Query 012655
Match_columns 459
No_of_seqs 446 out of 2969
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 13:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.9E-38 6.5E-43 320.1 22.7 242 156-454 145-394 (405)
2 4b4t_I 26S protease regulatory 100.0 2.7E-37 9.2E-42 312.5 24.3 245 156-457 179-431 (437)
3 4b4t_M 26S protease regulatory 100.0 3.1E-37 1.1E-41 315.6 19.3 241 153-450 175-423 (434)
4 4b4t_H 26S protease regulatory 100.0 1.3E-36 4.3E-41 310.4 22.2 241 156-453 206-454 (467)
5 4b4t_K 26S protease regulatory 100.0 7E-36 2.4E-40 305.4 27.0 239 155-450 168-415 (428)
6 4b4t_L 26S protease subunit RP 100.0 1.5E-36 5.1E-41 310.8 20.9 240 156-452 178-425 (437)
7 3cf2_A TER ATPase, transitiona 100.0 1.8E-37 6.3E-42 338.0 -8.7 333 36-451 357-745 (806)
8 3cf2_A TER ATPase, transitiona 100.0 1.3E-30 4.3E-35 284.3 11.6 233 157-449 202-459 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 100.0 7.2E-29 2.5E-33 246.7 21.7 215 157-427 10-226 (322)
10 3eie_A Vacuolar protein sortin 100.0 5.7E-29 1.9E-33 247.4 17.7 215 157-427 16-231 (322)
11 3cf0_A Transitional endoplasmi 100.0 1.2E-28 4E-33 242.8 17.1 236 157-449 13-281 (301)
12 3h4m_A Proteasome-activating n 100.0 1.4E-27 4.9E-32 232.4 23.0 241 157-454 15-263 (285)
13 2qp9_X Vacuolar protein sortin 100.0 4.4E-28 1.5E-32 244.2 19.5 217 155-427 47-264 (355)
14 1lv7_A FTSH; alpha/beta domain 100.0 1.7E-27 5.9E-32 228.8 22.1 239 155-450 8-253 (257)
15 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.6E-27 5.4E-32 228.9 19.2 243 157-453 4-253 (262)
16 2x8a_A Nuclear valosin-contain 100.0 9.5E-28 3.3E-32 233.2 17.8 236 157-449 8-264 (274)
17 2ce7_A Cell division protein F 100.0 2.7E-27 9.4E-32 245.6 21.6 238 156-450 13-257 (476)
18 2zan_A Vacuolar protein sortin 99.9 4.7E-27 1.6E-31 243.5 15.2 216 156-427 131-348 (444)
19 3hu3_A Transitional endoplasmi 99.9 5.4E-26 1.8E-30 237.5 20.3 238 157-454 202-464 (489)
20 3d8b_A Fidgetin-like protein 1 99.9 1.2E-25 4.1E-30 226.5 21.5 239 156-450 81-335 (357)
21 3b9p_A CG5977-PA, isoform A; A 99.9 2.3E-25 7.9E-30 218.2 20.3 237 156-448 18-271 (297)
22 1ixz_A ATP-dependent metallopr 99.9 3.1E-25 1E-29 212.7 20.0 234 156-446 13-253 (254)
23 3vfd_A Spastin; ATPase, microt 99.9 5.7E-25 2E-29 224.1 21.3 236 157-448 113-364 (389)
24 2dhr_A FTSH; AAA+ protein, hex 99.9 1.7E-25 5.7E-30 233.5 14.2 238 156-450 28-272 (499)
25 1iy2_A ATP-dependent metallopr 99.9 3.8E-24 1.3E-28 208.0 21.1 234 156-446 37-277 (278)
26 2r62_A Cell division protease 99.9 5.2E-27 1.8E-31 226.6 -3.0 238 156-449 8-253 (268)
27 1ypw_A Transitional endoplasmi 99.9 2.5E-26 8.7E-31 253.7 -11.2 218 157-427 475-694 (806)
28 3t15_A Ribulose bisphosphate c 99.9 1.2E-21 4E-26 192.0 16.3 175 192-393 34-221 (293)
29 1ypw_A Transitional endoplasmi 99.8 1E-20 3.5E-25 209.0 15.2 216 156-427 201-418 (806)
30 3syl_A Protein CBBX; photosynt 99.8 1E-18 3.6E-23 171.5 14.9 187 154-360 26-220 (309)
31 3uk6_A RUVB-like 2; hexameric 99.8 3.4E-18 1.2E-22 172.0 17.9 223 157-449 42-330 (368)
32 3pfi_A Holliday junction ATP-d 99.8 2.4E-17 8.1E-22 164.1 19.3 209 157-448 27-253 (338)
33 1ofh_A ATP-dependent HSL prote 99.8 2.4E-18 8.3E-23 168.5 11.2 187 155-355 11-213 (310)
34 2c9o_A RUVB-like 1; hexameric 99.7 6.5E-18 2.2E-22 175.5 14.6 110 155-283 33-142 (456)
35 2z4s_A Chromosomal replication 99.7 5.8E-17 2E-21 167.5 15.0 196 195-450 131-333 (440)
36 2r44_A Uncharacterized protein 99.7 7.3E-17 2.5E-21 160.2 14.2 236 156-452 24-300 (331)
37 1hqc_A RUVB; extended AAA-ATPa 99.7 2.2E-16 7.4E-21 155.9 16.4 210 157-448 10-237 (324)
38 3hws_A ATP-dependent CLP prote 99.7 1.9E-16 6.6E-21 159.4 16.3 187 158-355 14-267 (363)
39 1d2n_A N-ethylmaleimide-sensit 99.7 1.2E-16 4.1E-21 154.3 13.3 134 194-346 64-200 (272)
40 3m6a_A ATP-dependent protease 99.7 4E-17 1.4E-21 172.9 9.8 175 156-359 78-268 (543)
41 2v1u_A Cell division control p 99.7 3.6E-16 1.2E-20 157.4 15.9 238 159-451 19-278 (387)
42 2chg_A Replication factor C sm 99.7 2.6E-15 9E-20 138.6 18.0 206 157-447 15-224 (226)
43 1g41_A Heat shock protein HSLU 99.7 1.1E-16 3.9E-21 163.8 9.0 176 150-353 6-188 (444)
44 3u61_B DNA polymerase accessor 99.6 5.1E-16 1.8E-20 153.6 12.4 158 157-360 24-181 (324)
45 3pvs_A Replication-associated 99.6 1.4E-15 4.9E-20 157.1 16.0 210 157-447 24-242 (447)
46 1g8p_A Magnesium-chelatase 38 99.6 1.3E-15 4.6E-20 151.7 15.1 259 157-455 22-328 (350)
47 1l8q_A Chromosomal replication 99.6 4.7E-16 1.6E-20 154.0 11.2 139 195-359 38-181 (324)
48 2qby_B CDC6 homolog 3, cell di 99.6 3.5E-15 1.2E-19 150.5 17.3 228 159-450 20-271 (384)
49 4fcw_A Chaperone protein CLPB; 99.6 4.1E-15 1.4E-19 145.8 17.0 175 156-361 14-233 (311)
50 1njg_A DNA polymerase III subu 99.6 5.2E-15 1.8E-19 138.2 16.2 213 157-446 21-248 (250)
51 3bos_A Putative DNA replicatio 99.6 1.3E-15 4.3E-20 143.1 11.7 183 194-447 52-241 (242)
52 1um8_A ATP-dependent CLP prote 99.6 2.6E-15 8.9E-20 151.8 14.8 188 156-354 18-283 (376)
53 1sxj_A Activator 1 95 kDa subu 99.6 1.8E-15 6.1E-20 159.5 13.7 227 157-448 37-273 (516)
54 1in4_A RUVB, holliday junction 99.6 3.7E-14 1.3E-18 141.2 21.0 209 158-449 24-250 (334)
55 2qby_A CDC6 homolog 1, cell di 99.6 1.6E-14 5.6E-19 145.0 17.0 233 158-450 19-273 (386)
56 1fnn_A CDC6P, cell division co 99.6 3.7E-14 1.2E-18 143.0 18.1 226 159-449 17-274 (389)
57 1jbk_A CLPB protein; beta barr 99.6 3E-16 1E-20 141.5 2.1 167 157-353 20-194 (195)
58 3pxi_A Negative regulator of g 99.6 2.2E-14 7.5E-19 158.0 16.5 170 156-361 488-679 (758)
59 1sxj_D Activator 1 41 kDa subu 99.5 2.8E-14 9.7E-19 142.1 12.6 162 157-359 35-207 (353)
60 1r6b_X CLPA protein; AAA+, N-t 99.5 5.9E-14 2E-18 154.5 16.3 169 158-360 457-669 (758)
61 3f9v_A Minichromosome maintena 99.5 1.5E-15 5.1E-20 162.3 3.4 249 157-454 293-592 (595)
62 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 6.5E-15 2.2E-19 153.7 8.0 235 158-443 21-280 (500)
63 1iqp_A RFCS; clamp loader, ext 99.5 1.5E-13 5E-18 135.2 16.3 158 157-359 23-184 (327)
64 3pxg_A Negative regulator of g 99.5 2.1E-14 7.3E-19 149.4 8.5 159 156-360 177-341 (468)
65 1jr3_A DNA polymerase III subu 99.5 3.5E-13 1.2E-17 135.2 16.0 165 157-359 14-193 (373)
66 1r6b_X CLPA protein; AAA+, N-t 99.5 7.2E-14 2.5E-18 153.8 11.6 175 156-360 183-365 (758)
67 1sxj_B Activator 1 37 kDa subu 99.5 2.9E-13 1E-17 132.9 14.7 161 157-359 19-181 (323)
68 3te6_A Regulatory protein SIR3 99.5 2.5E-13 8.5E-18 133.6 14.1 171 161-360 22-214 (318)
69 2chq_A Replication factor C sm 99.5 4.4E-14 1.5E-18 138.5 8.5 161 157-359 15-176 (319)
70 1qvr_A CLPB protein; coiled co 99.5 8.3E-14 2.8E-18 155.2 11.0 175 156-360 167-348 (854)
71 2p65_A Hypothetical protein PF 99.5 1.7E-14 5.8E-19 129.7 4.3 160 157-345 20-187 (187)
72 1qvr_A CLPB protein; coiled co 99.5 5.7E-13 2E-17 148.4 15.8 175 156-361 555-774 (854)
73 3pxi_A Negative regulator of g 99.4 2E-13 6.7E-18 150.3 10.1 158 156-359 177-340 (758)
74 2bjv_A PSP operon transcriptio 99.4 6.7E-13 2.3E-17 127.4 11.8 165 157-361 4-198 (265)
75 1sxj_C Activator 1 40 kDa subu 99.4 2E-12 6.7E-17 128.8 15.4 158 157-359 23-184 (340)
76 1sxj_E Activator 1 40 kDa subu 99.4 1.9E-12 6.4E-17 129.2 11.0 168 157-359 12-208 (354)
77 1w5s_A Origin recognition comp 99.3 1.4E-11 4.8E-16 125.0 16.9 185 159-360 22-231 (412)
78 3k1j_A LON protease, ATP-depen 99.3 3.2E-12 1.1E-16 137.1 12.2 136 267-448 201-374 (604)
79 1ojl_A Transcriptional regulat 99.3 7.6E-12 2.6E-16 122.8 10.6 161 160-361 3-194 (304)
80 3co5_A Putative two-component 99.3 3.7E-12 1.3E-16 110.8 5.4 132 160-344 5-142 (143)
81 3n70_A Transport activator; si 99.3 7.2E-12 2.5E-16 109.2 7.2 135 160-344 2-144 (145)
82 1a5t_A Delta prime, HOLB; zinc 99.2 8.9E-11 3.1E-15 116.6 11.8 141 195-357 25-180 (334)
83 2gno_A DNA polymerase III, gam 99.1 1.3E-10 4.5E-15 113.9 11.2 134 195-357 19-152 (305)
84 3ec2_A DNA replication protein 99.1 3.6E-11 1.2E-15 108.3 5.3 110 192-327 36-147 (180)
85 3cmw_A Protein RECA, recombina 99.0 5.1E-10 1.7E-14 130.2 10.4 162 154-326 1015-1221(1706)
86 2kjq_A DNAA-related protein; s 99.0 2.9E-10 9.8E-15 99.6 5.2 102 194-336 36-140 (149)
87 3f8t_A Predicted ATPase involv 99.0 2.1E-09 7.2E-14 109.7 12.3 207 196-454 241-488 (506)
88 4akg_A Glutathione S-transfera 98.9 1.1E-08 3.9E-13 123.8 18.6 146 194-361 1267-1435(2695)
89 2w58_A DNAI, primosome compone 98.7 2.9E-09 1E-13 97.4 1.9 72 195-279 55-127 (202)
90 4akg_A Glutathione S-transfera 98.7 2.6E-07 9E-12 112.1 17.0 131 194-354 645-790 (2695)
91 2vhj_A Ntpase P4, P4; non- hyd 98.6 2.2E-08 7.4E-13 97.9 4.3 113 194-323 123-235 (331)
92 2qen_A Walker-type ATPase; unk 98.6 4.4E-07 1.5E-11 89.3 13.3 161 159-358 12-217 (350)
93 1ye8_A Protein THEP1, hypothet 98.6 2.5E-07 8.6E-12 83.2 10.0 27 196-222 2-28 (178)
94 3kw6_A 26S protease regulatory 98.6 6.1E-08 2.1E-12 74.9 5.1 74 342-452 1-76 (78)
95 1ny5_A Transcriptional regulat 98.5 3.2E-07 1.1E-11 92.8 11.8 139 195-361 161-329 (387)
96 3rlf_A Maltose/maltodextrin im 98.5 9.3E-08 3.2E-12 96.0 6.1 43 189-238 24-66 (381)
97 3gfo_A Cobalt import ATP-bindi 98.5 4.2E-08 1.5E-12 94.5 3.2 44 189-239 29-72 (275)
98 1tue_A Replication protein E1; 98.5 3.2E-07 1.1E-11 83.8 7.8 26 194-219 58-83 (212)
99 2fna_A Conserved hypothetical 98.4 7E-07 2.4E-11 88.0 10.6 44 158-219 12-55 (357)
100 2r2a_A Uncharacterized protein 98.4 1.3E-07 4.6E-12 86.6 4.6 135 195-345 6-154 (199)
101 3vkg_A Dynein heavy chain, cyt 98.4 2.9E-06 9.8E-11 103.9 17.0 143 194-360 1304-1472(3245)
102 2qgz_A Helicase loader, putati 98.4 4.8E-08 1.6E-12 95.8 1.3 73 194-279 152-226 (308)
103 4g1u_C Hemin import ATP-bindin 98.4 2.6E-08 8.8E-13 95.6 -1.0 31 189-219 32-62 (266)
104 3fvq_A Fe(3+) IONS import ATP- 98.4 2.9E-07 1E-11 91.7 5.7 43 189-238 25-67 (359)
105 1z47_A CYSA, putative ABC-tran 98.3 2.9E-07 9.9E-12 91.7 5.1 43 189-238 36-78 (355)
106 1vpl_A ABC transporter, ATP-bi 98.3 1.2E-06 4E-11 83.5 9.1 42 189-237 36-77 (256)
107 2yyz_A Sugar ABC transporter, 98.3 3.2E-07 1.1E-11 91.6 5.3 30 189-218 24-53 (359)
108 2krk_A 26S protease regulatory 98.3 3.8E-07 1.3E-11 71.8 4.4 73 341-450 8-82 (86)
109 2pcj_A ABC transporter, lipopr 98.3 1.5E-06 5E-11 81.1 9.1 43 189-238 25-67 (224)
110 2ehv_A Hypothetical protein PH 98.3 8.8E-07 3E-11 83.1 7.7 26 191-216 27-52 (251)
111 4a74_A DNA repair and recombin 98.3 1.7E-06 5.8E-11 80.1 9.3 146 192-343 23-199 (231)
112 3tui_C Methionine import ATP-b 98.3 3.7E-07 1.3E-11 91.1 4.7 44 189-239 49-92 (366)
113 1g6h_A High-affinity branched- 98.3 1.1E-06 3.6E-11 83.9 7.5 43 189-238 28-70 (257)
114 2it1_A 362AA long hypothetical 98.3 3.9E-07 1.3E-11 91.1 4.5 42 189-237 24-65 (362)
115 3tif_A Uncharacterized ABC tra 98.3 1.5E-06 5.1E-11 81.7 8.1 43 189-238 26-68 (235)
116 2olj_A Amino acid ABC transpor 98.3 2.5E-06 8.6E-11 81.5 9.7 43 189-238 45-87 (263)
117 1g29_1 MALK, maltose transport 98.3 6.4E-07 2.2E-11 89.9 5.5 43 189-238 24-66 (372)
118 2qi9_C Vitamin B12 import ATP- 98.2 2.8E-06 9.5E-11 80.6 9.2 31 189-219 21-51 (249)
119 3d31_A Sulfate/molybdate ABC t 98.2 4.7E-07 1.6E-11 90.1 3.9 43 189-238 21-63 (348)
120 2onk_A Molybdate/tungstate ABC 98.2 2.8E-06 9.6E-11 80.1 8.3 40 189-236 20-59 (240)
121 1v43_A Sugar-binding transport 98.2 1.3E-07 4.3E-12 95.0 -1.1 44 189-239 32-75 (372)
122 3cmu_A Protein RECA, recombina 98.2 2.7E-06 9.2E-11 100.4 9.7 121 191-322 1424-1562(2050)
123 4gp7_A Metallophosphoesterase; 98.2 7.3E-07 2.5E-11 79.4 3.7 25 189-213 4-28 (171)
124 3dzd_A Transcriptional regulat 98.2 1.1E-05 3.8E-10 80.9 12.7 137 196-361 154-320 (368)
125 1oxx_K GLCV, glucose, ABC tran 98.2 5.9E-07 2E-11 89.6 2.8 31 189-219 26-56 (353)
126 1jr3_D DNA polymerase III, del 98.1 9.6E-06 3.3E-10 80.2 10.6 133 195-359 19-157 (343)
127 3nh6_A ATP-binding cassette SU 98.1 8.9E-07 3E-11 86.5 2.9 43 189-238 75-117 (306)
128 3vkg_A Dynein heavy chain, cyt 98.1 8.4E-06 2.9E-10 99.8 11.6 123 194-353 604-749 (3245)
129 2zu0_C Probable ATP-dependent 98.1 1.1E-05 3.6E-10 77.3 10.1 30 189-218 41-70 (267)
130 2nq2_C Hypothetical ABC transp 98.1 5.3E-06 1.8E-10 78.8 7.9 31 189-219 26-56 (253)
131 1n0w_A DNA repair protein RAD5 98.1 1.4E-05 4.6E-10 74.5 10.1 46 193-238 23-68 (243)
132 2d2e_A SUFC protein; ABC-ATPas 98.1 7.9E-06 2.7E-10 77.5 8.3 45 189-238 24-68 (250)
133 3vlf_B 26S protease regulatory 98.0 7.4E-06 2.5E-10 64.7 6.2 47 405-451 25-73 (88)
134 2cvh_A DNA repair and recombin 98.0 5.6E-06 1.9E-10 76.0 6.0 24 193-216 19-42 (220)
135 2w0m_A SSO2452; RECA, SSPF, un 98.0 6.9E-06 2.4E-10 75.8 6.5 26 193-218 22-47 (235)
136 3hr8_A Protein RECA; alpha and 98.0 1E-05 3.5E-10 80.5 7.4 120 194-321 61-195 (356)
137 3gd7_A Fusion complex of cysti 98.0 9.8E-06 3.4E-10 81.7 7.4 31 189-219 42-72 (390)
138 3aji_B S6C, proteasome (prosom 97.9 1.8E-05 6.2E-10 61.6 6.4 47 405-451 25-73 (83)
139 3qf4_B Uncharacterized ABC tra 97.9 9.3E-06 3.2E-10 86.7 5.6 44 189-239 376-419 (598)
140 1pzn_A RAD51, DNA repair and r 97.9 2.7E-05 9.4E-10 77.4 8.6 132 190-323 127-286 (349)
141 3j16_B RLI1P; ribosome recycli 97.8 2.1E-05 7.2E-10 83.8 7.5 30 191-220 100-129 (608)
142 2z43_A DNA repair and recombin 97.8 3.8E-05 1.3E-09 75.5 8.8 128 193-322 106-256 (324)
143 2zr9_A Protein RECA, recombina 97.8 1.6E-05 5.3E-10 79.2 6.0 80 194-280 61-152 (349)
144 3lda_A DNA repair protein RAD5 97.8 2.6E-05 8.9E-10 78.9 7.7 128 191-322 175-327 (400)
145 1tf7_A KAIC; homohexamer, hexa 97.8 1.2E-05 4.2E-10 84.4 5.1 28 191-218 36-65 (525)
146 1v5w_A DMC1, meiotic recombina 97.8 3.3E-05 1.1E-09 76.7 7.8 129 193-323 121-273 (343)
147 3b5x_A Lipid A export ATP-bind 97.8 2.2E-05 7.4E-10 83.6 6.8 43 189-238 364-406 (582)
148 1u0j_A DNA replication protein 97.8 0.00018 6E-09 68.5 12.3 26 194-219 104-129 (267)
149 2eyu_A Twitching motility prot 97.8 4.6E-05 1.6E-09 72.6 8.0 28 193-220 24-51 (261)
150 2pt7_A CAG-ALFA; ATPase, prote 97.8 9E-06 3.1E-10 80.3 2.9 37 194-237 171-207 (330)
151 1yqt_A RNAse L inhibitor; ATP- 97.8 7.8E-05 2.7E-09 78.4 10.2 30 190-219 43-72 (538)
152 3ozx_A RNAse L inhibitor; ATP 97.7 3.5E-05 1.2E-09 81.1 7.2 30 191-220 22-51 (538)
153 1nlf_A Regulatory protein REPA 97.7 7.7E-05 2.6E-09 71.5 9.1 29 191-219 27-55 (279)
154 3qf4_A ABC transporter, ATP-bi 97.7 1.2E-05 4.3E-10 85.5 3.7 44 189-239 364-407 (587)
155 4a82_A Cystic fibrosis transme 97.7 4.8E-06 1.7E-10 88.5 0.4 44 189-239 362-405 (578)
156 3b60_A Lipid A export ATP-bind 97.7 2E-05 6.8E-10 83.9 4.2 44 189-239 364-407 (582)
157 3ozx_A RNAse L inhibitor; ATP 97.7 5.7E-05 1.9E-09 79.4 7.5 31 189-219 289-319 (538)
158 3bk7_A ABC transporter ATP-bin 97.7 0.00013 4.6E-09 77.7 10.4 32 189-220 377-408 (607)
159 3vaa_A Shikimate kinase, SK; s 97.7 2.4E-05 8.4E-10 71.0 4.0 34 189-222 20-53 (199)
160 1zp6_A Hypothetical protein AT 97.7 2.1E-05 7.2E-10 70.6 3.4 28 191-218 6-33 (191)
161 2pjz_A Hypothetical protein ST 97.6 4E-05 1.4E-09 73.1 5.4 29 189-218 26-54 (263)
162 1yqt_A RNAse L inhibitor; ATP- 97.6 9.9E-05 3.4E-09 77.7 8.8 32 189-220 307-338 (538)
163 1b0u_A Histidine permease; ABC 97.6 2.6E-05 9.1E-10 74.3 3.8 44 189-239 27-70 (262)
164 3thx_A DNA mismatch repair pro 97.6 9.8E-05 3.3E-09 82.2 8.7 26 192-217 660-685 (934)
165 3thx_B DNA mismatch repair pro 97.6 0.00011 3.9E-09 81.5 9.2 27 191-217 670-696 (918)
166 3ux8_A Excinuclease ABC, A sub 97.6 0.00011 3.6E-09 79.5 8.8 27 189-215 343-369 (670)
167 3bk7_A ABC transporter ATP-bin 97.6 0.00013 4.3E-09 77.9 9.1 30 190-219 113-142 (607)
168 1ji0_A ABC transporter; ATP bi 97.6 2.8E-05 9.6E-10 73.2 3.6 43 189-238 27-69 (240)
169 1sgw_A Putative ABC transporte 97.6 2.7E-05 9.1E-10 72.0 3.4 43 189-238 30-72 (214)
170 3cmu_A Protein RECA, recombina 97.6 9.2E-05 3.1E-09 87.6 8.5 127 191-324 729-869 (2050)
171 2dr3_A UPF0273 protein PH0284; 97.6 0.0001 3.6E-09 68.5 7.0 26 193-218 22-47 (247)
172 1xp8_A RECA protein, recombina 97.6 8.8E-05 3E-09 74.2 6.8 123 194-323 74-210 (366)
173 2ihy_A ABC transporter, ATP-bi 97.6 3.7E-05 1.3E-09 74.0 3.9 44 189-239 42-85 (279)
174 3ux8_A Excinuclease ABC, A sub 97.6 9.4E-05 3.2E-09 80.0 7.4 23 189-211 39-61 (670)
175 2ff7_A Alpha-hemolysin translo 97.6 3.6E-05 1.2E-09 72.8 3.6 43 189-238 30-72 (247)
176 2bwj_A Adenylate kinase 5; pho 97.6 0.0004 1.4E-08 62.3 10.4 28 194-221 12-39 (199)
177 2ixe_A Antigen peptide transpo 97.6 3.9E-05 1.3E-09 73.5 3.8 44 189-239 40-83 (271)
178 1mv5_A LMRA, multidrug resista 97.5 3.5E-05 1.2E-09 72.6 3.4 31 189-219 23-53 (243)
179 3umf_A Adenylate kinase; rossm 97.5 0.00057 1.9E-08 63.1 11.4 31 191-221 26-56 (217)
180 2yz2_A Putative ABC transporte 97.5 4.1E-05 1.4E-09 73.1 3.8 43 189-238 28-70 (266)
181 1qhx_A CPT, protein (chloramph 97.5 4.6E-05 1.6E-09 67.5 3.8 29 194-222 3-31 (178)
182 1tev_A UMP-CMP kinase; ploop, 97.5 0.00022 7.6E-09 63.7 8.4 28 194-221 3-30 (196)
183 1htw_A HI0065; nucleotide-bind 97.5 4.9E-05 1.7E-09 66.8 3.9 29 190-218 29-57 (158)
184 1kag_A SKI, shikimate kinase I 97.5 4.7E-05 1.6E-09 67.1 3.6 28 194-221 4-31 (173)
185 1jjv_A Dephospho-COA kinase; P 97.5 0.00032 1.1E-08 63.7 9.0 25 196-221 4-28 (206)
186 1u94_A RECA protein, recombina 97.5 0.00015 5.2E-09 72.2 7.3 81 194-281 63-155 (356)
187 2pze_A Cystic fibrosis transme 97.5 5.3E-05 1.8E-09 70.7 3.7 31 189-219 29-59 (229)
188 2i1q_A DNA repair and recombin 97.5 0.00022 7.6E-09 69.7 8.4 128 193-322 97-257 (322)
189 3jvv_A Twitching mobility prot 97.5 6E-05 2E-09 75.1 4.3 27 194-220 123-149 (356)
190 4eun_A Thermoresistant glucoki 97.5 9E-05 3.1E-09 67.3 5.0 27 194-220 29-55 (200)
191 2if2_A Dephospho-COA kinase; a 97.5 0.00086 2.9E-08 60.6 11.5 25 196-221 3-27 (204)
192 3b9q_A Chloroplast SRP recepto 97.5 0.00013 4.6E-09 70.9 6.2 43 190-239 96-138 (302)
193 3trf_A Shikimate kinase, SK; a 97.4 7.1E-05 2.4E-09 66.7 3.9 29 194-222 5-33 (185)
194 2yhs_A FTSY, cell division pro 97.4 0.00016 5.3E-09 74.7 6.8 31 189-219 288-318 (503)
195 2ius_A DNA translocase FTSK; n 97.4 0.00095 3.2E-08 69.4 12.7 75 269-355 299-375 (512)
196 2cbz_A Multidrug resistance-as 97.4 4.6E-05 1.6E-09 71.5 2.5 31 189-219 26-56 (237)
197 1knq_A Gluconate kinase; ALFA/ 97.4 0.00013 4.3E-09 64.5 4.9 27 194-220 8-34 (175)
198 4aby_A DNA repair protein RECN 97.4 0.00046 1.6E-08 69.8 9.7 30 189-219 56-85 (415)
199 2iut_A DNA translocase FTSK; n 97.4 0.0026 8.8E-08 66.8 15.3 74 269-354 345-420 (574)
200 3crm_A TRNA delta(2)-isopenten 97.4 0.00024 8.1E-09 69.6 6.9 29 194-222 5-33 (323)
201 3kb2_A SPBC2 prophage-derived 97.4 9.5E-05 3.2E-09 64.8 3.7 27 196-222 3-29 (173)
202 3tr0_A Guanylate kinase, GMP k 97.4 0.0001 3.4E-09 66.8 3.9 27 192-218 5-31 (205)
203 1wb9_A DNA mismatch repair pro 97.4 0.00054 1.9E-08 75.2 10.2 26 193-218 606-631 (800)
204 3j16_B RLI1P; ribosome recycli 97.3 0.00036 1.2E-08 74.3 8.5 27 194-220 378-404 (608)
205 1znw_A Guanylate kinase, GMP k 97.3 0.0001 3.6E-09 67.3 3.8 30 190-219 16-45 (207)
206 2dzn_B 26S protease regulatory 97.3 2.3E-05 7.8E-10 60.9 -0.6 46 405-450 22-69 (82)
207 2og2_A Putative signal recogni 97.3 0.0002 6.8E-09 71.3 6.0 43 190-239 153-195 (359)
208 2obl_A ESCN; ATPase, hydrolase 97.3 0.0014 4.8E-08 64.9 12.0 130 190-326 67-231 (347)
209 2ghi_A Transport protein; mult 97.3 0.00011 3.7E-09 70.0 3.7 30 189-218 41-70 (260)
210 1y63_A LMAJ004144AAA protein; 97.3 0.00014 4.8E-09 65.1 4.3 30 193-222 9-39 (184)
211 2rhm_A Putative kinase; P-loop 97.3 0.00013 4.4E-09 65.3 3.9 28 194-221 5-32 (193)
212 4f4c_A Multidrug resistance pr 97.3 0.00013 4.4E-09 84.7 4.8 43 189-238 439-481 (1321)
213 3io5_A Recombination and repai 97.3 0.00019 6.5E-09 69.9 5.1 123 194-321 29-169 (333)
214 3iij_A Coilin-interacting nucl 97.3 0.00014 4.8E-09 64.6 4.0 29 194-222 11-39 (180)
215 1via_A Shikimate kinase; struc 97.3 0.00012 4.1E-09 64.8 3.4 27 196-222 6-32 (175)
216 3cm0_A Adenylate kinase; ATP-b 97.3 0.00012 4.2E-09 65.1 3.5 28 194-221 4-31 (186)
217 1z6g_A Guanylate kinase; struc 97.3 0.00012 4.1E-09 67.6 3.5 30 189-218 18-47 (218)
218 3r20_A Cytidylate kinase; stru 97.3 0.0019 6.4E-08 60.3 11.4 28 194-221 9-36 (233)
219 2p5t_B PEZT; postsegregational 97.3 0.00034 1.2E-08 66.1 6.3 27 193-219 31-57 (253)
220 4f4c_A Multidrug resistance pr 97.3 0.00014 4.7E-09 84.5 4.3 44 189-239 1100-1143(1321)
221 2j41_A Guanylate kinase; GMP, 97.3 0.00014 4.7E-09 65.9 3.4 28 191-218 3-30 (207)
222 2orw_A Thymidine kinase; TMTK, 97.2 6.9E-05 2.4E-09 67.5 1.4 25 194-218 3-27 (184)
223 3uie_A Adenylyl-sulfate kinase 97.2 0.00017 5.8E-09 65.4 3.9 26 194-219 25-50 (200)
224 2o8b_B DNA mismatch repair pro 97.2 0.00094 3.2E-08 75.2 10.6 24 194-218 789-812 (1022)
225 1kht_A Adenylate kinase; phosp 97.2 0.00017 5.7E-09 64.4 3.7 26 194-219 3-28 (192)
226 3g5u_A MCG1178, multidrug resi 97.2 7.5E-05 2.6E-09 86.4 1.6 42 189-237 1054-1095(1284)
227 2bbs_A Cystic fibrosis transme 97.2 0.00011 3.6E-09 71.2 2.4 31 189-219 59-89 (290)
228 3cmw_A Protein RECA, recombina 97.2 0.00027 9.3E-09 82.7 6.2 84 191-281 729-824 (1706)
229 2iyv_A Shikimate kinase, SK; t 97.2 0.00017 5.9E-09 64.2 3.4 28 195-222 3-30 (184)
230 2c95_A Adenylate kinase 1; tra 97.2 0.0002 7E-09 64.1 3.9 29 194-222 9-37 (196)
231 3t61_A Gluconokinase; PSI-biol 97.2 0.00018 6.2E-09 65.2 3.5 28 194-221 18-45 (202)
232 1zuh_A Shikimate kinase; alpha 97.2 0.00022 7.4E-09 62.6 3.8 28 195-222 8-35 (168)
233 3g5u_A MCG1178, multidrug resi 97.2 0.00016 5.4E-09 83.7 3.7 44 189-239 411-454 (1284)
234 2cdn_A Adenylate kinase; phosp 97.2 0.00023 8E-09 64.4 4.1 29 194-222 20-48 (201)
235 1gvn_B Zeta; postsegregational 97.2 0.00049 1.7E-08 66.4 6.4 26 194-219 33-58 (287)
236 1ly1_A Polynucleotide kinase; 97.2 0.00019 6.6E-09 63.3 3.3 25 195-219 3-28 (181)
237 2jeo_A Uridine-cytidine kinase 97.2 0.00022 7.6E-09 66.9 3.9 33 189-221 20-52 (245)
238 1kgd_A CASK, peripheral plasma 97.2 0.00023 8E-09 63.4 3.9 26 194-219 5-30 (180)
239 2ze6_A Isopentenyl transferase 97.1 0.00025 8.5E-09 67.1 4.2 27 196-222 3-29 (253)
240 3a00_A Guanylate kinase, GMP k 97.1 0.0002 7E-09 64.1 3.3 25 195-219 2-26 (186)
241 2b8t_A Thymidine kinase; deoxy 97.1 0.00031 1.1E-08 65.2 4.5 26 194-219 12-37 (223)
242 2vli_A Antibiotic resistance p 97.1 0.00018 6E-09 63.9 2.7 29 194-222 5-33 (183)
243 1ewq_A DNA mismatch repair pro 97.1 0.00061 2.1E-08 74.4 7.5 25 194-218 576-600 (765)
244 3c8u_A Fructokinase; YP_612366 97.1 0.00024 8.4E-09 64.8 3.6 27 193-219 21-47 (208)
245 3sr0_A Adenylate kinase; phosp 97.1 0.00064 2.2E-08 62.3 6.4 26 196-221 2-27 (206)
246 2bbw_A Adenylate kinase 4, AK4 97.1 0.00026 8.9E-09 66.4 3.9 27 194-220 27-53 (246)
247 2v9p_A Replication protein E1; 97.1 0.00025 8.6E-09 69.0 3.8 29 190-218 122-150 (305)
248 1e6c_A Shikimate kinase; phosp 97.1 0.00025 8.5E-09 62.3 3.4 28 195-222 3-30 (173)
249 1aky_A Adenylate kinase; ATP:A 97.1 0.00029 9.9E-09 64.8 4.0 28 194-221 4-31 (220)
250 3tau_A Guanylate kinase, GMP k 97.1 0.00025 8.7E-09 64.8 3.6 27 193-219 7-33 (208)
251 3lw7_A Adenylate kinase relate 97.1 0.00026 9E-09 61.8 3.5 25 196-221 3-27 (179)
252 3nwj_A ATSK2; P loop, shikimat 97.1 0.0002 6.7E-09 67.8 2.8 29 194-222 48-76 (250)
253 3lnc_A Guanylate kinase, GMP k 97.1 0.00018 6E-09 66.9 2.4 30 189-218 22-52 (231)
254 1lvg_A Guanylate kinase, GMP k 97.1 0.00025 8.5E-09 64.4 3.4 26 194-219 4-29 (198)
255 1zd8_A GTP:AMP phosphotransfer 97.1 0.00027 9.3E-09 65.4 3.6 28 194-221 7-34 (227)
256 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00031 1.1E-08 69.5 4.2 27 196-222 26-52 (359)
257 1cke_A CK, MSSA, protein (cyti 97.1 0.00031 1.1E-08 64.6 3.9 29 194-222 5-33 (227)
258 1qf9_A UMP/CMP kinase, protein 97.1 0.00032 1.1E-08 62.5 3.9 28 194-221 6-33 (194)
259 2bdt_A BH3686; alpha-beta prot 97.1 0.00027 9.1E-09 63.3 3.2 25 194-218 2-26 (189)
260 1zak_A Adenylate kinase; ATP:A 97.1 0.00029 9.9E-09 64.9 3.5 28 194-221 5-32 (222)
