 GMWESLIYESGLKQRLL---HYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~---~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
-.|.++.|.++.|+.+. ++++.+..|.+.|-.- +++++|+||||||||.|||++|++.++|| +
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGaki-----PkGvlLvGpPGTGKTLLAkAvAgEA~VPF---------f 212 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPF---------F 212 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhccccc-----ccceeEecCCCCCcHHHHHHHhcccCCCc---------e
Confidence 35889999999988765 5566777888877643 78999999999999999999999999998 8
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+.++++...+++-....++.+|.+++. .+|||+||||+|.+...|..+ .|+........+|++|..||++..+
T Consensus 213 ~iSGS~FVemfVGvGAsRVRdLF~qAkk-----~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 213 SISGSDFVEMFVGVGASRVRDLFEQAKK-----NAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred eccchhhhhhhcCCCcHHHHHHHHHhhc-----cCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCCCC
Confidence 8999999998999889999999999997 589999999999999999776 3444455567999999999999888
Q ss_pred CCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
..+++++.||+++.+|+|++ +|||+.+.++.|+...|++|++..+++..- ..
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l---------~~----------------- 340 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL---------AE----------------- 340 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC---------CC-----------------
Confidence 88999999999999999999 799999999999999999999977776311 00
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
...+..+|+.+.||||.+|.+++..| .|...+...++..+|.+|+.+..
T Consensus 341 -----------~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 341 -----------DVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVI 391 (596)
T ss_pred -----------cCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHh
Confidence 11366799999999999999999888 88888999999999999998765
No 26
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-28 Score=228.92 Aligned_cols=248 Identities=24% Similarity=0.360 Sum_probs=207.9
Q ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHH----HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCC
Q 012655 152 KEFDGMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (459)
Q Consensus 152 ~~~~~~~~~li~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (459)
..++-.+.++.|-.+..+.+.+.+..++ .|-..|++| +++||+|||||||||..||++|+..+.-|
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidp-----pkgvllygppgtgktl~aravanrtdacf----- 239 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDP-----PKGVLLYGPPGTGKTLCARAVANRTDACF----- 239 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCC-----CCceEEeCCCCCchhHHHHHHhcccCceE-----
Confidence 3445568888888787888888877654 566778887 89999999999999999999999886554
Q ss_pred cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHH
Q 012655 228 QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (459)
Q Consensus 228 ~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~ 307 (459)
+.+-++++..+|+++..+.++.+|+.++. ...|++|+||||.+...|-..-.|+. ....+.+-.++++||
T Consensus 240 ----irvigselvqkyvgegarmvrelf~mart-----kkaciiffdeidaiggarfddg~ggd-nevqrtmleli~qld 309 (435)
T KOG0729|consen 240 ----IRVIGSELVQKYVGEGARMVRELFEMART-----KKACIIFFDEIDAIGGARFDDGAGGD-NEVQRTMLELINQLD 309 (435)
T ss_pred ----EeehhHHHHHHHhhhhHHHHHHHHHHhcc-----cceEEEEeeccccccCccccCCCCCc-HHHHHHHHHHHHhcc
Confidence 99999999999999999999999999886 46799999999999988865433332 233566667888889
Q ss_pred hhcCCCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhh
Q 012655 308 KLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKE 385 (459)
Q Consensus 308 ~l~~~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 385 (459)
++.+.+++-|+.+||+|+.+|++++ +|.|++++|+.|+.+.|..|++...+.+.-.
T Consensus 310 gfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve---------------------- 367 (435)
T KOG0729|consen 310 GFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE---------------------- 367 (435)
T ss_pred CCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc----------------------
Confidence 9999999999999999999999999 7999999999999999999998877764110
Q ss_pred cCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHhhc
Q 012655 386 KLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKERSE 456 (459)
Q Consensus 386 ~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~~~ 456 (459)
.+ .+..-||+.|..-+|.+||..|..| .|..+.+...|..||++|+++.++....+
T Consensus 368 ----rd-----------ir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kvvkgy~kf 425 (435)
T KOG0729|consen 368 ----RD-----------IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYAKF 425 (435)
T ss_pred ----cc-----------hhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 01 1467889999999999999999999 77788888999999999999999876554
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=2.3e-27 Score=240.99 Aligned_cols=238 Identities=26% Similarity=0.384 Sum_probs=191.6
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHH----HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcce
Q 012655 155 DGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (459)
...|+++.|.++.++.+.+++..+ ..|...|+.+ ++++||+||||||||++|+++|+.++.++
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~-----p~gvLL~GppGtGKT~lakaia~~l~~~~-------- 184 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEP-----PKGVLLYGPPGTGKTLLAKAVAHETNATF-------- 184 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCC-----CceEEEECCCCCCHHHHHHHHHHhCCCCE--------
Confidence 346999999999999999887654 3566667665 78999999999999999999999997665
Q ss_pred EEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc
Q 012655 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (459)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~ 310 (459)
+.+.+..+...+.++....+..+|..+.. ..|++|+|||+|.+...+.....++. ....+.+..++..++.+.
T Consensus 185 -~~v~~~~l~~~~~g~~~~~i~~~f~~a~~-----~~p~il~iDEiD~l~~~~~~~~~~~~-~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 185 -IRVVGSELVRKYIGEGARLVREIFELAKE-----KAPSIIFIDEIDAIAAKRTDSGTSGD-REVQRTLMQLLAELDGFD 257 (364)
T ss_pred -EecchHHHHHHhhhHHHHHHHHHHHHHHh-----cCCcEEEhhhhhhhccccccCCCCcc-HHHHHHHHHHHHHhhCCC
Confidence 77777788888888888888888887765 47899999999999877654333322 223455667777777776
Q ss_pred CCCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCC
Q 012655 311 SSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (459)
Q Consensus 311 ~~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 388 (459)
..+++.||+|||.++.+|++++ +||+..++++.|+.++|.+|++.++..... ..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l---------~~--------------- 313 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL---------AE--------------- 313 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC---------Cc---------------
Confidence 6678999999999999999998 499999999999999999999887765310 00
Q ss_pred chhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHH
Q 012655 389 NPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 389 ~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~ 449 (459)
...+..+|+.+.||||++|+.++..| .|...+...++.+||.+|+...
T Consensus 314 -------------~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 314 -------------DVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred -------------cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 01267899999999999999999988 5666778899999999999764
No 28
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.95 E-value=5.9e-27 Score=243.08 Aligned_cols=274 Identities=23% Similarity=0.285 Sum_probs=200.8
Q ss_pred chhhhhhhhhhhHHHHHHHHHHH----HHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC-CCcc
Q 012655 155 DGMWESLIYESGLKQRLLHYAAS----ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR-YPQC 229 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~----~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~-~~~~ 229 (459)
+-.|++|.|.+..++.+.+.+.. +..|...|+.+ ++++|||||||||||++++++|+.++.++... ....
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~-----p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKP-----PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCC-----CcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 34599999999999998888765 44667777776 78999999999999999999999997653210 1223
Q ss_pred eEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh
Q 012655 230 QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309 (459)
Q Consensus 230 ~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l 309 (459)
.++.+.+.++.++|.+++.+.++.+|+.++.... ...|+|+||||+|.++..|.... ......+++++|+..|+++
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~-~g~p~IIfIDEiD~L~~~R~~~~---s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKAS-DGRPVIVFFDEMDSIFRTRGSGV---SSDVETTVVPQLLSELDGV 328 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhh-cCCCceEEEehhhhhhcccCCCc---cchHHHHHHHHHHHHhccc
Confidence 4567777888899999999999999999887543 24689999999999998764321 1223457889999999999
Q ss_pred cCCCCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcC
Q 012655 310 KSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (459)
Q Consensus 310 ~~~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 387 (459)
...++++||+|||.++.||+++++ |||.+|++++|+.++|.+||+.++.... .+........++
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l--------------~l~~~l~~~~g~ 394 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL--------------PLDADLAEFDGD 394 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccC--------------CchHHHHHhcCC
Confidence 888899999999999999999996 9999999999999999999999987521 111111122444
Q ss_pred CchhHHhhhhhhHHHHH----------------HHHHHHHccCCChHHHhchHHHH--HHh----hcCCCCCCHHHHHHH
Q 012655 388 SNPDIQEADRSQHFYKQ----------------LLEAAEACEGLSGRSLRKLPFLA--HAA----LANPNGCDPSKFLLT 445 (459)
Q Consensus 388 ~~~~i~~~~~~~~~~~~----------------L~~la~~~~G~Sgr~L~~L~~~a--~a~----~~~~~~it~~d~~~A 445 (459)
.+.++.......-.... -.+....++.+||..|+.++..| .|. ..+...++.+|+..|
T Consensus 395 ~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a 474 (512)
T TIGR03689 395 REATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAA 474 (512)
T ss_pred CHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHH
Confidence 44444333211100000 00111235678999999999999 222 234568999999999
Q ss_pred HHHHHH
Q 012655 446 VIDTAR 451 (459)
Q Consensus 446 l~~~~~ 451 (459)
+.+-..
T Consensus 475 ~~~e~~ 480 (512)
T TIGR03689 475 VLDEFR 480 (512)
T ss_pred HHHhhc
Confidence 976554
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=99.95 E-value=3.5e-27 Score=252.26 Aligned_cols=238 Identities=25% Similarity=0.340 Sum_probs=194.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHH---HHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 156 GMWESLIYESGLKQRLLHYAA---SALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~---~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
-.|++++|.++.|+.+.+.+. .+..|...|..+ ++++||+||||||||++|+++|++.+.++ +
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~-----p~gVLL~GPpGTGKT~LAralA~e~~~p~---------i 245 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIAGEAEVPF---------F 245 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCC-----CceEEEECCCCCCHHHHHHHHHHHhCCCe---------e
Confidence 469999999999988776654 344555556543 78899999999999999999999998776 8
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++.++...+.+.....++.+|..+.. ..|+||||||+|.+...|.....+. .......++.++..++++...
T Consensus 246 ~is~s~f~~~~~g~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~-~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 246 SISGSEFVEMFVGVGAARVRDLFKKAKE-----NSPCIVFIDEIDAVGRQRGAGIGGG-NDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred eccHHHHHHHhhhhhHHHHHHHHHHHhc-----CCCcEEEEecchhhhhcccCCCCCC-cHHHHHHHHHHHhhhccccCC
Confidence 8888888777777777778889988875 4889999999999988775433222 234467889999999988888
Q ss_pred CCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
.+++||++||.++.+|++++ +|||+.+.++.|+.++|.+||+.++++.. .
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~------------------------- 371 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---L------------------------- 371 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---c-------------------------
Confidence 88999999999999999998 59999999999999999999999887620 0
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
.....+..+|+.+.||||+||+.++..| .+...+...++.+||.+|+.+..
T Consensus 372 ---------~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 372 ---------SPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVI 424 (638)
T ss_pred ---------chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Confidence 0112478899999999999999999988 45566778899999999998764
No 30
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=1.4e-25 Score=242.22 Aligned_cols=241 Identities=22% Similarity=0.345 Sum_probs=196.6
Q ss_pred cccchhhhhhhhhhhHHHHHHHHHHH---HHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCc
Q 012655 152 KEFDGMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (459)
Q Consensus 152 ~~~~~~~~~li~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (459)
......|+++.+.+..++++.+.+.. +..+...+.. .+++++|+||||||||+++++++++++.++
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~-----~~~gill~G~~G~GKt~~~~~~a~~~~~~f------ 213 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGK-----IPKGVLMVGPPGTGKTLLAKAIAGEAKVPF------ 213 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCC-----CCCcEEEECCCCCCHHHHHHHHHHHcCCCE------
Confidence 44556799999999998888776553 2344444433 257799999999999999999999998776
Q ss_pred ceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh
Q 012655 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (459)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~ 308 (459)
+.+++.++...+.+.....++.+|..+.. ..|+||||||+|.+..+|...+.++. ....++++.++..|++
T Consensus 214 ---~~is~~~~~~~~~g~~~~~~~~~f~~a~~-----~~P~IifIDEiD~l~~~r~~~~~g~~-~~~~~~ln~lL~~mdg 284 (644)
T PRK10733 214 ---FTISGSDFVEMFVGVGASRVRDMFEQAKK-----AAPCIIFIDEIDAVGRQRGAGLGGGH-DEREQTLNQMLVEMDG 284 (644)
T ss_pred ---EEEehHHhHHhhhcccHHHHHHHHHHHHh-----cCCcEEEehhHhhhhhccCCCCCCCc-hHHHHHHHHHHHhhhc
Confidence 88888888888888888888999988765 47899999999999988765443332 3446789999999999
Q ss_pred hcCCCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhc
Q 012655 309 LKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (459)
Q Consensus 309 l~~~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 386 (459)
+.....+++|+|||.++.+|++++ +|||+.++++.|+.++|.+|++.++++.. ...
T Consensus 285 ~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~---------l~~------------- 342 (644)
T PRK10733 285 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---------LAP------------- 342 (644)
T ss_pred ccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC---------CCC-------------
Confidence 988888999999999999999999 49999999999999999999999887631 000
Q ss_pred CCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHH
Q 012655 387 LSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 387 ~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~ 449 (459)
...+..+|+.+.||||+||..++..| .|...+...++.+||.+|+...
T Consensus 343 ---------------~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 343 ---------------DIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred ---------------cCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 01255789999999999999999999 5666778889999999998655
No 31
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.1e-26 Score=228.88 Aligned_cols=236 Identities=28% Similarity=0.345 Sum_probs=195.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHh--cCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEE
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAE--KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~--~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (459)
-.|+++.|.+.+|+.+.+++..+...+. .|+.+ ..+++||.||||+|||.|++++|.+.+..| +.
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~----p~rglLLfGPpgtGKtmL~~aiAsE~~atf---------f~ 216 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLRE----PVRGLLLFGPPGTGKTMLAKAIATESGATF---------FN 216 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhcccchHhhhcccc----ccchhheecCCCCchHHHHHHHHhhhcceE---------ee
Confidence 3599999999999999999987665333 24332 257899999999999999999999998776 88
Q ss_pred EccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh--cC
Q 012655 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--KS 311 (459)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l--~~ 311 (459)
+.+.++.++|.|++++.++.+|.-++.. +|.|+||||+|+++.+| +..+...+.+...+++-+++.. ..
T Consensus 217 iSassLtsK~~Ge~eK~vralf~vAr~~-----qPsvifidEidslls~R----s~~e~e~srr~ktefLiq~~~~~s~~ 287 (428)
T KOG0740|consen 217 ISASSLTSKYVGESEKLVRALFKVARSL-----QPSVIFIDEIDSLLSKR----SDNEHESSRRLKTEFLLQFDGKNSAP 287 (428)
T ss_pred ccHHHhhhhccChHHHHHHHHHHHHHhc-----CCeEEEechhHHHHhhc----CCcccccchhhhhHHHhhhccccCCC
Confidence 9999999999999999999999999884 99999999999999998 5667677788888888887765 34
Q ss_pred CCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchh
Q 012655 312 SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPD 391 (459)
Q Consensus 312 ~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 391 (459)
..+++|++|||.|+.+|.++++||...+++|.|+.+.|..+|+..+.+. ..+.
T Consensus 288 ~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~-~~~l-------------------------- 340 (428)
T KOG0740|consen 288 DDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ-PNGL-------------------------- 340 (428)
T ss_pred CCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC-CCCc--------------------------
Confidence 5689999999999999999999999999999999999999999999884 1111
Q ss_pred HHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHH----h-----------hcCCCCCCHHHHHHHHHHH
Q 012655 392 IQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHA----A-----------LANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 392 i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a----~-----------~~~~~~it~~d~~~Al~~~ 449 (459)
....+..+++.++||||.|+..+|..|.. . ...-..++..||..|+...
T Consensus 341 ---------~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i 404 (428)
T KOG0740|consen 341 ---------SDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNI 404 (428)
T ss_pred ---------cHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhh
Confidence 12247789999999999999999887711 1 1123457778888887654
No 32
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.3e-27 Score=235.47 Aligned_cols=275 Identities=20% Similarity=0.261 Sum_probs=200.4
Q ss_pred CcccCCcceeeEEEEecCCCccchHHHHHHHHHHHHhcCCccCCCCCCCCCCCchhhhccceEEEeeCCCCccccccccc
Q 012655 35 PLLAEDKFLVSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRICVSDTDEWVKNHDILLF 114 (459)
Q Consensus 35 ~~~~~~~~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (459)
-||||||+|||+||+||| +++|+||+++|+.+|.++ +.+..+.|...++..++|++++|+.+.|+++.++++
T Consensus 385 ALLRPGRlEVqmEIsLPD-E~gRlQIl~IHT~rMre~-------~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~ 456 (744)
T KOG0741|consen 385 ALLRPGRLEVQMEISLPD-EKGRLQILKIHTKRMREN-------NKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAM 456 (744)
T ss_pred HhcCCCceEEEEEEeCCC-ccCceEEEEhhhhhhhhc-------CCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 379999999999999997 999999999999999998 666777889999999999999999999999999998
Q ss_pred cc-------------------ccceeEEEecCCCCCCccccCCCCcccccccccCccccchhhhhhhhhhhHHHHHHHHH
Q 012655 115 WQ-------------------VKPVVQVFQLSEEGPCEELSGDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYA 175 (459)
Q Consensus 115 ~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~li~~~~~k~~L~~~~ 175 (459)
++ +...++++.|.+.+|+.+.++++........++- +......++-.. ..+.+.+
T Consensus 457 nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~---~g~~v~~il~~G---~llv~qv 530 (744)
T KOG0741|consen 457 NRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMIN---WGPPVTRILDDG---KLLVQQV 530 (744)
T ss_pred HhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCcee---ecccHHHHHhhH---HHHHHHh
Confidence 87 4445566677777777777655433332222221 111122222111 1222333
Q ss_pred HHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhh--HHHHH
Q 012655 176 ASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESG--KLVAK 253 (459)
Q Consensus 176 ~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~--~~v~~ 253 (459)
+.+. +.+ -..+||+||||+|||+||..+|.....|| +.+-+.+-+.. ++|+. ..+.+
T Consensus 531 k~s~---~s~--------lvSvLl~Gp~~sGKTaLAA~iA~~S~FPF---------vKiiSpe~miG-~sEsaKc~~i~k 589 (744)
T KOG0741|consen 531 KNSE---RSP--------LVSVLLEGPPGSGKTALAAKIALSSDFPF---------VKIISPEDMIG-LSESAKCAHIKK 589 (744)
T ss_pred hccc---cCc--------ceEEEEecCCCCChHHHHHHHHhhcCCCe---------EEEeChHHccC-ccHHHHHHHHHH
Confidence 2211 112 24599999999999999999999998887 55544433322 23443 46889
Q ss_pred HHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCC-CEEEEEecCCCCcc-cHHH
Q 012655 254 LFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP-NVIILTTSNITAAI-DIAF 331 (459)
Q Consensus 254 ~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~-~viIi~Ttn~~~~l-d~al 331 (459)
+|..++. +...|+++|+++.|.... ...|..+.-++++|+-.+.+..+.+ +.+|++||...+.+ +-.+
T Consensus 590 ~F~DAYk-----S~lsiivvDdiErLiD~v-----pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i 659 (744)
T KOG0741|consen 590 IFEDAYK-----SPLSIIVVDDIERLLDYV-----PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGI 659 (744)
T ss_pred HHHHhhc-----CcceEEEEcchhhhhccc-----ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCH
Confidence 9999987 477899999999998864 5667888899999999988876655 58888888877776 4456
Q ss_pred hccCCeEEEeCCCCH-HHHHHHHH
Q 012655 332 VDRADIKAYVGPPTL-QARYEILR 354 (459)
Q Consensus 332 ~~R~~~~i~~~~P~~-~~r~~Il~ 354 (459)
.+.|+..+.+|..+. ++..+++.
T Consensus 660 ~~~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 660 LDCFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred HHhhhheeecCccCchHHHHHHHH
Confidence 688999999998776 45555544
No 33
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-25 Score=224.61 Aligned_cols=222 Identities=26% Similarity=0.386 Sum_probs=180.9
Q ss_pred HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHH
Q 012655 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ 259 (459)
Q Consensus 180 ~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~ 259 (459)
...+.|+.+ -+++|||||||||||.+||.|...++.+- | -.+|+.+++++|+|+++..++++|..|.
T Consensus 247 vie~lGi~H-----VKGiLLyGPPGTGKTLiARqIGkMLNAre----P----KIVNGPeIL~KYVGeSE~NvR~LFaDAE 313 (744)
T KOG0741|consen 247 VIEQLGIKH-----VKGILLYGPPGTGKTLIARQIGKMLNARE----P----KIVNGPEILNKYVGESEENVRKLFADAE 313 (744)
T ss_pred HHHHcCccc-----eeeEEEECCCCCChhHHHHHHHHHhcCCC----C----cccCcHHHHHHhhcccHHHHHHHHHhHH
Confidence 444456554 68999999999999999999999997542 2 3489999999999999999999999998
Q ss_pred HHHHh---cccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHh--cc
Q 012655 260 EMVEE---ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DR 334 (459)
Q Consensus 260 ~~~~~---~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~--~R 334 (459)
+-... .+...|+++||||.+..+|.+.- +..+-...++|+||..||+...-.+++||+-||+.+.+|+|++ +|
T Consensus 314 eE~r~~g~~SgLHIIIFDEiDAICKqRGS~~--g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGR 391 (744)
T KOG0741|consen 314 EEQRRLGANSGLHIIIFDEIDAICKQRGSMA--GSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGR 391 (744)
T ss_pred HHHHhhCccCCceEEEehhhHHHHHhcCCCC--CCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCc
Confidence 75543 34668999999999999986532 3234446899999999999988899999999999999999999 79
Q ss_pred CCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccC
Q 012655 335 ADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEG 414 (459)
Q Consensus 335 ~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G 414 (459)
+....++..|++..|.+|++...+.+...+.+. ...++.+||..+..
T Consensus 392 lEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~---------------------------------~dVdl~elA~lTKN 438 (744)
T KOG0741|consen 392 LEVQMEISLPDEKGRLQILKIHTKRMRENNKLS---------------------------------ADVDLKELAALTKN 438 (744)
T ss_pred eEEEEEEeCCCccCceEEEEhhhhhhhhcCCCC---------------------------------CCcCHHHHHHHhcC
Confidence 999999999999999999999998875433321 11248899999999
Q ss_pred CChHHHhchHHHHHHhhc-----------------CCCCCCHHHHHHHHHHH
Q 012655 415 LSGRSLRKLPFLAHAALA-----------------NPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 415 ~Sgr~L~~L~~~a~a~~~-----------------~~~~it~~d~~~Al~~~ 449 (459)
|||..|.-|+..|++.+- ....++.+||+.|+.+.
T Consensus 439 fSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dV 490 (744)
T KOG0741|consen 439 FSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDV 490 (744)
T ss_pred CchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhc
Confidence 999999999988833311 12358899999999854
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=2.2e-24 Score=211.60 Aligned_cols=153 Identities=19% Similarity=0.315 Sum_probs=130.0
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhh
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFV 271 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~il 271 (459)
..+++++||||||||||.+|+++|++++.++ +.+++.++.++|.|++++.++.+|..|........+||||
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---------i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---------IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCL 216 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---------EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 3489999999999999999999999998776 9999999999999999999999999998876556789999
Q ss_pred hhhhhHhHHHhhhhccCCCCCCchHHHH-HHHHHHHHhh------------cCCCCEEEEEecCCCCcccHHHhc--cCC
Q 012655 272 LIDEVESLAAARKAALSGSEPSDSIRVV-NALLTQMDKL------------KSSPNVIILTTSNITAAIDIAFVD--RAD 336 (459)
Q Consensus 272 lIDEid~l~~~r~~~ls~~e~~~~~~~~-~~ll~~l~~l------------~~~~~viIi~Ttn~~~~ld~al~~--R~~ 336 (459)
||||||.++..+.. .+.....+++ .+|++++|.+ .....++||+|||.++.||+++++ |||
T Consensus 217 FIDEIDA~~g~r~~----~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfD 292 (413)
T PLN00020 217 FINDLDAGAGRFGT----TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRME 292 (413)
T ss_pred EEehhhhcCCCCCC----CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCC
Confidence 99999999987742 1112223444 7888988753 235679999999999999999996 999
Q ss_pred eEEEeCCCCHHHHHHHHHHHHHH
Q 012655 337 IKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 337 ~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
..+ ..|+.++|.+|++.+++.
T Consensus 293 k~i--~lPd~e~R~eIL~~~~r~ 313 (413)
T PLN00020 293 KFY--WAPTREDRIGVVHGIFRD 313 (413)
T ss_pred cee--CCCCHHHHHHHHHHHhcc
Confidence 965 589999999999998886
No 35
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.92 E-value=5.1e-25 Score=247.75 Aligned_cols=203 Identities=14% Similarity=0.159 Sum_probs=157.1
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccc----------------------------
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW---------------------------- 243 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~---------------------------- 243 (459)
..++||||+||||||||.|||++|++.+.|| +.+.+.++...+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPF---------IsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPF---------ITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCce---------EEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3489999999999999999999999999887 777777666433
Q ss_pred -------------cchh--hHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh
Q 012655 244 -------------FSES--GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (459)
Q Consensus 244 -------------~~e~--~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~ 308 (459)
.+.+ ...++.+|+.|+. .+||||+|||||.+..+. .....++.|+..|++
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk-----~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg 1763 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKA-----MSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSR 1763 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHH-----CCCeEEEEEchhhcCCCc----------cceehHHHHHHHhcc
Confidence 1111 1236778888887 489999999999997641 111237888899987
Q ss_pred hc---CCCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHH
Q 012655 309 LK---SSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSIL 383 (459)
Q Consensus 309 l~---~~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 383 (459)
.. ...+++|||+||+|+.+|+|++ +|||+.++++.|+..+|.+++...+.. .|.- ...
T Consensus 1764 ~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t---kg~~----L~~---------- 1826 (2281)
T CHL00206 1764 DCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT---RGFH----LEK---------- 1826 (2281)
T ss_pred ccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh---cCCC----CCc----------
Confidence 53 3457999999999999999999 599999999999999999988754321 1110 000
Q ss_pred hhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHH
Q 012655 384 KEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARK 452 (459)
Q Consensus 384 ~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~ 452 (459)
+ ...+..+|+.|.||||+||..|+..| .|...++..++.+++..|+.+..-.
T Consensus 1827 -------~----------~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1827 -------K----------MFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred -------c----------cccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhh
Confidence 0 01267899999999999999999999 6667788899999999999877543
No 36
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.2e-26 Score=213.61 Aligned_cols=240 Identities=26% Similarity=0.362 Sum_probs=192.0
Q ss_pred hhhhhhhhhhHHHHHHHHHH----HHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 157 MWESLIYESGLKQRLLHYAA----SALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~----~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
.|+++.|.....+.+.+.+. ++.+|.+.|+.| +.+++||||||+|||.+|+++|..+++.+ +
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~-----Pkg~ll~GppGtGKTlla~~Vaa~mg~nf---------l 195 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKP-----PKGLLLYGPPGTGKTLLARAVAATMGVNF---------L 195 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCC-----CceeEEeCCCCCchhHHHHHHHHhcCCce---------E
Confidence 47778777777777777665 445677777776 89999999999999999999999998766 8
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+.+..+.+++.||+++.++++|..+++. .|||+|+||||....++.+....+ .....+.+-.|+++|+++...
T Consensus 196 ~v~ss~lv~kyiGEsaRlIRemf~yA~~~-----~pciifmdeiDAigGRr~se~Ts~-dreiqrTLMeLlnqmdgfd~l 269 (388)
T KOG0651|consen 196 KVVSSALVDKYIGESARLIRDMFRYAREV-----IPCIIFMDEIDAIGGRRFSEGTSS-DREIQRTLMELLNQMDGFDTL 269 (388)
T ss_pred EeeHhhhhhhhcccHHHHHHHHHHHHhhh-----CceEEeehhhhhhccEEeccccch-hHHHHHHHHHHHHhhccchhc
Confidence 89999999999999999999999999985 789999999999998873321111 122344555566777777777
Q ss_pred CCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
+++-+|+|+|+++.||++++ +|.|+.+.+|.|++..|..|++-..+.+..-|.+
T Consensus 270 ~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Gei------------------------ 325 (388)
T KOG0651|consen 270 HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEI------------------------ 325 (388)
T ss_pred ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccc------------------------
Confidence 88999999999999999999 7999999999999999999777655554222221
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKE 453 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~ 453 (459)
+...+-+.++||.|.++++.+..| .+....+..+-.+||..++++....-
T Consensus 326 -------------d~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~~k 377 (388)
T KOG0651|consen 326 -------------DDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQADAK 377 (388)
T ss_pred -------------cHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHHHHHH
Confidence 144666778999999999999888 66667778888999999987765443
No 37
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6e-24 Score=219.07 Aligned_cols=201 Identities=29% Similarity=0.360 Sum_probs=169.2
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchh
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVF 270 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~i 270 (459)
+.+++++|+|||||+|||.+++++|++.+..+ +.++++++++++.+++++.+++.|+.+... ..|.+
T Consensus 215 ~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~---------~~i~~peli~k~~gEte~~LR~~f~~a~k~----~~psi 281 (693)
T KOG0730|consen 215 IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFL---------FLINGPELISKFPGETESNLRKAFAEALKF----QVPSI 281 (693)
T ss_pred CCCCCCccccCCCCCChHHHHHHHHHHhCcee---------EecccHHHHHhcccchHHHHHHHHHHHhcc----CCCee
Confidence 34489999999999999999999999997555 999999999999999999999999999874 22999
Q ss_pred hhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhc-cCCeEEEeCCCCHHHH
Q 012655 271 VLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVD-RADIKAYVGPPTLQAR 349 (459)
Q Consensus 271 llIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~-R~~~~i~~~~P~~~~r 349 (459)
+||||+|.+.++|...- ....++..+++++++.+...++++|++++|++..||+++++ |||+.+.++.|+..+|
T Consensus 282 i~IdEld~l~p~r~~~~-----~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~R 356 (693)
T KOG0730|consen 282 IFIDELDALCPKREGAD-----DVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGR 356 (693)
T ss_pred EeHHhHhhhCCcccccc-----hHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhH
Confidence 99999999998774321 13579999999999999989999999999999999999995 9999999999999999
Q ss_pred HHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHH
Q 012655 350 YEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHA 429 (459)
Q Consensus 350 ~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a 429 (459)
.+|++...+.+... ....+..+|..|+||.|+||..++..|.-
T Consensus 357 ldIl~~l~k~~~~~-------------------------------------~~~~l~~iA~~thGyvGaDL~~l~~ea~~ 399 (693)
T KOG0730|consen 357 LDILRVLTKKMNLL-------------------------------------SDVDLEDIAVSTHGYVGADLAALCREASL 399 (693)
T ss_pred HHHHHHHHHhcCCc-------------------------------------chhhHHHHHHHccchhHHHHHHHHHHHHH
Confidence 99999999875210 01248899999999999999999988822
Q ss_pred hhcCCCCCCHHHHHHHHHHH
Q 012655 430 ALANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 430 ~~~~~~~it~~d~~~Al~~~ 449 (459)
....+ +.++|..|+...
T Consensus 400 ~~~r~---~~~~~~~A~~~i 416 (693)
T KOG0730|consen 400 QATRR---TLEIFQEALMGI 416 (693)
T ss_pred HHhhh---hHHHHHHHHhcC
Confidence 21111 667777776543
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=2.2e-23 Score=229.54 Aligned_cols=234 Identities=29% Similarity=0.401 Sum_probs=187.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHH----HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 157 MWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
.|++++|.+..++.+.+++..+ ..|...|+.+ ++++|||||||||||++++++|+.++.++ +
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~-----~~giLL~GppGtGKT~laraia~~~~~~~---------i 241 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEP-----PKGVLLYGPPGTGKTLLAKAVANEAGAYF---------I 241 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCC-----CceEEEECCCCCChHHHHHHHHHHhCCeE---------E
Confidence 5999999999999998887654 4555666665 89999999999999999999999997655 8
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++.++.+++.+++...+..+|+.+.. ..|++|||||+|.+...+.... .....++++.|++.++.+...
T Consensus 242 ~i~~~~i~~~~~g~~~~~l~~lf~~a~~-----~~p~il~iDEid~l~~~r~~~~----~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 242 SINGPEIMSKYYGESEERLREIFKEAEE-----NAPSIIFIDEIDAIAPKREEVT----GEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred EEecHHHhcccccHHHHHHHHHHHHHHh-----cCCcEEEeehhhhhcccccCCc----chHHHHHHHHHHHHhhccccC
Confidence 8999999999999988899999998876 4789999999999987764311 123467889999999999888
Q ss_pred CCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
+.++||++||.++.+|+++++ ||+..+.++.|+.++|.+|++....... ...
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~---------l~~----------------- 366 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP---------LAE----------------- 366 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC---------Ccc-----------------
Confidence 899999999999999999984 9999999999999999999996655420 000
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHh--h-------------------cCCCCCCHHHHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAA--L-------------------ANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~--~-------------------~~~~~it~~d~~~Al~~~ 449 (459)
...+..+++.+.||+|+++..++..|... . .....++.+||..|+...
T Consensus 367 -----------d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v 435 (733)
T TIGR01243 367 -----------DVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMV 435 (733)
T ss_pred -----------ccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhc
Confidence 11267889999999999999998877211 1 012346788998888754
Q ss_pred H
Q 012655 450 A 450 (459)
Q Consensus 450 ~ 450 (459)
.
T Consensus 436 ~ 436 (733)
T TIGR01243 436 E 436 (733)
T ss_pred c
Confidence 3
No 39
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-22 Score=220.64 Aligned_cols=223 Identities=29% Similarity=0.369 Sum_probs=184.9
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEE
Q 012655 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (459)
.--|+++.|.++++..|.+.+..++.+++. +.++.|.++++||+|||||||||..|+++|..+.... ...-++.-
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~-f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~----~kisffmr 335 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEF-FDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN----RKISFFMR 335 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhH-hhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc----cccchhhh
Confidence 345999999999999999999888877763 3335566699999999999999999999999985332 22333455
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCC
Q 012655 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (459)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~ 314 (459)
.+.+..++|+++..+..+.+|+.++. ..|.|+|+||||-|++.|.+ .+......++..||..|+++...+.
T Consensus 336 kgaD~lskwvgEaERqlrllFeeA~k-----~qPSIIffdeIdGlapvrSs----kqEqih~SIvSTLLaLmdGldsRgq 406 (1080)
T KOG0732|consen 336 KGADCLSKWVGEAERQLRLLFEEAQK-----TQPSIIFFDEIDGLAPVRSS----KQEQIHASIVSTLLALMDGLDSRGQ 406 (1080)
T ss_pred cCchhhccccCcHHHHHHHHHHHHhc-----cCceEEeccccccccccccc----hHHHhhhhHHHHHHHhccCCCCCCc
Confidence 67888999999999999999999997 49999999999999887732 2223446788999999999999999
Q ss_pred EEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhH
Q 012655 315 VIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDI 392 (459)
Q Consensus 315 viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 392 (459)
++||++||+++.+|++++ .|||+.++|+.|+.++|.+|+.....+-.. . +
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~--~--------------------------i 458 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEP--P--------------------------I 458 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCC--C--------------------------C
Confidence 999999999999999997 799999999999999999999887665310 0 0
Q ss_pred HhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 393 QEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 393 ~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
....+..+|+.|.|+-|+||+.||..|
T Consensus 459 --------~~~l~~~la~~t~gy~gaDlkaLCTeA 485 (1080)
T KOG0732|consen 459 --------SRELLLWLAEETSGYGGADLKALCTEA 485 (1080)
T ss_pred --------CHHHHHHHHHhccccchHHHHHHHHHH
Confidence 011377899999999999999999988
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.9e-21 Score=190.00 Aligned_cols=262 Identities=23% Similarity=0.316 Sum_probs=176.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
..++++|....+++++.+.......-..+. -| =++|++|||||||||++|+.||...|..+ -.+.
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~-ap-----fRNilfyGPPGTGKTm~ArelAr~SGlDY---------A~mT 416 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQ-AP-----FRNILFYGPPGTGKTMFARELARHSGLDY---------AIMT 416 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhccccccc-ch-----hhheeeeCCCCCCchHHHHHHHhhcCCce---------ehhc
Confidence 457888999999999988877644333322 22 27799999999999999999999998665 2233
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCE
Q 012655 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV 315 (459)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~v 315 (459)
+.++- ..-......+.++|+=+.. ....-+|||||.|.+.-.|.. ..+.......+|+||-.-.. ....+
T Consensus 417 GGDVA-PlG~qaVTkiH~lFDWakk----S~rGLllFIDEADAFLceRnk---tymSEaqRsaLNAlLfRTGd--qSrdi 486 (630)
T KOG0742|consen 417 GGDVA-PLGAQAVTKIHKLFDWAKK----SRRGLLLFIDEADAFLCERNK---TYMSEAQRSALNALLFRTGD--QSRDI 486 (630)
T ss_pred CCCcc-ccchHHHHHHHHHHHHHhh----cccceEEEehhhHHHHHHhch---hhhcHHHHHHHHHHHHHhcc--cccce
Confidence 33321 1112233567778876654 245678999999999887754 33334556677776643222 34468
Q ss_pred EEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccc-hHHHhhcCCchhHHh
Q 012655 316 IILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPN-FSILKEKLSNPDIQE 394 (459)
Q Consensus 316 iIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~ 394 (459)
+++.+||+|..+|.++-+|+|..++||.|..++|..++..|+.+.+..+..... ...+.. |.+....+. +..
T Consensus 487 vLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~----~~~~~~lfkk~sQ~i~---l~~ 559 (630)
T KOG0742|consen 487 VLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGK----PGKWSHLFKKESQRIK---LAG 559 (630)
T ss_pred EEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCC----CchhhHHHhhhhheee---ecc
Confidence 888899999999999999999999999999999999999999998755443221 111111 111111111 100
Q ss_pred hhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCC--CHHHHHHHHHHHHHHH
Q 012655 395 ADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGC--DPSKFLLTVIDTARKE 453 (459)
Q Consensus 395 ~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~i--t~~d~~~Al~~~~~~~ 453 (459)
......+.+.|+.++|||||.|.+|+.-.+|..-+...| |-.-|.+-+...+.++
T Consensus 560 ----~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~eH 616 (630)
T KOG0742|consen 560 ----FDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQEH 616 (630)
T ss_pred ----chHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 012345889999999999999999998887776655544 3334555555554443
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.82 E-value=5.1e-19 Score=171.75 Aligned_cols=182 Identities=18% Similarity=0.245 Sum_probs=135.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHH---HHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEE
Q 012655 157 MWESLIYESGLKQRLLHYAASALM---FAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~---~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (459)
..++++|.+++|+++.++..+... ..+.|..+. ....+++|+|||||||||+|+++|+.+... ...+...+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~--~~~~~vll~GppGtGKTtlA~~ia~~l~~~--~~~~~~~~v~ 79 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS--KQVLHMIFKGNPGTGKTTVARILGKLFKEM--NVLSKGHLIE 79 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCC--CCcceEEEEcCCCCCHHHHHHHHHHHHHhc--CcccCCceEE
Confidence 357899999999999988776543 233555432 123569999999999999999999987321 1234556788
Q ss_pred EccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCC
Q 012655 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (459)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~ 313 (459)
+++.++.+.|+++....+..+|..+. .++|||||++.|.. +++.......++.++..++.. ..
T Consensus 80 ~~~~~l~~~~~g~~~~~~~~~~~~a~--------~~VL~IDE~~~L~~-------~~~~~~~~~~i~~Ll~~~e~~--~~ 142 (261)
T TIGR02881 80 VERADLVGEYIGHTAQKTREVIKKAL--------GGVLFIDEAYSLAR-------GGEKDFGKEAIDTLVKGMEDN--RN 142 (261)
T ss_pred ecHHHhhhhhccchHHHHHHHHHhcc--------CCEEEEechhhhcc-------CCccchHHHHHHHHHHHHhcc--CC
Confidence 99999999999988877777776543 47999999999863 222233456778888887763 34
Q ss_pred CEEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 314 NVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 314 ~viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
.++++++++..+ .+++++.+||+..+.+++++.+++.+|++.++..
T Consensus 143 ~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 143 EFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 455555544322 2578999999999999999999999999999876
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.82 E-value=7.5e-19 Score=172.22 Aligned_cols=185 Identities=18% Similarity=0.188 Sum_probs=136.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHH---HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 156 GMWESLIYESGLKQRLLHYAASA---LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~---~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
.++++++|.+++|+++.+.+... ..+...|+.+ ...+.+++|+||||||||++|+++|+.+... ...+...++
T Consensus 20 ~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~--~~~~~~ill~G~pGtGKT~lAr~la~~~~~~--g~~~~~~~~ 95 (287)
T CHL00181 20 ILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTS--SNPGLHMSFTGSPGTGKTTVALKMADILYKL--GYIKKGHLL 95 (287)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCceEEEECCCCCCHHHHHHHHHHHHHHc--CCCCCCceE
Confidence 46778999999999988876542 2344566654 2235679999999999999999999987421 112344578
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
++++.++.+.+++++...+..++.++ ..++|||||++.+...+ ++......+++.|+..|+.. .
T Consensus 96 ~v~~~~l~~~~~g~~~~~~~~~l~~a--------~ggVLfIDE~~~l~~~~------~~~~~~~e~~~~L~~~me~~--~ 159 (287)
T CHL00181 96 TVTRDDLVGQYIGHTAPKTKEVLKKA--------MGGVLFIDEAYYLYKPD------NERDYGSEAIEILLQVMENQ--R 159 (287)
T ss_pred EecHHHHHHHHhccchHHHHHHHHHc--------cCCEEEEEccchhccCC------CccchHHHHHHHHHHHHhcC--C
Confidence 99988888888887766666666553 34799999999986421 12234467788888888763 3
Q ss_pred CCEEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 313 PNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 313 ~~viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
.+++||++++... .++++|.+||+..+.|++++.+++.+|+..++++.
T Consensus 160 ~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 160 DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 5567777665322 23689999999999999999999999999999874
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.80 E-value=3.1e-19 Score=154.10 Aligned_cols=130 Identities=35% Similarity=0.546 Sum_probs=111.0
Q ss_pred EEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhh
Q 012655 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEV 276 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEi 276 (459)
|||+||||||||++++.+|+.++.++ +.+++..+.+.+.++....+..+|+++... ..++|++|||+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~---------~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPF---------IEIDGSELISSYAGDSEQKIRDFFKKAKKS----AKPCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEE---------EEEETTHHHTSSTTHHHHHHHHHHHHHHHT----STSEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhccccc---------cccccccccccccccccccccccccccccc----ccceeeeeccc
Confidence 68999999999999999999998766 999999998888888889999999998763 13899999999
Q ss_pred HhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC-CCEEEEEecCCCCcccHHHh-ccCCeEEEeCC
Q 012655 277 ESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS-PNVIILTTSNITAAIDIAFV-DRADIKAYVGP 343 (459)
Q Consensus 277 d~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~-~~viIi~Ttn~~~~ld~al~-~R~~~~i~~~~ 343 (459)
|.+.... ..........+++.++..++..... .++++|+|+|.++.++++++ +||+..+++|.
T Consensus 68 d~l~~~~----~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 68 DKLFPKS----QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp GGTSHHC----STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred hhccccc----ccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 9998876 2233345578889999999987665 56999999999999999999 99999999873
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=1.4e-17 Score=163.25 Aligned_cols=185 Identities=18% Similarity=0.182 Sum_probs=137.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH---HHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 156 GMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
.+.++++|.+++|+++.+.+.. ...+.+.|+.+. ..+.+++|+||||||||++|+++|+.+.... ......++
T Consensus 19 ~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~--~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g--~~~~~~~v 94 (284)
T TIGR02880 19 QLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA--APTLHMSFTGNPGTGKTTVALRMAQILHRLG--YVRKGHLV 94 (284)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--CCCceEEEEcCCCCCHHHHHHHHHHHHHHcC--CcccceEE
Confidence 3445799999999998876654 234555676541 2355799999999999999999999885321 12234578
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++.++.+.+++.+...+..+|+++ ..++|||||++.+...+ .+......+++.|+..|+. ..
T Consensus 95 ~v~~~~l~~~~~g~~~~~~~~~~~~a--------~~gvL~iDEi~~L~~~~------~~~~~~~~~~~~Ll~~le~--~~ 158 (284)
T TIGR02880 95 SVTRDDLVGQYIGHTAPKTKEILKRA--------MGGVLFIDEAYYLYRPD------NERDYGQEAIEILLQVMEN--QR 158 (284)
T ss_pred EecHHHHhHhhcccchHHHHHHHHHc--------cCcEEEEechhhhccCC------CccchHHHHHHHHHHHHhc--CC
Confidence 99998888888888776666666654 34799999999885421 1223446778888888875 33
Q ss_pred CCEEEEEecCCC--Cc---ccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 313 PNVIILTTSNIT--AA---IDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 313 ~~viIi~Ttn~~--~~---ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
.+++||++++.. +. ++++|.+||+..+.+|+++.+++.+|++.++++.
T Consensus 159 ~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 159 DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 566777766543 22 3899999999999999999999999999999884
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.75 E-value=4.3e-18 Score=157.50 Aligned_cols=188 Identities=21% Similarity=0.266 Sum_probs=121.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.+++++|+++++..+.-++.....-. ..+ .+++||||||+||||||+.||++++..+ ...++
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~-~~l--------~h~lf~GPPG~GKTTLA~IIA~e~~~~~---------~~~sg 83 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRG-EAL--------DHMLFYGPPGLGKTTLARIIANELGVNF---------KITSG 83 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTT-S-----------EEEEESSTTSSHHHHHHHHHHHCT--E---------EEEEC
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcC-CCc--------ceEEEECCCccchhHHHHHHHhccCCCe---------Eeccc
Confidence 38899999999999877766532111 112 3599999999999999999999998765 44555
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-----C
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-----S 311 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-----~ 311 (459)
..+ .. ...+..++... ....|||||||+++... ....|+..|+... .
T Consensus 84 ~~i-----~k-~~dl~~il~~l-------~~~~ILFIDEIHRlnk~---------------~qe~LlpamEd~~idiiiG 135 (233)
T PF05496_consen 84 PAI-----EK-AGDLAAILTNL-------KEGDILFIDEIHRLNKA---------------QQEILLPAMEDGKIDIIIG 135 (233)
T ss_dssp CC-------S-CHHHHHHHHT---------TT-EEEECTCCC--HH---------------HHHHHHHHHHCSEEEEEBS
T ss_pred hhh-----hh-HHHHHHHHHhc-------CCCcEEEEechhhccHH---------------HHHHHHHHhccCeEEEEec
Confidence 332 11 12233333322 25579999999998763 4566777777432 1
Q ss_pred -----------CCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccch
Q 012655 312 -----------SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNF 380 (459)
Q Consensus 312 -----------~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~ 380 (459)
-+++.+|++|+....+...+++||+....+..++.++..+|++.....+.
T Consensus 136 ~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~------------------- 196 (233)
T PF05496_consen 136 KGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN------------------- 196 (233)
T ss_dssp SSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-------------------
T ss_pred cccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-------------------
Confidence 13578899999999999999999999999999999999999987666531
Q ss_pred HHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 381 SILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 381 ~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
.++. .....+||.+|.| ++|-..+|...+
T Consensus 197 ---------i~i~--------~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 197 ---------IEID--------EDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp ----------EE---------HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ---------CCcC--------HHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 0111 2247799999999 777777776555
No 46
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.1e-17 Score=154.63 Aligned_cols=210 Identities=21% Similarity=0.273 Sum_probs=150.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|++++|++|.-++.++....+ -+ .++||+||||.||||||..+|++++..+ -...+
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e-~l--------DHvLl~GPPGlGKTTLA~IIA~Emgvn~---------k~tsG 85 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGE-AL--------DHVLLFGPPGLGKTTLAHIIANELGVNL---------KITSG 85 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCC-Cc--------CeEEeeCCCCCcHHHHHHHHHHHhcCCe---------Eeccc
Confidence 489999999999999999887554332 23 4599999999999999999999998654 22222
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc------
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK------ 310 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~------ 310 (459)
..+ +....+..++... ....|+|||||+++.... -.-|...|+.++
T Consensus 86 p~l------eK~gDlaaiLt~L-------e~~DVLFIDEIHrl~~~v---------------EE~LYpaMEDf~lDI~IG 137 (332)
T COG2255 86 PAL------EKPGDLAAILTNL-------EEGDVLFIDEIHRLSPAV---------------EEVLYPAMEDFRLDIIIG 137 (332)
T ss_pred ccc------cChhhHHHHHhcC-------CcCCeEEEehhhhcChhH---------------HHHhhhhhhheeEEEEEc
Confidence 222 1122233333322 356899999999987632 233444555332
Q ss_pred ----------CCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccch
Q 012655 311 ----------SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNF 380 (459)
Q Consensus 311 ----------~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~ 380 (459)
+-+.+.+|++|.+...+...+++||+....+..++.++..+|+.+....+. -
T Consensus 138 ~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i----------------- 199 (332)
T COG2255 138 KGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-I----------------- 199 (332)
T ss_pred cCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-C-----------------
Confidence 124578899999999999999999999999999999999999998876541 0
Q ss_pred HHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHH
Q 012655 381 SILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 381 ~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~ 449 (459)
++. .....+||+++.| ++|--.+|..+. +|...+...++.+-..+|+...
T Consensus 200 ----------~i~--------~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 200 ----------EID--------EEAALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred ----------CCC--------hHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 111 1236789999999 666666666666 7777788888887777777654
No 47
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.4e-17 Score=167.71 Aligned_cols=235 Identities=20% Similarity=0.207 Sum_probs=171.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 160 ~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+++....+|+...++...+ +-.+..|+|+||+|||||.|+++++.++..+. .+.+..++|+.+
T Consensus 409 d~i~~~s~kke~~n~~~sp------------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~-----~~hv~~v~Cs~l 471 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSP------------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDL-----IAHVEIVSCSTL 471 (952)
T ss_pred ceeecchhhhhhhhhhccc------------ccccccEEEeCCCCCCHhHHHHHHHHHhcccc-----ceEEEEEechhc
Confidence 4555555665555433222 22256799999999999999999999997544 566788899888
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHH-hh-cCCCCEEE
Q 012655 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD-KL-KSSPNVII 317 (459)
Q Consensus 240 ~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~-~l-~~~~~viI 317 (459)
....+....+.++.+|..+.. .+|.++++|++|.++... .-.+++.+.....++.+++++- .+ +.+..+.+
T Consensus 472 ~~~~~e~iQk~l~~vfse~~~-----~~PSiIvLDdld~l~~~s--~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~ 544 (952)
T KOG0735|consen 472 DGSSLEKIQKFLNNVFSEALW-----YAPSIIVLDDLDCLASAS--SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAV 544 (952)
T ss_pred cchhHHHHHHHHHHHHHHHHh-----hCCcEEEEcchhhhhccC--cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEE
Confidence 766666667778888888776 499999999999998721 1112222333444555554433 22 34455789
Q ss_pred EEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhh
Q 012655 318 LTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEA 395 (459)
Q Consensus 318 i~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 395 (459)
|+|.+..+.+++.+. .+|+.++.+++|...+|.+||+..+++....
T Consensus 545 Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~-------------------------------- 592 (952)
T KOG0735|consen 545 IATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSD-------------------------------- 592 (952)
T ss_pred EEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhh--------------------------------
Confidence 999999999998887 5899999999999999999999999985210
Q ss_pred hhhhHHHHHHHHHHHHccCCChHHHhchHHHH-HHhh-----cCCCCCCHHHHHHHHHHHHHHHh
Q 012655 396 DRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA-HAAL-----ANPNGCDPSKFLLTVIDTARKER 454 (459)
Q Consensus 396 ~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a-~a~~-----~~~~~it~~d~~~Al~~~~~~~~ 454 (459)
.....|.-+|..|+||..+||..++.+| ++++ .+..-+|.++|.++|+.++....
T Consensus 593 ----~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aL 653 (952)
T KOG0735|consen 593 ----ITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLAL 653 (952)
T ss_pred ----hhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHh
Confidence 1122355599999999999999999999 5544 23447899999999998876543
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.73 E-value=2.8e-16 Score=155.92 Aligned_cols=209 Identities=21% Similarity=0.246 Sum_probs=137.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|++++++.|..++........ . ..+++|+||||||||++|+++|+.++..+ ..+.+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~-~--------~~~~ll~Gp~G~GKT~la~~ia~~~~~~~---------~~~~~ 63 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQE-A--------LDHLLLYGPPGLGKTTLAHIIANEMGVNL---------KITSG 63 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCC-C--------CCeEEEECCCCCCHHHHHHHHHHHhCCCE---------EEecc
Confidence 489999999999998888754322111 1 24599999999999999999999987543 23332
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc------
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK------ 310 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~------ 310 (459)
..... ...+...+.. ...+.+++|||++.+.... .+.++..++...
T Consensus 64 ~~~~~------~~~l~~~l~~-------~~~~~vl~iDEi~~l~~~~---------------~e~l~~~~~~~~~~~v~~ 115 (305)
T TIGR00635 64 PALEK------PGDLAAILTN-------LEEGDVLFIDEIHRLSPAV---------------EELLYPAMEDFRLDIVIG 115 (305)
T ss_pred chhcC------chhHHHHHHh-------cccCCEEEEehHhhhCHHH---------------HHHhhHHHhhhheeeeec
Confidence 22110 0111111111 1356899999999886532 223444443221
Q ss_pred ----------CCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccch
Q 012655 311 ----------SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNF 380 (459)
Q Consensus 311 ----------~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~ 380 (459)
....++++++||.+..+++++++||+..+.+++++.+++.++++...... +.
T Consensus 116 ~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~---~~--------------- 177 (305)
T TIGR00635 116 KGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL---NV--------------- 177 (305)
T ss_pred cCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh---CC---------------
Confidence 11237788888888899999999999999999999999999998877642 11
Q ss_pred HHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHH
Q 012655 381 SILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVID 448 (459)
Q Consensus 381 ~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~ 448 (459)
.+ ....+..+++.|.| ++|.+..++..+ .|...+...++.+.+..++..
T Consensus 178 ----------~~--------~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 178 ----------EI--------EPEAALEIARRSRG-TPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred ----------Cc--------CHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 00 01236678888888 445555565554 333344566888887777765
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71 E-value=5.1e-16 Score=155.71 Aligned_cols=210 Identities=20% Similarity=0.243 Sum_probs=141.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.++.++.+..++..... .+-. ..+++|+||||||||++|+++|+.++..+ ..+++
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~---~~~~------~~~~ll~GppG~GKT~la~~ia~~l~~~~---------~~~~~ 84 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKK---RGEA------LDHVLLYGPPGLGKTTLANIIANEMGVNI---------RITSG 84 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHh---cCCC------CCcEEEECCCCccHHHHHHHHHHHhCCCe---------EEEec
Confidence 489999999999998887754221 1211 35699999999999999999999997543 33333
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc------
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK------ 310 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~------ 310 (459)
..+. ....+..++.. ...+.+++|||++.+.... .+.+...++...
T Consensus 85 ~~~~------~~~~l~~~l~~-------l~~~~vl~IDEi~~l~~~~---------------~e~l~~~~e~~~~~~~l~ 136 (328)
T PRK00080 85 PALE------KPGDLAAILTN-------LEEGDVLFIDEIHRLSPVV---------------EEILYPAMEDFRLDIMIG 136 (328)
T ss_pred cccc------ChHHHHHHHHh-------cccCCEEEEecHhhcchHH---------------HHHHHHHHHhcceeeeec
Confidence 3221 11122222222 2356899999999885422 122334443221
Q ss_pred ----------CCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccch
Q 012655 311 ----------SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNF 380 (459)
Q Consensus 311 ----------~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~ 380 (459)
.-+.+.+|++||....++.++++||+..+.+++|+.+++.+|++...... +.
T Consensus 137 ~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~---~~--------------- 198 (328)
T PRK00080 137 KGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL---GV--------------- 198 (328)
T ss_pred cCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc---CC---------------
Confidence 11336788888888999999999999999999999999999999877763 11
Q ss_pred HHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHH
Q 012655 381 SILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 381 ~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~ 449 (459)
.+. ...+..|++.|.| ++|.+..++..+ .+...+...++.+++..++...
T Consensus 199 ----------~~~--------~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 199 ----------EID--------EEGALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred ----------CcC--------HHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 000 1237788899998 556666666655 3333455678888888887543
No 50
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.69 E-value=5.1e-16 Score=160.15 Aligned_cols=141 Identities=21% Similarity=0.374 Sum_probs=98.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhH-HHHHHHHHHHHHHHhcccchhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGK-LVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~-~v~~~f~~~~~~~~~~~~~~illI 273 (459)
..++||||+|+|||+|++++++++... .++..++++++.++...+...... .+..+.+.. ....+|+|
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~----~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~dlLii 205 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN----NPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-------RSVDLLLI 205 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh----CCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-------HhCCEEEE
Confidence 348999999999999999999988432 234566788877665433222111 111111111 24579999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccCC--eEEEeCCCCHHH
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRAD--IKAYVGPPTLQA 348 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~~--~~i~~~~P~~~~ 348 (459)
||++.+..+. .....++..++.+...++.+|++++..+..+ ++.+.+||. ..+.+++|+.++
T Consensus 206 DDi~~l~~~~-------------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 206 DDIQFLAGKE-------------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLET 272 (405)
T ss_pred ehhhhhcCCH-------------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHH
Confidence 9999875432 2345677777776666666777777666554 678889984 689999999999
Q ss_pred HHHHHHHHHHH
Q 012655 349 RYEILRSCLQE 359 (459)
Q Consensus 349 r~~Il~~~l~~ 359 (459)
|.+|++..++.
T Consensus 273 r~~il~~~~~~ 283 (405)
T TIGR00362 273 RLAILQKKAEE 283 (405)
T ss_pred HHHHHHHHHHH
Confidence 99999998887
No 51
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.68 E-value=1e-15 Score=159.97 Aligned_cols=196 Identities=19% Similarity=0.231 Sum_probs=126.7
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (459)
..++||||+|+|||+|++++++++... .++..++++++.++...+..........-|... .....+|+||
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~----~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~------~~~~dlLiiD 218 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEK----NPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEK------YRSVDVLLID 218 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHH------HhcCCEEEEe
Confidence 349999999999999999999998532 245567888887765544332211111111111 1256799999
Q ss_pred hhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCc---ccHHHhccCC--eEEEeCCCCHHHH
Q 012655 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---IDIAFVDRAD--IKAYVGPPTLQAR 349 (459)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~---ld~al~~R~~--~~i~~~~P~~~~r 349 (459)
|++.+..+. .....++..++.+...++.+|++++..+.. +++.+.+||. ..+.+.+|+.++|
T Consensus 219 Di~~l~~~~-------------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r 285 (450)
T PRK00149 219 DIQFLAGKE-------------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETR 285 (450)
T ss_pred hhhhhcCCH-------------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHH
Confidence 999885432 234567777777766666777777776655 5788999984 6899999999999
Q ss_pred HHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHH
Q 012655 350 YEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHA 429 (459)
Q Consensus 350 ~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a 429 (459)
.+|++..+... +. . +. ...+..||+.+.| +.|.|..++....+
T Consensus 286 ~~il~~~~~~~---~~----------~---------------l~--------~e~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 286 IAILKKKAEEE---GI----------D---------------LP--------DEVLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred HHHHHHHHHHc---CC----------C---------------CC--------HHHHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 99999988862 11 0 00 1125566666665 55655555444422
Q ss_pred h-hcCCCCCCHHHHHHHHHHHH
Q 012655 430 A-LANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 430 ~-~~~~~~it~~d~~~Al~~~~ 450 (459)
. ......+|.+.+.+++....
T Consensus 329 ~~~~~~~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 329 YASLTGKPITLELAKEALKDLL 350 (450)
T ss_pred HHHhhCCCCCHHHHHHHHHHhh
Confidence 2 12334566666666666543
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.67 E-value=9.1e-16 Score=151.20 Aligned_cols=127 Identities=22% Similarity=0.384 Sum_probs=99.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDE 275 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDE 275 (459)
.++|||||||||||+|+.||+..+..| ..+++.. .+-+.++.+++.++..... ....||||||
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f---------~~~sAv~-------~gvkdlr~i~e~a~~~~~~-gr~tiLflDE 112 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAF---------EALSAVT-------SGVKDLREIIEEARKNRLL-GRRTILFLDE 112 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCce---------EEecccc-------ccHHHHHHHHHHHHHHHhc-CCceEEEEeh
Confidence 399999999999999999999998766 6676633 2447889999999776543 4468999999
Q ss_pred hHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEec--CCCCcccHHHhccCCeEEEeCCCCHHHHHHHH
Q 012655 276 VESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTS--NITAAIDIAFVDRADIKAYVGPPTLQARYEIL 353 (459)
Q Consensus 276 id~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Tt--n~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il 353 (459)
|+++....+ ..||-.+ .++.+++|++| |+...+++++++|+ .++.+.+.+.++..+++
T Consensus 113 IHRfnK~QQ---------------D~lLp~v----E~G~iilIGATTENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l 172 (436)
T COG2256 113 IHRFNKAQQ---------------DALLPHV----ENGTIILIGATTENPSFELNPALLSRA-RVFELKPLSSEDIKKLL 172 (436)
T ss_pred hhhcChhhh---------------hhhhhhh----cCCeEEEEeccCCCCCeeecHHHhhhh-heeeeecCCHHHHHHHH
Confidence 999977543 4455554 34777777654 45567899999999 88889999999999999
Q ss_pred HHHHHH
Q 012655 354 RSCLQE 359 (459)
Q Consensus 354 ~~~l~~ 359 (459)
++.+..
T Consensus 173 ~ra~~~ 178 (436)
T COG2256 173 KRALLD 178 (436)
T ss_pred HHHHhh
Confidence 985543
No 53
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=4.1e-15 Score=152.94 Aligned_cols=165 Identities=17% Similarity=0.233 Sum_probs=113.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC------C----
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR------Y---- 226 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~------~---- 226 (459)
.|++++|++.+.+.|...+... .+ +..+||+||+||||||+|+.+|+.+....... .
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~------ri-------~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSG------KI-------GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 4999999999998887776531 11 23489999999999999999999986531100 0
Q ss_pred -----CcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 227 -----PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 227 -----~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
....++++++.+- .....++.+.+.+.... ......|++|||+|.+.. ..+++
T Consensus 83 ~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p-~~g~~KV~IIDEah~Ls~---------------~A~NA 140 (484)
T PRK14956 83 EITKGISSDVLEIDAASN------RGIENIRELRDNVKFAP-MGGKYKVYIIDEVHMLTD---------------QSFNA 140 (484)
T ss_pred HHHccCCccceeechhhc------ccHHHHHHHHHHHHhhh-hcCCCEEEEEechhhcCH---------------HHHHH
Confidence 0112334433211 11234455544443321 123567999999998854 46788
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
||+.|+. +..++++|.+|+.+..+.+++++|| ..+.|.+++.++..+.++..+..
T Consensus 141 LLKtLEE--Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 141 LLKTLEE--PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred HHHHhhc--CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHH
Confidence 9988876 4467777777777899999999999 67888888888888777776664
No 54
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.66 E-value=1.3e-15 Score=168.55 Aligned_cols=166 Identities=25% Similarity=0.343 Sum_probs=116.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
++++|.+++|+++.+++....... +. .+..++|+||||||||++|+++|+.++.++ +.++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~--~~------~~~~lll~GppG~GKT~lAk~iA~~l~~~~---------~~i~~~~ 382 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG--KM------KGPILCLVGPPGVGKTSLGKSIAKALNRKF---------VRFSLGG 382 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc--CC------CCceEEEECCCCCCHHHHHHHHHHHhcCCe---------EEEeCCC
Confidence 357788999999999877543222 11 145799999999999999999999998776 4443322
Q ss_pred cc---------ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh-
Q 012655 239 LF---------SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK- 308 (459)
Q Consensus 239 l~---------~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~- 308 (459)
+. ..|.+.....+...|..+.. ...|++|||||.+..... + ...++|+..|+.
T Consensus 383 ~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~------~~~villDEidk~~~~~~-----~------~~~~aLl~~ld~~ 445 (775)
T TIGR00763 383 VRDEAEIRGHRRTYVGAMPGRIIQGLKKAKT------KNPLFLLDEIDKIGSSFR-----G------DPASALLEVLDPE 445 (775)
T ss_pred cccHHHHcCCCCceeCCCCchHHHHHHHhCc------CCCEEEEechhhcCCccC-----C------CHHHHHHHhcCHH
Confidence 21 23444443344444444322 334899999999975321 1 124566666653
Q ss_pred ----hc--------CCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 309 ----LK--------SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 309 ----l~--------~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
+. ..+++++|+|+|..+.+++++++|| ..+.++.|+.+++.+|++.++..
T Consensus 446 ~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~ 507 (775)
T TIGR00763 446 QNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIP 507 (775)
T ss_pred hcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHH
Confidence 11 1257899999999999999999999 57899999999999999988743
No 55
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.4e-16 Score=155.21 Aligned_cols=177 Identities=27% Similarity=0.384 Sum_probs=128.0
Q ss_pred hhhhhhhhhhhHHHHHH----HHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceE
Q 012655 156 GMWESLIYESGLKQRLL----HYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~----~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (459)
..|+.++-+.++|+.+. +++.....|.+.|.. |.|+.|||||||||||+++.|+|+.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGka-----wKRGYLLYGPPGTGKSS~IaAmAn~L~ydI--------- 263 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKA-----WKRGYLLYGPPGTGKSSFIAAMANYLNYDI--------- 263 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcc-----hhccceeeCCCCCCHHHHHHHHHhhcCCce---------
Confidence 57889998888777655 555666778877754 899999999999999999999999998654
Q ss_pred EEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccC---CCCCCchHHHHHHHHHHHHh
Q 012655 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALS---GSEPSDSIRVVNALLTQMDK 308 (459)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls---~~e~~~~~~~~~~ll~~l~~ 308 (459)
+.++-.+.. .... ++.+ +......+||+|.+||.-..-+..... +.+...+.-.+..||..+|+
T Consensus 264 ydLeLt~v~-----~n~d-Lr~L-------L~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG 330 (457)
T KOG0743|consen 264 YDLELTEVK-----LDSD-LRHL-------LLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG 330 (457)
T ss_pred EEeeecccc-----CcHH-HHHH-------HHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcc
Confidence 333332221 1111 3332 223346689999999986554332211 11111234567789999999
Q ss_pred hcCCC--CEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 309 LKSSP--NVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 309 l~~~~--~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
+-... --|||.|||..+.||+|++ +|+|.+|+++.-+.++-..++++++.-
T Consensus 331 lwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 331 LWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred ccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 86544 5788889999999999999 499999999999999988888888764
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=4.7e-15 Score=158.02 Aligned_cols=165 Identities=21% Similarity=0.280 Sum_probs=115.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCc--------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ-------- 228 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~-------- 228 (459)
.|++++|++.+++.|.+++.. ..+ ...+||+||+|+||||+++.+|+.+..........
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~------gRL-------~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDG------GRL-------HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhc------CCC-------CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 499999999999999887642 111 24579999999999999999999986432100001
Q ss_pred -------ceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 229 -------CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 229 -------~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
..+++++..+- .....++.+.+.+.... ......|+||||+|.|.. ...|.
T Consensus 81 ~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P-~~gr~KVIIIDEah~LT~---------------~A~NA 138 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAP-VDARFKVYMIDEVHMLTN---------------HAFNA 138 (830)
T ss_pred HHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhcc-ccCCceEEEEeChhhCCH---------------HHHHH
Confidence 12444444321 11233444444433211 123567999999998854 45788
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
||+.|+. ...+++||.+||.+..|...+++|| ..+.|..++.++..+.|+..++.
T Consensus 139 LLKtLEE--PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~ 193 (830)
T PRK07003 139 MLKTLEE--PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGE 193 (830)
T ss_pred HHHHHHh--cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHH
Confidence 9998876 3456777777777888989999999 88899999999998888887765
No 57
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=3.4e-15 Score=154.93 Aligned_cols=307 Identities=16% Similarity=0.172 Sum_probs=168.1
Q ss_pred HHHHHHHhcC-CccCCCCCCCCCCCchhhhccceEEEeeCCCCcccccccccccccceeEEEecCCCCCCccccCC-CCc
Q 012655 64 AVERMLEKRS-LSYVDGPIPIPIDDPFLVENVQRICVSDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGD-GQL 141 (459)
Q Consensus 64 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ 141 (459)
....|++... ..++++.+.+...+.|...|++. .....-........+....+++.. ....+....... ...
T Consensus 17 ~~~~w~~~l~~~~~~~~~~~l~~p~~f~~~~i~~-----~~~~~i~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~ 90 (440)
T PRK14088 17 SWELWFSSFDVKSIEGNKVVFSVGNLFIKEWLEK-----KYGSVLSKAVKEVLGKDATFEITY-EAFEPHSSYSEPLVKK 90 (440)
T ss_pred HHHHHHhhCeeeEeeCCEEEEEeCCHHHHHHHHH-----HHHHHHHHHHHHHhCCCceEEEEe-CCCCccccccCCcccc
Confidence 4578999877 56777888888999999988862 111100111111111122222211 111110000000 000
Q ss_pred ccccccccCccccchhhhhhhhhhhHHHHHHHHHHHHHHHHh-cCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 142 SSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAE-KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 142 ~~~~~~~lP~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~-~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
... .-........|++++..+.-........ .+.. .|. ...++||||+|+|||+|++++++.+..
T Consensus 91 ~~~---~~~~l~~~~tFdnFv~g~~n~~a~~~~~----~~~~~~~~-------~n~l~lyG~~G~GKTHLl~ai~~~l~~ 156 (440)
T PRK14088 91 RAV---LLTPLNPDYTFENFVVGPGNSFAYHAAL----EVAKNPGR-------YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_pred ccc---ccCCCCCCCcccccccCCchHHHHHHHH----HHHhCcCC-------CCeEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 000 0112334456888884333222211111 1111 111 123999999999999999999998742
Q ss_pred cccCCCCcceEEEEccccccccccchhh-HHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHH
Q 012655 221 RFSSRYPQCQLVEVNAHSLFSKWFSESG-KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299 (459)
Q Consensus 221 ~~~~~~~~~~~i~i~~~~l~~~~~~e~~-~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~ 299 (459)
. .++..++++++.++...+..... ..+.......+ ..+.+|+|||++.+.... ...
T Consensus 157 ~----~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~------~~~dvLlIDDi~~l~~~~-------------~~q 213 (440)
T PRK14088 157 N----EPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYR------KKVDVLLIDDVQFLIGKT-------------GVQ 213 (440)
T ss_pred h----CCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHH------hcCCEEEEechhhhcCcH-------------HHH
Confidence 2 24456678888776544322111 11111111111 257899999999875421 234
Q ss_pred HHHHHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccC--CeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccC
Q 012655 300 NALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQ 374 (459)
Q Consensus 300 ~~ll~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~--~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~ 374 (459)
..++..++.+...++.+|+++.+.|..+ .+.+.+|| +..+.+.+|+.+.|..|++..+... +.
T Consensus 214 ~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~---~~--------- 281 (440)
T PRK14088 214 TELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE---HG--------- 281 (440)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc---CC---------
Confidence 5577777777666777777776666654 56788887 5788999999999999999887652 11
Q ss_pred CcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHH-hhcCCCCCCHHHHHHHHHHHH
Q 012655 375 SMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHA-ALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 375 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a-~~~~~~~it~~d~~~Al~~~~ 450 (459)
.+ . ...+..||+.+.| +.|.|..++....+ .......+|.+...+++.+..
T Consensus 282 -~l---------------~--------~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 282 -EL---------------P--------EEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDFI 333 (440)
T ss_pred -CC---------------C--------HHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 00 0 1125566666665 56666665544422 122345567766666666553
No 58
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.4e-15 Score=157.54 Aligned_cols=202 Identities=22% Similarity=0.285 Sum_probs=160.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
+-.+||||+||||||++++++|++++.++ ++++|.++.....+..+......|.+++.. .|+|+|+
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~---------~evdc~el~~~s~~~~etkl~~~f~~a~~~-----~pavifl 496 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHL---------LEVDCYELVAESASHTETKLQAIFSRARRC-----SPAVLFL 496 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCce---------EeccHHHHhhcccchhHHHHHHHHHHHhhc-----CceEEEE
Confidence 45699999999999999999999999887 999999998877777788888999998874 8999999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHH---hhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHH
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMD---KLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARY 350 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~---~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~ 350 (459)
-++|.+.-.+. + ..+.+++..+-.++. ...+.+.+++++|++..+.+...+++-|-..+.++.|++++|.
T Consensus 497 ~~~dvl~id~d----g---ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl 569 (953)
T KOG0736|consen 497 RNLDVLGIDQD----G---GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRL 569 (953)
T ss_pred eccceeeecCC----C---chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHH
Confidence 99998874332 1 344555555544444 2235678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH-HH
Q 012655 351 EILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA-HA 429 (459)
Q Consensus 351 ~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a-~a 429 (459)
+|++.++..+.- +....+..+|++|.|||-++|.+++..+ .+
T Consensus 570 ~iLq~y~~~~~~-------------------------------------n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~ 612 (953)
T KOG0736|consen 570 EILQWYLNHLPL-------------------------------------NQDVNLKQLARKTSGFSFGDLEALVAHSSLA 612 (953)
T ss_pred HHHHHHHhcccc-------------------------------------chHHHHHHHHHhcCCCCHHHHHHHhcCchHH
Confidence 999999987521 1123577899999999999999987554 11
Q ss_pred h---h------------------cCCCCCCHHHHHHHHHHHHHHH
Q 012655 430 A---L------------------ANPNGCDPSKFLLTVIDTARKE 453 (459)
Q Consensus 430 ~---~------------------~~~~~it~~d~~~Al~~~~~~~ 453 (459)
. . .....++.+||.+|+.+..++-
T Consensus 613 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~f 657 (953)
T KOG0736|consen 613 AKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEF 657 (953)
T ss_pred HHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhh
Confidence 1 1 1124688999999999876653
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.2e-15 Score=155.79 Aligned_cols=165 Identities=20% Similarity=0.271 Sum_probs=115.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccc----c-------CC
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF----S-------SR 225 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~----~-------~~ 225 (459)
.|++++|++.+++.|.+.+... .+ +..+||+||+|+||||+++.+|+.+...- . ..
T Consensus 14 tFddVIGQe~vv~~L~~al~~g------RL-------pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~ 80 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQ------RL-------HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ 80 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhC------CC-------ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc
Confidence 5999999999999998887641 11 24589999999999999999999996410 0 00
Q ss_pred CCc---------ceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchH
Q 012655 226 YPQ---------CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSI 296 (459)
Q Consensus 226 ~~~---------~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~ 296 (459)
... ..+++++..+- .....++.+.+.+.... ......|++|||+|.|..
T Consensus 81 C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P-~~gr~KViIIDEah~Ls~--------------- 138 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAP-TAGRFKVYMIDEVHMLTN--------------- 138 (700)
T ss_pred cHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhch-hcCCceEEEEEChHhcCH---------------
Confidence 001 13444444321 11234455554443221 124568999999998854
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 297 RVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 297 ~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
...|.||+.|+. ..+++++|.+||.+..+.+.+++|| ..+.|..++.++..+.++..+.+
T Consensus 139 ~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~ 198 (700)
T PRK12323 139 HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGE 198 (700)
T ss_pred HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHH
Confidence 457889998876 4456666666777888889999999 88899999999888888887764
No 60
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.63 E-value=7.4e-15 Score=161.78 Aligned_cols=175 Identities=21% Similarity=0.330 Sum_probs=126.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccc-cCCCCcceEEEE
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLVEV 234 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~~i~i 234 (459)
+..+.++|.++..+++.+.+.. .. ..+++|+||||||||++++++|+.+...- .....+..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~------~~--------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR------RK--------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc------CC--------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 4567889988877776655432 11 23489999999999999999999873211 111235667888
Q ss_pred cccccc--ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 235 NAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 235 ~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
+...+. .++.++.+..+..+|+.+.. ..++||||||++.+...+.. .+.+....+.|...+ ..
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~------~~~~~~~~~~L~~~l----~~ 309 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEK-----EPNAILFIDEIHTIVGAGAT------SGGSMDASNLLKPAL----SS 309 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhc-----cCCeEEEEecHHHHhccCCC------CCccHHHHHHHHHHH----hC
Confidence 887776 46778888889999988765 25789999999999865321 111233444444443 34
Q ss_pred CCEEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 313 PNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 313 ~~viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
+.+.+|++||..+ ..|+++.+||. .+.++.|+.+++.+|++.....+
T Consensus 310 g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~ 361 (731)
T TIGR02639 310 GKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKY 361 (731)
T ss_pred CCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHH
Confidence 7788888888633 46999999996 78999999999999999877764
No 61
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=6.9e-15 Score=152.40 Aligned_cols=139 Identities=17% Similarity=0.274 Sum_probs=95.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDE 275 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDE 275 (459)
.++||||+|+|||+|++++++.+... +..++++++..+...+.......-...|... .....+|+|||
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~------~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~------~~~~dvLiIDD 210 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES------GGKILYVRSELFTEHLVSAIRSGEMQRFRQF------YRNVDALFIED 210 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc------CCCEEEeeHHHHHHHHHHHHhcchHHHHHHH------cccCCEEEEcc
Confidence 49999999999999999999987421 2445677766554322211111001112221 13568999999
Q ss_pred hHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCc---ccHHHhccC--CeEEEeCCCCHHHHH
Q 012655 276 VESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---IDIAFVDRA--DIKAYVGPPTLQARY 350 (459)
Q Consensus 276 id~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~---ld~al~~R~--~~~i~~~~P~~~~r~ 350 (459)
++.+..+. .....++..++.+...++.+|++++..+.. +++.+.+|| +..+.+.+|+.++|.
T Consensus 211 iq~l~~k~-------------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~ 277 (445)
T PRK12422 211 IEVFSGKG-------------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLR 277 (445)
T ss_pred hhhhcCCh-------------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHH
Confidence 99875421 234566677766655567777777666654 578899998 589999999999999
Q ss_pred HHHHHHHHH
Q 012655 351 EILRSCLQE 359 (459)
Q Consensus 351 ~Il~~~l~~ 359 (459)
.|++..+..
T Consensus 278 ~iL~~k~~~ 286 (445)
T PRK12422 278 SFLERKAEA 286 (445)
T ss_pred HHHHHHHHH
Confidence 999988876
No 62
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.3e-14 Score=149.35 Aligned_cols=165 Identities=17% Similarity=0.251 Sum_probs=110.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCC----------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY---------- 226 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~---------- 226 (459)
.|++++|++.+++.|...+... .+ +..++|+|||||||||+|+++|+.+...-....
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~------~l-------~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKN------SI-------SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 4899999999988887765431 11 245899999999999999999999864210000
Q ss_pred -----CcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 227 -----PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 227 -----~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
....++.+++.+- .....++.+.+.+.... ......+++|||++.+.. ..++.
T Consensus 79 ~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p-~~~~~kVvIIDE~h~Lt~---------------~a~~~ 136 (472)
T PRK14962 79 SIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRP-MEGKYKVYIIDEVHMLTK---------------EAFNA 136 (472)
T ss_pred HHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhCh-hcCCeEEEEEEChHHhHH---------------HHHHH
Confidence 0112344444321 11233444444443211 123457999999998864 34577
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
|+..++. ..+.+++|.+++.+..+.+++.+|+ ..+.+.+++.++...+++..+..
T Consensus 137 LLk~LE~--p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 137 LLKTLEE--PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred HHHHHHh--CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHH
Confidence 8888776 3345666655556678899999999 68899999999988888877764
No 63
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=3.3e-14 Score=151.90 Aligned_cols=165 Identities=19% Similarity=0.275 Sum_probs=115.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCc--------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ-------- 228 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~-------- 228 (459)
.|++++|++.+++.|.+.+.. ..+ +..+||+||+|+||||+|+++|+.+..........
T Consensus 14 ~f~divGQe~vv~~L~~~l~~------~rl-------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDL------GRL-------HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHc------CCC-------CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 599999999999988877653 111 23479999999999999999999986532100001
Q ss_pred -------ceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 229 -------CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 229 -------~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
..++++++.+- .....++.+.+.+.... ......|++|||+|.|.. ...|.
T Consensus 81 ~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p-~~g~~KV~IIDEah~Ls~---------------~a~NA 138 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAP-ARGRFKVYLIDEVHMLSR---------------HSFNA 138 (647)
T ss_pred HHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhh-hcCCCEEEEEechHhCCH---------------HHHHH
Confidence 12344444321 11233455544443221 124567999999998854 56799
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
||+.|+. +.+++++|.+|+.+..+.+.+++|| ..+.|.+++.++..+.++..+..
T Consensus 139 LLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~ 193 (647)
T PRK07994 139 LLKTLEE--PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQA 193 (647)
T ss_pred HHHHHHc--CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 9999887 4456666656667788888999998 88999999999998888887765
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.9e-14 Score=150.63 Aligned_cols=211 Identities=20% Similarity=0.233 Sum_probs=139.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC-----------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR----------- 225 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~----------- 225 (459)
.|++++|++.+++.|.+.+.. |-- ...+||+||+|+||||+|+++|+.+.......
T Consensus 13 tFddVIGQe~vv~~L~~aI~~-------grl------~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALER-------GRL------HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 499999999999999887653 211 24589999999999999999999986421100
Q ss_pred ----CCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 226 ----YPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 226 ----~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
..+..++++++.+- .....++.+...+.... ......|++|||+|.|.. ...+.
T Consensus 80 ~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P-~~gk~KV~IIDEVh~LS~---------------~A~NA 137 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAP-TQGRFKVYLIDEVHMLST---------------HSFNA 137 (702)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhh-hcCCcEEEEEechHhcCH---------------HHHHH
Confidence 01113455554321 12234555554443221 123567999999998854 35788
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFS 381 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 381 (459)
|++.|+.. .+.+.+|.+++.+..+...+++|| ..+.+.+++.++..+.++..+.+. |.
T Consensus 138 LLKtLEEP--P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kE---gI---------------- 195 (702)
T PRK14960 138 LLKTLEEP--PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKE---QI---------------- 195 (702)
T ss_pred HHHHHhcC--CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHc---CC----------------
Confidence 88888863 344455555566777788889999 788899999999988888887762 11
Q ss_pred HHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCCCHHHHHH
Q 012655 382 ILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLL 444 (459)
Q Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~~ 444 (459)
.+ ....+..||+.+.| +.|++-.++..+.+. +...++.+++..
T Consensus 196 ---------~i--------d~eAL~~IA~~S~G-dLRdALnLLDQaIay--g~g~IT~edV~~ 238 (702)
T PRK14960 196 ---------AA--------DQDAIWQIAESAQG-SLRDALSLTDQAIAY--GQGAVHHQDVKE 238 (702)
T ss_pred ---------CC--------CHHHHHHHHHHcCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHH
Confidence 01 01247788888888 666666666555432 355677666654
No 65
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.60 E-value=4.9e-14 Score=143.36 Aligned_cols=238 Identities=16% Similarity=0.172 Sum_probs=142.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+++.++..+.|..++..... |-. +..++|+||||||||++++.+++.+............+++++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~----~~~------~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR----GSR------PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc----CCC------CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4678888888888887764322 211 346999999999999999999998743211101114568888865
Q ss_pred ccccc--cc--------------hhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHH
Q 012655 239 LFSKW--FS--------------ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL 302 (459)
Q Consensus 239 l~~~~--~~--------------e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~l 302 (459)
..+.+ +. ..+.....++..+...+.....+.+|+|||+|.+.... ..++..+
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------~~~L~~l 152 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------DDLLYQL 152 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------cHHHHhH
Confidence 43211 00 00001123344444433333567899999999996311 1234444
Q ss_pred HHHHHhh-cCCCCEEEEEecCCCC---cccHHHhccCC-eEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcc
Q 012655 303 LTQMDKL-KSSPNVIILTTSNITA---AIDIAFVDRAD-IKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSML 377 (459)
Q Consensus 303 l~~l~~l-~~~~~viIi~Ttn~~~---~ld~al~~R~~-~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l 377 (459)
+...+.. ....++.+|+++|.+. .+++.+.+||. ..+.+++++.++..+|++..++.....+.+.
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~---------- 222 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLD---------- 222 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCC----------
Confidence 4431111 1235677777788765 46778888885 6789999999999999999886421111110
Q ss_pred cchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 378 PNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 378 ~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
.+. -..+..++..+.|. .|..-.++..| .|...+...++.+++..|+....
T Consensus 223 ------------~~~---------l~~i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 223 ------------DGV---------IPLCAALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred ------------hhH---------HHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 000 11244556666674 33334455555 34455667899999998887653
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=4.2e-14 Score=143.69 Aligned_cols=213 Identities=19% Similarity=0.213 Sum_probs=134.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC-CC--------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR-YP-------- 227 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~-~~-------- 227 (459)
.|++++|++.+++.+.+.+.. ..+ +..++|+||+|+||||+|+++|+.+....... .|
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~------~~~-------~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSL------GRI-------HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred chhhccChHHHHHHHHHHHHc------CCC-------CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 599999999999988776643 111 24579999999999999999999986322110 01
Q ss_pred ------cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 228 ------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 228 ------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
...++++++.+- .....++.+.+.+... .......+++|||+|.+.. ...+.
T Consensus 81 ~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~-p~~~~~kviIIDEa~~l~~---------------~a~na 138 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASR------TKVEEMREILDNIYYS-PSKSRFKVYLIDEVHMLSR---------------HSFNA 138 (363)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhcC-cccCCceEEEEEChhhcCH---------------HHHHH
Confidence 012233332210 1122344444333211 1113456999999998754 35677
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFS 381 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 381 (459)
+++.++.. .+.+.+|.+++....+.+++.+|+ ..+.+++++.++..++++..++.. |.
T Consensus 139 LLk~lEe~--~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~---g~---------------- 196 (363)
T PRK14961 139 LLKTLEEP--PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKE---SI---------------- 196 (363)
T ss_pred HHHHHhcC--CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHc---CC----------------
Confidence 88888763 345545555566677888999998 788999999999999988877763 11
Q ss_pred HHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCCCHHHHHHHH
Q 012655 382 ILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLTV 446 (459)
Q Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~~Al 446 (459)
.+. ...+..+++.+.| +.|++..++..+.+. +...++.+++.+++
T Consensus 197 ---------~i~--------~~al~~ia~~s~G-~~R~al~~l~~~~~~--~~~~It~~~v~~~l 241 (363)
T PRK14961 197 ---------DTD--------EYALKLIAYHAHG-SMRDALNLLEHAINL--GKGNINIKNVTDML 241 (363)
T ss_pred ---------CCC--------HHHHHHHHHHcCC-CHHHHHHHHHHHHHh--cCCCCCHHHHHHHH
Confidence 000 1236677888877 666666655554332 35667777776654
No 67
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=5e-14 Score=152.89 Aligned_cols=165 Identities=22% Similarity=0.312 Sum_probs=113.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcc-------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQC------- 229 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~------- 229 (459)
.|++++|++.+++.|.+.+.. ..+ +..+||+||+||||||+|+++|+.+..........|
T Consensus 14 tFddIIGQe~Iv~~LknaI~~------~rl-------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQ------QRL-------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHh------CCC-------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 599999999999988877643 112 244799999999999999999999965311000001
Q ss_pred --------eEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 230 --------QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 230 --------~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
-++++++.+ ......++.+...+.... ......|+||||++.|.. ..++.
T Consensus 81 ~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P-~~gk~KViIIDEAh~LT~---------------eAqNA 138 (944)
T PRK14949 81 EIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRP-SRGRFKVYLIDEVHMLSR---------------SSFNA 138 (944)
T ss_pred HHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhh-hcCCcEEEEEechHhcCH---------------HHHHH
Confidence 123333321 011233555554443221 124567999999998854 56789
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
||+.|+. +.+++++|.+|+.+..+.+.+++|| ..+.|.+++.++..+.+++.+..
T Consensus 139 LLKtLEE--PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 139 LLKTLEE--PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred HHHHHhc--cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 9999887 3445555555666777888999999 88999999999999888887765
No 68
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4e-14 Score=148.97 Aligned_cols=213 Identities=19% Similarity=0.179 Sum_probs=138.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC-C---------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR-Y--------- 226 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~-~--------- 226 (459)
.|++++|++.+++.|.+.+... .+ +..+||+||+|+||||+|+++|+.+...-... .
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~------~l-------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQ------YL-------HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhC------CC-------CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 4999999999999998887531 11 24589999999999999999999986431100 0
Q ss_pred -----CcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 227 -----PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 227 -----~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
.+..++++++.+- .....++.+.+.+.... ......|++|||+|.+.. ...|+
T Consensus 81 ~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p-~~~~~kV~iIDE~~~ls~---------------~a~na 138 (509)
T PRK14958 81 EIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAP-TKGRFKVYLIDEVHMLSG---------------HSFNA 138 (509)
T ss_pred HHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhcc-ccCCcEEEEEEChHhcCH---------------HHHHH
Confidence 0112455554321 11233444444433211 123557999999998864 45788
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFS 381 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 381 (459)
|++.|+.. ..++++|.+|+.+..+...+++|+ ..+.+.+++..+....++..+++. |.
T Consensus 139 LLk~LEep--p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~e---gi---------------- 196 (509)
T PRK14958 139 LLKTLEEP--PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEE---NV---------------- 196 (509)
T ss_pred HHHHHhcc--CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHc---CC----------------
Confidence 99988873 344555555566677777899998 777899999888888777777652 11
Q ss_pred HHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCCCHHHHHHHH
Q 012655 382 ILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLTV 446 (459)
Q Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~~Al 446 (459)
.+. ...+..+++.+.| |.|++..++..+.+. +...+|.+++.+.+
T Consensus 197 ---------~~~--------~~al~~ia~~s~G-slR~al~lLdq~ia~--~~~~It~~~V~~~l 241 (509)
T PRK14958 197 ---------EFE--------NAALDLLARAANG-SVRDALSLLDQSIAY--GNGKVLIADVKTML 241 (509)
T ss_pred ---------CCC--------HHHHHHHHHHcCC-cHHHHHHHHHHHHhc--CCCCcCHHHHHHHH
Confidence 000 1236677888877 677777766555333 34567776665543
No 69
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4.5e-14 Score=150.34 Aligned_cols=213 Identities=19% Similarity=0.218 Sum_probs=139.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCC------C---
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY------P--- 227 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~------~--- 227 (459)
.|++++|++.+++.|.+.+.. |-- +..+||+||+|+||||+|+++|+.+...-.... .
T Consensus 14 tFddIIGQe~vv~~L~~ai~~-------~rl------~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDE-------GRL------HHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 499999999999999888663 111 356899999999999999999999864321100 0
Q ss_pred ------cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 228 ------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 228 ------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
...++++++.+ ......++.++..+.... ......|++|||++.+.. ...+.
T Consensus 81 ~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P-~~gk~KVIIIDEad~Ls~---------------~A~NA 138 (709)
T PRK08691 81 QIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAP-TAGKYKVYIIDEVHMLSK---------------SAFNA 138 (709)
T ss_pred HHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhh-hhCCcEEEEEECccccCH---------------HHHHH
Confidence 11223343322 112234555555443321 123457999999987643 45788
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFS 381 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 381 (459)
|++.|+.. .+.+.+|.+++.+..+...+++|| ..+.|.+++.++...+++..++.. |+
T Consensus 139 LLKtLEEP--p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kE---gi---------------- 196 (709)
T PRK08691 139 MLKTLEEP--PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSE---KI---------------- 196 (709)
T ss_pred HHHHHHhC--CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHc---CC----------------
Confidence 99998863 345555556677778888899999 778899999999988888877752 11
Q ss_pred HHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCCCHHHHHHHH
Q 012655 382 ILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLTV 446 (459)
Q Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~~Al 446 (459)
.+. ...+..|++.+.| +.|++..++..+.+. +...|+.+++...+
T Consensus 197 ---------~id--------~eAL~~Ia~~A~G-slRdAlnLLDqaia~--g~g~It~e~V~~lL 241 (709)
T PRK08691 197 ---------AYE--------PPALQLLGRAAAG-SMRDALSLLDQAIAL--GSGKVAENDVRQMI 241 (709)
T ss_pred ---------CcC--------HHHHHHHHHHhCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHHH
Confidence 010 1237788888877 677777766655443 34456766655543
No 70
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=5.3e-14 Score=146.26 Aligned_cols=198 Identities=12% Similarity=0.121 Sum_probs=129.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDE 275 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDE 275 (459)
.++|||++|+|||+|++++++.+... .++..++++++.++...+........ ..+..... ......+|+|||
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~----~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~---~~~~~dvLiIDD 214 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESN----FSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKN---EICQNDVLIIDD 214 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHH---HhccCCEEEEec
Confidence 49999999999999999999977421 23456678888776554433222110 11111111 123567999999
Q ss_pred hHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccC--CeEEEeCCCCHHHHH
Q 012655 276 VESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQARY 350 (459)
Q Consensus 276 id~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~--~~~i~~~~P~~~~r~ 350 (459)
++.+..+ ......|+..++.+...++.+|+++...|..+ ++.+.+|| +..+.+.+|+.++|.
T Consensus 215 iq~l~~k-------------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 215 VQFLSYK-------------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred cccccCC-------------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHH
Confidence 9877532 24566788888877777777777766666554 78888998 688899999999999
Q ss_pred HHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHh
Q 012655 351 EILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAA 430 (459)
Q Consensus 351 ~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~ 430 (459)
+|+++.++.. |. . . .+. ...+..||+.+.| +.|.|..++..+.+.
T Consensus 282 ~iL~~~~~~~---gl-~-------~---------------~l~--------~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 282 AIIKKEIKNQ---NI-K-------Q---------------EVT--------EEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred HHHHHHHHhc---CC-C-------C---------------CCC--------HHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 9999988863 11 0 0 000 1136677777777 677777666655322
Q ss_pred h-cC--CCCCCHHHHHHHHHHH
Q 012655 431 L-AN--PNGCDPSKFLLTVIDT 449 (459)
Q Consensus 431 ~-~~--~~~it~~d~~~Al~~~ 449 (459)
. .. ...+|.+.+.+++.+.
T Consensus 327 a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 327 SQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HhcccCCCCCCHHHHHHHHhhc
Confidence 2 22 3567777777777654
No 71
>PRK04195 replication factor C large subunit; Provisional
Probab=99.58 E-value=5.9e-14 Score=147.80 Aligned_cols=162 Identities=21% Similarity=0.290 Sum_probs=109.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.+++++|+++.++.|..++.... .|.. ++.+||+||||+||||+|+++|+.++..+ +++++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~----~g~~------~~~lLL~GppG~GKTtla~ala~el~~~~---------ielna 72 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWL----KGKP------KKALLLYGPPGVGKTSLAHALANDYGWEV---------IELNA 72 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHh----cCCC------CCeEEEECCCCCCHHHHHHHHHHHcCCCE---------EEEcc
Confidence 38899999999999999886532 2322 46799999999999999999999997554 78887
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhc-ccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCE
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEE-NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV 315 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~-~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~v 315 (459)
++... ...+..+...+....... ....+|+|||+|.+... .....+++++..++. .+.
T Consensus 73 sd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-----------~d~~~~~aL~~~l~~----~~~ 131 (482)
T PRK04195 73 SDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-----------EDRGGARAILELIKK----AKQ 131 (482)
T ss_pred ccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-----------cchhHHHHHHHHHHc----CCC
Confidence 65421 112222222222110011 24679999999987541 112345666666653 223
Q ss_pred EEEEecCCCCcccH-HHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 316 IILTTSNITAAIDI-AFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 316 iIi~Ttn~~~~ld~-al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
.+|+++|.+..+.. .+++|+ ..+.|++|+..++..+++..+..
T Consensus 132 ~iIli~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 132 PIILTANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CEEEeccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 34455677777766 666776 78899999999999998887765
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=6.9e-14 Score=145.35 Aligned_cols=212 Identities=19% Similarity=0.167 Sum_probs=140.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC-----------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR----------- 225 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~----------- 225 (459)
.|++++|++.+++.|.+.+.. |-- +..+||+||+|+||||+|+.+|+.+.......
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~-------~ri------~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTL-------NKI------PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHc-------CCC------CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 499999999999888766542 111 35699999999999999999999875432110
Q ss_pred ----CCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 226 ----YPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 226 ----~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
..+..++++++.+- .+...++.+.+.+.... ......+++|||++.+.. ..+|+
T Consensus 78 ~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P-~~~~~KVvIIDEah~Ls~---------------~A~Na 135 (491)
T PRK14964 78 SIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLP-ISSKFKVYIIDEVHMLSN---------------SAFNA 135 (491)
T ss_pred HHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhcc-ccCCceEEEEeChHhCCH---------------HHHHH
Confidence 11234466665432 12244666655554321 124567999999987754 45788
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFS 381 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 381 (459)
|++.|+.. .+.+++|.+|+....+...+++|+ ..+.+.+++.++..+.++..+++. |.
T Consensus 136 LLK~LEeP--p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~E---gi---------------- 193 (491)
T PRK14964 136 LLKTLEEP--APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKE---NI---------------- 193 (491)
T ss_pred HHHHHhCC--CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHc---CC----------------
Confidence 99998873 345555555566777888999999 778999999999888888877752 11
Q ss_pred HHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCCCHHHHHHH
Q 012655 382 ILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLT 445 (459)
Q Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~~A 445 (459)
.+. ...+..|++.+.| +.|++..+...+.+.. ...+|.+++.+.
T Consensus 194 ---------~i~--------~eAL~lIa~~s~G-slR~alslLdqli~y~--~~~It~e~V~~l 237 (491)
T PRK14964 194 ---------EHD--------EESLKLIAENSSG-SMRNALFLLEQAAIYS--NNKISEKSVRDL 237 (491)
T ss_pred ---------CCC--------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhc--CCCCCHHHHHHH
Confidence 010 1236778888877 6666666655543322 236777776654
No 73
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=1.2e-13 Score=144.51 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=141.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc----------CCC
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS----------SRY 226 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~----------~~~ 226 (459)
.|++++|++.+.+.|...+.. |-- +..+||+||+||||||+|+++|+.+..... ...
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~-------~ri------~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILN-------DRL------AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHc-------CCC------CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 489999999999888776543 111 246999999999999999999999965321 000
Q ss_pred C---------cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHH
Q 012655 227 P---------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIR 297 (459)
Q Consensus 227 ~---------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~ 297 (459)
. +..++++++.+ ......++.+.+.+.... ......+++|||++.+.. .
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P-~~~~~KVvIIDEa~~Ls~---------------~ 143 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKP-LQGKHKIFIIDEVHMLSK---------------G 143 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhcc-ccCCcEEEEEEChhhcCH---------------H
Confidence 0 11233333321 112344566665554321 123557999999998753 4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcc
Q 012655 298 VVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSML 377 (459)
Q Consensus 298 ~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l 377 (459)
.++.|++.|+. +...+++|.+|+....+..++.+|+ ..+.+.+++.++..++++..+++. |.
T Consensus 144 a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~e---gi------------ 205 (507)
T PRK06645 144 AFNALLKTLEE--PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQE---NL------------ 205 (507)
T ss_pred HHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHc---CC------------
Confidence 57788888876 3455666655667778888999999 678899999999999999988763 11
Q ss_pred cchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhc-CCCCCCHHHHHHHH
Q 012655 378 PNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALA-NPNGCDPSKFLLTV 446 (459)
Q Consensus 378 ~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~-~~~~it~~d~~~Al 446 (459)
.+. ...+..|++.+.| +.|++-.+...+.+... ....+|.+++.+.+
T Consensus 206 -------------~ie--------~eAL~~Ia~~s~G-slR~al~~Ldkai~~~~~~~~~It~~~V~~ll 253 (507)
T PRK06645 206 -------------KTD--------IEALRIIAYKSEG-SARDAVSILDQAASMSAKSDNIISPQVINQML 253 (507)
T ss_pred -------------CCC--------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhhccCCCCcCHHHHHHHH
Confidence 000 1236778888887 77777777766644333 23357776665543
No 74
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.57 E-value=2.6e-14 Score=136.29 Aligned_cols=165 Identities=21% Similarity=0.242 Sum_probs=112.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.+++++|++.+.+.|.+.+.. .. .-++|||||||||||+.++++|+++.-+ ....+++.+.|+
T Consensus 34 t~de~~gQe~vV~~L~~a~~~------~~--------lp~~LFyGPpGTGKTStalafar~L~~~---~~~~~rvl~lna 96 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR------RI--------LPHYLFYGPPGTGKTSTALAFARALNCE---QLFPCRVLELNA 96 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh------cC--------CceEEeeCCCCCcHhHHHHHHHHHhcCc---cccccchhhhcc
Confidence 489999999999988887653 12 2349999999999999999999999542 133466677777
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHH-----hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVE-----EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~-----~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
++-.+..+... --+-|.+...... ....+.|++|||.|.+.. ...++|...|+...
T Consensus 97 SderGisvvr~---Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---------------daq~aLrr~mE~~s- 157 (346)
T KOG0989|consen 97 SDERGISVVRE---KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---------------DAQAALRRTMEDFS- 157 (346)
T ss_pred cccccccchhh---hhcCHHHHhhccccccCCCCCcceEEEEechhhhhH---------------HHHHHHHHHHhccc-
Confidence 66544332111 1112222222110 012337999999999876 45677888888743
Q ss_pred CCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 312 SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 312 ~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
.+++++..+|..+.+...+.+|+ .++.|++...+...+.|+....+
T Consensus 158 -~~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~ 203 (346)
T KOG0989|consen 158 -RTTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASK 203 (346)
T ss_pred -cceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHH
Confidence 45666666899999999999999 66778777777666666666554
No 75
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.57 E-value=7.9e-14 Score=142.79 Aligned_cols=197 Identities=23% Similarity=0.237 Sum_probs=124.5
Q ss_pred cCccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCC--ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCC
Q 012655 149 LPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNP--FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY 226 (459)
Q Consensus 149 lP~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~--~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~ 226 (459)
.|..-...+-+.++|++.+|+.+...+.+....-..+... .......++||+||||||||++|+++|..++.+|
T Consensus 61 ~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf---- 136 (412)
T PRK05342 61 TPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF---- 136 (412)
T ss_pred CHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc----
Confidence 4444444455568999999999877665432222111110 0011246799999999999999999999998777
Q ss_pred CcceEEEEcccccc-ccccchhh-HHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHH
Q 012655 227 PQCQLVEVNAHSLF-SKWFSESG-KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (459)
Q Consensus 227 ~~~~~i~i~~~~l~-~~~~~e~~-~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (459)
+.+++..+. ..|.+... ..+..+++.+...+. ...+++|||||||.+..+.... +..-......++++||.
T Consensus 137 -----~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~-~a~~gIi~iDEIdkl~~~~~~~-~~~~d~s~~~vQ~~LL~ 209 (412)
T PRK05342 137 -----AIADATTLTEAGYVGEDVENILLKLLQAADYDVE-KAQRGIVYIDEIDKIARKSENP-SITRDVSGEGVQQALLK 209 (412)
T ss_pred -----eecchhhcccCCcccchHHHHHHHHHHhccccHH-HcCCcEEEEechhhhccccCCC-CcCCCcccHHHHHHHHH
Confidence 677777665 34555532 233344333221111 2367899999999998763211 11111122468899999
Q ss_pred HHHhh-----------cCCCCEEEEEecCCCCc-----------------------------------------------
Q 012655 305 QMDKL-----------KSSPNVIILTTSNITAA----------------------------------------------- 326 (459)
Q Consensus 305 ~l~~l-----------~~~~~viIi~Ttn~~~~----------------------------------------------- 326 (459)
.|++- .+....++|.|+|....
T Consensus 210 ~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~d 289 (412)
T PRK05342 210 ILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPED 289 (412)
T ss_pred HHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHH
Confidence 99842 11234677777776110
Q ss_pred -----ccHHHhccCCeEEEeCCCCHHHHHHHHHHH
Q 012655 327 -----IDIAFVDRADIKAYVGPPTLQARYEILRSC 356 (459)
Q Consensus 327 -----ld~al~~R~~~~i~~~~P~~~~r~~Il~~~ 356 (459)
+.+.|+.|++.++.|.+.+.+...+|+...
T Consensus 290 L~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~ 324 (412)
T PRK05342 290 LIKFGLIPEFIGRLPVVATLEELDEEALVRILTEP 324 (412)
T ss_pred HHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHH
Confidence 246677889999999999999988888743
No 76
>PLN03025 replication factor C subunit; Provisional
Probab=99.57 E-value=6.4e-14 Score=139.98 Aligned_cols=161 Identities=20% Similarity=0.187 Sum_probs=106.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|++++.+.|..++.. +- ..+++|+|||||||||+|+++|+.+.... ....++++++
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~-------~~-------~~~lll~Gp~G~GKTtla~~la~~l~~~~----~~~~~~eln~ 72 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARD-------GN-------MPNLILSGPPGTGKTTSILALAHELLGPN----YKEAVLELNA 72 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhc-------CC-------CceEEEECCCCCCHHHHHHHHHHHHhccc----Cccceeeecc
Confidence 488999999998888776542 11 12489999999999999999999973211 1123466666
Q ss_pred ccccccccchhhHHHHHHHHHHHHHH--HhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCC
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMV--EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~--~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~ 314 (459)
.+..+ ...++.......... .......+++|||+|.+.. ...+.|+..++... ..
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~---------------~aq~aL~~~lE~~~--~~ 129 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS---------------GAQQALRRTMEIYS--NT 129 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH---------------HHHHHHHHHHhccc--CC
Confidence 54321 112222211111100 0012467999999998865 23566777765432 33
Q ss_pred EEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 315 VIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 315 viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
+.++.++|....+.+++++|+ ..+.+++|+.++....++..+++
T Consensus 130 t~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred ceEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHH
Confidence 445566777788888999998 68899999999998888887765
No 77
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=6.3e-14 Score=147.89 Aligned_cols=141 Identities=18% Similarity=0.333 Sum_probs=99.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDE 275 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDE 275 (459)
.++|||++|+|||+|++++++++... .++..++++++.++...+...........|.+.. ....+|+|||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~----~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y------~~~DLLlIDD 385 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRL----YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY------REMDILLVDD 385 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh------hcCCEEEEeh
Confidence 39999999999999999999987421 2345567888877765543322211111222221 2568999999
Q ss_pred hHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCc---ccHHHhccC--CeEEEeCCCCHHHHH
Q 012655 276 VESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---IDIAFVDRA--DIKAYVGPPTLQARY 350 (459)
Q Consensus 276 id~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~---ld~al~~R~--~~~i~~~~P~~~~r~ 350 (459)
|+.+..+. .....|+..++.+...++.+||++...+.. +++.+.+|| +..+.+..|+.+.|.
T Consensus 386 Iq~l~gke-------------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 386 IQFLEDKE-------------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred hccccCCH-------------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 99885432 334667778887776666677766555543 578899998 788899999999999
Q ss_pred HHHHHHHHH
Q 012655 351 EILRSCLQE 359 (459)
Q Consensus 351 ~Il~~~l~~ 359 (459)
+||+..+..
T Consensus 453 aIL~kka~~ 461 (617)
T PRK14086 453 AILRKKAVQ 461 (617)
T ss_pred HHHHHHHHh
Confidence 999998776
No 78
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.56 E-value=1.2e-13 Score=138.84 Aligned_cols=167 Identities=20% Similarity=0.273 Sum_probs=105.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+.+++.|..++.. +. ..+++|+||||||||++|+++++.+... .....++.+++
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~-------~~-------~~~lll~Gp~GtGKT~la~~~~~~l~~~----~~~~~~~~i~~ 74 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDS-------PN-------LPHLLVQGPPGSGKTAAVRALARELYGD----PWENNFTEFNV 74 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhC-------CC-------CceEEEECCCCCCHHHHHHHHHHHhcCc----ccccceEEech
Confidence 489999999999998887653 11 1259999999999999999999988422 11234567777
Q ss_pred cccccccc-------------ch---hhHHHHHHHHHHHHHHHh----cccchhhhhhhhHhHHHhhhhccCCCCCCchH
Q 012655 237 HSLFSKWF-------------SE---SGKLVAKLFQKIQEMVEE----ENNLVFVLIDEVESLAAARKAALSGSEPSDSI 296 (459)
Q Consensus 237 ~~l~~~~~-------------~e---~~~~v~~~f~~~~~~~~~----~~~~~illIDEid~l~~~r~~~ls~~e~~~~~ 296 (459)
.++...+. +. +.......++.+...... .....+|+|||++.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------- 139 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------- 139 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------------
Confidence 65432110 00 000012233332221111 13456999999987743
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 297 RVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 297 ~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
...+.|...++..... ..+|++ ++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+.+
T Consensus 140 ~~~~~L~~~le~~~~~-~~~Il~-~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~ 199 (337)
T PRK12402 140 DAQQALRRIMEQYSRT-CRFIIA-TRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEA 199 (337)
T ss_pred HHHHHHHHHHHhccCC-CeEEEE-eCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 2345566666654332 334444 444556667788997 67889999999998888887765
No 79
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.56 E-value=1.2e-13 Score=150.99 Aligned_cols=177 Identities=19% Similarity=0.304 Sum_probs=122.7
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccc-ccCCCCcceEEE
Q 012655 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR-FSSRYPQCQLVE 233 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~-~~~~~~~~~~i~ 233 (459)
++.++.++|.+...+++.+.+.. +. ..+++|+||||||||++++.+++.+-.. .-....++.++.
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r-----~~---------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~ 247 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR-----RR---------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc-----cC---------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe
Confidence 35567788888877777765543 11 2348999999999999999999876211 000123455566
Q ss_pred Ecccccc--ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 234 VNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 234 i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
++...+. .+|.++....+..++..+.. ..+++|||||++.+...+.. ......+.+.|... ..
T Consensus 248 l~~~~llaG~~~~Ge~e~rl~~l~~~l~~-----~~~~ILfIDEIh~L~g~g~~------~~g~~d~~nlLkp~----L~ 312 (758)
T PRK11034 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQ-----DTNSILFIDEIHTIIGAGAA------SGGQVDAANLIKPL----LS 312 (758)
T ss_pred ccHHHHhcccchhhhHHHHHHHHHHHHHh-----cCCCEEEeccHHHHhccCCC------CCcHHHHHHHHHHH----Hh
Confidence 6555554 34566777777788877654 36789999999999875421 11223333333333 34
Q ss_pred CCCEEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHH
Q 012655 312 SPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELI 361 (459)
Q Consensus 312 ~~~viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~ 361 (459)
.+.+.+|++|+..+ ..|++|.+||. .+.++.|+.+++.+|++.....+.
T Consensus 313 ~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye 366 (758)
T PRK11034 313 SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYE 366 (758)
T ss_pred CCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhh
Confidence 57899999999865 35999999995 799999999999999998877653
No 80
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.56 E-value=2.1e-13 Score=140.16 Aligned_cols=231 Identities=22% Similarity=0.249 Sum_probs=143.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+++.++..+.|...+..... |-. +..++|+||||+|||++++.+++.+.... +...++++++..
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~----~~~------~~~~lI~G~~GtGKT~l~~~v~~~l~~~~----~~~~~v~in~~~ 95 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR----GSR------PLNVLIYGPPGTGKTTTVKKVFEELEEIA----VKVVYVYINCQI 95 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC----CCC------CCeEEEECCCCCCHHHHHHHHHHHHHHhc----CCcEEEEEECCc
Confidence 4577777777777777654221 211 35589999999999999999999874321 235568888865
Q ss_pred ccccc----------cc----hhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHH
Q 012655 239 LFSKW----------FS----ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (459)
Q Consensus 239 l~~~~----------~~----e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (459)
..+.+ .+ ..+.....++..+...+.....+.+|+|||+|.+.... ....+..++.
T Consensus 96 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-----------~~~~l~~l~~ 164 (394)
T PRK00411 96 DRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-----------GNDVLYSLLR 164 (394)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-----------CchHHHHHHH
Confidence 43210 01 11112334555555544444567899999999997211 1245666666
Q ss_pred HHHhhcCCCCEEEEEecCCCC---cccHHHhccCC-eEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccch
Q 012655 305 QMDKLKSSPNVIILTTSNITA---AIDIAFVDRAD-IKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNF 380 (459)
Q Consensus 305 ~l~~l~~~~~viIi~Ttn~~~---~ld~al~~R~~-~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~ 380 (459)
.++... ..++.+|+++|... .+++.+.+|+. ..+.+++++.++..+|++..++.....+.+
T Consensus 165 ~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~-------------- 229 (394)
T PRK00411 165 AHEEYP-GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVV-------------- 229 (394)
T ss_pred hhhccC-CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCC--------------
Confidence 655543 23666677766553 45777777774 578999999999999999887542111110
Q ss_pred HHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCC--hHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHH
Q 012655 381 SILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLS--GRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 381 ~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~S--gr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~ 449 (459)
. ...+..+++.+.+.+ .|..-.++..| .|...+...++.+++..|+...
T Consensus 230 ------------~--------~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 230 ------------D--------DEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred ------------C--------HhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 0 112455555554432 33334455555 3444567789999999998876
No 81
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.55 E-value=2e-13 Score=141.06 Aligned_cols=153 Identities=20% Similarity=0.327 Sum_probs=106.1
Q ss_pred hhhhhhhhhhHHHH---HHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEE
Q 012655 157 MWESLIYESGLKQR---LLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (459)
Q Consensus 157 ~~~~li~~~~~k~~---L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (459)
.+++++|++++... +...+.. +. ...++|+|||||||||+|+++++.++.++ +.
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~-------~~-------~~~ilL~GppGtGKTtLA~~ia~~~~~~~---------~~ 66 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEA-------GR-------LSSMILWGPPGTGKTTLARIIAGATDAPF---------EA 66 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHc-------CC-------CceEEEECCCCCCHHHHHHHHHHHhCCCE---------EE
Confidence 47889999887544 5555432 11 23599999999999999999999987555 66
Q ss_pred EccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCC
Q 012655 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (459)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~ 313 (459)
+++... ....++.+++.+..... .....+|+|||++.+... ..+.|+..++. +
T Consensus 67 l~a~~~-------~~~~ir~ii~~~~~~~~-~g~~~vL~IDEi~~l~~~---------------~q~~LL~~le~----~ 119 (413)
T PRK13342 67 LSAVTS-------GVKDLREVIEEARQRRS-AGRRTILFIDEIHRFNKA---------------QQDALLPHVED----G 119 (413)
T ss_pred Eecccc-------cHHHHHHHHHHHHHhhh-cCCceEEEEechhhhCHH---------------HHHHHHHHhhc----C
Confidence 665431 22345555555543221 235679999999988542 34556666543 4
Q ss_pred CEEEEEec--CCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 314 NVIILTTS--NITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 314 ~viIi~Tt--n~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
.+++|++| |....+++++++|| ..+.+++++.++...+++..+...
T Consensus 120 ~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~ 167 (413)
T PRK13342 120 TITLIGATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDK 167 (413)
T ss_pred cEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHh
Confidence 55555543 44557899999999 788899999999999999887763
No 82
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.55 E-value=6e-14 Score=148.87 Aligned_cols=222 Identities=18% Similarity=0.177 Sum_probs=140.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccC-CCCcceEEEEc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS-RYPQCQLVEVN 235 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~-~~~~~~~i~i~ 235 (459)
.|++++|++...+.+...+ +.. . +..++|+||||||||++|+++.+........ ...+..+++++
T Consensus 63 ~f~~iiGqs~~i~~l~~al-----~~~---~------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAAL-----CGP---N------PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred CHHHeeCcHHHHHHHHHHH-----hCC---C------CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 4889999998887776542 111 1 3559999999999999999998876433211 12356788888
Q ss_pred ccccc--c-----cccchhhHHH---HHHHHHH------HHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHH
Q 012655 236 AHSLF--S-----KWFSESGKLV---AKLFQKI------QEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299 (459)
Q Consensus 236 ~~~l~--~-----~~~~e~~~~v---~~~f~~~------~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~ 299 (459)
|.... . ..++.....+ ...|... ...+. .....+|||||++.+.. ..+
T Consensus 129 ~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~-~a~gG~L~IdEI~~L~~---------------~~q 192 (531)
T TIGR02902 129 ATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT-RAHGGVLFIDEIGELHP---------------VQM 192 (531)
T ss_pred cccccCCccccchhhcCCcccchhccccccccCCcccccCchhh-ccCCcEEEEechhhCCH---------------HHH
Confidence 76421 0 1111000000 0000000 00011 13457999999998865 345
Q ss_pred HHHHHHHHhh---------------------------cCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHH
Q 012655 300 NALLTQMDKL---------------------------KSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEI 352 (459)
Q Consensus 300 ~~ll~~l~~l---------------------------~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~I 352 (459)
+.|+..|+.- .+....+|.+|++.++.+++++++|+ ..+++++++.+++.+|
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~I 271 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEI 271 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHH
Confidence 5666655431 01122566788888999999999998 5778999999999999
Q ss_pred HHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHh
Q 012655 353 LRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAA 430 (459)
Q Consensus 353 l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~ 430 (459)
++..+++.. . .+.+ ..+..++..+. ++|++..++..| .|.
T Consensus 272 l~~~a~k~~---i-------------------------~is~--------~al~~I~~y~~--n~Rel~nll~~Aa~~A~ 313 (531)
T TIGR02902 272 AKNAAEKIG---I-------------------------NLEK--------HALELIVKYAS--NGREAVNIVQLAAGIAL 313 (531)
T ss_pred HHHHHHHcC---C-------------------------CcCH--------HHHHHHHHhhh--hHHHHHHHHHHHHHHHh
Confidence 999887631 0 0100 12444555543 789999999888 444
Q ss_pred hcCCCCCCHHHHHHHHH
Q 012655 431 LANPNGCDPSKFLLTVI 447 (459)
Q Consensus 431 ~~~~~~it~~d~~~Al~ 447 (459)
..++..++.+|+.+++.
T Consensus 314 ~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 314 GEGRKRILAEDIEWVAE 330 (531)
T ss_pred hCCCcEEcHHHHHHHhC
Confidence 45667899999999985
No 83
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=1.4e-13 Score=140.38 Aligned_cols=171 Identities=20% Similarity=0.305 Sum_probs=111.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccC-----CCCcce
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS-----RYPQCQ 230 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~-----~~~~~~ 230 (459)
..|++++|++.+++.|.+.+..... +...+....+..+||+||+|+|||++|+++|+.+...... ....|.
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~----~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~ 77 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARA----DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACR 77 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccc----cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence 3699999999999999988875321 1111111224679999999999999999999987543210 000011
Q ss_pred ---------EEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 231 ---------LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 231 ---------~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
+..+.... ..-....++.+++.+.... ......|++|||+|.+.. ...|.
T Consensus 78 ~~~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p-~~~~~kViiIDead~m~~---------------~aana 136 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRP-STGRWRIVVIEDADRLTE---------------RAANA 136 (394)
T ss_pred HHhcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCc-ccCCcEEEEEechhhcCH---------------HHHHH
Confidence 11111110 0111234666666655321 123557999999999865 34688
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILR 354 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~ 354 (459)
|++.|+.. +.+.++|++|+| ++.+.+++++|+ ..++|++|+.++..+++.
T Consensus 137 LLk~LEep-~~~~~fIL~a~~-~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 137 LLKAVEEP-PPRTVWLLCAPS-PEDVLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred HHHHhhcC-CCCCeEEEEECC-hHHChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 99988763 223455555555 788999999999 789999999988877776
No 84
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.54 E-value=2.5e-13 Score=131.91 Aligned_cols=196 Identities=17% Similarity=0.197 Sum_probs=132.2
Q ss_pred EEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhh
Q 012655 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEV 276 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEi 276 (459)
++|+|||||||||||+.|+.-...+- -.+|++.+.. ..-+.++.+|.++++.........|+|||||
T Consensus 165 mIlWGppG~GKTtlArlia~tsk~~S------yrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEi 231 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIASTSKKHS------YRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEI 231 (554)
T ss_pred eEEecCCCCchHHHHHHHHhhcCCCc------eEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHh
Confidence 99999999999999999999875442 2246665533 2346789999999887766677899999999
Q ss_pred HhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEec--CCCCcccHHHhccCCeEEEeCCCCHHHHHHHHH
Q 012655 277 ESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTS--NITAAIDIAFVDRADIKAYVGPPTLQARYEILR 354 (459)
Q Consensus 277 d~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Tt--n~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~ 354 (459)
+++....++ .||-. ..++.+++|++| |+...++.++++|| +++.+..........|+.
T Consensus 232 HRFNksQQD---------------~fLP~----VE~G~I~lIGATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 232 HRFNKSQQD---------------TFLPH----VENGDITLIGATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILM 291 (554)
T ss_pred hhhhhhhhh---------------cccce----eccCceEEEecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHH
Confidence 999775432 22222 245677777654 45556799999999 777788889999999998
Q ss_pred HHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHh--h-
Q 012655 355 SCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAA--L- 431 (459)
Q Consensus 355 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~--~- 431 (459)
+.+.-+..... ..+.+.-+. ..++ ...+..+|..|.|-..+.|..|--.+... .
T Consensus 292 raia~l~dser-----~~~~l~n~s----------~~ve--------~siidyla~lsdGDaR~aLN~Lems~~m~~tr~ 348 (554)
T KOG2028|consen 292 RAIASLGDSER-----PTDPLPNSS----------MFVE--------DSIIDYLAYLSDGDARAALNALEMSLSMFCTRS 348 (554)
T ss_pred HHHHhhccccc-----cCCCCCCcc----------hhhh--------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhc
Confidence 87775533221 111111000 0111 12477889999998888887775443111 1
Q ss_pred --cCCCCCCHHHHHHHHHH
Q 012655 432 --ANPNGCDPSKFLLTVID 448 (459)
Q Consensus 432 --~~~~~it~~d~~~Al~~ 448 (459)
.....++++|+.+++..
T Consensus 349 g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 349 GQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred CCcccceecHHHHHHHHhh
Confidence 23447889998888754
No 85
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.9e-13 Score=142.15 Aligned_cols=165 Identities=19% Similarity=0.249 Sum_probs=112.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccc-----cCCC-----
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-----SSRY----- 226 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-----~~~~----- 226 (459)
.|++++|++.+++.|..++... .+ +..+||+|||||||||+|+++|+.+...- ....
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~------~l-------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~ 78 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQG------RL-------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA 78 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH
Confidence 4999999999999998887641 11 24479999999999999999999985321 0000
Q ss_pred ----CcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHH
Q 012655 227 ----PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL 302 (459)
Q Consensus 227 ----~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~l 302 (459)
.+..++++++.+ ......++.+...+.... ....+.+++|||+|.+.. ..++.|
T Consensus 79 i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p-~~~~~kVVIIDEad~ls~---------------~a~naL 136 (504)
T PRK14963 79 VRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAP-LRGGRKVYILDEAHMMSK---------------SAFNAL 136 (504)
T ss_pred HhcCCCCceEEecccc------cCCHHHHHHHHHHHhhcc-ccCCCeEEEEECccccCH---------------HHHHHH
Confidence 111244444421 111233444433333211 123567999999986632 457788
Q ss_pred HHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 303 LTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 303 l~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
+..++. +..++++|.+++.+..+.+.+.+|+ ..+.|.+++.++..+.++..+.+
T Consensus 137 Lk~LEe--p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 137 LKTLEE--PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred HHHHHh--CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHH
Confidence 888776 3345666666677788899999998 67899999999999999888876
No 86
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=4.4e-13 Score=141.28 Aligned_cols=165 Identities=22% Similarity=0.280 Sum_probs=109.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCC----------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY---------- 226 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~---------- 226 (459)
.|++++|++.+++.|...+... .+ +..+||+||+|+||||+|+.+|+.+........
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~------rl-------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQ------KV-------HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 4899999999998888776531 11 234899999999999999999998864211000
Q ss_pred -----CcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 227 -----PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 227 -----~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
....++++++.+- .....++.+.+.+.... ......|++|||+|.+.. ...+.
T Consensus 81 ~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p-~~g~~kViIIDEa~~ls~---------------~a~na 138 (546)
T PRK14957 81 AINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMP-SQGRYKVYLIDEVHMLSK---------------QSFNA 138 (546)
T ss_pred HHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhh-hcCCcEEEEEechhhccH---------------HHHHH
Confidence 0113344433211 11133445555444322 123567999999998754 46788
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
|++.|+. +.+.+++|.+|+....+...+++|+ ..+.+.+++.++..+.++..+..
T Consensus 139 LLK~LEe--pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~ 193 (546)
T PRK14957 139 LLKTLEE--PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAK 193 (546)
T ss_pred HHHHHhc--CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHH
Confidence 9999886 3344444433444666777799999 88999999999988888887765
No 87
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3.3e-13 Score=143.44 Aligned_cols=165 Identities=16% Similarity=0.178 Sum_probs=112.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC-----------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR----------- 225 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~----------- 225 (459)
.|++++|++.+++.|..++.. |-- +..+||+||+||||||+|+++|+.+.......
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~-------~r~------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 77 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDA-------GRI------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCV 77 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHH
Confidence 599999999999999888753 111 23479999999999999999999986421100
Q ss_pred ------CCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHH
Q 012655 226 ------YPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299 (459)
Q Consensus 226 ------~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~ 299 (459)
..+..++++++.+.. .-..++.+.+.+.... ......|++|||++.+.. ...
T Consensus 78 ~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P-~~~~~KVvIIDEah~Lt~---------------~A~ 135 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAP-AQSRYRIFIVDEAHMVTT---------------AGF 135 (584)
T ss_pred HhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhh-hcCCceEEEEECCCcCCH---------------HHH
Confidence 011223444443211 1233444444433221 123557999999998754 467
Q ss_pred HHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 300 ~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
|+|++.|+. ...++++|.+|+.+..+.+.+++|+ ..+.|..++.++..+.++..+++
T Consensus 136 NALLK~LEE--pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~ 192 (584)
T PRK14952 136 NALLKIVEE--PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQ 192 (584)
T ss_pred HHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHH
Confidence 889999887 3445665555566688888999997 78899999998888888877765
No 88
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.53 E-value=3.4e-13 Score=136.09 Aligned_cols=240 Identities=15% Similarity=0.207 Sum_probs=151.2
Q ss_pred HHHHHHHHHhcCCccCCCCCCCCCCCchhhhccceEEEeeCCCCcccccccccccccceeEEEecCCCCCCccccCCCCc
Q 012655 62 RLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRICVSDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDGQL 141 (459)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 141 (459)
.....+|+.. +.+..+.+.+.++|.|...|+++ ....+ ........+ ...+. .. . ...
T Consensus 14 ~~~~~~w~~~--~~~~~~~~~i~~pn~f~~~~~~~-----~~~~i-~~~~~~~~~-~~~~~-~~--~----------~~~ 71 (408)
T COG0593 14 ETEFESWIRP--LKVEESVLVLYAPNEFVRNWLNS-----KLDLI-KELLQELDG-IIKVE-VR--A----------SAP 71 (408)
T ss_pred hhHHHHHHHH--hhcccceEEEEeCcHHHHHHHHh-----hHHHH-HHHHHHhcC-Cccee-ec--c----------ccc
Confidence 3567788884 44555577788999999999973 21111 111111222 22222 11 0 000
Q ss_pred cccccccc-CccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 142 SSFNEWIL-PAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 142 ~~~~~~~l-P~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
..... .....+..|++++..+.-..........+.... ...+| ++||||.|+|||+|++++++....
T Consensus 72 ---~q~~~~~~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g-~~~np--------lfi~G~~GlGKTHLl~Aign~~~~ 139 (408)
T COG0593 72 ---AQLPLPSGLNPKYTFDNFVVGPSNRLAYAAAKAVAENPG-GAYNP--------LFIYGGVGLGKTHLLQAIGNEALA 139 (408)
T ss_pred ---cccCccccCCCCCchhheeeCCchHHHHHHHHHHHhccC-CcCCc--------EEEECCCCCCHHHHHHHHHHHHHh
Confidence 00001 123445678888876654433222211111111 12444 999999999999999999998853
Q ss_pred cccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHH
Q 012655 221 RFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (459)
Q Consensus 221 ~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (459)
. .++..++++.+..++..++......-..-|..-+ ...+++||+++.+..+. +...
T Consensus 140 ~----~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-------~~dlllIDDiq~l~gk~-------------~~qe 195 (408)
T COG0593 140 N----GPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-------SLDLLLIDDIQFLAGKE-------------RTQE 195 (408)
T ss_pred h----CCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-------ccCeeeechHhHhcCCh-------------hHHH
Confidence 3 4667778888777665554433222222222222 34789999999886642 4578
Q ss_pred HHHHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccC--CeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 301 ALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 301 ~ll~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~--~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
++++.++.+...++.+|+++-..|..+ .+.+.+|| +..+.+.+|+.+.|..|++.....
T Consensus 196 efFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 196 EFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 899999999888888888887777776 58889997 578899999999999999995554
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.2e-13 Score=147.20 Aligned_cols=212 Identities=18% Similarity=0.230 Sum_probs=134.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccc-----------cCC
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-----------SSR 225 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-----------~~~ 225 (459)
.|++++|++.+.+.|.+.+... .+ +..+||+||+|+||||+++++|+.+...- +..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~------rl-------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQ------RL-------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 5999999999999888876531 11 24579999999999999999999986421 000
Q ss_pred CCcc---------eEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchH
Q 012655 226 YPQC---------QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSI 296 (459)
Q Consensus 226 ~~~~---------~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~ 296 (459)
...| .++++++.+- .....++.+...+.... ......|++|||+|.+..
T Consensus 81 C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p-~~g~~KV~IIDEvh~Ls~--------------- 138 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKP-VQGRFKVFMIDEVHMLTN--------------- 138 (618)
T ss_pred cHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCc-ccCCceEEEEEChhhCCH---------------
Confidence 0111 2333333211 11123444444433211 123457999999998865
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCc
Q 012655 297 RVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSM 376 (459)
Q Consensus 297 ~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~ 376 (459)
...|.|++.|+. ..+.+++|.+|+.+..+...+++|+ ..+.+..++.++..+.++..+.+. |+
T Consensus 139 ~a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~e---gi----------- 201 (618)
T PRK14951 139 TAFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAE---NV----------- 201 (618)
T ss_pred HHHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHc---CC-----------
Confidence 457888888776 3345555555566677777899998 889999999998888888777652 11
Q ss_pred ccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCCCHHHHHHH
Q 012655 377 LPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLT 445 (459)
Q Consensus 377 l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~~A 445 (459)
.+. ...+..|++.+.| +.|++-.+...+.+. +...+|.+++.+.
T Consensus 202 --------------~ie--------~~AL~~La~~s~G-slR~al~lLdq~ia~--~~~~It~~~V~~~ 245 (618)
T PRK14951 202 --------------PAE--------PQALRLLARAARG-SMRDALSLTDQAIAF--GSGQLQEAAVRQM 245 (618)
T ss_pred --------------CCC--------HHHHHHHHHHcCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHH
Confidence 000 1236778888887 666666665544332 3456666655543
No 90
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.53 E-value=2.4e-13 Score=128.88 Aligned_cols=182 Identities=16% Similarity=0.155 Sum_probs=117.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
+..++|+||+|||||++++++++..... +..++++++..+.... ..++... ....+|+|
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~------~~~~~~i~~~~~~~~~--------~~~~~~~-------~~~~lLvI 96 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEER------GKSAIYLPLAELAQAD--------PEVLEGL-------EQADLVCL 96 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhc------CCcEEEEeHHHHHHhH--------HHHHhhc-------ccCCEEEE
Confidence 4669999999999999999999987422 2345677776654211 1222211 23468999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccC--CeEEEeCCCCHHH
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQA 348 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~--~~~i~~~~P~~~~ 348 (459)
||++.+.... .....+...++.....+..+|++++..+..+ .+.+.+|+ +..+.+++|+.++
T Consensus 97 Ddi~~l~~~~-------------~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e 163 (226)
T TIGR03420 97 DDVEAIAGQP-------------EWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEE 163 (226)
T ss_pred eChhhhcCCh-------------HHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHH
Confidence 9999875421 1234555555555444455555555444443 26778887 4789999999999
Q ss_pred HHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHH
Q 012655 349 RYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAH 428 (459)
Q Consensus 349 r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~ 428 (459)
+..+++.+..+. +. .+. ...+..|++.+.| +.|.++.++..+.
T Consensus 164 ~~~~l~~~~~~~---~~-------------------------~~~--------~~~l~~L~~~~~g-n~r~L~~~l~~~~ 206 (226)
T TIGR03420 164 KIAALQSRAARR---GL-------------------------QLP--------DEVADYLLRHGSR-DMGSLMALLDALD 206 (226)
T ss_pred HHHHHHHHHHHc---CC-------------------------CCC--------HHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 999988765532 11 000 1236677777666 8899999888873
Q ss_pred -HhhcCCCCCCHHHHHHHH
Q 012655 429 -AALANPNGCDPSKFLLTV 446 (459)
Q Consensus 429 -a~~~~~~~it~~d~~~Al 446 (459)
+...+...+|.+.+.+.+
T Consensus 207 ~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 207 RASLAAKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHhCCCCCHHHHHHHh
Confidence 333466679988877655
No 91
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.52 E-value=2.9e-13 Score=138.00 Aligned_cols=245 Identities=22% Similarity=0.205 Sum_probs=144.9
Q ss_pred cCccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhc---CCCCccc-cCCcEEEEecCCCChHHHHHHHHHHHhcccccC
Q 012655 149 LPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEK---GVNPFLV-SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS 224 (459)
Q Consensus 149 lP~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~~---g~~~~~i-~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~ 224 (459)
.|..-...+-+.++|+++.++.+...+.+....-.. ...+..+ ....++||+||||||||++|+++|..++.+|
T Consensus 67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf-- 144 (413)
T TIGR00382 67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF-- 144 (413)
T ss_pred CHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe--
Confidence 454444455566799999999887776442221111 0000111 1235799999999999999999999998776
Q ss_pred CCCcceEEEEcccccc-ccccchh-hHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHH
Q 012655 225 RYPQCQLVEVNAHSLF-SKWFSES-GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL 302 (459)
Q Consensus 225 ~~~~~~~i~i~~~~l~-~~~~~e~-~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~l 302 (459)
..+++..+. ..|++.. +..+..+++.....+. ...+++|||||+|.+..++.....+.. -....+++.|
T Consensus 145 -------~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~-~a~~gIV~lDEIdkl~~~~~~~s~~~d-vsg~~vq~~L 215 (413)
T TIGR00382 145 -------AIADATTLTEAGYVGEDVENILLKLLQAADYDVE-KAQKGIIYIDEIDKISRKSENPSITRD-VSGEGVQQAL 215 (413)
T ss_pred -------EEechhhccccccccccHHHHHHHHHHhCcccHH-hcccceEEecccchhchhhcccccccc-ccchhHHHHH
Confidence 556666654 2465553 3333444332211111 135679999999999875432111111 1113688889
Q ss_pred HHHHHhhc-----------CCCCEEEEEecCCCCc---------------------------------------------
Q 012655 303 LTQMDKLK-----------SSPNVIILTTSNITAA--------------------------------------------- 326 (459)
Q Consensus 303 l~~l~~l~-----------~~~~viIi~Ttn~~~~--------------------------------------------- 326 (459)
|..|++.. +..+.++|.|+|....
T Consensus 216 L~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~d 295 (413)
T TIGR00382 216 LKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPED 295 (413)
T ss_pred HHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHH
Confidence 98886432 2346889999887100
Q ss_pred -----ccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHH
Q 012655 327 -----IDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHF 401 (459)
Q Consensus 327 -----ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 401 (459)
+.+.|++|++.++.+.+.+.++..+|+...+..+.+. +.+.... .+..+ .-.
T Consensus 296 l~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq----------------~~~~l~~-~gi~L------~~t 352 (413)
T TIGR00382 296 LVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQ----------------YQALFKM-DNVEL------DFE 352 (413)
T ss_pred HHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHH----------------HHHHhcc-CCeEE------EEC
Confidence 2366778888888888888888888887644332210 0000000 00000 001
Q ss_pred HHHHHHHHHH--ccCCChHHHhchHHHH
Q 012655 402 YKQLLEAAEA--CEGLSGRSLRKLPFLA 427 (459)
Q Consensus 402 ~~~L~~la~~--~~G~Sgr~L~~L~~~a 427 (459)
...+..||+. ...+.+|.|++++...
T Consensus 353 ~~a~~~Ia~~~~~~~~GAR~Lr~iie~~ 380 (413)
T TIGR00382 353 EEALKAIAKKALERKTGARGLRSIVEGL 380 (413)
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHh
Confidence 2236677776 3567889999988776
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.52 E-value=3e-13 Score=150.34 Aligned_cols=175 Identities=15% Similarity=0.211 Sum_probs=121.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc-CCCCcceEEEE
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQCQLVEV 234 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~~~i~i 234 (459)
+.++.++|.++..+++.+.+.. .. ..+++|+||||||||++++.+|+.+..... ....+..++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r------~~--------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR------RR--------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc------CC--------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 5678899998876666654432 11 134899999999999999999998843211 11234556667
Q ss_pred cccccc--ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 235 NAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 235 ~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
+...+. ..+.++....+..+++.+... ..++||||||++.+...+.+ . ......+.|...+ ..