261 1ukz_A Uridylate kinase; trans 97.0 0.0004 1.4E-08 62.8 4.4 28 194-221 15-42 (203)
262 3asz_A Uridine kinase; cytidin 97.0 0.00032 1.1E-08 63.9 3.7 26 194-219 6-31 (211)
263 2pez_A Bifunctional 3'-phospho 97.0 0.00036 1.2E-08 61.9 3.9 25 194-218 5-29 (179)
264 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00051 1.7E-08 65.1 5.0 25 194-218 4-28 (260)
265 2qor_A Guanylate kinase; phosp 97.0 0.00035 1.2E-08 63.5 3.7 28 192-219 10-37 (204)
266 1s96_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 64.4 3.9 28 192-219 14-41 (219)
267 2vf7_A UVRA2, excinuclease ABC 97.0 0.00075 2.6E-08 74.3 6.7 30 189-218 518-548 (842)
268 2plr_A DTMP kinase, probable t 97.0 0.0004 1.4E-08 62.9 3.9 27 194-220 4-30 (213)
269 1svm_A Large T antigen; AAA+ f 97.0 0.00037 1.3E-08 69.9 3.9 29 191-219 166-194 (377)
270 1nks_A Adenylate kinase; therm 97.0 0.00033 1.1E-08 62.4 3.3 24 196-219 3-26 (194)
271 4e22_A Cytidylate kinase; P-lo 97.0 0.00045 1.5E-08 65.2 4.1 29 194-222 27-55 (252)
272 1z6t_A APAF-1, apoptotic prote 97.0 0.0012 4.2E-08 69.8 8.0 47 159-217 124-170 (591)
273 1rj9_A FTSY, signal recognitio 97.0 0.00054 1.9E-08 66.6 4.7 40 193-239 101-140 (304)
274 1ak2_A Adenylate kinase isoenz 97.0 0.00047 1.6E-08 64.1 4.1 29 194-222 16-44 (233)
275 2pt5_A Shikimate kinase, SK; a 97.0 0.00045 1.5E-08 60.3 3.7 27 196-222 2-28 (168)
276 1tf7_A KAIC; homohexamer, hexa 97.0 0.0015 5.2E-08 68.4 8.3 30 190-219 277-306 (525)
277 3dl0_A Adenylate kinase; phosp 96.9 0.00043 1.5E-08 63.3 3.6 25 197-221 3-27 (216)
278 3fb4_A Adenylate kinase; psych 96.9 0.00044 1.5E-08 63.2 3.7 25 197-221 3-27 (216)
279 3be4_A Adenylate kinase; malar 96.9 0.00044 1.5E-08 63.5 3.7 29 194-222 5-33 (217)
280 2wwf_A Thymidilate kinase, put 96.9 0.00043 1.5E-08 62.9 3.6 30 193-222 9-38 (212)
281 3ice_A Transcription terminati 96.9 0.0021 7.1E-08 64.2 8.7 130 190-324 170-325 (422)
282 3pih_A Uvrabc system protein A 96.9 0.0021 7.2E-08 71.3 9.6 42 295-342 840-881 (916)
283 3tlx_A Adenylate kinase 2; str 96.9 0.00049 1.7E-08 64.5 4.0 28 194-221 29-56 (243)
284 2r6a_A DNAB helicase, replicat 96.9 0.0013 4.4E-08 67.6 7.4 29 191-219 200-228 (454)
285 3b85_A Phosphate starvation-in 96.9 0.00028 9.6E-09 64.8 2.2 24 194-217 22-45 (208)
286 2jaq_A Deoxyguanosine kinase; 96.9 0.00051 1.8E-08 61.8 3.7 27 196-222 2-28 (205)
287 2i3b_A HCR-ntpase, human cance 96.9 0.00048 1.7E-08 62.2 3.5 25 195-219 2-26 (189)
288 2v54_A DTMP kinase, thymidylat 96.9 0.00058 2E-08 61.6 4.0 29 194-222 4-33 (204)
289 3foz_A TRNA delta(2)-isopenten 96.9 0.0017 5.8E-08 63.0 7.4 27 194-220 10-36 (316)
290 3bh0_A DNAB-like replicative h 96.9 0.0028 9.6E-08 61.8 9.1 26 194-219 68-93 (315)
291 3e70_C DPA, signal recognition 96.9 0.0012 4.1E-08 64.9 6.2 41 192-239 127-167 (328)
292 2yvu_A Probable adenylyl-sulfa 96.9 0.00072 2.5E-08 60.3 4.2 28 193-220 12-39 (186)
293 2gza_A Type IV secretion syste 96.8 0.00043 1.5E-08 69.0 3.0 37 193-236 174-210 (361)
294 3aez_A Pantothenate kinase; tr 96.8 0.00064 2.2E-08 66.4 4.1 30 191-220 87-116 (312)
295 1nn5_A Similar to deoxythymidy 96.8 0.00059 2E-08 62.0 3.6 29 194-222 9-37 (215)
296 1g5t_A COB(I)alamin adenosyltr 96.8 0.0046 1.6E-07 55.9 9.4 127 195-343 29-179 (196)
297 2qt1_A Nicotinamide riboside k 96.8 0.0005 1.7E-08 62.5 3.0 29 190-218 17-45 (207)
298 3e1s_A Exodeoxyribonuclease V, 96.8 0.00032 1.1E-08 74.3 1.7 26 194-219 204-229 (574)
299 2f6r_A COA synthase, bifunctio 96.8 0.007 2.4E-07 58.0 11.0 27 194-221 75-101 (281)
300 1m7g_A Adenylylsulfate kinase; 96.8 0.00073 2.5E-08 61.7 3.9 26 194-219 25-50 (211)
301 3ney_A 55 kDa erythrocyte memb 96.8 0.00079 2.7E-08 61.2 3.9 27 193-219 18-44 (197)
302 3exa_A TRNA delta(2)-isopenten 96.8 0.0019 6.4E-08 62.8 6.7 27 194-220 3-29 (322)
303 1cr0_A DNA primase/helicase; R 96.8 0.00082 2.8E-08 64.7 4.0 29 191-219 32-60 (296)
304 1e4v_A Adenylate kinase; trans 96.7 0.00073 2.5E-08 61.8 3.5 25 197-221 3-27 (214)
305 1uj2_A Uridine-cytidine kinase 96.7 0.0014 4.7E-08 61.7 5.4 45 195-240 23-67 (252)
306 4i1u_A Dephospho-COA kinase; s 96.7 0.0045 1.5E-07 56.7 8.6 27 195-222 10-36 (210)
307 2xb4_A Adenylate kinase; ATP-b 96.7 0.00082 2.8E-08 62.1 3.7 25 196-220 2-26 (223)
308 2yl4_A ATP-binding cassette SU 96.7 0.00058 2E-08 72.7 2.9 44 189-239 365-408 (595)
309 2oap_1 GSPE-2, type II secreti 96.7 0.00063 2.2E-08 71.0 3.0 37 194-237 260-296 (511)
310 2pbr_A DTMP kinase, thymidylat 96.7 0.00098 3.3E-08 59.4 3.7 23 196-218 2-24 (195)
311 2dpy_A FLII, flagellum-specifi 96.7 0.0015 5.2E-08 66.8 5.6 41 190-237 153-193 (438)
312 2grj_A Dephospho-COA kinase; T 96.7 0.0011 3.9E-08 59.9 4.1 28 195-222 13-40 (192)
313 2z0h_A DTMP kinase, thymidylat 96.7 0.001 3.4E-08 59.6 3.7 23 196-218 2-24 (197)
314 3gmt_A Adenylate kinase; ssgci 96.7 0.0076 2.6E-07 55.9 9.7 27 196-222 10-36 (230)
315 3ake_A Cytidylate kinase; CMP 96.6 0.001 3.6E-08 60.0 3.7 27 196-222 4-30 (208)
316 2q6t_A DNAB replication FORK h 96.6 0.0021 7.2E-08 65.8 6.3 27 193-219 199-225 (444)
317 1rz3_A Hypothetical protein rb 96.6 0.0012 4E-08 59.9 3.8 26 194-219 22-47 (201)
318 3kta_A Chromosome segregation 96.6 0.0012 4E-08 58.6 3.8 24 196-219 28-51 (182)
319 1lw7_A Transcriptional regulat 96.6 0.0012 4E-08 65.8 4.2 33 188-220 162-196 (365)
320 1q3t_A Cytidylate kinase; nucl 96.6 0.0013 4.3E-08 61.3 4.1 29 194-222 16-44 (236)
321 2a5y_B CED-4; apoptosis; HET: 96.6 0.0087 3E-07 62.9 11.0 44 162-216 131-174 (549)
322 2gxq_A Heat resistant RNA depe 96.6 0.0087 3E-07 53.7 9.6 25 194-218 38-63 (207)
323 2r6f_A Excinuclease ABC subuni 96.6 0.0052 1.8E-07 68.1 9.2 27 189-215 645-671 (972)
324 2ygr_A Uvrabc system protein A 96.5 0.0055 1.9E-07 68.2 9.2 27 189-215 663-689 (993)
325 3llm_A ATP-dependent RNA helic 96.5 0.0095 3.2E-07 55.2 9.6 23 194-216 76-98 (235)
326 3kl4_A SRP54, signal recogniti 96.5 0.0033 1.1E-07 64.0 6.9 28 193-220 96-123 (433)
327 3euj_A Chromosome partition pr 96.5 0.0011 3.8E-08 68.4 3.3 30 189-219 25-54 (483)
328 2ewv_A Twitching motility prot 96.5 0.0014 4.8E-08 65.6 4.0 28 193-220 135-162 (372)
329 1vht_A Dephospho-COA kinase; s 96.5 0.0015 5.1E-08 59.8 3.9 27 194-221 4-30 (218)
330 1sky_E F1-ATPase, F1-ATP synth 96.5 0.0029 1E-07 64.8 6.4 28 193-220 150-177 (473)
331 1uf9_A TT1252 protein; P-loop, 96.5 0.0013 4.5E-08 59.1 3.4 28 194-222 8-35 (203)
332 4eaq_A DTMP kinase, thymidylat 96.5 0.0016 5.5E-08 60.5 4.0 27 193-219 25-51 (229)
333 3sop_A Neuronal-specific septi 96.5 0.0013 4.5E-08 62.7 3.5 24 196-219 4-27 (270)
334 3a8t_A Adenylate isopentenyltr 96.5 0.0014 4.9E-08 64.3 3.8 28 194-221 40-67 (339)
335 1ex7_A Guanylate kinase; subst 96.5 0.0014 4.9E-08 58.9 3.5 25 195-219 2-26 (186)
336 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.001 3.4E-08 68.5 2.8 28 191-218 135-162 (460)
337 3dm5_A SRP54, signal recogniti 96.5 0.012 4.1E-07 59.9 10.6 26 194-219 100-125 (443)
338 1g41_A Heat shock protein HSLU 96.5 0.0074 2.5E-07 61.5 9.1 83 268-354 251-346 (444)
339 1sq5_A Pantothenate kinase; P- 96.5 0.0015 5.2E-08 63.5 3.8 27 193-219 79-105 (308)
340 1p9r_A General secretion pathw 96.4 0.0023 7.7E-08 65.0 5.0 26 194-219 167-192 (418)
341 3eph_A TRNA isopentenyltransfe 96.4 0.0049 1.7E-07 61.9 7.3 26 195-220 3-28 (409)
342 1zu4_A FTSY; GTPase, signal re 96.4 0.0036 1.2E-07 61.2 6.2 30 190-219 101-130 (320)
343 1w4r_A Thymidine kinase; type 96.4 0.0025 8.5E-08 57.6 4.4 25 194-218 20-45 (195)
344 1xx6_A Thymidine kinase; NESG, 96.4 0.0049 1.7E-07 55.6 6.3 25 194-218 8-32 (191)
345 2qm8_A GTPase/ATPase; G protei 96.3 0.0021 7.2E-08 63.4 3.9 30 190-219 51-80 (337)
346 3szr_A Interferon-induced GTP- 96.3 0.013 4.5E-07 62.3 10.1 22 197-218 48-69 (608)
347 1ltq_A Polynucleotide kinase; 96.3 0.0023 8E-08 61.5 3.7 24 195-218 3-26 (301)
348 2h92_A Cytidylate kinase; ross 96.3 0.0024 8.1E-08 58.3 3.6 28 195-222 4-31 (219)
349 3sfz_A APAF-1, apoptotic pepti 96.2 0.0047 1.6E-07 70.7 6.8 48 159-218 124-171 (1249)
350 1vma_A Cell division protein F 96.2 0.003 1E-07 61.4 4.2 29 191-219 101-129 (306)
351 1odf_A YGR205W, hypothetical 3 96.2 0.0071 2.4E-07 58.3 6.8 27 194-220 31-57 (290)
352 3tqc_A Pantothenate kinase; bi 96.2 0.0029 9.8E-08 61.9 4.0 26 194-219 92-117 (321)
353 1gtv_A TMK, thymidylate kinase 96.2 0.0013 4.6E-08 59.6 1.4 25 196-220 2-26 (214)
354 2f1r_A Molybdopterin-guanine d 96.2 0.0015 5E-08 58.0 1.6 41 195-239 3-43 (171)
355 1q57_A DNA primase/helicase; d 96.2 0.006 2.1E-07 63.4 6.5 29 191-219 239-267 (503)
356 3zvl_A Bifunctional polynucleo 96.1 0.0026 8.8E-08 64.6 3.5 27 194-220 258-284 (416)
357 3d3q_A TRNA delta(2)-isopenten 96.1 0.0037 1.3E-07 61.5 4.4 26 195-220 8-33 (340)
358 2qmh_A HPR kinase/phosphorylas 96.1 0.0025 8.7E-08 57.8 2.7 26 194-219 34-59 (205)
359 2px0_A Flagellar biosynthesis 96.0 0.0035 1.2E-07 60.6 3.8 27 193-219 104-130 (296)
360 3cr8_A Sulfate adenylyltranfer 96.0 0.0026 9E-08 66.8 3.1 28 192-219 367-394 (552)
361 1qde_A EIF4A, translation init 96.0 0.029 9.9E-07 51.0 9.8 25 194-218 51-76 (224)
362 2iw3_A Elongation factor 3A; a 96.0 0.0025 8.5E-08 71.0 2.8 41 189-236 694-734 (986)
363 1vt4_I APAF-1 related killer D 96.0 0.019 6.6E-07 64.2 9.8 43 162-217 131-173 (1221)
364 2qag_B Septin-6, protein NEDD5 95.9 0.0028 9.6E-08 64.3 2.6 28 191-218 37-66 (427)
365 3bgw_A DNAB-like replicative h 95.9 0.013 4.4E-07 60.0 7.5 27 193-219 196-222 (444)
366 3b6e_A Interferon-induced heli 95.9 0.0093 3.2E-07 53.7 5.7 24 195-218 49-72 (216)
367 2vp4_A Deoxynucleoside kinase; 95.8 0.0028 9.4E-08 58.7 2.0 27 191-217 17-43 (230)
368 3l0o_A Transcription terminati 95.8 0.047 1.6E-06 54.5 10.7 29 191-219 172-200 (427)
369 3fdi_A Uncharacterized protein 95.8 0.0055 1.9E-07 55.7 3.7 28 195-222 7-34 (201)
370 1qhl_A Protein (cell division 95.8 0.0017 5.8E-08 60.4 0.3 23 197-219 30-52 (227)
371 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0061 2.1E-07 52.5 3.8 24 195-218 24-47 (149)
372 1pui_A ENGB, probable GTP-bind 95.7 0.0022 7.4E-08 57.9 0.7 30 189-218 21-50 (210)
373 2fz4_A DNA repair protein RAD2 95.7 0.0062 2.1E-07 56.7 3.6 25 195-219 109-133 (237)
374 1np6_A Molybdopterin-guanine d 95.7 0.0069 2.4E-07 53.8 3.7 25 195-219 7-31 (174)
375 1oix_A RAS-related protein RAB 95.6 0.0056 1.9E-07 54.6 3.0 24 195-218 30-53 (191)
376 2f9l_A RAB11B, member RAS onco 95.6 0.0064 2.2E-07 54.4 3.4 23 196-218 7-29 (199)
377 3tqf_A HPR(Ser) kinase; transf 95.6 0.0064 2.2E-07 53.8 3.2 24 194-217 16-39 (181)
378 1xjc_A MOBB protein homolog; s 95.6 0.0077 2.6E-07 53.2 3.7 25 195-219 5-29 (169)
379 2iw3_A Elongation factor 3A; a 95.6 0.0056 1.9E-07 68.2 3.4 28 189-216 456-483 (986)
380 4edh_A DTMP kinase, thymidylat 95.5 0.008 2.7E-07 55.1 3.8 27 194-220 6-32 (213)
381 2zts_A Putative uncharacterize 95.5 0.0077 2.6E-07 55.7 3.8 25 193-217 29-53 (251)
382 2ocp_A DGK, deoxyguanosine kin 95.5 0.0073 2.5E-07 56.1 3.5 26 194-219 2-27 (241)
383 1hv8_A Putative ATP-dependent 95.5 0.0036 1.2E-07 61.2 1.4 23 195-217 45-67 (367)
384 1vec_A ATP-dependent RNA helic 95.5 0.016 5.3E-07 52.0 5.6 19 194-212 40-58 (206)
385 3v9p_A DTMP kinase, thymidylat 95.5 0.0073 2.5E-07 56.0 3.3 28 194-221 25-52 (227)
386 1u0l_A Probable GTPase ENGC; p 95.5 0.0045 1.6E-07 59.9 1.9 27 193-219 168-194 (301)
387 3fe2_A Probable ATP-dependent 95.5 0.059 2E-06 49.8 9.6 18 194-211 66-83 (242)
388 1a7j_A Phosphoribulokinase; tr 95.4 0.0046 1.6E-07 59.5 1.9 26 194-219 5-30 (290)
389 3fmo_B ATP-dependent RNA helic 95.4 0.066 2.2E-06 51.5 10.1 18 194-211 131-148 (300)
390 4b3f_X DNA-binding protein smu 95.4 0.012 4.1E-07 63.1 5.3 24 195-218 206-229 (646)
391 2xau_A PRE-mRNA-splicing facto 95.4 0.01 3.5E-07 65.0 4.7 25 194-218 109-133 (773)
392 3dkp_A Probable ATP-dependent 95.4 0.033 1.1E-06 51.5 7.5 18 194-211 66-83 (245)
393 2axn_A 6-phosphofructo-2-kinas 95.4 0.0086 3E-07 62.5 3.8 29 194-222 35-63 (520)
394 1tq4_A IIGP1, interferon-induc 95.4 0.0047 1.6E-07 62.5 1.7 24 195-218 70-93 (413)
395 1x6v_B Bifunctional 3'-phospho 95.3 0.012 3.9E-07 62.7 4.6 29 194-222 52-83 (630)
396 3tmk_A Thymidylate kinase; pho 95.3 0.01 3.6E-07 54.5 3.8 27 194-220 5-31 (216)
397 1t6n_A Probable ATP-dependent 95.3 0.04 1.4E-06 49.9 7.8 22 195-216 52-73 (220)
398 3ber_A Probable ATP-dependent 95.3 0.072 2.5E-06 49.6 9.6 18 194-211 80-97 (249)
399 3qf7_A RAD50; ABC-ATPase, ATPa 95.3 0.0092 3.2E-07 59.4 3.6 23 196-218 25-47 (365)
400 3lv8_A DTMP kinase, thymidylat 95.3 0.01 3.5E-07 55.4 3.6 27 194-220 27-53 (236)
401 2rcn_A Probable GTPase ENGC; Y 95.3 0.0071 2.4E-07 60.0 2.6 26 194-219 215-240 (358)
402 3bor_A Human initiation factor 95.3 0.015 5.1E-07 53.8 4.7 18 194-211 67-84 (237)
403 3iuy_A Probable ATP-dependent 95.2 0.03 1E-06 51.1 6.8 19 194-212 57-75 (228)
404 3qks_A DNA double-strand break 95.2 0.012 4E-07 53.5 3.8 25 195-219 24-48 (203)
405 3hdt_A Putative kinase; struct 95.2 0.012 4E-07 54.4 3.7 29 194-222 14-42 (223)
406 1ni3_A YCHF GTPase, YCHF GTP-b 95.2 0.02 6.7E-07 57.5 5.5 45 192-236 18-67 (392)
407 2ged_A SR-beta, signal recogni 95.2 0.016 5.6E-07 51.1 4.5 24 195-218 49-72 (193)
408 4tmk_A Protein (thymidylate ki 95.1 0.013 4.4E-07 53.8 3.7 27 194-220 3-29 (213)
409 1t9h_A YLOQ, probable GTPase E 95.1 0.0038 1.3E-07 60.6 0.1 30 190-219 169-198 (307)
410 1w1w_A Structural maintenance 95.1 0.012 4.3E-07 59.7 3.9 28 193-220 25-52 (430)
411 2o5v_A DNA replication and rep 95.1 0.012 3.9E-07 58.6 3.6 23 196-218 28-50 (359)
412 3ld9_A DTMP kinase, thymidylat 95.1 0.014 4.7E-07 54.0 3.8 27 194-220 21-47 (223)
413 1p5z_B DCK, deoxycytidine kina 95.1 0.0057 2E-07 57.7 1.2 25 194-218 24-48 (263)
414 1q0u_A Bstdead; DEAD protein, 95.0 0.032 1.1E-06 50.6 6.2 18 194-211 41-58 (219)
415 1ls1_A Signal recognition part 95.0 0.014 5E-07 56.2 4.0 27 193-219 97-123 (295)
416 3upu_A ATP-dependent DNA helic 95.0 0.014 4.7E-07 59.9 4.1 24 196-219 47-70 (459)
417 2yv5_A YJEQ protein; hydrolase 94.9 0.013 4.5E-07 56.7 3.4 26 193-219 164-189 (302)
418 2dyk_A GTP-binding protein; GT 94.9 0.015 5.2E-07 49.4 3.4 23 196-218 3-25 (161)
419 2wji_A Ferrous iron transport 94.9 0.011 3.6E-07 51.3 2.4 23 195-217 4-26 (165)
420 3pey_A ATP-dependent RNA helic 94.9 0.048 1.6E-06 53.7 7.5 19 195-213 45-63 (395)
421 2oxc_A Probable ATP-dependent 94.8 0.16 5.5E-06 46.4 10.4 18 194-211 61-78 (230)
422 2gj8_A MNME, tRNA modification 94.8 0.013 4.6E-07 51.1 2.7 25 194-218 4-28 (172)
423 1g8f_A Sulfate adenylyltransfe 94.8 0.015 5.1E-07 60.4 3.5 27 194-220 395-421 (511)
424 3ly5_A ATP-dependent RNA helic 94.7 0.023 7.9E-07 53.5 4.4 18 195-212 92-109 (262)
425 1z2a_A RAS-related protein RAB 94.7 0.018 6.2E-07 49.2 3.4 23 196-218 7-29 (168)
426 1bif_A 6-phosphofructo-2-kinas 94.7 0.017 5.7E-07 59.5 3.7 29 194-222 39-67 (469)
427 2pl3_A Probable ATP-dependent 94.7 0.08 2.7E-06 48.5 8.0 19 194-212 62-80 (236)
428 2zej_A Dardarin, leucine-rich 94.7 0.011 3.7E-07 52.2 2.0 22 196-217 4-25 (184)
429 2p67_A LAO/AO transport system 94.7 0.02 6.7E-07 56.4 3.9 27 193-219 55-81 (341)
430 2www_A Methylmalonic aciduria 94.6 0.02 7E-07 56.5 4.0 25 194-218 74-98 (349)
431 1kao_A RAP2A; GTP-binding prot 94.6 0.02 7E-07 48.7 3.5 23 196-218 5-27 (167)
432 2wjg_A FEOB, ferrous iron tran 94.6 0.017 5.7E-07 50.8 2.9 23 195-217 8-30 (188)
433 1nrj_B SR-beta, signal recogni 94.5 0.02 6.9E-07 51.7 3.4 24 195-218 13-36 (218)
434 2ce2_X GTPase HRAS; signaling 94.5 0.02 6.7E-07 48.6 3.2 23 196-218 5-27 (166)
435 3qkt_A DNA double-strand break 94.5 0.021 7.2E-07 56.1 3.8 25 195-219 24-48 (339)
436 3eiq_A Eukaryotic initiation f 94.5 0.035 1.2E-06 55.2 5.4 18 194-211 77-94 (414)
437 1u8z_A RAS-related protein RAL 94.5 0.022 7.6E-07 48.5 3.4 24 195-218 5-28 (168)
438 2r8r_A Sensor protein; KDPD, P 94.5 0.023 7.9E-07 52.5 3.6 24 196-219 8-31 (228)
439 1z0j_A RAB-22, RAS-related pro 94.5 0.023 7.9E-07 48.6 3.5 23 196-218 8-30 (170)
440 1nij_A Hypothetical protein YJ 94.4 0.015 5.3E-07 56.5 2.6 24 195-218 5-28 (318)
441 1w36_D RECD, exodeoxyribonucle 94.4 0.021 7.3E-07 60.7 3.8 26 194-219 164-189 (608)
442 4hlc_A DTMP kinase, thymidylat 94.4 0.024 8.3E-07 51.5 3.7 26 194-219 2-27 (205)
443 1e69_A Chromosome segregation 94.4 0.016 5.4E-07 56.5 2.6 23 196-218 26-48 (322)
444 1ek0_A Protein (GTP-binding pr 94.4 0.023 7.9E-07 48.6 3.4 23 196-218 5-27 (170)
445 2ffh_A Protein (FFH); SRP54, s 94.4 0.041 1.4E-06 55.8 5.6 27 193-219 97-123 (425)
446 1wms_A RAB-9, RAB9, RAS-relate 94.4 0.024 8.2E-07 49.0 3.5 23 195-217 8-30 (177)
447 1m8p_A Sulfate adenylyltransfe 94.4 0.022 7.6E-07 60.1 3.7 26 194-219 396-421 (573)
448 1ky3_A GTP-binding protein YPT 94.4 0.025 8.4E-07 49.1 3.5 24 195-218 9-32 (182)
449 2gk6_A Regulator of nonsense t 94.3 0.023 7.8E-07 60.7 3.8 24 195-218 196-219 (624)
450 1j8m_F SRP54, signal recogniti 94.3 0.021 7.2E-07 55.1 3.2 26 194-219 98-123 (297)
451 1g16_A RAS-related protein SEC 94.3 0.023 7.9E-07 48.6 3.2 22 196-217 5-26 (170)
452 1z08_A RAS-related protein RAB 94.3 0.025 8.7E-07 48.4 3.4 24 195-218 7-30 (170)
453 4a1f_A DNAB helicase, replicat 94.2 0.027 9.3E-07 55.3 3.8 27 193-219 45-71 (338)
454 1c9k_A COBU, adenosylcobinamid 94.2 0.022 7.7E-07 50.7 2.9 21 197-217 2-22 (180)
455 2lkc_A Translation initiation 94.2 0.027 9.2E-07 48.8 3.4 24 194-217 8-31 (178)
456 2nzj_A GTP-binding protein REM 94.2 0.024 8.1E-07 48.9 3.1 22 196-217 6-27 (175)
457 1c1y_A RAS-related protein RAP 94.2 0.027 9.3E-07 48.0 3.4 22 196-217 5-26 (167)
458 2erx_A GTP-binding protein DI- 94.2 0.023 8E-07 48.6 2.9 22 196-217 5-26 (172)
459 2z0m_A 337AA long hypothetical 94.2 0.1 3.5E-06 50.1 7.8 24 194-217 31-54 (337)
460 1r2q_A RAS-related protein RAB 94.2 0.028 9.5E-07 48.0 3.4 22 196-217 8-29 (170)
461 1s2m_A Putative ATP-dependent 94.2 0.075 2.6E-06 52.6 7.1 21 194-214 58-78 (400)
462 2wsm_A Hydrogenase expression/ 94.1 0.027 9.4E-07 51.0 3.4 25 195-219 31-55 (221)
463 1r8s_A ADP-ribosylation factor 94.1 0.027 9.3E-07 48.0 3.2 22 197-218 3-24 (164)
464 2p6r_A Afuhel308 helicase; pro 94.1 0.044 1.5E-06 59.2 5.5 19 194-212 40-58 (702)
465 2v3c_C SRP54, signal recogniti 94.1 0.02 6.8E-07 58.3 2.6 26 194-219 99-124 (432)
466 3bc1_A RAS-related protein RAB 94.1 0.03 1E-06 49.1 3.4 23 195-217 12-34 (195)
467 3q85_A GTP-binding protein REM 94.0 0.027 9.2E-07 48.3 3.0 21 196-216 4-24 (169)
468 1upt_A ARL1, ADP-ribosylation 94.0 0.036 1.2E-06 47.5 3.8 24 194-217 7-30 (171)
469 3fmp_B ATP-dependent RNA helic 94.0 0.15 5.3E-06 52.0 9.2 18 194-211 131-148 (479)
470 4dsu_A GTPase KRAS, isoform 2B 94.0 0.03 1E-06 48.9 3.2 23 196-218 6-28 (189)
471 2j0s_A ATP-dependent RNA helic 94.0 0.058 2E-06 53.7 5.8 20 194-213 74-93 (410)
472 2y8e_A RAB-protein 6, GH09086P 94.0 0.027 9.3E-07 48.6 3.0 22 196-217 16-37 (179)
473 2hxs_A RAB-26, RAS-related pro 94.0 0.026 8.9E-07 48.8 2.8 23 195-217 7-29 (178)
474 3clv_A RAB5 protein, putative; 94.0 0.03 1E-06 49.4 3.2 24 195-218 8-31 (208)
475 2fn4_A P23, RAS-related protei 94.0 0.03 1E-06 48.4 3.2 23 195-217 10-32 (181)
476 3q72_A GTP-binding protein RAD 94.0 0.025 8.5E-07 48.4 2.6 21 196-216 4-24 (166)
477 2oil_A CATX-8, RAS-related pro 94.0 0.03 1E-06 49.5 3.2 24 195-218 26-49 (193)
478 1z0f_A RAB14, member RAS oncog 93.9 0.033 1.1E-06 48.1 3.4 24 195-218 16-39 (179)
479 3con_A GTPase NRAS; structural 93.9 0.033 1.1E-06 49.0 3.4 24 195-218 22-45 (190)
480 2qnr_A Septin-2, protein NEDD5 93.9 0.018 6.1E-07 55.7 1.7 22 196-217 20-41 (301)
481 1m7b_A RND3/RHOE small GTP-bin 93.9 0.029 1E-06 49.2 3.0 23 195-217 8-30 (184)
482 2a9k_A RAS-related protein RAL 93.9 0.035 1.2E-06 48.3 3.4 24 195-218 19-42 (187)
483 2efe_B Small GTP-binding prote 93.9 0.033 1.1E-06 48.4 3.2 23 195-217 13-35 (181)
484 3k53_A Ferrous iron transport 93.8 0.026 8.7E-07 53.4 2.7 24 195-218 4-27 (271)
485 2bme_A RAB4A, RAS-related prot 93.8 0.031 1.1E-06 48.8 3.0 24 195-218 11-34 (186)
486 4ag6_A VIRB4 ATPase, type IV s 93.8 0.036 1.2E-06 55.4 3.8 25 194-218 35-59 (392)
487 2gks_A Bifunctional SAT/APS ki 93.7 0.035 1.2E-06 58.2 3.7 27 194-220 372-398 (546)
488 1fuu_A Yeast initiation factor 93.7 0.13 4.4E-06 50.6 7.7 17 195-211 59-75 (394)
489 3tw8_B RAS-related protein RAB 93.7 0.032 1.1E-06 48.3 2.9 23 195-217 10-32 (181)
490 3kkq_A RAS-related protein M-R 93.7 0.038 1.3E-06 48.2 3.4 23 195-217 19-41 (183)
491 3t1o_A Gliding protein MGLA; G 93.7 0.035 1.2E-06 48.8 3.2 25 195-219 15-39 (198)
492 2g6b_A RAS-related protein RAB 93.7 0.038 1.3E-06 47.8 3.4 24 195-218 11-34 (180)
493 1m2o_B GTP-binding protein SAR 93.7 0.033 1.1E-06 49.4 3.0 23 195-217 24-46 (190)
494 2gf9_A RAS-related protein RAB 93.6 0.037 1.3E-06 48.7 3.2 24 195-218 23-46 (189)
495 1svi_A GTP-binding protein YSX 93.6 0.029 9.8E-07 49.5 2.4 23 195-217 24-46 (195)
496 3ihw_A Centg3; RAS, centaurin, 93.6 0.038 1.3E-06 48.7 3.2 23 195-217 21-43 (184)
497 1mh1_A RAC1; GTP-binding, GTPa 93.6 0.042 1.4E-06 47.8 3.4 22 196-217 7-28 (186)
498 2wjy_A Regulator of nonsense t 93.5 0.039 1.3E-06 60.5 3.8 25 194-218 371-395 (800)
499 3tkl_A RAS-related protein RAB 93.5 0.039 1.3E-06 48.6 3.2 24 195-218 17-40 (196)
500 3fht_A ATP-dependent RNA helic 93.5 0.11 3.8E-06 51.4 6.8 18 194-211 64-81 (412)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-38 Score=320.09 Aligned_cols=242 Identities=26% Similarity=0.383 Sum_probs=208.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH----HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceE
Q 012655 156 GMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (459)
-.|+++.|.+++|+.|.+.+..|+ .|...|+.| ++++|||||||||||++|+++|++++.+|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~-----prGvLL~GPPGTGKTllAkAiA~e~~~~f--------- 210 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ-----PKGVILYGPPGTGKTLLARAVAHHTDCKF--------- 210 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-----CCCEEEESCSSSSHHHHHHHHHHHHTCEE---------
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCceEEeCCCCCCHHHHHHHHHHhhCCCc---------
Confidence 359999999999999998887655 566678876 89999999999999999999999998777
Q ss_pred EEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
+.++++++.++|.|++.+.++.+|..++. .+|+||||||+|.++.+|.....++ .....++++.+|+.||++..
T Consensus 211 ~~v~~s~l~sk~vGese~~vr~lF~~Ar~-----~aP~IIFiDEiDai~~~R~~~~~~~-~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 211 IRVSGAELVQKYIGEGSRMVRELFVMARE-----HAPSIIFMDEIDSIGSTRVEGSGGG-DSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp EEEEGGGGSCSSTTHHHHHHHHHHHHHHH-----TCSEEEEEESSSCCTTSCSCSSSGG-GGHHHHHHHHHHHHHHTTTC
T ss_pred eEEEhHHhhccccchHHHHHHHHHHHHHH-----hCCceEeeecchhhccCCCCCCCCC-cHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999999987 4899999999999998775432222 12446789999999999988
Q ss_pred CCCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCc
Q 012655 312 SPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (459)
Q Consensus 312 ~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 389 (459)
..+++||+|||.++.||+|+++ |||..++++.|+.++|.+||+.++++.. ...+
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~---------l~~d--------------- 340 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN---------LTRG--------------- 340 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB---------CCSS---------------
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC---------CCcc---------------
Confidence 8999999999999999999995 9999999999999999999998876531 0000
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHh
Q 012655 390 PDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKER 454 (459)
Q Consensus 390 ~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~ 454 (459)
..+..+|+.|+||||+||+.+|..| .|...++..++.+||..|+.+...+..