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~----~~~~ILfIDEih~l~~~g~~---~----~~~d~~n~Lkp~l----~~ 314 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKAS----PQPIILFIDEAHTLIGAGGQ---A----GQGDAANLLKPAL----AR 314 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhc----CCCeEEEEeChHHhccCCCc---c----ccccHHHHhhHHh----hC
Confidence 666655 246677777888888877541 35789999999999875421 1 1112233343333 45
Q ss_pred CCEEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 313 PNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 313 ~~viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
+.+.+|++|+..+ ..|++|.+|| ..+.++.|+.+++.+|++.....+
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~ 366 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVL 366 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 7888888888643 3699999999 578999999999999987666554
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.52 E-value=4.2e-13 Score=128.20 Aligned_cols=182 Identities=14% Similarity=0.078 Sum_probs=119.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (459)
..++|+||+|||||+|++++++.+... +..+.+++..... .....+.+... ...+|+||
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~------~~~v~y~~~~~~~--------~~~~~~~~~~~-------~~dlliiD 104 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQR------GRAVGYVPLDKRA--------WFVPEVLEGME-------QLSLVCID 104 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEEHHHHh--------hhhHHHHHHhh-------hCCEEEEe
Confidence 459999999999999999999987521 1222333332211 01112222211 23689999
Q ss_pred hhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCC-EEEEEecCCCCc---ccHHHhccC--CeEEEeCCCCHHH
Q 012655 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN-VIILTTSNITAA---IDIAFVDRA--DIKAYVGPPTLQA 348 (459)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~-viIi~Ttn~~~~---ld~al~~R~--~~~i~~~~P~~~~ 348 (459)
|++.+..+ ......+++.++.....++ .+|+++++.+.. +.+.+++|+ +.++.+.+|+.++
T Consensus 105 di~~~~~~-------------~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 105 NIECIAGD-------------ELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred ChhhhcCC-------------HHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 99987542 2334556666766655555 567777777766 478999998 4899999999999
Q ss_pred HHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH-
Q 012655 349 RYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA- 427 (459)
Q Consensus 349 r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a- 427 (459)
+.++++...... |.. +. ...+..|++++.| +.|.+..++...
T Consensus 172 ~~~~l~~~a~~~---~~~-------------------------l~--------~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 172 KLQALQLRARLR---GFE-------------------------LP--------EDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred HHHHHHHHHHHc---CCC-------------------------CC--------HHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 999998755542 210 00 1237788998888 777777777665
Q ss_pred HHhhcCCCCCCHHHHHHHHH
Q 012655 428 HAALANPNGCDPSKFLLTVI 447 (459)
Q Consensus 428 ~a~~~~~~~it~~d~~~Al~ 447 (459)
++....+..+|.+.+.+++.
T Consensus 215 ~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 215 RASITAQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHhcCCCCCHHHHHHHHc
Confidence 34445566799888777653
No 94
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=3.6e-13 Score=148.25 Aligned_cols=165 Identities=18% Similarity=0.159 Sum_probs=110.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc------CCC----
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRY---- 226 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~---- 226 (459)
.|++|||++.+++.|..++.. ..+ +..+||+||+||||||++++||+.+...-. ..+
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~------~ri-------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDS------GRI-------NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHh------CCC-------CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 499999999999998887653 111 244899999999999999999999964211 001
Q ss_pred -------CcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHH
Q 012655 227 -------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299 (459)
Q Consensus 227 -------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~ 299 (459)
.+..++++++.+.. .-..++.+.+.+... .......|+||||+|.|.. ...
T Consensus 80 ~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~-p~~~~~KV~IIDEad~lt~---------------~a~ 137 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFA-PAESRYKIFIIDEAHMVTP---------------QGF 137 (824)
T ss_pred HHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhc-hhcCCceEEEEechhhcCH---------------HHH
Confidence 11223444432210 112334333332211 1124567999999999865 457
Q ss_pred HHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 300 ~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
|.||+.|+.. ..++++|.+|+..+.|-..+++|+ ..+.|..++.++..++++..+++
T Consensus 138 NaLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 138 NALLKIVEEP--PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred HHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHH
Confidence 8899998873 345555555566677888899998 78889999998888888877765
No 95
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.1e-13 Score=144.30 Aligned_cols=213 Identities=21% Similarity=0.254 Sum_probs=135.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcc-------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQC------- 229 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~------- 229 (459)
.|++++|++.+++.|.+.+.. ..+ +..+||+||+|+||||+|+++|+.+..........|
T Consensus 14 ~f~divGq~~v~~~L~~~i~~------~~~-------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQ------QRL-------HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHc------CCC-------CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 599999999999988887653 111 245799999999999999999999864321000001
Q ss_pred --------eEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 230 --------QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 230 --------~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
.++++++.+ ......++.+...+... .......|++|||+|.+.. ...|.
T Consensus 81 ~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~-p~~~~~kVvIIDEad~ls~---------------~a~na 138 (527)
T PRK14969 81 EIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYA-PTRGRFKVYIIDEVHMLSK---------------SAFNA 138 (527)
T ss_pred HHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhC-cccCCceEEEEcCcccCCH---------------HHHHH
Confidence 233333321 11123345555444321 1123457999999987754 45788
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFS 381 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 381 (459)
|++.|+. +.+.+++|.+|+.+..+...+++|| ..+.|.+++.++..+.+...+++. |+-
T Consensus 139 LLK~LEe--pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~e---gi~--------------- 197 (527)
T PRK14969 139 MLKTLEE--PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQE---NIP--------------- 197 (527)
T ss_pred HHHHHhC--CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHc---CCC---------------
Confidence 9999887 3345555555555667777789998 888999999998888888777652 110
Q ss_pred HHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCCCHHHHHHHH
Q 012655 382 ILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLTV 446 (459)
Q Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~~Al 446 (459)
+. ...+..+++.+.| +.|+...+...+.+. +...++.+++...+
T Consensus 198 ----------~~--------~~al~~la~~s~G-slr~al~lldqai~~--~~~~I~~~~v~~~~ 241 (527)
T PRK14969 198 ----------FD--------ATALQLLARAAAG-SMRDALSLLDQAIAY--GGGTVNESEVRAML 241 (527)
T ss_pred ----------CC--------HHHHHHHHHHcCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHHH
Confidence 00 1236677777777 566666666555443 35556666655543
No 96
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.52 E-value=5.3e-13 Score=134.56 Aligned_cols=190 Identities=16% Similarity=0.221 Sum_probs=125.8
Q ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCC--ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCC
Q 012655 150 PAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNP--FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (459)
Q Consensus 150 P~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~--~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (459)
|..-...+-+.++|+++.|+.+...+.+.. .+.++++ .....+++++|+||||||||++|+++|+.++.+|
T Consensus 3 P~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~--~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f----- 75 (441)
T TIGR00390 3 PREIVAELDKYIIGQDNAKKSVAIALRNRY--RRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF----- 75 (441)
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHhhh--hhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE-----
Confidence 444445566779999999999987766532 2212211 0111247899999999999999999999998877
Q ss_pred cceEEEEcccccc-ccccc-hhhHHHHHHHHHHHH---------------------------------------------
Q 012655 228 QCQLVEVNAHSLF-SKWFS-ESGKLVAKLFQKIQE--------------------------------------------- 260 (459)
Q Consensus 228 ~~~~i~i~~~~l~-~~~~~-e~~~~v~~~f~~~~~--------------------------------------------- 260 (459)
+.+++..+. ..|.+ +....++.+|..+..
T Consensus 76 ----i~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~ 151 (441)
T TIGR00390 76 ----IKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPES 151 (441)
T ss_pred ----EEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHH
Confidence 666666554 24554 233334444333300
Q ss_pred --------------------------------------------------------------------------------
Q 012655 261 -------------------------------------------------------------------------------- 260 (459)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (459)
T Consensus 152 ~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~l 231 (441)
T TIGR00390 152 AREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKL 231 (441)
T ss_pred HHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhc
Confidence
Q ss_pred ---------HHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--------CCCCEEEEEecC-
Q 012655 261 ---------MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--------SSPNVIILTTSN- 322 (459)
Q Consensus 261 ---------~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~--------~~~~viIi~Ttn- 322 (459)
.+....+..||||||||+++.+..+ .+-.-....+++.||..+++-. ...++++|++..
T Consensus 232 id~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~---~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF 308 (441)
T TIGR00390 232 VDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGES---SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAF 308 (441)
T ss_pred cChHHHHHHHHHHHHcCCEEEEEchhhhcccCCC---CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCc
Confidence 0001135578999999999876521 1111233568888999888632 235677776643
Q ss_pred ---CCCcccHHHhccCCeEEEeCCCCHHHHHHHH
Q 012655 323 ---ITAAIDIAFVDRADIKAYVGPPTLQARYEIL 353 (459)
Q Consensus 323 ---~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il 353 (459)
.|..+=+.|.+||..++.+.+++.++...||
T Consensus 309 ~~~kp~DlIPEl~GR~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 309 QLAKPSDLIPELQGRFPIRVELQALTTDDFERIL 342 (441)
T ss_pred CCCChhhccHHHhCccceEEECCCCCHHHHHHHh
Confidence 3556778899999999999999999999988
No 97
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.52 E-value=4e-13 Score=134.14 Aligned_cols=265 Identities=14% Similarity=0.162 Sum_probs=154.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcc-------cccCCCCcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI-------RFSSRYPQC 229 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~-------~~~~~~~~~ 229 (459)
-|..++|++++|..|...+..+ + -.+++|.||+|||||+++|++++.+.. +|. .++..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p------~--------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~ 79 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDP------K--------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSD 79 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCC------C--------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCC
Confidence 4889999999999988765432 1 246999999999999999999998742 121 11111
Q ss_pred e-------------------------EEEEccccccccccchhhHHHHHHHHHHHHH----HHhcccchhhhhhhhHhHH
Q 012655 230 Q-------------------------LVEVNAHSLFSKWFSESGKLVAKLFQKIQEM----VEEENNLVFVLIDEVESLA 280 (459)
Q Consensus 230 ~-------------------------~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~----~~~~~~~~illIDEid~l~ 280 (459)
. ++.+....-.+..+|. -.+...+...... +-......+|++||++.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~--iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGT--IDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCc--ccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 0 0000000000000010 0011111111000 0011245799999999886
Q ss_pred HhhhhccCCCCCCchHHHHHHHHHHHHhh-----------cCCCCEEEEEecCCCC-cccHHHhccCCeEEEeCCCC-HH
Q 012655 281 AARKAALSGSEPSDSIRVVNALLTQMDKL-----------KSSPNVIILTTSNITA-AIDIAFVDRADIKAYVGPPT-LQ 347 (459)
Q Consensus 281 ~~r~~~ls~~e~~~~~~~~~~ll~~l~~l-----------~~~~~viIi~Ttn~~~-~ld~al~~R~~~~i~~~~P~-~~ 347 (459)
. ..++.|+..|+.- ....++++++|.|..+ .+.+++.+||...+.++.|+ .+
T Consensus 158 ~---------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~ 222 (350)
T CHL00081 158 D---------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPE 222 (350)
T ss_pred H---------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChH
Confidence 5 4556677766531 1234689999999765 58999999999999999998 58
Q ss_pred HHHHHHHHHHHHHH-HhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHH
Q 012655 348 ARYEILRSCLQELI-RTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFL 426 (459)
Q Consensus 348 ~r~~Il~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~ 426 (459)
.+.+|++....... ...........+......+....+....-.+.+ ..-..+..++..+.--|.|.--.+...
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~-----~~~~yi~~l~~~~~~~s~Ra~i~l~ra 297 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDY-----DLRVKISQICSELDVDGLRGDIVTNRA 297 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCH-----HHHHHHHHHHHHHCCCCChHHHHHHHH
Confidence 99999988642100 000000000001111112222222221111111 122346667776665688888888877
Q ss_pred H--HHhhcCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 012655 427 A--HAALANPNGCDPSKFLLTVIDTARKERSELP 458 (459)
Q Consensus 427 a--~a~~~~~~~it~~d~~~Al~~~~~~~~~~~~ 458 (459)
| +|...++..++.+|+..+...+..+.....|
T Consensus 298 ArA~Aal~GR~~V~pdDv~~~a~~vL~HR~~~~p 331 (350)
T CHL00081 298 AKALAAFEGRTEVTPKDIFKVITLCLRHRLRKDP 331 (350)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcCCc
Confidence 7 7778899999999999999888877765333
No 98
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=3.6e-13 Score=143.58 Aligned_cols=211 Identities=21% Similarity=0.252 Sum_probs=137.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCC----------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY---------- 226 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~---------- 226 (459)
.|++++|++.+.+.|.+.+.. +-- +..+||+||+|||||++|+.+|+.+...-....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~-------~~~------~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQ-------GKI------SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 499999999999999888764 111 356899999999999999999999864321000
Q ss_pred -----CcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 227 -----PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 227 -----~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
.+..++++++.+ ......++.+...+.... ......|++|||+|.+.. ...++
T Consensus 81 ~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p-~~~~~kViIIDE~~~Lt~---------------~a~na 138 (559)
T PRK05563 81 AITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAP-SEAKYKVYIIDEVHMLST---------------GAFNA 138 (559)
T ss_pred HHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCc-ccCCeEEEEEECcccCCH---------------HHHHH
Confidence 011234443321 122344566665554321 123567999999998754 45788
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFS 381 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 381 (459)
|++.++. +...+++|.+|+.+..+.+.+++|+ ..+.|.+|+..+...+++..+++. |.
T Consensus 139 LLKtLEe--pp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~e---gi---------------- 196 (559)
T PRK05563 139 LLKTLEE--PPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKE---GI---------------- 196 (559)
T ss_pred HHHHhcC--CCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHc---CC----------------
Confidence 9988876 3445555555666788999999999 567899999988888888877652 11
Q ss_pred HHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCCCHHHHHH
Q 012655 382 ILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLL 444 (459)
Q Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~~ 444 (459)
.+. ...+..+++.+.| +.|+...+...+.+. +...+|.+++..
T Consensus 197 ---------~i~--------~~al~~ia~~s~G-~~R~al~~Ldq~~~~--~~~~It~~~V~~ 239 (559)
T PRK05563 197 ---------EYE--------DEALRLIARAAEG-GMRDALSILDQAISF--GDGKVTYEDALE 239 (559)
T ss_pred ---------CCC--------HHHHHHHHHHcCC-CHHHHHHHHHHHHHh--ccCCCCHHHHHH
Confidence 000 1236677777777 666666666555333 234566665443
No 99
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.51 E-value=2e-13 Score=128.91 Aligned_cols=142 Identities=23% Similarity=0.347 Sum_probs=99.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDE 275 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDE 275 (459)
.++||||+|+|||+|++++++++... .++..++++++.++...+...... .....+........+++||+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~----~~~~~v~y~~~~~f~~~~~~~~~~------~~~~~~~~~~~~~DlL~iDD 105 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQ----HPGKRVVYLSAEEFIREFADALRD------GEIEEFKDRLRSADLLIIDD 105 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHH----CTTS-EEEEEHHHHHHHHHHHHHT------TSHHHHHHHHCTSSEEEEET
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhc----cccccceeecHHHHHHHHHHHHHc------ccchhhhhhhhcCCEEEEec
Confidence 38999999999999999999987432 355677888887765433221111 01111111123568999999
Q ss_pred hHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccC--CeEEEeCCCCHHHHH
Q 012655 276 VESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQARY 350 (459)
Q Consensus 276 id~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~--~~~i~~~~P~~~~r~ 350 (459)
++.+..+ ......++..++.+...++.+|+++...|..+ ++.+.+|+ +..+.+.+|+.+.|.
T Consensus 106 i~~l~~~-------------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 106 IQFLAGK-------------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRR 172 (219)
T ss_dssp GGGGTTH-------------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHH
T ss_pred chhhcCc-------------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHH
Confidence 9988653 35678888999988888888888887777665 77888886 679999999999999
Q ss_pred HHHHHHHHHH
Q 012655 351 EILRSCLQEL 360 (459)
Q Consensus 351 ~Il~~~l~~~ 360 (459)
+|++......
T Consensus 173 ~il~~~a~~~ 182 (219)
T PF00308_consen 173 RILQKKAKER 182 (219)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988863
No 100
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.51 E-value=3.4e-13 Score=134.60 Aligned_cols=264 Identities=16% Similarity=0.167 Sum_probs=148.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhc-------ccccCC--C--
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS-------IRFSSR--Y-- 226 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~-------~~~~~~--~-- 226 (459)
|..++|++++|..|+-.+..+ + ..+++|.|+||+||||+++++++.+. .++... .
T Consensus 3 f~~ivgq~~~~~al~~~~~~~------~--------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP------K--------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC------C--------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 667999999998886654321 1 35699999999999999999999983 222100 0
Q ss_pred ---CcceE-----------------EEEccccccccccchhhHHHHHHHH-----HHHHHHHhcccchhhhhhhhHhHHH
Q 012655 227 ---PQCQL-----------------VEVNAHSLFSKWFSESGKLVAKLFQ-----KIQEMVEEENNLVFVLIDEVESLAA 281 (459)
Q Consensus 227 ---~~~~~-----------------i~i~~~~l~~~~~~e~~~~v~~~f~-----~~~~~~~~~~~~~illIDEid~l~~ 281 (459)
.+|.. +.+.....-...+|.. .+...+. .-...+ ......++||||++.+..
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL-~~A~~GvL~lDEi~~L~~ 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLL-ARANRGILYIDEVNLLED 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcc-eeccCCEEEecChHhCCH
Confidence 00010 0000000000111110 0000000 000011 112447899999998754
Q ss_pred hhhhccCCCCCCchHHHHHHHHHHHHhh-----------cCCCCEEEEEecCCCC-cccHHHhccCCeEEEeCCCCH-HH
Q 012655 282 ARKAALSGSEPSDSIRVVNALLTQMDKL-----------KSSPNVIILTTSNITA-AIDIAFVDRADIKAYVGPPTL-QA 348 (459)
Q Consensus 282 ~r~~~ls~~e~~~~~~~~~~ll~~l~~l-----------~~~~~viIi~Ttn~~~-~ld~al~~R~~~~i~~~~P~~-~~ 348 (459)
..++.|+..|+.- ....++++++|+|..+ .+.+++++||...+.+++|.. ++
T Consensus 146 ---------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 146 ---------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVEL 210 (337)
T ss_pred ---------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHH
Confidence 4566677776531 1234689999999765 589999999999999999986 88
Q ss_pred HHHHHHHHHHHHHH-hccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 349 RYEILRSCLQELIR-TGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 349 r~~Il~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
+.+|++.....-.. ...+.............+....+....-.+.+ ..-..+..++..+..-|.|.-..+...|
T Consensus 211 r~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d-----~~~~~i~~l~~~~~~~s~Ra~i~l~raA 285 (337)
T TIGR02030 211 RVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPY-----DVLVKVAELCAELDVDGLRGELTLNRAA 285 (337)
T ss_pred HHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCH-----HHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 89999875332000 00000000000000011111111111111111 1122455666666655778887777777
Q ss_pred --HHhhcCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 012655 428 --HAALANPNGCDPSKFLLTVIDTARKERSELP 458 (459)
Q Consensus 428 --~a~~~~~~~it~~d~~~Al~~~~~~~~~~~~ 458 (459)
+|...++..++.+|+..+...+..+...-.|
T Consensus 286 rA~Aal~GR~~V~~dDv~~~a~~vL~HR~~~~p 318 (337)
T TIGR02030 286 KALAAFEGRTEVTVDDIRRVAVLALRHRLRKDP 318 (337)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHhCcCCc
Confidence 7778899999999999999888877765444
No 101
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.2e-14 Score=147.39 Aligned_cols=164 Identities=24% Similarity=0.356 Sum_probs=114.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 160 ~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+=.|.+++|+++++|+.-..+... .. |..++|+||||+|||+|+++||+.++..| +.+....+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~--~k------GpILcLVGPPGVGKTSLgkSIA~al~Rkf---------vR~sLGGv 386 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK--LK------GPILCLVGPPGVGKTSLGKSIAKALGRKF---------VRISLGGV 386 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc--CC------CcEEEEECCCCCCchhHHHHHHHHhCCCE---------EEEecCcc
Confidence 345668899999999876444332 22 56799999999999999999999999888 43433222
Q ss_pred c---------ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh-
Q 012655 240 F---------SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL- 309 (459)
Q Consensus 240 ~---------~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l- 309 (459)
. -.|.|.....+-+-..++. ....+++|||||.+..... |+| ..+||..||-=
T Consensus 387 rDEAEIRGHRRTYIGamPGrIiQ~mkka~------~~NPv~LLDEIDKm~ss~r-----GDP------aSALLEVLDPEQ 449 (782)
T COG0466 387 RDEAEIRGHRRTYIGAMPGKIIQGMKKAG------VKNPVFLLDEIDKMGSSFR-----GDP------ASALLEVLDPEQ 449 (782)
T ss_pred ccHHHhccccccccccCChHHHHHHHHhC------CcCCeEEeechhhccCCCC-----CCh------HHHHHhhcCHhh
Confidence 1 1233333222222222222 2335889999999976432 222 24556655521
Q ss_pred ------------cCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHH
Q 012655 310 ------------KSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQ 358 (459)
Q Consensus 310 ------------~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~ 358 (459)
.+-+++++|+|+|..+.++.++++|+ .+|.+.-+++++..+|.+.++-
T Consensus 450 N~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 450 NNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred cCchhhccccCccchhheEEEeecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 12257999999999999999999999 8899999999999999998873
No 102
>PRK06893 DNA replication initiation factor; Validated
Probab=99.50 E-value=4e-13 Score=127.90 Aligned_cols=181 Identities=11% Similarity=0.109 Sum_probs=115.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (459)
..++||||||||||+|++++|+++.... ..+ .++..... ......++... ....+++||
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~----~~~--~y~~~~~~--------~~~~~~~~~~~-------~~~dlLilD 98 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQ----RTA--IYIPLSKS--------QYFSPAVLENL-------EQQDLVCLD 98 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC----CCe--EEeeHHHh--------hhhhHHHHhhc-------ccCCEEEEe
Confidence 4589999999999999999999874321 112 33332211 00111122221 245799999
Q ss_pred hhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEE-EEEecCCCCcc---cHHHhccC--CeEEEeCCCCHHH
Q 012655 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI-ILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQA 348 (459)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~vi-Ii~Ttn~~~~l---d~al~~R~--~~~i~~~~P~~~~ 348 (459)
|++.+.... .....++..++.....++.+ |++++..|..+ .+.+.+|+ +..+.+++|+.++
T Consensus 99 Di~~~~~~~-------------~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~ 165 (229)
T PRK06893 99 DLQAVIGNE-------------EWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQ 165 (229)
T ss_pred ChhhhcCCh-------------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHH
Confidence 999875422 22345777777766655555 45555556665 37788875 5788999999999
Q ss_pred HHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH-
Q 012655 349 RYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA- 427 (459)
Q Consensus 349 r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a- 427 (459)
+.+|++...... +. . +. ...+..|++++.| +.|.+..++...
T Consensus 166 ~~~iL~~~a~~~---~l----------~---------------l~--------~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 166 KIIVLQRNAYQR---GI----------E---------------LS--------DEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred HHHHHHHHHHHc---CC----------C---------------CC--------HHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 999999887752 11 0 00 1237788888887 666666666544
Q ss_pred HHhhcCCCCCCHHHHHHHH
Q 012655 428 HAALANPNGCDPSKFLLTV 446 (459)
Q Consensus 428 ~a~~~~~~~it~~d~~~Al 446 (459)
.+....+..+|...+.+++
T Consensus 209 ~~~~~~~~~it~~~v~~~L 227 (229)
T PRK06893 209 KASLQAQRKLTIPFVKEIL 227 (229)
T ss_pred HHHHhcCCCCCHHHHHHHh
Confidence 3333444579988877765
No 103
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.50 E-value=8.2e-13 Score=133.26 Aligned_cols=191 Identities=18% Similarity=0.254 Sum_probs=126.4
Q ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcc--ccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCC
Q 012655 150 PAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFL--VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (459)
Q Consensus 150 P~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~--i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (459)
|..-...+-..++|++..|+.+...+.... .+.++.+.. -..+.++||+||||||||++|++||+.++.+|
T Consensus 6 p~~I~~~Ld~~IiGQe~AkkalavAl~~~~--~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f----- 78 (443)
T PRK05201 6 PREIVSELDKYIIGQDDAKRAVAIALRNRW--RRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF----- 78 (443)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHHH--HHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh-----
Confidence 444444555679999999999988776532 222222110 01247899999999999999999999998877
Q ss_pred cceEEEEccccccc-cccc-hhhHHHHHHHHHHH----------------------------------------------
Q 012655 228 QCQLVEVNAHSLFS-KWFS-ESGKLVAKLFQKIQ---------------------------------------------- 259 (459)
Q Consensus 228 ~~~~i~i~~~~l~~-~~~~-e~~~~v~~~f~~~~---------------------------------------------- 259 (459)
+.+++..+.. .|.+ .....++.+|..+.
T Consensus 79 ----i~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~ 154 (443)
T PRK05201 79 ----IKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISA 154 (443)
T ss_pred ----eeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhH
Confidence 6666655553 4544 22233333333330
Q ss_pred --------------------------------------------------------------------------------
Q 012655 260 -------------------------------------------------------------------------------- 259 (459)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (459)
T Consensus 155 ~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~li 234 (443)
T PRK05201 155 TRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLI 234 (443)
T ss_pred HHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhcc
Confidence
Q ss_pred -------HHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh--------cCCCCEEEEEecC--
Q 012655 260 -------EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--------KSSPNVIILTTSN-- 322 (459)
Q Consensus 260 -------~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l--------~~~~~viIi~Ttn-- 322 (459)
+.+....+..||||||||+++....+ ++.+ -....+++.||..+++- ....++++|++--
T Consensus 235 d~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~--~~~D-vS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~ 311 (443)
T PRK05201 235 DMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS--SGPD-VSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFH 311 (443)
T ss_pred ChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC--CCCC-CCccchhcccccccccceeeecceeEECCceeEEecCCcC
Confidence 00011124578999999999986432 2222 23356888899988863 2335677776643
Q ss_pred --CCCcccHHHhccCCeEEEeCCCCHHHHHHHHH
Q 012655 323 --ITAAIDIAFVDRADIKAYVGPPTLQARYEILR 354 (459)
Q Consensus 323 --~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~ 354 (459)
.+..+-+.|.+||..++.+.+++.+....||.
T Consensus 312 ~~kp~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 312 VSKPSDLIPELQGRFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred CCChhhccHHHhCccceEEECCCCCHHHHHHHhc
Confidence 35567788999999999999999999999983
No 104
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1.1e-12 Score=141.03 Aligned_cols=165 Identities=21% Similarity=0.370 Sum_probs=113.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC----CCcc---
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR----YPQC--- 229 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~----~~~~--- 229 (459)
.|++++|++.+.+.|...+... .+ ...+||+||+|+|||++|+++|+.+....... ...|
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~------rl-------~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSN------KI-------SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 5999999999999888877531 11 24589999999999999999999986432100 0001
Q ss_pred -----eEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHH
Q 012655 230 -----QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (459)
Q Consensus 230 -----~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (459)
.++++++.+ ..+...++.+.+.+.... ......|++|||++.+.. ...++|+.
T Consensus 83 ~~~~~Dvieidaas------n~~vd~IReLie~~~~~P-~~g~~KV~IIDEa~~LT~---------------~A~NALLK 140 (725)
T PRK07133 83 VNNSLDIIEMDAAS------NNGVDEIRELIENVKNLP-TQSKYKIYIIDEVHMLSK---------------SAFNALLK 140 (725)
T ss_pred hcCCCcEEEEeccc------cCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhCCH---------------HHHHHHHH
Confidence 112222110 011234666665554322 124557999999998754 45788999
Q ss_pred HHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 305 QMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 305 ~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
.|+. +.+.+++|.+|+.++.+.+.+++|| ..+.+.+++.++..++++..+.+
T Consensus 141 tLEE--PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~k 192 (725)
T PRK07133 141 TLEE--PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEK 192 (725)
T ss_pred Hhhc--CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHH
Confidence 9887 3445666666667788988999999 58899999999988888877665
No 105
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.49 E-value=5.6e-13 Score=146.73 Aligned_cols=164 Identities=22% Similarity=0.305 Sum_probs=112.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
++..|.+++|+++++++......... .+..++|+||||+|||++++.+|+.++.++ +.++...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~--------~g~~i~l~GppG~GKTtl~~~ia~~l~~~~---------~~i~~~~ 384 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKI--------KGPILCLVGPPGVGKTSLGQSIAKATGRKY---------VRMALGG 384 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccC--------CCceEEEECCCCCCHHHHHHHHHHHhCCCE---------EEEEcCC
Confidence 35888999999999988753322211 256799999999999999999999998766 3343332
Q ss_pred cc---------ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh-
Q 012655 239 LF---------SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK- 308 (459)
Q Consensus 239 l~---------~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~- 308 (459)
.. ..|.+.....+...+..+. ....+++|||+|.+....+ + ....+|+..++.
T Consensus 385 ~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~------~~~~villDEidk~~~~~~-----g------~~~~aLlevld~~ 447 (784)
T PRK10787 385 VRDEAEIRGHRRTYIGSMPGKLIQKMAKVG------VKNPLFLLDEIDKMSSDMR-----G------DPASALLEVLDPE 447 (784)
T ss_pred CCCHHHhccchhccCCCCCcHHHHHHHhcC------CCCCEEEEEChhhcccccC-----C------CHHHHHHHHhccc
Confidence 21 1122222222222222211 1335899999999865321 1 134567777663
Q ss_pred ----h--------cCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHH
Q 012655 309 ----L--------KSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQ 358 (459)
Q Consensus 309 ----l--------~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~ 358 (459)
+ .+-+++++|+|+|.. .++++|++|+ .++.+..++.++..+|.+.++.
T Consensus 448 ~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 448 QNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred cEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 1 123789999999987 5999999999 5788999999999999999995
No 106
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.3e-14 Score=148.09 Aligned_cols=174 Identities=24% Similarity=0.348 Sum_probs=115.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
++=.|.+++|+++++|+.-..+... . .|+.++|+||||+|||+++|+||..++..|.+ +.+.+-.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs---~-----qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR-------fSvGG~t 475 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGS---V-----QGKILCFVGPPGVGKTSIAKSIARALNRKFFR-------FSVGGMT 475 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhccc---C-----CCcEEEEeCCCCCCcccHHHHHHHHhCCceEE-------Eeccccc
Confidence 3455678899999999875333221 1 27889999999999999999999999988844 2222211
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHh-cccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh---------
Q 012655 239 LFSKWFSESGKLVAKLFQKIQEMVEE-ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK--------- 308 (459)
Q Consensus 239 l~~~~~~e~~~~v~~~f~~~~~~~~~-~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~--------- 308 (459)
-....-|.-+..++.|-.++.+.+.. .....+++|||||++.... .|+| ..+||..||-
T Consensus 476 DvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~-----qGDP------asALLElLDPEQNanFlDH 544 (906)
T KOG2004|consen 476 DVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGH-----QGDP------ASALLELLDPEQNANFLDH 544 (906)
T ss_pred cHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCC-----CCCh------HHHHHHhcChhhccchhhh
Confidence 11111122222232222232222221 1234589999999997422 1222 2345555542
Q ss_pred ----hcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 309 ----LKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 309 ----l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
-.+-+++++|||.|..+.|++++++|+ .+|.++-+..++...|.+.++-.
T Consensus 545 YLdVp~DLSkVLFicTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 545 YLDVPVDLSKVLFICTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred ccccccchhheEEEEeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhh
Confidence 122367999999999999999999999 88999999999999999998854
No 107
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.49 E-value=7.6e-13 Score=131.88 Aligned_cols=262 Identities=18% Similarity=0.231 Sum_probs=143.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcc-------cccCCCCc-
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI-------RFSSRYPQ- 228 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~-------~~~~~~~~- 228 (459)
-|..++|++.+++.+.-.+.. .| ..++||.||||+||||+++++++.+.. ++......
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~------~~--------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAID------PG--------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhc------cC--------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 388999999999887754321 12 145999999999999999999999842 11100000
Q ss_pred ce-EEEEccccccc---------------cccchhh--HHH---HHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhcc
Q 012655 229 CQ-LVEVNAHSLFS---------------KWFSESG--KLV---AKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAAL 287 (459)
Q Consensus 229 ~~-~i~i~~~~l~~---------------~~~~e~~--~~v---~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~l 287 (459)
+. ........+.. ..+|... ..+ ...|+ ...+ ......+|++||++.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~--~G~l-~~A~~GiL~lDEInrl~~------ 142 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFE--PGLL-ARANRGYLYIDEVNLLED------ 142 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeec--CCce-EEcCCCeEEecChHhCCH------
Confidence 00 00000000000 0111000 000 00011 0000 012346899999998754
Q ss_pred CCCCCCchHHHHHHHHHHHHhhc-----------CCCCEEEEEecCCCC-cccHHHhccCCeEEEeCCCCH-HHHHHHHH
Q 012655 288 SGSEPSDSIRVVNALLTQMDKLK-----------SSPNVIILTTSNITA-AIDIAFVDRADIKAYVGPPTL-QARYEILR 354 (459)
Q Consensus 288 s~~e~~~~~~~~~~ll~~l~~l~-----------~~~~viIi~Ttn~~~-~ld~al~~R~~~~i~~~~P~~-~~r~~Il~ 354 (459)
..++.|+..|+.-. ....+++++|.|..+ .+.+++++||...+.+++|.. ++|.+|++
T Consensus 143 ---------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 143 ---------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred ---------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence 55677777775321 235689999999755 589999999999999998877 88999998
Q ss_pred HHHHHHHH-hccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhh
Q 012655 355 SCLQELIR-TGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAAL 431 (459)
Q Consensus 355 ~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~ 431 (459)
.....-.. .................+....+....-.+.+ ..-..+..++..+.--|.|.--.|...| +|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~-----~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l 288 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPN-----TVLHDCAALCIALGSDGLRGELTLLRAARALAAF 288 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCH-----HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHH
Confidence 85432100 00000000000111112222222111111111 1222455565554433555555577666 7778
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhh
Q 012655 432 ANPNGCDPSKFLLTVIDTARKERS 455 (459)
Q Consensus 432 ~~~~~it~~d~~~Al~~~~~~~~~ 455 (459)
.++..++.+|+..+......+...
T Consensus 289 ~Gr~~V~~~Di~~~~~~vl~hR~~ 312 (334)
T PRK13407 289 EGAEAVGRSHLRSVATMALSHRLR 312 (334)
T ss_pred cCCCeeCHHHHHHHHHHhhhhhcc
Confidence 899999999998887666555443
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=6.8e-13 Score=140.73 Aligned_cols=165 Identities=19% Similarity=0.223 Sum_probs=110.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC------C----
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR------Y---- 226 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~------~---- 226 (459)
.|++++|++.+++.|.+++.. ..+ ...+||+||+|+||||+|+.+|+.+....... .
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~------~ri-------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQE------NRV-------APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHc------CCC-------CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 489999999999998887753 111 13589999999999999999999996421000 0
Q ss_pred -----CcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 227 -----PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 227 -----~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
.+..++++++.+- ..-..++.+.+.+... .......|++|||+|.+.. ..++.
T Consensus 81 ~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~-p~~g~~kVIIIDEad~Lt~---------------~a~na 138 (624)
T PRK14959 81 KVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYA-PMEGRYKVFIIDEAHMLTR---------------EAFNA 138 (624)
T ss_pred HHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhh-hhcCCceEEEEEChHhCCH---------------HHHHH
Confidence 1112344443211 0112233332222221 1223557999999998854 44688
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
|++.|+. ..+++++|.+|+.+..+...+++|+ ..+.|++++.++..++++..+.+
T Consensus 139 LLk~LEE--P~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 139 LLKTLEE--PPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred HHHHhhc--cCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHH
Confidence 8888876 3356667677777778888899998 57789999999998888876654
No 109
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=8.4e-13 Score=141.34 Aligned_cols=165 Identities=20% Similarity=0.282 Sum_probs=113.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC------C----
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR------Y---- 226 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~------~---- 226 (459)
.|++++|++++++.|.+++.. |-- +..+||+||+|+||||+++++|+.+...-... .
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~-------~~~------~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDT-------GRV------AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 599999999999999888753 211 24589999999999999999999986421100 0
Q ss_pred -----CcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 227 -----PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 227 -----~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
....++++++.+. .....++.+...+.... ......|++|||+|.+.. ...|.
T Consensus 81 ~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p-~~~~~KVvIIdev~~Lt~---------------~a~na 138 (576)
T PRK14965 81 EITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLP-SRSRYKIFIIDEVHMLST---------------NAFNA 138 (576)
T ss_pred HHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhcc-ccCCceEEEEEChhhCCH---------------HHHHH
Confidence 0112344443221 11234555555443321 123457999999998754 45789
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
|++.|+. +.+++++|.+|+.++.+...+++|+ ..+.|..++..+....+...+++
T Consensus 139 LLk~LEe--pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~ 193 (576)
T PRK14965 139 LLKTLEE--PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQ 193 (576)
T ss_pred HHHHHHc--CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHH
Confidence 9999887 3456666666677788999999998 68889999988888887777765
No 110
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.48 E-value=8.6e-13 Score=143.64 Aligned_cols=154 Identities=21% Similarity=0.290 Sum_probs=103.2
Q ss_pred hhhhhhhhhhHHH---HHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEE
Q 012655 157 MWESLIYESGLKQ---RLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (459)
Q Consensus 157 ~~~~li~~~~~k~---~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (459)
.+++++|++.+.. .|.+.+.. .. ...++|+|||||||||+|+++++.++.++ +.
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~------~~--------~~slLL~GPpGtGKTTLA~aIA~~~~~~f---------~~ 82 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKA------DR--------VGSLILYGPPGVGKTTLARIIANHTRAHF---------SS 82 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhc------CC--------CceEEEECCCCCCHHHHHHHHHHHhcCcc---------ee
Confidence 4789999988764 34443321 11 13489999999999999999999886554 55
Q ss_pred EccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCC
Q 012655 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (459)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~ 313 (459)
+++... ..+.++..+..+...........++||||+|.+... ..+.|+..++ .+
T Consensus 83 lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~---------------qQdaLL~~lE----~g 136 (725)
T PRK13341 83 LNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA---------------QQDALLPWVE----NG 136 (725)
T ss_pred ehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH---------------HHHHHHHHhc----Cc
Confidence 655321 112344444444333332235579999999988542 2345555543 35
Q ss_pred CEEEEEec--CCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 314 NVIILTTS--NITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 314 ~viIi~Tt--n~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
.+++|++| |....+++++++|+ ..+.+++++.+++..+++..+...
T Consensus 137 ~IiLI~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 137 TITLIGATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred eEEEEEecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHH
Confidence 56666544 33356789999997 678899999999999999988753
No 111
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.48 E-value=4.8e-12 Score=126.24 Aligned_cols=158 Identities=21% Similarity=0.282 Sum_probs=106.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.+++++|++.+++.+..++.. |-- +..++|+||||+|||++++++++.++.++ +++++
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~-------~~~------~~~lll~G~~G~GKT~la~~l~~~~~~~~---------~~i~~ 76 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKK-------GRI------PNMLLHSPSPGTGKTTVAKALCNEVGAEV---------LFVNG 76 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhc-------CCC------CeEEEeeCcCCCCHHHHHHHHHHHhCccc---------eEecc
Confidence 488999999999998887652 221 24577799999999999999999886443 66777
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEE
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~vi 316 (459)
.+ .. . ..++...............+.+++|||+|.+.. ....+.+.+.++.. .+++.
T Consensus 77 ~~--~~-~----~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~~L~~~le~~--~~~~~ 133 (316)
T PHA02544 77 SD--CR-I----DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------------ADAQRHLRSFMEAY--SKNCS 133 (316)
T ss_pred Cc--cc-H----HHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------------HHHHHHHHHHHHhc--CCCce
Confidence 55 11 1 111111111111111113568999999987722 12234444555543 34566
Q ss_pred EEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 317 ILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 317 Ii~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
+|.|+|....+.+++++|| ..+.++.|+.+++.++++..+..+
T Consensus 134 ~Ilt~n~~~~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~ 176 (316)
T PHA02544 134 FIITANNKNGIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRC 176 (316)
T ss_pred EEEEcCChhhchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 7778888888999999999 578899999999999888766654
No 112
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.47 E-value=1.5e-12 Score=131.99 Aligned_cols=165 Identities=21% Similarity=0.320 Sum_probs=111.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC-----------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR----------- 225 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~----------- 225 (459)
.|++++|++.+++.|.+.+.. |-- +..+||+||||+|||++++++++.+...-...
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~-------~~~------~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~ 78 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKN-------GRI------AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCK 78 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 599999999999988887653 211 35689999999999999999999985321000
Q ss_pred ----CCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 226 ----YPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 226 ----~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
..+..++.+++.. ......++.+++.+.... ......+++|||+|.+.. ...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p-~~~~~~vviidea~~l~~---------------~~~~~ 136 (355)
T TIGR02397 79 EINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAP-SSGKYKVYIIDEVHMLSK---------------SAFNA 136 (355)
T ss_pred HHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCc-ccCCceEEEEeChhhcCH---------------HHHHH
Confidence 0012234444321 111233555555544321 123456999999987743 34677
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
+++.++. ....+++|.+++.+..+.+++.+|+ ..+.+++|+..+..++++..+++
T Consensus 137 Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 137 LLKTLEE--PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred HHHHHhC--CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHH
Confidence 8888765 3345565556677777888899998 67889999999999999988876
No 113
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.46 E-value=3.8e-12 Score=136.69 Aligned_cols=178 Identities=17% Similarity=0.259 Sum_probs=110.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc-CCCCcceEEEEccc
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQCQLVEVNAH 237 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~~~i~i~~~ 237 (459)
+.|.+.++-.+.|..++...+. |-.+ +..++|+|+||||||++++.+.+++..... ...+...+++|||.
T Consensus 755 D~LPhREeEIeeLasfL~paIk----gsgp-----nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK----QSGS-----NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh----cCCC-----CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4566666666677766655442 2111 345679999999999999999988743221 11234667899996
Q ss_pred ccccccc----------ch---hhHHHHHHHHHHHHHHH-hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHH
Q 012655 238 SLFSKWF----------SE---SGKLVAKLFQKIQEMVE-EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (459)
Q Consensus 238 ~l~~~~~----------~e---~~~~v~~~f~~~~~~~~-~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (459)
.+...+. +. .+.....++........ ......||+|||||.|.... ..++..|+
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------QDVLYnLF 893 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------QKVLFTLF 893 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------HHHHHHHH
Confidence 5432210 00 01111122332222221 12345689999999997532 23444444
Q ss_pred HHHHhhcCCCCEEEEEecCC---CCcccHHHhccCCe-EEEeCCCCHHHHHHHHHHHHHH
Q 012655 304 TQMDKLKSSPNVIILTTSNI---TAAIDIAFVDRADI-KAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 304 ~~l~~l~~~~~viIi~Ttn~---~~~ld~al~~R~~~-~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
.+.. ....+++||+.+|. +..+++.+.+|+.. .+.|++++.+++.+||+..+..
T Consensus 894 R~~~--~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 894 DWPT--KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred HHhh--ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 4422 23457888888885 44567888888864 3778999999999999999886
No 114
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.46 E-value=7e-13 Score=147.85 Aligned_cols=175 Identities=19% Similarity=0.308 Sum_probs=121.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc-CCCCcceEEEE
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQCQLVEV 234 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~~~i~i 234 (459)
+..+.++|.+...+++.+.+.. .. ..+++|+||||||||++++.+|+.+..... ....+..++.+
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r------~~--------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR------RT--------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc------CC--------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 4577889988876666665432 11 234899999999999999999998842110 00124566777
Q ss_pred cccccc--ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 235 NAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 235 ~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
+...+. .++.++....+..+|+.+... ..++||||||++.+...+.+ .......+.|...+ ..
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~----~~~~ILfIDEih~l~~~~~~-------~~~~d~~~~lkp~l----~~ 305 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQ----EGNVILFIDELHTMVGAGKA-------DGAMDAGNMLKPAL----AR 305 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHc----CCCeEEEEecHHHhccCCCC-------ccchhHHHHhcchh----hc
Confidence 777665 346677777788888775431 36789999999999865421 11223344443333 45
Q ss_pred CCEEEEEecCCCCc-----ccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 313 PNVIILTTSNITAA-----IDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 313 ~~viIi~Ttn~~~~-----ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
+.+.+|++|+..+- +|+++.+||+ .+.++.|+.+++..|++...+.+
T Consensus 306 g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 306 GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred CCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 78899999888763 6999999997 57799999999999998765543
No 115
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.46 E-value=3.2e-12 Score=124.13 Aligned_cols=139 Identities=23% Similarity=0.316 Sum_probs=90.2
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc------ccccccchhhHH-HHHHHHHHH-------
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS------LFSKWFSESGKL-VAKLFQKIQ------- 259 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~------l~~~~~~e~~~~-v~~~f~~~~------- 259 (459)
++.++|.||||||||++|+++|+.++.++ +.+++.. +++.+.+..... .........
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~---------~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPV---------MLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVR 91 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCE---------EEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccc
Confidence 45599999999999999999999887766 5565543 333332211111 111100000
Q ss_pred ------HHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh--------------cCCCCEEEEE
Q 012655 260 ------EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--------------KSSPNVIILT 319 (459)
Q Consensus 260 ------~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l--------------~~~~~viIi~ 319 (459)
.+........+++|||++.+.. .+.+.|+..|+.- +.+..+.||+
T Consensus 92 ~~~~~g~l~~A~~~g~~lllDEi~r~~~---------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIa 156 (262)
T TIGR02640 92 QNWVDNRLTLAVREGFTLVYDEFTRSKP---------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIF 156 (262)
T ss_pred eeecCchHHHHHHcCCEEEEcchhhCCH---------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEE
Confidence 0000012446899999998654 4556666666431 1234677999
Q ss_pred ecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Q 012655 320 TSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357 (459)
Q Consensus 320 Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l 357 (459)
|+|... .++.++.+|| ..++++.|+.++..+|++..+
T Consensus 157 TsN~~~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 157 TSNPVEYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred eeCCccccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 999763 4588999999 889999999999999988754
No 116
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.46 E-value=5.1e-13 Score=138.56 Aligned_cols=210 Identities=21% Similarity=0.243 Sum_probs=144.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCC-C--c-----
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY-P--Q----- 228 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~-~--~----- 228 (459)
.|++++|++.+.+.|.+.+..... ....+|.||.|+||||+||.+|+.++..-.... | .
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri-------------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRI-------------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcc-------------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 589999999999999888765211 134899999999999999999999975431110 0 0
Q ss_pred -------ceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 229 -------CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 229 -------~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
..++++++.+ ..+-..++.+.+++.... ......|.+|||++.|.. ...|+
T Consensus 81 ~I~~g~~~DviEiDaAS------n~gVddiR~i~e~v~y~P-~~~ryKVyiIDEvHMLS~---------------~afNA 138 (515)
T COG2812 81 EINEGSLIDVIEIDAAS------NTGVDDIREIIEKVNYAP-SEGRYKVYIIDEVHMLSK---------------QAFNA 138 (515)
T ss_pred hhhcCCcccchhhhhhh------ccChHHHHHHHHHhccCC-ccccceEEEEecHHhhhH---------------HHHHH
Confidence 1111222111 112244555555544321 234668999999998865 57899
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFS 381 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 381 (459)
||+.++. +..++++|.+|..++.+...+++|| ..+.|...+.++....+...+.+- ++.
T Consensus 139 LLKTLEE--PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E---~I~--------------- 197 (515)
T COG2812 139 LLKTLEE--PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKE---GIN--------------- 197 (515)
T ss_pred Hhccccc--CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhc---CCc---------------
Confidence 9999887 5667777777777899999999999 777888888888888887777652 110
Q ss_pred HHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCCCHHHHH
Q 012655 382 ILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFL 443 (459)
Q Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~ 443 (459)
.....|..+|+.++| |.||.-.|.+.+.+... ..+|.+++.
T Consensus 198 ------------------~e~~aL~~ia~~a~G-s~RDalslLDq~i~~~~--~~It~~~v~ 238 (515)
T COG2812 198 ------------------IEEDALSLIARAAEG-SLRDALSLLDQAIAFGE--GEITLESVR 238 (515)
T ss_pred ------------------cCHHHHHHHHHHcCC-ChhhHHHHHHHHHHccC--CcccHHHHH
Confidence 012348889999999 88888888887755544 455555444
No 117
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2.4e-12 Score=136.03 Aligned_cols=165 Identities=19% Similarity=0.270 Sum_probs=111.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccC---CCC------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS---RYP------ 227 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~---~~~------ 227 (459)
.|++++|++.+++.|.+.+.. |-- +..+||+||+|+||||+|+++|+.+...-.. ...
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~-------~rl------~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILN-------NKL------THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHc-------CCC------CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 489999999999888877542 111 3559999999999999999999998532100 000
Q ss_pred ------cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 228 ------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 228 ------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
+..++++++.+. ..-..++.+...+..... .....|++|||+|.+.. ...++
T Consensus 81 ~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~-~~~~KVIIIDEad~Lt~---------------~A~Na 138 (605)
T PRK05896 81 SINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPT-TFKYKVYIIDEAHMLST---------------SAWNA 138 (605)
T ss_pred HHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchh-hCCcEEEEEechHhCCH---------------HHHHH
Confidence 112344433221 112335555554443211 12446899999998754 34688
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
|+..|+. +.+.+++|.+|+.+..+.+++++|| ..+.+.+++..+...+++..+.+
T Consensus 139 LLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~k 193 (605)
T PRK05896 139 LLKTLEE--PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKK 193 (605)
T ss_pred HHHHHHh--CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHH
Confidence 9998887 3445666666677788989999998 57899999999998888887765
No 118
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=5.8e-12 Score=134.60 Aligned_cols=165 Identities=18% Similarity=0.264 Sum_probs=111.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC-----------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR----------- 225 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~----------- 225 (459)
.|++++|++.+++.|.+.+.. |-- +..+||+||+|+||||+|+++|+.+.......
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~-------gri------~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFET-------GRI------AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHc-------CCC------CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 599999999999998887653 211 34699999999999999999999986432100
Q ss_pred CCcc---------eEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchH
Q 012655 226 YPQC---------QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSI 296 (459)
Q Consensus 226 ~~~~---------~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~ 296 (459)
...| .+++++..+. .....++.+.+.+.... ......|++|||+|.+..
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~------~gvd~IReIie~~~~~P-~~a~~KVvIIDEad~Ls~--------------- 146 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASH------TGVDDIREIIESVRYRP-VSARYKVYIIDEVHMLST--------------- 146 (598)
T ss_pred cHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHHhch-hcCCcEEEEEEChHhCCH---------------
Confidence 0011 1233332211 11234555555544321 123557999999988754
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 297 RVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 297 ~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
...|.|++.|+.. ...+++|.+++....+...+++|| ..+.|..++.++...+++..+++
T Consensus 147 ~a~naLLKtLEeP--p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~k 206 (598)
T PRK09111 147 AAFNALLKTLEEP--PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAK 206 (598)
T ss_pred HHHHHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHH
Confidence 4578899988873 334444444455566777789998 68899999999988888888765
No 119
>PRK05642 DNA replication initiation factor; Validated
Probab=99.44 E-value=1.5e-12 Score=124.33 Aligned_cols=181 Identities=15% Similarity=0.162 Sum_probs=122.8
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (459)
..++|+||+|+|||+|++++++++... +..+++++..++... ...+.+... ...+|+||
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~------~~~v~y~~~~~~~~~--------~~~~~~~~~-------~~d~LiiD 104 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR------GEPAVYLPLAELLDR--------GPELLDNLE-------QYELVCLD 104 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC------CCcEEEeeHHHHHhh--------hHHHHHhhh-------hCCEEEEe
Confidence 458999999999999999999876321 234466666554321 112222222 33689999
Q ss_pred hhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccC--CeEEEeCCCCHHHH
Q 012655 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQAR 349 (459)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~--~~~i~~~~P~~~~r 349 (459)
+++.+..+ ......|++.++.+...++.+|++++..+..+ .+.+.+|+ +..+.+.+|+.+++
T Consensus 105 Di~~~~~~-------------~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~ 171 (234)
T PRK05642 105 DLDVIAGK-------------ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDK 171 (234)
T ss_pred chhhhcCC-------------hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHH
Confidence 99977432 13346688888887777788888887766544 67888998 58888999999999
Q ss_pred HHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH-H
Q 012655 350 YEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA-H 428 (459)
Q Consensus 350 ~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a-~ 428 (459)
.++++...... +. . +. ...+..+++.+.| +.|.+..++... .
T Consensus 172 ~~il~~ka~~~---~~----------~---------------l~--------~ev~~~L~~~~~~-d~r~l~~~l~~l~~ 214 (234)
T PRK05642 172 LRALQLRASRR---GL----------H---------------LT--------DEVGHFILTRGTR-SMSALFDLLERLDQ 214 (234)
T ss_pred HHHHHHHHHHc---CC----------C---------------CC--------HHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 99998655432 21 0 00 1237788888887 777777776655 4
Q ss_pred HhhcCCCCCCHHHHHHHH
Q 012655 429 AALANPNGCDPSKFLLTV 446 (459)
Q Consensus 429 a~~~~~~~it~~d~~~Al 446 (459)
+....+..+|+.-+.+++
T Consensus 215 ~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 215 ASLQAQRKLTIPFLKETL 232 (234)
T ss_pred HHHHcCCcCCHHHHHHHh
Confidence 444455778887776665
No 120
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.44 E-value=3.2e-12 Score=121.45 Aligned_cols=177 Identities=16% Similarity=0.153 Sum_probs=113.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
++.++|+||+|||||+|++++++.... .+..++.+++..+... +.. .....+++|
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~------~~~~~~~i~~~~~~~~------------~~~-------~~~~~~lii 96 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY------GGRNARYLDAASPLLA------------FDF-------DPEAELYAV 96 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh------CCCcEEEEehHHhHHH------------Hhh-------cccCCEEEE
Confidence 456999999999999999999998631 1234466666553210 110 124578999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCC-CC--cccHHHhccC--CeEEEeCCCCHHH
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI-TA--AIDIAFVDRA--DIKAYVGPPTLQA 348 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~-~~--~ld~al~~R~--~~~i~~~~P~~~~ 348 (459)
||++.+.. .....++..++.....+..+++.|++. +. .+...+.+|+ +..+.+++|+.+.
T Consensus 97 Ddi~~l~~---------------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~ 161 (227)
T PRK08903 97 DDVERLDD---------------AQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDAD 161 (227)
T ss_pred eChhhcCc---------------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHH
Confidence 99997643 123456666666555555444444443 32 2457777887 5799999999988
Q ss_pred HHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHH
Q 012655 349 RYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAH 428 (459)
Q Consensus 349 r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~ 428 (459)
+..+++...... +. .+. ...+..+++.+.| +.|.++.++....
T Consensus 162 ~~~~l~~~~~~~---~v-------------------------~l~--------~~al~~L~~~~~g-n~~~l~~~l~~l~ 204 (227)
T PRK08903 162 KIAALKAAAAER---GL-------------------------QLA--------DEVPDYLLTHFRR-DMPSLMALLDALD 204 (227)
T ss_pred HHHHHHHHHHHc---CC-------------------------CCC--------HHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 888777655442 11 010 1136677776676 7788777776653
Q ss_pred H-hhcCCCCCCHHHHHHHHH
Q 012655 429 A-ALANPNGCDPSKFLLTVI 447 (459)
Q Consensus 429 a-~~~~~~~it~~d~~~Al~ 447 (459)
. .......+|+..+.+++.
T Consensus 205 ~~~~~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 205 RYSLEQKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHhCCCCCHHHHHHHHh
Confidence 2 224557899888888774
No 121
>PRK08727 hypothetical protein; Validated
Probab=99.44 E-value=2.4e-12 Score=122.81 Aligned_cols=182 Identities=18% Similarity=0.135 Sum_probs=116.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (459)
..++|+||+|||||+|+++++..+... +...++++..++. ..+...++.. ....+|+||
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~------~~~~~y~~~~~~~--------~~~~~~~~~l-------~~~dlLiID 100 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA------GRSSAYLPLQAAA--------GRLRDALEAL-------EGRSLVALD 100 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc------CCcEEEEeHHHhh--------hhHHHHHHHH-------hcCCEEEEe
Confidence 449999999999999999999886422 1222444432211 1122222222 245799999
Q ss_pred hhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccC--CeEEEeCCCCHHHH
Q 012655 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQAR 349 (459)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~--~~~i~~~~P~~~~r 349 (459)
|++.+..+. .....++..++.....+..+|+++...+..+ ++.+.+|+ ...+.+++|+.+++
T Consensus 101 Di~~l~~~~-------------~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~ 167 (233)
T PRK08727 101 GLESIAGQR-------------EDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVAR 167 (233)
T ss_pred CcccccCCh-------------HHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHH
Confidence 999775432 2234566666666555556777777777766 68899996 68889999999999
Q ss_pred HHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHH
Q 012655 350 YEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHA 429 (459)
Q Consensus 350 ~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a 429 (459)
.+|++...... +.. +. ...+..|++.+.| +.|.+..++.....
T Consensus 168 ~~iL~~~a~~~---~l~-------------------------l~--------~e~~~~La~~~~r-d~r~~l~~L~~l~~ 210 (233)
T PRK08727 168 AAVLRERAQRR---GLA-------------------------LD--------EAAIDWLLTHGER-ELAGLVALLDRLDR 210 (233)
T ss_pred HHHHHHHHHHc---CCC-------------------------CC--------HHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 99999866542 110 00 1236788888776 44444444554421
Q ss_pred -hhcCCCCCCHHHHHHHHH
Q 012655 430 -ALANPNGCDPSKFLLTVI 447 (459)
Q Consensus 430 -~~~~~~~it~~d~~~Al~ 447 (459)
....+..+|...+.+.+.
T Consensus 211 ~~~~~~~~it~~~~~~~l~ 229 (233)
T PRK08727 211 ESLAAKRRVTVPFLRRVLE 229 (233)
T ss_pred HHHHhCCCCCHHHHHHHHh
Confidence 223345789888877764
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.8e-12 Score=136.06 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=108.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC------C----
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR------Y---- 226 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~------~---- 226 (459)
.|++++|++.+++.|...+.. |-- +..+||+||+|+|||++|+++|+.+...-... .
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~-------grl------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDN-------NRL------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHc-------CCC------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 499999999999999887653 211 24579999999999999999999984211000 0
Q ss_pred -----CcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 227 -----PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 227 -----~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
.+..++++++.+- .....++.+....... .......|++|||++.+.. ...++
T Consensus 79 ~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~-P~~~~~KVvIIDEad~Lt~---------------~A~NA 136 (535)
T PRK08451 79 SALENRHIDIIEMDAASN------RGIDDIRELIEQTKYK-PSMARFKIFIIDEVHMLTK---------------EAFNA 136 (535)
T ss_pred HHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhC-cccCCeEEEEEECcccCCH---------------HHHHH
Confidence 0112333333211 0113344433322211 1113457999999987754 56788
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
|+..|+.. ...+.+|.+++.+..+.+++++|+ ..++|.+++.++....++..+.+
T Consensus 137 LLK~LEEp--p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~ 191 (535)
T PRK08451 137 LLKTLEEP--PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEK 191 (535)
T ss_pred HHHHHhhc--CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHH
Confidence 99998874 334444444455688889999997 78899999998888888777765
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=4.5e-12 Score=132.84 Aligned_cols=165 Identities=21% Similarity=0.254 Sum_probs=107.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC------CC---
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR------YP--- 227 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~------~~--- 227 (459)
.|++++|++.+.+.|.+.+.. |-- +..+||+||+|+||||+|+.+|+.+...-... ..
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~-------~~i------~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKL-------QRV------SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred cHHHccChHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 589999999999988887653 111 24578999999999999999999986311000 00
Q ss_pred ------cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 228 ------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 228 ------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
...++++++.+- ..-..++.+.+.+... .......+++|||++.+.. ...++
T Consensus 81 ~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~-P~~~~~KVvIIDEad~Lt~---------------~a~na 138 (486)
T PRK14953 81 EIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYT-PIKGKYKVYIIDEAHMLTK---------------EAFNA 138 (486)
T ss_pred HHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhC-cccCCeeEEEEEChhhcCH---------------HHHHH
Confidence 112333333211 1122344444443322 1124567999999997754 34678
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
|+..++.. ...+++|.+++....+..++.+|+ ..+.+.+++.++...+++..++.
T Consensus 139 LLk~LEep--p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~ 193 (486)
T PRK14953 139 LLKTLEEP--PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNE 193 (486)
T ss_pred HHHHHhcC--CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHH
Confidence 88888763 334444444455667888889998 57889999999999998888775
No 124
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.43 E-value=3.2e-12 Score=142.59 Aligned_cols=175 Identities=25% Similarity=0.389 Sum_probs=125.6
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccc-ccCCCCcceEEE
Q 012655 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR-FSSRYPQCQLVE 233 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~-~~~~~~~~~~i~ 233 (459)
.+-|+.++|.+...+++.+.+... . ..+++|+||||||||++++.+|+.+... ......+..++.
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r~------~--------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGRR------T--------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHccc------c--------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 456888999988888887775431 1 2358999999999999999999987421 111123566788
Q ss_pred Ecccccc--ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 234 VNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 234 i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
++...+. .+|.++.+..+..+++.+.. ..++||||||++.+...+.. .+ ...+.+.|...+ .
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~---~g----~~~~a~lLkp~l----~ 304 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQE-----NNNIILVIDEVHTLIGAGAA---EG----AIDAANILKPAL----A 304 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHh-----cCCeEEEEecHHHHhcCCCC---CC----cccHHHHhHHHH----h
Confidence 8887776 46778888888889888765 36789999999999865421 11 122333333333 3
Q ss_pred CCCEEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 312 SPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 312 ~~~viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
.+.+.+|++|+..+ ..|+++.+||. .+.++.|+.++...|++.....+
T Consensus 305 rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~ 357 (821)
T CHL00095 305 RGELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRY 357 (821)
T ss_pred CCCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHH
Confidence 46788888888664 35899999995 57889999999999998876654
No 125
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=8.9e-12 Score=125.97 Aligned_cols=227 Identities=21% Similarity=0.271 Sum_probs=152.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc
Q 012655 161 LIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (459)
Q Consensus 161 li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (459)
+.+.++..+++..++.... .|-. +.+++++||||||||++++.+++++.... +....+++||..+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~----~~~~------p~n~~iyG~~GTGKT~~~~~v~~~l~~~~----~~~~~~yINc~~~~ 84 (366)
T COG1474 19 LPHREEEINQLASFLAPAL----RGER------PSNIIIYGPTGTGKTATVKFVMEELEESS----ANVEVVYINCLELR 84 (366)
T ss_pred ccccHHHHHHHHHHHHHHh----cCCC------CccEEEECCCCCCHhHHHHHHHHHHHhhh----ccCceEEEeeeeCC
Confidence 6666777777766654322 2323 23499999999999999999999996542 22236899997764
Q ss_pred cccc------------chhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh
Q 012655 241 SKWF------------SESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (459)
Q Consensus 241 ~~~~------------~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~ 308 (459)
+.+. ...+.....++....+.+.......||+|||+|.|..+.. .++..|+..-..
T Consensus 85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~ 152 (366)
T COG1474 85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGE 152 (366)
T ss_pred CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhccc
Confidence 3321 1223334566666666666666788999999999987431 444555544333
Q ss_pred hcCCCCEEEEEecCCCC---cccHHHhccCC-eEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHh
Q 012655 309 LKSSPNVIILTTSNITA---AIDIAFVDRAD-IKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILK 384 (459)
Q Consensus 309 l~~~~~viIi~Ttn~~~---~ld~al~~R~~-~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 384 (459)
. ..++.+++.+|... .+|+.+.++++ ..+.|++.+.++.++|++...+.....+.+...
T Consensus 153 ~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~--------------- 215 (366)
T COG1474 153 N--KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDD--------------- 215 (366)
T ss_pred c--ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCcc---------------
Confidence 3 45678888888664 45888887764 567999999999999999999987655543210
Q ss_pred hcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHH
Q 012655 385 EKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVI 447 (459)
Q Consensus 385 ~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~ 447 (459)
+ -.....++.+..| +.|-.-.++..| .|...+...++.+++..|..
T Consensus 216 -------v---------l~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~ 263 (366)
T COG1474 216 -------V---------LKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQE 263 (366)
T ss_pred -------H---------HHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence 0 1123445555666 445444555666 66667889999999998843
No 126
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=5.8e-12 Score=134.01 Aligned_cols=165 Identities=22% Similarity=0.288 Sum_probs=110.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC-CC--------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR-YP-------- 227 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~-~~-------- 227 (459)
.|++++|++.+++.|...+.. |-- +..+||+||+|+|||++|+++|+.+...-... .+
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~-------~~i------~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~ 80 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIES-------NKI------ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHH
Confidence 499999999999998888753 111 34589999999999999999999986421000 00
Q ss_pred ------cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 228 ------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 228 ------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
+-.++++++.+ ......++.+.+.+.... ......+++|||++.+.. ...+.
T Consensus 81 ~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p-~~~~~KVvIIDEa~~Ls~---------------~a~na 138 (563)
T PRK06647 81 SIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPP-ASSRYRVYIIDEVHMLSN---------------SAFNA 138 (563)
T ss_pred HHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhcCH---------------HHHHH
Confidence 11223333211 011233444443333211 124567999999998754 45788
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
|++.++. +...+++|.+++.+..+.+++++|+ ..+.+.+++.++..++++..+..
T Consensus 139 LLK~LEe--pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~ 193 (563)
T PRK06647 139 LLKTIEE--PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLE 193 (563)
T ss_pred HHHhhcc--CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 8888876 4455666666666778888999998 57889999998888888776654
No 127
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.41 E-value=1.6e-12 Score=145.42 Aligned_cols=176 Identities=20% Similarity=0.322 Sum_probs=120.6
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccC-CCCcceEEE
Q 012655 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS-RYPQCQLVE 233 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~-~~~~~~~i~ 233 (459)
.+.++.++|.++..+++.+.+.. .. ..+++|+||||+|||++++.+|+.+...... ...+..++.
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r------~~--------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR------RT--------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc------CC--------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 34577889988876666665432 11 2348899999999999999999987322100 012455677
Q ss_pred Ecccccc--ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 234 VNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 234 i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
++...+. .+|.++....+..++..+... ..++||||||++.+...+.+ .......+.|... -.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~----~~~~ILfIDEih~l~~~g~~-------~~~~d~~~~Lk~~----l~ 299 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKS----EGQIILFIDELHTLVGAGKA-------EGAMDAGNMLKPA----LA 299 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhc----CCCeEEEeccHHHhhcCCCC-------cchhHHHHHhchh----hh
Confidence 7666654 356666667777777766531 35789999999999764311 1122333433333 24
Q ss_pred CCCEEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 312 SPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 312 ~~~viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
.+.+.+|++|+..+ ..|+++.+||. .+.++.|+.+++..|++.....+
T Consensus 300 ~g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~ 352 (852)
T TIGR03346 300 RGELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERY 352 (852)
T ss_pred cCceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHh
Confidence 57788888888764 36999999995 57899999999999998876665
No 128
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.41 E-value=4.3e-12 Score=138.85 Aligned_cols=168 Identities=20% Similarity=0.249 Sum_probs=114.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 160 ~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
.++|++..++.+.+.+... ..|+.... .+...+||+||||||||.+|+++|..++.++ +.+++.++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~----~~gl~~~~-kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~---------i~id~se~ 524 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMS----RAGLGHEH-KPVGSFLFAGPTGVGKTEVTVQLSKALGIEL---------LRFDMSEY 524 (758)
T ss_pred eEeCcHHHHHHHHHHHHHH----hccccCCC-CCcceEEEECCCCCCHHHHHHHHHHHhCCCc---------EEeechhh
Confidence 4788888888888876542 23332100 0123589999999999999999999997655 66776654
Q ss_pred cc-----cccchh----hHHHH-HHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh
Q 012655 240 FS-----KWFSES----GKLVA-KLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309 (459)
Q Consensus 240 ~~-----~~~~e~----~~~v~-~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l 309 (459)
.. ..+|.. +.... .+...++. ...+|++|||+|++.. .+.+.|+..|+.-
T Consensus 525 ~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~-----~p~sVlllDEieka~~---------------~v~~~LLq~ld~G 584 (758)
T PRK11034 525 MERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-----HPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNG 584 (758)
T ss_pred cccccHHHHcCCCCCcccccccchHHHHHHh-----CCCcEEEeccHhhhhH---------------HHHHHHHHHHhcC
Confidence 32 122211 11111 11122221 3558999999998854 5778888888732
Q ss_pred --c-------CCCCEEEEEecCCC-------------------------CcccHHHhccCCeEEEeCCCCHHHHHHHHHH
Q 012655 310 --K-------SSPNVIILTTSNIT-------------------------AAIDIAFVDRADIKAYVGPPTLQARYEILRS 355 (459)
Q Consensus 310 --~-------~~~~viIi~Ttn~~-------------------------~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~ 355 (459)
. ...++++|+|||.. ..+.+.|++|+|.++.|++.+.++..+|+..
T Consensus 585 ~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~ 664 (758)
T PRK11034 585 TLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDK 664 (758)
T ss_pred eeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHH
Confidence 1 12578899999932 1246889999999999999999999999999
Q ss_pred HHHHHH
Q 012655 356 CLQELI 361 (459)
Q Consensus 356 ~l~~~~ 361 (459)
.+.++.
T Consensus 665 ~l~~~~ 670 (758)
T PRK11034 665 FIVELQ 670 (758)
T ss_pred HHHHHH
Confidence 888763
No 129
>PRK06620 hypothetical protein; Validated
Probab=99.41 E-value=7.6e-12 Score=117.71 Aligned_cols=164 Identities=14% Similarity=0.136 Sum_probs=109.8
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (459)
+.++||||+|||||+|++++++..+..+ +..... . .. .. ....+++||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~-----------~~~~~~-----~------~~----~~------~~~d~lliD 92 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI-----------IKDIFF-----N------EE----IL------EKYNAFIIE 92 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEE-----------cchhhh-----c------hh----HH------hcCCEEEEe
Confidence 5699999999999999999988764321 110000 0 00 11 134789999
Q ss_pred hhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCc--ccHHHhccC--CeEEEeCCCCHHHHH
Q 012655 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA--IDIAFVDRA--DIKAYVGPPTLQARY 350 (459)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~--ld~al~~R~--~~~i~~~~P~~~~r~ 350 (459)
|++.+.. ..++..++.+...++.++++++..|.. + +.+++|+ +..+.+.+|+.+.+.
T Consensus 93 di~~~~~------------------~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~ 153 (214)
T PRK06620 93 DIENWQE------------------PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIK 153 (214)
T ss_pred ccccchH------------------HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHH
Confidence 9984411 256677777777788888888776665 4 6788997 458899999999999
Q ss_pred HHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHH-
Q 012655 351 EILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHA- 429 (459)
Q Consensus 351 ~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a- 429 (459)
.+++..+... |.. +. ...+..|++.+.| +.|.+..++....+
T Consensus 154 ~~l~k~~~~~---~l~-------------------------l~--------~ev~~~L~~~~~~-d~r~l~~~l~~l~~~ 196 (214)
T PRK06620 154 ILIFKHFSIS---SVT-------------------------IS--------RQIIDFLLVNLPR-EYSKIIEILENINYF 196 (214)
T ss_pred HHHHHHHHHc---CCC-------------------------CC--------HHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 9998887752 110 00 1136778888877 77777776666522
Q ss_pred hhcCCCCCCHHHHHHHH
Q 012655 430 ALANPNGCDPSKFLLTV 446 (459)
Q Consensus 430 ~~~~~~~it~~d~~~Al 446 (459)
....+..+|...+.+++
T Consensus 197 ~~~~~~~it~~~~~~~l 213 (214)
T PRK06620 197 ALISKRKITISLVKEVL 213 (214)
T ss_pred HHHcCCCCCHHHHHHHh
Confidence 22344678888777665
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=4.1e-12 Score=132.22 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=109.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc-------CCCC--
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-------SRYP-- 227 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-------~~~~-- 227 (459)
.|++++|++.+++.|...+.. |.- +..+||+||+|+|||++|+++|+.+...-. ..+.
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~-------~~i------~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRF-------NRA------AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHc-------CCC------ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 499999999999888887653 211 355899999999999999999999853210 0000
Q ss_pred -------cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHH
Q 012655 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (459)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (459)
+..++++++.+.. ....++.+.+.+.. ........+++|||+|.+.. ...+
T Consensus 82 ~~i~~~~~~d~~~i~g~~~~------gid~ir~i~~~l~~-~~~~~~~kvvIIdead~lt~---------------~~~n 139 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASHR------GIEDIRQINETVLF-TPSKSRYKIYIIDEVHMLTK---------------EAFN 139 (451)
T ss_pred HHHhcCCCCceEEeeccccC------CHHHHHHHHHHHHh-hhhcCCCEEEEEecHHhhCH---------------HHHH
Confidence 1123333332110 11233333222221 11124568999999998854 3467
Q ss_pred HHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 301 ~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
.|++.++.. .+.+++|.++|.+..+.+++++|+ ..+.+.+++.++...++...+++
T Consensus 140 ~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 140 SLLKTLEEP--PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred HHHHHhhcC--CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 888888873 345555556677788888999999 67899999999888888877665
No 131
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.40 E-value=2.3e-12 Score=126.82 Aligned_cols=137 Identities=22% Similarity=0.279 Sum_probs=92.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccc--ccchh------hHHH----HHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK--WFSES------GKLV----AKLFQKIQEM 261 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~--~~~e~------~~~v----~~~f~~~~~~ 261 (459)
++.|+|.||||||||++++.+|..++.++ +.++++..+.. ++|.. +..+ ...+..+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~---------~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-- 132 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPC---------VRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-- 132 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCe---------EEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH--
Confidence 45699999999999999999999999877 55655544332 23321 1110 11122222
Q ss_pred HHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH---------HHhhcCCCCEEEEEecCCCC-------
Q 012655 262 VEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ---------MDKLKSSPNVIILTTSNITA------- 325 (459)
Q Consensus 262 ~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~---------l~~l~~~~~viIi~Ttn~~~------- 325 (459)
..+.++++||++...++. ...++.+|+. -..++.++.+.+|+|.|..+
T Consensus 133 ----~~g~illlDEin~a~p~~------------~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~ 196 (327)
T TIGR01650 133 ----QHNVALCFDEYDAGRPDV------------MFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGL 196 (327)
T ss_pred ----hCCeEEEechhhccCHHH------------HHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcc
Confidence 256789999999775422 2223333331 01123456799999999865
Q ss_pred -----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Q 012655 326 -----AIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357 (459)
Q Consensus 326 -----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l 357 (459)
.++.++++||-.++.+++|+.+.-.+|+....
T Consensus 197 y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 197 YHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 25899999998888999999999999987654
No 132
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.39 E-value=1.2e-11 Score=123.33 Aligned_cols=161 Identities=21% Similarity=0.259 Sum_probs=102.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+.+++.+..++.. +-. .+++|+||||+|||++++++++.+.... ....++++++
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~-------~~~-------~~~ll~G~~G~GKt~~~~~l~~~l~~~~----~~~~~i~~~~ 76 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE-------KNM-------PHLLFAGPPGTGKTTAALALARELYGED----WRENFLELNA 76 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC-------CCC-------CeEEEECCCCCCHHHHHHHHHHHHcCCc----cccceEEecc
Confidence 488999999999888887642 211 2489999999999999999999874221 1123355544
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhc-ccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCE
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEE-NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV 315 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~-~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~v 315 (459)
.+... ...+...+.......... ....+++|||++.+.. ...+.|+..++.... ++
T Consensus 77 ~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------~~~~~L~~~le~~~~--~~ 133 (319)
T PRK00440 77 SDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------DAQQALRRTMEMYSQ--NT 133 (319)
T ss_pred ccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------------HHHHHHHHHHhcCCC--CC
Confidence 32111 111111111111111011 2356899999987744 224556666665433 34
Q ss_pred EEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 316 IILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 316 iIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
.+|.++|.+..+.+.+.+|+. .+.+++++.++...+++..+.+
T Consensus 134 ~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred eEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHH
Confidence 445556666777778889984 6899999999998888887775
No 133
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.3e-12 Score=134.58 Aligned_cols=165 Identities=15% Similarity=0.190 Sum_probs=106.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccC------------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS------------ 224 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~------------ 224 (459)
.|++++|++.+++.|.+.+.. |-- +..+||+||+|+||||+|+.+|+.+...-..
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~-------~ri------~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRM-------DRV------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHc-------CCC------CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 499999999999988776543 111 2459999999999999999999999652100
Q ss_pred --CCCc---------ceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCC
Q 012655 225 --RYPQ---------CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPS 293 (459)
Q Consensus 225 --~~~~---------~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~ 293 (459)
..+. ..++++++.+. .....++.+.+.+... .......+++|||+|.+..
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~-P~~~~~KVvIIdEad~Lt~------------ 141 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYG-PQKGRYRVYIIDEVHMLST------------ 141 (620)
T ss_pred CccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhh-hhcCCCEEEEEeChhhcCH------------
Confidence 0000 11222222110 1123344443333211 1123457999999988854
Q ss_pred chHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 294 DSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 294 ~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
...+.|++.|+... +.+++|.+++....+-+.+.+|+ ..+.+.+++.++....+...+..
T Consensus 142 ---~a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~ 201 (620)
T PRK14954 142 ---AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRA 201 (620)
T ss_pred ---HHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHH
Confidence 34678888887732 34444444455677888889998 88899999998888887777665
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.39 E-value=7.2e-12 Score=138.20 Aligned_cols=170 Identities=24% Similarity=0.298 Sum_probs=114.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
+.+.++|++..++.+.+.+.. .+.|+.... .+...++|+||+|||||++|+++|..++.++ +.+++
T Consensus 452 l~~~v~GQ~~ai~~l~~~i~~----~~~g~~~~~-~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~---------~~~d~ 517 (731)
T TIGR02639 452 LKAKIFGQDEAIDSLVSSIKR----SRAGLGNPN-KPVGSFLFTGPTGVGKTELAKQLAEALGVHL---------ERFDM 517 (731)
T ss_pred HhcceeCcHHHHHHHHHHHHH----HhcCCCCCC-CCceeEEEECCCCccHHHHHHHHHHHhcCCe---------EEEeC
Confidence 455677888777777666543 334443110 0123489999999999999999999996544 66666
Q ss_pred cccccc-----cc----chhhH-HHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHH
Q 012655 237 HSLFSK-----WF----SESGK-LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (459)
Q Consensus 237 ~~l~~~-----~~----~e~~~-~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (459)
+++... .. +..+. ..+.+.+.++. ...+||+|||+|.+.+ .+.+.|+..|
T Consensus 518 se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~-----~p~~VvllDEieka~~---------------~~~~~Ll~~l 577 (731)
T TIGR02639 518 SEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRK-----HPHCVLLLDEIEKAHP---------------DIYNILLQVM 577 (731)
T ss_pred chhhhcccHHHHhcCCCCCcccchhhHHHHHHHh-----CCCeEEEEechhhcCH---------------HHHHHHHHhh
Confidence 554321 11 11111 11122222222 3568999999997744 5678888888
Q ss_pred Hhhc---------CCCCEEEEEecCCCC-------------------------cccHHHhccCCeEEEeCCCCHHHHHHH
Q 012655 307 DKLK---------SSPNVIILTTSNITA-------------------------AIDIAFVDRADIKAYVGPPTLQARYEI 352 (459)
Q Consensus 307 ~~l~---------~~~~viIi~Ttn~~~-------------------------~ld~al~~R~~~~i~~~~P~~~~r~~I 352 (459)
+.-. ...+++||+|+|... .+.+.|++|+|.++.|.+.+.++..+|
T Consensus 578 d~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~I 657 (731)
T TIGR02639 578 DYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKI 657 (731)
T ss_pred ccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHH
Confidence 7421 235688999998742 146778899999999999999999999
Q ss_pred HHHHHHHH
Q 012655 353 LRSCLQEL 360 (459)
Q Consensus 353 l~~~l~~~ 360 (459)
++..+.++
T Consensus 658 v~~~L~~l 665 (731)
T TIGR02639 658 VQKFVDEL 665 (731)
T ss_pred HHHHHHHH
Confidence 99999875
No 135
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=2.3e-11 Score=124.03 Aligned_cols=165 Identities=19% Similarity=0.258 Sum_probs=109.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC-C--CcceEEE
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR-Y--PQCQLVE 233 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~-~--~~~~~i~ 233 (459)
.|++++|++.+++.+.+.+.. |.- +..++||||||+|||++++++++.+....... . .+..+++
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~-------~~~------~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIEN-------NHL------AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 489999999999888887653 211 35699999999999999999999986432110 0 0112233
Q ss_pred EccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCC
Q 012655 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (459)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~ 313 (459)
++... ......+..++..+... .......+++|||++.+.. ..++.++..++. +..
T Consensus 82 l~~~~------~~~~~~i~~l~~~~~~~-p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~--~~~ 137 (367)
T PRK14970 82 LDAAS------NNSVDDIRNLIDQVRIP-PQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEE--PPA 137 (367)
T ss_pred ecccc------CCCHHHHHHHHHHHhhc-cccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhC--CCC
Confidence 32211 11123455555544321 1123457999999987743 346777777765 233
Q ss_pred CEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 314 NVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 314 ~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
.+++|.+++.+..+.+++.+|+ ..+.+.+|+.++...++...+.+
T Consensus 138 ~~~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~ 182 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVK 182 (367)
T ss_pred ceEEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHH
Confidence 4555555666778888999998 57889999999988888887765
No 136
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=5e-12 Score=129.96 Aligned_cols=165 Identities=16% Similarity=0.225 Sum_probs=104.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccc-cC--------CCC
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SS--------RYP 227 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~--------~~~ 227 (459)
.|++++|++.+++.|...+.. |-- +..++|+||+|+||||+|+++|+.+...- .. ..+
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~-------~~~------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRM-------GRV------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred cHhhccChHHHHHHHHHHHHh-------CCc------ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 499999999999988777653 211 24599999999999999999999986421 00 000
Q ss_pred --------------cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCC
Q 012655 228 --------------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPS 293 (459)
Q Consensus 228 --------------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~ 293 (459)
+..++.+++.+. .....++.+...+... .......+++|||++.+..
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~-p~~~~~kvvIIdea~~l~~------------ 141 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYG-PQKGRYRVYIIDEVHMLSI------------ 141 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhc-hhcCCeEEEEEeChhhCCH------------
Confidence 011222322111 1123344333333211 1123457999999998854
Q ss_pred chHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 294 DSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 294 ~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
...+.|++.++. +.+.+++|.+++....+-+++.+|+ ..+.+.+++.++..+.++..++.
T Consensus 142 ---~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~ 201 (397)
T PRK14955 142 ---AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEA 201 (397)
T ss_pred ---HHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHH
Confidence 345678888775 3334444444455677778888998 57889999988888888877764
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.9e-11 Score=131.42 Aligned_cols=165 Identities=21% Similarity=0.274 Sum_probs=106.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccC-CCC--------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS-RYP-------- 227 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~-~~~-------- 227 (459)
.|++++|++.+++.|...+... .+ +..+||+||+|+|||++++++|+.+...... ...
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~------~i-------~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c 80 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEG------RV-------AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMC 80 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhC------CC-------ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHH
Confidence 4999999999999988776531 11 3457999999999999999999998642210 000
Q ss_pred -------cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHH
Q 012655 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (459)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (459)
+..+++++.... .....++.+...+... .......|++|||+|.+.. ..++
T Consensus 81 ~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~-p~~~~~kVvIIDEa~~L~~---------------~a~n 138 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFR-PALARYKVYIIDEVHMLST---------------AAFN 138 (585)
T ss_pred HHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhC-cccCCeEEEEEeChHhCCH---------------HHHH
Confidence 112233333211 1112333333332221 1123457999999998754 4467
Q ss_pred HHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 301 ~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
.|++.|+... ..+++|.+++....+...+.+|+ ..+.|..++..+...++...+.+
T Consensus 139 aLLk~LEepp--~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 139 ALLKTLEEPP--PHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHH
Confidence 8888887733 44555555566667778888998 56789999998888888777665
No 138
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.37 E-value=2.5e-11 Score=114.11 Aligned_cols=161 Identities=25% Similarity=0.335 Sum_probs=111.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.+++|+|.+..|+.|.+-.. .|-. |.+ ..++||+|+.|||||+++|++..++.. .+..+|++..
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~---~Fl~-G~p------annvLL~G~rGtGKSSlVkall~~y~~------~GLRlIev~k 88 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTE---QFLQ-GLP------ANNVLLWGARGTGKSSLVKALLNEYAD------QGLRLIEVSK 88 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHH---HHHc-CCC------CcceEEecCCCCCHHHHHHHHHHHHhh------cCceEEEECH
Confidence 38899999999998877553 3332 333 356999999999999999999998863 2356788877
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh--cCCCC
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--KSSPN 314 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l--~~~~~ 314 (459)
.++. .+..+++.++. ....-|||+|++. + .+... -...|...|++- ....|
T Consensus 89 ~~L~---------~l~~l~~~l~~----~~~kFIlf~DDLs-F----------e~~d~---~yk~LKs~LeGgle~~P~N 141 (249)
T PF05673_consen 89 EDLG---------DLPELLDLLRD----RPYKFILFCDDLS-F----------EEGDT---EYKALKSVLEGGLEARPDN 141 (249)
T ss_pred HHhc---------cHHHHHHHHhc----CCCCEEEEecCCC-C----------CCCcH---HHHHHHHHhcCccccCCCc
Confidence 6652 23344444332 2355689999842 1 11111 224444455532 35678
Q ss_pred EEEEEecCCCCccc-----------------------HHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 315 VIILTTSNITAAID-----------------------IAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 315 viIi~Ttn~~~~ld-----------------------~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
++|.+|+|+.+.+. -++.+||+..+.|.+|+.++..+|++.+++..
T Consensus 142 vliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~ 210 (249)
T PF05673_consen 142 VLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY 210 (249)
T ss_pred EEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc
Confidence 99999999876541 12458999999999999999999999999764
No 139
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.3e-11 Score=132.78 Aligned_cols=165 Identities=21% Similarity=0.306 Sum_probs=109.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC--CCcc-----
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR--YPQC----- 229 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~--~~~~----- 229 (459)
.|++++|++.+++.|...+... .+ ...+||+||+|+|||++|+++|+.+....... ...|
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~------rl-------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISN------RI-------APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcC------CC-------CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 5899999999999988877641 11 23589999999999999999999986531100 0011
Q ss_pred ----------eEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHH
Q 012655 230 ----------QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299 (459)
Q Consensus 230 ----------~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~ 299 (459)
.+++++.. .......++.+...+.... ......|++|||+|.+.. ...
T Consensus 81 C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p-~~~~~KViIIDEad~Lt~---------------~a~ 138 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAP-VQARWKVYVIDECHMLST---------------AAF 138 (620)
T ss_pred HHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhCh-hcCCceEEEEECccccCH---------------HHH
Confidence 12222221 0112234555555443211 113457999999998754 457
Q ss_pred HHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 300 ~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
+.|++.|+. ....+++|.+|+.+..+-+.+++|+ ..+.|..++.++....+...+.+
T Consensus 139 naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 139 NALLKTLEE--PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred HHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHH
Confidence 889999886 3445666555666777888899999 67788888887777777666654
No 140
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.35 E-value=1e-11 Score=131.44 Aligned_cols=230 Identities=14% Similarity=0.136 Sum_probs=130.2
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccch--hhHHHHHHHHHHHHHHHhcccchhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE--SGKLVAKLFQKIQEMVEEENNLVFVL 272 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e--~~~~v~~~f~~~~~~~~~~~~~~ill 272 (459)
-+|||+|+||||||++|+++++........ ... ..++..+....... ++.. .++. ..+ ......+++
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~--~~~---~~~~~~l~~~~~~~~~~g~~---~~~~--G~l-~~A~~Gil~ 305 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYT--TGK---GSSAVGLTAAVTRDPETREF---TLEG--GAL-VLADNGVCC 305 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEc--CCC---CCCcCCccccceEccCcceE---EecC--ccE-EecCCCEEE
Confidence 469999999999999999999987431100 000 00111111100000 0000 0000 000 012457999
Q ss_pred hhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-----------CCCCEEEEEecCCCC-------------ccc
Q 012655 273 IDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-----------SSPNVIILTTSNITA-------------AID 328 (459)
Q Consensus 273 IDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-----------~~~~viIi~Ttn~~~-------------~ld 328 (459)
|||++.+.. .....|+..|+.-. -+.++.||+|+|+.. .++
T Consensus 306 iDEi~~l~~---------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~ 370 (509)
T smart00350 306 IDEFDKMDD---------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLP 370 (509)
T ss_pred EechhhCCH---------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCC
Confidence 999998755 34555666664311 124688999999763 479
Q ss_pred HHHhccCCeEEEe-CCCCHHHHHHHHHHHHHHHHHhcc--cc-CCccccCCcccchHHHhhcCCchhHHhhh-h-hhHHH
Q 012655 329 IAFVDRADIKAYV-GPPTLQARYEILRSCLQELIRTGI--IS-NFQDCDQSMLPNFSILKEKLSNPDIQEAD-R-SQHFY 402 (459)
Q Consensus 329 ~al~~R~~~~i~~-~~P~~~~r~~Il~~~l~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~i~~~~-~-~~~~~ 402 (459)
+++++|||..+.+ +.|+.+...+|.++.+........ .. .....+...+..+...+..+..+.+.+.. . .....
T Consensus 371 ~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y 450 (509)
T smart00350 371 APILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAY 450 (509)
T ss_pred hHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 9999999987655 889999999999987764321100 00 00011122233444444442222222211 0 11111
Q ss_pred HHHHHHHH-----HccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 403 KQLLEAAE-----ACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 403 ~~L~~la~-----~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
..++.... ...|.|.|.+..|+.+| +|....+..++.+|+..|++-+.
T Consensus 451 ~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 451 VDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 22222111 12467999999999888 77788999999999999987654
No 141
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.34 E-value=8.1e-12 Score=125.40 Aligned_cols=137 Identities=29% Similarity=0.429 Sum_probs=89.3
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccc--ccchhhHHH----HHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK--WFSESGKLV----AKLFQKIQEMVEEENN 267 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~--~~~e~~~~v----~~~f~~~~~~~~~~~~ 267 (459)
++.++|.||||||||++++.+|..++.+| +.++++..+.. .+|...-.. ...|.....-+-....
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~---------~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~ 113 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPF---------VRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR 113 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCe---------EEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc
Confidence 56799999999999999999999998776 77777654321 111111000 0000000000000001
Q ss_pred chhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh----------hcCCCCEEEEEecC-----CCCcccHHHh
Q 012655 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK----------LKSSPNVIILTTSN-----ITAAIDIAFV 332 (459)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~----------l~~~~~viIi~Ttn-----~~~~ld~al~ 332 (459)
+++++|||++.. ..+.+.|+..|+. ++-...+++++|+| ....++++++
T Consensus 114 -~ill~DEInra~---------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~l 177 (329)
T COG0714 114 -VILLLDEINRAP---------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALL 177 (329)
T ss_pred -eEEEEeccccCC---------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHH
Confidence 399999998654 3678888888886 33345689999999 4455799999
Q ss_pred ccCCeEEEeCCCCHH-HHHHHHHH
Q 012655 333 DRADIKAYVGPPTLQ-ARYEILRS 355 (459)
Q Consensus 333 ~R~~~~i~~~~P~~~-~r~~Il~~ 355 (459)
+||-..+++++|+.+ +...++..
T Consensus 178 dRf~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 178 DRFLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred hhEEEEEecCCCCchHHHHHHHHh
Confidence 999999999999544 44444444
No 142
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.33 E-value=2.3e-11 Score=131.97 Aligned_cols=261 Identities=20% Similarity=0.221 Sum_probs=145.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhc-------ccccCCCC---
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS-------IRFSSRYP--- 227 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~-------~~~~~~~~--- 227 (459)
|..++|++.+|..|.-.+..+ + ..+|||.|++|||||++|++|++.+. .+|. +.+
T Consensus 3 f~~ivGq~~~~~al~~~av~~------~--------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~-c~p~~~ 67 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP------R--------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFS-CDPDDP 67 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC------C--------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCC-CCCCCc
Confidence 678999999998776554321 0 13599999999999999999999983 1111 000
Q ss_pred -----------------cceEEEEccccccccccchhhHHHHHHHHH----H-HHHHHhcccchhhhhhhhHhHHHhhhh
Q 012655 228 -----------------QCQLVEVNAHSLFSKWFSESGKLVAKLFQK----I-QEMVEEENNLVFVLIDEVESLAAARKA 285 (459)
Q Consensus 228 -----------------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~----~-~~~~~~~~~~~illIDEid~l~~~r~~ 285 (459)
...++.+.+.......+|.. .+...+.. . ...+ ......+|||||++.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~--d~~~~l~~g~~~~~~G~L-~~A~~GiL~lDEi~~l~~---- 140 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL--DIERALREGEKAFQPGLL-AEAHRGILYIDEVNLLDD---- 140 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc--cHHHHhhcCCeeecCcce-eecCCCeEEeChhhhCCH----
Confidence 12333333322111122210 01110100 0 0001 012446999999998865
Q ss_pred ccCCCCCCchHHHHHHHHHHHHhh-----------cCCCCEEEEEecCCC-CcccHHHhccCCeEEEeCCCC-HHHHHHH
Q 012655 286 ALSGSEPSDSIRVVNALLTQMDKL-----------KSSPNVIILTTSNIT-AAIDIAFVDRADIKAYVGPPT-LQARYEI 352 (459)
Q Consensus 286 ~ls~~e~~~~~~~~~~ll~~l~~l-----------~~~~~viIi~Ttn~~-~~ld~al~~R~~~~i~~~~P~-~~~r~~I 352 (459)
..++.|+..|+.- ....++++|+|+|.. ..+..++++||+..+.++.+. .+++.++
T Consensus 141 -----------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 141 -----------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred -----------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHH
Confidence 5567788877631 112458999999965 357899999999999998775 5778888
Q ss_pred HHHHHHHHHHhcc-ccCCccccCCcc-cchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCC-ChHHHhchHHHH--
Q 012655 353 LRSCLQELIRTGI-ISNFQDCDQSML-PNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGL-SGRSLRKLPFLA-- 427 (459)
Q Consensus 353 l~~~l~~~~~~~~-~~~~~~~~~~~l-~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~-Sgr~L~~L~~~a-- 427 (459)
++..+........ ....+. ....+ ..+...........+.+ .....+..++.. -|. |.|..-.++..|
T Consensus 210 l~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~ar~~~~~V~is~-----~~~~~l~~~~~~-~~i~s~Ra~i~~~r~Ara 282 (633)
T TIGR02442 210 IRRRLAFDADPEAFAARWAA-EQEELRNRIARARSLLPSVRISD-----SLIRFISELCIE-FGVDGHRADIVMARAARA 282 (633)
T ss_pred HHHHHhhccCcHHHHHHhhh-hHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHH-hCCCCccHHHHHHHHHHH
Confidence 8765542100000 000000 00000 00000000000001110 011123333333 244 567777777777
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 012655 428 HAALANPNGCDPSKFLLTVIDTARKERSELP 458 (459)
Q Consensus 428 ~a~~~~~~~it~~d~~~Al~~~~~~~~~~~~ 458 (459)
+|...++..++.+|+..|+..+..+.....|
T Consensus 283 ~AaL~gr~~V~~~Dv~~A~~lvL~hR~~~~p 313 (633)
T TIGR02442 283 LAALDGRRRVTAEDVREAAELVLPHRRRRKP 313 (633)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHhhhhccCCC
Confidence 7778899999999999999999887765443
No 143
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.32 E-value=2.2e-11 Score=125.30 Aligned_cols=241 Identities=17% Similarity=0.188 Sum_probs=127.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
-+.++|.+++.+.+...+.+ +.++||.||||||||++|+++++..+... .+..+.+.
T Consensus 19 ~~~i~gre~vI~lll~aala----------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~-------~F~~~~~~ 75 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNAR-------AFEYLMTR 75 (498)
T ss_pred hhhccCcHHHHHHHHHHHcc----------------CCCEEEECCCChhHHHHHHHHHHHhcccC-------cceeeeee
Confidence 34466666666555544332 56699999999999999999999874210 01111111
Q ss_pred -cccccccchh-hHHH--HHHHHHHHH-HHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--
Q 012655 238 -SLFSKWFSES-GKLV--AKLFQKIQE-MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-- 310 (459)
Q Consensus 238 -~l~~~~~~e~-~~~v--~~~f~~~~~-~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-- 310 (459)
......+|.. -... ..-|..... .+ ....++|+|||..+. ...++.|+..|..-.
T Consensus 76 fttp~DLfG~l~i~~~~~~g~f~r~~~G~L---~~A~lLfLDEI~ras---------------p~~QsaLLeam~Er~~t 137 (498)
T PRK13531 76 FSTPEEVFGPLSIQALKDEGRYQRLTSGYL---PEAEIVFLDEIWKAG---------------PAILNTLLTAINERRFR 137 (498)
T ss_pred ecCcHHhcCcHHHhhhhhcCchhhhcCCcc---ccccEEeecccccCC---------------HHHHHHHHHHHHhCeEe
Confidence 0001111211 0000 011111000 00 022489999997554 467888888885321
Q ss_pred ------C-CCCEEEEEecCCCC---cccHHHhccCCeEEEeCCCCH-HHHHHHHHHHHHHHHHhccccCCccccCCcccc
Q 012655 311 ------S-SPNVIILTTSNITA---AIDIAFVDRADIKAYVGPPTL-QARYEILRSCLQELIRTGIISNFQDCDQSMLPN 379 (459)
Q Consensus 311 ------~-~~~viIi~Ttn~~~---~ld~al~~R~~~~i~~~~P~~-~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~ 379 (459)
+ ...+++++| |... ...+++.+||-..+.+|+|+. ++..+++....... ...+ .....+....
T Consensus 138 ~g~~~~~lp~rfiv~AT-N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~--~~~~---~~~~vis~ee 211 (498)
T PRK13531 138 NGAHEEKIPMRLLVTAS-NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDEN--DNPV---PASLQITDEE 211 (498)
T ss_pred cCCeEEeCCCcEEEEEC-CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccc--cCCC---cccCCCCHHH
Confidence 1 123455555 6322 234689999988899999974 55577776532110 0000 0011122223
Q ss_pred hHHHhhcCCchhHHhhhhhhHHHHHHHHHHHH---c---cCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHH
Q 012655 380 FSILKEKLSNPDIQEADRSQHFYKQLLEAAEA---C---EGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTAR 451 (459)
Q Consensus 380 ~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~---~---~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~ 451 (459)
+..+......-.+.+ .....+..|.+. + ...|.|.-.++...+ .|...++..++.+|+. .+.....
T Consensus 212 l~~lq~~v~~V~v~d-----~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 212 YQQWQKEIGKITLPD-----HVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred HHHHHHHhcceeCCH-----HHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhc
Confidence 333222221111111 112234445442 2 238999999988777 6667899999999988 5544433
No 144
>PRK09087 hypothetical protein; Validated
Probab=99.30 E-value=1.7e-11 Score=116.22 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=114.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (459)
..++|+||+|+|||+|+++++...+. .+++...+.. .++... ...+++||
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~-----------~~i~~~~~~~-----------~~~~~~--------~~~~l~iD 94 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDA-----------LLIHPNEIGS-----------DAANAA--------AEGPVLIE 94 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCC-----------EEecHHHcch-----------HHHHhh--------hcCeEEEE
Confidence 44999999999999999999987543 2333322111 111111 11478899
Q ss_pred hhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccC--CeEEEeCCCCHHHH
Q 012655 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQAR 349 (459)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~--~~~i~~~~P~~~~r 349 (459)
|++.+... ..++++.++.+...++.+|++++..+..+ .+.+++|+ +..+.+.+|+.+.+
T Consensus 95 Di~~~~~~----------------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~ 158 (226)
T PRK09087 95 DIDAGGFD----------------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALL 158 (226)
T ss_pred CCCCCCCC----------------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHH
Confidence 99865210 24577777777777788888887766544 56788887 58899999999999
Q ss_pred HHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH-H
Q 012655 350 YEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA-H 428 (459)
Q Consensus 350 ~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a-~ 428 (459)
.++++++++.. +.. +. ...+..|++++.| +-|.+..++... .
T Consensus 159 ~~iL~~~~~~~---~~~-------------------------l~--------~ev~~~La~~~~r-~~~~l~~~l~~L~~ 201 (226)
T PRK09087 159 SQVIFKLFADR---QLY-------------------------VD--------PHVVYYLVSRMER-SLFAAQTIVDRLDR 201 (226)
T ss_pred HHHHHHHHHHc---CCC-------------------------CC--------HHHHHHHHHHhhh-hHHHHHHHHHHHHH
Confidence 99999999872 110 10 1136778888775 444444444344 3
Q ss_pred HhhcCCCCCCHHHHHHHHHHH
Q 012655 429 AALANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 429 a~~~~~~~it~~d~~~Al~~~ 449 (459)
.....+..+|...+.+++...
T Consensus 202 ~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 202 LALERKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHhCCCCCHHHHHHHHHhh
Confidence 334456779999988888764
No 145
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.29 E-value=6.8e-11 Score=124.04 Aligned_cols=239 Identities=21% Similarity=0.205 Sum_probs=130.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
-|+++.|+..+++.+...+. .+.+++|+||||||||++++.+++.+...- +-..+..
T Consensus 190 d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~-------~~~~le~ 246 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLT-------NEEAIET 246 (499)
T ss_pred CHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCC-------CcEEEec
Confidence 47888888888766544332 156799999999999999999998763211 1111111
Q ss_pred ccccc-------------ccc-----chhh-HHHHHHH-HHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchH
Q 012655 237 HSLFS-------------KWF-----SESG-KLVAKLF-QKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSI 296 (459)
Q Consensus 237 ~~l~~-------------~~~-----~e~~-~~v~~~f-~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~ 296 (459)
..+.+ ..| ..+. ..+..-. .+.-. + ......+|||||++.+..
T Consensus 247 ~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~-i-~lA~~GvLfLDEi~e~~~--------------- 309 (499)
T TIGR00368 247 ARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGE-I-SLAHNGVLFLDELPEFKR--------------- 309 (499)
T ss_pred cccccchhhhccccccccCCccccccccchhhhhCCccccchhh-h-hccCCCeEecCChhhCCH---------------
Confidence 11100 000 0000 0000000 00000 1 113457999999987644
Q ss_pred HHHHHHHHHHHhhc-----------CCCCEEEEEecCCC------C-----------------cccHHHhccCCeEEEeC
Q 012655 297 RVVNALLTQMDKLK-----------SSPNVIILTTSNIT------A-----------------AIDIAFVDRADIKAYVG 342 (459)
Q Consensus 297 ~~~~~ll~~l~~l~-----------~~~~viIi~Ttn~~------~-----------------~ld~al~~R~~~~i~~~ 342 (459)
.+++.|+..|+.-. ...++.+|+++|.- . .+...+++|||..+.++
T Consensus 310 ~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~ 389 (499)
T TIGR00368 310 SVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVP 389 (499)
T ss_pred HHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEc
Confidence 45566666664311 12468888888863 1 36788999999999999
Q ss_pred CCCHHHH-------------HHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHH
Q 012655 343 PPTLQAR-------------YEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAA 409 (459)
Q Consensus 343 ~P~~~~r-------------~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la 409 (459)
.++..+. ..+.+..-....+ +.+.. ... ....+.+..+...+........+.+-+
T Consensus 390 ~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R---~~~~~---~~~------~N~~l~~~~l~~~~~l~~~~~~~l~~a 457 (499)
T TIGR00368 390 LLPPEKLLSTGSGESSAEVKQRVIKAREIQNIR---YEKFA---NIN------KNADLNSDEIEQFCKLSAIDANDLEGA 457 (499)
T ss_pred CCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHH---hcCCC---CCc------ccccCCHHHHHhhcCCCHHHHHHHHHH
Confidence 8765432 1121111111100 00000 000 011122222322222222233333334
Q ss_pred HHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHH
Q 012655 410 EACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVI 447 (459)
Q Consensus 410 ~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~ 447 (459)
....++|.|...++...| .|-..+...++.+|+.+|+.
T Consensus 458 ~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 458 LNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 444679999999999999 66677899999999999985
No 146
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=4.5e-11 Score=128.56 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=109.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc-------CCCC--
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-------SRYP-- 227 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-------~~~~-- 227 (459)
.|++++|++.+++.|...+.. |-- +..+|||||+|+|||++|+.+|+.+..... ....
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~-------~~l------~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIAT-------NKL------AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHc-------CCC------CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 599999999999998888753 211 345899999999999999999999853210 0000
Q ss_pred -------cceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHH
Q 012655 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (459)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (459)
+..++++++.+. .+...++.+...+.... ......+++|||++.+.. ...+
T Consensus 82 ~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P-~~~~~KVvIIdea~~Ls~---------------~a~n 139 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPP-QIGKYKIYIIDEVHMLSQ---------------AAFN 139 (614)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCc-ccCCcEEEEEECcccCCH---------------HHHH
Confidence 112233333211 11233444444433211 123457999999988744 4578
Q ss_pred HHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 301 ~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
.|+..|+.. ...+++|.+++....+-+.+++|+ ..+.|.+++.++....++..+.+
T Consensus 140 aLLK~LEep--p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~ 195 (614)
T PRK14971 140 AFLKTLEEP--PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASK 195 (614)
T ss_pred HHHHHHhCC--CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHH
Confidence 899998873 344555555555678888999998 67899999998888888877765
No 147
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7e-11 Score=125.15 Aligned_cols=211 Identities=30% Similarity=0.398 Sum_probs=166.9
Q ss_pred HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHH
Q 012655 179 LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKI 258 (459)
Q Consensus 179 ~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~ 258 (459)
..+...+..+ .++++++||||+|||+++++++.. +..+ ..+++....+++.+++......+|..+
T Consensus 8 ~~~~~~~~~~-----~~~v~~~g~~~~~~t~~~~~~a~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~a 72 (494)
T COG0464 8 ELFKKLGIEP-----PKGVLLHGPPGTGKTLLARALANE-GAEF---------LSINGPEILSKYVGESELRLRELFEEA 72 (494)
T ss_pred HHHHHhCCCC-----CCCceeeCCCCCchhHHHHHHHhc-cCcc---------cccCcchhhhhhhhHHHHHHHHHHHHH
Confidence 3455556555 788999999999999999999998 3322 667888999999999999999999998
Q ss_pred HHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHh--ccCC
Q 012655 259 QEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRAD 336 (459)
Q Consensus 259 ~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~--~R~~ 336 (459)
... .++++++||++.+...+.. .......+++..++..++.+. .+.+++++.+|.+..+++++. .||+
T Consensus 73 ~~~-----~~~ii~~d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~ 142 (494)
T COG0464 73 EKL-----APSIIFIDEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFD 142 (494)
T ss_pred HHh-----CCCeEeechhhhcccCccc----cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccc
Confidence 874 6799999999999998765 222345688899999999988 444888889999999999988 8999
Q ss_pred eEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCC
Q 012655 337 IKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLS 416 (459)
Q Consensus 337 ~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~S 416 (459)
..+.++.|+...+.+|+........... ...+..++..+.|++
T Consensus 143 ~~~~~~~~~~~~~~ei~~~~~~~~~~~~-------------------------------------~~~~~~~a~~~~~~~ 185 (494)
T COG0464 143 REIEVNLPDEAGRLEILQIHTRLMFLGP-------------------------------------PGTGKTLAARTVGKS 185 (494)
T ss_pred eeeecCCCCHHHHHHHHHHHHhcCCCcc-------------------------------------cccHHHHHHhcCCcc
Confidence 9999999999999888887766541100 113778899999999
Q ss_pred hHHHhchHHHHHHh--h------cCCCCCCHHHHHHHHHHHHH
Q 012655 417 GRSLRKLPFLAHAA--L------ANPNGCDPSKFLLTVIDTAR 451 (459)
Q Consensus 417 gr~L~~L~~~a~a~--~------~~~~~it~~d~~~Al~~~~~ 451 (459)
+.++..++..+... . .....++.+++.+++.....
T Consensus 186 ~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 186 GADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 99999999666222 1 22345788888888877644
No 148
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.27 E-value=2.1e-10 Score=120.46 Aligned_cols=167 Identities=21% Similarity=0.318 Sum_probs=104.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHH--HHHHH----h--------------cCCCCccccCCcEEEEecCCCChHHHHHHHHHH
Q 012655 157 MWESLIYESGLKQRLLHYAAS--ALMFA----E--------------KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~--~~~~~----~--------------~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~ 216 (459)
.|.+|.+++.+-+.++.+++. +..|. + .+.++..-+..+.+||+||||.||||||..+|+
T Consensus 269 ~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAk 348 (877)
T KOG1969|consen 269 KFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAK 348 (877)
T ss_pred HHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHH
Confidence 477899999999999888874 23444 1 122333334467899999999999999999999
Q ss_pred HhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHH---HHhcccchhhhhhhhHhHHHhhhhccCCCCCC
Q 012655 217 KLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEM---VEEENNLVFVLIDEVESLAAARKAALSGSEPS 293 (459)
Q Consensus 217 ~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~---~~~~~~~~illIDEid~l~~~r~~~ls~~e~~ 293 (459)
..|+.. ++||+++-.+ ...+......+... +....+|.||+|||||--.
T Consensus 349 qaGYsV---------vEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------------- 400 (877)
T KOG1969|consen 349 QAGYSV---------VEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------------- 400 (877)
T ss_pred hcCceE---------EEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-------------
Confidence 998766 9999987432 22222222222111 1123689999999998321
Q ss_pred chHHHHHHHHHHHHhhc----------------CCCC---EEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHH
Q 012655 294 DSIRVVNALLTQMDKLK----------------SSPN---VIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEI 352 (459)
Q Consensus 294 ~~~~~~~~ll~~l~~l~----------------~~~~---viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~I 352 (459)
...++.++..+..-. +.++ --||+.+|. ..-++++ +-+-.+++|.+|......+=
T Consensus 401 --~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~R 476 (877)
T KOG1969|consen 401 --RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVER 476 (877)
T ss_pred --HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHH
Confidence 344555555554110 0111 126666674 3456666 55778888888887655543
Q ss_pred HHH
Q 012655 353 LRS 355 (459)
Q Consensus 353 l~~ 355 (459)
|+.
T Consensus 477 L~~ 479 (877)
T KOG1969|consen 477 LNE 479 (877)
T ss_pred HHH
Confidence 333
No 149
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.25 E-value=5.9e-11 Score=103.02 Aligned_cols=127 Identities=30% Similarity=0.453 Sum_probs=78.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
++.++|+||||+|||++++.+++.+. ..+..++.+++............ .................+.++++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~------~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lil 90 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF------RPGAPFLYLNASDLLEGLVVAEL--FGHFLVRLLFELAEKAKPGVLFI 90 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh------cCCCCeEEEehhhhhhhhHHHHH--hhhhhHhHHHHhhccCCCeEEEE
Confidence 46799999999999999999999984 12234467776665432221111 00000111111112246789999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC----CCCEEEEEecCCCC--cccHHHhccCCeEEEeCC
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS----SPNVIILTTSNITA--AIDIAFVDRADIKAYVGP 343 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~----~~~viIi~Ttn~~~--~ld~al~~R~~~~i~~~~ 343 (459)
||++.+.. .....++..+..... ..++.+|+++|... .++..+.+|++..+.+++
T Consensus 91 De~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 91 DEIDSLSR---------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred eChhhhhH---------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 99998732 223455555555433 35677777777766 678889999987777653
No 150
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.4e-11 Score=116.61 Aligned_cols=170 Identities=24% Similarity=0.244 Sum_probs=105.0
Q ss_pred ccccCccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccC-CcEEEEecCCCChHHHHHHHHHHHhcccccC
Q 012655 146 EWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSW-NRIVLLHGPPGTGKTSLCKALAQKLSIRFSS 224 (459)
Q Consensus 146 ~~~lP~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~-~~~vLL~GPpGtGKTtLaralA~~l~~~~~~ 224 (459)
+...|..-...+-+-+||++..|+.|.-.+.+.-..-...-+...+.- ..+|||.||+|||||.||+.+|+.++.||
T Consensus 48 ~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPF-- 125 (408)
T COG1219 48 ELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPF-- 125 (408)
T ss_pred cCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCe--
Confidence 334555555556667889999988775444432111110001111211 24699999999999999999999999988
Q ss_pred CCCcceEEEEcccccc-ccccchhhH-HHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHH
Q 012655 225 RYPQCQLVEVNAHSLF-SKWFSESGK-LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL 302 (459)
Q Consensus 225 ~~~~~~~i~i~~~~l~-~~~~~e~~~-~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~l 302 (459)
..-++.++. ..|+|+.-. .+.++.+.+..-++ .....|++|||||+++.+.....-.-+ -....++++|
T Consensus 126 -------aiADATtLTEAGYVGEDVENillkLlqaadydV~-rAerGIIyIDEIDKIarkSeN~SITRD-VSGEGVQQAL 196 (408)
T COG1219 126 -------AIADATTLTEAGYVGEDVENILLKLLQAADYDVE-RAERGIIYIDEIDKIARKSENPSITRD-VSGEGVQQAL 196 (408)
T ss_pred -------eeccccchhhccccchhHHHHHHHHHHHcccCHH-HHhCCeEEEechhhhhccCCCCCcccc-cCchHHHHHH
Confidence 556777776 467777543 34455554332222 235689999999999886532211111 2235788999
Q ss_pred HHHHHhhc-----------CCCCEEEEEecCCCCc
Q 012655 303 LTQMDKLK-----------SSPNVIILTTSNITAA 326 (459)
Q Consensus 303 l~~l~~l~-----------~~~~viIi~Ttn~~~~ 326 (459)
|+.+++-. ++..++-+-|+|....
T Consensus 197 LKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFI 231 (408)
T COG1219 197 LKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFI 231 (408)
T ss_pred HHHHcCceeccCCCCCCCCCccceEEEcccceeEE
Confidence 99998542 1223677777776543
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=9.1e-11 Score=126.40 Aligned_cols=172 Identities=24% Similarity=0.283 Sum_probs=118.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.++|+++....+.+. +...+.|+....-+ -...||.||+|+|||-||++||..+. .....++.++.++
T Consensus 491 ~rViGQd~AV~avs~a----IrraRaGL~dp~rP-igsFlF~GPTGVGKTELAkaLA~~Lf------g~e~aliR~DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDA----IRRARAGLGDPNRP-IGSFLFLGPTGVGKTELAKALAEALF------GDEQALIRIDMSE 559 (786)
T ss_pred cceeChHHHHHHHHHH----HHHHhcCCCCCCCC-ceEEEeeCCCcccHHHHHHHHHHHhc------CCCccceeechHH
Confidence 4566666665555555 44566676642111 23678899999999999999999983 2334558888877
Q ss_pred ccccc-----cchh----hHH-HHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh
Q 012655 239 LFSKW-----FSES----GKL-VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (459)
Q Consensus 239 l~~~~-----~~e~----~~~-v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~ 308 (459)
+..+. .|.. +.. -+.+-..++. ...+||++||||+.- ++++|-||..||.
T Consensus 560 y~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr-----~PySViLlDEIEKAH---------------pdV~nilLQVlDd 619 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRR-----KPYSVILLDEIEKAH---------------PDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHHHHhCCCCCCceeccccchhHhhhc-----CCCeEEEechhhhcC---------------HHHHHHHHHHhcC
Confidence 65322 1111 100 1122222332 456899999999764 4789999999983
Q ss_pred h---------cCCCCEEEEEecCCCCc----------------------------ccHHHhccCCeEEEeCCCCHHHHHH
Q 012655 309 L---------KSSPNVIILTTSNITAA----------------------------IDIAFVDRADIKAYVGPPTLQARYE 351 (459)
Q Consensus 309 l---------~~~~~viIi~Ttn~~~~----------------------------ld~al~~R~~~~i~~~~P~~~~r~~ 351 (459)
= ....+++||+|||.-.. +.+.|+.|+|.++.|.+.+.+...+
T Consensus 620 GrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~ 699 (786)
T COG0542 620 GRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLER 699 (786)
T ss_pred CeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHH
Confidence 2 23467999999995421 2567889999999999999999999
Q ss_pred HHHHHHHHHH
Q 012655 352 ILRSCLQELI 361 (459)
Q Consensus 352 Il~~~l~~~~ 361 (459)
|+...+.++.
T Consensus 700 Iv~~~L~~l~ 709 (786)
T COG0542 700 IVDLQLNRLA 709 (786)
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 152
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.24 E-value=1.5e-10 Score=124.89 Aligned_cols=170 Identities=18% Similarity=0.278 Sum_probs=104.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc-CCCCcceEEEEc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQCQLVEVN 235 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~~~i~i~ 235 (459)
.|++++|++...+.+...+.. +. +..++|+|||||||||+|+++++.....-. ...++..++.++
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~-------~~-------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS-------PF-------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc-------CC-------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 488899998887776554321 11 345999999999999999999987632111 112356678888
Q ss_pred cccccc-------cccchhhHHHHHHHHHHHHHHH------------hcccchhhhhhhhHhHHHhhhhccCCCCCCchH
Q 012655 236 AHSLFS-------KWFSESGKLVAKLFQKIQEMVE------------EENNLVFVLIDEVESLAAARKAALSGSEPSDSI 296 (459)
Q Consensus 236 ~~~l~~-------~~~~e~~~~v~~~f~~~~~~~~------------~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~ 296 (459)
+..+.. .+++... ...++.+...+. ......+|||||++.|...
T Consensus 218 ~~~l~~d~~~i~~~llg~~~---~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------- 280 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVH---DPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-------------- 280 (615)
T ss_pred chhccCCHHHHhHHhcCCcc---HHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------------
Confidence 876521 1111100 011111111111 0123469999998877543
Q ss_pred HHHHHHHHHHHhhc--------------------------CCCCEEEE-EecCCCCcccHHHhccCCeEEEeCCCCHHHH
Q 012655 297 RVVNALLTQMDKLK--------------------------SSPNVIIL-TTSNITAAIDIAFVDRADIKAYVGPPTLQAR 349 (459)
Q Consensus 297 ~~~~~ll~~l~~l~--------------------------~~~~viIi-~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r 349 (459)
.+..|+..++.-. ....++++ +|++.+..+++++++||. .+++++++.++.
T Consensus 281 -~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi 358 (615)
T TIGR02903 281 -LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDI 358 (615)
T ss_pred -HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHH
Confidence 3344444443210 11234444 566777889999999995 567899999999
Q ss_pred HHHHHHHHHH
Q 012655 350 YEILRSCLQE 359 (459)
Q Consensus 350 ~~Il~~~l~~ 359 (459)
.+|++.++.+
T Consensus 359 ~~Il~~~a~~ 368 (615)
T TIGR02903 359 ALIVLNAAEK 368 (615)
T ss_pred HHHHHHHHHH
Confidence 9999998775
No 153
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.22 E-value=3.6e-10 Score=118.18 Aligned_cols=218 Identities=19% Similarity=0.197 Sum_probs=120.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc------------------ccccchhh-HHHHH-
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF------------------SKWFSESG-KLVAK- 253 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~------------------~~~~~e~~-~~v~~- 253 (459)
+.+++|+||||+|||++++.+++.+...- +-..+....+. +...+.+. ..++.
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~-------g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg 282 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLS-------NEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGG 282 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCC-------CcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCC
Confidence 67899999999999999999999874221 11111111111 00000010 01110
Q ss_pred HHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-----------CCCCEEEEEecC
Q 012655 254 LFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-----------SSPNVIILTTSN 322 (459)
Q Consensus 254 ~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-----------~~~~viIi~Ttn 322 (459)
...+. ..+ ......++||||++.+.. .++..|+..|+.-. ...++.+|+|+|
T Consensus 283 ~~~~p-G~l-~~A~gGvLfLDEi~e~~~---------------~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~N 345 (506)
T PRK09862 283 AIPGP-GEI-SLAHNGVLFLDELPEFER---------------RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMN 345 (506)
T ss_pred ceehh-hHh-hhccCCEEecCCchhCCH---------------HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeec
Confidence 00000 011 113457999999976543 45666666664211 134689999999
Q ss_pred CCC---------------------cccHHHhccCCeEEEeCCCCHHHH----------HHHHHHHHHHHHHhccccCCcc
Q 012655 323 ITA---------------------AIDIAFVDRADIKAYVGPPTLQAR----------YEILRSCLQELIRTGIISNFQD 371 (459)
Q Consensus 323 ~~~---------------------~ld~al~~R~~~~i~~~~P~~~~r----------~~Il~~~l~~~~~~~~~~~~~~ 371 (459)
... .+..++++|||..+.+++++.++. .++-+....-. .++
T Consensus 346 P~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar----~~q---- 417 (506)
T PRK09862 346 PSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAAR----ERQ---- 417 (506)
T ss_pred CccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHH----HHH----
Confidence 753 367789999999999998865421 11211111000 000
Q ss_pred ccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHH
Q 012655 372 CDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVID 448 (459)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~ 448 (459)
...-..+...+....+...+........+.+-+....|+|.|...+++..| .|...+...++.+|+.+|+..
T Consensus 418 -----~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 418 -----FKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred -----HHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 000001112222223332222222233333344456789999999999999 666789999999999999864
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.21 E-value=2.9e-10 Score=127.36 Aligned_cols=174 Identities=24% Similarity=0.279 Sum_probs=114.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
+...++|++...+.+...+... ..|+.... .+...++|+||+|||||++|++||..+. .....++.+++
T Consensus 563 l~~~v~GQ~~av~~v~~~i~~~----~~gl~~~~-~p~~~~Lf~Gp~GvGKt~lA~~La~~l~------~~~~~~i~~d~ 631 (852)
T TIGR03346 563 LHERVVGQDEAVEAVSDAIRRS----RAGLSDPN-RPIGSFLFLGPTGVGKTELAKALAEFLF------DDEDAMVRIDM 631 (852)
T ss_pred hhcccCCChHHHHHHHHHHHHH----hccCCCCC-CCCeEEEEEcCCCCCHHHHHHHHHHHhc------CCCCcEEEEec
Confidence 5667888888888877776542 23322100 0124589999999999999999999873 12235577777
Q ss_pred ccccccc-----cchh----hH-HHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHH
Q 012655 237 HSLFSKW-----FSES----GK-LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (459)
Q Consensus 237 ~~l~~~~-----~~e~----~~-~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (459)
+.+.... ++.. +. ..+.+...++. ...++|+||||+.+.+ .+.+.|+..|
T Consensus 632 s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~-----~p~~vlllDeieka~~---------------~v~~~Ll~~l 691 (852)
T TIGR03346 632 SEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR-----KPYSVVLFDEVEKAHP---------------DVFNVLLQVL 691 (852)
T ss_pred hhhcccchHHHhcCCCCCccCcccccHHHHHHHc-----CCCcEEEEeccccCCH---------------HHHHHHHHHH
Confidence 6553221 1110 00 01112222222 3457999999997643 6778888888
Q ss_pred Hhh--c-------CCCCEEEEEecCCCCc-------------------------ccHHHhccCCeEEEeCCCCHHHHHHH
Q 012655 307 DKL--K-------SSPNVIILTTSNITAA-------------------------IDIAFVDRADIKAYVGPPTLQARYEI 352 (459)
Q Consensus 307 ~~l--~-------~~~~viIi~Ttn~~~~-------------------------ld~al~~R~~~~i~~~~P~~~~r~~I 352 (459)
+.- . ...+++||+|||.... +.+.|+.|+|.++.|.+++.+...+|
T Consensus 692 ~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I 771 (852)
T TIGR03346 692 DDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARI 771 (852)
T ss_pred hcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHH
Confidence 642 1 2357889999997321 34668899999999999999999999
Q ss_pred HHHHHHHHH
Q 012655 353 LRSCLQELI 361 (459)
Q Consensus 353 l~~~l~~~~ 361 (459)
+...+..+.
T Consensus 772 ~~l~L~~l~ 780 (852)
T TIGR03346 772 VEIQLGRLR 780 (852)
T ss_pred HHHHHHHHH
Confidence 999888653
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.21 E-value=2.8e-10 Score=127.20 Aligned_cols=172 Identities=23% Similarity=0.308 Sum_probs=113.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCC-cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWN-RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~-~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
-+.++|++...+.+...+.. .+.|+... ..+ ..++|+||+|+|||++|++||+.+-- ....++.++.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~----~~~gl~~~--~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~------~~~~~~~~d~ 575 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRR----ARVGLKNP--NRPIASFLFSGPTGVGKTELTKALASYFFG------SEDAMIRLDM 575 (821)
T ss_pred cCcCcChHHHHHHHHHHHHH----HhhcccCC--CCCceEEEEECCCCCcHHHHHHHHHHHhcC------CccceEEEEc
Confidence 35678888888888776653 22333211 112 24789999999999999999998721 1234566666
Q ss_pred cccccc-----ccchh----h-HHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHH
Q 012655 237 HSLFSK-----WFSES----G-KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (459)
Q Consensus 237 ~~l~~~-----~~~e~----~-~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (459)
.++... ..+.. + ...+.+...++. ...+|++|||+|.+.+ .+.+.|+..|
T Consensus 576 s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-----~p~~VvllDeieka~~---------------~v~~~Llq~l 635 (821)
T CHL00095 576 SEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK-----KPYTVVLFDEIEKAHP---------------DIFNLLLQIL 635 (821)
T ss_pred hhccccccHHHhcCCCCcccCcCccchHHHHHHh-----CCCeEEEECChhhCCH---------------HHHHHHHHHh
Confidence 554321 11110 0 011122333332 3458999999997644 6778888888
Q ss_pred Hhhc---------CCCCEEEEEecCCCCc-------------------------------------ccHHHhccCCeEEE
Q 012655 307 DKLK---------SSPNVIILTTSNITAA-------------------------------------IDIAFVDRADIKAY 340 (459)
Q Consensus 307 ~~l~---------~~~~viIi~Ttn~~~~-------------------------------------ld~al~~R~~~~i~ 340 (459)
+.-+ ...+++||.|||.... +.+.|++|+|.++.
T Consensus 636 e~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~ 715 (821)
T CHL00095 636 DDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIV 715 (821)
T ss_pred ccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEE
Confidence 7421 2467899999885321 23568899999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHH
Q 012655 341 VGPPTLQARYEILRSCLQELI 361 (459)
Q Consensus 341 ~~~P~~~~r~~Il~~~l~~~~ 361 (459)
|.+.+.++..+|+...+.++.
T Consensus 716 F~pL~~~~l~~Iv~~~l~~l~ 736 (821)
T CHL00095 716 FRQLTKNDVWEIAEIMLKNLF 736 (821)
T ss_pred eCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998763
No 156
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.20 E-value=2.9e-10 Score=126.77 Aligned_cols=168 Identities=24% Similarity=0.259 Sum_probs=110.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCc-EEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNR-IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~-~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
+.++|++...+.+.+.+.. .+.|+... ..+. .+||+||+|+|||.+|+++|..+-- ....++.+++.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~----~~~gl~~~--~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~------~~~~~~~~dms 633 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRT----ARAGLEDP--RKPLGVFLLVGPSGVGKTETALALAELLYG------GEQNLITINMS 633 (852)
T ss_pred CeEcChHHHHHHHHHHHHH----HhcCCCCC--CCCceEEEEECCCCCCHHHHHHHHHHHHhC------CCcceEEEeHH
Confidence 4577777777777776643 23344311 1233 4899999999999999999999821 12345677765
Q ss_pred ccccc------------ccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH
Q 012655 238 SLFSK------------WFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (459)
Q Consensus 238 ~l~~~------------~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (459)
++... |+|... -+.+...++. ...+||+|||+|...+ .+.+.|+..
T Consensus 634 e~~~~~~~~~l~g~~~gyvg~~~--~g~L~~~v~~-----~p~svvllDEieka~~---------------~v~~~Llq~ 691 (852)
T TIGR03345 634 EFQEAHTVSRLKGSPPGYVGYGE--GGVLTEAVRR-----KPYSVVLLDEVEKAHP---------------DVLELFYQV 691 (852)
T ss_pred HhhhhhhhccccCCCCCcccccc--cchHHHHHHh-----CCCcEEEEechhhcCH---------------HHHHHHHHH
Confidence 54221 222110 0112222222 4678999999986543 567778888
Q ss_pred HHhhc---------CCCCEEEEEecCCCCc-----------------------------ccHHHhccCCeEEEeCCCCHH
Q 012655 306 MDKLK---------SSPNVIILTTSNITAA-----------------------------IDIAFVDRADIKAYVGPPTLQ 347 (459)
Q Consensus 306 l~~l~---------~~~~viIi~Ttn~~~~-----------------------------ld~al~~R~~~~i~~~~P~~~ 347 (459)
++.-. ...+.+||.|||.... +.++|++|++ ++.|.+.+.+
T Consensus 692 ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e 770 (852)
T TIGR03345 692 FDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDD 770 (852)
T ss_pred hhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHH
Confidence 87432 2257899999885211 4577889997 7889999999
Q ss_pred HHHHHHHHHHHHHH
Q 012655 348 ARYEILRSCLQELI 361 (459)
Q Consensus 348 ~r~~Il~~~l~~~~ 361 (459)
+..+|+...+.++.
T Consensus 771 ~l~~Iv~~~L~~l~ 784 (852)
T TIGR03345 771 VLAAIVRLKLDRIA 784 (852)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 157
>PHA02244 ATPase-like protein
Probab=99.20 E-value=1.2e-10 Score=116.13 Aligned_cols=125 Identities=20% Similarity=0.275 Sum_probs=78.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc----ccccccchhhHHHHHHHHHHHHHHHhcccchhh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS----LFSKWFSESGKLVAKLFQKIQEMVEEENNLVFV 271 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~----l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~il 271 (459)
.|+|+||||||||++|+++|..++.++ +.++... +.+ +....+.....-|-.+. ....++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pf---------v~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~------~~GgvL 184 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDF---------YFMNAIMDEFELKG-FIDANGKFHETPFYEAF------KKGGLF 184 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCE---------EEEecChHHHhhcc-cccccccccchHHHHHh------hcCCEE
Confidence 399999999999999999999998776 5454321 111 11111111101111111 256899
Q ss_pred hhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHH---------hhcCCCCEEEEEecCCC-----------CcccHHH
Q 012655 272 LIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD---------KLKSSPNVIILTTSNIT-----------AAIDIAF 331 (459)
Q Consensus 272 lIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~---------~l~~~~~viIi~Ttn~~-----------~~ld~al 331 (459)
+|||++.+... ++..|...++ ....+.++.+|+|+|.. ..++.++
T Consensus 185 iLDEId~a~p~---------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~Al 249 (383)
T PHA02244 185 FIDEIDASIPE---------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGAT 249 (383)
T ss_pred EEeCcCcCCHH---------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHH
Confidence 99999977543 2233333332 22345788999999974 4579999
Q ss_pred hccCCeEEEeCCCCHHHHHHHH
Q 012655 332 VDRADIKAYVGPPTLQARYEIL 353 (459)
Q Consensus 332 ~~R~~~~i~~~~P~~~~r~~Il 353 (459)
++|| ..++++.|+. ....|.
T Consensus 250 lDRF-v~I~~dyp~~-~E~~i~ 269 (383)
T PHA02244 250 LDRF-APIEFDYDEK-IEHLIS 269 (383)
T ss_pred Hhhc-EEeeCCCCcH-HHHHHh
Confidence 9999 6799999984 333444
No 158
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.18 E-value=5.1e-10 Score=120.25 Aligned_cols=228 Identities=20% Similarity=0.173 Sum_probs=130.9
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHH-----HHHHHhcccch
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKI-----QEMVEEENNLV 269 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~-----~~~~~~~~~~~ 269 (459)
.+|||.|+||||||++++++++.++.. ..++.+..+......++.. .+...+..- ...+. .....
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~-------~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~-~A~~G 86 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPI-------MPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLD-EAPRG 86 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcC-------CCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCee-eCCCC
Confidence 469999999999999999999987531 1234454322112222211 000000000 00000 12346
Q ss_pred hhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-----------CCCCEEEEEecCCCC---cccHHHhccC
Q 012655 270 FVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-----------SSPNVIILTTSNITA---AIDIAFVDRA 335 (459)
Q Consensus 270 illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-----------~~~~viIi~Ttn~~~---~ld~al~~R~ 335 (459)
+|||||++.+.. ..++.|+..|+.-. ....+.||+|+|..+ .+.+++++||
T Consensus 87 vL~lDEi~rl~~---------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf 151 (589)
T TIGR02031 87 VLYVDMANLLDD---------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRL 151 (589)
T ss_pred cEeccchhhCCH---------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhc
Confidence 999999998865 56677777776321 123578889999875 6889999999
Q ss_pred CeEEEeC-CCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccC
Q 012655 336 DIKAYVG-PPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEG 414 (459)
Q Consensus 336 ~~~i~~~-~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G 414 (459)
+..+.+. .|+.++|.+|++..+........ .........+....+....-.+.+ ..-..+..++.. .|
T Consensus 152 ~l~v~~~~~~~~~er~eil~~~~~~~~~~~~-----~~~~~~~~~i~~ar~~~~~V~i~~-----~~~~~l~~~~~~-~g 220 (589)
T TIGR02031 152 ALHVSLEDVASQDLRVEIVRRERCNEVFRMN-----DELELLRGQIEAARELLPQVTISA-----EQVKELVLTAAS-LG 220 (589)
T ss_pred cCeeecCCCCCHHHHHHHHHHHHHhhhhhcc-----hhhHHHHHHHHHHHHhcCCccCCH-----HHHHHHHHHHHH-cC
Confidence 9988775 45677899999987743211000 000000011111111111111111 011123333332 34
Q ss_pred C-ChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 012655 415 L-SGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKERSELP 458 (459)
Q Consensus 415 ~-Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~~~~~ 458 (459)
. |.|..-.+...| +|...++..++.+|+..|+..+..+.....|
T Consensus 221 v~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~~~~p 267 (589)
T TIGR02031 221 ISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRATRLP 267 (589)
T ss_pred CCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhccCCC
Confidence 4 356666666666 7778899999999999999988877765444
No 159
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=1.3e-10 Score=117.58 Aligned_cols=169 Identities=21% Similarity=0.258 Sum_probs=106.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc-------------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------------- 223 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------------- 223 (459)
.+++|+|++.+++.|.+.+.. |-- +..+||+||+|+||+++|.++|+.+-..-.
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~-------~rl------~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l 83 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRS-------GRL------HHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL 83 (365)
T ss_pred chhhccChHHHHHHHHHHHHc-------CCC------CceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 478999999999999887654 211 345999999999999999999998832110
Q ss_pred ---CCCCcceEEEEcccc-cc--ccccchh---------hHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccC
Q 012655 224 ---SRYPQCQLVEVNAHS-LF--SKWFSES---------GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALS 288 (459)
Q Consensus 224 ---~~~~~~~~i~i~~~~-l~--~~~~~e~---------~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls 288 (459)
...+.|..+.-..|. +. .....+. -..++.+.+.+... .....+.|++|||+|.+..
T Consensus 84 ~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~------- 155 (365)
T PRK07471 84 AIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNA------- 155 (365)
T ss_pred cCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCH-------
Confidence 000111111111111 00 0000011 12233332222211 1124678999999997754
Q ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Q 012655 289 GSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357 (459)
Q Consensus 289 ~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l 357 (459)
...|.|++.++. +.+++++|.+|+.++.+.+.+++|+ ..+.+++|+.++..+++....
T Consensus 156 --------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 156 --------NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred --------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence 567889999876 3345555556666777888899998 788999999999988887643
No 160
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.16 E-value=2.1e-09 Score=115.82 Aligned_cols=50 Identities=32% Similarity=0.411 Sum_probs=42.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
.+|++++|+++.++.+...+.. +++++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4799999999999887776653 3459999999999999999999999653
No 161
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.14 E-value=2.7e-09 Score=104.04 Aligned_cols=93 Identities=17% Similarity=0.016 Sum_probs=67.0
Q ss_pred CCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHH
Q 012655 324 TAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYK 403 (459)
Q Consensus 324 ~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 403 (459)
|+-++..+++|. .++...+.+.++..+|++...++.- + . + .+.
T Consensus 342 PhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~---i----------~---------------l--------~~~ 384 (450)
T COG1224 342 PHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEED---I----------E---------------L--------SDD 384 (450)
T ss_pred CCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhc---c----------c---------------c--------CHH
Confidence 344688899998 8888999999999999999888731 0 0 0 122
Q ss_pred HHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHH
Q 012655 404 QLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKE 453 (459)
Q Consensus 404 ~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~ 453 (459)
.|..++....--|-|.--+|..-| .|...+..++..+|+.+|-.-+....