T Consensus 341 -------------vdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~ 394 (405)
T 4b4t_J 341 -------------INLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQ 394 (405)
T ss_dssp -------------CCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHT
T ss_pred -------------CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCccc
Confidence 0277899999999999999999998 666778889999999999998876543
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-37 Score=312.46 Aligned_cols=245 Identities=24% Similarity=0.339 Sum_probs=211.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH----HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceE
Q 012655 156 GMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (459)
-.|+++.|.+++|+.|.+.+..++ .|...|+.+ +++||||||||||||++|+++|++++.+|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~-----prGvLLyGPPGTGKTlLAkAiA~e~~~~f--------- 244 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKP-----PKGVILYGAPGTGKTLLAKAVANQTSATF--------- 244 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC-----CSEEEEESSTTTTHHHHHHHHHHHHTCEE---------
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCCCceECCCCchHHHHHHHHHHHhCCCE---------
Confidence 359999999999999999887654 677778776 89999999999999999999999998777
Q ss_pred EEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
+.+++.++.++|++++.+.++.+|..++. .+|+||||||+|.++..|....++++ ....+.++.+|+.++++..
T Consensus 245 i~v~~s~l~sk~vGesek~ir~lF~~Ar~-----~aP~IIfiDEiDai~~~R~~~~~~~~-~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 245 LRIVGSELIQKYLGDGPRLCRQIFKVAGE-----NAPSIVFIDEIDAIGTKRYDSNSGGE-REIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp EEEESGGGCCSSSSHHHHHHHHHHHHHHH-----TCSEEEEEEEESSSSCCCSCSSCSSC-CHHHHHHHHHHHHHHHCCC
T ss_pred EEEEHHHhhhccCchHHHHHHHHHHHHHh-----cCCcEEEEehhhhhcccCCCCCCCcc-HHHHHHHHHHHHHhhCcCC
Confidence 99999999999999999999999999987 48999999999999988855433322 3456788999999999988
Q ss_pred CCCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCc
Q 012655 312 SPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (459)
Q Consensus 312 ~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 389 (459)
..+++||+|||.++.||+|+++ |||..++++.|+.++|.+||+.++++.. ...+
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~---------l~~d--------------- 374 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN---------LSED--------------- 374 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC---------BCSC---------------
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC---------CCCc---------------
Confidence 8999999999999999999995 9999999999999999999998887531 0000
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHhhcC
Q 012655 390 PDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKERSEL 457 (459)
Q Consensus 390 ~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~~~~ 457 (459)
..+..+|+.|+||||+||+.+|..| .|...+...++.+||..|+.+.......+.
T Consensus 375 -------------vdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 375 -------------VNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEEN 431 (437)
T ss_dssp -------------CCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHCCCS
T ss_pred -------------CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCChhh
Confidence 0267899999999999999999998 666778889999999999998877655443
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-37 Score=315.55 Aligned_cols=241 Identities=22% Similarity=0.318 Sum_probs=206.9
Q ss_pred ccchhhhhhhhhhhHHHHHHHHHHHH----HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCc
Q 012655 153 EFDGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (459)
Q Consensus 153 ~~~~~~~~li~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (459)
.+...|+++.|.+++|+.|.+.+..+ ..|...|+.+ ++++|||||||||||++|+++|++++.+|
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~-----prGvLLyGPPGTGKTllAkAiA~e~~~~f------ 243 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA-----PKGALMYGPPGTGKTLLARACAAQTNATF------ 243 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC-----CCEEEEESCTTSSHHHHHHHHHHHHTCEE------
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCeeEEECcCCCCHHHHHHHHHHHhCCCE------
Confidence 44456999999999999999887654 4677788876 89999999999999999999999998777
Q ss_pred ceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh
Q 012655 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (459)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~ 308 (459)
+.++++++.++|+|++.+.++.+|..++.. +|+||||||+|.++.+|.....++. ....+.++.||+.|++
T Consensus 244 ---~~v~~s~l~~~~vGese~~ir~lF~~A~~~-----aP~IifiDEiDal~~~R~~~~~~~~-~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 244 ---LKLAAPQLVQMYIGEGAKLVRDAFALAKEK-----APTIIFIDELDAIGTKRFDSEKSGD-REVQRTMLELLNQLDG 314 (434)
T ss_dssp ---EEEEGGGGCSSCSSHHHHHHHHHHHHHHHH-----CSEEEEEECTHHHHCCCSSGGGGTT-HHHHHHHHHHHHHHTT
T ss_pred ---EEEehhhhhhcccchHHHHHHHHHHHHHhc-----CCeEEeecchhhhhhccCCCCCCCc-hHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999874 8999999999999988855433322 2345678899999999
Q ss_pred hcCCCCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhc
Q 012655 309 LKSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (459)
Q Consensus 309 l~~~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 386 (459)
+....+++||+|||.++.||+|+++ |||..++++.|+.++|.+||+.+++++.. ..+
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~---------~~d------------ 373 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT---------DDD------------ 373 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB---------CSC------------
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC---------CCc------------
Confidence 9888899999999999999999985 99999999999999999999998887411 000
Q ss_pred CCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 387 LSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 387 ~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
..+..+|+.|+||||+||+.+|..| .|...+...++.+||.+|+.+..
T Consensus 374 ----------------vdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 374 ----------------INWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp ----------------CCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCS
T ss_pred ----------------CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 0267899999999999999999988 66667888999999999997643
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=310.39 Aligned_cols=241 Identities=24% Similarity=0.334 Sum_probs=206.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH----HHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceE
Q 012655 156 GMWESLIYESGLKQRLLHYAAS----ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~----~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (459)
-.|+++.|.+++|+.|.+.+.. +..|...|+.+ +++||||||||||||++|+++|++++.+|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~p-----prGILLyGPPGTGKTlLAkAiA~e~~~~f--------- 271 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDP-----PKGILLYGPPGTGKTLCARAVANRTDATF--------- 271 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-----CSEEEECSCTTSSHHHHHHHHHHHHTCEE---------
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCC-----CCceEeeCCCCCcHHHHHHHHHhccCCCe---------
Confidence 4599999999999999988665 44677788876 89999999999999999999999998777
Q ss_pred EEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
+.+++.++.++|+|++.+.++.+|..++. .+|+||||||+|.++..|....++ ......+.++.+|..|++...
T Consensus 272 i~vs~s~L~sk~vGesek~ir~lF~~Ar~-----~aP~IIfiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 272 IRVIGSELVQKYVGEGARMVRELFEMART-----KKACIIFFDEIDAVGGARFDDGAG-GDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp EEEEGGGGCCCSSSHHHHHHHHHHHHHHH-----TCSEEEEEECCTTTSBCCSSSSCG-GGGHHHHHHHHHHHHHHSSCC
T ss_pred EEEEhHHhhcccCCHHHHHHHHHHHHHHh-----cCCceEeecccccccccccCcCCC-ccHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999987 489999999999999877543221 123446788899999999888
Q ss_pred CCCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCc
Q 012655 312 SPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (459)
Q Consensus 312 ~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 389 (459)
..+++||+|||+++.||+|+++ |||+.++++.|+.++|.+||+.+++.+.. ..+
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l---------~~d--------------- 401 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV---------ERG--------------- 401 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB---------CSS---------------
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC---------CCC---------------
Confidence 8999999999999999999996 99999999999999999999988776310 000
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHH
Q 012655 390 PDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKE 453 (459)
Q Consensus 390 ~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~ 453 (459)
..+..||+.|+||||+||+.+|..| .|...+...++.+||..|+.+.+...
T Consensus 402 -------------vdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~ 454 (467)
T 4b4t_H 402 -------------IRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGY 454 (467)
T ss_dssp -------------CCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCc
Confidence 0267899999999999999999988 66677888999999999998876543
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-36 Score=305.37 Aligned_cols=239 Identities=28% Similarity=0.346 Sum_probs=206.3
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHH----HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcce
Q 012655 155 DGMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (459)
+-.|+++.|.+++|+.|.+.+..++ .|...|+.+ ++++|||||||||||++|+++|++++.+|
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~-----prGiLL~GPPGtGKT~lakAiA~~~~~~~-------- 234 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDP-----PRGVLLYGPPGTGKTMLVKAVANSTKAAF-------- 234 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-----CCEEEEESCTTTTHHHHHHHHHHHHTCEE--------
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CceEEEECCCCCCHHHHHHHHHHHhCCCe--------
Confidence 3469999999999999998877644 677778776 89999999999999999999999998777
Q ss_pred EEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc
Q 012655 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (459)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~ 310 (459)
+.+++.++.++|+|++.+.++.+|..++. .+|+|+||||+|.++..|.....++ .....++++.||+.|+++.
T Consensus 235 -~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~-----~aP~IifiDEiD~i~~~R~~~~~~~-~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 235 -IRVNGSEFVHKYLGEGPRMVRDVFRLARE-----NAPSIIFIDEVDSIATKRFDAQTGS-DREVQRILIELLTQMDGFD 307 (428)
T ss_dssp -EEEEGGGTCCSSCSHHHHHHHHHHHHHHH-----TCSEEEEEECTHHHHCSCSSSCSCC-CCHHHHHHHHHHHHHHHSC
T ss_pred -EEEecchhhccccchhHHHHHHHHHHHHH-----cCCCeeechhhhhhhccccCCCCCC-ChHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999987 4899999999999999885543332 2455789999999999998
Q ss_pred CCCCEEEEEecCCCCcccHHHhc--cCCeEEEeC-CCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcC
Q 012655 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVG-PPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (459)
Q Consensus 311 ~~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~-~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 387 (459)
...+++||+|||.++.+|+|+++ |||..|++| +|+.++|.+||+.++++.. ...
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~---------l~~-------------- 364 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS---------LAP-------------- 364 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC---------BCT--------------
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC---------CCc--------------
Confidence 88999999999999999999995 999999996 8999999999999887641 000
Q ss_pred CchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 388 SNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 388 ~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
+ ..+..+|+.|+||||+||+.+|..| .|...+...++.+||.+|+...+
T Consensus 365 ---~-----------~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 365 ---E-----------ADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp ---T-----------CCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHS
T ss_pred ---c-----------cCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhh
Confidence 0 0267899999999999999999988 66677888999999999997654
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=310.79 Aligned_cols=240 Identities=24% Similarity=0.376 Sum_probs=206.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH----HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceE
Q 012655 156 GMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (459)
-.|+++.|.+++|+.|.+.+..++ .|...|+.| ++++|||||||||||++|+++|++++.+|
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~-----prGvLL~GPPGtGKTllAkAiA~e~~~~~--------- 243 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKP-----PKGVLLYGPPGTGKTLLAKAVAATIGANF--------- 243 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-----CCEEEEESCTTSSHHHHHHHHHHHHTCEE---------
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCeEEEECCCCCcHHHHHHHHHHHhCCCE---------
Confidence 359999999999999998887654 677778876 89999999999999999999999998777
Q ss_pred EEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
+.++++++.++|.+++.+.++.+|..++. ..|+||||||+|.++.+|...-.. ......++++.||+.|+++..
T Consensus 244 ~~v~~s~l~sk~~Gese~~ir~~F~~A~~-----~~P~IifiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 244 IFSPASGIVDKYIGESARIIREMFAYAKE-----HEPCIIFMDEVDAIGGRRFSEGTS-ADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp EEEEGGGTCCSSSSHHHHHHHHHHHHHHH-----SCSEEEEEECCCSSSCCCSSSCCS-STTHHHHHHHHHHHHHHSSSC
T ss_pred EEEehhhhccccchHHHHHHHHHHHHHHh-----cCCceeeeecccccccccccCCCC-cchHHHHHHHHHHHHhhcccC
Confidence 89999999999999999999999999987 589999999999999887542221 123446788999999999988
Q ss_pred CCCEEEEEecCCCCcccHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCc
Q 012655 312 SPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (459)
Q Consensus 312 ~~~viIi~Ttn~~~~ld~al~--~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 389 (459)
..+++||+|||.++.||+|++ +|||..++++.|+.++|.+||+.++++... ..+
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~---------~~d--------------- 373 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK---------TGE--------------- 373 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB---------CSC---------------
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC---------Ccc---------------
Confidence 889999999999999999998 469999999999999999999998876411 000
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHH
Q 012655 390 PDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARK 452 (459)
Q Consensus 390 ~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~ 452 (459)
..+..+|+.|+||||+||+.+|..| .|...+...++.+||..|+.+....
T Consensus 374 -------------~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 374 -------------FDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp -------------CCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred -------------cCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 0267899999999999999999988 6667788899999999999877553
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.8e-37 Score=338.01 Aligned_cols=333 Identities=24% Similarity=0.340 Sum_probs=208.3
Q ss_pred cccCCcceeeEEEEecCCCccchHHHHHHHHHHHHhcCCccCCCCCCCCCCCchhhhccceEEEeeCCCCcccccccccc
Q 012655 36 LLAEDKFLVSVEVCLKLSSTARIDDVRLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRICVSDTDEWVKNHDILLFW 115 (459)
Q Consensus 36 ~~~~~~~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (459)
++|+||+..+|||.+|+ ...|.++++.+++++- +..+.+...++..+..+..+|....+.++...++.
T Consensus 357 LrR~GRFd~~I~i~~Pd-~~~R~~IL~~~l~~~~-----------~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~ 424 (806)
T 3cf2_A 357 LRRFGRFDREVDIGIPD-ATGRLEILQIHTKNMK-----------LADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424 (806)
T ss_dssp TTSTTSSCEEEECCCCC-HHHHHHHHHHTCSSSE-----------ECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCcccceEEecCCCC-HHHHHHHHHHHhcCCC-----------CCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999996 8899998876654321 11223334455544444444333222222111111
Q ss_pred c---------------------ccceeEEEecCCCCCCccccCCCCcccccccc--cCccccchhhhhhhhhhhHHHHHH
Q 012655 116 Q---------------------VKPVVQVFQLSEEGPCEELSGDGQLSSFNEWI--LPAKEFDGMWESLIYESGLKQRLL 172 (459)
Q Consensus 116 ~---------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--lP~~~~~~~~~~li~~~~~k~~L~ 172 (459)
+ +...++...+... ..+..++.. .|.. .|+++.|.+++|+.|.
T Consensus 425 r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~----------~ps~~r~~~~~~p~v----~w~diggl~~~k~~l~ 490 (806)
T 3cf2_A 425 KKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS----------NPSALRETVVEVPQV----TWEDIGGLEDVKRELQ 490 (806)
T ss_dssp HHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSS----------SCCCCCCCCCBCCCC----CSTTCCSCHHHHHHHT
T ss_pred hccccccccccccchhhhccceeeHHHHHHHHHhC----------CCcccccccccCCCC----CHHHhCCHHHHHHHHH
Confidence 1 0111111111211 122222221 3443 5999999999999999
Q ss_pred HHHHHHHH----HHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhh
Q 012655 173 HYAASALM----FAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESG 248 (459)
Q Consensus 173 ~~~~~~~~----~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~ 248 (459)
+.+..+.. |.+.|..+ ++++|||||||||||++|+++|++++.+| +.+++.+++++|+++++
T Consensus 491 e~v~~p~~~p~~f~~~g~~~-----~~gvLl~GPPGtGKT~lAkaiA~e~~~~f---------~~v~~~~l~s~~vGese 556 (806)
T 3cf2_A 491 ELVQYPVEHPDKFLKFGMTP-----SKGVLFYGPPGCGKTLLAKAIANECQANF---------ISIKGPELLTMWFGESE 556 (806)
T ss_dssp TTTTTTTTCSGGGSSSCCCC-----CSCCEEESSTTSSHHHHHHHHHHTTTCEE---------EECCHHHHHTTTCSSCH
T ss_pred HHHHhhhhCHHHHHhcCCCC-----CceEEEecCCCCCchHHHHHHHHHhCCce---------EEeccchhhccccchHH
Confidence 98876553 44455554 78999999999999999999999998776 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCccc
Q 012655 249 KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAID 328 (459)
Q Consensus 249 ~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld 328 (459)
+.++.+|..++. ..|+||||||+|+++..|..... .+.....+++++||++|+++....+++||+|||+++.||
T Consensus 557 ~~vr~lF~~Ar~-----~~P~IifiDEiDsl~~~R~~~~~-~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD 630 (806)
T 3cf2_A 557 ANVREIFDKARQ-----AAPCVLFFDELDSIAKARGGNIG-DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp HHHHHHHHHHHT-----TCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSC
T ss_pred HHHHHHHHHHHH-----cCCceeechhhhHHhhccCCCCC-CCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCC
Confidence 999999999987 48999999999999988754221 122345689999999999998888999999999999999
Q ss_pred HHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHH
Q 012655 329 IAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLL 406 (459)
Q Consensus 329 ~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~ 406 (459)
+++++ |||..++++.|+.++|.+||+.++++... .. ...+.
T Consensus 631 ~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~---------~~----------------------------~~dl~ 673 (806)
T 3cf2_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV---------AK----------------------------DVDLE 673 (806)
T ss_dssp HHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-----------CC----------------------------C----
T ss_pred HhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCC---------CC----------------------------CCCHH
Confidence 99996 99999999999999999999887764310 00 01367
Q ss_pred HHHHHccCCChHHHhchHHHH--HHhhc-------------------------CCCCCCHHHHHHHHHHHHH
Q 012655 407 EAAEACEGLSGRSLRKLPFLA--HAALA-------------------------NPNGCDPSKFLLTVIDTAR 451 (459)
Q Consensus 407 ~la~~~~G~Sgr~L~~L~~~a--~a~~~-------------------------~~~~it~~d~~~Al~~~~~ 451 (459)
.||+.|+||||+||..+|..| .|... ....++.+||.+|+.....
T Consensus 674 ~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 745 (806)
T 3cf2_A 674 FLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745 (806)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-----
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCC
Confidence 889999999999999999888 23211 0125888899998876643
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=1.3e-30 Score=284.26 Aligned_cols=233 Identities=29% Similarity=0.388 Sum_probs=194.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHH----HHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 157 MWESLIYESGLKQRLLHYAASALM----FAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~----~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
.|+++.|.++.|+.|.+.+..++. |...|+.| +++||||||||||||+|||++|++++.++ +
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~-----p~GILL~GPPGTGKT~LAraiA~elg~~~---------~ 267 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-----PRGILLYGPPGTGKTLIARAVANETGAFF---------F 267 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCC-----CCEEEEECCTTSCHHHHHHHHHTTTTCEE---------E
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCC-----CCeEEEECCCCCCHHHHHHHHHHHhCCeE---------E
Confidence 499999999999999998877664 44456554 89999999999999999999999998766 9
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++.++.++|.+++.+.++.+|+.++. ..|+||||||+|.++.+|.. +......+++++|++.|+++...
T Consensus 268 ~v~~~~l~sk~~gese~~lr~lF~~A~~-----~~PsIIfIDEiDal~~~r~~----~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 268 LINGPEIMSKLAGESESNLRKAFEEAEK-----NAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp EEEHHHHHSSCTTHHHHHHHHHHHHHTT-----SCSEEEEEESGGGTCCTTTT----CCCTTHHHHHHHHHTHHHHCCGG
T ss_pred EEEhHHhhcccchHHHHHHHHHHHHHHH-----cCCeEEEEehhcccccccCC----CCChHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999876 58999999999999988753 22345578999999999999888
Q ss_pred CCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
++++||++||.++.+|+++++ ||++.++++.|+.++|.+||+.++++... ..
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~---------~~----------------- 392 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL---------AD----------------- 392 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE---------CT-----------------
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC---------Cc-----------------
Confidence 899999999999999999996 99999999999999999999987655310 00
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhc-----------------CCCCCCHHHHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALA-----------------NPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~-----------------~~~~it~~d~~~Al~~~ 449 (459)
+ ..+..+|+.|+||+|+||..|+..| .|... ....++.+||..|+...
T Consensus 393 d-----------vdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~ 459 (806)
T 3cf2_A 393 D-----------VDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp T-----------CCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSS
T ss_pred c-----------cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhC
Confidence 0 1277899999999999999999887 22211 12346778888887543
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=7.2e-29 Score=246.67 Aligned_cols=215 Identities=28% Similarity=0.409 Sum_probs=178.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHh-cccccCCCCcceEEEEc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKL-SIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l-~~~~~~~~~~~~~i~i~ 235 (459)
.|++++|.+++|+.|.+.+..+..+++.--. ....++++||+||||||||++|+++|+++ +.+ ++.++
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---------~~~i~ 78 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATEANNST---------FFSIS 78 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT--TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCE---------EEEEE
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC--CCCCCceEEEECCCCccHHHHHHHHHHHcCCCc---------EEEEE
Confidence 5999999999999999999887766653110 11236899999999999999999999998 444 48899
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-CCCC
Q 012655 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-SSPN 314 (459)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-~~~~ 314 (459)
+.++.++|.+++.+.++.+|..+.. ..+++|||||+|.+...+.. .+.....++++.++..++++. ...+
T Consensus 79 ~~~l~~~~~g~~~~~~~~lf~~a~~-----~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 79 SSDLVSKWLGESEKLVKNLFQLARE-----NKPSIIFIDEIDSLCGSRSE----NESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp CCSSCCSSCCSCHHHHHHHHHHHHH-----TSSEEEEEETTTGGGCCSSS----CCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHHh-----cCCcEEEeecHHHhcccccc----ccchHHHHHHHHHHHHHhcccccCCC
Confidence 9999999999999999999998876 47899999999999876643 233445788999999999875 3578
Q ss_pred EEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHh
Q 012655 315 VIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQE 394 (459)
Q Consensus 315 viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 394 (459)
++||+|||.++.+|+++++||+..++++.|+.++|.+|++.++.... . . +
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~---~----------~---------------l-- 199 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ---N----------S---------------L-- 199 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC---B----------C---------------C--
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC---C----------C---------------C--
Confidence 99999999999999999999999999999999999999999876520 0 0 0
Q ss_pred hhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 395 ADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 395 ~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
....+..+|+.+.||||++|+.|+..|
T Consensus 200 ------~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 200 ------TEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp ------CHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 012478899999999999999999888
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=5.7e-29 Score=247.37 Aligned_cols=215 Identities=30% Similarity=0.414 Sum_probs=176.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+++|+.|.+.+..+..+++.-.. ....++++||+||||||||++|+++|+.++.++ +.+++
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---------~~v~~ 84 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKG--NRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---------FSVSS 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT--TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---------EEEEH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhc--CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---------EEEch
Confidence 4999999999999999999877766542111 112267899999999999999999999997665 89999
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-CCCCE
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-SSPNV 315 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-~~~~v 315 (459)
.++.++|.++..+.+..+|..+.. ..|++|||||+|.+...+... +.....++++.++..++++. ...++
T Consensus 85 ~~l~~~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 85 SDLVSKWMGESEKLVKQLFAMARE-----NKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HHHHTTTGGGHHHHHHHHHHHHHH-----TSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HHHhhcccchHHHHHHHHHHHHHh-----cCCeEEEechhhhhhccCCCC----cchHHHHHHHHHHHHhccccccCCce
Confidence 999999999999999999998876 478999999999998766432 23455788999999999884 55779
Q ss_pred EEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhh
Q 012655 316 IILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEA 395 (459)
Q Consensus 316 iIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 395 (459)
+||+|||.++.+|+++++||+..++++.|+.++|.+|++.++.... . . +
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~---~----------~---------------~--- 204 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP---C----------V---------------L--- 204 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC---C----------C---------------C---
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC---C----------C---------------C---
Confidence 9999999999999999999999999999999999999999876520 0 0 0
Q ss_pred hhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 396 DRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 396 ~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
....+..+|+.++||||++|+.++..|
T Consensus 205 -----~~~~l~~la~~t~g~sg~di~~l~~~a 231 (322)
T 3eie_A 205 -----TKEDYRTLGAMTEGYSGSDIAVVVKDA 231 (322)
T ss_dssp -----CHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 012477899999999999999999888
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=1.2e-28 Score=242.85 Aligned_cols=236 Identities=28% Similarity=0.426 Sum_probs=189.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH----HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 157 MWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
.|++++|.+++++.|.+.+..+. .|...|+.+ ++++||+||||||||++|+++|+.++.++ +
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~-----~~~vLL~Gp~GtGKT~la~ala~~~~~~~---------i 78 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP-----SKGVLFYGPPGCGKTLLAKAIANECQANF---------I 78 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-----CSEEEEECSSSSSHHHHHHHHHHHTTCEE---------E
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC-----CceEEEECCCCcCHHHHHHHHHHHhCCCE---------E
Confidence 59999999999999999887654 455556665 78999999999999999999999987554 8
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++.++.+.|++++.+.+..+|+.+.. ..|+++||||+|.+...+....... .....++++.++..++++...
T Consensus 79 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 79 SIKGPELLTMWFGESEANVREIFDKARQ-----AAPCVLFFDELDSIAKARGGNIGDG-GGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp EECHHHHHHHHHTTCTTHHHHHHHHHHH-----TCSEEEEECSTTHHHHHHTTTTCCS-SCSCCHHHHHHHHHHHSSCTT
T ss_pred EEEhHHHHhhhcCchHHHHHHHHHHHHh-----cCCeEEEEEChHHHhhccCCCcCCc-chHHHHHHHHHHHHhhcccCC
Confidence 9999999999999988889999998876 3789999999999998775432111 123457889999999988777
Q ss_pred CCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
.+++||+|||.++.+|+++++ ||+..++++.|+.++|.+|++.++++.. . ....
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~---~------~~~~--------------- 208 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---V------AKDV--------------- 208 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---B------CSSC---------------
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC---C------Cccc---------------
Confidence 889999999999999999987 9999999999999999999988876531 0 0000
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHH--Hhhc-------------------------CCCCCCHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAH--AALA-------------------------NPNGCDPSKFL 443 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~--a~~~-------------------------~~~~it~~d~~ 443 (459)
.+..+|..+.||||++|+.++..|. |... ....++.+||.
T Consensus 209 -------------~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 275 (301)
T 3cf0_A 209 -------------DLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFE 275 (301)
T ss_dssp -------------CHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHH
T ss_pred -------------hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHH
Confidence 1557788899999999999988772 2110 01368899999
Q ss_pred HHHHHH
Q 012655 444 LTVIDT 449 (459)
Q Consensus 444 ~Al~~~ 449 (459)
.|++..
T Consensus 276 ~al~~~ 281 (301)
T 3cf0_A 276 EAMRFA 281 (301)
T ss_dssp HHHTTC
T ss_pred HHHHHc
Confidence 998654
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.4e-27 Score=232.43 Aligned_cols=241 Identities=28% Similarity=0.404 Sum_probs=194.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH----HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 157 MWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
.|++++|.+.+++.+.+++..+. .+...|..+ ++++||+||||||||++|+++|+.++.++ +
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~ll~G~~GtGKT~la~~la~~~~~~~---------~ 80 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEP-----PKGILLYGPPGTGKTLLAKAVATETNATF---------I 80 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCC-----CSEEEEESSSSSSHHHHHHHHHHHTTCEE---------E
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCC-----CCeEEEECCCCCcHHHHHHHHHHHhCCCE---------E
Confidence 59999999999999998876543 455556554 78899999999999999999999997665 8
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++..+...+.+.....+..+|..+.. ..|++|+|||+|.+..++.....++. ......+..++..++.+...
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 81 RVVGSELVKKFIGEGASLVKDIFKLAKE-----KAPSIIFIDEIDAIAAKRTDALTGGD-REVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp EEEGGGGCCCSTTHHHHHHHHHHHHHHH-----TCSEEEEEETTHHHHBCCSSSCCGGG-GHHHHHHHHHHHHHHTTCSS
T ss_pred EEehHHHHHhccchHHHHHHHHHHHHHH-----cCCeEEEEECHHHhcccCccccCCcc-HHHHHHHHHHHHHhhCCCCC
Confidence 8999999998988888888888888776 47789999999999876654332221 23345666677777776777
Q ss_pred CCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
.+++||+|||.++.+++++++ ||+..+.+++|+.++|.+|++.++.... . ..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~---~------~~----------------- 208 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN---L------AE----------------- 208 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC---B------CT-----------------
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC---C------CC-----------------
Confidence 889999999999999999997 9999999999999999999988765421 0 00
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHh
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKER 454 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~ 454 (459)
...+..+++.+.|+++++++.++..| .|...+...++.+||.+|+.+......
T Consensus 209 -----------~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~~ 263 (285)
T 3h4m_A 209 -----------DVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKK 263 (285)
T ss_dssp -----------TCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHC
T ss_pred -----------cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhccc
Confidence 00266889999999999999999998 555567788999999999999876543
No 13
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=4.4e-28 Score=244.18 Aligned_cols=217 Identities=29% Similarity=0.408 Sum_probs=171.0
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEE
Q 012655 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (459)
...|++++|.+++++.|.+.+..+..+++.--. ....++++||+||||||||++|+++|+.++.++ +.+
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---------~~v 115 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG--NRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---------FSV 115 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS--SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---------EEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc--CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---------EEe
Confidence 345999999999999999998776655542100 112257899999999999999999999997665 889
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC-CC
Q 012655 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS-SP 313 (459)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~-~~ 313 (459)
++.++.+.|.++..+.+..+|..+.. ..+++|||||+|.+...+.. ++.....++++.++..|+.+.. ..
T Consensus 116 ~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~r~~----~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 116 SSSDLVSKWMGESEKLVKQLFAMARE-----NKPSIIFIDQVDALTGTRGE----GESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp EHHHHHSCC---CHHHHHHHHHHHHH-----TSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---C
T ss_pred eHHHHhhhhcchHHHHHHHHHHHHHH-----cCCeEEEEechHhhcccCCC----CcchHHHHHHHHHHHHhhcccccCC
Confidence 99999999999998999999988765 47899999999999876532 2334557888999999998753 56
Q ss_pred CEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHH
Q 012655 314 NVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQ 393 (459)
Q Consensus 314 ~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 393 (459)
+++||+|||.++.+|+++++||+..++++.|+.++|.+|++.++.... . . +
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~---~----------~---------------~- 237 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP---S----------V---------------L- 237 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSC---B----------C---------------C-
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCC---C----------C---------------C-
Confidence 799999999999999999999999999999999999999998876520 0 0 0
Q ss_pred hhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 394 EADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 394 ~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
....+..||+.++||+|++|+.++..|
T Consensus 238 -------~~~~l~~la~~t~G~sg~dl~~l~~~A 264 (355)
T 2qp9_X 238 -------TKEDYRTLGAMTEGYSGSDIAVVVKDA 264 (355)
T ss_dssp -------CHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 012477899999999999999999888
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=1.7e-27 Score=228.76 Aligned_cols=239 Identities=23% Similarity=0.372 Sum_probs=187.8
Q ss_pred chhhhhhhhhhhHHHHHHHHHHH---HHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceE
Q 012655 155 DGMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (459)
...|++++|.+.+++.+.+.+.. +..+...|.. .+++++|+||||||||++|+++++.++.++
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~vll~G~~GtGKT~la~~la~~~~~~~--------- 73 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGK-----IPKGVLMVGPPGTGKTLLAKAIAGEAKVPF--------- 73 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----C-----CCCEEEEECCTTSCHHHHHHHHHHHHTCCE---------
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCC-----CCCeEEEECcCCCCHHHHHHHHHHHcCCCE---------
Confidence 34699999999999998876653 1122223333 367899999999999999999999987655
Q ss_pred EEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC
Q 012655 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (459)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~ 311 (459)
+.+++.++...+.+...+.+..+|+.+.. ..+++++|||+|.+...+...+.++. ....+.++.++..++.+..
T Consensus 74 ~~i~~~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~il~iDeid~l~~~~~~~~~~~~-~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 74 FTISGSDFVEMFVGVGASRVRDMFEQAKK-----AAPCIIFIDEIDAVGRQRGAGLGGGH-DEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp EEECSCSSTTSCCCCCHHHHHHHHHHHHT-----TCSEEEEETTHHHHTCCCSTTSCCTT-CHHHHHHHHHHHHHHTCCS
T ss_pred EEEeHHHHHHHhhhhhHHHHHHHHHHHHH-----cCCeeehhhhhhhhccCCCCCcCCCc-hHHHHHHHHHHHHhhCccc
Confidence 88999998888888888888888888764 36789999999999887665443322 3345788899999998877
Q ss_pred CCCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCc
Q 012655 312 SPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (459)
Q Consensus 312 ~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 389 (459)
..+++||+|||.++.+|+++++ ||+..++++.|+.++|.+|++.+++.. . + ..
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~---~-l-----~~---------------- 202 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---P-L-----AP---------------- 202 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---C-B-----CT----------------
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC---C-C-----Cc----------------
Confidence 7889999999999999999986 999999999999999999998876542 0 0 00
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 390 PDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 390 ~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
+. .+..+|..+.||++|+|+.++..| .|...+...++.+||..|+.+..
T Consensus 203 -~~-----------~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 203 -DI-----------DAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp -TC-----------CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred -cc-----------cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 00 144678899999999999999988 45556678999999999998753
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=228.89 Aligned_cols=243 Identities=25% Similarity=0.328 Sum_probs=174.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHH---HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEE
Q 012655 157 MWESLIYESGLKQRLLHYAASA---LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~---~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (459)
.|++++|.+++|+.+.+.+... ..|...|.. .++++||+||||||||++|+++|+.++.++ +.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~-----~~~~vll~G~~GtGKT~la~~la~~~~~~~---------~~ 69 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVATEAQVPF---------LA 69 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CC-----CCCEEEEESCTTSSHHHHHHHHHHHHTCCE---------EE
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCC-----CCceEEEECCCCCCHHHHHHHHHHHhCCCE---------EE
Confidence 4899999999999998876541 123333443 368899999999999999999999997665 88
Q ss_pred EccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCC
Q 012655 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (459)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~ 313 (459)
+++.++...+.+.....+..+|..+.. ..+++|+|||+|.+...+.....+.........++.++..++......
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 70 MAGAEFVEVIGGLGAARVRSLFKEARA-----RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp EETTTTSSSSTTHHHHHHHHHHHHHHH-----TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred echHHHHhhccChhHHHHHHHHHHHHh-----cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 999998888877777778888887765 368999999999998776544333333344567788888888877777
Q ss_pred CEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchh
Q 012655 314 NVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPD 391 (459)
Q Consensus 314 ~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 391 (459)
++++|+|+|.++.+|+++++ ||+..+++++|+.++|.+|++.++..... ..
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-------------~~-------------- 197 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-------------TQ-------------- 197 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-------------CB--------------
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-------------Cc--------------
Confidence 89999999999999999997 99999999999999999999999886410 00
Q ss_pred HHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHH
Q 012655 392 IQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKE 453 (459)
Q Consensus 392 i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~ 453 (459)
.....+..+++.+.|++|++|+.++..| .|...+...++.+||..|+.+.....
T Consensus 198 --------~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 198 --------SSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGT 253 (262)
T ss_dssp --------THHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHHH
T ss_pred --------chhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccCh
Confidence 0011256889999999999999999988 33344567899999999998876554
No 16
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=9.5e-28 Score=233.18 Aligned_cols=236 Identities=28% Similarity=0.403 Sum_probs=178.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH----HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 157 MWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
.|+++.|.+++|+.|.+++..+. .+...++.+ +++++|+||||||||||++++|+.++.. ++
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~-----~~GvlL~Gp~GtGKTtLakala~~~~~~---------~i 73 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVT-----PAGVLLAGPPGCGKTLLAKAVANESGLN---------FI 73 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCC-----CSEEEEESSTTSCHHHHHHHHHHHTTCE---------EE
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC-----CCeEEEECCCCCcHHHHHHHHHHHcCCC---------EE
Confidence 59999999999999988765444 455556554 6779999999999999999999998654 48
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++.++.+.+.++..+.++.+|+.+.. ..|+++++||++.+...+... ......+.++.++..|++....
T Consensus 74 ~i~g~~l~~~~~~~~~~~i~~vf~~a~~-----~~p~i~~~Deid~~~~~r~~~----~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 74 SVKGPELLNMYVGESERAVRQVFQRAKN-----SAPCVIFFDEVDALCPRRSDR----ETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp EEETTTTCSSTTHHHHHHHHHHHHHHHH-----TCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCST
T ss_pred EEEcHHHHhhhhhHHHHHHHHHHHHHHh-----cCCCeEeeehhhhhhcccCCC----cchHHHHHHHHHHHhhhccccc
Confidence 9999999888888888899999998765 378999999999876544221 1112346788999999998888
Q ss_pred CCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
..+++++++|.++.+|+++++ |||..++++.|+.++|.+||+.+++.... . ....
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~---~---~~~~----------------- 201 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTK---P---PLDA----------------- 201 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBT---T---BBCT-----------------
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccC---C---CCcc-----------------
Confidence 889999999999999999996 99999999999999999999987654100 0 0000
Q ss_pred hHHhhhhhhHHHHHHHHHHHH--ccCCChHHHhchHHHH--HHhhc-----------CCCCCCHHHHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEA--CEGLSGRSLRKLPFLA--HAALA-----------NPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~--~~G~Sgr~L~~L~~~a--~a~~~-----------~~~~it~~d~~~Al~~~ 449 (459)
+ ..+..+|.. |+||||.||..|+..| .|... +...++.+||..|+...
T Consensus 202 ~-----------~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 202 D-----------VNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp T-----------CCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTC
T ss_pred c-----------cCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 0 126677875 5699999999999988 23211 23468999999998754
No 17
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=2.7e-27 Score=245.56 Aligned_cols=238 Identities=24% Similarity=0.347 Sum_probs=189.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH---HHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 156 GMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
..|++++|.++.|+.+.+.+.. +..|...|... +++++|+||||||||++++++|++++.+| +
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~-----p~gvLL~GppGtGKT~Laraia~~~~~~f---------~ 78 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARM-----PKGILLVGPPGTGKTLLARAVAGEANVPF---------F 78 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCC-----CSEEEEECCTTSSHHHHHHHHHHHHTCCE---------E
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCC-----CCeEEEECCCCCCHHHHHHHHHHHcCCCe---------e
Confidence 4589999999999988877653 33455555543 67899999999999999999999998766 8
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++.++...+.+.....++.+|..+.. ..|++|||||+|.+...++..+.++. ....+.++.++..|+++...
T Consensus 79 ~is~~~~~~~~~g~~~~~~r~lf~~A~~-----~~p~ILfIDEid~l~~~r~~~~~g~~-~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 79 HISGSDFVELFVGVGAARVRDLFAQAKA-----HAPCIVFIDEIDAVGRHRGAGLGGGH-DEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp EEEGGGTTTCCTTHHHHHHHHHHHHHHH-----TCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGG
T ss_pred eCCHHHHHHHHhcccHHHHHHHHHHHHh-----cCCCEEEEechhhhhhhcccccCcCc-HHHHHHHHHHHHHHhccCCC
Confidence 8999999888888888888899988876 47899999999999887755443332 34467889999999988777
Q ss_pred CCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
.+++||++||.++.+|+++++ ||+..+.++.|+.++|.+|++.+++... ...
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~---------l~~----------------- 206 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP---------LAE----------------- 206 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCT-----------------
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC---------Ccc-----------------
Confidence 789999999999999999885 9999999999999999999987766420 000
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
++ .+..+|+.+.|++||+|+.++..| .|...+...++.+||..|+.+..
T Consensus 207 ~v-----------~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 207 DV-----------NLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp TC-----------CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred hh-----------hHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHh
Confidence 00 155689999999999999999988 45555677899999999998764
No 18
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.94 E-value=4.7e-27 Score=243.47 Aligned_cols=216 Identities=28% Similarity=0.406 Sum_probs=167.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHh-cccccCCCCcceEEEE
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKL-SIRFSSRYPQCQLVEV 234 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l-~~~~~~~~~~~~~i~i 234 (459)
..|++++|.+.+++.|.+.+..+..++..-- -....++++||+||||||||++|+++|+.+ +.+ ++.+
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~--~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~---------~~~v 199 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNST---------FFSI 199 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS--GGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSE---------EEEE
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh--ccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCC---------EEEE
Confidence 4599999999999999998877665543210 011235889999999999999999999998 444 4899
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-CCC
Q 012655 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-SSP 313 (459)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-~~~ 313 (459)
++.++.+.|.+++...+..+|..+.. ..+++|||||+|.+...+.. .+.....++++.++..++++. ...
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARE-----NKPSIIFIDEIDSLCGSRSE----NESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHH-----SCSEEEEESCTTTTCCCSSC----CCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHH-----cCCeEEEEechHhhccCCCC----ccccHHHHHHHHHHHHHhCcccCCC
Confidence 99999999999888888999988765 47899999999999776532 233445788999999998875 357
Q ss_pred CEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHH
Q 012655 314 NVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQ 393 (459)
Q Consensus 314 ~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 393 (459)
+++||+|||.++.+|+++++||+..++++.|+.++|.+|++.++.... . .+.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~---~-------------------------~l~ 322 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ---N-------------------------SLT 322 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC---E-------------------------ECC
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC---C-------------------------CCC
Confidence 799999999999999999999999999999999999999999876520 0 000
Q ss_pred hhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 394 EADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 394 ~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
...+..||+.++||||++|+.++..|
T Consensus 323 --------~~~l~~la~~t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 323 --------EADFQELGRKTDGYSGADISIIVRDA 348 (444)
T ss_dssp --------HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 12477899999999999999999888
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=5.4e-26 Score=237.47 Aligned_cols=238 Identities=27% Similarity=0.353 Sum_probs=193.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHH----HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 157 MWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
.|++++|.+..++++.+.+..+ ..|...|..+ ++++||+||||||||++|+++++.++.+| +
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~-----~~~vLL~GppGtGKT~lAraia~~~~~~f---------v 267 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-----PRGILLYGPPGTGKTLIARAVANETGAFF---------F 267 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-----CCEEEEECSTTSSHHHHHHHHHHHCSSEE---------E
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCC-----CCcEEEECcCCCCHHHHHHHHHHHhCCCE---------E
Confidence 5899999999999988877654 4566666665 68899999999999999999999987665 9
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++..+.+.++++....+..+|..+.. ..|++|||||+|.+..++.. .......++++.|+..|+.+...
T Consensus 268 ~vn~~~l~~~~~g~~~~~~~~~f~~A~~-----~~p~iLfLDEId~l~~~~~~----~~~~~~~~~~~~LL~~ld~~~~~ 338 (489)
T 3hu3_A 268 LINGPEIMSKLAGESESNLRKAFEEAEK-----NAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQR 338 (489)
T ss_dssp EEEHHHHHTSCTTHHHHHHHHHHHHHHH-----TCSEEEEEESHHHHCBCTTS----CCCHHHHHHHHHHHHHHHHSCTT
T ss_pred EEEchHhhhhhcchhHHHHHHHHHHHHh-----cCCcEEEecchhhhcccccc----ccchHHHHHHHHHHHHhhccccC
Confidence 9999999999999988889999998876 47889999999999876532 12234468899999999998888
Q ss_pred CCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
.+++||+|||.++.+++++++ ||+..++++.|+.++|.+|++.+++... ...
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~---------l~~----------------- 392 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---------LAD----------------- 392 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC---------BCT-----------------
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC---------Ccc-----------------
Confidence 899999999999999999986 9999999999999999999998766431 000
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCC-----------------CCCCHHHHHHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANP-----------------NGCDPSKFLLTVIDTAR 451 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~-----------------~~it~~d~~~Al~~~~~ 451 (459)
...+..+|+.+.||+|++|..|+..| .+..... ..++.+||..|+.....
T Consensus 393 -----------~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~p 461 (489)
T 3hu3_A 393 -----------DVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (489)
T ss_dssp -----------TCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHH
T ss_pred -----------hhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCc
Confidence 01267889999999999999999888 3322221 24789999999987765
Q ss_pred HHh
Q 012655 452 KER 454 (459)
Q Consensus 452 ~~~ 454 (459)
...
T Consensus 462 s~~ 464 (489)
T 3hu3_A 462 SAL 464 (489)
T ss_dssp HHH
T ss_pred hhh
Confidence 443
No 20
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=226.54 Aligned_cols=239 Identities=23% Similarity=0.296 Sum_probs=185.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
..|++++|.+.+++.|.+.+..+...+..- . -....++++||+||||||||++|+++|+.++.++ +.++
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~-~-~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---------~~i~ 149 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIF-T-GLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF---------FSIS 149 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTS-C-GGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE---------EEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhH-h-hccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE---------EEEe
Confidence 359999999999999999988765443310 0 0112367899999999999999999999987655 8999
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--CCC
Q 012655 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--SSP 313 (459)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~--~~~ 313 (459)
+.++...+.++....+..+|..+.. ..+++|||||+|.+...+.. +......++++.++..+++.. ...
T Consensus 150 ~~~l~~~~~g~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 150 ASSLTSKWVGEGEKMVRALFAVARC-----QQPAVIFIDEIDSLLSQRGD----GEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp GGGGCCSSTTHHHHHHHHHHHHHHH-----TCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----CCC
T ss_pred hHHhhccccchHHHHHHHHHHHHHh-----cCCeEEEEeCchhhhccCCC----CcchHHHHHHHHHHHHHhcccccCCC
Confidence 9999999999888888888887765 47899999999999776532 223345678889999998764 346
Q ss_pred CEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHH
Q 012655 314 NVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQ 393 (459)
Q Consensus 314 ~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 393 (459)
+++||+|||.++.+++++++||+..++++.|+.++|.++++.++... +. . +.
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~---~~----------~---------------l~ 272 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKE---QC----------C---------------LS 272 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTS---CB----------C---------------CC
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhc---CC----------C---------------cc
Confidence 79999999999999999999999999999999999999999887752 00 0 00
Q ss_pred hhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhh------------cCCCCCCHHHHHHHHHHHH
Q 012655 394 EADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAAL------------ANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 394 ~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~------------~~~~~it~~d~~~Al~~~~ 450 (459)
...+..+++.+.||+|++|+.|+..| .+.. .....++.+||..|+....
T Consensus 273 --------~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 273 --------EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp --------HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHG
T ss_pred --------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 12477899999999999999999887 2222 2335789999999997764
No 21
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.93 E-value=2.3e-25 Score=218.22 Aligned_cols=237 Identities=27% Similarity=0.358 Sum_probs=183.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
..|++++|.+.+++.+.+.+..+..+++.-.. . ...+++++|+||||||||++|+++|+.++.++ +.++
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~-~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---------~~i~ 86 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTG-L-RAPAKGLLLFGPPGNGKTLLARAVATECSATF---------LNIS 86 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCG-G-GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---------EEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhc-C-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---------EEee
Confidence 35999999999999999998776654432100 0 11257899999999999999999999987655 8899
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC---
Q 012655 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS--- 312 (459)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~--- 312 (459)
+..+...+.++....+..+|..+.. ..+++|||||+|.+...+... ......+..+.++..++.....
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 87 AASLTSKYVGDGEKLVRALFAVARH-----MQPSIIFIDEVDSLLSERSSS----EHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp STTTSSSSCSCHHHHHHHHHHHHHH-----TCSEEEEEETGGGTSBCC---------CCSHHHHHHHHHHHHHCC-----
T ss_pred HHHHhhcccchHHHHHHHHHHHHHH-----cCCcEEEeccHHHhccccccC----cchHHHHHHHHHHHHHhcccccCCC
Confidence 9999988888888888888887765 478999999999998765432 1233467788899999887543
Q ss_pred CCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhH
Q 012655 313 PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDI 392 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 392 (459)
.+++||++||.++.+++++++||+..++++.|+.++|..|++.++... +. . +
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~---~~----------~---------------~ 209 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQ---GS----------P---------------L 209 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGG---SC----------C---------------S
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhc---CC----------C---------------C
Confidence 569999999999999999999999999999999999999999887653 00 0 0
Q ss_pred HhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhc------------CCCCCCHHHHHHHHHH
Q 012655 393 QEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALA------------NPNGCDPSKFLLTVID 448 (459)
Q Consensus 393 ~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~------------~~~~it~~d~~~Al~~ 448 (459)
. ...+..+++.+.|++|++|+.|+..| .+... ....++.+||..|+..
T Consensus 210 ~--------~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 210 D--------TEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp C--------HHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTS
T ss_pred C--------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHH
Confidence 0 12377889999999999999999887 33322 1357999999998754
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=3.1e-25 Score=212.66 Aligned_cols=234 Identities=22% Similarity=0.325 Sum_probs=175.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH---HHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 156 GMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
..|++++|.++++..+.+.... +..+...++.. +++++|+||||||||||++++++.++.+ ++
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~-----~~g~ll~G~~G~GKTtl~~~i~~~~~~~---------~i 78 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARVP---------FI 78 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCC-----CSEEEEECCTTSSHHHHHHHHHHHTTCC---------EE
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCC-----CCeEEEECCCCCCHHHHHHHHHHHhCCC---------EE
Confidence 3589999999998888776543 23344444443 5679999999999999999999998643 48
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++.++...+.+...+.+..+|+.+.. ..++++++||+|.+...+..... .......+.++.++..+++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~~Deid~l~~~~~~~~~-~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 79 TASGSDFVEMFVGVGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp EEEHHHHHHSCTTHHHHHHHHHHHHHTT-----SSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTT
T ss_pred EeeHHHHHHHHhhHHHHHHHHHHHHHHh-----cCCeEEEehhhhhhhcccCcccc-ccchHHHHHHHHHHHHHhCCCCC
Confidence 8888887776667666778888887653 35789999999999766532111 11123356778888998887777
Q ss_pred CCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
..+++++++|.++.+|+++++ ||+..++++.|+.++|.+|++.+.+.. ....
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~----------------- 206 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAE----------------- 206 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS---------CBCT-----------------
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC---------CCCc-----------------
Confidence 779999999999999999996 899999999999999999998765431 0000
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTV 446 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al 446 (459)
+ ..+..+|+.+.|++||+|+.++..| .|...+...++.+||.+|+
T Consensus 207 ~-----------~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 207 D-----------VDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp T-----------CCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred c-----------cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 0 0155789999999999999999988 4444566789999998875
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=5.7e-25 Score=224.10 Aligned_cols=236 Identities=28% Similarity=0.361 Sum_probs=176.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+.+++.+.+++..+......... ....++++||+||||||||++|+++|..++.++ +.+++
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---------~~v~~ 181 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTG--LRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---------FNISA 181 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCG--GGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---------EEECS
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcc--cCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---------EEeeH
Confidence 4999999999999999998776554331110 012257899999999999999999999987665 99999
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC--CCC
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS--SPN 314 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~--~~~ 314 (459)
..+.+.+.++....+..+|..+.. ..+++|||||+|.+...+.. +......++++.++..++++.. ..+
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~-----~~~~il~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARE-----LQPSIIFIDQVDSLLCERRE----GEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHH-----SSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC-----C
T ss_pred HHhhccccchHHHHHHHHHHHHHh-----cCCeEEEEECchhhcccCCC----ccchHHHHHHHHHHHHhhcccccCCCC
Confidence 999999998888888899988876 47789999999999776532 2234557888999999998764 467
Q ss_pred EEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHh
Q 012655 315 VIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQE 394 (459)
Q Consensus 315 viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 394 (459)
++||+|||.++.+++++++||+..++++.|+.++|.+|++.++... +. . +.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~---~~----------~---------------l~- 303 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQ---GS----------P---------------LT- 303 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTS---CC----------C---------------SC-
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhc---CC----------C---------------CC-
Confidence 9999999999999999999999999999999999999998877652 00 0 00
Q ss_pred hhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhc------------CCCCCCHHHHHHHHHH
Q 012655 395 ADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALA------------NPNGCDPSKFLLTVID 448 (459)
Q Consensus 395 ~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~------------~~~~it~~d~~~Al~~ 448 (459)
...+..+++.+.|+++++|..|+..| .+... ....++.+||..|+..
T Consensus 304 -------~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 304 -------QKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp -------HHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred -------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 12377899999999999999999887 33222 3457899999998864
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=1.7e-25 Score=233.46 Aligned_cols=238 Identities=22% Similarity=0.321 Sum_probs=183.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHH---HHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 156 GMWESLIYESGLKQRLLHYAASA---LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~---~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
..|++++|.+++|+.+.+.+... ..|...| ...+++++|+||||||||+|++++|+.++.++ +
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg-----~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~---------i 93 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG-----ARIPKGVLLVGPPGVGKTHLARAVAGEARVPF---------I 93 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTS-----CCCCSEEEEECSSSSSHHHHHHHHHHHTTCCE---------E
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhcc-----CCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---------E
Confidence 35899999999999988776531 1222223 33367899999999999999999999986544 8
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++.++...+.+.....++.+|+.+.. ..|+++||||+|.+...+.....+ ......+.++.++..|++....
T Consensus 94 ~i~g~~~~~~~~g~~~~~v~~lfq~a~~-----~~p~il~IDEId~l~~~r~~~~~~-~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 94 TASGSDFVEMFVGVGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRGSGVGG-GNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp EEEGGGGTSSCTTHHHHHHHHHTTTSSS-----SSSCEEEEECGGGTCCCSSSSTTT-SSHHHHHHHHHHHHHGGGCCSS
T ss_pred EEehhHHHHhhhhhHHHHHHHHHHHHHh-----cCCCEEEEehHHHHHHhhccCcCC-CcHHHHHHHHHHHHHhcccccC
Confidence 9999998888887777778888876543 367999999999987665432211 1223357788999999988777
Q ss_pred CCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
..+++++++|.++.+|+++++ ||++.+.++.|+.++|.+|++.+++.. ...++
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~---------~l~~d---------------- 222 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAED---------------- 222 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS---------CCCCS----------------
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC---------CCChH----------------
Confidence 789999999999999999985 899999999999999999997654321 00000
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
..+..+|..+.|++||+|+.++..| .|...+...++.+||.+|+.+..
T Consensus 223 ------------v~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 223 ------------VDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVM 272 (499)
T ss_dssp ------------STTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHT
T ss_pred ------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Confidence 0155789999999999999999988 34444567899999999998764
No 25
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=3.8e-24 Score=208.00 Aligned_cols=234 Identities=22% Similarity=0.322 Sum_probs=174.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH---HHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 156 GMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
..|++++|.+++++.+.+.... +..+...++.. +++++|+||||||||||++++++.++.+ ++
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~-----~~gvll~Gp~GtGKTtl~~~i~~~~~~~---------~i 102 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARVP---------FI 102 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCC-----CCEEEEECCTTSSHHHHHHHHHHHTTCC---------EE
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCC-----CCeEEEECCCcChHHHHHHHHHHHcCCC---------EE
Confidence 4599999999998888776543 22344444432 5669999999999999999999998643 48
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+++.++...+.+...+.+..+|+.+.. ..++++++||++.+...+..... .......+.++.++..+++....
T Consensus 103 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~iDeid~l~~~~~~~~~-~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 103 TASGSDFVEMFVGVGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp EEEHHHHHHSTTTHHHHHHHHHHHHHHT-----SCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTT
T ss_pred EecHHHHHHHHhhHHHHHHHHHHHHHHh-----cCCcEEehhhhHhhhcccccccC-CcchHHHHHHHHHHHHHhCCCCC
Confidence 8888887766666666778888887753 36789999999998765432111 11123356677888888877666
Q ss_pred CCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCch
Q 012655 313 PNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (459)
..+++++++|.++.+|+++++ ||+..++++.|+.++|.+|++.+++.. . ..+
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~----~-----~~~----------------- 230 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK----P-----LAE----------------- 230 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS----C-----BCT-----------------
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC----C-----CCc-----------------
Confidence 779999999999999999985 899999999999999999998765431 0 000
Q ss_pred hHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHH
Q 012655 391 DIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTV 446 (459)
Q Consensus 391 ~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al 446 (459)
+ ..+..+|..+.|++||+|+.++..| .|...+...++.+||.+|+
T Consensus 231 ~-----------~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 231 D-----------VDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp T-----------CCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred c-----------cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 0 0155789999999999999999888 3444566789999998875
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.91 E-value=5.2e-27 Score=226.58 Aligned_cols=238 Identities=25% Similarity=0.350 Sum_probs=172.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH---HHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 156 GMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
..|++++|.+.+++.+.+.+.. +..|...|..+ +++++|+||||||||++|+++|+.++.++ +
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~vll~G~~GtGKT~la~~la~~~~~~~---------~ 73 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEAHVPF---------F 73 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCC-----CSCCCCBCSSCSSHHHHHHHHHHHHTCCC---------C
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCC-----CceEEEECCCCCcHHHHHHHHHHHhCCCE---------E
Confidence 4589999999999988876653 33455555554 57799999999999999999999998766 6
Q ss_pred EEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC-
Q 012655 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS- 311 (459)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~- 311 (459)
.+++..+...+.+.....+..+|..+.. ..+++|+|||+|.+...+.............+.++.++..++....
T Consensus 74 ~v~~~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 74 SMGGSSFIEMFVGLGASRVRDLFETAKK-----QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp CCCSCTTTTSCSSSCSSSSSTTHHHHHH-----SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred EechHHHHHhhcchHHHHHHHHHHHHHh-----cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 6777777777776666566677777665 3679999999999977653221111112223445667777776543
Q ss_pred CCCEEEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCc
Q 012655 312 SPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (459)
Q Consensus 312 ~~~viIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 389 (459)
..+++||+|||.++.+|+++++ ||+..++++.|+.++|.++++.+++... .....
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~---------~~~~~-------------- 205 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK---------LANDV-------------- 205 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC---------CCSSC--------------
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC---------CCCcc--------------
Confidence 3458999999999999999987 9999999999999999999987765420 00000
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhh--cCCCCCCHHHHHHHHHHH
Q 012655 390 PDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAAL--ANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 390 ~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~--~~~~~it~~d~~~Al~~~ 449 (459)
.+..+++.+.|++||+|+.++..|.... .+...++.+++.+|+...
T Consensus 206 --------------~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 206 --------------NLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp --------------CTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred --------------CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 1335677789999999999999884443 346789999998887653
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.89 E-value=2.5e-26 Score=253.73 Aligned_cols=218 Identities=29% Similarity=0.432 Sum_probs=167.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|+++++.+++|+.+.+++..+..+..... .+.+..++++||+||||||||+||+++|+.++.++ +.+++
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~-~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~---------i~v~~ 544 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFL-KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---------ISIKG 544 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTT-CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC---------CCCCC
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHH-hcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE---------EEEec
Confidence 599999999999999988765443332211 12344578899999999999999999999997665 77899
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEE
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~vi 316 (459)
.++.++|++++.+.+..+|+.++.. .|+++||||+|.+...+..... .......++++.|+..|+++....+++
T Consensus 545 ~~l~~~~~g~~~~~i~~~f~~a~~~-----~p~vl~iDEid~l~~~r~~~~~-~~~~~~~~v~~~LL~~ld~~~~~~~v~ 618 (806)
T 1ypw_A 545 PELLTMWFGESEANVREIFDKARQA-----APCVLFFDELDSIAKARGGNIG-DGGGAADRVINQILTEMDGMSTKKNVF 618 (806)
T ss_dssp SSSTTCCTTTSSHHHHHHHHHHHHH-----CSBCCCCSSHHHHCCTTTTCCS-HHHHHHHHHHHHHHTTCC------CCB
T ss_pred hHhhhhhcCccHHHHHHHHHHHHhc-----CCeEEEEEChhhhhhhccCCCC-CcchhHHHHHHHHHHHHhcccccCCeE
Confidence 9999999999999999999999874 7899999999999876632110 001234678899999999888888999
Q ss_pred EEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHh
Q 012655 317 ILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQE 394 (459)
Q Consensus 317 Ii~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 394 (459)
||+|||.++.+|+++++ ||+..++++.|+.++|.+||+.++++.. ...+.+
T Consensus 619 vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~---------~~~~~~------------------ 671 (806)
T 1ypw_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVD------------------ 671 (806)
T ss_dssp CCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-------------CCC------------------
T ss_pred EEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC---------CCcccC------------------
Confidence 99999999999999997 9999999999999999999998876531 011111
Q ss_pred hhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 395 ADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 395 ~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
+..+|+.+.||||++|+.++..|
T Consensus 672 ----------l~~la~~t~g~sgadi~~l~~~a 694 (806)
T 1ypw_A 672 ----------LEFLAKMTNGFSGADLTEICQRA 694 (806)
T ss_dssp ----------CSCSCGGGSSSCCHHHHHHHHHH
T ss_pred ----------HHHHHHhccccCHHHHHHHHHHH
Confidence 34556677888888888888777
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=1.2e-21 Score=192.04 Aligned_cols=175 Identities=18% Similarity=0.269 Sum_probs=127.1
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhh
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFV 271 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~il 271 (459)
.+++++|||||||||||++|+++|+.++.++ +.+++.++.+.|.++....+..+|..+..... ...++||
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~---------i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~-~~~~~vl 103 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINP---------IMMSAGELESGNAGEPAKLIRQRYREAAEIIR-KGNMCCL 103 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCC---------EEEEHHHHHCC---HHHHHHHHHHHHHHHHHT-TSSCCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCE---------EEEeHHHhhhccCchhHHHHHHHHHHHHHHHh-cCCCeEE
Confidence 3478999999999999999999999998776 89999999999999999999999998865443 3578999
Q ss_pred hhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-----------CCCCEEEEEecCCCCcccHHHh--ccCCeE
Q 012655 272 LIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-----------SSPNVIILTTSNITAAIDIAFV--DRADIK 338 (459)
Q Consensus 272 lIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-----------~~~~viIi~Ttn~~~~ld~al~--~R~~~~ 338 (459)
+|||+|.+...+.+.. ........+.+.|+..|+... ...+++||+|||.++.+|++++ +||+..
T Consensus 104 ~iDEiD~~~~~~~~~~--~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~ 181 (293)
T 3t15_A 104 FINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF 181 (293)
T ss_dssp EEECCC----------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEE
T ss_pred EEechhhhcCCCCCCc--cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCcee
Confidence 9999999987543211 111244577789999988432 4567999999999999999998 599988
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHH
Q 012655 339 AYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQ 393 (459)
Q Consensus 339 i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 393 (459)
++ .|+.++|.+|++.++.. ..++...+..+++++++.++.
T Consensus 182 i~--~P~~~~r~~Il~~~~~~-------------~~~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 182 YW--APTREDRIGVCTGIFRT-------------DNVPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp EE--CCCHHHHHHHHHHHHGG-------------GCCCHHHHHHHHHHSCSCCHH
T ss_pred Ee--CcCHHHHHHHHHHhccC-------------CCCCHHHHHHHhCCCCcccHH
Confidence 87 46999999999976653 123455666777777777664
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.84 E-value=1e-20 Score=209.03 Aligned_cols=216 Identities=27% Similarity=0.339 Sum_probs=173.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
..|++++|.+..++.|.+.+..+...++. +..+.+..++++||+|||||||||+|+++|+.++.++ +.++
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~-~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---------i~v~ 270 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPAL-FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---------FLIN 270 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGG-GTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---------EEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHH-HHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---------EEEE
Confidence 45999999999999999988775544432 1123344589999999999999999999999987655 8999
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCE
Q 012655 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV 315 (459)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~v 315 (459)
+.++.+.+.++....+..+|+.+... .++++||||++.+...+.. .......++++.+++.++++.....+
T Consensus 271 ~~~l~~~~~g~~~~~l~~vf~~a~~~-----~p~il~iDEid~l~~~~~~----~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 271 GPEIMSKLAGESESNLRKAFEEAEKN-----APAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp HHHHSSSSTTHHHHHHHHHHHHHHHH-----CSEEEEEESGGGTSCTTSC----CCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred chHhhhhhhhhHHHHHHHHHHHHHhc-----CCcEEEeccHHHhhhcccc----ccchHHHHHHHHHHHHhhhhcccccE
Confidence 99999999999999999999998763 7899999999998876521 11223467888999999998888889
Q ss_pred EEEEecCCCCcccHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHH
Q 012655 316 IILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQ 393 (459)
Q Consensus 316 iIi~Ttn~~~~ld~al~~--R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 393 (459)
+++++||.++.+|+++.+ ||+..+.++.|+.++|.+|++.++.... ....
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~---------l~~~------------------- 393 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---------LADD------------------- 393 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC---------CCTT-------------------
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCC---------Cccc-------------------
Confidence 999999999999999986 9999999999999999999987655421 0000
Q ss_pred hhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 394 EADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 394 ~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
..+..++..+.|++++++..++..+
T Consensus 394 ---------~~l~~la~~t~g~~g~dl~~l~~ea 418 (806)
T 1ypw_A 394 ---------VDLEQVANETHGHVGADLAALCSEA 418 (806)
T ss_dssp ---------CCTHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ---------chhHHHHHhhcCcchHHHHHHHHHH
Confidence 0255778889999999999888766
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.78 E-value=1e-18 Score=171.53 Aligned_cols=187 Identities=18% Similarity=0.196 Sum_probs=141.3
Q ss_pred cchhhhhhhhhhhHHHHHHHHHHHHH---HHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcce
Q 012655 154 FDGMWESLIYESGLKQRLLHYAASAL---MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (459)
Q Consensus 154 ~~~~~~~li~~~~~k~~L~~~~~~~~---~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (459)
...+|.+++|.+.+|+.+.+++.... .+.+.|+.+. ..+.+++|+||||||||++|+++|+.++... ......
T Consensus 26 ~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~--~~~~~vll~G~~GtGKT~la~~la~~l~~~~--~~~~~~ 101 (309)
T 3syl_A 26 LEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE--TPTLHMSFTGNPGTGKTTVALKMAGLLHRLG--YVRKGH 101 (309)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS--CCCCEEEEEECTTSSHHHHHHHHHHHHHHTT--SSSSCC
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC--CCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CcCCCc
Confidence 34566789999999999998876532 3444555431 2245799999999999999999999986422 123456
Q ss_pred EEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc
Q 012655 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (459)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~ 310 (459)
++.+++..+.+.+++.....+..+|..+ .+++|+|||+|.+...+. .......+++.|+..++.
T Consensus 102 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~--------~~~vl~iDEid~l~~~~~------~~~~~~~~~~~Ll~~l~~-- 165 (309)
T 3syl_A 102 LVSVTRDDLVGQYIGHTAPKTKEVLKRA--------MGGVLFIDEAYYLYRPDN------ERDYGQEAIEILLQVMEN-- 165 (309)
T ss_dssp EEEECGGGTCCSSTTCHHHHHHHHHHHH--------TTSEEEEETGGGSCCCC---------CCTHHHHHHHHHHHHH--
T ss_pred EEEEcHHHhhhhcccccHHHHHHHHHhc--------CCCEEEEEChhhhccCCC------cccccHHHHHHHHHHHhc--
Confidence 7999999999888888777777666654 357999999999875332 123456788899999886
Q ss_pred CCCCEEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 311 SSPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 311 ~~~~viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
...++++|+++|... .+++++++||+..+.+++|+.+++.+|++.++.+.
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 166 NRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp CTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 345677778877653 24789999999999999999999999999999873
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.78 E-value=3.4e-18 Score=172.02 Aligned_cols=223 Identities=19% Similarity=0.148 Sum_probs=151.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+..++.+....... ..|..+ ++.+||+||||||||++|+++++.++.. ..++.+++
T Consensus 42 ~~~~ivG~~~~~~~l~~l~~~~----~~~~~~-----~~~vLl~GppGtGKT~la~~la~~l~~~-------~~~~~~~~ 105 (368)
T 3uk6_A 42 ASQGMVGQLAARRAAGVVLEMI----REGKIA-----GRAVLIAGQPGTGKTAIAMGMAQALGPD-------TPFTAIAG 105 (368)
T ss_dssp EETTEESCHHHHHHHHHHHHHH----HTTCCT-----TCEEEEEESTTSSHHHHHHHHHHHHCSS-------CCEEEEEG
T ss_pred chhhccChHHHHHHHHHHHHHH----HcCCCC-----CCEEEEECCCCCCHHHHHHHHHHHhccc-------CCcccccc
Confidence 4899999999988866554321 123222 5789999999999999999999998631 23355555
Q ss_pred cccccccc-------------------------------------------------chhhHHHHHHHHHHHHHHHhcc-
Q 012655 237 HSLFSKWF-------------------------------------------------SESGKLVAKLFQKIQEMVEEEN- 266 (459)
Q Consensus 237 ~~l~~~~~-------------------------------------------------~e~~~~v~~~f~~~~~~~~~~~- 266 (459)
..+...+. ++....+...+..+........
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~ 185 (368)
T 3uk6_A 106 SEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGK 185 (368)
T ss_dssp GGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcc
Confidence 44332221 1122334445554443222211
Q ss_pred ---cchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEec-----------CCCCcccHHHh
Q 012655 267 ---NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTS-----------NITAAIDIAFV 332 (459)
Q Consensus 267 ---~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Tt-----------n~~~~ld~al~ 332 (459)
.|++|||||++.+.. ...+.|+..++.. ...+++++|. |.+..++++++
T Consensus 186 ~~~~~~vl~IDEi~~l~~---------------~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~ 248 (368)
T 3uk6_A 186 AEIIPGVLFIDEVHMLDI---------------ESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLL 248 (368)
T ss_dssp ---CBCEEEEESGGGSBH---------------HHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHH
T ss_pred ccccCceEEEhhccccCh---------------HHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHH
Confidence 257999999998743 4567777776552 2345666654 35677899999
Q ss_pred ccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHc
Q 012655 333 DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEAC 412 (459)
Q Consensus 333 ~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~ 412 (459)
+||.. +.+++|+.+++.+|++..+... +. . +. ...+..+++.+
T Consensus 249 sR~~~-i~~~~~~~~e~~~il~~~~~~~---~~----------~---------------~~--------~~~l~~l~~~~ 291 (368)
T 3uk6_A 249 DRLLI-VSTTPYSEKDTKQILRIRCEEE---DV----------E---------------MS--------EDAYTVLTRIG 291 (368)
T ss_dssp TTEEE-EEECCCCHHHHHHHHHHHHHHT---TC----------C---------------BC--------HHHHHHHHHHH
T ss_pred hhccE-EEecCCCHHHHHHHHHHHHHHc---CC----------C---------------CC--------HHHHHHHHHHh
Confidence 99966 7999999999999999887752 10 0 00 12367788888
Q ss_pred cCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHH
Q 012655 413 EGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 413 ~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~ 449 (459)
.|.++|.+..++..| .|...+...++.+++.+|+...
T Consensus 292 ~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 292 LETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 855999999999888 4556678899999999998763
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.76 E-value=2.4e-17 Score=164.08 Aligned_cols=209 Identities=17% Similarity=0.176 Sum_probs=146.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+..++.+..++...... +-. ..+++|+||||||||++|+++++.++.++ +.+++
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~---~~~------~~~vll~G~~GtGKT~la~~ia~~~~~~~---------~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKR---NEC------LDHILFSGPAGLGKTTLANIISYEMSANI---------KTTAA 88 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHT---TSC------CCCEEEECSTTSSHHHHHHHHHHHTTCCE---------EEEEG
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhc---CCC------CCeEEEECcCCCCHHHHHHHHHHHhCCCe---------EEecc
Confidence 4889999999999998887653221 111 24599999999999999999999987665 77777
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC-----
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS----- 311 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~----- 311 (459)
..+. ....+...+ .....+++|||||++.+.. ..++.|+..++....
T Consensus 89 ~~~~------~~~~~~~~~-------~~~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~l~~~~~~~~~~ 140 (338)
T 3pfi_A 89 PMIE------KSGDLAAIL-------TNLSEGDILFIDEIHRLSP---------------AIEEVLYPAMEDYRLDIIIG 140 (338)
T ss_dssp GGCC------SHHHHHHHH-------HTCCTTCEEEEETGGGCCH---------------HHHHHHHHHHHTSCC-----
T ss_pred hhcc------chhHHHHHH-------HhccCCCEEEEechhhcCH---------------HHHHHHHHHHHhccchhhcc
Confidence 6542 111222222 2234678999999998753 455667777765321
Q ss_pred -----------CCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccch
Q 012655 312 -----------SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNF 380 (459)
Q Consensus 312 -----------~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~ 380 (459)
.+++++|++||....+++++++||+..+.+++|+.+++.++++..+.... . .