T Consensus 385 Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~k 436 (450)
T COG1224 385 ALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLDVK 436 (450)
T ss_pred HHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhhHH
Confidence 366777766666777777776666 56667788999999998876665443
No 162
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.14 E-value=1.4e-09 Score=105.89 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=112.4
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEE-Ecc----cccccc---ccc-----hh-hHHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE-VNA----HSLFSK---WFS-----ES-GKLVAKLFQKIQE 260 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~-i~~----~~l~~~---~~~-----e~-~~~v~~~f~~~~~ 260 (459)
..++|+||+|+||||+++.+++.+...- ..... +++ .++... .++ .. ......+.+.+..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~------~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQER------VVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCC------eEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3589999999999999999999875210 00011 111 011000 001 00 0111222222222
Q ss_pred HHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-CC-CCEEEEEecCC--CCcc----cHHHh
Q 012655 261 MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-SS-PNVIILTTSNI--TAAI----DIAFV 332 (459)
Q Consensus 261 ~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-~~-~~viIi~Ttn~--~~~l----d~al~ 332 (459)
.. ....+.+++|||++.+... ....+. .+.... .. ..+.|+.+... ...+ ...+.
T Consensus 118 ~~-~~~~~~vliiDe~~~l~~~---------------~~~~l~-~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~ 180 (269)
T TIGR03015 118 QF-AAGKRALLVVDEAQNLTPE---------------LLEELR-MLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLR 180 (269)
T ss_pred HH-hCCCCeEEEEECcccCCHH---------------HHHHHH-HHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHH
Confidence 11 1345678999999876431 122222 222211 12 22333333322 1112 12456
Q ss_pred ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHc
Q 012655 333 DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEAC 412 (459)
Q Consensus 333 ~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~ 412 (459)
+|+...+.+++.+.++..+++...+........ . .+ ....+..|++.|
T Consensus 181 ~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~---------~---------------~~--------~~~~~~~i~~~s 228 (269)
T TIGR03015 181 QRIIASCHLGPLDREETREYIEHRLERAGNRDA---------P---------------VF--------SEGAFDAIHRFS 228 (269)
T ss_pred hheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCC---------C---------------Cc--------CHHHHHHHHHHc
Confidence 788888899999999999999888875311000 0 01 112478899999
Q ss_pred cCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHH
Q 012655 413 EGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 413 ~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~ 449 (459)
.|. +|.+..++..+ .|...+...++.+++..+++..
T Consensus 229 ~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 229 RGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 996 56699999888 4455677899999999998774
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.14 E-value=4.6e-10 Score=125.48 Aligned_cols=174 Identities=24% Similarity=0.305 Sum_probs=111.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCC-cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWN-RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~-~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
+.+.++|++...+.+...+... ..|.... ..+ ..++|+||+|||||++|++|++.+.. ....++.++
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~----~~gl~~~--~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~------~~~~~i~id 633 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRS----RAGLSDP--NRPIGSFLFLGPTGVGKTELCKALANFMFD------SDDAMVRID 633 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHH----HhcccCC--CCCCceEEEECCCCCCHHHHHHHHHHHhhc------CCCcEEEEE
Confidence 3456778887777777766532 2222110 001 35899999999999999999998731 223457777
Q ss_pred cccccccc-----cchh----hHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHH
Q 012655 236 AHSLFSKW-----FSES----GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (459)
Q Consensus 236 ~~~l~~~~-----~~e~----~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (459)
+..+.... +|.. +..-...+..+.. ....++|+|||++.+.. .+.+.|+..+
T Consensus 634 ~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~----~~p~~vLllDEieka~~---------------~v~~~Ll~il 694 (857)
T PRK10865 634 MSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVR----RRPYSVILLDEVEKAHP---------------DVFNILLQVL 694 (857)
T ss_pred hHHhhhhhhHHHHhCCCCcccccchhHHHHHHHH----hCCCCeEEEeehhhCCH---------------HHHHHHHHHH
Confidence 76653211 1100 0000111111111 13448999999986643 5677888887
Q ss_pred Hhh--c-------CCCCEEEEEecCCCC-------------------------cccHHHhccCCeEEEeCCCCHHHHHHH
Q 012655 307 DKL--K-------SSPNVIILTTSNITA-------------------------AIDIAFVDRADIKAYVGPPTLQARYEI 352 (459)
Q Consensus 307 ~~l--~-------~~~~viIi~Ttn~~~-------------------------~ld~al~~R~~~~i~~~~P~~~~r~~I 352 (459)
+.- . ...+.+||+|||... .+.++|++|+|.++.+.+++.+...+|
T Consensus 695 e~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~I 774 (857)
T PRK10865 695 DDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASI 774 (857)
T ss_pred hhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHH
Confidence 642 1 234678889999731 135788999999999999999999999
Q ss_pred HHHHHHHHH
Q 012655 353 LRSCLQELI 361 (459)
Q Consensus 353 l~~~l~~~~ 361 (459)
++.++.++.
T Consensus 775 v~~~L~~l~ 783 (857)
T PRK10865 775 AQIQLQRLY 783 (857)
T ss_pred HHHHHHHHH
Confidence 999998863
No 164
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=7.2e-10 Score=110.56 Aligned_cols=163 Identities=15% Similarity=0.204 Sum_probs=105.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccc-cCCCCcceEEEEc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLVEVN 235 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~~i~i~ 235 (459)
.|++++|++.+++.+...+.. |-- +..+||+||+|+|||++|+.+|+.+-... ....++ +..+.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------~~~------~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D--~~~~~ 66 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------NRF------SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVD--IIEFK 66 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------CCC------CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCC--eEEec
Confidence 388999999999988877642 211 24589999999999999999999873221 011122 22222
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCE
Q 012655 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV 315 (459)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~v 315 (459)
..+ +. .-....++.+...+.... ......|++||++|.+.. ...|+|++.++. +..++
T Consensus 67 ~~~--~~--~i~v~~ir~~~~~~~~~p-~~~~~kv~iI~~ad~m~~---------------~a~naLLK~LEe--pp~~t 124 (313)
T PRK05564 67 PIN--KK--SIGVDDIRNIIEEVNKKP-YEGDKKVIIIYNSEKMTE---------------QAQNAFLKTIEE--PPKGV 124 (313)
T ss_pred ccc--CC--CCCHHHHHHHHHHHhcCc-ccCCceEEEEechhhcCH---------------HHHHHHHHHhcC--CCCCe
Confidence 210 00 011233444444332211 123567999999987754 457899999887 33444
Q ss_pred EEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Q 012655 316 IILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357 (459)
Q Consensus 316 iIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l 357 (459)
++|.+++.++.+-+.+++|+ ..+.+.+|+.++...++...+
T Consensus 125 ~~il~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 125 FIILLCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred EEEEEeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 44444466788888999999 788999999988877776543
No 165
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.6e-09 Score=102.50 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=60.8
Q ss_pred cchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--------CCCCEEEEEecC----CCCcccHHHhcc
Q 012655 267 NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--------SSPNVIILTTSN----ITAAIDIAFVDR 334 (459)
Q Consensus 267 ~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~--------~~~~viIi~Ttn----~~~~ld~al~~R 334 (459)
+..|+||||||.++.+... |+..-....++..||-.+.+-. +..++++|++.. .|..|-+.+.+|
T Consensus 250 ~~GIvFIDEIDKIa~~~~~---g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGR 326 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGS---GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGR 326 (444)
T ss_pred hcCeEEEehhhHHHhcCCC---CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCC
Confidence 4578999999999886542 2211222455666777766431 234577777643 567777889999
Q ss_pred CCeEEEeCCCCHHHHHHHHHH
Q 012655 335 ADIKAYVGPPTLQARYEILRS 355 (459)
Q Consensus 335 ~~~~i~~~~P~~~~r~~Il~~ 355 (459)
|.+.+++...+.+..+.||..
T Consensus 327 fPIRVEL~~Lt~~Df~rILte 347 (444)
T COG1220 327 FPIRVELDALTKEDFERILTE 347 (444)
T ss_pred CceEEEcccCCHHHHHHHHcC
Confidence 999999999999998888654
No 166
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.4e-09 Score=109.54 Aligned_cols=167 Identities=17% Similarity=0.243 Sum_probs=104.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccc----cCC---CC--
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF----SSR---YP-- 227 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~----~~~---~~-- 227 (459)
.++.++|++.+++.|...+.. |-- +..+||+||+|+|||++|+.+|+.+...- ... .+
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~-------grl------~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~ 87 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE-------GKL------HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDP 87 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc-------CCC------CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCC
Confidence 478999999999999887653 211 23599999999999999999999985410 000 00
Q ss_pred cc---eEEEEccc-ccc--ccccch---------hhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCC
Q 012655 228 QC---QLVEVNAH-SLF--SKWFSE---------SGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEP 292 (459)
Q Consensus 228 ~~---~~i~i~~~-~l~--~~~~~e---------~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~ 292 (459)
.| ..+.-..| ++. .....+ +...++.+.+..... .......|++|||+|.+..
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~-~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQT-SGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhc-cccCCceEEEEEchhhcCH-----------
Confidence 01 11100000 110 000000 012233222222111 1124567999999998854
Q ss_pred CchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHH
Q 012655 293 SDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRS 355 (459)
Q Consensus 293 ~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~ 355 (459)
...|+|++.++.. ..++++|..++.+..+.+.+++|+ ..+.+++|+.++..++++.
T Consensus 156 ----~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 156 ----NAANAILKTLEEP--PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSH 211 (351)
T ss_pred ----HHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHH
Confidence 4578899999873 334444444455777889999999 7999999999999999887
No 167
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1.1e-09 Score=108.78 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=107.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccc-cCCCCcceEEEEc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLVEVN 235 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~~i~i~ 235 (459)
.|++++|++.+++.|...+... .+ +..+||+||.|+||+++|+++|+.+-..- ......+.+...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------rl-------~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------RI-------APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------CC-------CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 5899999999999998887541 11 24599999999999999999999974321 0001112211112
Q ss_pred ccccc---------cccc-----chh-----------hHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCC
Q 012655 236 AHSLF---------SKWF-----SES-----------GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGS 290 (459)
Q Consensus 236 ~~~l~---------~~~~-----~e~-----------~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~ 290 (459)
-.++. ++.. ... -..++.+.+.+... .......|++||++|.+..
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~-p~~~~~kVvII~~ae~m~~--------- 138 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRP-PLEAPRKVVVIEDAETMNE--------- 138 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccC-cccCCceEEEEEchhhcCH---------
Confidence 11211 0000 000 01233332222211 0124567999999988754
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Q 012655 291 EPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357 (459)
Q Consensus 291 e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l 357 (459)
...|+|++.|+... ++++|..++.++.+-+.+++|+ ..+.|++++.++..++++...
T Consensus 139 ------~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 139 ------AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ------HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhh
Confidence 56789999998843 3344445567788989999998 888999999999988888653
No 168
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=4.7e-10 Score=112.52 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=103.3
Q ss_pred hhhhhhh-hhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccc--cC----CCCcc
Q 012655 157 MWESLIY-ESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF--SS----RYPQC 229 (459)
Q Consensus 157 ~~~~li~-~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~--~~----~~~~~ 229 (459)
.|++++| ++.+.+.|...+.. |-- +..+||+||+|+|||++|+++|+.+-..- .. ....|
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------~~l------~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------NRL------SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------CCC------CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4899999 88888888776542 211 24589999999999999999999974321 00 00111
Q ss_pred eEEEEcccccccccc--ch--hhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH
Q 012655 230 QLVEVNAHSLFSKWF--SE--SGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (459)
Q Consensus 230 ~~i~i~~~~l~~~~~--~e--~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (459)
..+.-..+.-+.... +. ....++.+...+... .......|++|||+|.+.. ...|+|++.
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~-~~~~~~kvviI~~a~~~~~---------------~a~NaLLK~ 133 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKS-GVESNKKVYIIEHADKMTA---------------SAANSLLKF 133 (329)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhC-CcccCceEEEeehHhhhCH---------------HHHHHHHHH
Confidence 111111110000000 00 112333333322211 0123557999999998854 467899999
Q ss_pred HHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHH
Q 012655 306 MDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRS 355 (459)
Q Consensus 306 l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~ 355 (459)
|+. +.+++++|.+|+.+..+-+++++|+ ..+.+.+|+.++..++++.
T Consensus 134 LEE--Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 134 LEE--PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hcC--CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 987 4455555556667778888999999 8888999998887666653
No 169
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.08 E-value=1e-09 Score=101.20 Aligned_cols=136 Identities=22% Similarity=0.267 Sum_probs=86.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhccc--ccC---------------CCCcceEEEEccccccccccchhhHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIR--FSS---------------RYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQK 257 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~--~~~---------------~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~ 257 (459)
..+||+||+|+|||++++.+++.+... ... ..++...+..++.. .....++.+.+.
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~-------~~~~~i~~i~~~ 87 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQS-------IKVDQVRELVEF 87 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCc-------CCHHHHHHHHHH
Confidence 569999999999999999999998432 000 00111111111100 112344444444
Q ss_pred HHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCe
Q 012655 258 IQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADI 337 (459)
Q Consensus 258 ~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~ 337 (459)
+.... ......+++|||+|.+.. ...+.|+..|+.. ...+++|.+++.+..+.+++.+|+ .
T Consensus 88 ~~~~~-~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~sr~-~ 148 (188)
T TIGR00678 88 LSRTP-QESGRRVVIIEDAERMNE---------------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRSRC-Q 148 (188)
T ss_pred HccCc-ccCCeEEEEEechhhhCH---------------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHhhc-E
Confidence 43321 123567999999998865 3467788888773 234444444555688999999999 6
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q 012655 338 KAYVGPPTLQARYEILRSC 356 (459)
Q Consensus 338 ~i~~~~P~~~~r~~Il~~~ 356 (459)
.+.+++|+.++..++++..
T Consensus 149 ~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc
Confidence 8999999999988887664
No 170
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.07 E-value=1.1e-09 Score=101.04 Aligned_cols=154 Identities=23% Similarity=0.289 Sum_probs=95.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.+.+++|.++...+|.-.+. .|--| +++|.||||+||||-+.++|+++=-+ .-...+.++|+
T Consensus 25 ~l~dIVGNe~tv~rl~via~-------~gnmP-------~liisGpPG~GKTTsi~~LAr~LLG~----~~ke~vLELNA 86 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAK-------EGNMP-------NLIISGPPGTGKTTSILCLARELLGD----SYKEAVLELNA 86 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHH-------cCCCC-------ceEeeCCCCCchhhHHHHHHHHHhCh----hhhhHhhhccC
Confidence 47899999998887765443 34433 39999999999999999999987211 11234577887
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHh-----cccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEE-----ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~-----~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
++-.+ +.-+-.+++.+... .....|+++||.|++... .++++-..|+-...
T Consensus 87 SdeRG---------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g---------------AQQAlRRtMEiyS~ 142 (333)
T KOG0991|consen 87 SDERG---------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG---------------AQQALRRTMEIYSN 142 (333)
T ss_pred ccccc---------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH---------------HHHHHHHHHHHHcc
Confidence 66422 11122222222221 234579999999998762 33445455443332
Q ss_pred CCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHH
Q 012655 312 SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQ 358 (459)
Q Consensus 312 ~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~ 358 (459)
..-+..++|....+-+.+.+|| .++.+...+.. +|+++.+.
T Consensus 143 --ttRFalaCN~s~KIiEPIQSRC-AiLRysklsd~---qiL~Rl~~ 183 (333)
T KOG0991|consen 143 --TTRFALACNQSEKIIEPIQSRC-AILRYSKLSDQ---QILKRLLE 183 (333)
T ss_pred --cchhhhhhcchhhhhhhHHhhh-HhhhhcccCHH---HHHHHHHH
Confidence 3445556788888888889998 44445555543 44444443
No 171
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.06 E-value=1.7e-10 Score=104.56 Aligned_cols=120 Identities=29% Similarity=0.373 Sum_probs=75.2
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (459)
..++|.||+|+|||.+|+++|+.+.. .....++.+++..+... .+....+..+.......... ....||+||
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~-----~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~-~~~gVVllD 75 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV-----GSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGA-EEGGVVLLD 75 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT------SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHH-HHHTEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc-----CCccchHHHhhhccccc--chHHhhhhhhhhcccceeec-cchhhhhhH
Confidence 45899999999999999999999963 12335588898887651 11112222222221111110 133599999
Q ss_pred hhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc---------CCCCEEEEEecCCCCc
Q 012655 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK---------SSPNVIILTTSNITAA 326 (459)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~---------~~~~viIi~Ttn~~~~ 326 (459)
|||+.... .+++-.-....+++.|+..|+.-. ...++++|+|+|.-..
T Consensus 76 EidKa~~~----~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 76 EIDKAHPS----NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp TGGGCSHT----TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred HHhhcccc----ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 99998774 122222233578889999987421 2357999999997654
No 172
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.06 E-value=9e-09 Score=95.61 Aligned_cols=160 Identities=25% Similarity=0.314 Sum_probs=111.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
..+|+|.+..|..|.+-- ..|.+ |.+ -.+|||+|..|||||+|+|++-.+++.. +..+|+|+-+
T Consensus 59 L~~l~Gvd~qk~~L~~NT---~~F~~-G~p------ANnVLLwGaRGtGKSSLVKA~~~e~~~~------glrLVEV~k~ 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNT---EQFAE-GLP------ANNVLLWGARGTGKSSLVKALLNEYADE------GLRLVEVDKE 122 (287)
T ss_pred HHHHhCchHHHHHHHHHH---HHHHc-CCc------ccceEEecCCCCChHHHHHHHHHHHHhc------CCeEEEEcHH
Confidence 578999999998887643 44443 444 3569999999999999999999998643 2346888777
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh--cCCCCE
Q 012655 238 SLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--KSSPNV 315 (459)
Q Consensus 238 ~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l--~~~~~v 315 (459)
++. .+..+++..+. ....-|||+|++- -.+...+-+ .|-..|++= .+..||
T Consensus 123 dl~---------~Lp~l~~~Lr~----~~~kFIlFcDDLS-----------Fe~gd~~yK---~LKs~LeG~ve~rP~NV 175 (287)
T COG2607 123 DLA---------TLPDLVELLRA----RPEKFILFCDDLS-----------FEEGDDAYK---ALKSALEGGVEGRPANV 175 (287)
T ss_pred HHh---------hHHHHHHHHhc----CCceEEEEecCCC-----------CCCCchHHH---HHHHHhcCCcccCCCeE
Confidence 663 23344444433 3456789999841 112122233 344444432 345789
Q ss_pred EEEEecCCCCcccH----------------------HHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 316 IILTTSNITAAIDI----------------------AFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 316 iIi~Ttn~~~~ld~----------------------al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
+|.+|+|+.+.+.+ .+-+||+..+.|.+++.++...|+.++.+..
T Consensus 176 l~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~ 242 (287)
T COG2607 176 LFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHF 242 (287)
T ss_pred EEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHc
Confidence 99999998877631 1348999999999999999999999999875
No 173
>PRK04132 replication factor C small subunit; Provisional
Probab=99.06 E-value=1.5e-09 Score=119.28 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=97.3
Q ss_pred EEEEec--CCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhc-ccchhhh
Q 012655 196 IVLLHG--PPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE-NNLVFVL 272 (459)
Q Consensus 196 ~vLL~G--PpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~-~~~~ill 272 (459)
.-+..| |++.||||+|+++|+++.-. .....++++|+++..+ ...++.+...+....... ....|++
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~----~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGE----NWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcc----cccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 345668 99999999999999997211 1123569999987422 123444443332211111 1346999
Q ss_pred hhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHH
Q 012655 273 IDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEI 352 (459)
Q Consensus 273 IDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~I 352 (459)
|||+|.+.. ..+++|+..|+. +.+++.+|.++|.+..+.+++++|| ..+.|++|+.++....
T Consensus 636 IDEaD~Lt~---------------~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 636 LDEADALTQ---------------DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKR 697 (846)
T ss_pred EECcccCCH---------------HHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHH
Confidence 999998864 457888888876 3467788888899999999999998 8889999999988888
Q ss_pred HHHHHHH
Q 012655 353 LRSCLQE 359 (459)
Q Consensus 353 l~~~l~~ 359 (459)
++..+.+
T Consensus 698 L~~I~~~ 704 (846)
T PRK04132 698 LRYIAEN 704 (846)
T ss_pred HHHHHHh
Confidence 8877664
No 174
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.05 E-value=1e-09 Score=112.22 Aligned_cols=164 Identities=18% Similarity=0.272 Sum_probs=83.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
.+++++.++..+.+...+.. +++++|+||||||||++|+.+|..+..... ......+.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~~----------------~~~iil~GppGtGKT~lA~~la~~l~~~~~--~~~v~~VtFHps 235 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----------------KKNIILQGPPGVGKTFVARRLAYLLTGEKA--PQRVNMVQFHQS 235 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcc--cceeeEEeeccc
Confidence 45566666655555444331 456999999999999999999998843110 001112222211
Q ss_pred ----cccccccch-hh-----HHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhh-hc-cCCCCCCchHH--HHHHHH
Q 012655 238 ----SLFSKWFSE-SG-----KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARK-AA-LSGSEPSDSIR--VVNALL 303 (459)
Q Consensus 238 ----~l~~~~~~e-~~-----~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~-~~-ls~~e~~~~~~--~~~~ll 303 (459)
++...+... .+ ..+..+...+.. ....+.+++|||+++....+. +. ++--+...... .+....
T Consensus 236 ySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~---~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y 312 (459)
T PRK11331 236 YSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKE---QPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTY 312 (459)
T ss_pred ccHHHHhcccCCCCCCeEecCchHHHHHHHHHh---cccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeec
Confidence 111111111 01 112222233322 223678999999987543321 11 11111100000 000000
Q ss_pred HH--HHhhcCCCCEEEEEecCCCC----cccHHHhccCCeEEEeCC
Q 012655 304 TQ--MDKLKSSPNVIILTTSNITA----AIDIAFVDRADIKAYVGP 343 (459)
Q Consensus 304 ~~--l~~l~~~~~viIi~Ttn~~~----~ld~al~~R~~~~i~~~~ 343 (459)
.. .+.+.-..++.||+|.|..+ .+|.|+++|| ..+.+.+
T Consensus 313 ~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 313 SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred cccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecC
Confidence 00 11244567899999999887 6899999999 4455544
No 175
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.04 E-value=8.3e-09 Score=113.07 Aligned_cols=235 Identities=17% Similarity=0.135 Sum_probs=129.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
.-+|||+|+||||||++|+++++......+ .++.+...+++.......-..++... + .+ ..+ ......+++|
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~y--tsG~~~s~vgLTa~~~~~d~~tG~~~---l-e~-GaL-vlAdgGtL~I 563 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIY--TSGKSSSSVGLTASIKFNESDNGRAM---I-QP-GAV-VLANGGVCCI 563 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCcccc--CCCCCCccccccchhhhcccccCccc---c-cC-CcE-EEcCCCeEEe
Confidence 447999999999999999999986542210 11122222222221100000000000 0 00 000 0123478999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh----c-------CCCCEEEEEecCCCC-------------cccH
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL----K-------SSPNVIILTTSNITA-------------AIDI 329 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l----~-------~~~~viIi~Ttn~~~-------------~ld~ 329 (459)
||++.+.. .....|+..|+.- . -+.++.||+++|+.. .+++
T Consensus 564 DEidkms~---------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~ 628 (915)
T PTZ00111 564 DELDKCHN---------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISP 628 (915)
T ss_pred cchhhCCH---------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCCh
Confidence 99998754 3345566666432 1 124689999999852 2578
Q ss_pred HHhccCCeEEE-eCCCCHHHHHHHHHHHHHHHHH-----hcc-----------------ccCCcc---ccCCcccchHHH
Q 012655 330 AFVDRADIKAY-VGPPTLQARYEILRSCLQELIR-----TGI-----------------ISNFQD---CDQSMLPNFSIL 383 (459)
Q Consensus 330 al~~R~~~~i~-~~~P~~~~r~~Il~~~l~~~~~-----~~~-----------------~~~~~~---~~~~~l~~~~~~ 383 (459)
++++|||.++. ++.|+.+.-..|-++.++.... .+. +..... .+...+..|..+
T Consensus 629 ~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~Y 708 (915)
T PTZ00111 629 SLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKF 708 (915)
T ss_pred HHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHH
Confidence 99999998764 4888887777776666643210 000 000000 011124455555
Q ss_pred hhcCCchhHHhhh-h-hhHHHHHHHHHH----------H-----------Hc-----cCCChHHHhchHHHH--HHhhcC
Q 012655 384 KEKLSNPDIQEAD-R-SQHFYKQLLEAA----------E-----------AC-----EGLSGRSLRKLPFLA--HAALAN 433 (459)
Q Consensus 384 ~~~~~~~~i~~~~-~-~~~~~~~L~~la----------~-----------~~-----~G~Sgr~L~~L~~~a--~a~~~~ 433 (459)
+.....+.+.+.. . .......++.-+ . .. .-.+.|+|..|+.+| +|....
T Consensus 709 AR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rL 788 (915)
T PTZ00111 709 SKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRL 788 (915)
T ss_pred HhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcC
Confidence 5544344333221 1 112222333311 0 01 125789999999998 777788
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 012655 434 PNGCDPSKFLLTVIDTAR 451 (459)
Q Consensus 434 ~~~it~~d~~~Al~~~~~ 451 (459)
...++.+|+.+|++-...
T Consensus 789 s~~Vt~~Dv~~Ai~L~~~ 806 (915)
T PTZ00111 789 STVVTPADALQAVQIVKS 806 (915)
T ss_pred cCcccHHHHHHHHHHHHH
Confidence 999999999999876543
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.04 E-value=7.1e-10 Score=95.19 Aligned_cols=131 Identities=22% Similarity=0.281 Sum_probs=76.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccccc--------------chhhHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF--------------SESGKLVAKLFQKIQ 259 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~--------------~e~~~~v~~~f~~~~ 259 (459)
+..++|+||||||||++++.+++.+.... ..++.+++......+. .........++..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999986532 2346666665432211 122233444444444
Q ss_pred HHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCC-CCcccHHHhccCCeE
Q 012655 260 EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI-TAAIDIAFVDRADIK 338 (459)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~-~~~ld~al~~R~~~~ 338 (459)
. ..+.+++|||++.+......... ................+..+|+++|. ....+..+..|++..
T Consensus 76 ~-----~~~~viiiDei~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 141 (148)
T smart00382 76 K-----LKPDVLILDEITSLLDAEQEALL---------LLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRR 141 (148)
T ss_pred h-----cCCCEEEEECCcccCCHHHHHHH---------HhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccceE
Confidence 3 23689999999988664321100 00000001112223455666666675 344455666788888
Q ss_pred EEeCCC
Q 012655 339 AYVGPP 344 (459)
Q Consensus 339 i~~~~P 344 (459)
+.++.+
T Consensus 142 ~~~~~~ 147 (148)
T smart00382 142 IVLLLI 147 (148)
T ss_pred EEecCC
Confidence 877654
No 177
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.03 E-value=5.3e-11 Score=104.07 Aligned_cols=110 Identities=27% Similarity=0.419 Sum_probs=67.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc------ccccchhhHH--HHHHHHHHHHHHHhccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF------SKWFSESGKL--VAKLFQKIQEMVEEENN 267 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~------~~~~~e~~~~--v~~~f~~~~~~~~~~~~ 267 (459)
.|+|+||||||||++++.+|+.++.++ +.++++... ..|....+.. ....+..+. ..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~---------~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~------~~ 65 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPV---------IRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM------RK 65 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEE---------EEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH------HE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcce---------EEEEeccccccccceeeeeecccccccccccccccc------cc
Confidence 389999999999999999999997665 555555432 1111100000 000000011 15
Q ss_pred chhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-----------CCC------CEEEEEecCCCC----c
Q 012655 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-----------SSP------NVIILTTSNITA----A 326 (459)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-----------~~~------~viIi~Ttn~~~----~ 326 (459)
+.+++|||++.... .++..|+..++.-. ... ++.+|+|+|... .
T Consensus 66 ~~il~lDEin~a~~---------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~ 130 (139)
T PF07728_consen 66 GGILVLDEINRAPP---------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKE 130 (139)
T ss_dssp EEEEEESSCGG--H---------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTT
T ss_pred eeEEEECCcccCCH---------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCc
Confidence 78999999987653 45566666665311 111 489999999998 7
Q ss_pred ccHHHhccC
Q 012655 327 IDIAFVDRA 335 (459)
Q Consensus 327 ld~al~~R~ 335 (459)
+++++++||
T Consensus 131 l~~al~~Rf 139 (139)
T PF07728_consen 131 LSPALLDRF 139 (139)
T ss_dssp TCHHHHTT-
T ss_pred CCHHHHhhC
Confidence 899999997
No 178
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.03 E-value=4e-09 Score=105.71 Aligned_cols=259 Identities=20% Similarity=0.179 Sum_probs=140.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcc-------cccCCCCc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI-------RFSSRYPQ 228 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~-------~~~~~~~~ 228 (459)
..|.-++|++.+|..|.-....+. =.++||-|+.|+||||++|+|+..|.. +|.. -|+
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~--------------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~c-dP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQ--------------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNC-DPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccc--------------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCC-CCC
Confidence 346778999999988765432211 246999999999999999999999842 1110 011
Q ss_pred ceEEEEccc----------c---------ccccccchhhH-HH-----HHHHHHHHHHH----HhcccchhhhhhhhHhH
Q 012655 229 CQLVEVNAH----------S---------LFSKWFSESGK-LV-----AKLFQKIQEMV----EEENNLVFVLIDEVESL 279 (459)
Q Consensus 229 ~~~i~i~~~----------~---------l~~~~~~e~~~-~v-----~~~f~~~~~~~----~~~~~~~illIDEid~l 279 (459)
... -.|. . +.....+.+.. .+ .+....-.+.+ ....+..|+++||+..|
T Consensus 79 ~P~--~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL 156 (423)
T COG1239 79 DPE--EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL 156 (423)
T ss_pred Chh--hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc
Confidence 110 0000 0 00001111111 11 11111000000 01235689999998866
Q ss_pred HHhhhhccCCCCCCchHHHHHHHHHHHHh-----------hcCCCCEEEEEecCCCC-cccHHHhccCCeEEEeCC-CCH
Q 012655 280 AAARKAALSGSEPSDSIRVVNALLTQMDK-----------LKSSPNVIILTTSNITA-AIDIAFVDRADIKAYVGP-PTL 346 (459)
Q Consensus 280 ~~~r~~~ls~~e~~~~~~~~~~ll~~l~~-----------l~~~~~viIi~Ttn~~~-~ld~al~~R~~~~i~~~~-P~~ 346 (459)
.. .+++.||+.+.. +....++++|+|.|+.+ .|-+.|++||+..+.+.. .+.
T Consensus 157 ~d---------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~ 221 (423)
T COG1239 157 DD---------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDL 221 (423)
T ss_pred cH---------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCH
Confidence 54 567777777653 23345799999999874 578999999999998855 556
Q ss_pred HHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHh--hh-hhhHHHHHHHHHHHHcc--CCCh-HHH
Q 012655 347 QARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQE--AD-RSQHFYKQLLEAAEACE--GLSG-RSL 420 (459)
Q Consensus 347 ~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~--~~-~~~~~~~~L~~la~~~~--G~Sg-r~L 420 (459)
++|.+|+++.+.-- . . ...-+..|......+....+.. .. ...-.+..+..+|..|. +..| |.-
T Consensus 222 ~~rv~Ii~r~~~f~-~--------~-Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~rad 291 (423)
T COG1239 222 EERVEIIRRRLAFE-A--------V-PEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRAD 291 (423)
T ss_pred HHHHHHHHHHHHhh-c--------C-cHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchh
Confidence 78889988866531 0 0 0001111211111110000000 00 00001223445555542 2332 222
Q ss_pred hchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHhhc
Q 012655 421 RKLPFLA--HAALANPNGCDPSKFLLTVIDTARKERSE 456 (459)
Q Consensus 421 ~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~~~ 456 (459)
-.+...+ +|...++.+++.+|+.+|...+.......
T Consensus 292 i~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~hR~~~ 329 (423)
T COG1239 292 IVVVRAAKALAALRGRTEVEEEDIREAAELALLHRRRR 329 (423)
T ss_pred hHHHHHHHHHHHhcCceeeehhhHHHHHhhhhhhhhcc
Confidence 2233333 77788999999999999998876665543
No 179
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=1.4e-09 Score=108.80 Aligned_cols=143 Identities=22% Similarity=0.296 Sum_probs=92.9
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccC------CCCcceEEEEcccccccccc------chhhHHHHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSS------RYPQCQLVEVNAHSLFSKWF------SESGKLVAKLFQKIQEMV 262 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~------~~~~~~~i~i~~~~l~~~~~------~e~~~~v~~~f~~~~~~~ 262 (459)
..+||+||+|+|||++|+++|+.+-..-.. ..+.|..+.-..|.-+.... .-.-..++.+...+....
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 459999999999999999999998542100 01111111111111000000 011234555444443321
Q ss_pred HhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeC
Q 012655 263 EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVG 342 (459)
Q Consensus 263 ~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~ 342 (459)
. .....|++||++|.+.. ...|+|++.|++ +.+++++|.+|+.++.+.+.+++|+ ..+.|+
T Consensus 103 ~-~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~~~~ 163 (328)
T PRK05707 103 Q-LGGRKVVLIEPAEAMNR---------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKSRC-QQQACP 163 (328)
T ss_pred c-cCCCeEEEECChhhCCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHhhc-eeeeCC
Confidence 1 23557889999998865 568999999988 4467777777788888999999999 668999
Q ss_pred CCCHHHHHHHHHHH
Q 012655 343 PPTLQARYEILRSC 356 (459)
Q Consensus 343 ~P~~~~r~~Il~~~ 356 (459)
+|+.++..+.+...
T Consensus 164 ~~~~~~~~~~L~~~ 177 (328)
T PRK05707 164 LPSNEESLQWLQQA 177 (328)
T ss_pred CcCHHHHHHHHHHh
Confidence 99998888777654
No 180
>PRK08116 hypothetical protein; Validated
Probab=99.00 E-value=2.3e-09 Score=104.29 Aligned_cols=138 Identities=22% Similarity=0.195 Sum_probs=80.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccch----hhHHHHHHHHHHHHHHHhcccch
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE----SGKLVAKLFQKIQEMVEEENNLV 269 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e----~~~~v~~~f~~~~~~~~~~~~~~ 269 (459)
+.+++|+|++|||||+|+.++++.+... +..++.++..+++...... .......+++. .....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~------~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~-------l~~~d 180 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK------GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRS-------LVNAD 180 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHH-------hcCCC
Confidence 4579999999999999999999998421 2334666666654322111 00011111111 13457
Q ss_pred hhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCc----ccHHHhccC---CeEEEeC
Q 012655 270 FVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA----IDIAFVDRA---DIKAYVG 342 (459)
Q Consensus 270 illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~----ld~al~~R~---~~~i~~~ 342 (459)
+|+|||+... .........|+..++.....+..+|++|...+.. ++..+.+|+ ...+.+.
T Consensus 181 lLviDDlg~e-------------~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~ 247 (268)
T PRK08116 181 LLILDDLGAE-------------RDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENE 247 (268)
T ss_pred EEEEecccCC-------------CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEee
Confidence 9999997431 1123445667777776555555555555444444 366777884 4556666
Q ss_pred CCCHHHHHHHHHHHHHH
Q 012655 343 PPTLQARYEILRSCLQE 359 (459)
Q Consensus 343 ~P~~~~r~~Il~~~l~~ 359 (459)
.++. |..+.+..++.
T Consensus 248 g~d~--R~~~~~ek~~~ 262 (268)
T PRK08116 248 GKSY--RKEIAKEKLQR 262 (268)
T ss_pred CcCh--hHHHHHHHHHH
Confidence 6653 55555555443
No 181
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7.5e-10 Score=112.35 Aligned_cols=240 Identities=22% Similarity=0.224 Sum_probs=134.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
-|.+++|++..|+.+.-.+.. |.+++++||||||||++++.+.+.+..-. ....++++.
T Consensus 177 D~~DV~GQ~~AKrAleiAAAG----------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls-----~~E~lE~s~ 235 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAAG----------------GHNLLLVGPPGTGKTMLASRLPGLLPPLS-----IPEALEVSA 235 (490)
T ss_pred chhhhcCcHHHHHHHHHHHhc----------------CCcEEEecCCCCchHHhhhhhcccCCCCC-----hHHHHHHHH
Confidence 478999999999998776542 56699999999999999999998874211 000111110
Q ss_pred -----cccccc---c----c---chhhHHHHHHHHH---HHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHH
Q 012655 237 -----HSLFSK---W----F---SESGKLVAKLFQK---IQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRV 298 (459)
Q Consensus 237 -----~~l~~~---~----~---~e~~~~v~~~f~~---~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~ 298 (459)
..+... | | ..+. ....+..- .+----...+..|+||||+-.+-. .+
T Consensus 236 I~s~~g~~~~~~~~~~~rPFr~PHHsa-S~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~---------------~i 299 (490)
T COG0606 236 IHSLAGDLHEGCPLKIHRPFRAPHHSA-SLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKR---------------SI 299 (490)
T ss_pred HhhhcccccccCccceeCCccCCCccc-hHHHHhCCCCCCCCCceeeecCCEEEeeccchhhH---------------HH
Confidence 000000 0 0 0000 00000000 000000012457999999755432 45
Q ss_pred HHHHHHHHHhh-----------cCCCCEEEEEecCCCCc-----------------------ccHHHhccCCeEEEeCCC
Q 012655 299 VNALLTQMDKL-----------KSSPNVIILTTSNITAA-----------------------IDIAFVDRADIKAYVGPP 344 (459)
Q Consensus 299 ~~~ll~~l~~l-----------~~~~~viIi~Ttn~~~~-----------------------ld~al~~R~~~~i~~~~P 344 (459)
++.|..-|+.= .-..++.+++++|+.-. +...|++|+|..+.++.+
T Consensus 300 Le~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~ 379 (490)
T COG0606 300 LEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRL 379 (490)
T ss_pred HHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCC
Confidence 55555444321 11235677788885422 356688999999998887
Q ss_pred CHHHH--------------HHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHH
Q 012655 345 TLQAR--------------YEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAE 410 (459)
Q Consensus 345 ~~~~r--------------~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~ 410 (459)
+..++ ..+++..-.+..+.+.+ . ....+....++..+........+.+.|-
T Consensus 380 ~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~-~--------------~Na~l~~~~l~k~~~L~~~~~~~L~~al 444 (490)
T COG0606 380 SAGELIRQVPTGESSAGVRERVAKAREAQIARAGRI-G--------------INAELSEEALRKFCALQREDADLLKAAL 444 (490)
T ss_pred CHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhcc-C--------------cchhcCHHHHHHhcccCHhHHHHHHHHH
Confidence 63332 23333333333222221 0 0112222233333333333445666677
Q ss_pred HccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHH
Q 012655 411 ACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVID 448 (459)
Q Consensus 411 ~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~ 448 (459)
..-++|.|...++...| .|-..+...+...++.+|+..
T Consensus 445 ~~~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 445 ERLGLSARAYHRILKVARTIADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred HhcchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhh
Confidence 77899999999999999 555667888888899988864
No 182
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.99 E-value=3e-08 Score=93.88 Aligned_cols=228 Identities=22% Similarity=0.315 Sum_probs=131.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHh-cccccCC--------CCc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKL-SIRFSSR--------YPQ 228 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l-~~~~~~~--------~~~ 228 (459)
++.+++.++....|..+... ..++ ++++|||+|+||-|.+.++.+++ |...... .+.
T Consensus 12 l~~l~~~~e~~~~Lksl~~~------~d~P--------Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSST------GDFP--------HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred hhhcccHHHHHHHHHHhccc------CCCC--------eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 44566666666666555431 1222 39999999999999999999887 2111000 011
Q ss_pred ceEEEEcc---ccccccccchhhH----HHHHHHHHHHHH--HH--hcccchhhhhhhhHhHHHhhhhccCCCCCCchHH
Q 012655 229 CQLVEVNA---HSLFSKWFSESGK----LVAKLFQKIQEM--VE--EENNLVFVLIDEVESLAAARKAALSGSEPSDSIR 297 (459)
Q Consensus 229 ~~~i~i~~---~~l~~~~~~e~~~----~v~~~f~~~~~~--~~--~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~ 297 (459)
..-++++. .....-..+..|. -+.++....... ++ ......+++|.|+|.|.. +
T Consensus 78 ~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~---------------d 142 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR---------------D 142 (351)
T ss_pred CceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH---------------H
Confidence 11122221 1111111122222 233333322211 00 123457899999999976 4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcc
Q 012655 298 VVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSML 377 (459)
Q Consensus 298 ~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l 377 (459)
.+.+|-..|+... +++-+|..+|....+-+++++|+ ..+.+|.|+.++...++...+++. |
T Consensus 143 AQ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE---~------------- 203 (351)
T KOG2035|consen 143 AQHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKE---G------------- 203 (351)
T ss_pred HHHHHHHHHHHHh--cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHh---c-------------
Confidence 5566777777654 34555566788888999999999 889999999999999998888762 1
Q ss_pred cchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHh-------hcCCCCCCHHHHHHHHHHHH
Q 012655 378 PNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAA-------LANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 378 ~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~-------~~~~~~it~~d~~~Al~~~~ 450 (459)
+.-+ ...+..||+.+.| +||+..-..-+. .+....+..-||..+++...
T Consensus 204 ---------l~lp-----------~~~l~rIa~kS~~----nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 204 ---------LQLP-----------KELLKRIAEKSNR----NLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred ---------ccCc-----------HHHHHHHHHHhcc----cHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHH
Confidence 1111 1236788887776 555532222111 12224555667777777666
Q ss_pred HHHhhcC
Q 012655 451 RKERSEL 457 (459)
Q Consensus 451 ~~~~~~~ 457 (459)
.....++
T Consensus 260 ~~i~~eQ 266 (351)
T KOG2035|consen 260 RVILKEQ 266 (351)
T ss_pred HHHHhcc
Confidence 6555544
No 183
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.99 E-value=1.8e-10 Score=106.24 Aligned_cols=156 Identities=21% Similarity=0.243 Sum_probs=68.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccC-------CCCcce
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS-------RYPQCQ 230 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~-------~~~~~~ 230 (459)
|.+++|++..|+.|.-.+.. +.++||+||||||||++|+.+...+...-.. .+.-++
T Consensus 2 f~dI~GQe~aKrAL~iAAaG----------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG----------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC----------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred hhhhcCcHHHHHHHHHHHcC----------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 56899999999998776642 3569999999999999999999987432110 010000
Q ss_pred ----EEEEccccccccccchhhHHHHHHHHHHHHH---HHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHH
Q 012655 231 ----LVEVNAHSLFSKWFSESGKLVAKLFQKIQEM---VEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (459)
Q Consensus 231 ----~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~---~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (459)
.-.+....+.....+.+ ...++.-.... .-......|||+||+-.+. ..+++.|.
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s---~~~liGgg~~~~PGeislAh~GVLflDE~~ef~---------------~~vld~Lr 127 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSAS---EAALIGGGRPPRPGEISLAHRGVLFLDELNEFD---------------RSVLDALR 127 (206)
T ss_dssp -S---EEEE---EEEE-TT-----HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS----------------HHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcC---HHHHhCCCcCCCcCHHHHhcCCEEEechhhhcC---------------HHHHHHHH
Confidence 00000000000000111 11111100000 0011355799999986553 47788888
Q ss_pred HHHHhh-----------cCCCCEEEEEecCCCCc-----------------------ccHHHhccCCeEEEeCCCCHH
Q 012655 304 TQMDKL-----------KSSPNVIILTTSNITAA-----------------------IDIAFVDRADIKAYVGPPTLQ 347 (459)
Q Consensus 304 ~~l~~l-----------~~~~~viIi~Ttn~~~~-----------------------ld~al~~R~~~~i~~~~P~~~ 347 (459)
.-++.- ....++++++|.|+-.. +...+++|||+.+.++..+.+
T Consensus 128 ~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 128 QPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHHHSBEEEEETTEEEEEB--EEEEEEE-S-----------------------------------------------
T ss_pred HHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 887642 11246889999885321 356678899998888876654
No 184
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.6e-09 Score=106.47 Aligned_cols=139 Identities=27% Similarity=0.395 Sum_probs=93.4
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc-ccccchhh-HHHHHHHHHHHHHHHhcccchhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF-SKWFSESG-KLVAKLFQKIQEMVEEENNLVFVL 272 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~-~~~~~e~~-~~v~~~f~~~~~~~~~~~~~~ill 272 (459)
.+|||.||+|+|||.|++.||+.+++|| ...+|..+. ..|+|+.- .-+.++++.|...++. .+..|||
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPf---------aIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVek-AQqGIVf 296 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPF---------AICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEK-AQQGIVF 296 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCe---------EEecccchhhcccccccHHHHHHHHHHHccCCHHH-HhcCeEE
Confidence 4599999999999999999999999888 778888887 56777753 4456666665544433 3558999
Q ss_pred hhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-----------CCCCEEEEEecCCCCc-------ccHHHhcc
Q 012655 273 IDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-----------SSPNVIILTTSNITAA-------IDIAFVDR 334 (459)
Q Consensus 273 IDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-----------~~~~viIi~Ttn~~~~-------ld~al~~R 334 (459)
|||+|++..+..+ ++..-.-....+++.||+.+++-. ..+..+.|-|+|.... ||..+.+|
T Consensus 297 lDEvDKi~~~~~~-i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR 375 (564)
T KOG0745|consen 297 LDEVDKITKKAES-IHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRR 375 (564)
T ss_pred EehhhhhcccCcc-ccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHh
Confidence 9999999864432 111111223578899999987431 2234666777775543 34444444
Q ss_pred C-CeEEEeCCC
Q 012655 335 A-DIKAYVGPP 344 (459)
Q Consensus 335 ~-~~~i~~~~P 344 (459)
. +..+-|+.|
T Consensus 376 ~~d~slGFg~~ 386 (564)
T KOG0745|consen 376 LDDKSLGFGAP 386 (564)
T ss_pred hcchhcccCCC
Confidence 3 345556666
No 185
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.7e-09 Score=110.98 Aligned_cols=176 Identities=20% Similarity=0.329 Sum_probs=123.0
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccC-CCCcceEEE
Q 012655 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS-RYPQCQLVE 233 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~-~~~~~~~i~ 233 (459)
++..|-+||.++-.+++.+.+.. +..-| -+|.|+||+|||.++..+|+.+-..-.. ...+..++.
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-----R~KNN---------PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-----RTKNN---------PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-----cCCCC---------CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 35567788888777777765542 22333 4889999999999999999988421111 124566777
Q ss_pred Ecccccc--ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 234 VNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 234 i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
++...+. .+|-|+.+..+..+.+.+.. ..+.|+||||++.+.....+ +.+ +....|-|.-.| .
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~-----~~~vILFIDEiHtiVGAG~~-----~G~-a~DAaNiLKPaL----A 296 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEK-----SKNVILFIDEIHTIVGAGAT-----EGG-AMDAANLLKPAL----A 296 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhc-----CCCeEEEEechhhhcCCCcc-----ccc-ccchhhhhHHHH----h
Confidence 7777775 46778888888888887776 24799999999999875422 111 344555544443 2
Q ss_pred CCCEEEEEecCCCCc---c--cHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 312 SPNVIILTTSNITAA---I--DIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 312 ~~~viIi~Ttn~~~~---l--d~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
.+.+-+|++|...+- + |.|+-+|| ..+++..|+.++-..|++-.-..+
T Consensus 297 RGeL~~IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 297 RGELRCIGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred cCCeEEEEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHH
Confidence 366666666654332 2 99999999 778899999999999998876665
No 186
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.98 E-value=4.9e-09 Score=104.60 Aligned_cols=138 Identities=25% Similarity=0.309 Sum_probs=88.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccccCCC---------------CcceEEEEccccccccccchhhHHHHHHHHHHHH
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRY---------------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQE 260 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~---------------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~ 260 (459)
.+||+||||+|||++|.++|+.+........ .+-.+++++.++....- .....++.+-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 4999999999999999999999863221100 12345666665543211 011122222221111
Q ss_pred HHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEE
Q 012655 261 MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAY 340 (459)
Q Consensus 261 ~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~ 340 (459)
. .......+++|||+|.+.. ...|+++..+.. +..++.+|.++|.+..+-+.+++|+ ..+.
T Consensus 104 ~-~~~~~~kviiidead~mt~---------------~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~SRc-~~i~ 164 (325)
T COG0470 104 S-PLEGGYKVVIIDEADKLTE---------------DAANALLKTLEE--PPKNTRFILITNDPSKILPTIRSRC-QRIR 164 (325)
T ss_pred C-CCCCCceEEEeCcHHHHhH---------------HHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhhcc-eeee
Confidence 0 0014568999999999976 457888888776 5567788888888888888999999 7777
Q ss_pred eCCCCHHHHHHHHH
Q 012655 341 VGPPTLQARYEILR 354 (459)
Q Consensus 341 ~~~P~~~~r~~Il~ 354 (459)
|++|+........+
T Consensus 165 f~~~~~~~~i~~~e 178 (325)
T COG0470 165 FKPPSRLEAIAWLE 178 (325)
T ss_pred cCCchHHHHHHHhh
Confidence 87766655444333
No 187
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.91 E-value=6.5e-09 Score=93.56 Aligned_cols=147 Identities=19% Similarity=0.248 Sum_probs=85.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC--------------CCc
Q 012655 163 YESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR--------------YPQ 228 (459)
Q Consensus 163 ~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~--------------~~~ 228 (459)
|++.+.+.|...+.. ..+ +..+||+||+|+||+++|+++|+.+-..-... ..+
T Consensus 1 gq~~~~~~L~~~~~~------~~l-------~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------GRL-------PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC------TC---------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc------CCc-------ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 455666666665543 111 34589999999999999999999883321110 011
Q ss_pred ceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh
Q 012655 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (459)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~ 308 (459)
..+..+....-.. .-....++.+...+.... ......|++||++|.+.. ...|+||+.|+.
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~-~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LEe 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSP-SEGKYKVIIIDEADKLTE---------------EAQNALLKTLEE 128 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS--TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHHS
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHH-hcCCceEEEeehHhhhhH---------------HHHHHHHHHhcC
Confidence 1222232221100 001133343333322111 123567999999998865 678999999988
Q ss_pred hcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCC
Q 012655 309 LKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPP 344 (459)
Q Consensus 309 l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P 344 (459)
+..++++|.+|+.+..+-+.+++|+ ..+.+++.
T Consensus 129 --pp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~l 161 (162)
T PF13177_consen 129 --PPENTYFILITNNPSKILPTIRSRC-QVIRFRPL 161 (162)
T ss_dssp --TTTTEEEEEEES-GGGS-HHHHTTS-EEEEE---
T ss_pred --CCCCEEEEEEECChHHChHHHHhhc-eEEecCCC
Confidence 5567888888888899999999999 77777664
No 188
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=5.7e-09 Score=104.45 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=59.8
Q ss_pred ccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCC
Q 012655 266 NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPT 345 (459)
Q Consensus 266 ~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~ 345 (459)
....|++||++|.+.. ...|+||+.|++ +..++++|.+|+.++.+.+.+++|+ ..+.+++|+
T Consensus 131 ~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~ 192 (342)
T PRK06964 131 GGARVVVLYPAEALNV---------------AAANALLKTLEE--PPPGTVFLLVSARIDRLLPTILSRC-RQFPMTVPA 192 (342)
T ss_pred CCceEEEEechhhcCH---------------HHHHHHHHHhcC--CCcCcEEEEEECChhhCcHHHHhcC-EEEEecCCC
Confidence 3456888999888755 567999999987 6677777777888899999999999 788999999
Q ss_pred HHHHHHHHHH
Q 012655 346 LQARYEILRS 355 (459)
Q Consensus 346 ~~~r~~Il~~ 355 (459)
.++..+.+..
T Consensus 193 ~~~~~~~L~~ 202 (342)
T PRK06964 193 PEAAAAWLAA 202 (342)
T ss_pred HHHHHHHHHH
Confidence 9888887765
No 189
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.89 E-value=1.1e-08 Score=102.15 Aligned_cols=55 Identities=29% Similarity=0.479 Sum_probs=44.4
Q ss_pred hh-hhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 158 WE-SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 158 ~~-~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
|+ +++|.++.+.++.+++..... |... .++.++|+|||||||||||++|++.++.
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~----g~~~----~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ----GLEE----RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh----cCCC----CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45 799999999999998876442 2221 2577999999999999999999999965
No 190
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.87 E-value=4.3e-08 Score=103.14 Aligned_cols=153 Identities=22% Similarity=0.329 Sum_probs=98.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc-cCCCCcceEEEEcccccccc-------ccchhhHHHH--HHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLVEVNAHSLFSK-------WFSESGKLVA--KLFQKIQEMVE 263 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~~i~i~~~~l~~~-------~~~e~~~~v~--~~f~~~~~~~~ 263 (459)
+..++++|-||||||.+++.+...+...- ....|...+++||+-.+.+. |..-++..+. ...+.....+.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 56899999999999999999998774211 11234556689998776542 1111110000 00001111111
Q ss_pred ---hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHh----ccCC
Q 012655 264 ---EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV----DRAD 336 (459)
Q Consensus 264 ---~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~----~R~~ 336 (459)
....++||+|||+|.|.... ..++..|+++-. .++.+++||+-+|..+.....+. +|.|
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~------------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg 567 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRS------------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLG 567 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhccc------------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcc
Confidence 23567899999999998754 345555555522 35678899998887765433333 6665
Q ss_pred -eEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 337 -IKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 337 -~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
..+.|.+.+..+..+|+..+++.+
T Consensus 568 ~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 568 LTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred ceeeecCCCCHHHHHHHHHHhhcch
Confidence 667899999999999999999875
No 191
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.86 E-value=4.5e-09 Score=96.43 Aligned_cols=118 Identities=24% Similarity=0.353 Sum_probs=77.8
Q ss_pred CCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccc-cchhhHHHHHHHHH------
Q 012655 185 GVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW-FSESGKLVAKLFQK------ 257 (459)
Q Consensus 185 g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~-~~e~~~~v~~~f~~------ 257 (459)
|++ +.+..|..+.|+||+|||||||+|++...- .++.+.|.+++..+.... ....++.+..+||.
T Consensus 20 gi~-l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-------~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPH 91 (240)
T COG1126 20 GIS-LSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-------EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPH 91 (240)
T ss_pred Ccc-eeEcCCCEEEEECCCCCCHHHHHHHHHCCc-------CCCCceEEECCEeccchhhHHHHHHhcCeeccccccccc
Confidence 454 677889999999999999999999998876 455666888875443211 11122223333332
Q ss_pred -------------------------HHHHHH----------------------------hcccchhhhhhhhHhHHHhhh
Q 012655 258 -------------------------IQEMVE----------------------------EENNLVFVLIDEVESLAAARK 284 (459)
Q Consensus 258 -------------------------~~~~~~----------------------------~~~~~~illIDEid~l~~~r~ 284 (459)
+.+++. -.-.|.++++||..+
T Consensus 92 lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTS------ 165 (240)
T COG1126 92 LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTS------ 165 (240)
T ss_pred chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcc------
Confidence 111111 012455566665332
Q ss_pred hccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCC
Q 012655 285 AALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT 324 (459)
Q Consensus 285 ~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~ 324 (459)
..++..+..++..|..+...+.++++.||...
T Consensus 166 --------ALDPElv~EVL~vm~~LA~eGmTMivVTHEM~ 197 (240)
T COG1126 166 --------ALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG 197 (240)
T ss_pred --------cCCHHHHHHHHHHHHHHHHcCCeEEEEechhH
Confidence 24478999999999999999999999999753
No 192
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.85 E-value=4.1e-09 Score=89.58 Aligned_cols=108 Identities=28% Similarity=0.389 Sum_probs=57.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc-cc-----ccc-ccchhhHHHHHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH-SL-----FSK-WFSESGKLVAKLFQKIQEMVEEENNL 268 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~-~l-----~~~-~~~e~~~~v~~~f~~~~~~~~~~~~~ 268 (459)
++||.|+||+|||++++++|+.++..|. .|.+. ++ .+. ++...... |.-... .--.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~---------RIq~tpdllPsDi~G~~v~~~~~~~----f~~~~G----Pif~ 63 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFK---------RIQFTPDLLPSDILGFPVYDQETGE----FEFRPG----PIFT 63 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EE---------EEE--TT--HHHHHEEEEEETTTTE----EEEEE-----TT-S
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCcee---------EEEecCCCCcccceeeeeeccCCCe----eEeecC----hhhh
Confidence 4899999999999999999999987763 33332 11 111 11110000 000000 0012
Q ss_pred hhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc---------CCCCEEEEEecCCCC-----cccHHHhcc
Q 012655 269 VFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK---------SSPNVIILTTSNITA-----AIDIAFVDR 334 (459)
Q Consensus 269 ~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~---------~~~~viIi~Ttn~~~-----~ld~al~~R 334 (459)
.++++|||.+..+ +++++++..|.+-+ -...++||+|.|+.+ .++.++++|
T Consensus 64 ~ill~DEiNrapp---------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DR 128 (131)
T PF07726_consen 64 NILLADEINRAPP---------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDR 128 (131)
T ss_dssp SEEEEETGGGS-H---------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTT
T ss_pred ceeeecccccCCH---------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcc
Confidence 5899999987655 66788888887532 124589999999876 468899999
Q ss_pred C
Q 012655 335 A 335 (459)
Q Consensus 335 ~ 335 (459)
|
T Consensus 129 F 129 (131)
T PF07726_consen 129 F 129 (131)
T ss_dssp S
T ss_pred c
Confidence 8
No 193
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.84 E-value=1.5e-07 Score=91.56 Aligned_cols=205 Identities=18% Similarity=0.151 Sum_probs=116.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccc--cc----------chhhHHHHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK--WF----------SESGKLVAKLFQKIQEMV 262 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~--~~----------~e~~~~v~~~f~~~~~~~ 262 (459)
.++||+|++|.|||++++.+...............+++.+....--+. .+ ......+......+..++
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 359999999999999999999987654432223346666665432100 00 001111223333333333
Q ss_pred HhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCC--CEEEEEecCCCCcc--cHHHhccCCeE
Q 012655 263 EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP--NVIILTTSNITAAI--DIAFVDRADIK 338 (459)
Q Consensus 263 ~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~--~viIi~Ttn~~~~l--d~al~~R~~~~ 338 (459)
.. -...+|+|||++.+.... .+-+..++..+..+...- .+|.++|......+ |+.+.+||. .
T Consensus 142 r~-~~vrmLIIDE~H~lLaGs------------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~ 207 (302)
T PF05621_consen 142 RR-LGVRMLIIDEFHNLLAGS------------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFE-P 207 (302)
T ss_pred HH-cCCcEEEeechHHHhccc------------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccC-C
Confidence 32 356799999999976521 233444555555443332 35666665544444 888889994 4
Q ss_pred EEeCCCCH-HHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCCh
Q 012655 339 AYVGPPTL-QARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSG 417 (459)
Q Consensus 339 i~~~~P~~-~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sg 417 (459)
+.+|.-.. ++...++..+-..+.- ..... +. .......|-..|+|..|
T Consensus 208 ~~Lp~W~~d~ef~~LL~s~e~~LPL-------r~~S~-----------------l~-------~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 208 FELPRWELDEEFRRLLASFERALPL-------RKPSN-----------------LA-------SPELARRIHERSEGLIG 256 (302)
T ss_pred ccCCCCCCCcHHHHHHHHHHHhCCC-------CCCCC-----------------CC-------CHHHHHHHHHHcCCchH
Confidence 44555333 3444555554444310 00000 00 01124567788999888
Q ss_pred HHHhchHHHH-HHhhcCCCCCCHHHHHH
Q 012655 418 RSLRKLPFLA-HAALANPNGCDPSKFLL 444 (459)
Q Consensus 418 r~L~~L~~~a-~a~~~~~~~it~~d~~~ 444 (459)
.-.+-|-..| .|...+...||.+.+..
T Consensus 257 ~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 257 ELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 7666666666 77778899999888655
No 194
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=3e-08 Score=98.58 Aligned_cols=143 Identities=23% Similarity=0.338 Sum_probs=93.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhccccc------CCCCcceEEEEcccccccccc---c--hhhHHHHHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRYPQCQLVEVNAHSLFSKWF---S--ESGKLVAKLFQKIQEMVE 263 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~~~~~~i~i~~~~l~~~~~---~--e~~~~v~~~f~~~~~~~~ 263 (459)
..+||+||.|+||+++|+.+|+.+-..-. .....|..+.-..|.-+-... + -.-..++.+.+.+....
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~- 103 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA- 103 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc-
Confidence 45899999999999999999999843210 001111111111111110000 0 11234444444333221
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCC
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGP 343 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~ 343 (459)
..+...|++||++|.+.. ...|+||+.|+. +.+++++|.+|+.++.+-+.+++|+ ..+.+++
T Consensus 104 ~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~ 165 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTE---------------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYSRC-QTWLIHP 165 (325)
T ss_pred ccCCceEEEEechhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHhhc-eEEeCCC
Confidence 123557999999998865 567999999988 5667777778888889999999999 7888999
Q ss_pred CCHHHHHHHHHHH
Q 012655 344 PTLQARYEILRSC 356 (459)
Q Consensus 344 P~~~~r~~Il~~~ 356 (459)
|+.++..+.+...
T Consensus 166 ~~~~~~~~~L~~~ 178 (325)
T PRK06871 166 PEEQQALDWLQAQ 178 (325)
T ss_pred CCHHHHHHHHHHH
Confidence 9988887777653
No 195
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=1.1e-07 Score=102.28 Aligned_cols=180 Identities=13% Similarity=0.160 Sum_probs=98.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEE-c
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV-N 235 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i-~ 235 (459)
.++++++.++..+.+..++.... .+. ..++.++|+|||||||||+++++|+.++..+............ +
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~----~~~-----~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQV----LEN-----APKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcc----ccc-----CCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 37889999888887777765421 111 2257799999999999999999999998654221000000000 0
Q ss_pred c----cccccc--ccchhhHHHHHHHHHHHHHHH-----hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHH
Q 012655 236 A----HSLFSK--WFSESGKLVAKLFQKIQEMVE-----EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (459)
Q Consensus 236 ~----~~l~~~--~~~e~~~~v~~~f~~~~~~~~-----~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (459)
. .++... .+......+..+...+..... ......||+|||++.+.... ...+..++.
T Consensus 153 ~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~------------~~~lq~lLr 220 (637)
T TIGR00602 153 DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD------------TRALHEILR 220 (637)
T ss_pred ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh------------HHHHHHHHH
Confidence 0 000000 011112233333333332110 01355799999998775421 123444444
Q ss_pred -HHHhhcCCCC-EEEEEecCCCC--------------cccHHHhccCC-eEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 305 -QMDKLKSSPN-VIILTTSNITA--------------AIDIAFVDRAD-IKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 305 -~l~~l~~~~~-viIi~Ttn~~~--------------~ld~al~~R~~-~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
... ..+. .+|++++..+. .+.++++++.. .+|.|.+.......+.|+..+...
T Consensus 221 ~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 221 WKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred HHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhh
Confidence 221 1233 33333332221 13367775322 468899999999888888888763
No 196
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.81 E-value=2.7e-08 Score=93.61 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=28.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|||||||.|.+|+...
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6677899999999999999999999999874
No 197
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.80 E-value=2.3e-09 Score=102.31 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhc-CCCCEEEEEecCCCCcc---cHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 296 IRVVNALLTQMDKLK-SSPNVIILTTSNITAAI---DIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 296 ~~~~~~ll~~l~~l~-~~~~viIi~Ttn~~~~l---d~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
..-+-.++..+.++. ..+..+|+++|+...+. |..++-+-+.++..+.|.+.-..+.++..+.-
T Consensus 171 i~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vygv 238 (258)
T COG1120 171 IAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGV 238 (258)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhCC
Confidence 455566777777776 44678888888754433 22223344677888899877777777776653
No 198
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.78 E-value=2e-07 Score=92.57 Aligned_cols=53 Identities=30% Similarity=0.480 Sum_probs=36.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+.++|+.+.++..--.+.- .....+- |+.+||.||||||||.||-++|++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~m---Ik~~K~a------Gr~iLiaGppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM---IKEGKIA------GRAILIAGPPGTGKTALAMAIAKELG 75 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH---HHTT--T------T-EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred cccccChHHHHHHHHHHHHH---Hhccccc------CcEEEEeCCCCCCchHHHHHHHHHhC
Confidence 45788998888775444321 1111111 79999999999999999999999996
No 199
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=2.1e-08 Score=100.54 Aligned_cols=142 Identities=21% Similarity=0.303 Sum_probs=92.2
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccc------cCCCCcceEEEEccccccccccch------hhHHHHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF------SSRYPQCQLVEVNAHSLFSKWFSE------SGKLVAKLFQKIQEMV 262 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~------~~~~~~~~~i~i~~~~l~~~~~~e------~~~~v~~~f~~~~~~~ 262 (459)
..+||+||+|+||+++|+++|+.+-..- ......|..+.-..|.-+.....+ .-..++.+.+.+....
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~ 104 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHA 104 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhcc
Confidence 4699999999999999999999984321 011111111111111111000011 1223444443333211
Q ss_pred HhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeC
Q 012655 263 EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVG 342 (459)
Q Consensus 263 ~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~ 342 (459)
..+...|++||++|.+.. ...|+||+.|++ +.+++++|.+++.++.+-+.+++|+. .+.++
T Consensus 105 -~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~~ 165 (334)
T PRK07993 105 -RLGGAKVVWLPDAALLTD---------------AAANALLKTLEE--PPENTWFFLACREPARLLATLRSRCR-LHYLA 165 (334)
T ss_pred -ccCCceEEEEcchHhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHhccc-cccCC
Confidence 124567999999999865 567999999988 56677777778888999999999995 67899
Q ss_pred CCCHHHHHHHHHH
Q 012655 343 PPTLQARYEILRS 355 (459)
Q Consensus 343 ~P~~~~r~~Il~~ 355 (459)
+|+.++..+.+..
T Consensus 166 ~~~~~~~~~~L~~ 178 (334)
T PRK07993 166 PPPEQYALTWLSR 178 (334)
T ss_pred CCCHHHHHHHHHH
Confidence 9998888777754
No 200
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.77 E-value=5.9e-07 Score=85.76 Aligned_cols=27 Identities=59% Similarity=0.908 Sum_probs=25.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
|+.+||.||||||||.||-+++++++.
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 788999999999999999999999964
No 201
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=2.8e-08 Score=98.64 Aligned_cols=142 Identities=20% Similarity=0.222 Sum_probs=88.2
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCC---CCcceEEEEccc-ccccc--cc---c------hhhHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSR---YPQCQLVEVNAH-SLFSK--WF---S------ESGKLVAKLFQKIQ 259 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~---~~~~~~i~i~~~-~l~~~--~~---~------e~~~~v~~~f~~~~ 259 (459)
..+||+||+|+||+++|.++|+.+-..-... ...|..+.-..| ++.-- .. + -....++.+.+.+.
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~ 106 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLA 106 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHh
Confidence 4599999999999999999999884321000 001111111111 11000 00 0 01123333333332
Q ss_pred HHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEE
Q 012655 260 EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKA 339 (459)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i 339 (459)
... ..+...|++||++|.+.. ...|+||+.|+. +.+++++|.+++.++.+-+.+++|| ..+
T Consensus 107 ~~p-~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i 167 (319)
T PRK08769 107 LTP-QYGIAQVVIVDPADAINR---------------AACNALLKTLEE--PSPGRYLWLISAQPARLPATIRSRC-QRL 167 (319)
T ss_pred hCc-ccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHhhh-eEe
Confidence 211 113457999999998865 567999999988 4456666666777888889999999 788
Q ss_pred EeCCCCHHHHHHHHHH
Q 012655 340 YVGPPTLQARYEILRS 355 (459)
Q Consensus 340 ~~~~P~~~~r~~Il~~ 355 (459)
.+++|+.++..+.+..
T Consensus 168 ~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 168 EFKLPPAHEALAWLLA 183 (319)
T ss_pred eCCCcCHHHHHHHHHH
Confidence 8999998877777654
No 202
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.72 E-value=1.7e-08 Score=100.62 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=36.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (459)
+.|..|..+.|.||+||||||++|+||+.. .|..+.|.+++.++.
T Consensus 26 l~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-------~p~~G~I~l~G~~i~ 70 (352)
T COG3842 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-------QPSSGEILLDGEDIT 70 (352)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhCCC-------CCCCceEEECCEECC
Confidence 556778999999999999999999999987 456666777776553
No 203
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.72 E-value=2.2e-07 Score=99.52 Aligned_cols=166 Identities=19% Similarity=0.248 Sum_probs=103.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
+.++.++|....-+++.+.+.... .. +..|+|+|++|||||++|++|..... ..+..++.++
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a---~~---------~~pvli~Ge~GtGK~~lA~~ih~~s~------r~~~pfv~i~ 254 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA---RS---------NSTVLLRGESGTGKELIAKAIHYLSP------RAKRPFVKVN 254 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh---Cc---------CCCEEEECCCCccHHHHHHHHHHhCC------CCCCCeEEee
Confidence 457788898887777777665422 22 23499999999999999999998763 2345679999
Q ss_pred cccccccccchhhHHHHHHHHHHHH-----------HHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHH
Q 012655 236 AHSLFSKWFSESGKLVAKLFQKIQE-----------MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (459)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~-----------~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (459)
|..+...+. -..+|...+. .+. ......||||||+.+.. ..+..|+.