T Consensus 141 ~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~---~----------~---- 203 (338)
T 3pfi_A 141 SGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN---K----------T---- 203 (338)
T ss_dssp ----CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT---C----------E----
T ss_pred cCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC---C----------C----
Confidence 12478999999999999999999999999999999999999998877631 0 0
Q ss_pred HHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHH
Q 012655 381 SILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVID 448 (459)
Q Consensus 381 ~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~ 448 (459)
+. ...+..+++.+.| +.|.+..++..+ .+...+...++.+++..++..
T Consensus 204 -----------~~--------~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 204 -----------CE--------EKAALEIAKRSRS-TPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp -----------EC--------HHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred -----------CC--------HHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 00 1125566666666 667777776665 444455566777777666643
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.75 E-value=2.4e-18 Score=168.49 Aligned_cols=187 Identities=14% Similarity=0.212 Sum_probs=125.0
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcc--ccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFL--VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~--i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
..+.+.++|.+.+++.+...+.... .+.+..... -..+.+++|+||||||||++|+++++.++.++ +
T Consensus 11 ~~l~~~i~G~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---------~ 79 (310)
T 1ofh_A 11 SELDQHIIGQADAKRAVAIALRNRW--RRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF---------I 79 (310)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHH--HTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCE---------E
T ss_pred HHHhhhcCChHHHHHHHHHHHHHHH--hhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---------E
Confidence 3456678999999999988776532 111111000 01145699999999999999999999997554 8
Q ss_pred EEccccccc-cccchh-hHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc
Q 012655 233 EVNAHSLFS-KWFSES-GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (459)
Q Consensus 233 ~i~~~~l~~-~~~~e~-~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~ 310 (459)
.+++..+.. .+.+.. ...+..++..+...+.....+++|+|||+|.+...... ++.......+.+.|+..++...
T Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~---~~~~~~~~~~~~~Ll~~le~~~ 156 (310)
T 1ofh_A 80 KVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGST 156 (310)
T ss_dssp EEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC---CSSHHHHHHHHHHHHHHHHCCE
T ss_pred EEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc---cccchhHHHHHHHHHHHhcCCe
Confidence 888887765 444432 34455555532111111124689999999998764321 1111111234677888887531
Q ss_pred --------CCCCEEEEEe----cCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHH
Q 012655 311 --------SSPNVIILTT----SNITAAIDIAFVDRADIKAYVGPPTLQARYEILRS 355 (459)
Q Consensus 311 --------~~~~viIi~T----tn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~ 355 (459)
...++++|++ ++.+..+++++.+||+..+.+++|+.+++.+|++.
T Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 157 VSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp EEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred EecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 2346777777 45677899999999999999999999999999984
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.75 E-value=6.5e-18 Score=175.46 Aligned_cols=110 Identities=22% Similarity=0.256 Sum_probs=84.6
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEE
Q 012655 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (459)
Q Consensus 155 ~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (459)
...|++++|.+++++.+..++.. -..|..+ ++++||+||||||||++|+++|+.++. ...++.+
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~----~~~~~~~-----~~~iLl~GppGtGKT~la~ala~~l~~-------~~~~~~~ 96 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVEL----IKSKKMA-----GRAVLLAGPPGTGKTALALAIAQELGS-------KVPFCPM 96 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHH----HHTTCCT-----TCEEEEECCTTSSHHHHHHHHHHHHCT-------TSCEEEE
T ss_pred hhchhhccCHHHHHHHHHHHHHH----HHhCCCC-----CCeEEEECCCcCCHHHHHHHHHHHhCC-------CceEEEE
Confidence 44699999999999988877643 1234333 678999999999999999999999972 1345899
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhh
Q 012655 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAAR 283 (459)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r 283 (459)
++..+.+++.++++. +..+|..+.. .....|++|||||+|.+...+
T Consensus 97 ~~~~~~~~~~~~~~~-~~~~f~~a~~--~~~~~~~il~iDEid~l~~~r 142 (456)
T 2c9o_A 97 VGSEVYSTEIKKTEV-LMENFRRAIG--LRIKETKEVYEGEVTELTPCE 142 (456)
T ss_dssp EGGGGCCSSSCHHHH-HHHHHHHTEE--EEEEEEEEEEEEEEEEEEEC-
T ss_pred eHHHHHHHhhhhhHH-HHHHHHHHHh--hhhcCCcEEEEechhhccccc
Confidence 999999999999887 7888877621 012478899999998876544
No 35
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.71 E-value=5.8e-17 Score=167.47 Aligned_cols=196 Identities=19% Similarity=0.222 Sum_probs=134.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcc-cchhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEEN-NLVFVLI 273 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~-~~~illI 273 (459)
..++|+||||+|||||++++++.+... .++..++++++..+...+...........| ..... .+.+|+|
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~----~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~vL~I 200 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN----EPDLRVMYITSEKFLNDLVDSMKEGKLNEF------REKYRKKVDILLI 200 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH----CCSSCEEEEEHHHHHHHHHHHHHTTCHHHH------HHHHTTTCSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEeeHHHHHHHHHHHHHcccHHHH------HHHhcCCCCEEEE
Confidence 349999999999999999999988432 234556788877654322211111000111 11113 6789999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCc---ccHHHhccCC--eEEEeCCCCHHH
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---IDIAFVDRAD--IKAYVGPPTLQA 348 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~---ld~al~~R~~--~~i~~~~P~~~~ 348 (459)
||++.+...+ ...+.++..++.+...+..+|++|++.+.. +++++++||. ..+.+++|+.++
T Consensus 201 DEi~~l~~~~-------------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~ 267 (440)
T 2z4s_A 201 DDVQFLIGKT-------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_dssp ECGGGGSSCH-------------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHH
T ss_pred eCcccccCCh-------------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHH
Confidence 9999886421 345667777777767777888888887765 7899999984 788999999999
Q ss_pred HHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHH
Q 012655 349 RYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAH 428 (459)
Q Consensus 349 r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~ 428 (459)
+.+|++..+... +. .+ .. ..+..||..+.| +.|.+..++..+.
T Consensus 268 r~~iL~~~~~~~---~~----------~i-----------~~------------e~l~~la~~~~g-n~R~l~~~L~~~~ 310 (440)
T 2z4s_A 268 RKSIARKMLEIE---HG----------EL-----------PE------------EVLNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_dssp HHHHHHHHHHHH---TC----------CC-----------CT------------THHHHHHHHCCS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CC----------CC-----------CH------------HHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 999999888652 11 00 00 125677888877 8888888887773
Q ss_pred Hhh-cCCCCCCHHHHHHHHHHHH
Q 012655 429 AAL-ANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 429 a~~-~~~~~it~~d~~~Al~~~~ 450 (459)
+.. .....+|.+++.+++.+..
T Consensus 311 ~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 311 VYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHSSSCCCHHHHHHHTSTTT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 332 2334799999988887654
No 36
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.70 E-value=7.3e-17 Score=160.24 Aligned_cols=236 Identities=21% Similarity=0.208 Sum_probs=144.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
.+++.++|.+++++.+...+.. +.+++|+||||||||++|+++++.++.++ +.++
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~----------------~~~vll~G~pGtGKT~la~~la~~~~~~~---------~~i~ 78 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT----------------GGHILLEGVPGLAKTLSVNTLAKTMDLDF---------HRIQ 78 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH----------------TCCEEEESCCCHHHHHHHHHHHHHTTCCE---------EEEE
T ss_pred HhccceeCcHHHHHHHHHHHHc----------------CCeEEEECCCCCcHHHHHHHHHHHhCCCe---------EEEe
Confidence 3567888998888887766543 24599999999999999999999987654 4455
Q ss_pred ccc------ccccccchhhHHHHHHHHHHHHHHHhccc---chhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHH
Q 012655 236 AHS------LFSKWFSESGKLVAKLFQKIQEMVEEENN---LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (459)
Q Consensus 236 ~~~------l~~~~~~e~~~~v~~~f~~~~~~~~~~~~---~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (459)
+.. +.+........ ........ .++++|||++.+.. ...+.|+..+
T Consensus 79 ~~~~~~~~~l~g~~~~~~~~----------~~~~~~~g~l~~~vl~iDEi~~~~~---------------~~~~~Ll~~l 133 (331)
T 2r44_A 79 FTPDLLPSDLIGTMIYNQHK----------GNFEVKKGPVFSNFILADEVNRSPA---------------KVQSALLECM 133 (331)
T ss_dssp CCTTCCHHHHHEEEEEETTT----------TEEEEEECTTCSSEEEEETGGGSCH---------------HHHHHHHHHH
T ss_pred cCCCCChhhcCCceeecCCC----------CceEeccCcccccEEEEEccccCCH---------------HHHHHHHHHH
Confidence 421 11111000000 00000011 26999999998644 4566777777
Q ss_pred Hhh---------cCCCCEEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccc
Q 012655 307 DKL---------KSSPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDC 372 (459)
Q Consensus 307 ~~l---------~~~~~viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~ 372 (459)
+.. ....++++++|+|..+ .+++++++||+..+.+++|+.+++.+|++..+..... .. ..
T Consensus 134 ~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~-~~-----~~ 207 (331)
T 2r44_A 134 QEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFN-YQ-----VQ 207 (331)
T ss_dssp HHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCC-CC-----CC
T ss_pred hcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcc-hh-----cc
Confidence 642 1244678889998654 3799999999999999999999999999988754210 00 00
Q ss_pred cCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHH----------------HccCCChHHHhchHHHH--HHhhcCC
Q 012655 373 DQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAE----------------ACEGLSGRSLRKLPFLA--HAALANP 434 (459)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~----------------~~~G~Sgr~L~~L~~~a--~a~~~~~ 434 (459)
.......+..+........+.+. ....+..++. ...|.|.|.+..+...| .|...+.
T Consensus 208 ~~~~~~~i~~~~~~~~~v~~~~~-----~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~ 282 (331)
T 2r44_A 208 KIVSKNDVLEIRNEINKVTISES-----LEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNR 282 (331)
T ss_dssp CCSCHHHHHHHHHHHHTCBCCHH-----HHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHhccCCCCHH-----HHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCC
Confidence 01111111111111000001000 0111222221 12377999999999887 5556788
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 012655 435 NGCDPSKFLLTVIDTARK 452 (459)
Q Consensus 435 ~~it~~d~~~Al~~~~~~ 452 (459)
..++.+|+.+++.....+
T Consensus 283 ~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 283 DYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp SBCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhHh
Confidence 889999999999877643
No 37
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.70 E-value=2.2e-16 Score=155.88 Aligned_cols=210 Identities=20% Similarity=0.237 Sum_probs=144.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+..++.+...+...... +-. +..++|+||+|||||++|+++++.++.++ +.+++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~---~~~------~~~vll~G~~GtGKT~la~~i~~~~~~~~---------~~~~~ 71 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKAR---KEP------LEHLLLFGPPGLGKTTLAHVIAHELGVNL---------RVTSG 71 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHH---CSC------CCCCEEECCTTCCCHHHHHHHHHHHTCCE---------EEECT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHcc---CCC------CCcEEEECCCCCCHHHHHHHHHHHhCCCE---------EEEec
Confidence 3788999999988888877643221 111 34599999999999999999999987554 67777
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc------
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK------ 310 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~------ 310 (459)
..+.. ...+...+.. ....+.++||||++.+.. ...+.++..++...
T Consensus 72 ~~~~~------~~~l~~~l~~------~~~~~~~l~lDEi~~l~~---------------~~~~~L~~~l~~~~~~~v~~ 124 (324)
T 1hqc_A 72 PAIEK------PGDLAAILAN------SLEEGDILFIDEIHRLSR---------------QAEEHLYPAMEDFVMDIVIG 124 (324)
T ss_dssp TTCCS------HHHHHHHHTT------TCCTTCEEEETTTTSCCH---------------HHHHHHHHHHHHSEEEECCS
T ss_pred cccCC------hHHHHHHHHH------hccCCCEEEEECCccccc---------------chHHHHHHHHHhhhhHHhcc
Confidence 65421 1111111111 124678999999997754 33456666666532
Q ss_pred ----------CCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccch
Q 012655 311 ----------SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNF 380 (459)
Q Consensus 311 ----------~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~ 380 (459)
....+++|++||.+..+++++.+||+..+.+++|+.+++.++++.++... +. .
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~---~~----------~---- 187 (324)
T 1hqc_A 125 QGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLL---GV----------R---- 187 (324)
T ss_dssp SSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTT---TC----------C----
T ss_pred ccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhc---CC----------C----
Confidence 11357899999999999999999999999999999999999988877642 10 0
Q ss_pred HHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHH--HhhcCCCCCCHHHHHHHHHH
Q 012655 381 SILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAH--AALANPNGCDPSKFLLTVID 448 (459)
Q Consensus 381 ~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~--a~~~~~~~it~~d~~~Al~~ 448 (459)
+. ...+..+++.+.| +.|.+..++..+. +...+...++.+++..++..
T Consensus 188 -----------~~--------~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 188 -----------IT--------EEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp -----------CC--------HHHHHHHHHHSCS-CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred -----------CC--------HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 00 1136677777876 6788888877773 22335567888887776643
No 38
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.70 E-value=1.9e-16 Score=159.44 Aligned_cols=187 Identities=21% Similarity=0.259 Sum_probs=125.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccc-cCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLV-SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i-~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
-+.++|++.+++.+...+.........+...... ..+.++||+||||||||++|+++|+.++.++ +.+++
T Consensus 14 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~---------~~~~~ 84 (363)
T 3hws_A 14 DDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPF---------TMADA 84 (363)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE---------EEEEH
T ss_pred HhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCE---------EEech
Confidence 3456899999999998886544444333221111 1257799999999999999999999997666 88998
Q ss_pred ccccc-cccchh-hHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc----
Q 012655 237 HSLFS-KWFSES-GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK---- 310 (459)
Q Consensus 237 ~~l~~-~~~~e~-~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~---- 310 (459)
..+.. .|++.. ...+..+|..+...+. ...+++|||||+|.+...+.....+. .....++++.|+..|++..
T Consensus 85 ~~l~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~vl~lDEid~l~~~~~~~~~~~-~~~~~~~~~~Ll~~leg~~~~~~ 162 (363)
T 3hws_A 85 TTLTEAGYVGEDVENIIQKLLQKCDYDVQ-KAQRGIVYIDQIDKISRKSDNPSITR-DVSGEGVQQALLKLIEGTVAAVP 162 (363)
T ss_dssp HHHTTCHHHHHHHTHHHHHHHHHTTTCHH-HHHHCEEEEECHHHHCCCSSCC---C-HHHHHHHHHHHHHHHHCC-----
T ss_pred HHhcccccccccHHHHHHHHHHHhhhhHH-hcCCcEEEEeChhhhccccccccccc-ccchHHHHHHHHHHhcCceeecc
Confidence 88764 366654 4556666665421111 12568999999999977543211111 0112348899999998321
Q ss_pred ---------------CCCCEEEEEecCCC----------Cc-----------------------------------ccHH
Q 012655 311 ---------------SSPNVIILTTSNIT----------AA-----------------------------------IDIA 330 (459)
Q Consensus 311 ---------------~~~~viIi~Ttn~~----------~~-----------------------------------ld~a 330 (459)
...++++|+++|.. .. +.+.
T Consensus 163 ~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~ 242 (363)
T 3hws_A 163 PQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPE 242 (363)
T ss_dssp -----------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHH
T ss_pred CccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHH
Confidence 12334444444432 11 6789
Q ss_pred HhccCCeEEEeCCCCHHHHHHHHHH
Q 012655 331 FVDRADIKAYVGPPTLQARYEILRS 355 (459)
Q Consensus 331 l~~R~~~~i~~~~P~~~~r~~Il~~ 355 (459)
|++||+.++.+.+|+.+.+.+|+..
T Consensus 243 l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 243 FIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred HhcccCeeeecCCCCHHHHHHHHHH
Confidence 9999999999999999999999887
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.69 E-value=1.2e-16 Score=154.30 Aligned_cols=134 Identities=22% Similarity=0.317 Sum_probs=95.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccc-cchhhHHHHHHHHHHHHHHHhcccchhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW-FSESGKLVAKLFQKIQEMVEEENNLVFVL 272 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~-~~e~~~~v~~~f~~~~~~~~~~~~~~ill 272 (459)
+.++||+||||||||++|+++|+.++.++ +.+++.+.+... .......+..+|..+.. ..+++|+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~---------~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~vl~ 129 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPF---------IKICSPDKMIGFSETAKCQAMKKIFDDAYK-----SQLSCVV 129 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSE---------EEEECGGGCTTCCHHHHHHHHHHHHHHHHT-----SSEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCE---------EEEeCHHHhcCCchHHHHHHHHHHHHHHHh-----cCCcEEE
Confidence 56799999999999999999999987665 777765532111 11122345556665542 4678999
Q ss_pred hhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC-CCCEEEEEecCCCCcccH-HHhccCCeEEEeCCCCH
Q 012655 273 IDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS-SPNVIILTTSNITAAIDI-AFVDRADIKAYVGPPTL 346 (459)
Q Consensus 273 IDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~-~~~viIi~Ttn~~~~ld~-al~~R~~~~i~~~~P~~ 346 (459)
|||+|.+...+. ..+.....+++.|...++.... ..+++||+|||.++.+++ .+.+||+..+.+|+++.
T Consensus 130 iDEid~l~~~~~-----~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~ 200 (272)
T 1d2n_A 130 VDDIERLLDYVP-----IGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT 200 (272)
T ss_dssp ECCHHHHTTCBT-----TTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE
T ss_pred EEChhhhhccCC-----CChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccH
Confidence 999999966432 1223345667777777766543 346889999999988888 67799999999987776
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.68 E-value=4e-17 Score=172.89 Aligned_cols=175 Identities=23% Similarity=0.297 Sum_probs=111.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
.++++++|.+++++.+.+++....... .+ .+..++|+|||||||||+++++|+.++.++ ..++
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~--~~------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~---------~~i~ 140 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTK--SL------KGPILCLAGPPGVGKTSLAKSIAKSLGRKF---------VRIS 140 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSS--SC------CSCEEEEESSSSSSHHHHHHHHHHHHTCEE---------EEEC
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcc--cC------CCCEEEEECCCCCCHHHHHHHHHHhcCCCe---------EEEE
Confidence 468889999999999987765322211 11 367899999999999999999999997665 5555
Q ss_pred cccccc--cccchhhHHHHHHHHHHHHHHHhc-ccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC-
Q 012655 236 AHSLFS--KWFSESGKLVAKLFQKIQEMVEEE-NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS- 311 (459)
Q Consensus 236 ~~~l~~--~~~~e~~~~v~~~f~~~~~~~~~~-~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~- 311 (459)
+..+.. ..++.....+....+.....+... ....++||||+|.+...++. ..++.|+..|+....
T Consensus 141 ~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~-----------~~~~~LL~~ld~~~~~ 209 (543)
T 3m6a_A 141 LGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRG-----------DPSSAMLEVLDPEQNS 209 (543)
T ss_dssp CCC--------------------CHHHHHHTTCSSSEEEEEEESSSCC--------------------CCGGGTCTTTTT
T ss_pred ecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhcc-----------CHHHHHHHHHhhhhcc
Confidence 544322 111111122222222222222221 12349999999998764321 234556666653221
Q ss_pred ------------CCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 312 ------------SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 312 ------------~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
..+++||+|+|.+..++++|++|| .++.++.|+.+++.+|++.++..
T Consensus 210 ~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~ 268 (543)
T 3m6a_A 210 SFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLP 268 (543)
T ss_dssp BCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHH
T ss_pred eeecccCCeeecccceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHH
Confidence 156899999999999999999999 47899999999999999988744
No 41
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.68 E-value=3.6e-16 Score=157.42 Aligned_cols=238 Identities=18% Similarity=0.202 Sum_probs=147.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
++++|.+...+.+..++.... .+ ..+..++|+||||||||++++++++.+.........+..++.+++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~----~~------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL----RG------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT----SS------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCHHHHHHHHHHHHHHHH----cC------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 678888888888877654311 01 11466999999999999999999998832210000124458888765
Q ss_pred ccccc--cc-----------hhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH
Q 012655 239 LFSKW--FS-----------ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (459)
Q Consensus 239 l~~~~--~~-----------e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (459)
..+.. .. ..+.....++..+...+.....+.+|+|||++.+...+ .....+..++..
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRITRI 158 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHhhc
Confidence 43211 00 00101223334444433333457899999999997631 012444444444
Q ss_pred HHhhcCCCCEEEEEecCCC---CcccHHHhccCCe-EEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchH
Q 012655 306 MDKLKSSPNVIILTTSNIT---AAIDIAFVDRADI-KAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFS 381 (459)
Q Consensus 306 l~~l~~~~~viIi~Ttn~~---~~ld~al~~R~~~-~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 381 (459)
+.......++++|+++|.+ ..+++.+.+||.. .+.+++++.+++.++++..+........+.
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-------------- 224 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-------------- 224 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC--------------
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC--------------
Confidence 4332214567778888776 6789999999985 889999999999999999887531111100
Q ss_pred HHhhcCCchhHHhhhhhhHHHHHHHHHHHHcc---CCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHH
Q 012655 382 ILKEKLSNPDIQEADRSQHFYKQLLEAAEACE---GLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTAR 451 (459)
Q Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~---G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~ 451 (459)
+ ..+..+++.+. | ..|.+..++..| .+...+...++.+++..|+.....
T Consensus 225 ------------~--------~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 225 ------------P--------DVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp ------------S--------SHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred ------------H--------HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 0 01445566665 6 567777777766 333446788999999999877643
No 42
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.66 E-value=2.6e-15 Score=138.56 Aligned_cols=206 Identities=22% Similarity=0.206 Sum_probs=137.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+..++.+.+++... + ...++|+||+|+|||++++.+++.+.... ....++.+++
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~------~--------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~----~~~~~~~~~~ 76 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERK------N--------IPHLLFSGPPGTGKTATAIALARDLFGEN----WRDNFIEMNA 76 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT------C--------CCCEEEECSTTSSHHHHHHHHHHHHHGGG----GGGGEEEEET
T ss_pred CHHHHcCcHHHHHHHHHHHhCC------C--------CCeEEEECCCCCCHHHHHHHHHHHHhccc----cccceEEecc
Confidence 4788999999888888876531 1 23499999999999999999999874321 1233466666
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHh----cccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEE----ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~----~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
..... ...+.. ........ ...+.+|+|||++.+.. ...+.++..++. ..
T Consensus 77 ~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~l~~~l~~--~~ 130 (226)
T 2chg_A 77 SDERG------IDVVRH---KIKEFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEM--YS 130 (226)
T ss_dssp TCTTC------HHHHHH---HHHHHHTSCCSTTCSCEEEEEETGGGSCH---------------HHHHHHHHHHHH--TT
T ss_pred ccccC------hHHHHH---HHHHHhcccCCCccCceEEEEeChhhcCH---------------HHHHHHHHHHHh--cC
Confidence 44321 111111 11221111 24578999999998754 234566666665 34
Q ss_pred CCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhH
Q 012655 313 PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDI 392 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 392 (459)
.++.+|+++|.+..+++++.+|+. .+.+++|+.++..+++...+... +. . +
T Consensus 131 ~~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~---~~----------~---------------~ 181 (226)
T 2chg_A 131 KSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKE---GV----------K---------------I 181 (226)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHH---TC----------C---------------B
T ss_pred CCCeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHc---CC----------C---------------C
Confidence 567778888988899999999996 88999999999999998877653 11 0 0
Q ss_pred HhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCCCHHHHHHHHH
Q 012655 393 QEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLTVI 447 (459)
Q Consensus 393 ~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~~Al~ 447 (459)
. ...+..+++.+.| +.|.+..++..+... ...++.+++..++.
T Consensus 182 ~--------~~~~~~l~~~~~g-~~r~l~~~l~~~~~~---~~~I~~~~v~~~~~ 224 (226)
T 2chg_A 182 T--------EDGLEALIYISGG-DFRKAINALQGAAAI---GEVVDADTIYQITA 224 (226)
T ss_dssp C--------HHHHHHHHHHHTT-CHHHHHHHHHHHHHT---CSCBCHHHHHHHHH
T ss_pred C--------HHHHHHHHHHcCC-CHHHHHHHHHHHHhc---CceecHHHHHHHhc
Confidence 0 1125567777777 566655555444322 26899999988875
No 43
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.66 E-value=1.1e-16 Score=163.80 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=80.8
Q ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccc-cCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCc
Q 012655 150 PAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLV-SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (459)
Q Consensus 150 P~~~~~~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i-~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (459)
|..-...+.+.++|++++|+.+...+.++.......-. ... .+++++||+||||||||++++++|+.++.++
T Consensus 6 P~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~-~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~------ 78 (444)
T 1g41_A 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEP-LRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF------ 78 (444)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTT-TTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccc-cccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc------
Confidence 44444556678899999999998888765443332111 111 1357799999999999999999999998766
Q ss_pred ceEEEEccccccc-cccch-hhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHH
Q 012655 229 CQLVEVNAHSLFS-KWFSE-SGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (459)
Q Consensus 229 ~~~i~i~~~~l~~-~~~~e-~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (459)
+.+++..+.. .|.+. ....++.+|+.+.. ++++||++.+.... ......++++.|+..|
T Consensus 79 ---~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~---------~~~~De~d~~~~~~-------~~~~e~rvl~~LL~~~ 139 (444)
T 1g41_A 79 ---IKVEATKFTEVGYVGKEVDSIIRDLTDSAMK---------LVRQQEIAKNRARA-------EDVAEERILDALLPPA 139 (444)
T ss_dssp ---EEEEGGGGC----CCCCTHHHHHHHHHHHHH---------HHHHHHHHSCC--------------------------
T ss_pred ---eeecchhhcccceeeccHHHHHHHHHHHHHh---------cchhhhhhhhhccc-------hhhHHHHHHHHHHHHh
Confidence 8889888877 58885 67888888887664 35689987764422 1223468999999999
Q ss_pred HhhcCCCCEEEEEe-cCCCCcccHHHh--ccCCeEEEeCCCCHH-HHHHHH
Q 012655 307 DKLKSSPNVIILTT-SNITAAIDIAFV--DRADIKAYVGPPTLQ-ARYEIL 353 (459)
Q Consensus 307 ~~l~~~~~viIi~T-tn~~~~ld~al~--~R~~~~i~~~~P~~~-~r~~Il 353 (459)
+++.....+ +++ ||.++.+|++++ +|||+.++++.|+.. .+.+|+
T Consensus 140 dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 140 KNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------------------------------
T ss_pred hcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 998655544 444 999999999999 699999999999987 677765
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.65 E-value=5.1e-16 Score=153.56 Aligned_cols=158 Identities=21% Similarity=0.260 Sum_probs=114.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+++++.+.+++.. |-. +..+|++||||||||++++++++.++.++ +++++
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~-------~~~------~~~~L~~G~~G~GKT~la~~la~~l~~~~---------~~i~~ 81 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSK-------GKI------PHIILHSPSPGTGKTTVAKALCHDVNADM---------MFVNG 81 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHT-------TCC------CSEEEECSSTTSSHHHHHHHHHHHTTEEE---------EEEET
T ss_pred CHHHHhCcHHHHHHHHHHHHc-------CCC------CeEEEeeCcCCCCHHHHHHHHHHHhCCCE---------EEEcc
Confidence 478999999999888887652 221 35688899999999999999999997554 88887
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEE
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVI 316 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~vi 316 (459)
.+.. ...+...+............+.+++|||+|.+.. ....+.|+..++... .++.
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------------~~~~~~L~~~le~~~--~~~~ 138 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------------AESQRHLRSFMEAYS--SNCS 138 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------------HHHHHHHHHHHHHHG--GGCE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------------HHHHHHHHHHHHhCC--CCcE
Confidence 6531 2223332222221111112578999999998861 134567777777643 4567
Q ss_pred EEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 317 ILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 317 Ii~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
+|+|+|.+..+++++.+|| ..+.+++|+.+++.+|++..+..+
T Consensus 139 iI~~~n~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l 181 (324)
T 3u61_B 139 IIITANNIDGIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRL 181 (324)
T ss_dssp EEEEESSGGGSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCccccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHH
Confidence 7788999999999999999 579999999999999888877664
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.65 E-value=1.4e-15 Score=157.10 Aligned_cols=210 Identities=16% Similarity=0.208 Sum_probs=137.9
Q ss_pred hhhhhhhhhhHH---HHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEE
Q 012655 157 MWESLIYESGLK---QRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (459)
Q Consensus 157 ~~~~li~~~~~k---~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (459)
.|++++|++.+. +.|...+... . ...++|+||||||||++|+++++.++.++ +.
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~------~--------~~~vLL~GppGtGKTtlAr~ia~~~~~~f---------~~ 80 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG------H--------LHSMILWGPPGTGKTTLAEVIARYANADV---------ER 80 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT------C--------CCEEEEECSTTSSHHHHHHHHHHHTTCEE---------EE
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC------C--------CcEEEEECCCCCcHHHHHHHHHHHhCCCe---------EE
Confidence 478899999887 5666555431 1 13599999999999999999999997655 66
Q ss_pred EccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCC
Q 012655 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (459)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~ 313 (459)
+++... ..+.++.++..+..... ...+.+|||||++.+... .++.|+..++. +
T Consensus 81 l~a~~~-------~~~~ir~~~~~a~~~~~-~~~~~iLfIDEI~~l~~~---------------~q~~LL~~le~----~ 133 (447)
T 3pvs_A 81 ISAVTS-------GVKEIREAIERARQNRN-AGRRTILFVDEVHRFNKS---------------QQDAFLPHIED----G 133 (447)
T ss_dssp EETTTC-------CHHHHHHHHHHHHHHHH-TTCCEEEEEETTTCC---------------------CCHHHHHT----T
T ss_pred EEeccC-------CHHHHHHHHHHHHHhhh-cCCCcEEEEeChhhhCHH---------------HHHHHHHHHhc----C
Confidence 665332 23456666666654432 245789999999988542 23456666654 3
Q ss_pred CEEEEEec--CCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchh
Q 012655 314 NVIILTTS--NITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPD 391 (459)
Q Consensus 314 ~viIi~Tt--n~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 391 (459)
.+++|++| |....+++++++|+. ++.+++|+.+++.++++..+..... +. . ... ..
T Consensus 134 ~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~-~~-~----~~~---------------~~ 191 (447)
T 3pvs_A 134 TITFIGATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTR-GY-G----GQD---------------IV 191 (447)
T ss_dssp SCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTT-SS-T----TSS---------------EE
T ss_pred ceEEEecCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhh-hh-c----ccc---------------Cc
Confidence 45555444 555678999999994 7779999999999999998886311 00 0 000 00
Q ss_pred HHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhc----CCCCCCHHHHHHHHH
Q 012655 392 IQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALA----NPNGCDPSKFLLTVI 447 (459)
Q Consensus 392 i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~----~~~~it~~d~~~Al~ 447 (459)
+. ...+..+++.+.| +.|.+..++..+..... +...||.+++.+++.
T Consensus 192 i~--------~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 192 LP--------DETRRAIAELVNG-DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp CC--------HHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred CC--------HHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 11 1236677777777 77777777777744433 335688888877764
No 46
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.65 E-value=1.3e-15 Score=151.72 Aligned_cols=259 Identities=18% Similarity=0.206 Sum_probs=138.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcc-------cccCCCC--
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI-------RFSSRYP-- 227 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~-------~~~~~~~-- 227 (459)
.|++++|.+.+++.+...... .. +.++||+||||||||++|+++++.++. ++.....
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~----~~----------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 87 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVD----PG----------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEM 87 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHC----GG----------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGG
T ss_pred CchhccChHHHHHHHHHHhhC----CC----------CceEEEECCCCccHHHHHHHHHHhCcccccccccccccccccc
Confidence 488899998877664333211 11 234999999999999999999998863 1100000
Q ss_pred -----c----------ceEEEEccccccccccchhhHHHHHHHHHHHH-----HHHhcccchhhhhhhhHhHHHhhhhcc
Q 012655 228 -----Q----------CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQE-----MVEEENNLVFVLIDEVESLAAARKAAL 287 (459)
Q Consensus 228 -----~----------~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~-----~~~~~~~~~illIDEid~l~~~r~~~l 287 (459)
. ..++.+.........++.. .+...+..... .+. ....+++||||++.+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~-~a~~~vl~iDEi~~l~~------ 158 (350)
T 1g8p_A 88 IPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLA-RANRGYLYIDECNLLED------ 158 (350)
T ss_dssp SCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHH-HHTTEEEEETTGGGSCH------
T ss_pred ccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceee-ecCCCEEEEeChhhCCH------
Confidence 0 0111111100000011100 00111111100 000 01357999999998754
Q ss_pred CCCCCCchHHHHHHHHHHHHh----hcC-------CCCEEEEEecCCCC-cccHHHhccCCeEEEeCCC-CHHHHHHHHH
Q 012655 288 SGSEPSDSIRVVNALLTQMDK----LKS-------SPNVIILTTSNITA-AIDIAFVDRADIKAYVGPP-TLQARYEILR 354 (459)
Q Consensus 288 s~~e~~~~~~~~~~ll~~l~~----l~~-------~~~viIi~Ttn~~~-~ld~al~~R~~~~i~~~~P-~~~~r~~Il~ 354 (459)
..++.|+..++. +.. ..++++|+|+|... .+++++++||+..+.+++| +.+.+.+|++
T Consensus 159 ---------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 159 ---------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp ---------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHH
T ss_pred ---------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence 345677777664 111 13688999999754 7899999999999999998 6778889998
Q ss_pred HHHHHHHHhcc-ccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccC---CChHHHhchHHHH--H
Q 012655 355 SCLQELIRTGI-ISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEG---LSGRSLRKLPFLA--H 428 (459)
Q Consensus 355 ~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G---~Sgr~L~~L~~~a--~ 428 (459)
..+........ +.............+...........+. ...+..+++.+.| -+.|.+..++..| .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls--------~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~ 301 (350)
T 1g8p_A 230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP--------NTALYDCAALCIALGSDGLRGELTLLRSARAL 301 (350)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC--------HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHH
T ss_pred HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC--------HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 86542100000 0000000000000000000000000010 1124444444433 3679999999887 4
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHHhh
Q 012655 429 AALANPNGCDPSKFLLTVIDTARKERS 455 (459)
Q Consensus 429 a~~~~~~~it~~d~~~Al~~~~~~~~~ 455 (459)
|...+...++.+|+.+|+.........
T Consensus 302 A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 302 AALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp HHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred HHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 445677789999999999887665544
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.64 E-value=4.7e-16 Score=154.02 Aligned_cols=139 Identities=20% Similarity=0.299 Sum_probs=97.4
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (459)
..++|+||||||||++++++++.+... +..++++++..+...+...........|.... ..+.+|+||
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~vL~iD 105 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR------GYRVIYSSADDFAQAMVEHLKKGTINEFRNMY------KSVDLLLLD 105 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT------TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH------HTCSEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC------CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh------cCCCEEEEc
Confidence 459999999999999999999988321 23447888776644332222111111121111 247899999
Q ss_pred hhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCC---cccHHHhccCC--eEEEeCCCCHHHH
Q 012655 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITA---AIDIAFVDRAD--IKAYVGPPTLQAR 349 (459)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~---~ld~al~~R~~--~~i~~~~P~~~~r 349 (459)
|++.+...+ .....++..++.+...+..+|+++++.+. .+++++.+||+ ..+.+++ +.+++
T Consensus 106 Ei~~l~~~~-------------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~ 171 (324)
T 1l8q_A 106 DVQFLSGKE-------------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTR 171 (324)
T ss_dssp CGGGGTTCH-------------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHH
T ss_pred CcccccCCh-------------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHH
Confidence 999886421 33455666666665566778888887776 57999999985 7889999 99999
Q ss_pred HHHHHHHHHH
Q 012655 350 YEILRSCLQE 359 (459)
Q Consensus 350 ~~Il~~~l~~ 359 (459)
.+|++..+..
T Consensus 172 ~~il~~~~~~ 181 (324)
T 1l8q_A 172 FKIIKEKLKE 181 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 48
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=3.5e-15 Score=150.52 Aligned_cols=228 Identities=15% Similarity=0.116 Sum_probs=141.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc-CCCC-cceEEEEcc
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYP-QCQLVEVNA 236 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~-~~~~i~i~~ 236 (459)
++++|.+...+.+...+..... +-. ++.++|+||||||||++++++++.+..... .... ...++.+++
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----~~~------~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----NEV------KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----TCC------CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----CCC------CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 6789999888888887754321 111 457999999999999999999998732210 0001 345588887
Q ss_pred cccc-ccc--cchhhHH------------HHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHH-HH
Q 012655 237 HSLF-SKW--FSESGKL------------VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRV-VN 300 (459)
Q Consensus 237 ~~l~-~~~--~~e~~~~------------v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~-~~ 300 (459)
.... ... +...... ...++..+...+.. ...+|+|||+|.+..... ... +.
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~vlilDEi~~l~~~~~-----------~~~~l~ 156 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN--IRAIIYLDEVDTLVKRRG-----------GDIVLY 156 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS--SCEEEEEETTHHHHHSTT-----------SHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc--CCCEEEEECHHHhccCCC-----------CceeHH
Confidence 6543 110 0000000 12223333332221 223999999999976320 122 33
Q ss_pred HHHHHHHhhcCCCCEEEEEecCCC---CcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcc
Q 012655 301 ALLTQMDKLKSSPNVIILTTSNIT---AAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSML 377 (459)
Q Consensus 301 ~ll~~l~~l~~~~~viIi~Ttn~~---~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l 377 (459)
.++.. . .++.+|+|+|.. ..+++.+.+||+..+.+++++.++..++++..+........+
T Consensus 157 ~l~~~----~--~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~----------- 219 (384)
T 2qby_B 157 QLLRS----D--ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY----------- 219 (384)
T ss_dssp HHHTS----S--SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-----------
T ss_pred HHhcC----C--cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-----------
Confidence 33322 2 677888888876 678999999998899999999999999999988642110000
Q ss_pred cchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHcc---CCChHHHhchHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 012655 378 PNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACE---GLSGRSLRKLPFLAHAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 378 ~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~---G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
. ...+..+++.+. | ..|.+..++..|.....+...++.+++..|+....
T Consensus 220 ---------------~--------~~~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 220 ---------------D--------DEILSYIAAISAKEHG-DARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp ---------------C--------SHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH
T ss_pred ---------------C--------HHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 0 012455666666 4 45656666666643334667899999999987764
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.63 E-value=4.1e-15 Score=145.82 Aligned_cols=175 Identities=21% Similarity=0.267 Sum_probs=118.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
.+.+.++|.+.+++.+...+..... ++... -.....++|+||||||||++|+++++.+.. ....++.++
T Consensus 14 ~l~~~i~G~~~~~~~l~~~i~~~~~----~~~~~-~~~~~~~ll~G~~GtGKt~la~~la~~~~~------~~~~~~~~~ 82 (311)
T 4fcw_A 14 ELHKRVVGQDEAIRAVADAIRRARA----GLKDP-NRPIGSFLFLGPTGVGKTELAKTLAATLFD------TEEAMIRID 82 (311)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHHH----TCSCT-TSCSEEEEEESCSSSSHHHHHHHHHHHHHS------CGGGEEEEE
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHhc----CCCCC-CCCceEEEEECCCCcCHHHHHHHHHHHHcC------CCcceEEee
Confidence 4567788999999888888765321 21110 001246999999999999999999999842 223457888
Q ss_pred cccccccc-----cchh----hHH-HHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH
Q 012655 236 AHSLFSKW-----FSES----GKL-VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (459)
Q Consensus 236 ~~~l~~~~-----~~e~----~~~-v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (459)
+..+.... ++.. +.. ...+...... ...++++|||+|.+.. .+++.|+..
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-----~~~~vl~lDEi~~l~~---------------~~~~~Ll~~ 142 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-----RPYSVILFDAIEKAHP---------------DVFNILLQM 142 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHH-----CSSEEEEEETGGGSCH---------------HHHHHHHHH
T ss_pred cccccccccHHHhcCCCCccccccccchHHHHHHh-----CCCeEEEEeChhhcCH---------------HHHHHHHHH
Confidence 77654321 1100 000 0111111111 3457999999998743 567788888
Q ss_pred HHhhc---------CCCCEEEEEecCC--------------------------CCcccHHHhccCCeEEEeCCCCHHHHH
Q 012655 306 MDKLK---------SSPNVIILTTSNI--------------------------TAAIDIAFVDRADIKAYVGPPTLQARY 350 (459)
Q Consensus 306 l~~l~---------~~~~viIi~Ttn~--------------------------~~~ld~al~~R~~~~i~~~~P~~~~r~ 350 (459)
|+.-. ...++++|+|||. ...++++|++||+..+.+++|+.+++.
T Consensus 143 le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~ 222 (311)
T 4fcw_A 143 LDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIR 222 (311)
T ss_dssp HHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHH
T ss_pred HhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHH
Confidence 87532 1136789999998 456788999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012655 351 EILRSCLQELI 361 (459)
Q Consensus 351 ~Il~~~l~~~~ 361 (459)
+|++.++.++.
T Consensus 223 ~i~~~~l~~~~ 233 (311)
T 4fcw_A 223 QIVEIQMSYLR 233 (311)
T ss_dssp HHHHHHTHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888753
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.63 E-value=5.2e-15 Score=138.17 Aligned_cols=213 Identities=21% Similarity=0.239 Sum_probs=139.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCc--------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ-------- 228 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~-------- 228 (459)
.|++++|.+..++.+...+.. +-. +..++|+||+|+|||++++.+++.+..........
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~-------~~~------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSL-------GRI------HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHH-------TCC------CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 477899999988888877643 111 24699999999999999999999886432111000
Q ss_pred -------ceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 229 -------CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 229 -------~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
..++.++... ......+..++..+... .....+.+|+|||++.+.. ...+.
T Consensus 88 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~vlviDe~~~l~~---------------~~~~~ 145 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYA-PARGRFKVYLIDEVHMLSR---------------HSFNA 145 (250)
T ss_dssp HHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCS-CSSSSSEEEEEETGGGSCH---------------HHHHH
T ss_pred HHhccCCcceEEecCcc------cccHHHHHHHHHHhhhc-hhcCCceEEEEECcccccH---------------HHHHH
Confidence 0112222211 01112222222221100 0113468999999998643 34567
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFS 381 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 381 (459)
++..++. ...++++|+++|.+..+++.+.+|+ ..+.+++++.++..++++..+... +. .
T Consensus 146 l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~---~~----------~----- 204 (250)
T 1njg_A 146 LLKTLEE--PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEE---HI----------A----- 204 (250)
T ss_dssp HHHHHHS--CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHT---TC----------C-----
T ss_pred HHHHHhc--CCCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhc---CC----------C-----
Confidence 7777765 2456778888888888999999996 788999999999999998887652 10 0
Q ss_pred HHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCCCHHHHHHHH
Q 012655 382 ILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLTV 446 (459)
Q Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~~Al 446 (459)
+. ...+..+++.|.| +.|.+..++..+.+. ....+|.+++.+++
T Consensus 205 ----------~~--------~~~~~~l~~~~~G-~~~~~~~~~~~~~~~--~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 205 ----------HE--------PRALQLLARAAEG-SLRDALSLTDQAIAS--GDGQVSTQAVSAML 248 (250)
T ss_dssp ----------BC--------HHHHHHHHHHHTT-CHHHHHHHHHHHHTT--TTSSBCHHHHHHHS
T ss_pred ----------CC--------HHHHHHHHHHcCC-CHHHHHHHHHHHHhc--cCceecHHHHHHHh
Confidence 00 1136678888888 888888888776433 33489999988775
No 51
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.63 E-value=1.3e-15 Score=143.10 Aligned_cols=183 Identities=13% Similarity=0.067 Sum_probs=124.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
+..++|+||||||||++++++++.+... +..++.+++.++....... + .....+.+++|
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~--------~-------~~~~~~~vlii 110 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL------ERRSFYIPLGIHASISTAL--------L-------EGLEQFDLICI 110 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEEGGGGGGSCGGG--------G-------TTGGGSSEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEEHHHHHHHHHHH--------H-------HhccCCCEEEE
Confidence 4679999999999999999999998643 2344677776654332110 0 01135689999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCE-EEEEecCCCC---cccHHHhccCC--eEEEeCCCCHH
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV-IILTTSNITA---AIDIAFVDRAD--IKAYVGPPTLQ 347 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~v-iIi~Ttn~~~---~ld~al~~R~~--~~i~~~~P~~~ 347 (459)
||++.+.... ...+.++..++.....+.+ +|++++..+. .+++.+.+||. ..+.+++|+.+
T Consensus 111 De~~~~~~~~-------------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~ 177 (242)
T 3bos_A 111 DDVDAVAGHP-------------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDD 177 (242)
T ss_dssp ETGGGGTTCH-------------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGG
T ss_pred eccccccCCH-------------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHH
Confidence 9999875421 2245566666655444554 6666655554 34688899985 89999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH
Q 012655 348 ARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA 427 (459)
Q Consensus 348 ~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a 427 (459)
++.+++...+... +. . +. ...+..+++.+.| +.|.+..++..+
T Consensus 178 ~~~~~l~~~~~~~---~~----------~---------------~~--------~~~~~~l~~~~~g-~~r~l~~~l~~~ 220 (242)
T 3bos_A 178 EKLAALQRRAAMR---GL----------Q---------------LP--------EDVGRFLLNRMAR-DLRTLFDVLDRL 220 (242)
T ss_dssp GHHHHHHHHHHHT---TC----------C---------------CC--------HHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CC----------C---------------CC--------HHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 9999999888742 11 0 00 1135677788877 888888887777
Q ss_pred HHhh-cCCCCCCHHHHHHHHH
Q 012655 428 HAAL-ANPNGCDPSKFLLTVI 447 (459)
Q Consensus 428 ~a~~-~~~~~it~~d~~~Al~ 447 (459)
.... .....+|.+++.+++.
T Consensus 221 ~~~a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 221 DKASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHTCCCCHHHHHHHHT
T ss_pred HHHHHHhCCCCcHHHHHHHhh
Confidence 3332 3346799999988764
No 52
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.62 E-value=2.6e-15 Score=151.81 Aligned_cols=188 Identities=19% Similarity=0.228 Sum_probs=112.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCC--------CC--------ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGV--------NP--------FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~--------~~--------~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+.+.++|++.+|+.+...+.......+.|. +| .....+.+++|+||||||||++|+++|+.++
T Consensus 18 ~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 18 VLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455689999999999887743222221111 00 0001135699999999999999999999997
Q ss_pred ccccCCCCcceEEEEcccccc-ccccchh-hHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHH
Q 012655 220 IRFSSRYPQCQLVEVNAHSLF-SKWFSES-GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIR 297 (459)
Q Consensus 220 ~~~~~~~~~~~~i~i~~~~l~-~~~~~e~-~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~ 297 (459)
.++ +.+++..+. ..+++.. ...+..++......+. ...++++||||++.+...+.....+.+. ....
T Consensus 98 ~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEi~~l~~~~~~~~~~~~~-~~~~ 166 (376)
T 1um8_A 98 IPI---------AISDATSLTEAGYVGEDVENILTRLLQASDWNVQ-KAQKGIVFIDEIDKISRLSENRSITRDV-SGEG 166 (376)
T ss_dssp CCE---------EEEEGGGCC--------CTHHHHHHHHHTTTCHH-HHTTSEEEEETGGGC---------------CHH
T ss_pred CCE---------EEecchhhhhcCcCCccHHHHHHHHHhhccchhh-hcCCeEEEEcCHHHHhhhcCCCceeccc-chHH
Confidence 655 778887765 3444443 3334444443221111 1256899999999998764332222221 1234
Q ss_pred HHHHHHHHHHhhc-------------------CCCCEEEEEecCC-----------------------------------
Q 012655 298 VVNALLTQMDKLK-------------------SSPNVIILTTSNI----------------------------------- 323 (459)
Q Consensus 298 ~~~~ll~~l~~l~-------------------~~~~viIi~Ttn~----------------------------------- 323 (459)
+++.|+..|++.. ...++++|+|+|.
T Consensus 167 ~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~ 246 (376)
T 1um8_A 167 VQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLV 246 (376)
T ss_dssp HHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGC
T ss_pred HHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhc
Confidence 7888999988531 1245566666652
Q ss_pred ------CCcccHHHhccCCeEEEeCCCCHHHHHHHHH
Q 012655 324 ------TAAIDIAFVDRADIKAYVGPPTLQARYEILR 354 (459)
Q Consensus 324 ------~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~ 354 (459)
...+.+.|.+|++.++.+++++.++..+|+.
T Consensus 247 ~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 247 QTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp CHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred CHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHh
Confidence 1125688899999999999999999999987
No 53
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=1.8e-15 Score=159.46 Aligned_cols=227 Identities=17% Similarity=0.174 Sum_probs=135.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccc---cCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEE
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLV---SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i---~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (459)
.|++++|.+..++.+.+++.........|...... ...+.++|+||||||||++|+++|+.++.++ ++
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~---------i~ 107 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI---------LE 107 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE---------EE
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE---------EE
Confidence 48899999999999999887644333222221111 1247899999999999999999999997554 88
Q ss_pred EccccccccccchhhH-------HHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHH
Q 012655 234 VNAHSLFSKWFSESGK-------LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (459)
Q Consensus 234 i~~~~l~~~~~~e~~~-------~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (459)
+++.++.......... .+..+|..+.........+.+|+|||+|.+.... ...++.++..+
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~------------~~~l~~L~~~l 175 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD------------RGGVGQLAQFC 175 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS------------TTHHHHHHHHH
T ss_pred EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh------------HHHHHHHHHHH
Confidence 9988765433211100 0112222221111112467899999999886421 12345566665
Q ss_pred HhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhc
Q 012655 307 DKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (459)
Q Consensus 307 ~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 386 (459)
+. ....+++++++.....+. .+.+| ...+.+++|+.+++.+++...+... +. .
T Consensus 176 ~~--~~~~iIli~~~~~~~~l~-~l~~r-~~~i~f~~~~~~~~~~~L~~i~~~~---~~----~---------------- 228 (516)
T 1sxj_A 176 RK--TSTPLILICNERNLPKMR-PFDRV-CLDIQFRRPDANSIKSRLMTIAIRE---KF----K---------------- 228 (516)
T ss_dssp HH--CSSCEEEEESCTTSSTTG-GGTTT-SEEEECCCCCHHHHHHHHHHHHHHH---TC----C----------------
T ss_pred Hh--cCCCEEEEEcCCCCccch-hhHhc-eEEEEeCCCCHHHHHHHHHHHHHHc---CC----C----------------
Confidence 54 223455555444334443 34444 5789999999999999998776642 11 0
Q ss_pred CCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHHHHhhcCCCCCCHHHHHHHHHH
Q 012655 387 LSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLAHAALANPNGCDPSKFLLTVID 448 (459)
Q Consensus 387 ~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a~a~~~~~~~it~~d~~~Al~~ 448 (459)
+. ...+..|++.+.| +++.+.............++.+++..++..
T Consensus 229 -----i~--------~~~l~~la~~s~G----diR~~i~~L~~~~~~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 229 -----LD--------PNVIDRLIQTTRG----DIRQVINLLSTISTTTKTINHENINEISKA 273 (516)
T ss_dssp -----CC--------TTHHHHHHHHTTT----CHHHHHHHHTHHHHHSSCCCTTHHHHHHHH
T ss_pred -----CC--------HHHHHHHHHHcCC----cHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Confidence 00 0125567777765 444444444333335566777777766653
No 54
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.61 E-value=3.7e-14 Score=141.22 Aligned_cols=209 Identities=19% Similarity=0.226 Sum_probs=136.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
|+.+++.+.+++.+...+..... .|-. ...++|+||||+|||||++++|+.++.++ ...++.
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~---~~~~------~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~---------~~~sg~ 85 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKM---RGEV------LDHVLLAGPPGLGKTTLAHIIASELQTNI---------HVTSGP 85 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH---HTCC------CCCEEEESSTTSSHHHHHHHHHHHHTCCE---------EEEETT
T ss_pred HHHccCcHHHHHHHHHHHHHHHh---cCCC------CCeEEEECCCCCcHHHHHHHHHHHhCCCE---------EEEech
Confidence 66778887777777665543211 1211 24599999999999999999999996543 333332
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc-------
Q 012655 238 SLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK------- 310 (459)
Q Consensus 238 ~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~------- 310 (459)
.+. .+..+..++. ......|++|||++.+... +.+.++..+....
T Consensus 86 ~~~------~~~~l~~~~~-------~~~~~~v~~iDE~~~l~~~---------------~~e~L~~~~~~~~~~i~~~~ 137 (334)
T 1in4_A 86 VLV------KQGDMAAILT-------SLERGDVLFIDEIHRLNKA---------------VEELLYSAIEDFQIDIMIGK 137 (334)
T ss_dssp TCC------SHHHHHHHHH-------HCCTTCEEEEETGGGCCHH---------------HHHHHHHHHHTSCCCC----
T ss_pred Hhc------CHHHHHHHHH-------HccCCCEEEEcchhhcCHH---------------HHHHHHHHHHhcccceeecc
Confidence 221 1222222221 1124579999999987542 2233333332211
Q ss_pred ---------CCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchH
Q 012655 311 ---------SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFS 381 (459)
Q Consensus 311 ---------~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 381 (459)
.-..+.++++++.+..++..+++||+..+.+++++.+++.++++...... +. .
T Consensus 138 ~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~---~~----------~----- 199 (334)
T 1in4_A 138 GPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM---DV----------E----- 199 (334)
T ss_dssp -----------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT---TC----------C-----
T ss_pred CcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc---CC----------C-----
Confidence 01235666788888999999999999999999999999999999877642 11 0
Q ss_pred HHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHH
Q 012655 382 ILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDT 449 (459)
Q Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~ 449 (459)
+. ...+..+|+++.| +.|.+..++..+ .|...+...+|.+++.+|+...
T Consensus 200 ----------~~--------~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 200 ----------IE--------DAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp ----------BC--------HHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred ----------cC--------HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 00 1136788888888 667777777766 4555667789999988888654
No 55
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=1.6e-14 Score=145.02 Aligned_cols=233 Identities=15% Similarity=0.194 Sum_probs=143.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
.++++|.+...+.+.+.+..... +- .+..++|+||+|+|||+|++++++.+...... +..++.+++.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~----~~------~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~---~~~~~~i~~~ 85 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR----EE------KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG---KFKHVYINTR 85 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG----TC------CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS---SCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc----CC------CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC---CceEEEEECC
Confidence 35688888888888776543111 11 14569999999999999999999988432110 2345777765
Q ss_pred cccccc------c-------chhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHH
Q 012655 238 SLFSKW------F-------SESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (459)
Q Consensus 238 ~l~~~~------~-------~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (459)
...... . ...+.....++..+...+.....+.+|+|||++.+..... ...+..++.
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-----------~~~l~~l~~ 154 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-----------DDILYKLSR 154 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-----------STHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-----------CHHHHHHhh
Confidence 432100 0 0001112333444444444334588999999999976320 135666666
Q ss_pred HHHhhcCCCCEEEEEecCCC---CcccHHHhccCC-eEEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccch
Q 012655 305 QMDKLKSSPNVIILTTSNIT---AAIDIAFVDRAD-IKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNF 380 (459)
Q Consensus 305 ~l~~l~~~~~viIi~Ttn~~---~~ld~al~~R~~-~~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~ 380 (459)
.++.+ ...++.+|+++|.. ..++..+.+||. ..+.+++++.++..+++...+........
T Consensus 155 ~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~--------------- 218 (386)
T 2qby_A 155 INSEV-NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGV--------------- 218 (386)
T ss_dssp HHHSC-CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSC---------------
T ss_pred chhhc-CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCC---------------
Confidence 66554 34566666666655 456778888886 58999999999999999988764311000
Q ss_pred HHHhhcCCchhHHhhhhhhHHHHHHHHHHHHcc---CCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 381 SILKEKLSNPDIQEADRSQHFYKQLLEAAEACE---GLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 381 ~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~---G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
+. ...+..+++.+. | +.|.+..++..+ .+...+...++.+++..|+....
T Consensus 219 -----------~~--------~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 219 -----------LP--------DNVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp -----------SC--------HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred -----------CC--------HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 00 012444555554 6 566666677666 33334667899999998887654
No 56
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=3.7e-14 Score=143.03 Aligned_cols=226 Identities=15% Similarity=0.148 Sum_probs=146.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCc--EEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNR--IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~--~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
++++|.+...+.+..++..... |-. +. .++|+||||||||++++++++.+.... +..++.+++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~----~~~------~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-----~~~~~~i~~ 81 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR----NPG------HHYPRATLLGRPGTGKTVTLRKLWELYKDKT-----TARFVYING 81 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH----STT------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-----CCEEEEEET
T ss_pred CCCCChHHHHHHHHHHHHHHHc----CCC------CCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-----CeeEEEEeC
Confidence 5688999888888887765332 111 23 699999999999999999999884210 245578887
Q ss_pred cccccc--ccc-----------hhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHH
Q 012655 237 HSLFSK--WFS-----------ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (459)
Q Consensus 237 ~~l~~~--~~~-----------e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (459)
...... ... ..+.....+++.+...+.....+.+|+|||++.+. ...++.|+
T Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~---------------~~~~~~L~ 146 (389)
T 1fnn_A 82 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA---------------PDILSTFI 146 (389)
T ss_dssp TTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC---------------HHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc---------------hHHHHHHH
Confidence 554321 000 00111233444444444444567899999999872 35567777
Q ss_pred HHHHhhcC--CCCEEEEEecCCC---CcccHHHhccCCe-EEEeCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcc
Q 012655 304 TQMDKLKS--SPNVIILTTSNIT---AAIDIAFVDRADI-KAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSML 377 (459)
Q Consensus 304 ~~l~~l~~--~~~viIi~Ttn~~---~~ld~al~~R~~~-~i~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l 377 (459)
..++.... ..++.+|+++|.+ ..+++.+.+||.. .+.+++++.++..++++..+......+.+
T Consensus 147 ~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~----------- 215 (389)
T 1fnn_A 147 RLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY----------- 215 (389)
T ss_dssp HHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS-----------
T ss_pred HHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC-----------
Confidence 77665432 1466777777766 5578888899875 89999999999999999888753111100
Q ss_pred cchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHc---------cCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHH
Q 012655 378 PNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEAC---------EGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTV 446 (459)
Q Consensus 378 ~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~---------~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al 446 (459)
. ...+..+++.+ .| ..|.+..++..| .+...+...++.+++..|+
T Consensus 216 ---------------~--------~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~ 271 (389)
T 1fnn_A 216 ---------------S--------EDILQMIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSS 271 (389)
T ss_dssp ---------------C--------HHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred ---------------C--------HHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 0 11356677777 34 556666666666 3333466778888888877
Q ss_pred HHH
Q 012655 447 IDT 449 (459)
Q Consensus 447 ~~~ 449 (459)
...
T Consensus 272 ~~~ 274 (389)
T 1fnn_A 272 KEV 274 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.58 E-value=3e-16 Score=141.52 Aligned_cols=167 Identities=20% Similarity=0.299 Sum_probs=106.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc-CCCCcceEEEEc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQCQLVEVN 235 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~~~i~i~ 235 (459)
.|++++|.++..+.+.+.+.. + .+..++|+||+|||||++++++++.+..... .......++.++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------~-------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR-------R-------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------S-------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred cccccccchHHHHHHHHHHhc-------C-------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 477888888887777776532 1 1467999999999999999999998743110 001234567777
Q ss_pred ccccc--ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCC
Q 012655 236 AHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (459)
Q Consensus 236 ~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~ 313 (459)
+..+. ..+.+.....+..++..+.. ...+.+++|||++.+...+.. ..... +.+.+...+ ..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDe~~~l~~~~~~----~~~~~---~~~~l~~~~----~~~ 150 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAK----QEGNVILFIDELHTMVGAGKA----DGAMD---AGNMLKPAL----ARG 150 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHH----STTTEEEEEETGGGGTT----------CCC---CHHHHHHHH----HTT
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhh----cCCCeEEEEeCHHHHhccCcc----cchHH---HHHHHHHhh----ccC
Confidence 76654 22333333444455544332 245679999999998754321 01111 222233332 234
Q ss_pred CEEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHH
Q 012655 314 NVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEIL 353 (459)
Q Consensus 314 ~viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il 353 (459)
++.+|+++|.+. .+++++.+||+ .+.+++|+.+++.+|+
T Consensus 151 ~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 151 ELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred CeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 566777777665 67999999997 6899999999998875
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.57 E-value=2.2e-14 Score=157.97 Aligned_cols=170 Identities=22% Similarity=0.293 Sum_probs=121.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCC-cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEE
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWN-RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~-~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (459)
.+.+.++|++..++.+...+... ..|.... ..+ ..+||+||||||||++|+++|+.+. ..+..++.+
T Consensus 488 ~l~~~viGq~~a~~~l~~~i~~~----~~~~~~~--~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~------~~~~~~i~i 555 (758)
T 3pxi_A 488 ILHSRVIGQDEAVVAVAKAVRRA----RAGLKDP--KRPIGSFIFLGPTGVGKTELARALAESIF------GDEESMIRI 555 (758)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHH----TTTCSCT--TSCSEEEEEESCTTSSHHHHHHHHHHHHH------SCTTCEEEE
T ss_pred HHhCcCcChHHHHHHHHHHHHHH----HcccCCC--CCCceEEEEECCCCCCHHHHHHHHHHHhc------CCCcceEEE
Confidence 34567888998888888776542 2232210 011 2699999999999999999999983 223456999
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc----
Q 012655 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK---- 310 (459)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~---- 310 (459)
++..+...+....+ .++..++. ..+++|||||++.+. ..+++.|+..|+.-.
T Consensus 556 ~~s~~~~~~~~~~~----~l~~~~~~-----~~~~vl~lDEi~~~~---------------~~~~~~Ll~~le~g~~~~~ 611 (758)
T 3pxi_A 556 DMSEYMEKHSTSGG----QLTEKVRR-----KPYSVVLLDAIEKAH---------------PDVFNILLQVLEDGRLTDS 611 (758)
T ss_dssp EGGGGCSSCCCC-------CHHHHHH-----CSSSEEEEECGGGSC---------------HHHHHHHHHHHHHSBCC--
T ss_pred echhcccccccccc----hhhHHHHh-----CCCeEEEEeCccccC---------------HHHHHHHHHHhccCeEEcC
Confidence 99988766554411 12222222 356899999998764 367888888888632
Q ss_pred -----CCCCEEEEEecCCCCc------------ccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHH
Q 012655 311 -----SSPNVIILTTSNITAA------------IDIAFVDRADIKAYVGPPTLQARYEILRSCLQELI 361 (459)
Q Consensus 311 -----~~~~viIi~Ttn~~~~------------ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~ 361 (459)
...+++||+|||.+.. +.+.|++||+.++.+++|+.+++.+|++.++..+.
T Consensus 612 ~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~ 679 (758)
T 3pxi_A 612 KGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLT 679 (758)
T ss_dssp ---CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHH
T ss_pred CCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHH
Confidence 2356789999996543 78899999999999999999999999999988763
No 59
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=2.8e-14 Score=142.13 Aligned_cols=162 Identities=19% Similarity=0.163 Sum_probs=108.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+++++.+...+.. |- ..+++|+||||||||++++++++.+..+- .....++.+++
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~-------~~-------~~~~ll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~ 97 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKS-------AN-------LPHMLFYGPPGTGKTSTILALTKELYGPD---LMKSRILELNA 97 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTC-------TT-------CCCEEEECSTTSSHHHHHHHHHHHHHHHH---HHTTSEEEECS
T ss_pred CHHHhhCCHHHHHHHHHHHhc-------CC-------CCEEEEECCCCCCHHHHHHHHHHHhCCCc---ccccceEEEcc
Confidence 488899999999888776532 11 12399999999999999999999985321 01123467776
Q ss_pred ccccccccchhhHHHHHHHHHHHHH-----------HHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEM-----------VEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~-----------~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (459)
.+... ...+...+...... ......+.+++|||++.+.. ...+.|+..
T Consensus 98 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~---------------~~~~~Ll~~ 156 (353)
T 1sxj_D 98 SDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---------------DAQSALRRT 156 (353)
T ss_dssp SSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH---------------HHHHHHHHH
T ss_pred ccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH---------------HHHHHHHHH
Confidence 55321 11111111111110 00112446999999998754 345677777
Q ss_pred HHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 306 MDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 306 l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
++... .+..+|.++|.+..+++++.+|+. .+.+++|+.++..+++...+..
T Consensus 157 le~~~--~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~ 207 (353)
T 1sxj_D 157 METYS--GVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQ 207 (353)
T ss_dssp HHHTT--TTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred HHhcC--CCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 77643 345556677888889999999995 7889999999999998887654
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.54 E-value=5.9e-14 Score=154.52 Aligned_cols=169 Identities=20% Similarity=0.233 Sum_probs=117.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
.+.++|++..++.+...+.. ...|..... .+...+||+||||||||++|+++++.++.++ +.+++.
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~----~~~g~~~~~-~p~~~~ll~G~~GtGKT~la~~la~~l~~~~---------~~i~~s 522 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKM----ARAGLGHEH-KPVGSFLFAGPTGVGKTEVTVQLSKALGIEL---------LRFDMS 522 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHH----HHTTCSCTT-SCSEEEEEECSTTSSHHHHHHHHHHHHTCEE---------EEEEGG
T ss_pred HhhccCHHHHHHHHHHHHHH----HhcccCCCC-CCceEEEEECCCCCcHHHHHHHHHHHhcCCE---------EEEech
Confidence 44577777777777665542 334443110 0123699999999999999999999996554 788887
Q ss_pred ccccc-----ccch----hhHH-HHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHH
Q 012655 238 SLFSK-----WFSE----SGKL-VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (459)
Q Consensus 238 ~l~~~-----~~~e----~~~~-v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~ 307 (459)
.+... .++. .+.. ...+...++. ...++|||||++.+. ..+++.|+..|+
T Consensus 523 ~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-----~~~~vl~lDEi~~~~---------------~~~~~~Ll~~le 582 (758)
T 1r6b_X 523 EYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-----HPHAVLLLDEIEKAH---------------PDVFNILLQVMD 582 (758)
T ss_dssp GCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH-----CSSEEEEEETGGGSC---------------HHHHHHHHHHHH
T ss_pred hhcchhhHhhhcCCCCCCcCccccchHHHHHHh-----CCCcEEEEeCccccC---------------HHHHHHHHHHhc
Confidence 76532 1111 1110 1112222222 356899999999764 367888888888
Q ss_pred hhc---------CCCCEEEEEecCCCC-------------------------cccHHHhccCCeEEEeCCCCHHHHHHHH
Q 012655 308 KLK---------SSPNVIILTTSNITA-------------------------AIDIAFVDRADIKAYVGPPTLQARYEIL 353 (459)
Q Consensus 308 ~l~---------~~~~viIi~Ttn~~~-------------------------~ld~al~~R~~~~i~~~~P~~~~r~~Il 353 (459)
.-. ...+++||+|+|... .++++|++||+.++.+++|+.+++..|+
T Consensus 583 ~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~ 662 (758)
T 1r6b_X 583 NGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV 662 (758)
T ss_dssp HSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred CcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHH
Confidence 521 125688999999754 5788999999999999999999999999
Q ss_pred HHHHHHH
Q 012655 354 RSCLQEL 360 (459)
Q Consensus 354 ~~~l~~~ 360 (459)
+.++.++
T Consensus 663 ~~~l~~~ 669 (758)
T 1r6b_X 663 DKFIVEL 669 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998865
No 61
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=1.5e-15 Score=162.31 Aligned_cols=249 Identities=15% Similarity=0.115 Sum_probs=142.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCC----ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEE
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNP----FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~----~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (459)
+...++|.+.+|+.+...+.. |... ..+..+.++||+||||||||++|+++|+.++........
T Consensus 293 l~~~I~G~e~vk~al~~~l~~-------g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~----- 360 (595)
T 3f9v_A 293 IAPSIYGHWELKEALALALFG-------GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGK----- 360 (595)
T ss_dssp TSSTTSCCHHHHHHHTTTTTC-------CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTT-----
T ss_pred hcchhcChHHHHHHHHHHHhC-------CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCC-----
Confidence 344677888888776443221 1100 111122369999999999999999999998654322100
Q ss_pred EEcccccccc---------ccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHH
Q 012655 233 EVNAHSLFSK---------WFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (459)
Q Consensus 233 ~i~~~~l~~~---------~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (459)
..++..+... +....+. +.. ...++++|||++.+.. ...+.|+
T Consensus 361 ~~~~~~l~~~~~~~~~~g~~~~~~G~-----l~~--------A~~gil~IDEid~l~~---------------~~q~~Ll 412 (595)
T 3f9v_A 361 GSTAAGLTAAVVREKGTGEYYLEAGA-----LVL--------ADGGIAVIDEIDKMRD---------------EDRVAIH 412 (595)
T ss_dssp CSTTTTSEEECSSGGGTSSCSEEECH-----HHH--------HSSSEECCTTTTCCCS---------------HHHHHHH
T ss_pred ccccccccceeeeccccccccccCCe-----eEe--------cCCCcEEeehhhhCCH---------------hHhhhhH
Confidence 0111122111 1111111 111 1457999999997743 4566777
Q ss_pred HHHHhhc-----------CCCCEEEEEecCCCC-------------cccHHHhccCCe-EEEeCCCCHHHHHHHHHHHHH
Q 012655 304 TQMDKLK-----------SSPNVIILTTSNITA-------------AIDIAFVDRADI-KAYVGPPTLQARYEILRSCLQ 358 (459)
Q Consensus 304 ~~l~~l~-----------~~~~viIi~Ttn~~~-------------~ld~al~~R~~~-~i~~~~P~~~~r~~Il~~~l~ 358 (459)
..|+.-. .+.++.||+|+|+.. .+++++++|||. .+..+.|+.+ ...|.++.+.
T Consensus 413 ~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 413 EAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp HHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHT
T ss_pred HHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHH
Confidence 7776421 124678999999886 789999999985 4455777777 7777777665
Q ss_pred HHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHH-----------ccCCChHHHhchHHHH
Q 012655 359 ELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEA-----------CEGLSGRSLRKLPFLA 427 (459)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~-----------~~G~Sgr~L~~L~~~a 427 (459)
...... .........+..+...+.....+.+.+.. ...+...... ..+.|.|.+..++.+|
T Consensus 492 ~~~~~~---~~~~l~~~~l~~~i~~ar~~~~p~ls~ea-----~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla 563 (595)
T 3f9v_A 492 VHSGKS---TKNIIDIDTLRKYIAYARKYVTPKITSEA-----KNLITDFFVEMRKKSSETPDSPILITPRQLEALIRIS 563 (595)
T ss_dssp TTCCCS---SSSTTCCTTTHHHHHHHHHHHCCCCCCCT-----HHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHH
T ss_pred Hhhccc---cccCCCHHHHHHHHHHHHHhCCCCCCHHH-----HHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHH
Confidence 431100 00111122233333222211011111100 1112222211 3578999999999988
Q ss_pred --HHhhcCCCCCCHHHHHHHHHHHHHHHh
Q 012655 428 --HAALANPNGCDPSKFLLTVIDTARKER 454 (459)
Q Consensus 428 --~a~~~~~~~it~~d~~~Al~~~~~~~~ 454 (459)
+|...++..++.+|+.+|+.-.....+
T Consensus 564 ~a~A~l~~~~~V~~~dv~~Ai~l~~~sl~ 592 (595)
T 3f9v_A 564 EAYAKMALKAEVTREDAERAINIMRLFLE 592 (595)
T ss_dssp HHHHHTTSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCHHHHHHHHHHHHHHHH
Confidence 666778899999999999976655443
No 62
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.53 E-value=6.5e-15 Score=153.71 Aligned_cols=235 Identities=17% Similarity=0.181 Sum_probs=127.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
-..++|.+++++.+...+.. +.++||+||||||||++|+++|+.++. ...+..+++.