T Consensus 255 c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~-~a~~GtL~ldei~~L~~---------------~~Q~~Ll~ 312 (534)
T TIGR01817 255 CAALSETLL------ESELFGHEKGAFTGAIAQRKGRFE-LADGGTLFLDEIGEISP---------------AFQAKLLR 312 (534)
T ss_pred cCCCCHHHH------HHHHcCCCCCccCCCCcCCCCccc-ccCCCeEEEechhhCCH---------------HHHHHHHH
Confidence 987633211 1122221100 011 12457899999998865 44566777
Q ss_pred HHHhhc--C-------CCCEEEEEecCCC-------CcccHHHhccCC-eEEEeCCCC--HHHHHHHHHHHHHHHH
Q 012655 305 QMDKLK--S-------SPNVIILTTSNIT-------AAIDIAFVDRAD-IKAYVGPPT--LQARYEILRSCLQELI 361 (459)
Q Consensus 305 ~l~~l~--~-------~~~viIi~Ttn~~-------~~ld~al~~R~~-~~i~~~~P~--~~~r~~Il~~~l~~~~ 361 (459)
.++.-. + ..++.+|+||+.. ..+...|..|+. ..+.+|+.. .++...++..++.+..
T Consensus 313 ~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~ 388 (534)
T TIGR01817 313 VLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFN 388 (534)
T ss_pred HHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHH
Confidence 665421 1 1236677777653 124555666763 467777766 3566778888887753
No 204
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.71 E-value=1e-08 Score=102.85 Aligned_cols=262 Identities=18% Similarity=0.216 Sum_probs=133.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCC---CCcceE-EEEc
Q 012655 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR---YPQCQL-VEVN 235 (459)
Q Consensus 160 ~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~---~~~~~~-i~i~ 235 (459)
++.|.+.+|..++-.+........ -+......+-++||+|.||+|||.|++.+++......+.. ....++ ..+.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~--~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKND--PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVS 102 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCC--CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEEC
T ss_pred cCcCcHHHHHHHHHHHHhcccccc--ccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceec
Confidence 467788888876544322111000 0001122345699999999999999998876654322100 011111 1111
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh----cC
Q 012655 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL----KS 311 (459)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l----~~ 311 (459)
-....+.|.-+.+..+. ....|++|||+|.+.. .....|+..|+.- .+
T Consensus 103 ~d~~~~~~~leaGalvl-------------ad~GiccIDe~dk~~~---------------~~~~~l~eaMEqq~isi~k 154 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVL-------------ADGGICCIDEFDKMKE---------------DDRDALHEAMEQQTISIAK 154 (331)
T ss_dssp CCGGTSSECEEE-HHHH-------------CTTSEEEECTTTT--C---------------HHHHHHHHHHHCSCEEECT
T ss_pred cccccceeEEeCCchhc-------------ccCceeeecccccccc---------------hHHHHHHHHHHcCeeccch
Confidence 12223344444443321 2558999999998855 2245566666642 22
Q ss_pred -------CCCEEEEEecCCCC-------------cccHHHhccCCeEEEe-CCCCHHHHHHHHHHHHHHHHHhc-----c
Q 012655 312 -------SPNVIILTTSNITA-------------AIDIAFVDRADIKAYV-GPPTLQARYEILRSCLQELIRTG-----I 365 (459)
Q Consensus 312 -------~~~viIi~Ttn~~~-------------~ld~al~~R~~~~i~~-~~P~~~~r~~Il~~~l~~~~~~~-----~ 365 (459)
+.+.-|++++|+.. .++..+++|||.++.+ +.++.+.-..+.++.+....... .
T Consensus 155 agi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~ 234 (331)
T PF00493_consen 155 AGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKK 234 (331)
T ss_dssp SSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S------
T ss_pred hhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecccccccccccc
Confidence 23577999999776 2567888999998765 77887777777777766543221 0
Q ss_pred ccC-CccccCCcccchHHHhhcCCchhHHhhhh--hhHHHHHHHHHH---HHccCCChHHHhchHHHH--HHhhcCCCCC
Q 012655 366 ISN-FQDCDQSMLPNFSILKEKLSNPDIQEADR--SQHFYKQLLEAA---EACEGLSGRSLRKLPFLA--HAALANPNGC 437 (459)
Q Consensus 366 ~~~-~~~~~~~~l~~~~~~~~~~~~~~i~~~~~--~~~~~~~L~~la---~~~~G~Sgr~L~~L~~~a--~a~~~~~~~i 437 (459)
... ....+...+..|..+......+.+.+... .......++... ......+.|.|..|+.+| +|....+..+
T Consensus 235 ~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V 314 (331)
T PF00493_consen 235 IKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEV 314 (331)
T ss_dssp --SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSEC
T ss_pred ccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCce
Confidence 000 01223334556666655333444433211 111111222222 122456889999998888 7778889999
Q ss_pred CHHHHHHHHHHHHH
Q 012655 438 DPSKFLLTVIDTAR 451 (459)
Q Consensus 438 t~~d~~~Al~~~~~ 451 (459)
+.+|+..|+.-+..
T Consensus 315 ~~~Dv~~Ai~L~~~ 328 (331)
T PF00493_consen 315 TEEDVEEAIRLFEE 328 (331)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHh
Confidence 99999999976554
No 205
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.71 E-value=7.8e-08 Score=97.28 Aligned_cols=172 Identities=18% Similarity=0.178 Sum_probs=109.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
..++++||....-+++++.++. ++..| ..||++|++||||+.+|+.|...... .+...+|.+|
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~---~ap~~---------~~vLi~GetGtGKel~A~~iH~~s~r-----~~~~PFI~~N 137 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA---YAPSG---------LPVLIIGETGTGKELFARLIHALSAR-----RAEAPFIAFN 137 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh---hCCCC---------CcEEEecCCCccHHHHHHHHHHhhhc-----ccCCCEEEEE
Confidence 3578999998888888887765 45444 44999999999999999999944332 2577889999
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHH----------hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH
Q 012655 236 AHSLFSKWFSESGKLVAKLFQKIQEMVE----------EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (459)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~----------~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (459)
|..+..... ...+|...+..+- +......||+|||..+.. ..+..++..
T Consensus 138 Ca~~~en~~------~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~---------------~~Q~kLl~~ 196 (403)
T COG1221 138 CAAYSENLQ------EAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP---------------EGQEKLLRV 196 (403)
T ss_pred HHHhCcCHH------HHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH---------------hHHHHHHHH
Confidence 987643211 1113332221111 113457899999998865 445677777
Q ss_pred HHhhc---------CCCCEEEEEecCCC--CcccH--HHhc-cCCeEEEeCCCCH--HHHHHHHHHHHHHHHHhcc
Q 012655 306 MDKLK---------SSPNVIILTTSNIT--AAIDI--AFVD-RADIKAYVGPPTL--QARYEILRSCLQELIRTGI 365 (459)
Q Consensus 306 l~~l~---------~~~~viIi~Ttn~~--~~ld~--al~~-R~~~~i~~~~P~~--~~r~~Il~~~l~~~~~~~~ 365 (459)
|+.-. ....+.++++|+.. +.+-. .|.+ |+...|.+|+..+ .++..+++++++...+...
T Consensus 197 le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~ 272 (403)
T COG1221 197 LEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLG 272 (403)
T ss_pred HHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcC
Confidence 77521 12346666666532 22222 3444 6667777777665 3556677788877655443
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.69 E-value=5.5e-08 Score=91.34 Aligned_cols=61 Identities=18% Similarity=0.289 Sum_probs=46.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~ 256 (459)
+.|..|..+.|.||+||||||++|.|-+.+ .|..+.|.+++.++.+.-.-+-++.++++.+
T Consensus 22 l~I~~gef~vliGpSGsGKTTtLkMINrLi-------ept~G~I~i~g~~i~~~d~~~LRr~IGYviQ 82 (309)
T COG1125 22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLI-------EPTSGEILIDGEDISDLDPVELRRKIGYVIQ 82 (309)
T ss_pred EEecCCeEEEEECCCCCcHHHHHHHHhccc-------CCCCceEEECCeecccCCHHHHHHhhhhhhh
Confidence 567789999999999999999999999887 5667778888887765433344445555555
No 207
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=8.6e-08 Score=95.12 Aligned_cols=142 Identities=19% Similarity=0.277 Sum_probs=91.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhccccc-----CCCCcceEEEEcccccccccc-c-----hhhHHHHHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFS-----SRYPQCQLVEVNAHSLFSKWF-S-----ESGKLVAKLFQKIQEMVE 263 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~-----~~~~~~~~i~i~~~~l~~~~~-~-----e~~~~v~~~f~~~~~~~~ 263 (459)
..+||+||.|+||+++|+.+|+.+-..-. .....|..+.-..|.-+-... . -....++.+-+.+....
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~- 104 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS- 104 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCc-
Confidence 46999999999999999999998843210 001111111111111110000 0 01123444333322211
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCC
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGP 343 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~ 343 (459)
..+...|++||++|.+.. ...|+||+.+++ +..++++|.+|+.++.+-+.+++|+ ..+.+++
T Consensus 105 ~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~ 166 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNE---------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVTP 166 (319)
T ss_pred ccCCceEEEecchhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHhcc-eeEeCCC
Confidence 123457999999998865 567999999988 5567777777777888888999999 7888999
Q ss_pred CCHHHHHHHHHH
Q 012655 344 PTLQARYEILRS 355 (459)
Q Consensus 344 P~~~~r~~Il~~ 355 (459)
|+.++..+.+..
T Consensus 167 ~~~~~~~~~L~~ 178 (319)
T PRK06090 167 PSTAQAMQWLKG 178 (319)
T ss_pred CCHHHHHHHHHH
Confidence 999888877754
No 208
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.68 E-value=1e-07 Score=102.20 Aligned_cols=260 Identities=19% Similarity=0.237 Sum_probs=143.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcc-----ccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCC---Ccc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFL-----VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY---PQC 229 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~-----i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~---~~~ 229 (459)
.-++.|.+.+|+.+.-.+ |+ |+.... +...-+|||.|.||+|||.|.+.+++.+....+.-. +..
T Consensus 285 aPsIyG~e~VKkAilLqL-----fg--Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~ 357 (682)
T COG1241 285 APSIYGHEDVKKAILLQL-----FG--GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAA 357 (682)
T ss_pred cccccCcHHHHHHHHHHh-----cC--CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccccc
Confidence 345667777777765443 22 221111 111246999999999999999999998854331110 111
Q ss_pred eEEE-EccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh
Q 012655 230 QLVE-VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (459)
Q Consensus 230 ~~i~-i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~ 308 (459)
++-. +.-....+.|.-+.|..+. ...+|..|||+|.+... -.+++...|++
T Consensus 358 GLTAav~rd~~tge~~LeaGALVl-------------AD~Gv~cIDEfdKm~~~---------------dr~aihEaMEQ 409 (682)
T COG1241 358 GLTAAVVRDKVTGEWVLEAGALVL-------------ADGGVCCIDEFDKMNEE---------------DRVAIHEAMEQ 409 (682)
T ss_pred CceeEEEEccCCCeEEEeCCEEEE-------------ecCCEEEEEeccCCChH---------------HHHHHHHHHHh
Confidence 1110 0001112234434432221 25578999999977542 23444444443
Q ss_pred h----cCC-------CCEEEEEecCCCCc-------------ccHHHhccCCeEEEe-CCCCHHHHHHHHHHHHHHHHHh
Q 012655 309 L----KSS-------PNVIILTTSNITAA-------------IDIAFVDRADIKAYV-GPPTLQARYEILRSCLQELIRT 363 (459)
Q Consensus 309 l----~~~-------~~viIi~Ttn~~~~-------------ld~al~~R~~~~i~~-~~P~~~~r~~Il~~~l~~~~~~ 363 (459)
- .+. .++-|+++.|+... +++.|++|||.++.+ +.|+++.-..+..+.+......
T Consensus 410 QtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~ 489 (682)
T COG1241 410 QTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGE 489 (682)
T ss_pred cEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcc
Confidence 2 121 24557777887653 578899999988866 6788877777777777655210
Q ss_pred c--c------ccCCccccCCcccchHHHhhcCCchhHHhhh--hhhHHHHHHHHHH-----HHccCCChHHHhchHHHH-
Q 012655 364 G--I------ISNFQDCDQSMLPNFSILKEKLSNPDIQEAD--RSQHFYKQLLEAA-----EACEGLSGRSLRKLPFLA- 427 (459)
Q Consensus 364 ~--~------~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~~~L~~la-----~~~~G~Sgr~L~~L~~~a- 427 (459)
. . +......+...+..|..++.....+.+.+.. ........+++-. ..+...+.|+|..++.++
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLae 569 (682)
T COG1241 490 EPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAE 569 (682)
T ss_pred ccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHH
Confidence 0 0 0000000111134455554443334443321 1112222232221 123346899999999888
Q ss_pred -HHhhcCCCCCCHHHHHHHHHHHHHH
Q 012655 428 -HAALANPNGCDPSKFLLTVIDTARK 452 (459)
Q Consensus 428 -~a~~~~~~~it~~d~~~Al~~~~~~ 452 (459)
+|.+.....++.+|+.+|++-....
T Consensus 570 A~Ak~rLS~~V~~eD~~eAi~lv~~~ 595 (682)
T COG1241 570 AHAKMRLSDVVEEEDVDEAIRLVDFS 595 (682)
T ss_pred HHHhhhccCCCCHHHHHHHHHHHHHH
Confidence 7778889999999999998766533
No 209
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.68 E-value=6.8e-08 Score=96.81 Aligned_cols=164 Identities=19% Similarity=0.171 Sum_probs=100.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.+++++|....-+.+.+.+... ...+ ..|+|+|++||||+++|+++..... .....++.++|
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~---a~~~---------~pVlI~GE~GtGK~~lA~~iH~~s~------r~~~pfv~v~c 65 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL---APLD---------KPVLIIGERGTGKELIASRLHYLSS------RWQGPFISLNC 65 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH---hCCC---------CCEEEECCCCCcHHHHHHHHHHhCC------ccCCCeEEEeC
Confidence 3567888877777777666542 2222 3399999999999999999986543 23456799999
Q ss_pred ccccccccchhhHHHHHHHHHHH-----------HHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQ-----------EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~-----------~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (459)
..+.... .-..+|.... ..+. ......|||||++.+.. ..+..|+..
T Consensus 66 ~~~~~~~------~~~~lfg~~~~~~~g~~~~~~g~l~-~a~gGtL~l~~i~~L~~---------------~~Q~~L~~~ 123 (326)
T PRK11608 66 AALNENL------LDSELFGHEAGAFTGAQKRHPGRFE-RADGGTLFLDELATAPM---------------LVQEKLLRV 123 (326)
T ss_pred CCCCHHH------HHHHHccccccccCCcccccCCchh-ccCCCeEEeCChhhCCH---------------HHHHHHHHH
Confidence 8763210 0111221110 0111 13457899999998865 445666666
Q ss_pred HHhhc--C-------CCCEEEEEecCCC-------CcccHHHhccC-CeEEEeCCCCH--HHHHHHHHHHHHHH
Q 012655 306 MDKLK--S-------SPNVIILTTSNIT-------AAIDIAFVDRA-DIKAYVGPPTL--QARYEILRSCLQEL 360 (459)
Q Consensus 306 l~~l~--~-------~~~viIi~Ttn~~-------~~ld~al~~R~-~~~i~~~~P~~--~~r~~Il~~~l~~~ 360 (459)
++.-. + ..++.||+|++.. ..+...+..|+ ...+.+|+... ++...++.+++.+.
T Consensus 124 l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~ 197 (326)
T PRK11608 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQM 197 (326)
T ss_pred HhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHH
Confidence 65321 1 1246777777653 23556777888 45667776654 34566777777665
No 210
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.67 E-value=9e-08 Score=100.29 Aligned_cols=233 Identities=19% Similarity=0.214 Sum_probs=122.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcc---eE-EEEccccccccccchhhHHHHHHHHHHHHHHHhcccchh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQC---QL-VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVF 270 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~---~~-i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~i 270 (459)
-+|||+|.||||||.+++.+++.+....+.-..++ ++ .++.-..-...++-+++..+- ....+
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVL-------------SD~Gi 529 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVL-------------SDNGI 529 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEE-------------cCCce
Confidence 45999999999999999999998854321110010 00 011111111222223322110 23467
Q ss_pred hhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHH-hhc-------CCCCEEEEEecCCCCc-------------ccH
Q 012655 271 VLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD-KLK-------SSPNVIILTTSNITAA-------------IDI 329 (459)
Q Consensus 271 llIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~-~l~-------~~~~viIi~Ttn~~~~-------------ld~ 329 (459)
-.|||+|++.... ..++.+.+.+-. .+. -+.+.-|+++.|+... +.+
T Consensus 530 CCIDEFDKM~dSt------------rSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~Lpp 597 (804)
T KOG0478|consen 530 CCIDEFDKMSDST------------RSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPP 597 (804)
T ss_pred EEchhhhhhhHHH------------HHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCCh
Confidence 7899999995533 223333332210 111 1345678888885433 588
Q ss_pred HHhccCCeEEE-eCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHh-hhhh-hHHHHHHH
Q 012655 330 AFVDRADIKAY-VGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQE-ADRS-QHFYKQLL 406 (459)
Q Consensus 330 al~~R~~~~i~-~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~-~~~~-~~~~~~L~ 406 (459)
.+++|||.++- ++.|++..-+.|-.+...-....+.-+.....+...+..+..++.+...+.+.+ +... ......+.
T Consensus 598 tLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~r 677 (804)
T KOG0478|consen 598 TLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMR 677 (804)
T ss_pred hhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhh
Confidence 99999998774 588888766666666555443333111110111111233444433322222211 1111 11111222
Q ss_pred HHHHHccC---CChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHH
Q 012655 407 EAAEACEG---LSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKE 453 (459)
Q Consensus 407 ~la~~~~G---~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~ 453 (459)
.+... .| -..|.+..|..++ ||.......+...|+.+|+.-.....
T Consensus 678 k~~~~-~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~aL 728 (804)
T KOG0478|consen 678 KIGEG-AGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREAL 728 (804)
T ss_pred hhccc-ccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHh
Confidence 22211 22 2568888888777 77778888888899999886655443
No 211
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.66 E-value=1.3e-07 Score=86.25 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=66.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc--ccccchhhHHHHHHHHHHHHHHHhcc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEEN 266 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~ 266 (459)
+.+..|..+.|.||+|+|||||++.+++.+. +..+.+.+++..+. .....-+ ...++...-++.++ .
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-------p~~G~i~~~g~~i~~~~q~~~LS-gGq~qrv~laral~---~ 88 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-------PNGDNDEWDGITPVYKPQYIDLS-GGELQRVAIAAALL---R 88 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCC-------CCCcEEEECCEEEEEEcccCCCC-HHHHHHHHHHHHHh---c
Confidence 4556689999999999999999999999873 34455666654321 1111011 11122222333332 3
Q ss_pred cchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCC-CEEEEEecCCC
Q 012655 267 NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP-NVIILTTSNIT 324 (459)
Q Consensus 267 ~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~-~viIi~Ttn~~ 324 (459)
.|.++++||-.. ..+......+...+..+...+ ..+|++||+..
T Consensus 89 ~p~lllLDEPts--------------~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 89 NATFYLFDEPSA--------------YLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred CCCEEEEECCcc--------------cCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 789999999432 122344455666665554444 68888888753
No 212
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.65 E-value=2e-07 Score=93.44 Aligned_cols=139 Identities=19% Similarity=0.190 Sum_probs=86.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHH-----------HHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ-----------EMVE 263 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~-----------~~~~ 263 (459)
..|||+|++||||+++|++|..... ..+..++.+||..+...+. -..+|.... ..+.
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~------r~~~pfv~vnc~~~~~~~l------~~~lfG~~~g~~~ga~~~~~G~~~ 90 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSK------RWQGPLVKLNCAALSENLL------DSELFGHEAGAFTGAQKRHQGRFE 90 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcC------ccCCCeEEEeCCCCChHHH------HHHHhccccccccCcccccCCchh
Confidence 3399999999999999999987653 2345679999987632211 112222110 0111
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc---------CCCCEEEEEecCCC-------Ccc
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK---------SSPNVIILTTSNIT-------AAI 327 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~---------~~~~viIi~Ttn~~-------~~l 327 (459)
......||||||+.|.. ..+..|+..++.-. ...++.||++|+.. ..+
T Consensus 91 -~a~gGtL~Ldei~~L~~---------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~f 154 (329)
T TIGR02974 91 -RADGGTLFLDELATASL---------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRF 154 (329)
T ss_pred -hCCCCEEEeCChHhCCH---------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCch
Confidence 12457899999998865 44566666665321 12346777777754 234
Q ss_pred cHHHhccCC-eEEEeCCCCH--HHHHHHHHHHHHHHH
Q 012655 328 DIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELI 361 (459)
Q Consensus 328 d~al~~R~~-~~i~~~~P~~--~~r~~Il~~~l~~~~ 361 (459)
...+..|+. ..+.+|+..+ ++...++..++.+..
T Consensus 155 r~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~ 191 (329)
T TIGR02974 155 RADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMA 191 (329)
T ss_pred HHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHH
Confidence 566778873 4566666552 455666777776653
No 213
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.65 E-value=1.6e-07 Score=87.95 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=75.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc-------------c--------ccccchh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL-------------F--------SKWFSES 247 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l-------------~--------~~~~~e~ 247 (459)
|.+..|..+-|.|+||+|||||+|.||+.+ .|..+-+.+++.-- . ....|-+
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-------~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~ 120 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIY-------KPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLT 120 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCcc-------CCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCcc
Confidence 778889999999999999999999999988 45666676665321 0 1112223
Q ss_pred hHHHHHHHHHHHHHHH-------------------------hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHH
Q 012655 248 GKLVAKLFQKIQEMVE-------------------------EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL 302 (459)
Q Consensus 248 ~~~v~~~f~~~~~~~~-------------------------~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~l 302 (459)
.+.+...++.+.++.+ ....|.|++|||+=.... ......-
T Consensus 121 ~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD--------------~~F~~K~ 186 (249)
T COG1134 121 RKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGD--------------AAFQEKC 186 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCC--------------HHHHHHH
Confidence 3344444444333322 234688999999754432 3555556
Q ss_pred HHHHHhhcCCCCEEEEEecCC
Q 012655 303 LTQMDKLKSSPNVIILTTSNI 323 (459)
Q Consensus 303 l~~l~~l~~~~~viIi~Ttn~ 323 (459)
+..+..+..++.++|+++|+.
T Consensus 187 ~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 187 LERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred HHHHHHHHHcCCEEEEEECCH
Confidence 666666655668999999874
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.64 E-value=9.8e-08 Score=91.35 Aligned_cols=72 Identities=24% Similarity=0.389 Sum_probs=43.7
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccch---hhHHHHHHHHHHHHHHHhcccchhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE---SGKLVAKLFQKIQEMVEEENNLVFV 271 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e---~~~~v~~~f~~~~~~~~~~~~~~il 271 (459)
.+++|+|++|||||+|+.+++..+... +..++.+...++....... .......+++. .....+|
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~------g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~-------l~~~dlL 166 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR------GKSVLIITVADIMSAMKDTFSNSETSEEQLLND-------LSNVDLL 166 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc------CCeEEEEEHHHHHHHHHHHHhhccccHHHHHHH-------hccCCEE
Confidence 469999999999999999999998431 2334555555554322111 00011122222 2356899
Q ss_pred hhhhhHhH
Q 012655 272 LIDEVESL 279 (459)
Q Consensus 272 lIDEid~l 279 (459)
+|||++..
T Consensus 167 vIDDig~~ 174 (244)
T PRK07952 167 VIDEIGVQ 174 (244)
T ss_pred EEeCCCCC
Confidence 99998654
No 215
>PF05729 NACHT: NACHT domain
Probab=98.63 E-value=2.6e-07 Score=82.33 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=76.7
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccc-hhhHHHHHHHH-------HHHHHHHhcc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFS-ESGKLVAKLFQ-------KIQEMVEEEN 266 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~-e~~~~v~~~f~-------~~~~~~~~~~ 266 (459)
|.++|+|++|+|||++++.++..+...........-.+.+...+....-.. .....+...+. ..........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 458999999999999999999988543211000012233333332211000 00001110000 1111112234
Q ss_pred cchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccC--CeEEEeCCC
Q 012655 267 NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRA--DIKAYVGPP 344 (459)
Q Consensus 267 ~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~--~~~i~~~~P 344 (459)
...+++||.+|.+...... .........+...+.. ....++-++.|+.... ... +..++ ...+.+.+.
T Consensus 81 ~~~llilDglDE~~~~~~~-------~~~~~~~~~l~~l~~~-~~~~~~~liit~r~~~-~~~-~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-------QERQRLLDLLSQLLPQ-ALPPGVKLIITSRPRA-FPD-LRRRLKQAQILELEPF 150 (166)
T ss_pred CceEEEEechHhcccchhh-------hHHHHHHHHHHHHhhh-ccCCCCeEEEEEcCCh-HHH-HHHhcCCCcEEEECCC
Confidence 5678999999988763211 1112222233333333 1123333444433222 211 22222 157889999
Q ss_pred CHHHHHHHHHHHHHH
Q 012655 345 TLQARYEILRSCLQE 359 (459)
Q Consensus 345 ~~~~r~~Il~~~l~~ 359 (459)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988764
No 216
>PRK12377 putative replication protein; Provisional
Probab=98.63 E-value=8.6e-08 Score=91.96 Aligned_cols=103 Identities=19% Similarity=0.297 Sum_probs=56.9
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchh--hHHHHHHHHHHHHHHHhcccchhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSES--GKLVAKLFQKIQEMVEEENNLVFVL 272 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~--~~~v~~~f~~~~~~~~~~~~~~ill 272 (459)
.+++|+||||||||+||.++++.+... +..++.+...++.......- ...... .+.......+|+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~------g~~v~~i~~~~l~~~l~~~~~~~~~~~~-------~l~~l~~~dLLi 168 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK------GRSVIVVTVPDVMSRLHESYDNGQSGEK-------FLQELCKVDLLV 168 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc------CCCeEEEEHHHHHHHHHHHHhccchHHH-------HHHHhcCCCEEE
Confidence 469999999999999999999998532 12235555555443221100 000111 112224668999
Q ss_pred hhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCC
Q 012655 273 IDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT 324 (459)
Q Consensus 273 IDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~ 324 (459)
|||+..... .......|...++.-..+..-+ |.|||..
T Consensus 169 IDDlg~~~~-------------s~~~~~~l~~ii~~R~~~~~pt-iitSNl~ 206 (248)
T PRK12377 169 LDEIGIQRE-------------TKNEQVVLNQIIDRRTASMRSV-GMLTNLN 206 (248)
T ss_pred EcCCCCCCC-------------CHHHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence 999854321 1223445666666543333334 4456754
No 217
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.62 E-value=1.8e-07 Score=84.27 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=67.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccc-----------ccchhhHHHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK-----------WFSESGKLVAKLFQK 257 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~-----------~~~e~~~~v~~~f~~ 257 (459)
+.+..|..+.|.||+|+|||||++.+++... +..+.+.+++..+... +...-.....+...-
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-------~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~l 93 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYK-------PDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEI 93 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHH
Confidence 5667799999999999999999999999873 3445566666443210 000000011122222
Q ss_pred HHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCC
Q 012655 258 IQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT 324 (459)
Q Consensus 258 ~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~ 324 (459)
++.++ ..|.++++||-.. ..+......+...+..+...+..+|++||+..
T Consensus 94 aral~---~~p~illlDEP~~--------------~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 94 ARALA---RNARLLILDEPTA--------------ALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHHHh---cCCCEEEEECCCc--------------CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 22222 4789999999432 12234445566666655545678888888743
No 218
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.62 E-value=1.4e-07 Score=100.96 Aligned_cols=210 Identities=16% Similarity=0.106 Sum_probs=123.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcc--cccCCCCcceEEEEccccccccccchhhHHHHHHHHHHH-----HHHHhccc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSI--RFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ-----EMVEEENN 267 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~--~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~-----~~~~~~~~ 267 (459)
.+|+|-|+.|+|||+++++++..+.. +| +.+..+.-....+|.. .+......-. ..+ ....
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~---------r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGll-a~Ah 93 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPL---------RRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLL-AEAD 93 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCc---------ccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCce-eecc
Confidence 56999999999999999999999854 44 2221111111111110 0111000000 000 1134
Q ss_pred chhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh-----------cCCCCEEEEEecCCC---CcccHHHhc
Q 012655 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL-----------KSSPNVIILTTSNIT---AAIDIAFVD 333 (459)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l-----------~~~~~viIi~Ttn~~---~~ld~al~~ 333 (459)
..|||+||+..+.. .+++.|+..|+.= ....++++|+|-|.. ..+..++++
T Consensus 94 ~GvL~lDe~n~~~~---------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD 158 (584)
T PRK13406 94 GGVLVLAMAERLEP---------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD 158 (584)
T ss_pred CCEEEecCcccCCH---------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh
Confidence 57999999886644 6778888887631 123468888885433 347899999
Q ss_pred cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHcc
Q 012655 334 RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACE 413 (459)
Q Consensus 334 R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~ 413 (459)
||+..+.++.++..+..+.. .....+....+.+....+.+. .-..+..++.. -
T Consensus 159 Rf~l~v~v~~~~~~~~~~~~---------------------~~~~~I~~AR~rl~~v~v~~~-----~l~~i~~~~~~-~ 211 (584)
T PRK13406 159 RLAFHLDLDGLALRDAREIP---------------------IDADDIAAARARLPAVGPPPE-----AIAALCAAAAA-L 211 (584)
T ss_pred heEEEEEcCCCChHHhcccC---------------------CCHHHHHHHHHHHccCCCCHH-----HHHHHHHHHHH-h
Confidence 99999999998876432100 000011111111110111110 01112233332 4
Q ss_pred CC-ChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 012655 414 GL-SGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKERSELP 458 (459)
Q Consensus 414 G~-Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~~~~~ 458 (459)
|. |.|..-.+...| +|...++..++.+|+.+|+..+..+.....|
T Consensus 212 gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~hR~~~~p 259 (584)
T PRK13406 212 GIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLAPRATRLP 259 (584)
T ss_pred CCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhccCCC
Confidence 65 889988888888 7777899999999999999998887764433
No 219
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=9.3e-08 Score=95.51 Aligned_cols=143 Identities=20% Similarity=0.256 Sum_probs=86.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccccc-------CCCCcc---------eEEEEccccc---cccc-cchhhHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFS-------SRYPQC---------QLVEVNAHSL---FSKW-FSESGKLVAK 253 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~-------~~~~~~---------~~i~i~~~~l---~~~~-~~e~~~~v~~ 253 (459)
+..+||+||+|+|||++|+.+|+.+-..-. ...+.| .++++....- .++. ..-.-..++.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 356999999999999999999999843110 001111 1222322110 0000 0011234455
Q ss_pred HHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhc
Q 012655 254 LFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVD 333 (459)
Q Consensus 254 ~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~ 333 (459)
+.+.+.... ......|++||+++.+.. ...+.+++.++... .+.++|++||+ ++.+.+.+.+
T Consensus 101 l~~~~~~~p-~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~-~~~~~Ilvth~-~~~ll~ti~S 162 (325)
T PRK08699 101 IIDNVYLTS-VRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPP-PQVVFLLVSHA-ADKVLPTIKS 162 (325)
T ss_pred HHHHHhhCc-ccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCc-CCCEEEEEeCC-hHhChHHHHH
Confidence 444443211 123456888899887754 56788999988864 33455555554 5677788999
Q ss_pred cCCeEEEeCCCCHHHHHHHHHH
Q 012655 334 RADIKAYVGPPTLQARYEILRS 355 (459)
Q Consensus 334 R~~~~i~~~~P~~~~r~~Il~~ 355 (459)
|+ ..+.+++|+.++..+.+..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 7788999999887777654
No 220
>PRK08181 transposase; Validated
Probab=98.60 E-value=7.7e-08 Score=93.39 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=68.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchh-hHHHHHHHHHHHHHHHhcccchhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSES-GKLVAKLFQKIQEMVEEENNLVFVL 272 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~-~~~v~~~f~~~~~~~~~~~~~~ill 272 (459)
+.+++|+||+|||||+|+.+++..+-.. +..++.+...+++....... .......+... ....+|+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~------g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l-------~~~dLLI 172 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIEN------GWRVLFTRTTDLVQKLQVARRELQLESAIAKL-------DKFDLLI 172 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHc------CCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH-------hcCCEEE
Confidence 4669999999999999999999877321 22335566555544321110 01111222222 3568999
Q ss_pred hhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCC-Ccc---------cHHHhccC---CeEE
Q 012655 273 IDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT-AAI---------DIAFVDRA---DIKA 339 (459)
Q Consensus 273 IDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~-~~l---------d~al~~R~---~~~i 339 (459)
|||++..... ......|+..++..... +- +|.|||.+ ..+ ..++++|. ...+
T Consensus 173 IDDlg~~~~~-------------~~~~~~Lf~lin~R~~~-~s-~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i 237 (269)
T PRK08181 173 LDDLAYVTKD-------------QAETSVLFELISARYER-RS-ILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIF 237 (269)
T ss_pred EeccccccCC-------------HHHHHHHHHHHHHHHhC-CC-EEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEE
Confidence 9998754321 23345666666654333 33 44555654 222 23556775 3445
Q ss_pred EeCCCC
Q 012655 340 YVGPPT 345 (459)
Q Consensus 340 ~~~~P~ 345 (459)
.+.-.+
T Consensus 238 ~~~g~s 243 (269)
T PRK08181 238 EMNVES 243 (269)
T ss_pred ecCCcc
Confidence 555544
No 221
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.59 E-value=2.3e-08 Score=96.26 Aligned_cols=44 Identities=27% Similarity=0.465 Sum_probs=37.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.|..|+.+.|.||+|+|||||+|+||+.. .|+.+.|.+++..+
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe-------~p~~G~I~~~~~~l 66 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLE-------TPDAGRIRLNGRVL 66 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCcC-------CCCCceEEECCEec
Confidence 556679999999999999999999999988 56677788887733
No 222
>PRK06921 hypothetical protein; Provisional
Probab=98.58 E-value=2.9e-07 Score=89.46 Aligned_cols=113 Identities=15% Similarity=0.241 Sum_probs=60.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
+.+++|+||+|+|||+|+.++|+.+.... +..++++...+++.. +...|......+.......+|+|
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-----g~~v~y~~~~~l~~~--------l~~~~~~~~~~~~~~~~~dlLiI 183 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-----GVPVLYFPFVEGFGD--------LKDDFDLLEAKLNRMKKVEVLFI 183 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-----CceEEEEEHHHHHHH--------HHHHHHHHHHHHHHhcCCCEEEE
Confidence 45699999999999999999999874220 123345554443221 11122222222222235689999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI 327 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l 327 (459)
||++.= +.|.+ .........|+..++.....++.+||+|...+..+
T Consensus 184 DDl~~~-------~~g~e-~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el 229 (266)
T PRK06921 184 DDLFKP-------VNGKP-RATEWQIEQMYSVLNYRYLNHKPILISSELTIDEL 229 (266)
T ss_pred eccccc-------cCCCc-cCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 998320 01111 11223345566666655444444555444344443
No 223
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.57 E-value=1.3e-07 Score=86.03 Aligned_cols=111 Identities=20% Similarity=0.273 Sum_probs=64.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccc----------cc-------cchh----
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS----------KW-------FSES---- 247 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~----------~~-------~~e~---- 247 (459)
+.+..|..+.|.||+|+|||||++.|++... +..+.+.+++..+.. .+ +..+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-------~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 95 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLR-------PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAEN 95 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccC-------CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHH
Confidence 5566789999999999999999999999873 223334444432210 00 0000
Q ss_pred --hHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCC
Q 012655 248 --GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (459)
Q Consensus 248 --~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~ 323 (459)
.....+...-++.+ ...|.++++||-.. ..+......+.+.+..+...+..+|++||+.
T Consensus 96 lLS~G~~qrv~la~al---~~~p~~lllDEPt~--------------~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 96 ILSGGQRQRLGLARAL---YGNPRILVLDEPNS--------------HLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred CcCHHHHHHHHHHHHH---hcCCCEEEEECCcc--------------ccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 00011111112222 24788999999432 1223444556666666655567888888875
No 224
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=1.8e-07 Score=80.61 Aligned_cols=122 Identities=26% Similarity=0.425 Sum_probs=66.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
++.++|+||.|+||||+++.+++.+. +....++++..+........ ..+.+...+.. .....+++|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-------~~~~~~yi~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~i~i 67 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-------PPENILYINFDDPRDRRLAD-----PDLLEYFLELI--KPGKKYIFI 67 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-------ccccceeeccCCHHHHHHhh-----hhhHHHHHHhh--ccCCcEEEE
Confidence 46799999999999999999998874 22334677766543211000 00111122111 125678999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCc---ccHHHhccCCeEEEeCCCCHHH
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---IDIAFVDRADIKAYVGPPTLQA 348 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~---ld~al~~R~~~~i~~~~P~~~~ 348 (459)
||++.+... ...+..+. +. .....+++++++.... ....+.+|. ..+.+.|.+..+
T Consensus 68 DEiq~~~~~-------------~~~lk~l~---d~--~~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 68 DEIQYLPDW-------------EDALKFLV---DN--GPNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred ehhhhhccH-------------HHHHHHHH---Hh--ccCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 999877331 12222222 22 1122344444443322 234556776 567788877654
No 225
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.54 E-value=1.3e-07 Score=85.45 Aligned_cols=102 Identities=25% Similarity=0.379 Sum_probs=63.2
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHH-----------HHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ-----------EMVE 263 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~-----------~~~~ 263 (459)
..|+|+|++||||+.+|++|.+... ..+.+++.++|..+.... .-..+|.... ..++
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~------r~~~pfi~vnc~~~~~~~------~e~~LFG~~~~~~~~~~~~~~G~l~ 90 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSP------RKNGPFISVNCAALPEEL------LESELFGHEKGAFTGARSDKKGLLE 90 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCST------TTTS-EEEEETTTS-HHH------HHHHHHEBCSSSSTTTSSEBEHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhh------cccCCeEEEehhhhhcch------hhhhhhccccccccccccccCCcee
Confidence 3499999999999999999988543 345678999998763221 1122222100 1111
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--C-------CCCEEEEEecCCC
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNIT 324 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~--~-------~~~viIi~Ttn~~ 324 (459)
. .....||||||+.|.. .++..|+..|+.-. + ..++-||+||+.+
T Consensus 91 ~-A~~GtL~Ld~I~~L~~---------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 91 Q-ANGGTLFLDEIEDLPP---------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp H-TTTSEEEEETGGGS-H---------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred e-ccceEEeecchhhhHH---------------HHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 1 2457899999998865 56677778777421 1 1257888888853
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.54 E-value=2.1e-07 Score=92.98 Aligned_cols=115 Identities=19% Similarity=0.218 Sum_probs=66.9
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccch---hhHHHHHHHHHHHHHHHhcccchhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE---SGKLVAKLFQKIQEMVEEENNLVFV 271 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e---~~~~v~~~f~~~~~~~~~~~~~~il 271 (459)
.+++|+||+|+|||+|+.++|+++-.. +..++.+...+++...... ........++.+ ....+|
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~------g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l-------~~~DLL 250 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR------GKSVIYRTADELIEILREIRFNNDKELEEVYDLL-------INCDLL 250 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC------CCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh-------ccCCEE
Confidence 559999999999999999999988421 2345667666654432110 000011111211 245799
Q ss_pred hhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc----cHHHhccC
Q 012655 272 LIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI----DIAFVDRA 335 (459)
Q Consensus 272 lIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l----d~al~~R~ 335 (459)
+|||+.... ........|+..++.....++.+||+|.-.+..+ ++.+.+|+
T Consensus 251 IIDDlG~e~-------------~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 251 IIDDLGTEK-------------ITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred EEeccCCCC-------------CCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 999975432 1234456677777765544555555554444443 44566664
No 227
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.52 E-value=1.4e-06 Score=92.39 Aligned_cols=165 Identities=16% Similarity=0.238 Sum_probs=96.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
..|++++|.....+.+.+.+. .+.... ..|||+|++||||+++|++|..... ..+.+++.+|
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~---~~A~~~---------~pVLI~GE~GTGKe~lA~~IH~~S~------r~~~pfv~in 270 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVR---LYARSD---------ATVLILGESGTGKELVAQAIHQLSG------RRDFPFVAIN 270 (526)
T ss_pred cchhheeeCCHHHHHHHHHHH---HHhCCC---------CcEEEECCCCcCHHHHHHHHHHhcC------cCCCCEEEec
Confidence 346777777765555555543 233222 3499999999999999999987653 3456679999
Q ss_pred cccccccccchhhHHHHHHHHH-------HH-----HHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHH
Q 012655 236 AHSLFSKWFSESGKLVAKLFQK-------IQ-----EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (459)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~-------~~-----~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (459)
|..+...+. -..+|.. +. .+++ ......||||||+.|.. ..+..|+
T Consensus 271 C~~l~e~ll------eseLFG~~~gaftga~~~~~~Gl~e-~A~gGTLfLdeI~~Lp~---------------~~Q~~Ll 328 (526)
T TIGR02329 271 CGAIAESLL------EAELFGYEEGAFTGARRGGRTGLIE-AAHRGTLFLDEIGEMPL---------------PLQTRLL 328 (526)
T ss_pred cccCChhHH------HHHhcCCcccccccccccccccchh-hcCCceEEecChHhCCH---------------HHHHHHH
Confidence 987642211 1112211 00 0111 12457899999998865 4456677
Q ss_pred HHHHhhc--C-------CCCEEEEEecCCCC-------cccHHHhccCC-eEEEeCCCCH--HHHHHHHHHHHHHH
Q 012655 304 TQMDKLK--S-------SPNVIILTTSNITA-------AIDIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQEL 360 (459)
Q Consensus 304 ~~l~~l~--~-------~~~viIi~Ttn~~~-------~ld~al~~R~~-~~i~~~~P~~--~~r~~Il~~~l~~~ 360 (459)
..++.-. + ...+-+|++|+..- .+...+..|+. ..+.+|+..+ ++...++..++.+.
T Consensus 329 ~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~ 404 (526)
T TIGR02329 329 RVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQA 404 (526)
T ss_pred HHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHH
Confidence 7665321 1 11345666666542 13334445663 5566666554 35556677777765
No 228
>PRK09183 transposase/IS protein; Provisional
Probab=98.51 E-value=1.6e-07 Score=91.05 Aligned_cols=104 Identities=23% Similarity=0.237 Sum_probs=57.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccch-hhHHHHHHHHHHHHHHHhcccchhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE-SGKLVAKLFQKIQEMVEEENNLVFVL 272 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e-~~~~v~~~f~~~~~~~~~~~~~~ill 272 (459)
+.+++|+||||||||+|+.+++...... +..+..++..++...+... ....+..+++... ..+.+++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~------G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~------~~~dlLi 169 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA------GIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV------MAPRLLI 169 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc------CCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh------cCCCEEE
Confidence 5779999999999999999998875321 1223445555443222110 0111223333221 2567999
Q ss_pred hhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCC
Q 012655 273 IDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT 324 (459)
Q Consensus 273 IDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~ 324 (459)
|||++.... .....+.|+..++.....+ . +|.|||.+
T Consensus 170 iDdlg~~~~-------------~~~~~~~lf~li~~r~~~~-s-~iiTsn~~ 206 (259)
T PRK09183 170 IDEIGYLPF-------------SQEEANLFFQVIAKRYEKG-S-MILTSNLP 206 (259)
T ss_pred EcccccCCC-------------ChHHHHHHHHHHHHHHhcC-c-EEEecCCC
Confidence 999865322 1233445666666543333 3 45566654
No 229
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.51 E-value=1.1e-06 Score=93.43 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=96.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
.+.++|.....+.+.+.+.. .... +..|+|+|++||||+++|++|..... ..+..++.+||.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~---~a~~---------~~pVlI~Ge~GtGK~~~A~~ih~~s~------r~~~p~v~v~c~ 247 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEV---VAAS---------DLNVLILGETGVGKELVARAIHAASP------RADKPLVYLNCA 247 (509)
T ss_pred CCceeecCHHHHHHHHHHHH---HhCC---------CCcEEEECCCCccHHHHHHHHHHhCC------cCCCCeEEEEcc
Confidence 34566666666666555543 2222 24499999999999999999998764 234567999998
Q ss_pred cccccccchhhHHHHHHHHHHHH-----------HHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHH
Q 012655 238 SLFSKWFSESGKLVAKLFQKIQE-----------MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (459)
Q Consensus 238 ~l~~~~~~e~~~~v~~~f~~~~~-----------~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (459)
.+..... -..+|...+. .+. ......||||||+.+.. ..+..|+..+
T Consensus 248 ~~~~~~~------e~~lfG~~~g~~~ga~~~~~g~~~-~a~gGtL~ldeI~~L~~---------------~~Q~~Ll~~l 305 (509)
T PRK05022 248 ALPESLA------ESELFGHVKGAFTGAISNRSGKFE-LADGGTLFLDEIGELPL---------------ALQAKLLRVL 305 (509)
T ss_pred cCChHHH------HHHhcCccccccCCCcccCCcchh-hcCCCEEEecChhhCCH---------------HHHHHHHHHH
Confidence 7642211 1112221100 111 12457899999998865 4456666666
Q ss_pred Hhhc---------CCCCEEEEEecCCCC-------cccHHHhccCC-eEEEeCCCCH--HHHHHHHHHHHHHHH
Q 012655 307 DKLK---------SSPNVIILTTSNITA-------AIDIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELI 361 (459)
Q Consensus 307 ~~l~---------~~~~viIi~Ttn~~~-------~ld~al~~R~~-~~i~~~~P~~--~~r~~Il~~~l~~~~ 361 (459)
+.-. ....+-||++||..- .+...+..|+. ..+.+|+..+ ++...++++++.+..
T Consensus 306 ~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~ 379 (509)
T PRK05022 306 QYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNR 379 (509)
T ss_pred hcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHH
Confidence 5321 112466777777542 24555666663 3455665544 344566777777653
No 230
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.51 E-value=3.3e-07 Score=90.84 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=24.3
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+++++|+||+|+|||+|+.++|+++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999984
No 231
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.51 E-value=1.9e-06 Score=94.38 Aligned_cols=165 Identities=18% Similarity=0.237 Sum_probs=96.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.....+++.+.+... ...+ ..|+|+|++||||+++|++|.+... ..+..++.+||
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~---a~~~---------~pvli~Ge~GtGK~~~A~~ih~~s~------r~~~pfv~vnc 384 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQA---AKSS---------FPVLLCGEEGVGKALLAQAIHNESE------RAAGPYIAVNC 384 (638)
T ss_pred cccceEECCHHHHHHHHHHHHH---hCcC---------CCEEEECCCCcCHHHHHHHHHHhCC------ccCCCeEEEEC
Confidence 4778888777666666655432 2222 3399999999999999999988763 23456799999
Q ss_pred ccccccccchhhHHHHHHHHHHH--------HHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQ--------EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~--------~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~ 308 (459)
..+... .....+|.... ..++ ......||||||+.+.. ..+..|+..++.
T Consensus 385 ~~~~~~------~~~~elfg~~~~~~~~~~~g~~~-~a~~GtL~ldei~~l~~---------------~~Q~~Ll~~l~~ 442 (638)
T PRK11388 385 QLYPDE------ALAEEFLGSDRTDSENGRLSKFE-LAHGGTLFLEKVEYLSP---------------ELQSALLQVLKT 442 (638)
T ss_pred CCCChH------HHHHHhcCCCCcCccCCCCCcee-ECCCCEEEEcChhhCCH---------------HHHHHHHHHHhc
Confidence 876321 11112222110 0011 12457899999998865 445667776653
Q ss_pred hc--CC-------CCEEEEEecCCCC-------cccHHHhccC-CeEEEeCCCCH--HHHHHHHHHHHHHHH
Q 012655 309 LK--SS-------PNVIILTTSNITA-------AIDIAFVDRA-DIKAYVGPPTL--QARYEILRSCLQELI 361 (459)
Q Consensus 309 l~--~~-------~~viIi~Ttn~~~-------~ld~al~~R~-~~~i~~~~P~~--~~r~~Il~~~l~~~~ 361 (459)
-. +- -.+.||+||+..- .+...+..|+ ...+.+|+..+ ++...++..++.++.
T Consensus 443 ~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~ 514 (638)
T PRK11388 443 GVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLE 514 (638)
T ss_pred CcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHH
Confidence 11 11 1466777777542 2344444555 34445555443 244566777777653
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.50 E-value=7.5e-07 Score=78.94 Aligned_cols=23 Identities=43% Similarity=0.821 Sum_probs=21.5
Q ss_pred EEEecCCCChHHHHHHHHHHHhc
Q 012655 197 VLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~ 219 (459)
++|+||||+|||++++.++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999884
No 233
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.50 E-value=2.2e-07 Score=87.12 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=37.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (459)
+.+..|..+.|.||+|||||||+..++... .|..+.+.+++.++.
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-------~pt~G~v~i~g~d~~ 70 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-------KPTSGEVLINGKDLT 70 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc-------CCCCceEEECCEEcC
Confidence 667789999999999999999999999877 455666778775543
No 234
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.50 E-value=3.4e-07 Score=86.30 Aligned_cols=82 Identities=27% Similarity=0.394 Sum_probs=46.6
Q ss_pred cchhhhhhhhHhHH-HhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCE-EEEEecCCCCcc------cHHHhccCCeE
Q 012655 267 NLVFVLIDEVESLA-AARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV-IILTTSNITAAI------DIAFVDRADIK 338 (459)
Q Consensus 267 ~~~illIDEid~l~-~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~v-iIi~Ttn~~~~l------d~al~~R~~~~ 338 (459)
...+|+|||++.+. ... .....+..+...++......++ +|++++. .... ...+..|+..
T Consensus 118 ~~~iiviDe~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~- 185 (234)
T PF01637_consen 118 KKVIIVIDEFQYLAIASE----------EDKDFLKSLRSLLDSLLSQQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSH- 185 (234)
T ss_dssp CCEEEEEETGGGGGBCTT----------TTHHHHHHHHHHHHH----TTEEEEEEESS-HHHHHHTT-TTSTTTT---E-
T ss_pred CcEEEEEecHHHHhhccc----------chHHHHHHHHHHHhhccccCCceEEEECCc-hHHHHHhhcccCccccccce-
Confidence 34899999999987 211 2346677777777775444443 4444443 2111 2345578866
Q ss_pred EEeCCCCHHHHHHHHHHHHHHH
Q 012655 339 AYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 339 i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
+.+++.+.++..+++...+.+.
T Consensus 186 ~~l~~l~~~e~~~~~~~~~~~~ 207 (234)
T PF01637_consen 186 IELKPLSKEEAREFLKELFKEL 207 (234)
T ss_dssp EEE----HHHHHHHHHHHHHCC
T ss_pred EEEeeCCHHHHHHHHHHHHHHh
Confidence 9999999999999999877763
No 235
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.50 E-value=8.6e-06 Score=87.97 Aligned_cols=49 Identities=31% Similarity=0.434 Sum_probs=41.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
.+|++++++++.++.|...+.. +++++|+|||||||||+++++++.+..
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 4799999999998887765543 346999999999999999999998753
No 236
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.50 E-value=6.3e-07 Score=85.42 Aligned_cols=31 Identities=39% Similarity=0.532 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||||+|||||+|++.+.+.
T Consensus 25 l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 25 LSVEKGEITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 5567789999999999999999999999773
No 237
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.49 E-value=6.4e-06 Score=83.71 Aligned_cols=48 Identities=8% Similarity=-0.041 Sum_probs=33.0
Q ss_pred HHHHHHHccCCChHHHhchHHHHHHh---hcCCCCCCHHHHHHHHHHHHHH
Q 012655 405 LLEAAEACEGLSGRSLRKLPFLAHAA---LANPNGCDPSKFLLTVIDTARK 452 (459)
Q Consensus 405 L~~la~~~~G~Sgr~L~~L~~~a~a~---~~~~~~it~~d~~~Al~~~~~~ 452 (459)
+...-+...++++||.+.+-..+.+. ..-...+|.+++.+.++-+++-
T Consensus 386 ~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~~Ale~ 436 (449)
T TIGR02688 386 VDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPHGTITKEEFTECLEPALEG 436 (449)
T ss_pred hhhheecCCCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 33444456788999988877766443 2455779999999888666543
No 238
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=1.9e-06 Score=87.22 Aligned_cols=173 Identities=21% Similarity=0.213 Sum_probs=107.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 160 ~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
.+.|.+.-...+.+|+...+-. +.+..+++.|-||+|||.+...+...+... ......+++||.++
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~----~~~~~~v~inc~sl 216 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------NTSGSLYVSGQPGTGKTALLSRVLDSLSKS----SKSPVTVYINCTSL 216 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------ccCcceEeeCCCCcchHHHHHHHHHhhhhh----cccceeEEEeeccc
Confidence 4666777777777777654322 235669999999999999998777766432 22235588999875
Q ss_pred cc------cccchh-----h-HHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHH
Q 012655 240 FS------KWFSES-----G-KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (459)
Q Consensus 240 ~~------~~~~e~-----~-~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~ 307 (459)
.. +.++.- + ..-.++.............+-++++||+|.|..+.+ +++..++.+ .
T Consensus 217 ~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~------------~vLy~lFew-p 283 (529)
T KOG2227|consen 217 TEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ------------TVLYTLFEW-P 283 (529)
T ss_pred cchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc------------ceeeeehhc-c
Confidence 32 111111 0 000111112222222234577899999999986442 233333322 1
Q ss_pred hhcCCCCEEEEEecCCCCcccHHHh---cc---CCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 308 KLKSSPNVIILTTSNITAAIDIAFV---DR---ADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 308 ~l~~~~~viIi~Ttn~~~~ld~al~---~R---~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
. ....++++|+-.|..+.-|..+. .| -+..+.|++++.++..+|+...+.+.
T Consensus 284 ~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 284 K-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred c-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 1 24567899999997665554433 22 25678999999999999999999875
No 239
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.49 E-value=2.4e-06 Score=90.66 Aligned_cols=170 Identities=16% Similarity=0.232 Sum_probs=95.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc--CCCCcceEEEE
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS--SRYPQCQLVEV 234 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~--~~~~~~~~i~i 234 (459)
.|++++|....-+.+.+.+. .+...+ ..|||+|++||||+++|++|...+..... +...+.+++.+
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~---~~A~s~---------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTIL---LYARSS---------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred chhheeeCCHHHHHHHHHHH---HHhCCC---------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46677887765555555443 233332 34999999999999999999987321111 12345678999
Q ss_pred ccccccccccchhhHHHHHHHHH-------HH-----HHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHH
Q 012655 235 NAHSLFSKWFSESGKLVAKLFQK-------IQ-----EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL 302 (459)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~-------~~-----~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~l 302 (459)
||..+..... -..+|.. +. .+++ ......||||||+.+.. ..+..|
T Consensus 285 nCaal~e~ll------eseLFG~~~gaftga~~~~~~Gl~e-~A~gGTLfLdeI~~Lp~---------------~~Q~kL 342 (538)
T PRK15424 285 NCGAIAESLL------EAELFGYEEGAFTGSRRGGRAGLFE-IAHGGTLFLDEIGEMPL---------------PLQTRL 342 (538)
T ss_pred ecccCChhhH------HHHhcCCccccccCccccccCCchh-ccCCCEEEEcChHhCCH---------------HHHHHH
Confidence 9987643211 1112211 00 0111 12457899999998865 445666
Q ss_pred HHHHHhhc--C-------CCCEEEEEecCCCC-c------ccHHHhccC-CeEEEeCCCCH--HHHHHHHHHHHHHH
Q 012655 303 LTQMDKLK--S-------SPNVIILTTSNITA-A------IDIAFVDRA-DIKAYVGPPTL--QARYEILRSCLQEL 360 (459)
Q Consensus 303 l~~l~~l~--~-------~~~viIi~Ttn~~~-~------ld~al~~R~-~~~i~~~~P~~--~~r~~Il~~~l~~~ 360 (459)
+..++.-. + ..++-+|++||..- . +...+..|+ ...+.+|+..+ ++...+++.++.+.
T Consensus 343 l~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~ 419 (538)
T PRK15424 343 LRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQS 419 (538)
T ss_pred HhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHH
Confidence 66665321 1 12356777776542 1 233444555 24455555443 34455666666664
No 240
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=2.2e-07 Score=84.26 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++++++.+.
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5566799999999999999999999999874
No 241
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.48 E-value=1.8e-07 Score=90.46 Aligned_cols=165 Identities=24% Similarity=0.240 Sum_probs=100.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
...+++++.+++-..+.++.. ..++ .+.|+|||||+|||+...+.|..+..+. .....+.+++
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~------~~~l--------Ph~L~YgPPGtGktsti~a~a~~ly~~~---~~~~m~leln 100 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSG------MPGL--------PHLLFYGPPGTGKTSTILANARDFYSPH---PTTSMLLELN 100 (360)
T ss_pred chhhhHhcCCchhhHHHHhcc------CCCC--------CcccccCCCCCCCCCchhhhhhhhcCCC---CchhHHHHhh
Confidence 346678888887777766621 1122 2599999999999999999999985431 1222234455
Q ss_pred cccccccccchhhHHHHHHHHHHHH--HHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCC
Q 012655 236 AHSLFSKWFSESGKLVAKLFQKIQE--MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (459)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~--~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~ 313 (459)
+++-.+.-. .+.--..|+..+. .+.....+..+++||.|.+.. ..+|+|-..+.++..
T Consensus 101 aSd~rgid~---vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~---------------~AQnALRRviek~t~-- 160 (360)
T KOG0990|consen 101 ASDDRGIDP---VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR---------------DAQNALRRVIEKYTA-- 160 (360)
T ss_pred ccCccCCcc---hHHHHHHHHhhccceeccccCceeEEEecchhHhhH---------------HHHHHHHHHHHHhcc--
Confidence 544322111 1122233443332 111123678999999998876 445666666555443
Q ss_pred CEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHH
Q 012655 314 NVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQ 358 (459)
Q Consensus 314 ~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~ 358 (459)
++-++.-+|.+..+.+++.+|| ..+.+.+.+.......+.+..+
T Consensus 161 n~rF~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 161 NTRFATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred ceEEEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHh
Confidence 4555566799999999999999 4455666665555555555443
No 242
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.48 E-value=1.9e-07 Score=84.13 Aligned_cols=45 Identities=33% Similarity=0.514 Sum_probs=37.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (459)
+.+.+|..++|.||+|+||||+.|.|..+. .|..+.+.++..++.
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-------~pt~G~i~~~~~dl~ 67 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-------RPTRGKILVNGHDLS 67 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHhhh-------cCCCceEEECCeecc
Confidence 667789999999999999999999999988 445566777776653
No 243
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.47 E-value=4.8e-08 Score=96.93 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=36.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (459)
+.+..|..+.|.||+||||||++|.||+... +..+-|.+++....
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-------~~~G~I~i~g~~vt 68 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-------PTSGEILIDGRDVT 68 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCceEEECCEECC
Confidence 5677799999999999999999999999874 45566777776543
No 244
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=8.3e-07 Score=79.22 Aligned_cols=110 Identities=23% Similarity=0.324 Sum_probs=64.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccc----------cccc-hhhHHHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS----------KWFS-ESGKLVAKLFQK 257 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~----------~~~~-e~~~~v~~~f~~ 257 (459)
+.+..|..+.|.||+|+|||||++++++.+. +..+.+.+++..+.. .+.. -++.. .+...-
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-------~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l 91 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-------PTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVAL 91 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHH
Confidence 4566689999999999999999999999873 334446666644321 0000 11111 111112
Q ss_pred HHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCC
Q 012655 258 IQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (459)
Q Consensus 258 ~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~ 323 (459)
++.+. ..|.++++||... ..+......+.+.+..+...+..+++.||+.
T Consensus 92 ~~~l~---~~~~i~ilDEp~~--------------~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 140 (157)
T cd00267 92 ARALL---LNPDLLLLDEPTS--------------GLDPASRERLLELLRELAEEGRTVIIVTHDP 140 (157)
T ss_pred HHHHh---cCCCEEEEeCCCc--------------CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 22221 3678999999542 1223344555666655544456788888774
No 245
>PRK06526 transposase; Provisional
Probab=98.45 E-value=1.9e-07 Score=90.04 Aligned_cols=26 Identities=42% Similarity=0.690 Sum_probs=23.3
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+++|+||||||||+|+.+++..+-
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 45699999999999999999998873
No 246
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.45 E-value=6.7e-07 Score=81.83 Aligned_cols=44 Identities=32% Similarity=0.479 Sum_probs=35.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..+.|.||+|+|||||++.+++.. .+..+.+.+++..+
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-------~~~~G~v~~~g~~~ 63 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLL-------KPSSGEILLDGKDL 63 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC-------CCCCcEEEECCEEC
Confidence 556678999999999999999999999976 34455566766544
No 247
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.44 E-value=1.3e-06 Score=76.98 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=61.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNL 268 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~ 268 (459)
+.+..|..+.|.||+|+|||||++++++.+. +..+-+.++........+.-++.. .+...-++.++ ..|
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-------~~~G~i~~~~~~~i~~~~~lS~G~-~~rv~laral~---~~p 89 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELE-------PDEGIVTWGSTVKIGYFEQLSGGE-KMRLALAKLLL---ENP 89 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCC-------CCceEEEECCeEEEEEEccCCHHH-HHHHHHHHHHh---cCC
Confidence 5566789999999999999999999999873 334445555432111111011111 11122233222 378
Q ss_pred hhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCC
Q 012655 269 VFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (459)
Q Consensus 269 ~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~ 323 (459)
.++++||-.. ..+......+...+..+ ...++++||+.
T Consensus 90 ~illlDEP~~--------------~LD~~~~~~l~~~l~~~---~~til~~th~~ 127 (144)
T cd03221 90 NLLLLDEPTN--------------HLDLESIEALEEALKEY---PGTVILVSHDR 127 (144)
T ss_pred CEEEEeCCcc--------------CCCHHHHHHHHHHHHHc---CCEEEEEECCH
Confidence 8999999432 12223344455555544 24777777764
No 248
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.44 E-value=3.7e-06 Score=92.69 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=94.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.....+.+.+.+.. .... +..|+|+|++|||||++|++|..... ..+..++.++|
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~---~a~~---------~~pVLI~GE~GTGK~~lA~~ih~~s~------r~~~~~v~i~c 435 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEM---VAQS---------DSTVLILGETGTGKELIARAIHNLSG------RNNRRMVKMNC 435 (686)
T ss_pred cccceeecCHHHHHHHHHHHH---HhCC---------CCCEEEECCCCcCHHHHHHHHHHhcC------CCCCCeEEEec
Confidence 355677776666666655543 2222 23499999999999999999988763 23456789999
Q ss_pred cccccc-----ccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-
Q 012655 237 HSLFSK-----WFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK- 310 (459)
Q Consensus 237 ~~l~~~-----~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~- 310 (459)
..+... +|+............-...++ ......||||||+.+.. ..+..|+..++.-.
T Consensus 436 ~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le-~a~~GtL~Ldei~~L~~---------------~~Q~~L~~~l~~~~~ 499 (686)
T PRK15429 436 AAMPAGLLESDLFGHERGAFTGASAQRIGRFE-LADKSSLFLDEVGDMPL---------------ELQPKLLRVLQEQEF 499 (686)
T ss_pred ccCChhHhhhhhcCcccccccccccchhhHHH-hcCCCeEEEechhhCCH---------------HHHHHHHHHHHhCCE
Confidence 875321 122110000000000000111 12457899999998755 45566666665321
Q ss_pred -C-------CCCEEEEEecCCCC-------cccHHHhccCC-eEEEeCCCCH--HHHHHHHHHHHHHHH
Q 012655 311 -S-------SPNVIILTTSNITA-------AIDIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELI 361 (459)
Q Consensus 311 -~-------~~~viIi~Ttn~~~-------~ld~al~~R~~-~~i~~~~P~~--~~r~~Il~~~l~~~~ 361 (459)
+ ..++-+|+||+..- .+...+..|+. ..+.+|+..+ ++...+++.++.+..
T Consensus 500 ~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~ 568 (686)
T PRK15429 500 ERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIA 568 (686)
T ss_pred EeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHH
Confidence 1 13466777776542 12344445552 3344444433 234456677776653
No 249
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.44 E-value=4.9e-07 Score=77.69 Aligned_cols=112 Identities=25% Similarity=0.428 Sum_probs=57.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccc--ccc----------chhhHHHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS--KWF----------SESGKLVAKLFQKIQEM 261 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~--~~~----------~e~~~~v~~~f~~~~~~ 261 (459)
++.++++||+|+|||++++.++..+........ ...++.+++..... .+. .........+++.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 467999999999999999999998843211000 23446666544321 000 00001223333344443
Q ss_pred HHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCC
Q 012655 262 VEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (459)
Q Consensus 262 ~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~ 323 (459)
+... ...+|+|||+|.+. . ...++.+...++ ...-.++++++.+.
T Consensus 83 l~~~-~~~~lviDe~~~l~-~-------------~~~l~~l~~l~~--~~~~~vvl~G~~~l 127 (131)
T PF13401_consen 83 LDRR-RVVLLVIDEADHLF-S-------------DEFLEFLRSLLN--ESNIKVVLVGTPEL 127 (131)
T ss_dssp HHHC-TEEEEEEETTHHHH-T-------------HHHHHHHHHHTC--SCBEEEEEEESSTT
T ss_pred HHhc-CCeEEEEeChHhcC-C-------------HHHHHHHHHHHh--CCCCeEEEEEChhh
Confidence 3332 22589999999975 1 245555555444 22234556665543
No 250
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=1.1e-06 Score=79.90 Aligned_cols=31 Identities=39% Similarity=0.478 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.+++.+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5566789999999999999999999999763
No 251
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.42 E-value=2.5e-06 Score=77.77 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=68.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcc-cccCCC---CcceEEEEccccc----------cccccchhhHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI-RFSSRY---PQCQLVEVNAHSL----------FSKWFSESGKLVAKL 254 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~-~~~~~~---~~~~~i~i~~~~l----------~~~~~~e~~~~v~~~ 254 (459)
+.+..|..+.|.||+|+|||||++++....+. .+.... ....+..+.-.+. ............++.
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qr 95 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQR 95 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHH
Confidence 56777999999999999999999999642221 111100 0001111110000 001111111111222
Q ss_pred HHHHHHHHHhccc--chhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHh
Q 012655 255 FQKIQEMVEEENN--LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV 332 (459)
Q Consensus 255 f~~~~~~~~~~~~--~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~ 332 (459)
..-++.++ .. |.++++||... ..+......+...+..+...+..+|++||+... .
T Consensus 96 l~laral~---~~~~p~llLlDEPt~--------------~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~------~ 152 (176)
T cd03238 96 VKLASELF---SEPPGTLFILDEPST--------------GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV------L 152 (176)
T ss_pred HHHHHHHh---hCCCCCEEEEeCCcc--------------cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH------H
Confidence 22222222 36 88999999432 222444555666666665567889999988532 2
Q ss_pred ccCCeEEEeCC
Q 012655 333 DRADIKAYVGP 343 (459)
Q Consensus 333 ~R~~~~i~~~~ 343 (459)
..+|+++.+..