T Consensus 21 ~~~ivGq~~~i~~l~~al~~----------------~~~VLL~GpPGtGKT~LAraLa~~l~~-------~~~f~~~~~~ 77 (500)
T 3nbx_X 21 EKGLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQN-------ARAFEYLMTR 77 (500)
T ss_dssp HTTCSSCHHHHHHHHHHHHH----------------TCEEEEECCSSSSHHHHHHHGGGGBSS-------CCEEEEECCT
T ss_pred HhhhHHHHHHHHHHHHHHhc----------------CCeeEeecCchHHHHHHHHHHHHHHhh-------hhHHHHHHHh
Confidence 34577888888777665443 456999999999999999999998742 1122333332
Q ss_pred -----cccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--
Q 012655 238 -----SLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-- 310 (459)
Q Consensus 238 -----~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~-- 310 (459)
++++.+....... ...|..+... ....++++|||||+.+. ..+.+.|+..|+.-.
T Consensus 78 ~~t~~dL~G~~~~~~~~~-~g~~~~~~~g--~l~~~~IL~IDEI~r~~---------------~~~q~~LL~~lee~~v~ 139 (500)
T 3nbx_X 78 FSTPEEVFGPLSIQALKD-EGRYERLTSG--YLPEAEIVFLDEIWKAG---------------PAILNTLLTAINERQFR 139 (500)
T ss_dssp TCCHHHHHCCBC-----------CBCCTT--SGGGCSEEEEESGGGCC---------------HHHHHHHHHHHHSSEEE
T ss_pred cCCHHHhcCcccHHHHhh-chhHHhhhcc--CCCcceeeeHHhHhhhc---------------HHHHHHHHHHHHHHhcc
Confidence 2222111111000 0111100000 00135689999997543 366788888886321
Q ss_pred ------CCCCEEEEEecCC-CC--cccHHHhccCCeEEEeCCCCH-HHHHHHHHHHHHHHHHhccccCCccccCCcccch
Q 012655 311 ------SSPNVIILTTSNI-TA--AIDIAFVDRADIKAYVGPPTL-QARYEILRSCLQELIRTGIISNFQDCDQSMLPNF 380 (459)
Q Consensus 311 ------~~~~viIi~Ttn~-~~--~ld~al~~R~~~~i~~~~P~~-~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~ 380 (459)
..+..++|++||. ++ .+.+++++||...+.+++|+. +++.+|++....... .............+
T Consensus 140 i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~-----~~~~~~~~~~~e~l 214 (500)
T 3nbx_X 140 NGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDEND-----NPVPDALQVTDEEY 214 (500)
T ss_dssp CSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTS-----CCSCTTTSBCHHHH
T ss_pred CCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCC-----CCCCccceecHHHH
Confidence 1122244555564 33 245699999999999999997 677888775432110 00000111112222
Q ss_pred HHHhhcCCchhHHhhhhhhHHHHHHHHHHH------HccCCChHHHhchHHHH--HHhhcCCCCCCHHHHH
Q 012655 381 SILKEKLSNPDIQEADRSQHFYKQLLEAAE------ACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFL 443 (459)
Q Consensus 381 ~~~~~~~~~~~i~~~~~~~~~~~~L~~la~------~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~ 443 (459)
..+........+.+. ....+..+.. ...|+|.|.+..++..| +|...++..++.+|+.
T Consensus 215 ~~~~~~~~~v~v~d~-----v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 215 ERWQKEIGEITLPDH-----VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHTTCBCCHH-----HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHhcCCcccCchH-----HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 222211111111111 1112333332 13588999999998887 6667788888888876
No 63
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=1.5e-13 Score=135.22 Aligned_cols=158 Identities=23% Similarity=0.316 Sum_probs=109.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+.+++.+..++.. |- ..+++|+||||+|||++++++++.+.... ....++.+++
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~-------~~-------~~~~ll~G~~G~GKT~la~~l~~~l~~~~----~~~~~~~~~~ 84 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKT-------GS-------MPHLLFAGPPGVGKTTAALALARELFGEN----WRHNFLELNA 84 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHH-------TC-------CCEEEEESCTTSSHHHHHHHHHHHHHGGG----HHHHEEEEET
T ss_pred CHHHhhCCHHHHHHHHHHHHc-------CC-------CCeEEEECcCCCCHHHHHHHHHHHhcCCc----ccCceEEeec
Confidence 478899999999988877653 11 12499999999999999999999874221 1123466666
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHh----cccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEE----ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~----~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+..+ ...+.......... ...+.+++|||++.+.. ...+.|+..++. ..
T Consensus 85 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~--~~ 138 (327)
T 1iqp_A 85 SDERG---------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------DAQQALRRTMEM--FS 138 (327)
T ss_dssp TCHHH---------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------------HHHHHHHHHHHH--TT
T ss_pred cccCc---------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---------------HHHHHHHHHHHh--cC
Confidence 54311 11111111111111 13568999999998754 345677777776 34
Q ss_pred CCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 313 PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
.++.+|.++|.+..+.+++.+|+. .+.+++++.++..++++..+..
T Consensus 139 ~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~ 184 (327)
T 1iqp_A 139 SNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAEN 184 (327)
T ss_dssp TTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHh
Confidence 567777788888889999999985 7899999999999888877664
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.50 E-value=2.1e-14 Score=149.37 Aligned_cols=159 Identities=19% Similarity=0.295 Sum_probs=104.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc-CCCCcceEEEE
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQCQLVEV 234 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~~~i~i 234 (459)
+.++.++|.+...+.+...+.. .. ..++||+||||||||++++++|+.+..... ....+..++.+
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r------~~--------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR------RT--------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC------SS--------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCcHHHHHHHHHHHhc------cC--------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3477899999988888776542 11 346999999999999999999999843210 01124456667
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCC
Q 012655 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (459)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~ 314 (459)
++. ..+.++....+..+|..+.. ..+.++||| . .....+.|+..| ..+.
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~-----~~~~iLfiD------~-------------~~~a~~~L~~~L----~~g~ 291 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQ-----AGNIILFID------A-------------AIDASNILKPSL----ARGE 291 (468)
T ss_dssp -------------CTTHHHHHHHHHT-----CCCCEEEEC------C---------------------CCCT----TSSS
T ss_pred eCC---ccccchHHHHHHHHHHHHHh-----cCCeEEEEe------C-------------chhHHHHHHHhh----cCCC
Confidence 665 44555555566777776654 367899999 0 012233333333 3567
Q ss_pred EEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 315 VIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 315 viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
+.+|++||... .+++++.+||. .+.++.|+.+++.+|++.++...
T Consensus 292 v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~ 341 (468)
T 3pxg_A 292 LQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRY 341 (468)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTS
T ss_pred EEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHH
Confidence 88999999887 57999999996 59999999999999999866553
No 65
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.49 E-value=3.5e-13 Score=135.24 Aligned_cols=165 Identities=21% Similarity=0.282 Sum_probs=110.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCc--------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ-------- 228 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~-------- 228 (459)
.|++++|.+.+.+.+...+.. |-. +..++|+||+|+|||++++++++.+..........
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~-------~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSL-------GRI------HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHH-------TCC------CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred chhhccCcHHHHHHHHHHHHh-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 478899999998888877643 111 24589999999999999999999886432110000
Q ss_pred -------ceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHH
Q 012655 229 -------CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (459)
Q Consensus 229 -------~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (459)
..++.++...- .....++.++..+... .....+.+++|||++.+.. ...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~-~~~~~~~vliiDe~~~l~~---------------~~~~~ 138 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYA-PARGRFKVYLIDEVHMLSR---------------HSFNA 138 (373)
T ss_dssp HHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSC-CSSSSSEEEEEECGGGSCH---------------HHHHH
T ss_pred HHhccCCCceEEeccccc------CCHHHHHHHHHHHhhc-cccCCeEEEEEECcchhcH---------------HHHHH
Confidence 01233333210 0111233333332210 0113467999999998743 34677
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 302 ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
|+..++. ...++++|.+++.+..+.+.+.+|+ ..+.+++|+.++..++++..+.+
T Consensus 139 Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 139 LLKTLEE--PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp HHHHHHS--CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 8888776 3456777777777888899999998 88899999999999999988775
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.48 E-value=7.2e-14 Score=153.83 Aligned_cols=175 Identities=18% Similarity=0.305 Sum_probs=119.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc-CCCCcceEEEE
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQCQLVEV 234 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~~~i~i 234 (459)
+.|+.++|.++..+++.+.+.. . .+.+++|+||||||||++++++++.+..... ....++.++.+
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~------~--------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR------R--------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS------S--------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred CCCCCccCCHHHHHHHHHHHhc------c--------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 4578899998888887776532 1 1466999999999999999999998842110 01124556777
Q ss_pred cccccc--ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 235 NAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 235 ~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
+...+. .++.++....+..+|..+.. ..+++|||||++.+...+. ......... ..+..+...
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~-----~~~~iL~IDEi~~l~~~~~------~~~~~~~~~----~~L~~~l~~ 313 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQ-----DTNSILFIDEIHTIIGAGA------ASGGQVDAA----NLIKPLLSS 313 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSS-----SSCEEEEETTTTTTTTSCC------SSSCHHHHH----HHHSSCSSS
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHh-----cCCeEEEEechHHHhhcCC------CCcchHHHH----HHHHHHHhC
Confidence 766665 34556666677777766543 3568999999999876431 111223333 333344455
Q ss_pred CCEEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 313 PNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 313 ~~viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
+.+.+|+++|.++ .+|+++.+||+ .+.++.|+.+++.+|++.....+
T Consensus 314 ~~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~ 365 (758)
T 1r6b_X 314 GKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKY 365 (758)
T ss_dssp CCCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHH
Confidence 7778888888653 35888999997 68999999999999999887764
No 67
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=2.9e-13 Score=132.86 Aligned_cols=161 Identities=19% Similarity=0.165 Sum_probs=110.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+..++.+...+.. +-. .+++|+||+|+|||++++++++.+.... ....++++++
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~-------~~~-------~~~ll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~ 80 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKD-------GNM-------PHMIISGMPGIGKTTSVHCLAHELLGRS----YADGVLELNA 80 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHS-------CCC-------CCEEEECSTTSSHHHHHHHHHHHHHGGG----HHHHEEEECT
T ss_pred CHHHHHCCHHHHHHHHHHHHc-------CCC-------CeEEEECcCCCCHHHHHHHHHHHhcCCc----ccCCEEEecC
Confidence 478899999999888877642 211 2299999999999999999999873211 1123467776
Q ss_pred ccccccccchhhHHHHHHHHHHHHHH-Hh-cccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCC
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMV-EE-ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~-~~-~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~ 314 (459)
.+..+ ...++.++..+.... .. ...+.+++|||++.+.. ...+.|+..++. ...+
T Consensus 81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~--~~~~ 137 (323)
T 1sxj_B 81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------GAQQALRRTMEL--YSNS 137 (323)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------HHHHTTHHHHHH--TTTT
T ss_pred ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------HHHHHHHHHHhc--cCCC
Confidence 54311 122333333222100 00 12368999999998754 235667777765 3356
Q ss_pred EEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 315 VIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 315 viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
+++|.++|.+..+.+++.+|+ ..+.+++|+.++..++++..+..
T Consensus 138 ~~~il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 138 TRFAFACNQSNKIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp EEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEeCChhhchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHH
Confidence 677777788888999999998 48999999999999999888765
No 68
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.5e-13 Score=133.64 Aligned_cols=171 Identities=13% Similarity=0.146 Sum_probs=115.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccC-CCCcceEEEEccccc
Q 012655 161 LIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS-RYPQCQLVEVNAHSL 239 (459)
Q Consensus 161 li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~-~~~~~~~i~i~~~~l 239 (459)
|.+.++-.+.+..++...+.-. .+.+++|+||||||||++++.+++++...... ..+...++++||..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~----------~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSS----------QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----------CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHHHHHHHHHhcCC----------CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 6666666666766665543211 15679999999999999999999999532211 123456789999776
Q ss_pred cccc----------c------chhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHH
Q 012655 240 FSKW----------F------SESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (459)
Q Consensus 240 ~~~~----------~------~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (459)
.+.+ . +.....+..+|.... .....+.+++|||+|.+.. .+++..++
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~---~~~~~~~ii~lDE~d~l~~--------------q~~L~~l~ 154 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVP---KAKKRKTLILIQNPENLLS--------------EKILQYFE 154 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC---GGGSCEEEEEEECCSSSCC--------------THHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh---hccCCceEEEEecHHHhhc--------------chHHHHHH
Confidence 4321 0 112233444444321 1124678999999999861 24555565
Q ss_pred HHHHhhcCCCCEEEEEecCCCCcc----cHHHhccCC-eEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 304 TQMDKLKSSPNVIILTTSNITAAI----DIAFVDRAD-IKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 304 ~~l~~l~~~~~viIi~Ttn~~~~l----d~al~~R~~-~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
.+.. ....+++||+++|..+.. ++++.+|++ ..+.|++++.++..+|++..+...
T Consensus 155 ~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 155 KWIS--SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp HHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred hccc--ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 5432 255788999999887653 445678997 688999999999999999999875
No 69
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.48 E-value=4.4e-14 Score=138.51 Aligned_cols=161 Identities=21% Similarity=0.224 Sum_probs=107.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+.+++.+...+.. +- ..+++|+||+|||||++++++++.+... .....++.+++
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~-------~~-------~~~~ll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~ 76 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVER-------KN-------IPHLLFSGPPGTGKTATAIALARDLFGE----NWRDNFIEMNA 76 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTT-------TC-------CCCEEEESSSSSSHHHHHHHHHHHHHTT----CHHHHCEEEET
T ss_pred CHHHHhCCHHHHHHHHHHHhC-------CC-------CCeEEEECcCCcCHHHHHHHHHHHhcCC----cccCCeEEEeC
Confidence 478899999998888776542 21 1239999999999999999999987311 01123477777
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHH-hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCE
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVE-EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV 315 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~-~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~v 315 (459)
.+..+. ......+.. ...... ....+.+++|||+|.+.. ...+.|+..++. ...++
T Consensus 77 ~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~--~~~~~ 133 (319)
T 2chq_A 77 SDERGI--DVVRHKIKE----FARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEM--YSKSC 133 (319)
T ss_dssp TSTTCT--TTSSHHHHH----HHHSCCSSSCCCEEEEEETGGGSCH---------------HHHHTTGGGTSS--SSSSE
T ss_pred ccccCh--HHHHHHHHH----HHhcCCCCCCCceEEEEeCCCcCCH---------------HHHHHHHHHHHh--cCCCC
Confidence 654221 111111111 110000 013468999999998754 234555555543 33567
Q ss_pred EEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 316 IILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 316 iIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
++|.++|.+..+.+++.+|+ ..+.+++|+.+++.+++...+.+
T Consensus 134 ~~i~~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 134 RFILSCNYVSRIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp EEEEEESCGGGSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHT
T ss_pred eEEEEeCChhhcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHH
Confidence 78888898899999999999 48999999999999998887764
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.47 E-value=8.3e-14 Score=155.20 Aligned_cols=175 Identities=22% Similarity=0.331 Sum_probs=108.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhccccc-CCCCcceEEEE
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQCQLVEV 234 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~~~i~i 234 (459)
+.|+.++|.+...+++.+.+.. .. ..+++|+||||||||++++++|+.+..... ....+..++.+
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~------~~--------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR------RT--------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC------SS--------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CCCcccCCcHHHHHHHHHHHhc------CC--------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 4578899998888887776532 11 245899999999999999999999832110 01124567888
Q ss_pred cccccc--ccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 235 NAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 235 ~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
++..+. ..+.++....+..++..+.. ...+++|||||++.+...+.. .....+.+.+...+. .
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~~iL~IDEi~~l~~~~~~-------~g~~~~~~~L~~~l~----~ 297 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQ----SQGEVILFIDELHTVVGAGKA-------EGAVDAGNMLKPALA----R 297 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHT----TCSSEEEEECCC--------------------------HHHHH----T
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHh----cCCCeEEEEecHHHHhccCCc-------cchHHHHHHHHHHHh----C
Confidence 888876 44556666667777776653 235789999999999765422 112234444544443 3
Q ss_pred CCEEEEEecCCCC----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 313 PNVIILTTSNITA----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 313 ~~viIi~Ttn~~~----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
+.+.+|+++|.++ .+++++.+||+. +.+++|+.+++.+|++..+...
T Consensus 298 ~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~ 348 (854)
T 1qvr_A 298 GELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKY 348 (854)
T ss_dssp TCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhh
Confidence 5667777777664 368999999986 8999999999999999887765
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.47 E-value=1.7e-14 Score=129.71 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=100.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccC-CCCcceEEEEc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS-RYPQCQLVEVN 235 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~-~~~~~~~i~i~ 235 (459)
.|++++|.+...+.+.+.+.. + .+.+++|+||+|||||++++++++.+...... ...+..++.++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------~-------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR-------R-------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------S-------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccchhhcchHHHHHHHHHHhC-------C-------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 477888888877777766532 1 14669999999999999999999987431110 01244567777
Q ss_pred cccccc--cccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCC
Q 012655 236 AHSLFS--KWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (459)
Q Consensus 236 ~~~l~~--~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~ 313 (459)
+..+.. .+.+.....+..++..+.. ...+.+++|||++.+...+.. . .....+.+.+...++ .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDe~~~l~~~~~~----~--~~~~~~~~~l~~~~~----~~ 151 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQD----AEGQVVMFIDEIHTVVGAGAV----A--EGALDAGNILKPMLA----RG 151 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHH----TTTSEEEEETTGGGGSSSSSS----C--TTSCCTHHHHHHHHH----TT
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHh----cCCceEEEEeCHHHhcccccc----c--ccchHHHHHHHHHHh----cC
Confidence 665542 1223333344455444433 235679999999998643320 0 111123334444433 35
Q ss_pred CEEEEEecCCCC-----cccHHHhccCCeEEEeCCCC
Q 012655 314 NVIILTTSNITA-----AIDIAFVDRADIKAYVGPPT 345 (459)
Q Consensus 314 ~viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~ 345 (459)
++++|+++|.+. .+++++.+||. .+.+++|+
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 152 ELRCIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp CSCEEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred CeeEEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 677777778665 57999999997 48888885
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.45 E-value=5.7e-13 Score=148.42 Aligned_cols=175 Identities=22% Similarity=0.269 Sum_probs=117.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
.+|+.++|.+...+.+...+... ..|..... .+...+||+||||||||++|+++++.+.. .+..++.++
T Consensus 555 ~l~~~viG~~~a~~~l~~~i~~~----~~g~~~~~-~p~~~vLl~Gp~GtGKT~lA~~la~~~~~------~~~~~i~i~ 623 (854)
T 1qvr_A 555 ELHKRVVGQDEAIRAVADAIRRA----RAGLKDPN-RPIGSFLFLGPTGVGKTELAKTLAATLFD------TEEAMIRID 623 (854)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHH----GGGCSCSS-SCSEEEEEBSCSSSSHHHHHHHHHHHHHS------SGGGEEEEC
T ss_pred HHhcccCCcHHHHHHHHHHHHHH----hcccCCCC-CCceEEEEECCCCCCHHHHHHHHHHHhcC------CCCcEEEEe
Confidence 45788899999888887776542 22221100 00246999999999999999999999831 123458888
Q ss_pred cccccccc-----cchh----hHH-HHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH
Q 012655 236 AHSLFSKW-----FSES----GKL-VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (459)
Q Consensus 236 ~~~l~~~~-----~~e~----~~~-v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (459)
+..+.... ++.. +.. .+.+...+.. ...++|||||++.+. ..+++.|+..
T Consensus 624 ~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-----~~~~vl~lDEi~~l~---------------~~~~~~Ll~~ 683 (854)
T 1qvr_A 624 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-----RPYSVILFDEIEKAH---------------PDVFNILLQI 683 (854)
T ss_dssp TTTCCSSGGGGGC--------------CHHHHHHH-----CSSEEEEESSGGGSC---------------HHHHHHHHHH
T ss_pred chhccchhHHHHHcCCCCCCcCccccchHHHHHHh-----CCCeEEEEecccccC---------------HHHHHHHHHH
Confidence 88765431 1110 100 1122222221 345899999998763 3678889998
Q ss_pred HHhhc---------CCCCEEEEEecCCC--------------------------CcccHHHhccCCeEEEeCCCCHHHHH
Q 012655 306 MDKLK---------SSPNVIILTTSNIT--------------------------AAIDIAFVDRADIKAYVGPPTLQARY 350 (459)
Q Consensus 306 l~~l~---------~~~~viIi~Ttn~~--------------------------~~ld~al~~R~~~~i~~~~P~~~~r~ 350 (459)
|+.-. ...+++||+|||.. ..+.+.|++|++.++.+.+|+.+++.
T Consensus 684 l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~ 763 (854)
T 1qvr_A 684 LDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIR 763 (854)
T ss_dssp HTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHH
T ss_pred hccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHH
Confidence 88532 12478899999972 23578889999999989999999999
Q ss_pred HHHHHHHHHHH
Q 012655 351 EILRSCLQELI 361 (459)
Q Consensus 351 ~Il~~~l~~~~ 361 (459)
.|++.++.++.
T Consensus 764 ~i~~~~l~~~~ 774 (854)
T 1qvr_A 764 QIVEIQLSYLR 774 (854)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.43 E-value=2e-13 Score=150.35 Aligned_cols=158 Identities=20% Similarity=0.286 Sum_probs=105.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccc-cCCCCcceEEEE
Q 012655 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLVEV 234 (459)
Q Consensus 156 ~~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~~i~i 234 (459)
+.++.++|.+...+++...+.. .. ..++||+||||||||++|+++|+.+...- -....++.++.+
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~------~~--------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR------RT--------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC------SS--------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCchHHHHHHHHHHhC------CC--------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 3477899999998888877542 11 35699999999999999999999973211 011234555666
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCC
Q 012655 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (459)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~ 314 (459)
++ ..+|.++....+..+|..+.. ..++++||| . .....+.|+..+ ..+.
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~-----~~~~iLfiD-----~--------------~~~~~~~L~~~l----~~~~ 291 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQ-----AGNIILFID-----A--------------AIDASNILKPSL----ARGE 291 (758)
T ss_dssp -------------CTTHHHHHHHHHT-----CCCCEEEEC-----C----------------------CCCT----TSSS
T ss_pred cc---cccccchHHHHHHHHHHHHHh-----cCCEEEEEc-----C--------------chhHHHHHHHHH----hcCC
Confidence 65 344566666677888887764 467899999 0 012233333333 3567
Q ss_pred EEEEEecCCCC-----cccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 315 VIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 315 viIi~Ttn~~~-----~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
+.+|++||... .+|+++.+|| ..+.++.|+.+++.+|++.....
T Consensus 292 v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 292 LQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTT
T ss_pred EEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHH
Confidence 88899999887 6899999999 66999999999999999976554
No 74
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.42 E-value=6.7e-13 Score=127.35 Aligned_cols=165 Identities=18% Similarity=0.160 Sum_probs=100.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|.+...+.+.+.+.... .. +..++|+||||||||++|+++++.+.. .+..++.+++
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~---~~---------~~~vll~G~~GtGKt~la~~i~~~~~~------~~~~~~~v~~ 65 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA---PL---------DKPVLIIGERGTGKELIASRLHYLSSR------WQGPFISLNC 65 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT---TS---------CSCEEEECCTTSCHHHHHHHHHHTSTT------TTSCEEEEEG
T ss_pred ccccceeCCHHHHHHHHHHHHHh---CC---------CCCEEEECCCCCcHHHHHHHHHHhcCc------cCCCeEEEec
Confidence 57889999888888777665421 11 345999999999999999999998742 2345688998
Q ss_pred ccccccccchhhHHHHHHHH-------HHH----HHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHH
Q 012655 237 HSLFSKWFSESGKLVAKLFQ-------KIQ----EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~-------~~~----~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (459)
..+..... ...+|. ... ..+.. ....+|||||++.+.. ..+..|+..
T Consensus 66 ~~~~~~~~------~~~l~g~~~~~~~g~~~~~~~~l~~-a~~~~l~lDEi~~l~~---------------~~q~~Ll~~ 123 (265)
T 2bjv_A 66 AALNENLL------DSELFGHEAGAFTGAQKRHPGRFER-ADGGTLFLDELATAPM---------------MVQEKLLRV 123 (265)
T ss_dssp GGSCHHHH------HHHHHCCC---------CCCCHHHH-TTTSEEEEESGGGSCH---------------HHHHHHHHH
T ss_pred CCCChhHH------HHHhcCCcccccccccccccchhhh-cCCcEEEEechHhcCH---------------HHHHHHHHH
Confidence 87632211 011111 000 01111 2357999999998754 345667777
Q ss_pred HHhhc---------CCCCEEEEEecCCC-------CcccHHHhccCC-eEEEeCCCCH--HHHHHHHHHHHHHHH
Q 012655 306 MDKLK---------SSPNVIILTTSNIT-------AAIDIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELI 361 (459)
Q Consensus 306 l~~l~---------~~~~viIi~Ttn~~-------~~ld~al~~R~~-~~i~~~~P~~--~~r~~Il~~~l~~~~ 361 (459)
++.-. ...++.+|+|+|.. ..+++.+.+||. ..+.+|+... ++...+++.++.+..
T Consensus 124 l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~ 198 (265)
T 2bjv_A 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMC 198 (265)
T ss_dssp HHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHH
T ss_pred HHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHH
Confidence 76421 12356788888874 236788999995 4566777664 566677777776653
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=2e-12 Score=128.80 Aligned_cols=158 Identities=19% Similarity=0.272 Sum_probs=106.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|++++|++.+++.|...+.. |-- .+++|+|||||||||+++++|+.+.... ....+++++.
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~-------g~~-------~~~ll~Gp~G~GKTtla~~la~~l~~~~----~~~~~~~~~~ 84 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDE-------GKL-------PHLLFYGPPGTGKTSTIVALAREIYGKN----YSNMVLELNA 84 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHT-------TCC-------CCEEEECSSSSSHHHHHHHHHHHHHTTS----HHHHEEEECT
T ss_pred cHHHhcCcHHHHHHHHHHHhc-------CCC-------ceEEEECCCCCCHHHHHHHHHHHHcCCC----ccceEEEEcC
Confidence 377888888888887776542 211 1299999999999999999999974211 1123466666
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHh----cccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCC
Q 012655 237 HSLFSKWFSESGKLVAKLFQKIQEMVEE----ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (459)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~----~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~ 312 (459)
.+..+ ...++.. +..+... .....+++|||+|.+.. ...+.|+..++.. .
T Consensus 85 ~~~~~------~~~ir~~---i~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~~--~ 138 (340)
T 1sxj_C 85 SDDRG------IDVVRNQ---IKDFASTRQIFSKGFKLIILDEADAMTN---------------AAQNALRRVIERY--T 138 (340)
T ss_dssp TSCCS------HHHHHTH---HHHHHHBCCSSSCSCEEEEETTGGGSCH---------------HHHHHHHHHHHHT--T
T ss_pred ccccc------HHHHHHH---HHHHHhhcccCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHhcC--C
Confidence 54211 1122222 2222211 12367999999998754 3457788887763 3
Q ss_pred CCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 313 PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 313 ~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
..+.++.++|.+..+.+++.+|+ ..+.+.+++.++..+++...++.
T Consensus 139 ~~~~~il~~n~~~~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~ 184 (340)
T 1sxj_C 139 KNTRFCVLANYAHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVH 184 (340)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHT
T ss_pred CCeEEEEEecCccccchhHHhhc-eeEeccCCCHHHHHHHHHHHHHH
Confidence 45666677788889999999998 47888999998888888777653
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=1.9e-12 Score=129.24 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=102.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccc-cCCC---------
Q 012655 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRY--------- 226 (459)
Q Consensus 157 ~~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~--------- 226 (459)
.|++++|.+.+.+.+...+. ..|- ..+++|+||+|+||||+++++++.+..+- ....
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~------~~~~-------~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~ 78 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSD------QPRD-------LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 78 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTT------CTTC-------CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred CHHHhcCCHHHHHHHHHHHh------hCCC-------CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc
Confidence 37889999988887766541 1111 12299999999999999999999652211 0000
Q ss_pred ----------CcceEEEEccccccccccchhhHHHHHHHHHHHHHH--------Hh-cccchhhhhhhhHhHHHhhhhcc
Q 012655 227 ----------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMV--------EE-ENNLVFVLIDEVESLAAARKAAL 287 (459)
Q Consensus 227 ----------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~--------~~-~~~~~illIDEid~l~~~r~~~l 287 (459)
+....+.++..... ......++..+..+.... .. ...+.+++|||++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~------ 148 (354)
T 1sxj_E 79 SNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK------ 148 (354)
T ss_dssp -------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH------
T ss_pred ccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH------
Confidence 00112222221110 000012233322221100 00 12567999999987532
Q ss_pred CCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Q 012655 288 SGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (459)
Q Consensus 288 s~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~ 359 (459)
...+.++..++... .+..+|.+||.+..+.+.+.+|+ ..+.+++|+.++..++++..+.+
T Consensus 149 ---------~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 149 ---------DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp ---------HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 45677888887743 34555555666777888999999 88999999999999999988765
No 77
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.35 E-value=1.4e-11 Score=125.05 Aligned_cols=185 Identities=17% Similarity=0.163 Sum_probs=111.3
Q ss_pred hhhhhhhhHHHHHHHHH-HHHHHHHhcCCCCccccCCcEEEE--ecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEc
Q 012655 159 ESLIYESGLKQRLLHYA-ASALMFAEKGVNPFLVSWNRIVLL--HGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~-~~~~~~~~~g~~~~~i~~~~~vLL--~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (459)
+.++|.+...+.|...+ .... .+.. ..+..++| +||+|+|||+|++.+++.+.........+..++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~----~~~~----~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLL----SGAG----LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHH----TSSC----BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHh----cCCC----CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 56788888777777766 4321 1200 01467899 999999999999999998753210001123456777
Q ss_pred ccccccc------cc---ch----hhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHH
Q 012655 236 AHSLFSK------WF---SE----SGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL 302 (459)
Q Consensus 236 ~~~l~~~------~~---~e----~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~l 302 (459)
+...... .. +. .+.....++..+...+.....+.+|+|||++.+...+ ......+..+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~---------~~~~~~l~~l 164 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP---------RIAAEDLYTL 164 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT---------TSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc---------CcchHHHHHH
Confidence 6432110 00 00 0101123344444333333467899999999986421 0123556666
Q ss_pred HHHHHhhcC-C--CCEEEEEecCCCCc---cc---HHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 303 LTQMDKLKS-S--PNVIILTTSNITAA---ID---IAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 303 l~~l~~l~~-~--~~viIi~Ttn~~~~---ld---~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
+..+..... . .++.+|++++.+.. ++ +.+.+|+...+.+++++.++..+++...+...
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~ 231 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELG 231 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc
Confidence 666655431 2 56777777765542 34 56667877779999999999999998877653
No 78
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.34 E-value=3.2e-12 Score=137.07 Aligned_cols=136 Identities=20% Similarity=0.272 Sum_probs=85.2
Q ss_pred cchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc----------------C---CCCEEEEEecCCC--C
Q 012655 267 NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK----------------S---SPNVIILTTSNIT--A 325 (459)
Q Consensus 267 ~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~----------------~---~~~viIi~Ttn~~--~ 325 (459)
.+.++||||++.+.. ...+.|+..|+.-. . ..++.||+++|.. .
T Consensus 201 ~~gvL~LDEi~~l~~---------------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~ 265 (604)
T 3k1j_A 201 HKGVLFIDEIATLSL---------------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD 265 (604)
T ss_dssp TTSEEEETTGGGSCH---------------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHH
T ss_pred CCCEEEEechhhCCH---------------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHh
Confidence 456999999998743 45677777776321 1 1357788888976 6
Q ss_pred cccHHHhccCC---eEEEeCCC---CHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhh
Q 012655 326 AIDIAFVDRAD---IKAYVGPP---TLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQ 399 (459)
Q Consensus 326 ~ld~al~~R~~---~~i~~~~P---~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~ 399 (459)
.++++|++||. ..+.++.. ..+....+++.+.......+... . +.
T Consensus 266 ~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~------------ls------ 316 (604)
T 3k1j_A 266 KMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIP-----------H------------FT------ 316 (604)
T ss_dssp HSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSC-----------C------------BB------
T ss_pred hcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcc-----------c------------CC------
Confidence 78999999996 56666542 34455666655444432221110 0 00
Q ss_pred HHHHHHHHHHH---HccCC------ChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHH
Q 012655 400 HFYKQLLEAAE---ACEGL------SGRSLRKLPFLA--HAALANPNGCDPSKFLLTVID 448 (459)
Q Consensus 400 ~~~~~L~~la~---~~~G~------Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~ 448 (459)
...+..+.+ +..|. +.|++..++..| .|...+...++.+|+.+|+..
T Consensus 317 --~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 317 --KEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp --HHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 011233333 22453 689999999888 444567889999999999854
No 79
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.29 E-value=7.6e-12 Score=122.81 Aligned_cols=161 Identities=20% Similarity=0.230 Sum_probs=100.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 160 ~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+++|.....+.+.+.+... ... +..|||+||||||||++|++++..... .+..++.++|..+
T Consensus 3 ~iig~s~~~~~~~~~~~~~---a~~---------~~~vLi~Ge~GtGKt~lAr~i~~~~~~------~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV---APS---------DATVLIHGDSGTGKELVARALHACSAR------SDRPLVTLNCAAL 64 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH---CST---------TSCEEEESCTTSCHHHHHHHHHHHSSC------SSSCCCEEECSSC
T ss_pred CcEECCHHHHHHHHHHHHH---hCC---------CCcEEEECCCCchHHHHHHHHHHhCcc------cCCCeEEEeCCCC
Confidence 4667777666666665432 111 345999999999999999999997632 2334588888776
Q ss_pred cccc-----cchh-----hH--HHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHH
Q 012655 240 FSKW-----FSES-----GK--LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (459)
Q Consensus 240 ~~~~-----~~e~-----~~--~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~ 307 (459)
.... ++.. +. .....|..+ ..++|||||++.+.. ..+..|+..++
T Consensus 65 ~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a--------~~g~L~LDEi~~l~~---------------~~q~~Ll~~l~ 121 (304)
T 1ojl_A 65 NESLLESELFGHEKGAFTGADKRREGRFVEA--------DGGTLFLDEIGDISP---------------LMQVRLLRAIQ 121 (304)
T ss_dssp CHHHHHHHHTCCCSSCCC---CCCCCHHHHH--------TTSEEEEESCTTCCH---------------HHHHHHHHHHH
T ss_pred ChHHHHHHhcCccccccCchhhhhcCHHHhc--------CCCEEEEeccccCCH---------------HHHHHHHHHHh
Confidence 3211 1110 00 001112211 347899999998754 35567777777
Q ss_pred hhc---------CCCCEEEEEecCCC-------CcccHHHhccCC-eEEEeCCCC--HHHHHHHHHHHHHHHH
Q 012655 308 KLK---------SSPNVIILTTSNIT-------AAIDIAFVDRAD-IKAYVGPPT--LQARYEILRSCLQELI 361 (459)
Q Consensus 308 ~l~---------~~~~viIi~Ttn~~-------~~ld~al~~R~~-~~i~~~~P~--~~~r~~Il~~~l~~~~ 361 (459)
... ...++.||++||.. ..+++.+..|+. ..+.+|+.. .++...+++.++.+..