T Consensus 153 ~~~d~i~~l~~ 163 (176)
T cd03238 153 SSADWIIDFGP 163 (176)
T ss_pred HhCCEEEEECC
Confidence 34666666643
No 252
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.42 E-value=4.7e-07 Score=79.16 Aligned_cols=109 Identities=20% Similarity=0.332 Sum_probs=63.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (459)
..|+|+|++||||+++|++|...... ....++.+++..+. ..+++. .....++|+
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~------~~~~~~~~~~~~~~-----------~~~l~~--------a~~gtL~l~ 76 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGR------ANGPFIVIDCASLP-----------AELLEQ--------AKGGTLYLK 76 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTT------CCS-CCCCCHHCTC-----------HHHHHH--------CTTSEEEEE
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCc------cCCCeEEechhhCc-----------HHHHHH--------cCCCEEEEC
Confidence 44999999999999999999987653 12233444444422 222222 255789999
Q ss_pred hhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC-CCEEEEEecCCCC-----cccHHHhccCC-eEEEeCC
Q 012655 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS-PNVIILTTSNITA-----AIDIAFVDRAD-IKAYVGP 343 (459)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~-~~viIi~Ttn~~~-----~ld~al~~R~~-~~i~~~~ 343 (459)
|+|.+.. ..+..|+..+...... .++|+.++.+... .+++.+..|+. ..+.+|+
T Consensus 77 ~i~~L~~---------------~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 77 NIDRLSP---------------EAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp CGCCS-H---------------HHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred ChHHCCH---------------HHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 9998865 4456677777654322 2233333333333 24666777764 6667765
No 253
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=1.3e-06 Score=79.84 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++++++.+.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667789999999999999999999998763
No 254
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.41 E-value=2.2e-06 Score=91.33 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=97.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
..|++++|....-+++.+.+.. ....+ ..|+|+|++||||+++|+++..... .....++.++
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~---~A~~~---------~pvlI~GE~GtGK~~lA~aiH~~s~------r~~~pfv~in 262 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARK---LAMLD---------APLLITGDTGTGKDLLAYACHLRSP------RGKKPFLALN 262 (520)
T ss_pred ccccceeECCHHHHHHHHHHHH---HhCCC---------CCEEEECCCCccHHHHHHHHHHhCC------CCCCCeEEec
Confidence 4578899888766666666543 22222 3399999999999999999876542 2345679999
Q ss_pred cccccccccchhhHHHHHHHHHHH-----------HHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHH
Q 012655 236 AHSLFSKWFSESGKLVAKLFQKIQ-----------EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (459)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~-----------~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (459)
|..+...+. -..+|.... ..++. .....||||||+.+.. ..+..|+.
T Consensus 263 ca~~~~~~~------e~elFG~~~~~~~~~~~~~~g~~e~-a~~GtL~LdeI~~L~~---------------~~Q~~Ll~ 320 (520)
T PRK10820 263 CASIPDDVV------ESELFGHAPGAYPNALEGKKGFFEQ-ANGGSVLLDEIGEMSP---------------RMQAKLLR 320 (520)
T ss_pred cccCCHHHH------HHHhcCCCCCCcCCcccCCCChhhh-cCCCEEEEeChhhCCH---------------HHHHHHHH
Confidence 987643211 111221110 01111 2457899999998865 34556666
Q ss_pred HHHhh--cC-------CCCEEEEEecCCCC-------cccHHHhccCC-eEEEeCCCCH--HHHHHHHHHHHHHHH
Q 012655 305 QMDKL--KS-------SPNVIILTTSNITA-------AIDIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELI 361 (459)
Q Consensus 305 ~l~~l--~~-------~~~viIi~Ttn~~~-------~ld~al~~R~~-~~i~~~~P~~--~~r~~Il~~~l~~~~ 361 (459)
.++.- .+ ..++.||+||+.+- .+.+.+..|+. ..+.+|+..+ +.+..++..++.+..
T Consensus 321 ~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~ 396 (520)
T PRK10820 321 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFA 396 (520)
T ss_pred HHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHH
Confidence 66531 11 12356777665432 24555667763 4555555554 245556667776653
No 255
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5.5e-06 Score=91.20 Aligned_cols=132 Identities=23% Similarity=0.331 Sum_probs=84.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
=+.++|+++.-..+.+.+ .-++.|.... .+.-.++|.||.|+|||-||+++|..+ | .....++.++.+
T Consensus 561 ~~~V~gQ~eAv~aIa~AI----~~sr~gl~~~--~~~awflflGpdgvGKt~lAkaLA~~~---F---gse~~~IriDms 628 (898)
T KOG1051|consen 561 HERVIGQDEAVAAIAAAI----RRSRAGLKDP--NPDAWFLFLGPDGVGKTELAKALAEYV---F---GSEENFIRLDMS 628 (898)
T ss_pred HhhccchHHHHHHHHHHH----HhhhcccCCC--CCCeEEEEECCCchhHHHHHHHHHHHH---c---CCccceEEechh
Confidence 345566666555555544 3444444322 234569999999999999999999988 2 345566888877
Q ss_pred ccc------cc---ccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh
Q 012655 238 SLF------SK---WFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (459)
Q Consensus 238 ~l~------~~---~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~ 308 (459)
++. +. |.|.. ....+...++. ...+||+|||||..- ..+++.|+..+|.
T Consensus 629 e~~evskligsp~gyvG~e--~gg~Lteavrr-----rP~sVVLfdeIEkAh---------------~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 629 EFQEVSKLIGSPPGYVGKE--EGGQLTEAVKR-----RPYSVVLFEEIEKAH---------------PDVLNILLQLLDR 686 (898)
T ss_pred hhhhhhhccCCCcccccch--hHHHHHHHHhc-----CCceEEEEechhhcC---------------HHHHHHHHHHHhc
Confidence 532 11 22221 12233333333 466899999999653 4678888888875
Q ss_pred hc---------CCCCEEEEEecCC
Q 012655 309 LK---------SSPNVIILTTSNI 323 (459)
Q Consensus 309 l~---------~~~~viIi~Ttn~ 323 (459)
-+ ..+++|||.|+|.
T Consensus 687 GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 687 GRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred CccccCCCcEeeccceEEEEeccc
Confidence 42 2367999999886
No 256
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.38 E-value=2.2e-06 Score=78.60 Aligned_cols=31 Identities=35% Similarity=0.377 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++...
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667789999999999999999999999874
No 257
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.38 E-value=1.9e-06 Score=78.62 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=28.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.+++...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5677799999999999999999999999873
No 258
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.36 E-value=1.6e-06 Score=80.64 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=24.6
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
.+..++.++|.||||+||||++|.+++..
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 34446889999999999999999999755
No 259
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.36 E-value=2.3e-06 Score=75.75 Aligned_cols=44 Identities=25% Similarity=0.455 Sum_probs=34.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..++|+||+|||||||.|.+|.... +..+.+.+.+.++
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Lis-------p~~G~l~f~Ge~v 67 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLIS-------PTSGTLLFEGEDV 67 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHhccC-------CCCceEEEcCccc
Confidence 4556689999999999999999999999873 4445555555543
No 260
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.36 E-value=3.7e-07 Score=90.07 Aligned_cols=44 Identities=39% Similarity=0.434 Sum_probs=35.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..+.|.||||+|||||.+++++.+. |..+.+.+++.+.
T Consensus 26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-------p~~G~i~i~G~~~ 69 (293)
T COG1131 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-------PTSGEILVLGYDV 69 (293)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-------CCceEEEEcCEeC
Confidence 5677789999999999999999999999883 4455566666443
No 261
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.35 E-value=1.3e-06 Score=82.07 Aligned_cols=119 Identities=22% Similarity=0.211 Sum_probs=61.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc--cccc----ccc-hhhHHHHHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS--LFSK----WFS-ESGKLVAKLFQKIQEMVEEEN 266 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~--l~~~----~~~-e~~~~v~~~f~~~~~~~~~~~ 266 (459)
+..+||||+||+||||+|+.+++..- + +..+... +.+. ... ...+....+.+.+...-....
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~~~--~---------~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~ 80 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGKTL--V---------LSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAV 80 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCCCE--E---------EeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccc
Confidence 35699999999999999999974321 0 1111100 0000 000 000111111122221111234
Q ss_pred cchhhhhhhhHhHHH------hhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCC
Q 012655 267 NLVFVLIDEVESLAA------ARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (459)
Q Consensus 267 ~~~illIDEid~l~~------~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~ 323 (459)
....|+||.++.+.. .+.......+..+-..+.+.++..+..+...+.-||+++|..
T Consensus 81 ~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe~ 143 (220)
T TIGR01618 81 KYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWEL 143 (220)
T ss_pred cCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEeec
Confidence 568899999988755 222211111333334566677778877776666666666654
No 262
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=1.1e-07 Score=90.53 Aligned_cols=31 Identities=39% Similarity=0.538 Sum_probs=28.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..++|+||||+|||||++.+++.+.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 25 LEIEKGERVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCcCc
Confidence 5567789999999999999999999999883
No 263
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.33 E-value=1.4e-06 Score=81.12 Aligned_cols=49 Identities=27% Similarity=0.374 Sum_probs=38.4
Q ss_pred CCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccc
Q 012655 185 GVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS 241 (459)
Q Consensus 185 g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~ 241 (459)
|++ +.+..|..+.|.|+||+||||++++|++.... ..+.|.+.+.++..
T Consensus 21 gvs-l~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~-------~~G~I~~~G~dit~ 69 (237)
T COG0410 21 GVS-LEVERGEIVALLGRNGAGKTTLLKTIMGLVRP-------RSGRIIFDGEDITG 69 (237)
T ss_pred eee-eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-------CCeeEEECCeecCC
Confidence 444 67778999999999999999999999998843 34556667666543
No 264
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.32 E-value=5.2e-05 Score=78.42 Aligned_cols=29 Identities=41% Similarity=0.800 Sum_probs=27.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
++.+||+||+||||||.++.|+.++++.+
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 57899999999999999999999999876
No 265
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.32 E-value=1.2e-06 Score=87.03 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 28 l~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 28 FHVQRGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5667789999999999999999999999873
No 266
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.31 E-value=4.2e-07 Score=83.06 Aligned_cols=103 Identities=21% Similarity=0.322 Sum_probs=56.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchh-hHHHHHHHHHHHHHHHhcccchhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSES-GKLVAKLFQKIQEMVEEENNLVFVL 272 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~-~~~v~~~f~~~~~~~~~~~~~~ill 272 (459)
+.+++|+||+|+|||+||.++++++-. .+..+..++..+++....... .......++.. ....+|+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~------~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l-------~~~dlLi 113 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR------KGYSVLFITASDLLDELKQSRSDGSYEELLKRL-------KRVDLLI 113 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH------TT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH-------HTSSCEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc------CCcceeEeecCceeccccccccccchhhhcCcc-------ccccEec
Confidence 577999999999999999999988732 122346677776654332111 01112222222 2457999
Q ss_pred hhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCC
Q 012655 273 IDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT 324 (459)
Q Consensus 273 IDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~ 324 (459)
|||+.... ........++..++....+ +- +|.|||..
T Consensus 114 lDDlG~~~-------------~~~~~~~~l~~ii~~R~~~-~~-tIiTSN~~ 150 (178)
T PF01695_consen 114 LDDLGYEP-------------LSEWEAELLFEIIDERYER-KP-TIITSNLS 150 (178)
T ss_dssp EETCTSS----------------HHHHHCTHHHHHHHHHT--E-EEEEESS-
T ss_pred ccccceee-------------ecccccccchhhhhHhhcc-cC-eEeeCCCc
Confidence 99974321 1223445566666654433 33 44477754
No 267
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.31 E-value=1.9e-05 Score=74.64 Aligned_cols=195 Identities=21% Similarity=0.271 Sum_probs=112.4
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccc-----cccchhh----HHHHHHHH----HHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS-----KWFSESG----KLVAKLFQ----KIQEM 261 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~-----~~~~e~~----~~v~~~f~----~~~~~ 261 (459)
..+.++|+-|||||.++|++...+... ..-.+.++.+.+.. .|+.+-+ ..+..... .....
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d------~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNED------QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCC------ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 368899999999999999777776421 11224555554421 1221111 12222222 22233
Q ss_pred HHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc-c---HHHhccCCe
Q 012655 262 VEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI-D---IAFVDRADI 337 (459)
Q Consensus 262 ~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l-d---~al~~R~~~ 337 (459)
......|.++++||.+.+.... ...+..|.+.-.+....-.+++++-......+ - ..+-.|++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~------------le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~i 193 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSA------------LEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDI 193 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhH------------HHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEE
Confidence 3345677899999999886522 12222222222221111235555543322222 1 223478988
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCCh
Q 012655 338 KAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSG 417 (459)
Q Consensus 338 ~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sg 417 (459)
.+.+++.+.++....+++.++... . ...+ .....+..++.+++| -+
T Consensus 194 r~~l~P~~~~~t~~yl~~~Le~a~---~--------~~~l----------------------~~~~a~~~i~~~sqg-~P 239 (269)
T COG3267 194 RIELPPLTEAETGLYLRHRLEGAG---L--------PEPL----------------------FSDDALLLIHEASQG-IP 239 (269)
T ss_pred EEecCCcChHHHHHHHHHHHhccC---C--------Cccc----------------------CChhHHHHHHHHhcc-ch
Confidence 899999999989999999888741 1 0000 011247788888999 88
Q ss_pred HHHhchHHHH--HHhhcCCCCCCHHH
Q 012655 418 RSLRKLPFLA--HAALANPNGCDPSK 441 (459)
Q Consensus 418 r~L~~L~~~a--~a~~~~~~~it~~d 441 (459)
|.+..++..| .+...+...++...
T Consensus 240 ~lin~~~~~Al~~a~~a~~~~v~~a~ 265 (269)
T COG3267 240 RLINNLATLALDAAYSAGEDGVSEAE 265 (269)
T ss_pred HHHHHHHHHHHHHHHHcCCCccchhh
Confidence 9999999888 55566777666544
No 268
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=3.1e-06 Score=82.62 Aligned_cols=126 Identities=13% Similarity=0.154 Sum_probs=79.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccc---------cCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF---------SSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE 265 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~---------~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~ 265 (459)
..+||+||.|+||+++|.++|+.+-..- ....|+..++.-.+.. . .-.-..++.+.+.+... ...
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~---~--~I~idqiR~l~~~~~~~-p~e 93 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG---R--LHSIETPRAIKKQIWIH-PYE 93 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC---C--cCcHHHHHHHHHHHhhC-ccC
Confidence 4589999999999999999999884321 0001121111101000 0 00122344443333321 112
Q ss_pred ccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCC
Q 012655 266 NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPP 344 (459)
Q Consensus 266 ~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P 344 (459)
+...|++||++|.+.. ...|+||+.|+. +.+++++|..++.++.+-+.+++|+ ..+.|+++
T Consensus 94 ~~~kv~ii~~ad~mt~---------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTL---------------DAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCH---------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 3557999999998865 567999999988 5667777777777888989999999 66666654
No 269
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.31 E-value=1.1e-06 Score=82.43 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=34.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
+.+..|..+-|+|++|||||||+|++++... +..+-|.+++.
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-------p~~G~I~~~G~ 69 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGLEK-------PSSGSILLDGK 69 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhcccC-------CCCceEEECCc
Confidence 6677899999999999999999999999874 34444666654
No 270
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.30 E-value=2.3e-06 Score=82.66 Aligned_cols=103 Identities=25% Similarity=0.406 Sum_probs=59.2
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHH--HHH-HHHhcccchh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQK--IQE-MVEEENNLVF 270 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~--~~~-~~~~~~~~~i 270 (459)
+.+++|+||||+|||+||-||+.++-.. +..++.+...+++... ...+.. ... +...-....+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~------g~sv~f~~~~el~~~L--------k~~~~~~~~~~~l~~~l~~~dl 170 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKA------GISVLFITAPDLLSKL--------KAAFDEGRLEEKLLRELKKVDL 170 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHc------CCeEEEEEHHHHHHHH--------HHHHhcCchHHHHHHHhhcCCE
Confidence 5679999999999999999999998521 2334556666654332 121211 111 1111235689
Q ss_pred hhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCC
Q 012655 271 VLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITA 325 (459)
Q Consensus 271 llIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~ 325 (459)
|+|||+..... +....+.++..+......... +.|+|.+.
T Consensus 171 LIiDDlG~~~~-------------~~~~~~~~~q~I~~r~~~~~~--~~tsN~~~ 210 (254)
T COG1484 171 LIIDDIGYEPF-------------SQEEADLLFQLISRRYESRSL--IITSNLSF 210 (254)
T ss_pred EEEecccCccC-------------CHHHHHHHHHHHHHHHhhccc--eeecCCCh
Confidence 99999754322 122334444555544433334 67778653
No 271
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=6.1e-06 Score=76.73 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=40.0
Q ss_pred cCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccc
Q 012655 184 KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS 241 (459)
Q Consensus 184 ~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~ 241 (459)
+|+| +.+..|....|.||||+|||||+.+|++.-++.. ..+-+.+++.++..
T Consensus 21 kgvn-L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V-----t~G~I~~~GedI~~ 72 (251)
T COG0396 21 KGVN-LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-----TEGEILFDGEDILE 72 (251)
T ss_pred cCcc-eeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceE-----ecceEEECCccccc
Confidence 3555 6778899999999999999999999999876543 33446677766643
No 272
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.29 E-value=1.5e-06 Score=87.59 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=28.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||||+|||||++.|++.+.
T Consensus 62 ~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 62 FTVASGECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5677799999999999999999999999873
No 273
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.29 E-value=2.9e-06 Score=88.31 Aligned_cols=237 Identities=16% Similarity=0.205 Sum_probs=121.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCc---ce-EEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ---CQ-LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVF 270 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~---~~-~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~i 270 (459)
-++||+|.||||||-++|.+++....-...-..+ .+ ..++.-+.+...|.-+.+..+- ....+
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVL-------------ADkGv 549 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVL-------------ADKGV 549 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEE-------------ccCce
Confidence 3599999999999999999998775433111111 11 2233334445566666554321 13468
Q ss_pred hhhhhhHhHHHhhhhccCCCCCCchHHHHHH-HHHHHHhhcCCCCEEEEEecCCCC-------------cccHHHhccCC
Q 012655 271 VLIDEVESLAAARKAALSGSEPSDSIRVVNA-LLTQMDKLKSSPNVIILTTSNITA-------------AIDIAFVDRAD 336 (459)
Q Consensus 271 llIDEid~l~~~r~~~ls~~e~~~~~~~~~~-ll~~l~~l~~~~~viIi~Ttn~~~-------------~ld~al~~R~~ 336 (459)
.+|||+|++...-..+....+...+..+-.+ +.+.| +.++.||+++|+.. .+...+++|||
T Consensus 550 ClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsL-----qArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFD 624 (854)
T KOG0477|consen 550 CLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSL-----QARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFD 624 (854)
T ss_pred EEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHH-----HhhhhhheecCCCCCccCCccchhhccccccchhhhcc
Confidence 8899999987654333333333333332222 22322 23567888888732 24567889999
Q ss_pred eEEEeC-CCCHHHH----HHHHHHHHHHHHHh---ccccCCc------cccCCcccchHHHhhcCCchhHHhhhhhhHHH
Q 012655 337 IKAYVG-PPTLQAR----YEILRSCLQELIRT---GIISNFQ------DCDQSMLPNFSILKEKLSNPDIQEADRSQHFY 402 (459)
Q Consensus 337 ~~i~~~-~P~~~~r----~~Il~~~l~~~~~~---~~~~~~~------~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 402 (459)
+...+. .-++.+- ..++.++.+..... ..+...+ ...+..+.++.-++.....+.+.+... ...+
T Consensus 625 iLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~-~K~s 703 (854)
T KOG0477|consen 625 ILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDM-DKIS 703 (854)
T ss_pred eeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccH-HHHH
Confidence 877653 2232222 23344444332111 0000000 011122333444444433333333210 0111
Q ss_pred HHHHHHHHH---ccC--CChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 403 KQLLEAAEA---CEG--LSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 403 ~~L~~la~~---~~G--~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
.....+-+. +.+ .+-|-|..++..+ ||.+..+..++.+|+..|++-..
T Consensus 704 ~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~l 758 (854)
T KOG0477|consen 704 SVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVML 758 (854)
T ss_pred HHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHH
Confidence 222223222 222 3456676666554 88888888999999888875543
No 274
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=3e-06 Score=81.08 Aligned_cols=133 Identities=15% Similarity=0.139 Sum_probs=81.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccccc----CCCCcceEEEEccccccccccch----hhHHHHHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFS----SRYPQCQLVEVNAHSLFSKWFSE----SGKLVAKLFQKIQEMVEEE 265 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~----~~~~~~~~i~i~~~~l~~~~~~e----~~~~v~~~f~~~~~~~~~~ 265 (459)
+..+||+||.|+||..+|.++|+.+-..-. ...+.|..+.-..|.-+-....+ ....++.+.+......-..
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~ 86 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVES 86 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhc
Confidence 566999999999999999999998743210 11111222211111111000011 1123333333322111011
Q ss_pred ccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCC
Q 012655 266 NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPP 344 (459)
Q Consensus 266 ~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P 344 (459)
....|++|+++|.+.. ...|+||+.++. +..++++|.+|+.++.+-+.+++|+ ..+.++.+
T Consensus 87 ~~~KV~II~~ae~m~~---------------~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 87 NGKKIYIIYGIEKLNK---------------QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred CCCEEEEeccHhhhCH---------------HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 2457999999998865 567999999988 6677888888888899999999998 45666666
No 275
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.28 E-value=4.3e-06 Score=87.37 Aligned_cols=265 Identities=16% Similarity=0.145 Sum_probs=138.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH-HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCC---Ccce-
Q 012655 156 GMWESLIYESGLKQRLLHYAASAL-MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY---PQCQ- 230 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~-~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~---~~~~- 230 (459)
.++-++.|.+.+|..++-.+-.-. .... +...+...-+|+|.|.||+|||-++++.++-+....+... ..++
T Consensus 342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~---eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGL 418 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILLSLFGGVHKSAG---EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGL 418 (764)
T ss_pred hhCccccchHHHHhhHHHHHhCCccccCC---CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccc
Confidence 445566777777776654332100 0111 1111222346999999999999999999998754321100 0000
Q ss_pred EEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh-
Q 012655 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL- 309 (459)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l- 309 (459)
.+.+--.+-...|.-+.+..+ + ....|-.|||+|++..+- ..+++..|++-
T Consensus 419 TaaVvkD~esgdf~iEAGALm----------L---ADnGICCIDEFDKMd~~d---------------qvAihEAMEQQt 470 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALM----------L---ADNGICCIDEFDKMDVKD---------------QVAIHEAMEQQT 470 (764)
T ss_pred eEEEEecCCCCceeeecCcEE----------E---ccCceEEechhcccChHh---------------HHHHHHHHHhhe
Confidence 001111111111222222111 0 133677899999885522 23444444431
Q ss_pred ---cC-------CCCEEEEEecCCCCc-------------ccHHHhccCCeEE-EeCCCCHHHHHHHHHHHHHHHHHhcc
Q 012655 310 ---KS-------SPNVIILTTSNITAA-------------IDIAFVDRADIKA-YVGPPTLQARYEILRSCLQELIRTGI 365 (459)
Q Consensus 310 ---~~-------~~~viIi~Ttn~~~~-------------ld~al~~R~~~~i-~~~~P~~~~r~~Il~~~l~~~~~~~~ 365 (459)
.+ +.+.-||+++|+..- ++.++++|||..+ -++.|++..-+.|-++.+.....-+.
T Consensus 471 ISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~ 550 (764)
T KOG0480|consen 471 ISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDD 550 (764)
T ss_pred ehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccc
Confidence 12 234567778886543 5788999999766 56999999999998888876321111
Q ss_pred cc-CCccccCCcccchHHHhhcCCchhHH-hhhh-hhHHHHHHHH-----HHHHccCCChHHHhchHHHH--HHhhcCCC
Q 012655 366 IS-NFQDCDQSMLPNFSILKEKLSNPDIQ-EADR-SQHFYKQLLE-----AAEACEGLSGRSLRKLPFLA--HAALANPN 435 (459)
Q Consensus 366 ~~-~~~~~~~~~l~~~~~~~~~~~~~~i~-~~~~-~~~~~~~L~~-----la~~~~G~Sgr~L~~L~~~a--~a~~~~~~ 435 (459)
.. .........+..|...+..+ .|.+. ++.. .......|+. ..+-+-+.+-|+|..|+.++ .|...-..
T Consensus 551 ~~~~~~~~~~e~vrkYi~yAR~~-~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~d 629 (764)
T KOG0480|consen 551 ATERVCVYTLEQVRKYIRYARNF-KPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRD 629 (764)
T ss_pred cccccccccHHHHHHHHHHHHhc-CccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhh
Confidence 00 00000111122333333322 12111 1110 0011111111 11113366789999999988 55567789
Q ss_pred CCCHHHHHHHHHHHHHH
Q 012655 436 GCDPSKFLLTVIDTARK 452 (459)
Q Consensus 436 ~it~~d~~~Al~~~~~~ 452 (459)
.+|.+++.+|.+-..+.
T Consensus 630 evt~~~v~ea~eLlk~S 646 (764)
T KOG0480|consen 630 EVTKEDVEEAVELLKKS 646 (764)
T ss_pred hccHHHHHHHHHHHHhh
Confidence 99999999998765543
No 276
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.28 E-value=1.6e-06 Score=87.78 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=32.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
+.+..|..+.|.||+|||||||+++||+... +..+.+.+++.
T Consensus 25 ~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-------p~~G~I~i~g~ 66 (353)
T TIGR03265 25 LSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-------QTAGTIYQGGR 66 (353)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-------CCceEEEECCE
Confidence 5566789999999999999999999999873 34444555543
No 277
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.27 E-value=1.2e-05 Score=77.25 Aligned_cols=95 Identities=20% Similarity=0.026 Sum_probs=59.9
Q ss_pred CCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHH
Q 012655 324 TAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYK 403 (459)
Q Consensus 324 ~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 403 (459)
|.-++..|++|. .++...+++.++..+||+..+.+.- . .+ ...
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEd---v----------~m-----------------------~~~ 381 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEED---V----------EM-----------------------NPD 381 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhc---c----------cc-----------------------CHH
Confidence 345788899998 7888889999999999999887730 0 00 001
Q ss_pred HHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHhh
Q 012655 404 QLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKERS 455 (459)
Q Consensus 404 ~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~~ 455 (459)
.+..+......-|-|.--.|...| .+.......+..+|+..+.+-+....++
T Consensus 382 A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~Rs 435 (454)
T KOG2680|consen 382 ALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKRS 435 (454)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhhh
Confidence 122333333334555555565555 3444566677888888888777665543
No 278
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=5.4e-07 Score=88.14 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=27.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 566779999999999999999999999987
No 279
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=1.6e-06 Score=87.91 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=33.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|||||||+++||+... +..+.+.+++..
T Consensus 25 l~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-------p~~G~I~~~g~~ 67 (356)
T PRK11650 25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLER-------ITSGEIWIGGRV 67 (356)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-------CCceEEEECCEE
Confidence 5666789999999999999999999999873 344445555543
No 280
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.26 E-value=1e-06 Score=81.32 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++...
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999763
No 281
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.26 E-value=4.6e-06 Score=75.28 Aligned_cols=31 Identities=42% Similarity=0.612 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.+++.+.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5667799999999999999999999999874
No 282
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.26 E-value=5.4e-06 Score=77.38 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++++++.+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5567789999999999999999999999863
No 283
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.25 E-value=6.9e-06 Score=78.97 Aligned_cols=129 Identities=19% Similarity=0.347 Sum_probs=68.8
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcce-EEEEccc------ccccc--------ccchh-hH---H
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ-LVEVNAH------SLFSK--------WFSES-GK---L 250 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~-~i~i~~~------~l~~~--------~~~e~-~~---~ 250 (459)
.+.+|..++|.||+|+|||||++.+++.+..... +.. ++.+... ++... ..+++ .. .
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f----dv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~ 87 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHP----EVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQV 87 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhccccccC----CeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHH
Confidence 3566889999999999999999999998864310 111 2221111 01100 01111 11 2
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhh-------ccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCC
Q 012655 251 VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKA-------ALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (459)
Q Consensus 251 v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~-------~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~ 323 (459)
...+...+..+. ......++++||+.++...... .+++|++........+++..-..+.+.+.+.++.|...
T Consensus 88 ~~~~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~ 166 (249)
T cd01128 88 AEMVLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALV 166 (249)
T ss_pred HHHHHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehee
Confidence 234444444433 3356789999999998765432 23333332222222333333223334566777766554
No 284
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=1.9e-06 Score=87.17 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|||||||+++||+...
T Consensus 27 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 5666789999999999999999999999873
No 285
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.25 E-value=9.9e-07 Score=83.04 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5566789999999999999999999999873
No 286
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.24 E-value=4.1e-06 Score=80.03 Aligned_cols=112 Identities=17% Similarity=0.239 Sum_probs=73.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHH-----------
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQK----------- 257 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~----------- 257 (459)
|.+..|+.+.|.|.+||||||++|.+.+... |..+-+.+++.++......+..+.+.++++.
T Consensus 34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~-------pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ry 106 (268)
T COG4608 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEE-------PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRY 106 (268)
T ss_pred EEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-------CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcC
Confidence 7788899999999999999999999999884 4556677887765432212222233333332
Q ss_pred --------------HHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC-CCEEEEEecC
Q 012655 258 --------------IQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS-PNVIILTTSN 322 (459)
Q Consensus 258 --------------~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~-~~viIi~Ttn 322 (459)
++.+ .-.|.+++.||..+... ..+..++++.|..++.. +...++.||+
T Consensus 107 PhelSGGQrQRi~IARAL---al~P~liV~DEpvSaLD--------------vSiqaqIlnLL~dlq~~~~lt~lFIsHD 169 (268)
T COG4608 107 PHELSGGQRQRIGIARAL---ALNPKLIVADEPVSALD--------------VSVQAQILNLLKDLQEELGLTYLFISHD 169 (268)
T ss_pred CcccCchhhhhHHHHHHH---hhCCcEEEecCchhhcc--------------hhHHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 1111 13678899999765543 34556666666666443 5677888887
Q ss_pred CC
Q 012655 323 IT 324 (459)
Q Consensus 323 ~~ 324 (459)
..
T Consensus 170 L~ 171 (268)
T COG4608 170 LS 171 (268)
T ss_pred HH
Confidence 53
No 287
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.24 E-value=1.9e-06 Score=80.60 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=27.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++.+++.+
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 556678999999999999999999999976
No 288
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.24 E-value=3.3e-07 Score=92.92 Aligned_cols=43 Identities=16% Similarity=0.419 Sum_probs=34.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|||||||+++|++... +..+.+.+++.+
T Consensus 14 ~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-------p~~G~I~i~G~~ 56 (363)
T TIGR01186 14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-------PTAGQIFIDGEN 56 (363)
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC-------CCceEEEECCEE
Confidence 5677799999999999999999999999883 344445555543
No 289
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.24 E-value=9.5e-07 Score=90.73 Aligned_cols=31 Identities=39% Similarity=0.558 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||||+|||||+|.|++.+.
T Consensus 24 ~~i~~Geiv~liGpNGaGKSTLLk~LaGll~ 54 (402)
T PRK09536 24 LSVREGSLVGLVGPNGAGKTTLLRAINGTLT 54 (402)
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 5667799999999999999999999999873
No 290
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.23 E-value=8e-06 Score=76.13 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=24.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~ 217 (459)
+.+..++.++|+||||+||||+++.++..
T Consensus 24 ~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 24 INLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 33455678999999999999999999943
No 291
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.23 E-value=2.2e-06 Score=87.48 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|||||||+++||+...
T Consensus 35 l~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 35 LTINNGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5566789999999999999999999999873
No 292
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.22 E-value=1.5e-05 Score=84.00 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=85.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHH-----------HHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQE-----------MVE 263 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~-----------~~~ 263 (459)
..++|.|++|||||++|+++..... .....++.++|..+...+ ....+|..... .+.
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~------~~~~~~i~i~c~~~~~~~------~~~~lfg~~~g~~~~~~~~~~g~~~ 229 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSP------RAKAPFIALNMAAIPKDL------IESELFGHEKGAFTGANTIRQGRFE 229 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCC------CCCCCeEeeeCCCCCHHH------HHHHhcCCCCCCCCCCCcCCCCCee
Confidence 4499999999999999999988653 245667999998763221 11122221100 011
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--C-------CCCEEEEEecCCC-------Ccc
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNIT-------AAI 327 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~--~-------~~~viIi~Ttn~~-------~~l 327 (459)
......+||||++.+.. ..+..|+..++.-. . ..++-||+|++.. ..+
T Consensus 230 -~a~~Gtl~l~~i~~l~~---------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~ 293 (469)
T PRK10923 230 -QADGGTLFLDEIGDMPL---------------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKF 293 (469)
T ss_pred -ECCCCEEEEeccccCCH---------------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCc
Confidence 12346799999998765 44556666665321 1 1235677777643 235
Q ss_pred cHHHhccC-CeEEEeCCCCH--HHHHHHHHHHHHHHH
Q 012655 328 DIAFVDRA-DIKAYVGPPTL--QARYEILRSCLQELI 361 (459)
Q Consensus 328 d~al~~R~-~~~i~~~~P~~--~~r~~Il~~~l~~~~ 361 (459)
...+..|+ ...+.+|+..+ ++...++.+++.+..
T Consensus 294 ~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~ 330 (469)
T PRK10923 294 REDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAA 330 (469)
T ss_pred hHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHH
Confidence 56677777 46666666554 455667777777653
No 293
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.22 E-value=5e-06 Score=82.52 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=27.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 14 ~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567779999999999999999999999987
No 294
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.22 E-value=2.4e-06 Score=86.71 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=27.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|||||||+++||+..
T Consensus 26 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 26 LEIEAGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 556678999999999999999999999976
No 295
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=1.2e-06 Score=86.07 Aligned_cols=31 Identities=35% Similarity=0.416 Sum_probs=28.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5677799999999999999999999999873
No 296
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.22 E-value=6.4e-06 Score=76.66 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=27.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++.+++..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred eEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566779999999999999999999999974
No 297
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=1.3e-06 Score=85.76 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 28 FHVKQGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567779999999999999999999999987
No 298
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.21 E-value=5.6e-06 Score=77.49 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=36.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|+.+.+.||+|||||||.|.+.+.+ .|..+-|.+.+.++
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll-------~P~~GeI~i~G~~i 72 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLL-------RPDKGEILIDGEDI 72 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccC-------CCCCCeEEEcCcch
Confidence 567779999999999999999999999998 45556677766554
No 299
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.21 E-value=6.9e-06 Score=76.69 Aligned_cols=162 Identities=19% Similarity=0.225 Sum_probs=88.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccccc---chhhHHHHHHHHHH-------
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF---SESGKLVAKLFQKI------- 258 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~---~e~~~~v~~~f~~~------- 258 (459)
+.|+.|..|.|.||+|+|||||.|++++... +..+.+.+++.++....- ....+.+..+|+..
T Consensus 25 l~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-------~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~s 97 (258)
T COG3638 25 LEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-------PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLS 97 (258)
T ss_pred EEeCCCcEEEEECCCCCcHHHHHHHHhcccC-------CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccH
Confidence 5677799999999999999999999999664 344457777765543221 11223334444421
Q ss_pred -HHHHH---------------hc-ccchhhhhh---h--hHhHHHhhhhccCCCC---------------------C--C
Q 012655 259 -QEMVE---------------EE-NNLVFVLID---E--VESLAAARKAALSGSE---------------------P--S 293 (459)
Q Consensus 259 -~~~~~---------------~~-~~~~illID---E--id~l~~~r~~~ls~~e---------------------~--~ 293 (459)
.+.+. .. ..-....+| . +...+.+|.+.|||++ | +
T Consensus 98 v~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvas 177 (258)
T COG3638 98 VLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVAS 177 (258)
T ss_pred HHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccc
Confidence 00000 00 000111122 2 3334567778888884 2 2
Q ss_pred chHHHHHHHHHHHHhhcCC-CCEEEEEecCCCCcc---cHHHhccCCeEEEeCCCCHHHHHHHHHHHHH
Q 012655 294 DSIRVVNALLTQMDKLKSS-PNVIILTTSNITAAI---DIAFVDRADIKAYVGPPTLQARYEILRSCLQ 358 (459)
Q Consensus 294 ~~~~~~~~ll~~l~~l~~~-~~viIi~Ttn~~~~l---d~al~~R~~~~i~~~~P~~~~r~~Il~~~l~ 358 (459)
.++.....+++.|.++... +.++|+.-|...-+. +..+--|.+++++-+++++-.. +.+...+.
T Consensus 178 LDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~-~~~~~iYg 245 (258)
T COG3638 178 LDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD-EALDEIYG 245 (258)
T ss_pred cChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH-HHHHHHhc
Confidence 4455555566666666444 445555555432221 3333356678888777776333 33343333
No 300
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.21 E-value=6e-06 Score=78.55 Aligned_cols=45 Identities=33% Similarity=0.454 Sum_probs=38.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (459)
|.|+||..+.+.||||+||||+.|.+.+.+ .|.++.+.+++..-+
T Consensus 45 f~IP~G~ivgflGaNGAGKSTtLKmLTGll-------~p~~G~v~V~G~~Pf 89 (325)
T COG4586 45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLL-------LPTSGKVRVNGKDPF 89 (325)
T ss_pred eecCCCcEEEEEcCCCCcchhhHHHHhCcc-------ccCCCeEEecCcCcc
Confidence 778899999999999999999999999988 456667888876543
No 301
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.20 E-value=9.7e-06 Score=78.87 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=28.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 45 ~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6677899999999999999999999999874
No 302
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.20 E-value=1.6e-06 Score=88.14 Aligned_cols=263 Identities=14% Similarity=0.145 Sum_probs=134.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc--
Q 012655 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH-- 237 (459)
Q Consensus 160 ~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~-- 237 (459)
.+.|.+++|+.|+-.+........ -+-..|.-.-+|+|.|.||..||-|++.+.+......+.-..++.=+-+.+.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~--~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVm 420 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSP--GDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVM 420 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCC--CCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhh
Confidence 466778888888766543111110 0112233345699999999999999999998764332110000000111111
Q ss_pred --cccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHH-hhc----
Q 012655 238 --SLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD-KLK---- 310 (459)
Q Consensus 238 --~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~-~l~---- 310 (459)
.+.+...-+.+..+- ....|-.|||+|++...- ...+.+++.+-. .+.
T Consensus 421 kDpvTgEM~LEGGALVL-------------AD~GICCIDEfDKM~e~D------------RtAIHEVMEQQTISIaKAGI 475 (721)
T KOG0482|consen 421 KDPVTGEMVLEGGALVL-------------ADGGICCIDEFDKMDESD------------RTAIHEVMEQQTISIAKAGI 475 (721)
T ss_pred cCCCCCeeEeccceEEE-------------ccCceEeehhhhhhhhhh------------hHHHHHHHHhhhhhhhhhcc
Confidence 111111112221110 133677899999986632 222333332210 111
Q ss_pred ---CCCCEEEEEecCCCCc-------------ccHHHhccCCeEEEe-CCCCHHHHHHHHHHHHHHHHHhcc-ccCCccc
Q 012655 311 ---SSPNVIILTTSNITAA-------------IDIAFVDRADIKAYV-GPPTLQARYEILRSCLQELIRTGI-ISNFQDC 372 (459)
Q Consensus 311 ---~~~~viIi~Ttn~~~~-------------ld~al~~R~~~~i~~-~~P~~~~r~~Il~~~l~~~~~~~~-~~~~~~~ 372 (459)
-+.++-|+++.|+... |+.|+++|||..+-+ +.|+.+.-..+.++..--.....- -..+...
T Consensus 476 ~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl 555 (721)
T KOG0482|consen 476 NTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPL 555 (721)
T ss_pred ccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCC
Confidence 1234667777775432 588999999987755 778877666666665543221100 0000001
Q ss_pred cCCcccchHHHhhcCCc---hhHHhhhhhhHHHHHHHHHHHHc--cC-CChHHHhchHHHH--HHhhcCCCCCCHHHHHH
Q 012655 373 DQSMLPNFSILKEKLSN---PDIQEADRSQHFYKQLLEAAEAC--EG-LSGRSLRKLPFLA--HAALANPNGCDPSKFLL 444 (459)
Q Consensus 373 ~~~~l~~~~~~~~~~~~---~~i~~~~~~~~~~~~L~~la~~~--~G-~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~ 444 (459)
+--.+..+..++..++. ..+.+.. ......++.=|+.. .+ .|+|.|-.++.++ +|...-...+..+|+.+
T Consensus 556 ~~~~mR~yI~~ak~~~P~vp~~l~dyi--~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~E 633 (721)
T KOG0482|consen 556 DPNLMRRYISLAKRKNPVVPEALADYI--TGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNE 633 (721)
T ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHH--HHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 11112234444444432 2332221 11122233333222 22 3889999998887 45556678899999999
Q ss_pred HHHHHHH
Q 012655 445 TVIDTAR 451 (459)
Q Consensus 445 Al~~~~~ 451 (459)
|++-..-
T Consensus 634 ALRLme~ 640 (721)
T KOG0482|consen 634 ALRLMEM 640 (721)
T ss_pred HHHHHHh
Confidence 9976643
No 303
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.20 E-value=7e-07 Score=87.09 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 30 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 30 FNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5566799999999999999999999999873
No 304
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=9.3e-06 Score=73.67 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.+.||+|||||||.+.+|+...
T Consensus 26 L~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 26 LTIASGELVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred eeecCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence 5567799999999999999999999999873
No 305
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.20 E-value=9.9e-06 Score=75.41 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=23.1
Q ss_pred ccccCC-cEEEEecCCCChHHHHHHHHH
Q 012655 189 FLVSWN-RIVLLHGPPGTGKTSLCKALA 215 (459)
Q Consensus 189 ~~i~~~-~~vLL~GPpGtGKTtLaralA 215 (459)
+.+..+ +.++|.||||+|||||+|.++
T Consensus 22 ~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 22 IQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEECCCceEEEEECCCCCChHHHHHHHH
Confidence 445556 579999999999999999998
No 306
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.20 E-value=4.8e-06 Score=85.94 Aligned_cols=165 Identities=21% Similarity=0.245 Sum_probs=98.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.+..++|....-+++.+.+.. ..... -.|||+|++||||-.+||+|-+.... .+.++|.+||
T Consensus 139 ~~~~liG~S~am~~l~~~i~k---vA~s~---------a~VLI~GESGtGKElvAr~IH~~S~R------~~~PFVavNc 200 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK---VAPSD---------ASVLITGESGTGKELVARAIHQASPR------AKGPFIAVNC 200 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH---HhCCC---------CCEEEECCCCCcHHHHHHHHHhhCcc------cCCCceeeec
Confidence 355677776666666555432 22222 33999999999999999999987653 3466799999
Q ss_pred ccccccccchhhHHHHHHHHHHHH-----------HHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQE-----------MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~-----------~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (459)
..+-...+ -..+|..-+. .++ ......||||||..+.. .++..||..
T Consensus 201 aAip~~l~------ESELFGhekGAFTGA~~~r~G~fE-~A~GGTLfLDEI~~mpl---------------~~Q~kLLRv 258 (464)
T COG2204 201 AAIPENLL------ESELFGHEKGAFTGAITRRIGRFE-QANGGTLFLDEIGEMPL---------------ELQVKLLRV 258 (464)
T ss_pred ccCCHHHH------HHHhhcccccCcCCcccccCccee-EcCCceEEeeccccCCH---------------HHHHHHHHH
Confidence 87642210 1112221111 111 13457899999987643 566677777
Q ss_pred HHhhc--C-------CCCEEEEEecCCCCc-------ccHHHhccCCeEEEeCCCCHHHH----HHHHHHHHHHHHH
Q 012655 306 MDKLK--S-------SPNVIILTTSNITAA-------IDIAFVDRADIKAYVGPPTLQAR----YEILRSCLQELIR 362 (459)
Q Consensus 306 l~~l~--~-------~~~viIi~Ttn~~~~-------ld~al~~R~~~~i~~~~P~~~~r----~~Il~~~l~~~~~ 362 (459)
+..-. + +-.+-||++||..-. +-+.+.-|+ .++.+..|...+| ..++++++++...
T Consensus 259 Lqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~ 334 (464)
T COG2204 259 LQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAA 334 (464)
T ss_pred HHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHH
Confidence 76321 1 124778888886422 334444566 4445555555444 4566677766543
No 307
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.19 E-value=8.1e-06 Score=75.10 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=42.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccccc--chhhHHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF--SESGKLVAKLFQ 256 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~--~e~~~~v~~~f~ 256 (459)
+.|..+....|.||+||||||++|++-+.-..- ....-.+-+.+++.++++..+ .+-++.++.+|+
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~--~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQ 95 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI--PGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQ 95 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHhhcccC--cCceEEEEEEECCeeccCCCCCHHHHHHHheeecc
Confidence 456668999999999999999999998765321 001112446677777665422 233455566665
No 308
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.18 E-value=2e-06 Score=81.21 Aligned_cols=31 Identities=35% Similarity=0.362 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5566789999999999999999999999873
No 309
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.18 E-value=6.9e-06 Score=77.10 Aligned_cols=31 Identities=35% Similarity=0.590 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567789999999999999999999999863
No 310
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=3e-06 Score=80.72 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=28.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999873
No 311
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.17 E-value=1.4e-05 Score=80.73 Aligned_cols=125 Identities=20% Similarity=0.309 Sum_probs=67.8
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE-EEcccc---------------ccccccchhhHHH---
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV-EVNAHS---------------LFSKWFSESGKLV--- 251 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i-~i~~~~---------------l~~~~~~e~~~~v--- 251 (459)
+..|...+|+||+|+|||||++.|++...... ++...+ .+.... +.+.+-......+
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~nh----FDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a 241 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITTNH----PEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVA 241 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHhhc----CCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHH
Confidence 45577899999999999999999999886531 122212 111111 1111111122222
Q ss_pred HHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhh-ccCCCC-CC--chHHHHHHHHHHHH---hhcCCCCEEEEEe
Q 012655 252 AKLFQKIQEMVEEENNLVFVLIDEVESLAAARKA-ALSGSE-PS--DSIRVVNALLTQMD---KLKSSPNVIILTT 320 (459)
Q Consensus 252 ~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~-~ls~~e-~~--~~~~~~~~ll~~l~---~l~~~~~viIi~T 320 (459)
..++..++.+. .....++|||||+.++...... .++.++ ++ ....++...-..+. .+...+.+.+|+|
T Consensus 242 ~~~ie~Ae~~~-e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T 316 (416)
T PRK09376 242 EMVIEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIAT 316 (416)
T ss_pred HHHHHHHHHHH-HcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEE
Confidence 24455555554 3456789999999999876542 222222 11 22334333323333 2334466667766
No 312
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.17 E-value=7.7e-06 Score=77.01 Aligned_cols=30 Identities=40% Similarity=0.519 Sum_probs=27.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 556678999999999999999999999976
No 313
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.17 E-value=2e-06 Score=80.53 Aligned_cols=31 Identities=32% Similarity=0.577 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5566789999999999999999999999873
No 314
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.16 E-value=9.7e-06 Score=76.27 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.5
Q ss_pred cEEEEecCCCChHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~ 216 (459)
+.++|+||||+||||++|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7799999999999999999984
No 315
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.16 E-value=3.6e-06 Score=79.50 Aligned_cols=30 Identities=43% Similarity=0.555 Sum_probs=27.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 556678999999999999999999999976
No 316
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.16 E-value=9.8e-06 Score=76.03 Aligned_cols=30 Identities=33% Similarity=0.550 Sum_probs=27.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++.|++.+
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 556678999999999999999999999986
No 317
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.16 E-value=2e-05 Score=71.95 Aligned_cols=44 Identities=30% Similarity=0.392 Sum_probs=35.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
|.+..|+.+-|.||||+||||++|.||..+ .|..+.+.+++-+.
T Consensus 23 F~ae~Gei~GlLG~NGAGKTT~LRmiatlL-------~P~~G~v~idg~d~ 66 (245)
T COG4555 23 FEAEEGEITGLLGENGAGKTTLLRMIATLL-------IPDSGKVTIDGVDT 66 (245)
T ss_pred EEeccceEEEEEcCCCCCchhHHHHHHHhc-------cCCCceEEEeeccc
Confidence 556678999999999999999999999998 45556676766543
No 318
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.16 E-value=4.6e-05 Score=80.63 Aligned_cols=56 Identities=29% Similarity=0.471 Sum_probs=38.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.++|.....-.+.+..++.... . +.. ..+.++|+||+||||||+++.||++++..+
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~--~--~~~-----~~~iLlLtGP~G~GKtttv~~La~elg~~v 73 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMF--S--GSS-----PKRILLLTGPSGCGKTTTVKVLAKELGFEV 73 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHh--c--cCC-----CcceEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 3556655554455666655322 1 211 146789999999999999999999998765
No 319
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.15 E-value=1.2e-05 Score=74.76 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++...
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5667799999999999999999999999863
No 320
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.15 E-value=4.6e-06 Score=82.80 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=27.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 25 l~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 25 FTIARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567779999999999999999999999977
No 321
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=9.4e-06 Score=76.19 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=27.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566779999999999999999999999976
No 322
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.15 E-value=1.5e-05 Score=74.25 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.+++.+.
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5667789999999999999999999999873
No 323
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.14 E-value=1.1e-05 Score=76.14 Aligned_cols=30 Identities=33% Similarity=0.472 Sum_probs=27.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567779999999999999999999999976
No 324
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.14 E-value=9.1e-07 Score=87.20 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=28.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 27 l~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~ 57 (288)
T PRK13643 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ 57 (288)
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 5677799999999999999999999999873
No 325
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.14 E-value=8e-06 Score=84.58 Aligned_cols=164 Identities=20% Similarity=0.251 Sum_probs=97.3
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEE
Q 012655 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (459)
...|++|++....-.++++.+. .+... ...|||.|.+||||..+|++|-+... ..+.+||.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~ak---r~A~t---------dstVLi~GESGTGKElfA~~IH~~S~------R~~~PFIai 302 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAK---RIAKT---------DSTVLILGESGTGKELFARAIHNLSP------RANGPFIAI 302 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHH---hhcCC---------CCcEEEecCCCccHHHHHHHHHhcCc------ccCCCeEEE
Confidence 3568899988776655555543 23322 24499999999999999999998875 345778999
Q ss_pred ccccccc-----cccchhhHH--------HHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 235 NAHSLFS-----KWFSESGKL--------VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 235 ~~~~l~~-----~~~~e~~~~--------v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
||..+-. ..||-.... -..+|+. .+..-+|||||..+.. ..+..
T Consensus 303 NCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~--------A~gGTLFLDEIgempl---------------~LQaK 359 (560)
T COG3829 303 NCAAIPETLLESELFGYEKGAFTGASKGGKPGLFEL--------ANGGTLFLDEIGEMPL---------------PLQAK 359 (560)
T ss_pred ecccCCHHHHHHHHhCcCCccccccccCCCCcceee--------ccCCeEEehhhccCCH---------------HHHHH
Confidence 9976532 122211100 1122222 2446799999976643 45666
Q ss_pred HHHHHHhhc---------CCCCEEEEEecCCCCc-------ccHHHhccCCeEEEeCCCCHHHHH----HHHHHHHHHH
Q 012655 302 LLTQMDKLK---------SSPNVIILTTSNITAA-------IDIAFVDRADIKAYVGPPTLQARY----EILRSCLQEL 360 (459)
Q Consensus 302 ll~~l~~l~---------~~~~viIi~Ttn~~~~-------ld~al~~R~~~~i~~~~P~~~~r~----~Il~~~l~~~ 360 (459)
||..|+.-. ..-.+-||++||..-. +-..+--|. .++.+..|...+|. .+...++.+.
T Consensus 360 LLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~ 437 (560)
T COG3829 360 LLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKF 437 (560)
T ss_pred HHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHH
Confidence 777776321 1124889999996421 122233454 33445555555554 4444555543
No 326
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.14 E-value=4e-06 Score=85.51 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++...
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5666789999999999999999999999873
No 327
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.14 E-value=1.1e-05 Score=76.62 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5566789999999999999999999999863
No 328
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.13 E-value=1.2e-05 Score=74.95 Aligned_cols=30 Identities=33% Similarity=0.528 Sum_probs=27.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++.|++.+
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 21 FTLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 566779999999999999999999999987
No 329
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=5.3e-06 Score=76.73 Aligned_cols=30 Identities=33% Similarity=0.383 Sum_probs=26.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++.+++..
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566678999999999999999999999854
No 330
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.13 E-value=2.5e-06 Score=83.29 Aligned_cols=142 Identities=22% Similarity=0.308 Sum_probs=78.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcc-eEEEEccccccccccchhhHHHHHHHHHHHHHHH---------
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQC-QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVE--------- 263 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~-~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~--------- 263 (459)
++.+||+||+|||||++++..-+.+.. .. -...++.+.. .+...+..+.+. .+.
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~-------~~~~~~~~~~s~~------Tts~~~q~~ie~---~l~k~~~~~~gP 96 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDS-------DKYLVITINFSAQ------TTSNQLQKIIES---KLEKRRGRVYGP 96 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTT-------CCEEEEEEES-TT------HHHHHHHHCCCT---TECECTTEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCc-------cccceeEeeccCC------CCHHHHHHHHhh---cEEcCCCCCCCC
Confidence 567999999999999999987765531 11 1122333221 111222211111 000
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh---cC--------CCCEEEEEecCCCC---cccH
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL---KS--------SPNVIILTTSNITA---AIDI 329 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l---~~--------~~~viIi~Ttn~~~---~ld~ 329 (459)
......|+||||+..-.... .++...+ +++.++-.. .+ =.++.++++.++.. .+++
T Consensus 97 ~~~k~lv~fiDDlN~p~~d~---------ygtq~~i-ElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~ 166 (272)
T PF12775_consen 97 PGGKKLVLFIDDLNMPQPDK---------YGTQPPI-ELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISP 166 (272)
T ss_dssp ESSSEEEEEEETTT-S---T---------TS--HHH-HHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHH
T ss_pred CCCcEEEEEecccCCCCCCC---------CCCcCHH-HHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCCh
Confidence 01244689999987544322 2223333 455544321 11 13577888888643 3688
Q ss_pred HHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Q 012655 330 AFVDRADIKAYVGPPTLQARYEILRSCLQELIR 362 (459)
Q Consensus 330 al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~ 362 (459)
.|++.| .++.++.|+.+....|+..++....+
T Consensus 167 R~~r~f-~i~~~~~p~~~sl~~If~~il~~~l~ 198 (272)
T PF12775_consen 167 RFLRHF-NILNIPYPSDESLNTIFSSILQSHLK 198 (272)
T ss_dssp HHHTTE-EEEE----TCCHHHHHHHHHHHHHTC
T ss_pred HHhhhe-EEEEecCCChHHHHHHHHHHHhhhcc
Confidence 888888 78899999999999999999987654
No 331
>PRK10908 cell division protein FtsE; Provisional
Probab=98.13 E-value=2.2e-06 Score=81.10 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=27.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 566779999999999999999999999987
No 332
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.12 E-value=4.2e-05 Score=89.18 Aligned_cols=29 Identities=41% Similarity=0.673 Sum_probs=25.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.+.+.|+|++|+||||||+++++.+...|
T Consensus 207 ~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 207 VRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 67899999999999999999999886554
No 333
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=5e-06 Score=84.90 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=27.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|||||||+++||+...
T Consensus 40 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 40 LTIYKGEIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5566789999999999999999999999873
No 334
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.11 E-value=4.1e-06 Score=81.16 Aligned_cols=31 Identities=35% Similarity=0.610 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667789999999999999999999999863
No 335
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.11 E-value=5.5e-06 Score=83.93 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|||||||+++|++...
T Consensus 23 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 23 LDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5566789999999999999999999999873
No 336
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.11 E-value=1.4e-05 Score=75.19 Aligned_cols=31 Identities=39% Similarity=0.566 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++...
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999863
No 337
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.10 E-value=1.4e-05 Score=76.40 Aligned_cols=30 Identities=37% Similarity=0.550 Sum_probs=27.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 556779999999999999999999999876
No 338
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.10 E-value=1.5e-05 Score=77.04 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999863
No 339
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.10 E-value=2e-05 Score=74.96 Aligned_cols=130 Identities=22% Similarity=0.254 Sum_probs=72.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
+.+-.+.||.|||||.++|.+|+.+|..+ +.+||.+-++ ...+.++|.-+.. ..+.+.+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~---------~vfnc~~~~~------~~~l~ril~G~~~------~GaW~cf 90 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFV---------VVFNCSEQMD------YQSLSRILKGLAQ------SGAWLCF 90 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--E---------EEEETTSSS-------HHHHHHHHHHHHH------HT-EEEE
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeE---------EEeccccccc------HHHHHHHHHHHhh------cCchhhh
Confidence 45678999999999999999999998776 8889877543 2445555554433 4577899
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-----------CCCCEEEEEecCCC----CcccHHHhccCCeE
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-----------SSPNVIILTTSNIT----AAIDIAFVDRADIK 338 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-----------~~~~viIi~Ttn~~----~~ld~al~~R~~~~ 338 (459)
||++++....-+.++ ..+..+...+..-. -+.+.-++.|.|+. ..++..++.-| +.
T Consensus 91 defnrl~~~vLS~i~--------~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rp 161 (231)
T PF12774_consen 91 DEFNRLSEEVLSVIS--------QQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RP 161 (231)
T ss_dssp ETCCCSSHHHHHHHH--------HHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EE
T ss_pred hhhhhhhHHHHHHHH--------HHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-he
Confidence 999887553321110 11111222221100 11234466666743 34677777777 88
Q ss_pred EEeCCCCHHHHHHHH
Q 012655 339 AYVGPPTLQARYEIL 353 (459)
Q Consensus 339 i~~~~P~~~~r~~Il 353 (459)
+.+-.||.....+++
T Consensus 162 vam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 162 VAMMVPDLSLIAEIL 176 (231)
T ss_dssp EE--S--HHHHHHHH
T ss_pred eEEeCCCHHHHHHHH
Confidence 889999976655553
No 340
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=2.8e-06 Score=83.44 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 28 FSIPRGSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 5667789999999999999999999999873
No 341
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=3.4e-06 Score=81.55 Aligned_cols=31 Identities=35% Similarity=0.581 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5567789999999999999999999999763
No 342
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.10 E-value=1.1e-05 Score=75.56 Aligned_cols=31 Identities=35% Similarity=0.624 Sum_probs=28.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.+++...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999863
No 343
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.10 E-value=4.8e-06 Score=69.46 Aligned_cols=26 Identities=42% Similarity=0.783 Sum_probs=22.8
Q ss_pred EEEecCCCChHHHHHHHHHHHhcccc
Q 012655 197 VLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
|.|+||||+|||++++.|+..+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999999886543
No 344
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.10 E-value=6.5e-06 Score=77.16 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=25.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..| .+.|.||+|+|||||++++++.+.
T Consensus 21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred EEEcCC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 455567 899999999999999999999763
No 345
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.10 E-value=1.7e-05 Score=73.87 Aligned_cols=31 Identities=39% Similarity=0.546 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 5566789999999999999999999999874
No 346
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.09 E-value=1.4e-05 Score=75.69 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=26.6
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..|..+.|.||+|+|||||++++++...
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455689999999999999999999999763
No 347
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.08 E-value=3.1e-06 Score=82.67 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5667789999999999999999999999873
No 348
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.08 E-value=1.6e-05 Score=73.63 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++++++...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 21 ITFLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5566789999999999999999999999873
No 349
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.08 E-value=3.8e-06 Score=77.80 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=27.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++.|++.+
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 556678999999999999999999999987
No 350
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=2.4e-06 Score=83.88 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 31 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 31 LEVKKGEFLVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999998873
No 351
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=3.1e-06 Score=82.98 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=28.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 25 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 25 FIAPRNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6677799999999999999999999999873
No 352
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.07 E-value=5.7e-06 Score=80.05 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5566799999999999999999999999873
No 353
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.07 E-value=1.8e-05 Score=73.92 Aligned_cols=120 Identities=21% Similarity=0.345 Sum_probs=63.4
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhh-------------------HHHHH
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESG-------------------KLVAK 253 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~-------------------~~v~~ 253 (459)
.|..++|+||||||||++|..++..... .+...++++...+....+.+.. .....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~------~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR------QGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 4889999999999999999998876532 1234466666541110000000 01111
Q ss_pred HHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCC
Q 012655 254 LFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (459)
Q Consensus 254 ~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~ 323 (459)
.+..+...+.. ..+.+|+||-+..+..... ..+.....+.+..++..|.++....++.++.|+..
T Consensus 85 ~~~~l~~~~~~-~~~~lvVIDSis~l~~~~~----~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~ 149 (209)
T TIGR02237 85 AIQKTSKFIDR-DSASLVVVDSFTALYRLEL----SDDRISRNRELARQLTLLLSLARKKNLAVVITNQV 149 (209)
T ss_pred HHHHHHHHHhh-cCccEEEEeCcHHHhHHHh----CCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEccc
Confidence 23333332222 3678999999998754211 01111112233444455555544556666666443
No 354
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.07 E-value=5.4e-06 Score=79.21 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=27.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 24 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 566779999999999999999999999987
No 355
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.07 E-value=1.5e-05 Score=83.42 Aligned_cols=138 Identities=21% Similarity=0.260 Sum_probs=81.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHH-----------HHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQE-----------MVE 263 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~-----------~~~ 263 (459)
..++|+|++||||+++|+++..... .....++.++|..+...+. -..+|..... .+.
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~------~~~~~~v~v~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~ 230 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSD------RKDKRFVAINCAAIPENLL------ESELFGYEKGAFTGAVKQTLGKIE 230 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCC------cCCCCeEEEECCCCChHHH------HHHhcCCCCCCcCCCccCCCCcee
Confidence 3499999999999999999988754 2345678999987632211 1122221100 011
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--C-------CCCEEEEEecCCC-------Ccc
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNIT-------AAI 327 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~--~-------~~~viIi~Ttn~~-------~~l 327 (459)
......|||||++.+.. ..+..|+..++.-. + ..++.+|+|++.. ..+
T Consensus 231 -~a~~gtl~l~~i~~l~~---------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~ 294 (445)
T TIGR02915 231 -YAHGGTLFLDEIGDLPL---------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTF 294 (445)
T ss_pred -ECCCCEEEEechhhCCH---------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCc
Confidence 13457899999998865 44566666665321 1 1246777777654 234
Q ss_pred cHHHhccC-CeEEEeCCCCH--HHHHHHHHHHHHHH
Q 012655 328 DIAFVDRA-DIKAYVGPPTL--QARYEILRSCLQEL 360 (459)
Q Consensus 328 d~al~~R~-~~~i~~~~P~~--~~r~~Il~~~l~~~ 360 (459)
.+.+..|+ ...+.+|+... ++...+++.++.++
T Consensus 295 ~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~ 330 (445)
T TIGR02915 295 REDLFYRIAEISITIPPLRSRDGDAVLLANAFLERF 330 (445)
T ss_pred cHHHHHHhccceecCCCchhchhhHHHHHHHHHHHH
Confidence 55565665 24445554433 23344666676665
No 356
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=2.3e-05 Score=76.40 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=28.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 45 ~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 45 LDVREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6677899999999999999999999999873
No 357
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=3.6e-05 Score=75.92 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=84.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccc----cC-CCCcceEEEEc--cccccccccchhhHHHHHHHHHHHHHHHhccc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF----SS-RYPQCQLVEVN--AHSLFSKWFSESGKLVAKLFQKIQEMVEEENN 267 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~----~~-~~~~~~~i~i~--~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~ 267 (459)
...||+|+.|.||+++++.+++.+-... .. ..| ..++.++ +..+ ....++.+.+.+....-..+.
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p-~n~~~~d~~g~~i-------~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELP-ANIILFDIFDKDL-------SKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCC-cceEEeccCCCcC-------CHHHHHHHHHHhccCCcccCC
Confidence 4588999999999999999999983211 00 001 0112222 1110 112333333322211101136
Q ss_pred chhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHH
Q 012655 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQ 347 (459)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~ 347 (459)
..|++||++|.+.. ...|+|++.|+. +...+++|.+++.+..+-+.+++|+ ..+.+.+++.+
T Consensus 91 ~KvvII~~~e~m~~---------------~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~ 152 (299)
T PRK07132 91 KKILIIKNIEKTSN---------------SLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQ 152 (299)
T ss_pred ceEEEEecccccCH---------------HHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHH
Confidence 68999999877643 567899999988 4455555555556678888899998 78889999888
Q ss_pred HHHHHHHH
Q 012655 348 ARYEILRS 355 (459)
Q Consensus 348 ~r~~Il~~ 355 (459)
+..+.+..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 77766654
No 358
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.06 E-value=6.4e-05 Score=79.01 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=85.7
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHH-----------HHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ-----------EMVE 263 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~-----------~~~~ 263 (459)
..+++.|.+||||+++++++..... .....++.++|..+...++ -..+|.... ..+.
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~------~~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~ 225 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSP------RANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRFE 225 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC------CCCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcEE
Confidence 4499999999999999999988653 2345678999987633221 111121100 0011
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--C-------CCCEEEEEecCCCC-------cc
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNITA-------AI 327 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~--~-------~~~viIi~Ttn~~~-------~l 327 (459)
......|||||++.+.. .....|+..++.-. . ..++-||+|++..- .+
T Consensus 226 -~a~~gtl~l~ei~~l~~---------------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f 289 (463)
T TIGR01818 226 -QADGGTLFLDEIGDMPL---------------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKF 289 (463)
T ss_pred -ECCCCeEEEEchhhCCH---------------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCc
Confidence 12357899999998765 34556666665321 0 12355666666442 34
Q ss_pred cHHHhccCC-eEEEeCCCC--HHHHHHHHHHHHHHHH
Q 012655 328 DIAFVDRAD-IKAYVGPPT--LQARYEILRSCLQELI 361 (459)
Q Consensus 328 d~al~~R~~-~~i~~~~P~--~~~r~~Il~~~l~~~~ 361 (459)
.+.+..|+. ..+.+|+.. .++...++..++.+..
T Consensus 290 ~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~ 326 (463)
T TIGR01818 290 REDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAA 326 (463)
T ss_pred HHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHH
Confidence 556666764 577777777 4677788888887753
No 359
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.06 E-value=1.8e-05 Score=78.45 Aligned_cols=30 Identities=37% Similarity=0.523 Sum_probs=27.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++.+++.+
T Consensus 23 ~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 23 FEAQKGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 566779999999999999999999999976
No 360
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.06 E-value=6.6e-05 Score=66.17 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=23.8
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
-.++++|+||+||||++..++..+...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 459999999999999999999988544
No 361
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.05 E-value=2.1e-05 Score=76.24 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 33 l~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5566789999999999999999999999873
No 362
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.05 E-value=3.5e-06 Score=79.03 Aligned_cols=44 Identities=30% Similarity=0.366 Sum_probs=36.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..+.|.||||+||||+.+.+.+.+ .|.++.+.+++.++
T Consensus 25 l~v~~Gei~~LIGPNGAGKTTlfNlitG~~-------~P~~G~v~~~G~~i 68 (250)
T COG0411 25 LEVRPGEIVGLIGPNGAGKTTLFNLITGFY-------KPSSGTVIFRGRDI 68 (250)
T ss_pred EEEcCCeEEEEECCCCCCceeeeeeecccc-------cCCCceEEECCccc
Confidence 667779999999999999999999999887 45566677776654
No 363
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.05 E-value=1.2e-05 Score=74.96 Aligned_cols=31 Identities=39% Similarity=0.589 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 22 FTLNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999873
No 364
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.05 E-value=1.6e-05 Score=74.47 Aligned_cols=30 Identities=33% Similarity=0.477 Sum_probs=27.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 556778999999999999999999999976
No 365
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=4.1e-06 Score=81.96 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=28.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 23 LVIKKGEYIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677799999999999999999999999863
No 366
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.03 E-value=3e-05 Score=72.43 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.1
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..++.++|.||+|+||||+++.++...
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998654
No 367
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.03 E-value=2.2e-05 Score=79.51 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=25.9
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
..+++++||||+|+|||+|+-.....+..
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 34799999999999999999999998864
No 368
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.03 E-value=3.3e-06 Score=83.87 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 28 l~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 28 VEINQGEFIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5667799999999999999999999999873
No 369
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.02 E-value=1.5e-05 Score=84.99 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=27.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 32 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 556678999999999999999999999987
No 370
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.02 E-value=7.9e-06 Score=79.22 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=36.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (459)
+.+..|+...|.|-+|||||||+|++-+.. .|..+-+.+++.++.
T Consensus 49 l~v~~GeIfViMGLSGSGKSTLvR~~NrLi-------ept~G~ilv~g~di~ 93 (386)
T COG4175 49 LDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-------EPTRGEILVDGKDIA 93 (386)
T ss_pred eeecCCeEEEEEecCCCCHHHHHHHHhccC-------CCCCceEEECCcchh
Confidence 667789999999999999999999999887 345555777776654
No 371
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.02 E-value=9.6e-06 Score=87.84 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=34.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|+.+.|.||+|+|||||++.+++.+. |..+.+.+++.+
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~-------p~~G~I~i~g~~ 406 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYD-------IDEGEILLDGHD 406 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhccC-------CCCceEEECCEE
Confidence 5567799999999999999999999999883 444556666644
No 372
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=4.4e-06 Score=79.91 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=27.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 567779999999999999999999999976
No 373
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.01 E-value=7.1e-06 Score=79.84 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5666799999999999999999999999873
No 374
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.01 E-value=1.1e-05 Score=76.75 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999873
No 375
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.01 E-value=5.7e-06 Score=76.17 Aligned_cols=62 Identities=24% Similarity=0.410 Sum_probs=50.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQK 257 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~ 257 (459)
+.|+.+..|.+.|.||+|||||++++|+.+ .+.++.|.+++.++...........+..+||.
T Consensus 27 L~I~~g~FvtViGsNGAGKSTlln~iaG~l-------~~t~G~I~Idg~dVtk~~~~~RA~~larVfQd 88 (263)
T COG1101 27 LEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-------KPTSGQILIDGVDVTKKSVAKRANLLARVFQD 88 (263)
T ss_pred eeecCCceEEEEcCCCccHHHHHHHhhCcc-------ccCCceEEECceecccCCHHHHhhHHHHHhcc
Confidence 567778999999999999999999999998 45667789998887665555555667777774
No 376
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=5.4e-06 Score=81.60 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=33.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||+++|++.+. +..+.+.+++..
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-------p~~G~i~~~g~~ 70 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNINALLK-------PTTGTVTVDDIT 70 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCcEEEECCEE
Confidence 5677799999999999999999999999873 344445555544
No 377
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=2.4e-06 Score=83.99 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=28.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 27 ~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 27 INIKKGEVTAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5667799999999999999999999999873
No 378
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=4.9e-06 Score=81.53 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++...
T Consensus 28 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (277)
T PRK13642 28 FSITKGEWVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5566799999999999999999999999873
No 379
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.00 E-value=1.4e-05 Score=76.87 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=28.2
Q ss_pred CCccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 187 NPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 187 ~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..+..|..+.|.||+|+|||||+++|++.+.
T Consensus 18 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 18 EGGSISESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred ecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 344556689999999999999999999999874
No 380
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.00 E-value=3.8e-06 Score=85.22 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=27.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 18 l~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 18 FTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5566789999999999999999999999873
No 381
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.00 E-value=2.7e-05 Score=73.43 Aligned_cols=31 Identities=39% Similarity=0.483 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++++++...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999998863
No 382
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.00 E-value=2.9e-05 Score=74.27 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5567799999999999999999999999763
No 383
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.99 E-value=3.9e-06 Score=85.95 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=58.5
Q ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHH-H-------------------HHhcCCC-------CccccCCcEEEEecC
Q 012655 150 PAKEFDGMWESLIYESGLKQRLLHYAASAL-M-------------------FAEKGVN-------PFLVSWNRIVLLHGP 202 (459)
Q Consensus 150 P~~~~~~~~~~li~~~~~k~~L~~~~~~~~-~-------------------~~~~g~~-------~~~i~~~~~vLL~GP 202 (459)
|-...=+.|.+++.....-++|.+.+...- . +...|.. .|.+..|..+-+.||
T Consensus 291 Pid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGP 370 (580)
T COG4618 291 PIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGP 370 (580)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECC
Confidence 544444679988888777777777765311 0 1111111 166778999999999
Q ss_pred CCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc
Q 012655 203 PGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (459)
Q Consensus 203 pGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (459)
+|+|||||+|.+.+.+ .|..+.+.+++.++.
T Consensus 371 SgSGKSTLaR~lvG~w-------~p~~G~VRLDga~l~ 401 (580)
T COG4618 371 SGSGKSTLARLLVGIW-------PPTSGSVRLDGADLR 401 (580)
T ss_pred CCccHHHHHHHHHccc-------ccCCCcEEecchhhh
Confidence 9999999999999988 445566778877653
No 384
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.99 E-value=3.1e-05 Score=74.01 Aligned_cols=31 Identities=39% Similarity=0.530 Sum_probs=28.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 42 ~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 42 FTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5677799999999999999999999999863
No 385
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.99 E-value=2.3e-05 Score=72.75 Aligned_cols=30 Identities=37% Similarity=0.571 Sum_probs=27.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++.+++.+
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 21 FTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 556779999999999999999999999986
No 386
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.99 E-value=6.4e-06 Score=83.54 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 19 l~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5566789999999999999999999999873
No 387
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.99 E-value=1.2e-05 Score=84.37 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 45 fsI~~GEivgIiGpNGSGKSTLLkiLaGLl~ 75 (549)
T PRK13545 45 FEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM 75 (549)
T ss_pred EEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 5566799999999999999999999999873
No 388
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=2.6e-05 Score=78.78 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 l~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 26 LHIPAGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5677799999999999999999999999873
No 389
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.99 E-value=0.00021 Score=69.99 Aligned_cols=169 Identities=17% Similarity=0.226 Sum_probs=87.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc
Q 012655 161 LIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (459)
Q Consensus 161 li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (459)
+.|..+-.+.+.++++.+....+ +..+++.||.|+|||++........ ..+ ..+.-++.+|+.-..
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gE----------snsviiigprgsgkT~li~~~Ls~~-q~~---~E~~l~v~Lng~~~~ 91 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGE----------SNSVIIIGPRGSGKTILIDTRLSDI-QEN---GENFLLVRLNGELQT 91 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcC----------CCceEEEccCCCCceEeeHHHHhhH-Hhc---CCeEEEEEECccchh
Confidence 45555566667777766555443 3459999999999999876654441 111 222334555554332
Q ss_pred cccc-ch-hh-------------HHHHHHHHHHHHHHHh----cccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 241 SKWF-SE-SG-------------KLVAKLFQKIQEMVEE----ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 241 ~~~~-~e-~~-------------~~v~~~f~~~~~~~~~----~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
.+.. .+ +. ......+.+.-..+.. .+.++|.++||+|-+.+-. -+.-
T Consensus 92 dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~--------------rQtl 157 (408)
T KOG2228|consen 92 DKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS--------------RQTL 157 (408)
T ss_pred hHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch--------------hhHH
Confidence 1110 00 00 0011122222222221 2344667778999776521 1122
Q ss_pred HHHHHHhhc-CCCCEEEEEecCCCCc---ccHHHhccCCeE-EEeCC-CCHHHHHHHHHHHH
Q 012655 302 LLTQMDKLK-SSPNVIILTTSNITAA---IDIAFVDRADIK-AYVGP-PTLQARYEILRSCL 357 (459)
Q Consensus 302 ll~~l~~l~-~~~~viIi~Ttn~~~~---ld~al~~R~~~~-i~~~~-P~~~~r~~Il~~~l 357 (459)
+.+.+|-.. ....+.|++-|.+-+. +.....+||... |++.+ .+..+..++++..+
T Consensus 158 lYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 158 LYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 334444332 1233555555444444 467788999754 66644 45566677777766
No 390
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.98 E-value=1.9e-05 Score=79.71 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=33.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||+++|++... |..+.+.+++.+
T Consensus 26 l~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-------p~~G~I~i~G~~ 68 (343)
T TIGR02314 26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLER-------PTSGSVIVDGQD 68 (343)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCceEEEECCEE
Confidence 5677799999999999999999999999873 334445555443
No 391
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=7.1e-06 Score=80.29 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 l~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (275)
T PRK13639 23 FKAEKGEMVALLGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999763
No 392
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.98 E-value=2.3e-05 Score=74.15 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.+++.+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5566789999999999999999999999863
No 393
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.98 E-value=2.9e-05 Score=73.56 Aligned_cols=30 Identities=33% Similarity=0.417 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++++++..
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 667789999999999999999999999976
No 394
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=6e-06 Score=81.49 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++.|++.+
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLL 57 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 667779999999999999999999999987
No 395
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.97 E-value=1.7e-05 Score=74.51 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5667799999999999999999999999863
No 396
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.97 E-value=9.5e-06 Score=78.15 Aligned_cols=30 Identities=37% Similarity=0.469 Sum_probs=27.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++++++..
T Consensus 17 l~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 17 AEVRAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 667789999999999999999999999875
No 397
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.97 E-value=4.2e-05 Score=72.18 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=27.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++..
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 566778999999999999999999999976
No 398
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=5.4e-05 Score=74.19 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=81.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhccccc------CCCCcceEEEEccccccccccch-----hhHHHHHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRYPQCQLVEVNAHSLFSKWFSE-----SGKLVAKLFQKIQEMVE 263 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~~~~~~i~i~~~~l~~~~~~e-----~~~~v~~~f~~~~~~~~ 263 (459)
..+||+|| .||+++|+.+|+.+-..-. .....|..+.-+.|.-+ .++.. .-..++.+...+... .
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~-~~i~p~~~~I~idqIR~l~~~~~~~-p 100 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDV-TVIEPQGQVIKTDTIRELVKNFSQS-G 100 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCe-eeecCCCCcCCHHHHHHHHHHHhhC-c
Confidence 45899996 6899999999998743210 00111222211111111 01111 113344443333321 1
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCC
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGP 343 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~ 343 (459)
..+...|++||++|.+.. ...|+||+.++. +..++++|.+|+.++.+-+.+++|+ ..+.|+.
T Consensus 101 ~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHV---------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred ccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 123557999999998865 567999999988 5556777777777888888999999 6777765
Q ss_pred CCHHHHHHHH
Q 012655 344 PTLQARYEIL 353 (459)
Q Consensus 344 P~~~~r~~Il 353 (459)
+.+...+++
T Consensus 163 -~~~~~~~~L 171 (290)
T PRK07276 163 -NEAYLIQLL 171 (290)
T ss_pred -cHHHHHHHH
Confidence 554444444
No 399
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=5.6e-06 Score=80.85 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5566789999999999999999999999873
No 400
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=5e-06 Score=79.40 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=27.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++++++.+
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 566779999999999999999999999986
No 401
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.96 E-value=0.00011 Score=77.03 Aligned_cols=138 Identities=20% Similarity=0.286 Sum_probs=80.7
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHH-----------HHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ-----------EMVE 263 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~-----------~~~~ 263 (459)
..++++|++||||+++|+++..... .....++.++|..+...+. -..+|.... ..+.
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~------~~~~~~~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~ 234 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSR------RAKGPFIKVNCAALPESLL------ESELFGHEKGAFTGAQTLRQGLFE 234 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCC------CCCCCeEEEECCCCCHHHH------HHHhcCCCCCCCCCCCCCCCCceE
Confidence 4599999999999999999987543 2345678999987632211 111222100 0011
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--C-------CCCEEEEEecCCCC-------cc
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNITA-------AI 327 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~--~-------~~~viIi~Ttn~~~-------~l 327 (459)
.....+|||||++.+.. ..+..|+..++.-. . ..++.||+|||..- .+
T Consensus 235 -~a~~gtl~ld~i~~l~~---------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~ 298 (457)
T PRK11361 235 -RANEGTLLLDEIGEMPL---------------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 (457)
T ss_pred -ECCCCEEEEechhhCCH---------------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 12447899999998865 34566776665321 1 12467788777542 34
Q ss_pred cHHHhccCCeEEEeCCCCHHHH----HHHHHHHHHHHH
Q 012655 328 DIAFVDRADIKAYVGPPTLQAR----YEILRSCLQELI 361 (459)
Q Consensus 328 d~al~~R~~~~i~~~~P~~~~r----~~Il~~~l~~~~ 361 (459)
...+..|+. .+.+..|...+| ..++..++.+..
T Consensus 299 ~~~l~~~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~ 335 (457)
T PRK11361 299 REDLFYRLN-VIHLILPPLRDRREDISLLANHFLQKFS 335 (457)
T ss_pred hHHHHHHhc-cceecCCChhhchhhHHHHHHHHHHHHH
Confidence 555556652 233444444444 345666666653
No 402
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.96 E-value=1.2e-05 Score=85.17 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=28.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++++++.+.
T Consensus 24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 24 LTLNAGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5667799999999999999999999999873
No 403
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.96 E-value=1.9e-05 Score=73.98 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5566799999999999999999999999873
No 404
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.96 E-value=4.7e-05 Score=75.92 Aligned_cols=61 Identities=21% Similarity=0.383 Sum_probs=44.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ 256 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~ 256 (459)
..|..|..|+|.|.|||||||+|+.+-+.. .|+++-|.+|+..+..+...+-++.+..+|.
T Consensus 344 l~ikrGelvFliG~NGsGKST~~~LLtGL~-------~PqsG~I~ldg~pV~~e~ledYR~LfSavFs 404 (546)
T COG4615 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLY-------QPQSGEILLDGKPVSAEQLEDYRKLFSAVFS 404 (546)
T ss_pred eEEecCcEEEEECCCCCcHHHHHHHHhccc-------CCCCCceeECCccCCCCCHHHHHHHHHHHhh
Confidence 557778999999999999999999999987 4666678888866544333333344444444
No 405
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.95 E-value=5.3e-06 Score=82.95 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999873
No 406
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.95 E-value=5e-05 Score=72.28 Aligned_cols=128 Identities=20% Similarity=0.336 Sum_probs=69.7
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccc-ccc----------------------hhhH
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK-WFS----------------------ESGK 249 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~-~~~----------------------e~~~ 249 (459)
.|..+.|+||||||||++|..++.....+-.....+.+.++++...-+.. .+. .+..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCCHH
Confidence 38899999999999999999998654221100011345677776552210 000 0011
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCC-CCchHHHHHHHHHHHHhhcCCCCEEEEEecCC
Q 012655 250 LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSE-PSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (459)
Q Consensus 250 ~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e-~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~ 323 (459)
.+..++..+...+.....+.+|+||-+..+..... .+.. .....+.+..++..|..+....++.|+.|+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~---~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~ 169 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTALFRAEF---DGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQV 169 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccE
Confidence 22333344444444433778999999987753211 1110 11223455666677766655556666666543
No 407
>PRK15115 response regulator GlrR; Provisional
Probab=97.95 E-value=0.00013 Score=76.17 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=79.4
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHH----------HHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEM----------VEE 264 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~----------~~~ 264 (459)
..++|+|++|||||++|+++..... ..+..++.++|..+...+. -..+|...+.. ...
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~------r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~ 225 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASP------RASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQ 225 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcC------CCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEE
Confidence 4499999999999999999988764 2345679999987632211 11222221110 001
Q ss_pred cccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--C-------CCCEEEEEecCCCC-------ccc
Q 012655 265 ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNITA-------AID 328 (459)
Q Consensus 265 ~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~--~-------~~~viIi~Ttn~~~-------~ld 328 (459)
......|||||++.|.. ..+..|+..++.-. . ..++.+|+|++..- .+.
T Consensus 226 ~a~~gtl~l~~i~~l~~---------------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (444)
T PRK15115 226 AAEGGTLFLDEIGDMPA---------------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFR 290 (444)
T ss_pred ECCCCEEEEEccccCCH---------------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCcc
Confidence 12447899999998865 34556666665321 0 12567777777531 122
Q ss_pred HHHhccCCeEEEeCCCCHHHHH----HHHHHHHHHHH
Q 012655 329 IAFVDRADIKAYVGPPTLQARY----EILRSCLQELI 361 (459)
Q Consensus 329 ~al~~R~~~~i~~~~P~~~~r~----~Il~~~l~~~~ 361 (459)
..+..|+ ..+.+..|...+|. .+++.++.++.
T Consensus 291 ~~l~~~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~ 326 (444)
T PRK15115 291 EDLYYRL-NVVSLKIPALAERTEDIPLLANHLLRQAA 326 (444)
T ss_pred HHHHHhh-ceeeecCCChHhccccHHHHHHHHHHHHH
Confidence 3333444 22344455555553 45666766653
No 408
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.94 E-value=7.2e-05 Score=71.35 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
|..++++|+||+|||+++..++...
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 8889999999999999999997653
No 409
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=7e-06 Score=79.89 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=27.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++...
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5566789999999999999999999999763
No 410
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.93 E-value=2.9e-06 Score=77.18 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=91.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchh--------------------h
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSES--------------------G 248 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~--------------------~ 248 (459)
+.+..|..|-|.||+|+||||....+.+.. .++.+-+.+++.++.......- .
T Consensus 25 l~v~~GEiVGLLGPNGAGKTT~Fymi~Glv-------~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~ 97 (243)
T COG1137 25 LEVNSGEIVGLLGPNGAGKTTTFYMIVGLV-------RPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVE 97 (243)
T ss_pred EEEcCCcEEEEECCCCCCceeEEEEEEEEE-------ecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHH
Confidence 567779999999999999999877666655 4666778888877654322110 0
Q ss_pred HHHHHHHHHHHHHHH--hcccchhhhhhh--hHhHHHhhhhccCCCCC-----------------------CchHHHHHH
Q 012655 249 KLVAKLFQKIQEMVE--EENNLVFVLIDE--VESLAAARKAALSGSEP-----------------------SDSIRVVNA 301 (459)
Q Consensus 249 ~~v~~~f~~~~~~~~--~~~~~~illIDE--id~l~~~r~~~ls~~e~-----------------------~~~~~~~~~ 301 (459)
.++..+++....-.. ......--+++| +.++..+...++||+|. +-++-.+..
T Consensus 98 dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~d 177 (243)
T COG1137 98 DNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVID 177 (243)
T ss_pred HHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHH
Confidence 111111111110000 000112234555 45566666677788751 122344555
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccCCeEEEeCCCCHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRADIKAYVGPPTLQA 348 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~~~~i~~~~P~~~~ 348 (459)
+.+.+..++..+-.|+|+-||..+.+ |.+.+-+.+.++.-+.|++-.
T Consensus 178 Iq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 178 IQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHh
Confidence 66666667778889999999988876 455555556777777776543
No 411
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.91 E-value=5.1e-05 Score=71.76 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.7
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHH
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~ 216 (459)
..++.++|.||+|+|||++++.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999998
No 412
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.91 E-value=2.1e-05 Score=86.13 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=36.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.|..|+.+.|.|++|||||||+|.+.+.. .|..+.+.+++.++
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-------~p~~G~I~~dg~dl 537 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-------KPQQGRILLDGVDL 537 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCC-------CCCCceEEECCEeH
Confidence 557779999999999999999999999987 45566677777654
No 413
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5.8e-05 Score=68.21 Aligned_cols=42 Identities=31% Similarity=0.463 Sum_probs=34.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
|.+..|..+.+.||||+|||||.|.||+.+. |.++-|.++..
T Consensus 23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-------p~~G~v~~~~~ 64 (209)
T COG4133 23 FTLNAGEALQITGPNGAGKTTLLRILAGLLR-------PDAGEVYWQGE 64 (209)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHcccC-------CCCCeEEecCC
Confidence 5667799999999999999999999999983 45555666643
No 414
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.91 E-value=1e-05 Score=76.59 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=27.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||++++++.+
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 556678999999999999999999999987
No 415
>PRK07261 topology modulation protein; Provisional
Probab=97.90 E-value=6.2e-05 Score=68.29 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.|+++|+||+|||||++.|++.++.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~ 28 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPV 28 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 389999999999999999999887554
No 416
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.90 E-value=4e-05 Score=81.52 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++++++.+.
T Consensus 25 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 25 LNVYPGRVMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999873
No 417
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.89 E-value=1.6e-05 Score=81.24 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=28.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 45 f~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~ 75 (382)
T TIGR03415 45 LDIEEGEICVLMGLSGSGKSSLLRAVNGLNP 75 (382)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6778899999999999999999999999874
No 418
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.89 E-value=3.6e-05 Score=81.67 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 19 ~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 49 (491)
T PRK10982 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQ 49 (491)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5667789999999999999999999999873
No 419
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.89 E-value=1.6e-05 Score=88.25 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=35.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+.+|..+.|.||+|+|||||++.+++.+. |..+.+.+++.++
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-------p~~G~I~idg~~i 543 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-------PWSGEILFDGIPR 543 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCcEEEECCEeH
Confidence 5677799999999999999999999999873 4455566666543
No 420
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.88 E-value=8.1e-05 Score=68.39 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=18.7
Q ss_pred EEEecCCCChHHHHHHHHHH
Q 012655 197 VLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~ 216 (459)
++|+||||+||||++|.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999994
No 421
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.87 E-value=1.2e-05 Score=77.93 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=36.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (459)
+.|..|..+-+.|.+|+|||||.|++-..- .|..+-+.+++.++.
T Consensus 27 L~I~~GeI~GIIG~SGAGKSTLiR~iN~Le-------~PtsG~v~v~G~di~ 71 (339)
T COG1135 27 LEIPKGEIFGIIGYSGAGKSTLLRLINLLE-------RPTSGSVFVDGQDLT 71 (339)
T ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhccC-------CCCCceEEEcCEecc
Confidence 567789999999999999999999997654 456666888885553
No 422
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=3.6e-05 Score=73.75 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=27.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 556678999999999999999999999986
No 423
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.87 E-value=2.4e-05 Score=84.55 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=34.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..++|.|++|+|||||++.+++.+. +..+.+.+++.+
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-------~~~G~I~i~g~~ 395 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYE-------PDSGQILLDGHD 395 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccC-------CCCCeEEECCEe
Confidence 5567799999999999999999999999883 445556666543
No 424
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.86 E-value=2.9e-05 Score=84.01 Aligned_cols=42 Identities=29% Similarity=0.421 Sum_probs=33.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
+.+.+|..++|.||+|+|||||++.+++.+. |..+.+.+++.
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-------p~~G~I~i~g~ 402 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYD-------PQSGRILLDGV 402 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccC-------CCCCEEEECCE
Confidence 6677799999999999999999999999873 33444566553
No 425
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.86 E-value=4.5e-05 Score=81.12 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||||+|||||+++|++.+
T Consensus 274 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 274 FSVRAGEIVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHcCCC
Confidence 667789999999999999999999999887
No 426
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.86 E-value=0.00011 Score=66.99 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=19.6
Q ss_pred EEEecCCCChHHHHHHHHHHHh
Q 012655 197 VLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l 218 (459)
++++||||||||+++..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7999999999999999887764
No 427
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.85 E-value=7.2e-05 Score=70.83 Aligned_cols=39 Identities=28% Similarity=0.574 Sum_probs=29.6
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
.|..++|+||||+|||++|..++...... +...++++..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~------~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN------GKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEECC
Confidence 38889999999999999999998766321 2344666655
No 428
>PRK04296 thymidine kinase; Provisional
Probab=97.85 E-value=7.4e-05 Score=69.01 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
|..++++||+|+||||++..++..+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5678999999999999998888876
No 429
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.84 E-value=2e-05 Score=87.09 Aligned_cols=44 Identities=25% Similarity=0.405 Sum_probs=35.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+.+|..+.|.||+|||||||++.+++.+. |..+.+.+++.++
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-------p~~G~I~idg~~i 517 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFET-------PESGSVFYDGQDL 517 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCCEEEECCEEc
Confidence 6677899999999999999999999999873 4555577776543
No 430
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.84 E-value=6.5e-05 Score=67.56 Aligned_cols=44 Identities=27% Similarity=0.346 Sum_probs=36.1
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (459)
.+..++.+-+.||+|+|||||.+.||+-. .|..+-+.+++.+..
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-------~P~~G~i~i~g~d~t 64 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFE-------TPASGEILINGVDHT 64 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhcc-------CCCCceEEEcCeecC
Confidence 35568899999999999999999999987 466667888876654
No 431
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.84 E-value=8.5e-05 Score=73.82 Aligned_cols=125 Identities=15% Similarity=0.236 Sum_probs=65.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccccc----c--------hhhHHHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF----S--------ESGKLVAKLFQKIQEM 261 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~----~--------e~~~~v~~~f~~~~~~ 261 (459)
|+.++|+||||||||+||..++..... .+...++++......... + .........+..+..+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~------~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK------AGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 889999999999999998887766532 123345555543221100 0 0000111222223222
Q ss_pred HHhcccchhhhhhhhHhHHHhhhh--ccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCC
Q 012655 262 VEEENNLVFVLIDEVESLAAARKA--ALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITA 325 (459)
Q Consensus 262 ~~~~~~~~illIDEid~l~~~r~~--~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~ 325 (459)
+ ....+.+++||-+..+.....- .+.........+.+..++..|..+....++.+|.|....+
T Consensus 129 i-~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~ 193 (321)
T TIGR02012 129 V-RSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIRE 193 (321)
T ss_pred h-hccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEeccee
Confidence 2 2346789999999888753211 0100111123355556666666655556666666644333
No 432
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.83 E-value=1.8e-05 Score=87.48 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=34.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+.+|..+.|.||+|+|||||++.+++.+. |..+.+.+++.+
T Consensus 486 l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~-------p~~G~I~idg~~ 528 (694)
T TIGR03375 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-------PTEGSVLLDGVD 528 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCceEEECCEE
Confidence 5677799999999999999999999999873 444556666543
No 433
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.82 E-value=2.2e-05 Score=82.62 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=44.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.|++++|.++++.++.+++..+..-- +. .++.++|+||||+|||+|+++|++.+.
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl--~~------~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGL--EE------KKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhc--CC------CCceEEEecCCCCCchHHHHHHHHHHH
Confidence 58889999999999999986543211 11 257899999999999999999999885
No 434
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.82 E-value=5.1e-06 Score=83.44 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=34.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..+.|.|++|+|||||+++|++.+.... ...+.+.+++.++
T Consensus 37 l~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~----~~sG~I~~~G~~i 83 (330)
T PRK09473 37 FSLRAGETLGIVGESGSGKSQTAFALMGLLAANG----RIGGSATFNGREI 83 (330)
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC----CCCeEEEECCEEC
Confidence 6677799999999999999999999999884310 0144456665543
No 435
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.82 E-value=2.3e-05 Score=84.98 Aligned_cols=30 Identities=43% Similarity=0.580 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+.+|+.+.|.||+|+|||||++.+++.+
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 667789999999999999999999999976
No 436
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.82 E-value=3e-05 Score=72.40 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=27.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++..
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 556678999999999999999999999986
No 437
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.82 E-value=8.4e-05 Score=75.43 Aligned_cols=91 Identities=23% Similarity=0.341 Sum_probs=53.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc---c-----------ccccccchhh----HH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH---S-----------LFSKWFSESG----KL 250 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~---~-----------l~~~~~~e~~----~~ 250 (459)
+.+..|..++|.||+|+|||||++.+++.+..... ...+ ++.+... + +....+++.. ..
T Consensus 163 ~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhf--dv~v-~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~v 239 (415)
T TIGR00767 163 APIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHP--EVEL-IVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQV 239 (415)
T ss_pred EEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCC--ceEE-EEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHH
Confidence 34566889999999999999999999998754310 0111 2222211 0 0111112221 11
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHhHHHhh
Q 012655 251 VAKLFQKIQEMVEEENNLVFVLIDEVESLAAAR 283 (459)
Q Consensus 251 v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r 283 (459)
...+.+.++.+. .....++|+|||+.+++...
T Consensus 240 a~~v~e~Ae~~~-~~GkdVVLlIDEitR~arAq 271 (415)
T TIGR00767 240 AEMVIEKAKRLV-EHKKDVVILLDSITRLARAY 271 (415)
T ss_pred HHHHHHHHHHHH-HcCCCeEEEEEChhHHHHHH
Confidence 233444444444 33566899999999997754
No 438
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=5.8e-05 Score=75.72 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=28.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|||||||+++|++.+.
T Consensus 28 l~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 6777899999999999999999999999874
No 439
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=5.6e-05 Score=80.48 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667789999999999999999999999874
No 440
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.80 E-value=6e-06 Score=86.35 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=35.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
|.+..|..+-|.|++||||||++|+|++.. .|.++.+.+++.+
T Consensus 312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~-------~P~~G~i~~~g~~ 354 (539)
T COG1123 312 FDLREGETLGLVGESGSGKSTLARILAGLL-------PPSSGSIIFDGQD 354 (539)
T ss_pred eEecCCCEEEEECCCCCCHHHHHHHHhCCC-------CCCCceEEEeCcc
Confidence 677789999999999999999999999988 3455566666654
No 441
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.79 E-value=2.1e-05 Score=66.62 Aligned_cols=27 Identities=41% Similarity=0.955 Sum_probs=23.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.|+|.|||||||||+|+.||+.++.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~ 27 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPV 27 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 389999999999999999999987543
No 442
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.79 E-value=4e-05 Score=82.81 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+.+|..+.|.||+|+|||||++.+++...
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5567799999999999999999999999873
No 443
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.78 E-value=6.6e-05 Score=67.52 Aligned_cols=44 Identities=30% Similarity=0.485 Sum_probs=35.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
|.+..+..+.+.|.+|+|||||||.+|+.. .|.++-+.+|.+.+
T Consensus 34 FtL~~~QTlaiIG~NGSGKSTLakMlaGmi-------~PTsG~il~n~~~L 77 (267)
T COG4167 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMI-------EPTSGEILINDHPL 77 (267)
T ss_pred EEecCCcEEEEEccCCCcHhHHHHHHhccc-------CCCCceEEECCccc
Confidence 566678889999999999999999999988 45555577777655
No 444
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.78 E-value=7.1e-05 Score=68.93 Aligned_cols=44 Identities=34% Similarity=0.527 Sum_probs=35.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+.+|+.+.|.||||+|||||.|++++++. |..+.+.+++..+
T Consensus 22 l~~~pGev~ailGPNGAGKSTlLk~LsGel~-------p~~G~v~~~g~~l 65 (259)
T COG4559 22 LDLRPGEVLAILGPNGAGKSTLLKALSGELS-------PDSGEVTLNGVPL 65 (259)
T ss_pred eeccCCcEEEEECCCCccHHHHHHHhhCccC-------CCCCeEeeCCcCh
Confidence 4556689999999999999999999999984 4555666776654
No 445
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=5.5e-05 Score=80.54 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=28.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 283 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 313 (506)
T PRK13549 283 FSLRRGEILGIAGLVGAGRTELVQCLFGAYP 313 (506)
T ss_pred eEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 6677899999999999999999999998863
No 446
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.78 E-value=0.00011 Score=69.01 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=36.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
|.+..|+.+-|.||||+||||+.|.|.+.+. +..+-|.+++..+
T Consensus 23 f~v~~G~i~GllG~NGAGKTTtfRmILglle-------~~~G~I~~~g~~~ 66 (300)
T COG4152 23 FEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-------PTEGEITWNGGPL 66 (300)
T ss_pred eeecCCeEEEeecCCCCCccchHHHHhccCC-------ccCceEEEcCcch
Confidence 5677799999999999999999999999884 4455677777544
No 447
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.78 E-value=3.4e-05 Score=85.57 Aligned_cols=43 Identities=26% Similarity=0.433 Sum_probs=35.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+.+|..+.|.||+|+||||+++.|++.+. |..+.|.+++.+
T Consensus 502 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-------p~~G~I~idg~~ 544 (711)
T TIGR00958 502 FTLHPGEVVALVGPSGSGKSTVAALLQNLYQ-------PTGGQVLLDGVP 544 (711)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccC-------CCCCEEEECCEE
Confidence 6677899999999999999999999999883 444556666544
No 448
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.78 E-value=7.2e-05 Score=70.40 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=26.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.++.+....|+||||+|||||++.++++.
T Consensus 52 W~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 52 WQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred eeecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 445568999999999999999999999987
No 449
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.78 E-value=3.2e-05 Score=85.77 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=34.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+.+|..+.|.||+|+|||||++.+++.+. |..+.+.+++.+
T Consensus 495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~~-------p~~G~I~idg~~ 537 (708)
T TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ-------ARSGEILLNGFS 537 (708)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCC-------CCCcEEEECCEE
Confidence 5677799999999999999999999999873 445556666644
No 450
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.78 E-value=3.6e-05 Score=82.73 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=28.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+.+|..+.|.||+|+|||||++.+++.+.
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999873
No 451
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.77 E-value=4.6e-05 Score=82.71 Aligned_cols=43 Identities=26% Similarity=0.467 Sum_probs=34.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+.+|..+.|.|++|+|||||++.+++... |..+.+.+++.+
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-------p~~G~I~i~g~~ 398 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFD-------PQSGRILIDGTD 398 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCcC-------CCCCEEEECCEE
Confidence 5566799999999999999999999999873 444556666644
No 452
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.77 E-value=0.00019 Score=63.95 Aligned_cols=33 Identities=36% Similarity=0.574 Sum_probs=28.2
Q ss_pred CCCCccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 185 GVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 185 g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
|++ +.+..|..+-|.||+|+|||||...+|+.-
T Consensus 28 ~V~-L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd 60 (228)
T COG4181 28 GVE-LVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60 (228)
T ss_pred cce-EEecCCceEEEEcCCCCcHHhHHHHHhcCC
Confidence 444 567779999999999999999999999864
No 453
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.77 E-value=6.4e-05 Score=79.96 Aligned_cols=30 Identities=33% Similarity=0.440 Sum_probs=27.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 273 l~i~~Ge~~~liG~NGsGKSTLl~~l~G~~ 302 (501)
T PRK10762 273 FTLRKGEILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred EEEcCCcEEEEecCCCCCHHHHHHHHhCCC
Confidence 667779999999999999999999999886
No 454
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.76 E-value=7.5e-05 Score=77.70 Aligned_cols=149 Identities=16% Similarity=0.233 Sum_probs=88.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccc---------------------------
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS--------------------------- 241 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~--------------------------- 241 (459)
+.+..|+.+.|.|.||+|||||+|.|++... |+.+.+.+++....-
T Consensus 29 l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-------p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVa 101 (500)
T COG1129 29 LTVRPGEVHALLGENGAGKSTLMKILSGVYP-------PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVA 101 (500)
T ss_pred eEEeCceEEEEecCCCCCHHHHHHHHhCccc-------CCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHH
Confidence 6677799999999999999999999999873 444555555432210
Q ss_pred --cccchhhH------HHHHHHHHHHHHHHh----------------------------cccchhhhhhhhHhHHHhhhh
Q 012655 242 --KWFSESGK------LVAKLFQKIQEMVEE----------------------------ENNLVFVLIDEVESLAAARKA 285 (459)
Q Consensus 242 --~~~~e~~~------~v~~~f~~~~~~~~~----------------------------~~~~~illIDEid~l~~~r~~ 285 (459)
-+.+.... .-..+...+...+.. .....+|++||--+
T Consensus 102 eNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTa------- 174 (500)
T COG1129 102 ENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTA------- 174 (500)
T ss_pred HHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc-------
Confidence 00000000 012222222222221 11233566666221
Q ss_pred ccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccCCeEEEeCC-CCHHHHHHHHHHHHH
Q 012655 286 ALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRADIKAYVGP-PTLQARYEILRSCLQ 358 (459)
Q Consensus 286 ~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~~~~i~~~~-P~~~~r~~Il~~~l~ 358 (459)
..+..-...|+..+.+++..+..+|+.||+..+.+ |...+-|-+..+.-.+ -..-...++++.+..
T Consensus 175 -------aLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~MvG 244 (500)
T COG1129 175 -------ALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMVG 244 (500)
T ss_pred -------cCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHhhC
Confidence 23456678899999999999999999999876654 3333345555554444 245555666666664
No 455
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.76 E-value=0.00016 Score=68.93 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=19.9
Q ss_pred CCcEEEEecCCCChHHHHHHHHHH
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~ 216 (459)
.+..++|.||||||||+++..++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999754444
No 456
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.75 E-value=5.6e-05 Score=83.61 Aligned_cols=44 Identities=30% Similarity=0.446 Sum_probs=35.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+.+|..+.|.|++|+|||||++.+++... |..+.+.+++.++
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~-------p~~G~I~idg~~i 521 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT-------PQHGQVLVDGVDL 521 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCceEEECCEeh
Confidence 5567799999999999999999999999873 4445566666543
No 457
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.75 E-value=5.5e-05 Score=80.22 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++..
T Consensus 269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred EEEeCCcEEEEecCCCCCHHHHHHHHcCCC
Confidence 567789999999999999999999999876
No 458
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00011 Score=78.60 Aligned_cols=44 Identities=23% Similarity=0.441 Sum_probs=36.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+++.+|+.+.|.||+|+||||++..|-+.. .|.++.|.+++.++
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rfY-------~PtsG~IllDG~~i 532 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRFY-------DPTSGRILLDGVPI 532 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHhc-------CCCCCeEEECCeeh
Confidence 567789999999999999999999998887 45666677777654
No 459
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00034 Score=63.86 Aligned_cols=163 Identities=20% Similarity=0.247 Sum_probs=91.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHH--------HHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQK--------IQE 260 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~--------~~~ 260 (459)
..++.|+..-|.||+|+|||||...+++.++. +.+.+.+++.++.+....+-.+.+.-+-+. ++.
T Consensus 22 l~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-------d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~d 94 (252)
T COG4604 22 LDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK-------DSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRD 94 (252)
T ss_pred eeecCCceeEEECCCCccHHHHHHHHHHhccc-------cCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHH
Confidence 44667888999999999999999999999853 456688888776543222222222222221 111
Q ss_pred HHHh------cc---cchhhhhhh------hHhHHHhhhhccCCCC---------------------CC--chHHHHHHH
Q 012655 261 MVEE------EN---NLVFVLIDE------VESLAAARKAALSGSE---------------------PS--DSIRVVNAL 302 (459)
Q Consensus 261 ~~~~------~~---~~~illIDE------id~l~~~r~~~ls~~e---------------------~~--~~~~~~~~l 302 (459)
++.- .. .-+-..|++ ++.+..+.-..+|||+ |- .+..-.-++
T Consensus 95 Lv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~i 174 (252)
T COG4604 95 LVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQI 174 (252)
T ss_pred HhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHH
Confidence 1110 00 001222332 2334444445566663 21 122222334
Q ss_pred HHHHHhhc-CCCCEEEEEecCCCCcc---cHHHhccCCeEEEeCCCCHHHHHHHHHHHHH
Q 012655 303 LTQMDKLK-SSPNVIILTTSNITAAI---DIAFVDRADIKAYVGPPTLQARYEILRSCLQ 358 (459)
Q Consensus 303 l~~l~~l~-~~~~viIi~Ttn~~~~l---d~al~~R~~~~i~~~~P~~~~r~~Il~~~l~ 358 (459)
+..|.++. .-++.+|+.-|+...+- |..+.-+-+.++.-++|++--..++++..+.
T Consensus 175 Mk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiyd 234 (252)
T COG4604 175 MKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIYD 234 (252)
T ss_pred HHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHHhc
Confidence 45555442 34667777777755432 4434456678888899987776777766655
No 460
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.74 E-value=5.3e-05 Score=82.29 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=36.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+.+|..+.|.|++|+|||||++.+++.+ .|..+.+.+++.++
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-------~p~~G~I~idg~~i 405 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYY-------PLTEGEIRLDGRPL 405 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc-------CCCCceEEECCEEh
Confidence 567779999999999999999999999987 34555677776544
No 461
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.74 E-value=6.3e-05 Score=80.56 Aligned_cols=43 Identities=33% Similarity=0.430 Sum_probs=34.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+.+|..+.|.||+|+|||||++.+++... |..+.+.+++.+
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-------~~~G~I~~~g~~ 385 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVD-------PTEGSIAVNGVP 385 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCcEEEECCEe
Confidence 5677799999999999999999999999873 344445565543
No 462
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.74 E-value=0.00016 Score=68.04 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.|..++|+|+||+|||++|..+|....
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 388899999999999999999998763
No 463
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.74 E-value=7.1e-05 Score=85.22 Aligned_cols=137 Identities=26% Similarity=0.356 Sum_probs=86.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc------ccccc-cchhhHHH---HHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS------LFSKW-FSESGKLV---AKLFQKIQEMVE 263 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~------l~~~~-~~e~~~~v---~~~f~~~~~~~~ 263 (459)
++.++|-|.||.|||+|..++|++.|..+ +.||.++ +++.. .++.+..+ ..-|-.+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kl---------iRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~am---- 1609 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKL---------IRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAM---- 1609 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCce---------EEeeccccchHHHHhCCCCCcccCceeEecccHHHHHh----
Confidence 45699999999999999999999998765 6666543 22221 12211111 11122222
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH--------HH-hhcCCCCEEEEEecCCCCc------cc
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ--------MD-KLKSSPNVIILTTSNITAA------ID 328 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~--------l~-~l~~~~~viIi~Ttn~~~~------ld 328 (459)
.....|++||+.-..... ..-+|+.|.. +| .+.-++++.|+++-|+-.. ++
T Consensus 1610 --r~G~WVlLDEiNLaSQSV------------lEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLP 1675 (4600)
T COG5271 1610 --RDGGWVLLDEINLASQSV------------LEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLP 1675 (4600)
T ss_pred --hcCCEEEeehhhhhHHHH------------HHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCC
Confidence 255789999986433211 2223333332 11 1234678999999997544 79
Q ss_pred HHHhccCCeEEEeCCCCHHHHHHHHHHHHH
Q 012655 329 IAFVDRADIKAYVGPPTLQARYEILRSCLQ 358 (459)
Q Consensus 329 ~al~~R~~~~i~~~~P~~~~r~~Il~~~l~ 358 (459)
..|+.|| .++++...+.+....|...++.
T Consensus 1676 kSF~nRF-svV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1676 KSFLNRF-SVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred HHHhhhh-heEEecccccchHHHHHHhhCC
Confidence 9999999 6777887777777777766554
No 464
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.73 E-value=6.1e-05 Score=77.28 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=78.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
-...+||......++++.+.- ..+. +..|||.|.+||||-.+||+|-+.... ...++|.+||
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~---VA~S---------d~tVLi~GETGtGKElvAraIH~~S~R------~~kPfV~~NC 282 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEV---VAKS---------DSTVLIRGETGTGKELVARAIHQLSPR------RDKPFVKLNC 282 (550)
T ss_pred ccccceecCHHHHHHHHHHHH---HhcC---------CCeEEEecCCCccHHHHHHHHHhhCcc------cCCCceeeec
Confidence 345678877776666666542 1221 345999999999999999999988753 3456699999
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHH----------hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHH
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVE----------EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~----------~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (459)
..+-... .-.++|...+..+. +.....-+|+|||..+.. .++..||..+
T Consensus 283 AAlPesL------lESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL---------------~lQaKLLRvL 341 (550)
T COG3604 283 AALPESL------LESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL---------------ALQAKLLRVL 341 (550)
T ss_pred cccchHH------HHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH---------------HHHHHHHHHH
Confidence 8763211 11222222221111 012346799999976644 3445566665
Q ss_pred Hh--hcC-------CCCEEEEEecCCC
Q 012655 307 DK--LKS-------SPNVIILTTSNIT 324 (459)
Q Consensus 307 ~~--l~~-------~~~viIi~Ttn~~ 324 (459)
+. +.+ +-.+-||++||+.
T Consensus 342 QegEieRvG~~r~ikVDVRiIAATNRD 368 (550)
T COG3604 342 QEGEIERVGGDRTIKVDVRVIAATNRD 368 (550)
T ss_pred hhcceeecCCCceeEEEEEEEeccchh
Confidence 52 111 1137899999974
No 465
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.73 E-value=0.00037 Score=62.40 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=85.4
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHH------------HHHHHH
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVA------------KLFQKI 258 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~------------~~f~~~ 258 (459)
+..|..+-++||+|+|||||..++|+.+. ..+-|.+.+.++-.....+-.+.-. -+|+..
T Consensus 22 v~aGe~~HliGPNGaGKSTLLA~lAGm~~--------~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL 93 (248)
T COG4138 22 VRAGEILHLVGPNGAGKSTLLARMAGMTS--------GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYL 93 (248)
T ss_pred cccceEEEEECCCCccHHHHHHHHhCCCC--------CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhh
Confidence 45578899999999999999999999873 3445667766553211111111111 111110
Q ss_pred HHHHHhcccchhhhhhhhHh------HHHhhhhccCCCC----------------------------CC--chHHHHHHH
Q 012655 259 QEMVEEENNLVFVLIDEVES------LAAARKAALSGSE----------------------------PS--DSIRVVNAL 302 (459)
Q Consensus 259 ~~~~~~~~~~~illIDEid~------l~~~r~~~ls~~e----------------------------~~--~~~~~~~~l 302 (459)
.-. ....-.--.||+|-. -..+.-..+||+| |. .+..-.+.+
T Consensus 94 ~L~--qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL 171 (248)
T COG4138 94 TLH--QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL 171 (248)
T ss_pred hhc--CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH
Confidence 000 000000111232211 1122233456664 22 233334456
Q ss_pred HHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 303 LTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 303 l~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
...+..+...+..||+..|+....+ |.+++-.-+..+.-+.-.+..+.+.+...+.-
T Consensus 172 drll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q~fg~ 231 (248)
T COG4138 172 DRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYGM 231 (248)
T ss_pred HHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHHHHhcc
Confidence 6666777778999999999988777 55555333466666665555555666555543
No 466
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.73 E-value=6.5e-05 Score=81.44 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.+++...
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 386 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYD 386 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCC
Confidence 5667799999999999999999999999873
No 467
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.73 E-value=4.7e-05 Score=81.51 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=35.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+.+|+.+.|.||+|+|||||++.+++... |..+-+.+++.++
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-------p~~G~I~i~g~~i 399 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLD-------PLQGEVTLDGVSV 399 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCcEEEECCEEh
Confidence 6677899999999999999999999999873 4555577776443
No 468
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.73 E-value=7.6e-05 Score=72.64 Aligned_cols=25 Identities=44% Similarity=0.592 Sum_probs=23.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+++|.||||+|||||++++++.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 4599999999999999999999984
No 469
>PRK08118 topology modulation protein; Reviewed
Probab=97.73 E-value=4.7e-05 Score=68.81 Aligned_cols=27 Identities=37% Similarity=0.696 Sum_probs=25.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.|+++||||+||||+|+.|+..++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~ 29 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPV 29 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 489999999999999999999998775
No 470
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.73 E-value=0.00013 Score=72.53 Aligned_cols=123 Identities=14% Similarity=0.243 Sum_probs=64.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccc-cc---ch--------hhHHHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK-WF---SE--------SGKLVAKLFQKIQEM 261 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~-~~---~e--------~~~~v~~~f~~~~~~ 261 (459)
|+.+.++||||||||+||-.++...... +...++++...-+.. +. +- ......+.+..+..+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~------g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l 128 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL------GGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc------CCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence 8889999999999999999887665321 233455655332111 00 00 000011223333332
Q ss_pred HHhcccchhhhhhhhHhHHHhhhhccCCCC----CCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCC
Q 012655 262 VEEENNLVFVLIDEVESLAAARKAALSGSE----PSDSIRVVNALLTQMDKLKSSPNVIILTTSNITA 325 (459)
Q Consensus 262 ~~~~~~~~illIDEid~l~~~r~~~ls~~e----~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~ 325 (459)
+ ....+.+|+||-+..+..... +.+.. .....+.+...+..|..+....++.+|.|....+
T Consensus 129 i-~s~~~~lIVIDSvaal~~~~E--~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~ 193 (325)
T cd00983 129 V-RSGAVDLIVVDSVAALVPKAE--IEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLRE 193 (325)
T ss_pred H-hccCCCEEEEcchHhhccccc--ccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 2 234678999999988875311 11111 1112344555565555554555666666644333
No 471
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.73 E-value=8.3e-05 Score=69.93 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.+++...
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 5667799999999999999999999999863
No 472
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.72 E-value=1.7e-05 Score=75.80 Aligned_cols=123 Identities=23% Similarity=0.309 Sum_probs=79.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccc----cchhhHHHHHHHHHHHHHHHhc----
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW----FSESGKLVAKLFQKIQEMVEEE---- 265 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~----~~e~~~~v~~~f~~~~~~~~~~---- 265 (459)
+....|.|++|+||||+.+.||+.. .|+.+.|.+|+..+.+.- .....+.+..+||.++-+....
T Consensus 24 ~GvTAlFG~SGsGKTslin~IaGL~-------rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 24 RGITALFGPSGSGKTSLINMIAGLT-------RPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred CceEEEecCCCCChhhHHHHHhccC-------CccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence 4667899999999999999999998 577788999998876432 2223456778888765432210
Q ss_pred ----ccc-------hhhhhhhhHhHHHhhhhccCCCCCC-----------------------chHHHHHHHHHHHHhhcC
Q 012655 266 ----NNL-------VFVLIDEVESLAAARKAALSGSEPS-----------------------DSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 266 ----~~~-------~illIDEid~l~~~r~~~ls~~e~~-----------------------~~~~~~~~ll~~l~~l~~ 311 (459)
... .++=+=.|+.|..++...+||+|.. .+..-..+++..++++.+
T Consensus 97 L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~ 176 (352)
T COG4148 97 LRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176 (352)
T ss_pred hhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHH
Confidence 000 1122224677888888889998621 223334556677777766
Q ss_pred CCC-EEEEEecCC
Q 012655 312 SPN-VIILTTSNI 323 (459)
Q Consensus 312 ~~~-viIi~Ttn~ 323 (459)
.-+ -|+..||..
T Consensus 177 e~~IPIlYVSHS~ 189 (352)
T COG4148 177 EINIPILYVSHSL 189 (352)
T ss_pred hcCCCEEEEecCH
Confidence 555 455566553
No 473
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.72 E-value=0.00018 Score=67.79 Aligned_cols=22 Identities=32% Similarity=0.615 Sum_probs=20.3
Q ss_pred cEEEEecCCCChHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~ 216 (459)
+.++|.||+|+||||++|.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999975
No 474
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.72 E-value=1.4e-05 Score=85.15 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 ~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 26 LTVYPGEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCcC
Confidence 5667789999999999999999999999873
No 475
>PRK13695 putative NTPase; Provisional
Probab=97.72 E-value=0.00023 Score=64.61 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=20.6
Q ss_pred EEEecCCCChHHHHHHHHHHHh
Q 012655 197 VLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l 218 (459)
++|.|++|+|||||++.+++.+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998876
No 476
>PRK13949 shikimate kinase; Provisional
Probab=97.72 E-value=0.00022 Score=64.55 Aligned_cols=27 Identities=48% Similarity=0.710 Sum_probs=24.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.|+|+|+||+||||+++.+|+.++.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~ 29 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSF 29 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 499999999999999999999998665
No 477
>PLN03211 ABC transporter G-25; Provisional
Probab=97.72 E-value=0.00011 Score=80.52 Aligned_cols=31 Identities=35% Similarity=0.565 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|+.+.|.||+|+|||||+++|++.+.
T Consensus 89 ~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~ 119 (659)
T PLN03211 89 GMASPGEILAVLGPSGSGKSTLLNALAGRIQ 119 (659)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999863
No 478
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=0.00014 Score=78.03 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=28.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 22 VKFGGGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6677799999999999999999999999773
No 479
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.71 E-value=0.00024 Score=60.45 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=39.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
-+.|.|+.-+++.+.+.+..-+.-. +| .++-.+-||||+|||||.+++.||+.+
T Consensus 24 ~~~l~GQhla~~~v~~ai~~~l~~~----~p---~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 24 QRNLFGQHLAVEVVVNAIKGHLANP----NP---RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHccCcHHHHHHHHHHHHHHHcCC----CC---CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4567888878888887776533211 11 224567799999999999999999996
No 480
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.71 E-value=0.00015 Score=73.79 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=46.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccccc------c--------hhhHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF------S--------ESGKLVAKLFQKIQ 259 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~------~--------e~~~~v~~~f~~~~ 259 (459)
+..++|+|+||+|||+|+..+|..+... +..++++...+-..... + .....+..+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~------g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR------GGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc------CCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 7889999999999999999999876421 13345555433211100 0 00111223333332
Q ss_pred HHHHhcccchhhhhhhhHhHHH
Q 012655 260 EMVEEENNLVFVLIDEVESLAA 281 (459)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~ 281 (459)
. ..+.+|+||++..+..
T Consensus 156 ~-----~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 156 E-----LKPDLVIIDSIQTVYS 172 (372)
T ss_pred h-----cCCcEEEEcchHHhhc
Confidence 2 4788999999988854
No 481
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=5e-05 Score=79.47 Aligned_cols=44 Identities=27% Similarity=0.408 Sum_probs=36.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+++.+|+.+.|.|++|||||||+..+++.+. +..+-+.+|+.++
T Consensus 342 ~t~~~g~~talvG~SGaGKSTLl~lL~G~~~-------~~~G~I~vng~~l 385 (559)
T COG4988 342 LTIKAGQLTALVGASGAGKSTLLNLLLGFLA-------PTQGEIRVNGIDL 385 (559)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCcCC-------CCCceEEECCccc
Confidence 5677799999999999999999999999883 4556677876554
No 482
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.71 E-value=0.00013 Score=71.49 Aligned_cols=137 Identities=20% Similarity=0.276 Sum_probs=68.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh--cccccCCCCcceEEEEcccccccc------c---cch------hhHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL--SIRFSSRYPQCQLVEVNAHSLFSK------W---FSE------SGKLVAKLFQ 256 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l--~~~~~~~~~~~~~i~i~~~~l~~~------~---~~e------~~~~v~~~f~ 256 (459)
.+.|.|+|++|+|||+||+.+++.. ...| ...+.++...-... . .+. .........+
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f------~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRF------DGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQD 92 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCC------TEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeeccccccccccc------ccccccccccccccccccccccccccccccccccccccccccc
Confidence 5779999999999999999999873 3222 22233433221110 0 000 0111222333
Q ss_pred HHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCC
Q 012655 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRAD 336 (459)
Q Consensus 257 ~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~ 336 (459)
.+.+.+. ..+++++||+++.... ...+...+.... .+.-||.||........ . ....
T Consensus 93 ~l~~~L~--~~~~LlVlDdv~~~~~-----------------~~~l~~~~~~~~--~~~kilvTTR~~~v~~~-~-~~~~ 149 (287)
T PF00931_consen 93 QLRELLK--DKRCLLVLDDVWDEED-----------------LEELREPLPSFS--SGSKILVTTRDRSVAGS-L-GGTD 149 (287)
T ss_dssp HHHHHHC--CTSEEEEEEEE-SHHH-----------------H-------HCHH--SS-EEEEEESCGGGGTT-H-HSCE
T ss_pred cchhhhc--cccceeeeeeeccccc-----------------cccccccccccc--ccccccccccccccccc-c-cccc
Confidence 3333333 3478999999875532 222222222211 23344445544332211 1 1114
Q ss_pred eEEEeCCCCHHHHHHHHHHHHHH
Q 012655 337 IKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 337 ~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
..+.++..+.++-.+++......
T Consensus 150 ~~~~l~~L~~~ea~~L~~~~~~~ 172 (287)
T PF00931_consen 150 KVIELEPLSEEEALELFKKRAGR 172 (287)
T ss_dssp EEEECSS--HHHHHHHHHHHHTS
T ss_pred ccccccccccccccccccccccc
Confidence 67889999999999998888554
No 483
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.69 E-value=6.3e-05 Score=81.05 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=34.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..+.|.||+|+|||||++.+++... |+.+.+.+++.++
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-------p~~G~i~~~g~~i 406 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-------PQEGEILLDGAAV 406 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-------CCCcEEEECCEEC
Confidence 5677799999999999999999999998773 4455566665443
No 484
>PHA00729 NTP-binding motif containing protein
Probab=97.69 E-value=2.7e-05 Score=73.30 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
.++|+|+|||||||||.+|+..++.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999998853
No 485
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.69 E-value=0.00017 Score=76.82 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=27.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 25 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 25 FDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566778999999999999999999999976
No 486
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.69 E-value=3.1e-05 Score=70.04 Aligned_cols=23 Identities=43% Similarity=0.881 Sum_probs=20.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
.++|+|+||+||||+++.+...+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999999998
No 487
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.69 E-value=9.1e-05 Score=80.13 Aligned_cols=43 Identities=26% Similarity=0.374 Sum_probs=34.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+.+|..+.|.||+|+|||||++.+++... |..+.+.+++.+
T Consensus 361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-------p~~G~I~i~g~~ 403 (574)
T PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-------PQQGEILLNGQP 403 (574)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCceEEECCEE
Confidence 5677799999999999999999999999873 445556666654
No 488
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.68 E-value=9.4e-05 Score=84.28 Aligned_cols=132 Identities=23% Similarity=0.391 Sum_probs=86.5
Q ss_pred EEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc------ccccchh-hHH--HHHHHHHHHHHHHhccc
Q 012655 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF------SKWFSES-GKL--VAKLFQKIQEMVEEENN 267 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~------~~~~~e~-~~~--v~~~f~~~~~~~~~~~~ 267 (459)
+||.||+.+|||++...+|++.+..| +.||.|+.. +.|+... ++. -..+.-.|. ..
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~tghkf---------VRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAl------R~ 955 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARETGHKF---------VRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEAL------RR 955 (4600)
T ss_pred EEEecCCCCCcchHHHHHHHHhCccE---------EEecCcccchHHHHhhceeecCCCceeeehhHHHHHH------hc
Confidence 99999999999999999999998776 888887654 2222111 110 011111121 24
Q ss_pred chhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh---------hcCCCCEEEEEecCCCCc------ccHHHh
Q 012655 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK---------LKSSPNVIILTTSNITAA------IDIAFV 332 (459)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~---------l~~~~~viIi~Ttn~~~~------ld~al~ 332 (459)
.-.+++||+.-.. .+...++|.||.-=.. ..+++++.+++|.|+|.. +..||+
T Consensus 956 GyWIVLDELNLAp------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFR 1023 (4600)
T COG5271 956 GYWIVLDELNLAP------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFR 1023 (4600)
T ss_pred CcEEEeeccccCc------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHH
Confidence 4678899965322 3334445554432111 135788999999999876 589999
Q ss_pred ccCCeEEEeCCCCHHHHHHHHHHH
Q 012655 333 DRADIKAYVGPPTLQARYEILRSC 356 (459)
Q Consensus 333 ~R~~~~i~~~~P~~~~r~~Il~~~ 356 (459)
.|| ..++|..-.+.+...|++..
T Consensus 1024 NRF-lE~hFddipedEle~ILh~r 1046 (4600)
T COG5271 1024 NRF-LEMHFDDIPEDELEEILHGR 1046 (4600)
T ss_pred hhh-HhhhcccCcHHHHHHHHhcc
Confidence 999 66677776777777777653
No 489
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=0.00014 Score=79.56 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=28.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||||+|||||++.|++.+.
T Consensus 22 ~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~ 52 (638)
T PRK10636 22 ATINPGQKVGLVGKNGCGKSTLLALLKNEIS 52 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999763
No 490
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.67 E-value=0.00019 Score=64.39 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=22.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
++..++.||||+|||+++++++-.+..
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 358999999999999999998776643
No 491
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.67 E-value=0.00031 Score=64.81 Aligned_cols=122 Identities=25% Similarity=0.351 Sum_probs=71.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc--------------------------ccCCCCcc--eEEEEccccccccccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR--------------------------FSSRYPQC--QLVEVNAHSLFSKWFS 245 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~--------------------------~~~~~~~~--~~i~i~~~~l~~~~~~ 245 (459)
|..+++.|++|||||.|++.++.-.=.. ....+-.+ .++.++...+ .
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~-----~ 102 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPV-----N 102 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccc-----c
Confidence 7889999999999999998887543100 00000011 1111111111 1
Q ss_pred hhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCC
Q 012655 246 ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITA 325 (459)
Q Consensus 246 e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~ 325 (459)
...+..+.+.+...+.... ....+++||-+..++.. ++...+..+++.+..+...+++|+++.| +.
T Consensus 103 ~~~~~~~~~L~~l~~~~k~-~~~dViIIDSls~~~~~-----------~~~~~vl~fm~~~r~l~d~gKvIilTvh--p~ 168 (235)
T COG2874 103 WGRRSARKLLDLLLEFIKR-WEKDVIIIDSLSAFATY-----------DSEDAVLNFMTFLRKLSDLGKVIILTVH--PS 168 (235)
T ss_pred cChHHHHHHHHHHHhhHHh-hcCCEEEEecccHHhhc-----------ccHHHHHHHHHHHHHHHhCCCEEEEEeC--hh
Confidence 1223333333433333222 24578999988877652 2355677788888888888888888654 56
Q ss_pred cccHHHhcc
Q 012655 326 AIDIAFVDR 334 (459)
Q Consensus 326 ~ld~al~~R 334 (459)
.+++..+.|
T Consensus 169 ~l~e~~~~r 177 (235)
T COG2874 169 ALDEDVLTR 177 (235)
T ss_pred hcCHHHHHH
Confidence 777776655
No 492
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.66 E-value=0.0003 Score=63.19 Aligned_cols=130 Identities=20% Similarity=0.284 Sum_probs=75.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccc------cchh-------hHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW------FSES-------GKLVAKLF 255 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~------~~e~-------~~~v~~~f 255 (459)
+....|..|-|.|.+|+||||++|+|--.- .|..+.|.+++..+..+. .... ...+..+|
T Consensus 27 L~A~~GdVisIIGsSGSGKSTfLRCiN~LE-------~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVF 99 (256)
T COG4598 27 LQANAGDVISIIGSSGSGKSTFLRCINFLE-------KPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVF 99 (256)
T ss_pred eecCCCCEEEEecCCCCchhHHHHHHHhhc-------CCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhh
Confidence 444557889999999999999999996543 455666888877664221 1111 22344555
Q ss_pred HHHHHHHH-----h-cccchhh-------hhhhhHhHHH---------hhhhccCCCC---------------------C
Q 012655 256 QKIQEMVE-----E-ENNLVFV-------LIDEVESLAA---------ARKAALSGSE---------------------P 292 (459)
Q Consensus 256 ~~~~~~~~-----~-~~~~~il-------lIDEid~l~~---------~r~~~ls~~e---------------------~ 292 (459)
+...-+.. . ...|.-+ -++-.+.+.. .....+||++ |
T Consensus 100 Q~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEP 179 (256)
T COG4598 100 QHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEP 179 (256)
T ss_pred hhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCC
Confidence 53221100 0 0011000 0111111111 1122345552 2
Q ss_pred --CchHHHHHHHHHHHHhhcCCCCEEEEEecCCCC
Q 012655 293 --SDSIRVVNALLTQMDKLKSSPNVIILTTSNITA 325 (459)
Q Consensus 293 --~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~ 325 (459)
..++..+.++|+.|..+...++++++.||....
T Consensus 180 TSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F 214 (256)
T COG4598 180 TSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF 214 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH
Confidence 255889999999999999999999999997643
No 493
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.66 E-value=7.8e-05 Score=88.38 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=28.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+.+.+|..+.|.||+||||||+++.|.+.+..
T Consensus 1189 l~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1189 FSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 45667889999999999999999999998864
No 494
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.66 E-value=6.5e-05 Score=75.34 Aligned_cols=21 Identities=48% Similarity=0.637 Sum_probs=19.1
Q ss_pred EecCCCChHHHHHHHHHHHhc
Q 012655 199 LHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 199 L~GPpGtGKTtLaralA~~l~ 219 (459)
|.||+|+|||||+++|++...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~ 21 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ 21 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC
Confidence 579999999999999999873
No 495
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.65 E-value=7.4e-05 Score=89.91 Aligned_cols=43 Identities=26% Similarity=0.162 Sum_probs=33.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||++.|++.+. +..+-+.+++.+
T Consensus 1960 f~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-------ptsG~I~i~G~~ 2002 (2272)
T TIGR01257 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-------VTSGDATVAGKS 2002 (2272)
T ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-------CCccEEEECCEE
Confidence 4567789999999999999999999999873 334445555543
No 496
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00011 Score=76.07 Aligned_cols=43 Identities=16% Similarity=0.363 Sum_probs=34.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.|..|+.|.|.|+|||||||++|+|-+-+. +.+-|.+++.++
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d--------~sG~I~IdG~di 415 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--------YSGSILIDGQDI 415 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhc--------cCCcEEECCeeH
Confidence 6788899999999999999999999998774 233356666543
No 497
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.65 E-value=0.00012 Score=75.21 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=88.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccc-------------------------
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW------------------------- 243 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~------------------------- 243 (459)
+.+.+|....|.|.||.|||||++.|.+.+. |+.+-+.+++....-..
T Consensus 25 l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-------P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ 97 (501)
T COG3845 25 LSVKKGEIHALLGENGAGKSTLMKILFGLYQ-------PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVA 97 (501)
T ss_pred eeecCCcEEEEeccCCCCHHHHHHHHhCccc-------CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchh
Confidence 6677899999999999999999999999884 44444555543221000
Q ss_pred ----cc-hhhH----HHHHHHHHHHHHHH----------------------------hcccchhhhhhhhHhHHHhhhhc
Q 012655 244 ----FS-ESGK----LVAKLFQKIQEMVE----------------------------EENNLVFVLIDEVESLAAARKAA 286 (459)
Q Consensus 244 ----~~-e~~~----~v~~~f~~~~~~~~----------------------------~~~~~~illIDEid~l~~~r~~~ 286 (459)
.+ +... ..+..-.++.++.+ -...+.+|++||-.+.
T Consensus 98 ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaV------- 170 (501)
T COG3845 98 ENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAV------- 170 (501)
T ss_pred hhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCccc-------
Confidence 00 0000 01111111111111 1234567888884332
Q ss_pred cCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc---cHHHhccCCeEEEeCC-CCHHHHHHHHHHHHH
Q 012655 287 LSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRADIKAYVGP-PTLQARYEILRSCLQ 358 (459)
Q Consensus 287 ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l---d~al~~R~~~~i~~~~-P~~~~r~~Il~~~l~ 358 (459)
..+.-+..|+..+..++..++.||+.||-..+.. |..-+-|-++.+-.-. .......++.+-+..
T Consensus 171 -------LTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG 239 (501)
T COG3845 171 -------LTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVG 239 (501)
T ss_pred -------CCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhcC
Confidence 3356678899999999999999999999877664 4444455566554333 222234455555544
No 498
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.65 E-value=0.00019 Score=74.97 Aligned_cols=77 Identities=22% Similarity=0.376 Sum_probs=46.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccch--------------hhHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE--------------SGKLVAKLFQKIQ 259 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e--------------~~~~v~~~f~~~~ 259 (459)
+..++|+|+||+|||+|+..++..... .+..++++...+-....... ....+..+++.+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~------~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA------AGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 788999999999999999999987642 12334556554322111000 0011223333332
Q ss_pred HHHHhcccchhhhhhhhHhHHH
Q 012655 260 EMVEEENNLVFVLIDEVESLAA 281 (459)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~ 281 (459)
+ ..+.+++||++..+..
T Consensus 154 ~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 154 E-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred h-----hCCCEEEEechhhhcc
Confidence 2 3678999999988754
No 499
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00015 Score=70.96 Aligned_cols=154 Identities=23% Similarity=0.230 Sum_probs=86.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccc-----------------------
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFS----------------------- 245 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~----------------------- 245 (459)
|.+..|+.+-|.|.+|||||++++++.+.+..+-. ....+-+.+++.+++.....
T Consensus 26 ~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~--~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnP 103 (316)
T COG0444 26 FELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA--RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNP 103 (316)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCC--eEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCC
Confidence 67778999999999999999999999999863210 01123355666544321100
Q ss_pred --hhhHHHHHHHHHHHHH------HH-hcccchhhhhhhhHhHHHhhhhccCCC---------------------CCCc-
Q 012655 246 --ESGKLVAKLFQKIQEM------VE-EENNLVFVLIDEVESLAAARKAALSGS---------------------EPSD- 294 (459)
Q Consensus 246 --e~~~~v~~~f~~~~~~------~~-~~~~~~illIDEid~l~~~r~~~ls~~---------------------e~~~- 294 (459)
..+.++.+........ .. ...-...|=|++.+.....-...+||| ||..
T Consensus 104 v~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTA 183 (316)
T COG0444 104 VMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183 (316)
T ss_pred hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcch
Confidence 0111121111110000 00 000112244555565666666667777 3443
Q ss_pred -hHHHHHHHHHHHHhhcC-CCCEEEEEecCCCCc---ccHHHhccCCeEEEeCCC
Q 012655 295 -SIRVVNALLTQMDKLKS-SPNVIILTTSNITAA---IDIAFVDRADIKAYVGPP 344 (459)
Q Consensus 295 -~~~~~~~ll~~l~~l~~-~~~viIi~Ttn~~~~---ld~al~~R~~~~i~~~~P 344 (459)
+..++.++++.|.++++ .+..+|+.||+..-. -|...+-..+.+++.++.
T Consensus 184 LDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~ 238 (316)
T COG0444 184 LDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPV 238 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCH
Confidence 35566778888888865 677889999985321 133333445677776653
No 500
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.65 E-value=0.0009 Score=66.80 Aligned_cols=83 Identities=17% Similarity=0.306 Sum_probs=55.7
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCc---------------cc
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---------------ID 328 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~---------------ld 328 (459)
....+.|++|||+|++.+ ..+..++..+..+-..+++++|...+.... ..
T Consensus 169 ~~~~~iViiIDdLDR~~~---------------~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~ 233 (325)
T PF07693_consen 169 ESKKRIVIIIDDLDRCSP---------------EEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDG 233 (325)
T ss_pred cCCceEEEEEcchhcCCc---------------HHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccH
Confidence 345678999999998854 234555666665555677777777664311 12
Q ss_pred HHHhcc-CCeEEEeCCCCHHHHHHHHHHHHHHHH
Q 012655 329 IAFVDR-ADIKAYVGPPTLQARYEILRSCLQELI 361 (459)
Q Consensus 329 ~al~~R-~~~~i~~~~P~~~~r~~Il~~~l~~~~ 361 (459)
..++.+ ++..+.+|+|+..+...++...+.+..
T Consensus 234 ~~yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~~~ 267 (325)
T PF07693_consen 234 REYLEKIIQVPFSLPPPSPSDLERYLNELLESLE 267 (325)
T ss_pred HHHHHhhcCeEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 234433 678889999999988888888876653
Done!