T Consensus 122 ~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~ 194 (304)
T 1ojl_A 122 EREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFA 194 (304)
T ss_dssp SSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHH
T ss_pred cCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHH
Confidence 532 12347788888875 235677888884 456677766 4566678888777653
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.25 E-value=3.7e-12 Score=110.85 Aligned_cols=132 Identities=11% Similarity=0.145 Sum_probs=84.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 160 ~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+++|.+...+.+.+.+... ... +..|+|+||||||||++|+++++... + ++.+++..+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~---~~~---------~~~vll~G~~GtGKt~lA~~i~~~~~-~---------~~~~~~~~~ 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA---AKR---------TSPVFLTGEAGSPFETVARYFHKNGT-P---------WVSPARVEY 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH---HTC---------SSCEEEEEETTCCHHHHHGGGCCTTS-C---------EECCSSTTH
T ss_pred CceeCCHHHHHHHHHHHHH---hCC---------CCcEEEECCCCccHHHHHHHHHHhCC-C---------eEEechhhC
Confidence 4677777777777766532 221 34499999999999999999998765 3 477888775
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEE
Q 012655 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILT 319 (459)
Q Consensus 240 ~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~ 319 (459)
...+ ...++.. ....++||||++.+.. ..+..++..++... ..++.+|+
T Consensus 63 ~~~~-------~~~~~~~--------a~~~~l~lDei~~l~~---------------~~q~~Ll~~l~~~~-~~~~~iI~ 111 (143)
T 3co5_A 63 LIDM-------PMELLQK--------AEGGVLYVGDIAQYSR---------------NIQTGITFIIGKAE-RCRVRVIA 111 (143)
T ss_dssp HHHC-------HHHHHHH--------TTTSEEEEEECTTCCH---------------HHHHHHHHHHHHHT-TTTCEEEE
T ss_pred ChHh-------hhhHHHh--------CCCCeEEEeChHHCCH---------------HHHHHHHHHHHhCC-CCCEEEEE
Confidence 4332 2222322 2347899999998754 34556677766543 34566666
Q ss_pred ecCCC-Cc----ccHHHhccC-CeEEEeCCC
Q 012655 320 TSNIT-AA----IDIAFVDRA-DIKAYVGPP 344 (459)
Q Consensus 320 Ttn~~-~~----ld~al~~R~-~~~i~~~~P 344 (459)
|||.+ .. +++.+..|+ ...+.+|+.
T Consensus 112 ~tn~~~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 112 SCSYAAGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp EEEECTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred ecCCCHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 66643 22 556667775 456777764
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.25 E-value=7.2e-12 Score=109.18 Aligned_cols=135 Identities=15% Similarity=0.078 Sum_probs=82.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 160 ~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+++|.....+.+.+.+... ... +..|+|+||||||||++|+++++.... .+..++ +++..+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~---a~~---------~~~vll~G~~GtGKt~lA~~i~~~~~~------~~~~~v-~~~~~~ 62 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL---SET---------DIAVWLYGAPGTGRMTGARYLHQFGRN------AQGEFV-YRELTP 62 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH---TTC---------CSCEEEESSTTSSHHHHHHHHHHSSTT------TTSCCE-EEECCT
T ss_pred CceeCCHHHHHHHHHHHHH---hCC---------CCCEEEECCCCCCHHHHHHHHHHhCCc------cCCCEE-EECCCC
Confidence 4567666666666655432 222 344999999999999999999987632 223447 888776
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEE
Q 012655 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILT 319 (459)
Q Consensus 240 ~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~ 319 (459)
... ......+..+ ..+++||||+|.+.. ..+..++..|.. ...++.+|+
T Consensus 63 ~~~------~~~~~~~~~a--------~~g~l~ldei~~l~~---------------~~q~~Ll~~l~~--~~~~~~~I~ 111 (145)
T 3n70_A 63 DNA------PQLNDFIALA--------QGGTLVLSHPEHLTR---------------EQQYHLVQLQSQ--EHRPFRLIG 111 (145)
T ss_dssp TTS------SCHHHHHHHH--------TTSCEEEECGGGSCH---------------HHHHHHHHHHHS--SSCSSCEEE
T ss_pred Ccc------hhhhcHHHHc--------CCcEEEEcChHHCCH---------------HHHHHHHHHHhh--cCCCEEEEE
Confidence 543 1112223222 447999999998854 345667777643 234556677
Q ss_pred ecCCCC-------cccHHHhccCC-eEEEeCCC
Q 012655 320 TSNITA-------AIDIAFVDRAD-IKAYVGPP 344 (459)
Q Consensus 320 Ttn~~~-------~ld~al~~R~~-~~i~~~~P 344 (459)
|||.+- .+++.+..|+. ..+.+|+.
T Consensus 112 ~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 112 IGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp EESSCHHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred ECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 777542 34566666653 45666653
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.18 E-value=8.9e-11 Score=116.64 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=93.2
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCC---------------CcceEEEEccccccccccchhhHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY---------------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ 259 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~---------------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~ 259 (459)
..+||+||+|+|||++|+++|+.+........ .+..+..++...- +. ......++.+.+.+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEKLN 101 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHHTT
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHHHh
Confidence 46999999999999999999999854321000 0012333433210 00 011233444444332
Q ss_pred HHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEE
Q 012655 260 EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKA 339 (459)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i 339 (459)
.. .......|++|||+|.+.. ...++|++.++. +..++++|.++|.++.+.+++++|+ ..+
T Consensus 102 ~~-~~~~~~kvviIdead~l~~---------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~SRc-~~~ 162 (334)
T 1a5t_A 102 EH-ARLGGAKVVWVTDAALLTD---------------AAANALLKTLEE--PPAETWFFLATREPERLLATLRSRC-RLH 162 (334)
T ss_dssp SC-CTTSSCEEEEESCGGGBCH---------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHTTS-EEE
T ss_pred hc-cccCCcEEEEECchhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhhcc-eee
Confidence 11 0113468999999998854 456888888876 4456777777788889999999999 678
Q ss_pred EeCCCCHHHHHHHHHHHH
Q 012655 340 YVGPPTLQARYEILRSCL 357 (459)
Q Consensus 340 ~~~~P~~~~r~~Il~~~l 357 (459)
.+++|+.++..++++...
T Consensus 163 ~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp ECCCCCHHHHHHHHHHHC
T ss_pred eCCCCCHHHHHHHHHHhc
Confidence 999999999988887653
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=1.3e-10 Score=113.92 Aligned_cols=134 Identities=10% Similarity=0.125 Sum_probs=92.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (459)
..+||+||||+|||++++++|+.++. .. ..+..++++++.+- ......++.+.+.+.... ......|++||
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~-~~--~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p-~~~~~kvviId 89 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEK-FP--PKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSP-ELYTRKYVIVH 89 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHT-SC--CCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCC-SSSSSEEEEET
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCch-hh--ccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhcc-ccCCceEEEec
Confidence 35999999999999999999986431 00 01234466665420 112234555555543211 11235799999
Q ss_pred hhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeCCCCHHHHHHHHH
Q 012655 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILR 354 (459)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~~P~~~~r~~Il~ 354 (459)
|+|.+.. ...|+|++.|+. +.+++++|.+|+.+..+.+++++| .+.+++|+.++..++++
T Consensus 90 ead~lt~---------------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 90 DCERMTQ---------------QAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp TGGGBCH---------------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCHHHHHHHH
T ss_pred cHHHhCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHHce---eEeCCCCCHHHHHHHHH
Confidence 9998854 457889999886 445666666667788999999999 78889999988888887
Q ss_pred HHH
Q 012655 355 SCL 357 (459)
Q Consensus 355 ~~l 357 (459)
..+
T Consensus 150 ~~~ 152 (305)
T 2gno_A 150 EKI 152 (305)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.12 E-value=3.6e-11 Score=108.33 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=61.2
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHH--HHHHHhcccch
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKI--QEMVEEENNLV 269 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~--~~~~~~~~~~~ 269 (459)
..+++++|+||||||||||++++++.+.... +..++.++..++...+. ..+... .........+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-----g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 102 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-----GIRGYFFDTKDLIFRLK--------HLMDEGKDTKFLKTVLNSP 102 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-----CCCCCEEEHHHHHHHHH--------HHHHHTCCSHHHHHHHTCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-----CCeEEEEEHHHHHHHHH--------HHhcCchHHHHHHHhcCCC
Confidence 3478899999999999999999999884211 11223444444332211 111100 01111113678
Q ss_pred hhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcc
Q 012655 270 FVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI 327 (459)
Q Consensus 270 illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~l 327 (459)
+++|||++... .+......+...++.....+..+|++|+..++.+
T Consensus 103 llilDE~~~~~-------------~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~~ 147 (180)
T 3ec2_A 103 VLVLDDLGSER-------------LSDWQRELISYIITYRYNNLKSTIITTNYSLQRE 147 (180)
T ss_dssp EEEEETCSSSC-------------CCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC-
T ss_pred EEEEeCCCCCc-------------CCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhHh
Confidence 99999986331 1123344555556555545666777666666553
No 85
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.02 E-value=5.1e-10 Score=130.20 Aligned_cols=162 Identities=14% Similarity=0.140 Sum_probs=108.7
Q ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHH--Hh------------------cCCC---Cc----cccCCcEEEEecCCCCh
Q 012655 154 FDGMWESLIYESGLKQRLLHYAASALMF--AE------------------KGVN---PF----LVSWNRIVLLHGPPGTG 206 (459)
Q Consensus 154 ~~~~~~~li~~~~~k~~L~~~~~~~~~~--~~------------------~g~~---~~----~i~~~~~vLL~GPpGtG 206 (459)
...-|+++-+.+++|+.+++.+.+++.+ .. .|+. .. .++.|+.++||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3456999999999999999999888732 21 1111 00 13457779999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCcceEEEEcccccc------------ccccch----hhHHHHHHHHHHHHHHHhcccchh
Q 012655 207 KTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF------------SKWFSE----SGKLVAKLFQKIQEMVEEENNLVF 270 (459)
Q Consensus 207 KTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~------------~~~~~e----~~~~v~~~f~~~~~~~~~~~~~~i 270 (459)
||+||++++.+.... +.+-+.|...... ++|+++ +++.+..+|..++. ..+++
T Consensus 1095 KT~la~~~~~~~~~~------g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~-----~~~~~ 1163 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS-----GAVDV 1163 (1706)
T ss_dssp HHHHHHHHHHHHHHT------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH-----TCCSE
T ss_pred hHHHHHHHHHHhhhc------CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh-----cCCeE
Confidence 999999999887543 1222445544433 566777 78889888887776 48999
Q ss_pred hhhhhhHhHHHhhhhc--cCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCc
Q 012655 271 VLIDEVESLAAARKAA--LSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA 326 (459)
Q Consensus 271 llIDEid~l~~~r~~~--ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ 326 (459)
+++|+++.|.+.+... .+..+.....|+++++++.++.+....+++||+|....+.
T Consensus 1164 i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n~~~~~ 1221 (1706)
T 3cmw_A 1164 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 1221 (1706)
T ss_dssp EEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEECEEEC
T ss_pred EEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEecccccc
Confidence 9999999998886421 2222235567889999999999877788888865443333
No 86
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.99 E-value=2.9e-10 Score=99.63 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=68.2
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
++.++|+||+|+|||||++++++.+.. .+...+++++.++.... + ...+.+++|
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~------~g~~~~~~~~~~~~~~~-----------------~---~~~~~lLil 89 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE------AGKNAAYIDAASMPLTD-----------------A---AFEAEYLAV 89 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT------TTCCEEEEETTTSCCCG-----------------G---GGGCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh------cCCcEEEEcHHHhhHHH-----------------H---HhCCCEEEE
Confidence 678999999999999999999998842 12235777776665430 0 125789999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCE-EEEEecCCCCccc--HHHhccCC
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV-IILTTSNITAAID--IAFVDRAD 336 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~v-iIi~Ttn~~~~ld--~al~~R~~ 336 (459)
||++.+... . ...++..++.+...+.. +|++|+..+..+. +.+.+|+.
T Consensus 90 DE~~~~~~~--------------~-~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 90 DQVEKLGNE--------------E-QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp ESTTCCCSH--------------H-HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred eCccccChH--------------H-HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 998764321 1 45566666665555555 6666655565442 78888874
No 87
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.99 E-value=2.1e-09 Score=109.72 Aligned_cols=207 Identities=20% Similarity=0.236 Sum_probs=111.9
Q ss_pred EEEEecCCCChHHHHHHHH-HHHhcccccCCCCcceEEEEccc---ccccc------ccchhhHHHHHHHHHHHHHHHhc
Q 012655 196 IVLLHGPPGTGKTSLCKAL-AQKLSIRFSSRYPQCQLVEVNAH---SLFSK------WFSESGKLVAKLFQKIQEMVEEE 265 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaral-A~~l~~~~~~~~~~~~~i~i~~~---~l~~~------~~~e~~~~v~~~f~~~~~~~~~~ 265 (459)
++||.|+||| ||++++++ ++.+.... +....+. .+... |..+.+... .
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~--------ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~-----L-------- 298 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGV--------YVDLRRTELTDLTAVLKEDRGWALRAGAAV-----L-------- 298 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEE--------EEEGGGCCHHHHSEEEEESSSEEEEECHHH-----H--------
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeE--------EecCCCCCccCceEEEEcCCCcccCCCeeE-----E--------
Confidence 6999999999 99999999 76543211 1100000 01100 111111110 0
Q ss_pred ccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh-------cCCCCEEEEEecCCCC-----------cc
Q 012655 266 NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL-------KSSPNVIILTTSNITA-----------AI 327 (459)
Q Consensus 266 ~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l-------~~~~~viIi~Ttn~~~-----------~l 327 (459)
....++++||++.+.. ..+..|+..|+.- .-..++.||+|+|+.. .|
T Consensus 299 AdgGvl~lDEIn~~~~---------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~L 363 (506)
T 3f8t_A 299 ADGGILAVDHLEGAPE---------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDL 363 (506)
T ss_dssp TTTSEEEEECCTTCCH---------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCS
T ss_pred cCCCeeehHhhhhCCH---------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCC
Confidence 2347999999987654 5567777777642 1234688999999865 67
Q ss_pred cHHHhccCCeEEE-eCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhh-cCCchhHHhhh--hhhHHHH
Q 012655 328 DIAFVDRADIKAY-VGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKE-KLSNPDIQEAD--RSQHFYK 403 (459)
Q Consensus 328 d~al~~R~~~~i~-~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~i~~~~--~~~~~~~ 403 (459)
..++++|||..+. ++.|+.+.-.+-. . ...+...+..+..... ....+.+.+.. .......
T Consensus 364 p~alLDRFDLi~i~~d~pd~e~d~e~~---------~------~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~ 428 (506)
T 3f8t_A 364 DQDFLSHFDLIAFLGVDPRPGEPEEQD---------T------EVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYE 428 (506)
T ss_dssp CHHHHTTCSEEEETTC-----------------------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHH
T ss_pred ChHHhhheeeEEEecCCCChhHhhccc---------C------CCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHH
Confidence 8999999997664 4667665432100 0 0001111222222222 11111111110 0111111
Q ss_pred HHHHHH-H------HccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHHHHh
Q 012655 404 QLLEAA-E------ACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTARKER 454 (459)
Q Consensus 404 ~L~~la-~------~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~~~ 454 (459)
.++.-. . ..-|.|.|.+..|+..| +|...++..++.+|+..|++-+....+
T Consensus 429 ~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~ 488 (506)
T 3f8t_A 429 TRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLE 488 (506)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHH
T ss_pred HHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHH
Confidence 222210 0 25588999999999888 777889999999999999876655433
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.95 E-value=1.1e-08 Score=123.82 Aligned_cols=146 Identities=18% Similarity=0.295 Sum_probs=89.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHH----------
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVE---------- 263 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~---------- 263 (459)
++++||+||||||||++|+.+..... +..++.++.+...+ ...+...+........
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~--------~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~ 1332 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSS--------LYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPK 1332 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCS--------SCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEB
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCC--------CCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCC
Confidence 46699999999999999966655431 22346666655432 1222222222100000
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC--------CCCEEEEEecCCCC-----cccHH
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS--------SPNVIILTTSNITA-----AIDIA 330 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~--------~~~viIi~Ttn~~~-----~ld~a 330 (459)
......|+||||++.....+. |. ......+.++++. .++.. -.++.+|+++|++. .++++
T Consensus 1333 ~~gk~~VlFiDEinmp~~d~y----g~--q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A 1333 SDIKNLVLFCDEINLPKLDKY----GS--QNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp SSSSCEEEEEETTTCSCCCSS----SC--CHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHH
T ss_pred CCCceEEEEeccccccccccc----Cc--hhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChh
Confidence 012346999999885322211 11 1122333333221 01111 12588999999995 78999
Q ss_pred HhccCCeEEEeCCCCHHHHHHHHHHHHHHHH
Q 012655 331 FVDRADIKAYVGPPTLQARYEILRSCLQELI 361 (459)
Q Consensus 331 l~~R~~~~i~~~~P~~~~r~~Il~~~l~~~~ 361 (459)
|++|| .+++++.|+.+++..|+..++....
T Consensus 1406 llRrf-~vi~i~~P~~~~l~~I~~~il~~~l 1435 (2695)
T 4akg_A 1406 FTRHA-AILYLGYPSGKSLSQIYEIYYKAIF 1435 (2695)
T ss_dssp HHTTE-EEEECCCCTTTHHHHHHHHHHHHHT
T ss_pred hhhee-eEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 99999 8899999999999999999998754
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.71 E-value=2.9e-09 Score=97.37 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=43.4
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhh-HHHHHHHHHHHHHHHhcccchhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESG-KLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~-~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
.+++|+||+|||||+|++++++.+... +..++.+++..+......... .....++.... .+.+|+|
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lil 121 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR------NVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK-------KVPVLML 121 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT------TCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH-------HSSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc-------CCCEEEE
Confidence 679999999999999999999988532 233456666554332211000 00112222221 3469999
Q ss_pred hhhHhH
Q 012655 274 DEVESL 279 (459)
Q Consensus 274 DEid~l 279 (459)
||++..
T Consensus 122 Dei~~~ 127 (202)
T 2w58_A 122 DDLGAE 127 (202)
T ss_dssp EEECCC
T ss_pred cCCCCC
Confidence 999654
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.66 E-value=2.6e-07 Score=112.09 Aligned_cols=131 Identities=21% Similarity=0.230 Sum_probs=90.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
+.++++.||+|||||++++++|+.+|.++ +.++|++-+. ...+..+|..+.. .++.+++
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~---------v~~nc~e~ld------~~~lg~~~~g~~~------~Gaw~~~ 703 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVV---------VVFNCDDSFD------YQVLSRLLVGITQ------IGAWGCF 703 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCC---------EEEETTSSCC------HHHHHHHHHHHHH------HTCEEEE
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcE---------EEEECCCCCC------hhHhhHHHHHHHh------cCCEeee
Confidence 46699999999999999999999999877 8899987543 2344566655443 4578999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh-----------hcCCCCEEEEEecCC----CCcccHHHhccCCeE
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK-----------LKSSPNVIILTTSNI----TAAIDIAFVDRADIK 338 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~-----------l~~~~~viIi~Ttn~----~~~ld~al~~R~~~~ 338 (459)
||++++.....+.++ ..+..+...+.. ++-+....|++|.|+ ...++.++++|| +.
T Consensus 704 DE~nr~~~evLs~l~--------~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~ 774 (2695)
T 4akg_A 704 DEFNRLDEKVLSAVS--------ANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-RE 774 (2695)
T ss_dssp ETTTSSCHHHHHHHH--------HHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EE
T ss_pred hhhhhcChHHHHHHH--------HHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EE
Confidence 999877553221110 111111222211 112345678889984 445899999999 88
Q ss_pred EEeCCCCHHHHHHHHH
Q 012655 339 AYVGPPTLQARYEILR 354 (459)
Q Consensus 339 i~~~~P~~~~r~~Il~ 354 (459)
+.+..|+.+...+|+-
T Consensus 775 v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 775 FSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp EECCCCCHHHHHHHHH
T ss_pred EEeeCCCHHHHHHHHH
Confidence 9999999988887753
No 91
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.59 E-value=2.2e-08 Score=97.94 Aligned_cols=113 Identities=18% Similarity=0.293 Sum_probs=59.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
++.++|+||||||||+||..++...+.+ +.++.....+..+.+.......+..+++.+.+ .. +|+|
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~-------VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~------~~-LLVI 188 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGK-------DKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ------HR-VIVI 188 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTT-------SCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH------CS-EEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCC-------EEEEEecchhhhhhhhcCHHHHHHHHHHHHhh------CC-EEEE
Confidence 6778999999999999999999873322 11244411222222222222333333333332 23 9999
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCC
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~ 323 (459)
|+++.+....... ..+....+.+.+++..|.++....++.++.++|.
T Consensus 189 DsI~aL~~~~~~~---s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 189 DSLKNVIGAAGGN---TTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp ECCTTTC--------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred ecccccccccccc---cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 9999885433211 1111123445566666665544445667777774
No 92
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.57 E-value=4.4e-07 Score=89.32 Aligned_cols=161 Identities=19% Similarity=0.248 Sum_probs=90.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.++|.+...+.|.+.+.. ++.++|+||+|+|||+|++.+++..+ .+.+++..
T Consensus 12 ~~~~gR~~el~~L~~~l~~----------------~~~v~i~G~~G~GKT~Ll~~~~~~~~-----------~~~~~~~~ 64 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN----------------YPLTLLLGIRRVGKSSLLRAFLNERP-----------GILIDCRE 64 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH----------------CSEEEEECCTTSSHHHHHHHHHHHSS-----------EEEEEHHH
T ss_pred HhcCChHHHHHHHHHHHhc----------------CCeEEEECCCcCCHHHHHHHHHHHcC-----------cEEEEeec
Confidence 4577888777777766542 24699999999999999999998763 24444432
Q ss_pred cc------------c---cccch---------------------hhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHh
Q 012655 239 LF------------S---KWFSE---------------------SGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAA 282 (459)
Q Consensus 239 l~------------~---~~~~e---------------------~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~ 282 (459)
.. . ..... .......++......... ..+.+|+|||++.+...
T Consensus 65 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~vlvlDe~~~~~~~ 143 (350)
T 2qen_A 65 LYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEE-LGEFIVAFDEAQYLRFY 143 (350)
T ss_dssp HHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHH-HSCEEEEEETGGGGGGB
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhc-cCCEEEEEeCHHHHhcc
Confidence 21 0 00000 001123333333332222 13789999999988641
Q ss_pred hhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCccc---------HHHhccCCeEEEeCCCCHHHHHHHH
Q 012655 283 RKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAID---------IAFVDRADIKAYVGPPTLQARYEIL 353 (459)
Q Consensus 283 r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld---------~al~~R~~~~i~~~~P~~~~r~~Il 353 (459)
. ..........+...++.. .++.++.|+.....+. ..+.+|+...+.+++.+.++..+++
T Consensus 144 ~--------~~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l 212 (350)
T 2qen_A 144 G--------SRGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFL 212 (350)
T ss_dssp T--------TTTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHH
T ss_pred C--------ccchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHH
Confidence 0 001123333333333332 3444444443221111 2234566678999999999999998
Q ss_pred HHHHH
Q 012655 354 RSCLQ 358 (459)
Q Consensus 354 ~~~l~ 358 (459)
...+.
T Consensus 213 ~~~~~ 217 (350)
T 2qen_A 213 KRGFR 217 (350)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 93
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.56 E-value=2.5e-07 Score=83.25 Aligned_cols=27 Identities=37% Similarity=0.731 Sum_probs=24.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.+.|.||||+|||||++.|++.+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 488999999999999999999987544
No 94
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.55 E-value=6.1e-08 Score=74.93 Aligned_cols=74 Identities=23% Similarity=0.242 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHHh
Q 012655 342 GPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSLR 421 (459)
Q Consensus 342 ~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L~ 421 (459)
|+|+.++|.+||+.++++... .. + ..+..||+.|+||||.||.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~---------~~-----------------~-----------~dl~~la~~t~G~SGADi~ 43 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNL---------TR-----------------G-----------INLRKIAELMPGASGAEVK 43 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEE---------CT-----------------T-----------CCHHHHHHTCTTCCHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCC---------CC-----------------c-----------cCHHHHHHHcCCCCHHHHH
Confidence 689999999999998876410 00 0 1277899999999999999
Q ss_pred chHHHH--HHhhcCCCCCCHHHHHHHHHHHHHH
Q 012655 422 KLPFLA--HAALANPNGCDPSKFLLTVIDTARK 452 (459)
Q Consensus 422 ~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~~ 452 (459)
.++..| .+...+...++.+||..|+.+..+.
T Consensus 44 ~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 44 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 999999 6666778899999999999988754
No 95
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.55 E-value=3.2e-07 Score=92.76 Aligned_cols=139 Identities=21% Similarity=0.241 Sum_probs=87.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHH-----------HHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ-----------EMVE 263 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~-----------~~~~ 263 (459)
..++|+|++|||||++|+++..... .....++.+||..+..... -..+|.... ..+.
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~------r~~~~fv~v~~~~~~~~~~------~~elfg~~~g~~tga~~~~~g~~~ 228 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSD------RSKEPFVALNVASIPRDIF------EAELFGYEKGAFTGAVSSKEGFFE 228 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHST------TTTSCEEEEETTTSCHHHH------HHHHHCBCTTSSTTCCSCBCCHHH
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcC------CCCCCeEEEecCCCCHHHH------HHHhcCCCCCCCCCcccccCCcee
Confidence 4489999999999999999998764 2345679999987632111 111221100 0011
Q ss_pred hcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--C-------CCCEEEEEecCCC-------Ccc
Q 012655 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNIT-------AAI 327 (459)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~--~-------~~~viIi~Ttn~~-------~~l 327 (459)
. ...+.||||||+.+.. ..+..|+..++.-. + ..++.||++||.. ..+
T Consensus 229 ~-a~~gtlfldei~~l~~---------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~f 292 (387)
T 1ny5_A 229 L-ADGGTLFLDEIGELSL---------------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKF 292 (387)
T ss_dssp H-TTTSEEEEESGGGCCH---------------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred e-CCCcEEEEcChhhCCH---------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCc
Confidence 1 2347899999998754 45667777776421 1 1246788888863 234
Q ss_pred cHHHhccC-CeEEEeCCCCH--HHHHHHHHHHHHHHH
Q 012655 328 DIAFVDRA-DIKAYVGPPTL--QARYEILRSCLQELI 361 (459)
Q Consensus 328 d~al~~R~-~~~i~~~~P~~--~~r~~Il~~~l~~~~ 361 (459)
.+.+..|+ ...+.+|+..+ ++...++.+++.+..
T Consensus 293 r~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~ 329 (387)
T 1ny5_A 293 REDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFS 329 (387)
T ss_dssp CHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHH
Confidence 55666665 35567777654 566777788877653
No 96
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.50 E-value=9.3e-08 Score=96.02 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=34.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|||||||+|+|++... +..+.+.+++.+
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-------p~~G~I~i~G~~ 66 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-------ITSGDLFIGEKR 66 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC-------CSEEEEEETTEE
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCCC-------CCCeEEEECCEE
Confidence 5667799999999999999999999999873 344555555543
No 97
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.49 E-value=4.2e-08 Score=94.54 Aligned_cols=44 Identities=16% Similarity=0.344 Sum_probs=34.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..+.|.||+|+|||||+++|++.+. +..+.|.+++.++
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-------p~~G~I~~~G~~i 72 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILK-------PSSGRILFDNKPI 72 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSC-------CSEEEEEETTEEC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-------CCCeEEEECCEEC
Confidence 5677799999999999999999999999873 4455566665443
No 98
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.45 E-value=3.2e-07 Score=83.85 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=23.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.++++|+||||||||++|.++|+.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999999984
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.44 E-value=7e-07 Score=88.02 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=33.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 158 ~~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+.++|.+...+.|.+ +.. ..++|+||+|+|||+|++.+++..+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~-----------------~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA-----------------PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS-----------------SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHhcChHHHHHHHHH-hcC-----------------CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456777766666655 321 3599999999999999999999874
No 100
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.42 E-value=1.3e-07 Score=86.58 Aligned_cols=135 Identities=18% Similarity=0.188 Sum_probs=72.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCc-ceEEEEcccccccccc----------chhhH--HHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ-CQLVEVNAHSLFSKWF----------SESGK--LVAKLFQKIQEM 261 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~-~~~i~i~~~~l~~~~~----------~e~~~--~v~~~f~~~~~~ 261 (459)
-.++++|+||||||++|..++.... .+.....+ ..++..+...+...+. ..... ....++ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~-~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~----~~ 80 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDE-MFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMY----EW 80 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCG-GGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHH----HH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH-hhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHH----HH
Confidence 4589999999999999988755431 00000011 2223344444432221 00000 001111 11
Q ss_pred H-HhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEE
Q 012655 262 V-EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAY 340 (459)
Q Consensus 262 ~-~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~ 340 (459)
. ......++|+|||++.+...+... .+ ..+ ++..+..-+..+.-+|++ ++.+..++.++++|++..+.
T Consensus 81 ~~~~~~~~~vliIDEAq~l~~~~~~~---~e---~~r----ll~~l~~~r~~~~~iil~-tq~~~~l~~~lr~ri~~~~~ 149 (199)
T 2r2a_A 81 IKKPENIGSIVIVDEAQDVWPARSAG---SK---IPE----NVQWLNTHRHQGIDIFVL-TQGPKLLDQNLRTLVRKHYH 149 (199)
T ss_dssp TTSGGGTTCEEEETTGGGTSBCCCTT---CC---CCH----HHHGGGGTTTTTCEEEEE-ESCGGGBCHHHHTTEEEEEE
T ss_pred hhccccCceEEEEEChhhhccCcccc---ch---hHH----HHHHHHhcCcCCeEEEEE-CCCHHHHhHHHHHHhheEEE
Confidence 0 011246899999999986543211 11 112 444554434444445444 45588999999999999998
Q ss_pred eCCCC
Q 012655 341 VGPPT 345 (459)
Q Consensus 341 ~~~P~ 345 (459)
+..|.
T Consensus 150 l~~~~ 154 (199)
T 2r2a_A 150 IASNK 154 (199)
T ss_dssp EEECS
T ss_pred EcCcc
Confidence 87754
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.41 E-value=2.9e-06 Score=103.87 Aligned_cols=143 Identities=20% Similarity=0.285 Sum_probs=85.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHh---------
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEE--------- 264 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~--------- 264 (459)
++.+||+||+|||||++++.....+. +..++.++.+.-.+ ...+...++..-+....
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~--------~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p 1369 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFP--------DFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRP 1369 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCT--------TEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCC--------CCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCC
Confidence 34599999999999988766544331 22346677665432 12222222210000000
Q ss_pred --cccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHh--h--------cCCCCEEEEEecCCCC-----cc
Q 012655 265 --ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK--L--------KSSPNVIILTTSNITA-----AI 327 (459)
Q Consensus 265 --~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~--l--------~~~~~viIi~Ttn~~~-----~l 327 (459)
.+...|+||||++.-... ..++...+..|...++. + +.-.++.+|+|.|++. .+
T Consensus 1370 ~~~Gk~~VlFiDDiNmp~~D---------~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l 1440 (3245)
T 3vkg_A 1370 TQLGKWLVVFCDEINLPSTD---------KYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQL 1440 (3245)
T ss_dssp SSTTCEEEEEETTTTCCCCC---------TTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCC
T ss_pred CcCCceEEEEecccCCCCcc---------ccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccC
Confidence 022358999998743221 11222333333333331 1 1124578999999884 47
Q ss_pred cHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Q 012655 328 DIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (459)
Q Consensus 328 d~al~~R~~~~i~~~~P~~~~r~~Il~~~l~~~ 360 (459)
+++|++|| ..++++.|+.+....|+..++...
T Consensus 1441 ~~Rf~r~F-~vi~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1441 THRFLRHA-PILLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp CHHHHTTC-CEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999 668999999999999999987765
No 102
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.41 E-value=4.8e-08 Score=95.82 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=42.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc-ccccCCCCcceEEEEccccccccccchh-hHHHHHHHHHHHHHHHhcccchhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS-IRFSSRYPQCQLVEVNAHSLFSKWFSES-GKLVAKLFQKIQEMVEEENNLVFV 271 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~-~~~~~~~~~~~~i~i~~~~l~~~~~~e~-~~~v~~~f~~~~~~~~~~~~~~il 271 (459)
+.+++|+||||||||+|+++++..+. .. +..++.+++.+++....... ......++... ....+|
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~------g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~lL 218 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK------GVSTTLLHFPSFAIDVKNAISNGSVKEEIDAV-------KNVPVL 218 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS------CCCEEEEEHHHHHHHHHCCCC----CCTTHHH-------HTSSEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc------CCcEEEEEHHHHHHHHHHHhccchHHHHHHHh-------cCCCEE
Confidence 46799999999999999999999875 32 12345566655543222110 00111111111 145689
Q ss_pred hhhhhHhH
Q 012655 272 LIDEVESL 279 (459)
Q Consensus 272 lIDEid~l 279 (459)
+|||++..
T Consensus 219 iiDdig~~ 226 (308)
T 2qgz_A 219 ILDDIGAE 226 (308)
T ss_dssp EEETCCC-
T ss_pred EEcCCCCC
Confidence 99998543
No 103
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.40 E-value=2.6e-08 Score=95.64 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5677799999999999999999999999873
No 104
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.36 E-value=2.9e-07 Score=91.73 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=33.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|||||||+|+|++... |..+.|.+++.+
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-------p~~G~I~i~G~~ 67 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-------PDSGEISLSGKT 67 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCCC-------CCCcEEEECCEE
Confidence 5667799999999999999999999999873 344445555443
No 105
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.34 E-value=2.9e-07 Score=91.73 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=33.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|||||||+|+|++... +..+.+.+++.+
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-------p~~G~I~i~g~~ 78 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLER-------PTKGDVWIGGKR 78 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC-------CSEEEEEETTEE
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCC-------CCccEEEECCEE
Confidence 5566789999999999999999999999873 344555555543
No 106
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.34 E-value=1.2e-06 Score=83.51 Aligned_cols=42 Identities=29% Similarity=0.461 Sum_probs=33.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
+.+..|..+.|.||+|+|||||+++|++.+. |..+.+.+++.
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-------p~~G~I~~~g~ 77 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-------PSSGIVTVFGK 77 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC-------CSEEEEEETTE
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-------CCceEEEECCE
Confidence 5567789999999999999999999999873 34455655553
No 107
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.34 E-value=3.2e-07 Score=91.60 Aligned_cols=30 Identities=40% Similarity=0.454 Sum_probs=27.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|||||||+|+|++..
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 556778999999999999999999999987
No 108
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.32 E-value=3.8e-07 Score=71.81 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=58.8
Q ss_pred eCCCCHHHHHHHHHHHHHHHHHhccccCCccccCCcccchHHHhhcCCchhHHhhhhhhHHHHHHHHHHHHccCCChHHH
Q 012655 341 VGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEACEGLSGRSL 420 (459)
Q Consensus 341 ~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~L~~la~~~~G~Sgr~L 420 (459)
-.+|+.++|.+||+.++++..- ..+ ..+..||+.|+||||.||
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l---------~~d----------------------------vdl~~LA~~T~G~SGADL 50 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNL---------TRG----------------------------INLRKIAELMPGASGAEV 50 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEE---------CTT----------------------------CCCHHHHHTCSSCCHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCC---------Ccc----------------------------cCHHHHHHHcCCCCHHHH
Confidence 3689999999999999886410 000 126789999999999999
Q ss_pred hchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 421 RKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 421 ~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
..||..| .|.......|+.+||..|+.+..
T Consensus 51 ~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~ 82 (86)
T 2krk_A 51 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 82 (86)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 9999998 56666678899999999998765
No 109
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.32 E-value=1.5e-06 Score=81.14 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=33.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||++++++.+. |..+.+.+++.+
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-------p~~G~i~~~g~~ 67 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDA-------PTEGKVFLEGKE 67 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCceEEEECCEE
Confidence 5567789999999999999999999999873 344556565543
No 110
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.32 E-value=8.8e-07 Score=83.10 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=23.2
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHH
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~ 216 (459)
+..|..++|.||||+|||||++.++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 34588999999999999999999994
No 111
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.31 E-value=1.7e-06 Score=80.05 Aligned_cols=146 Identities=14% Similarity=0.200 Sum_probs=72.2
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccc-----cc------c-----------h-hh
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK-----WF------S-----------E-SG 248 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~-----~~------~-----------e-~~ 248 (459)
..|..+.|.||||+|||||++.+++.+..+-.......+.+.++....+.. .+ . . ..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 348899999999999999999999976433222122344566665442110 00 0 0 00
Q ss_pred HHHHHHHHHHHHHHH----hcccchhhhhhhhHhHHHhhhhccCCCCCCch--HHHHHHHHHHHHhhc-CCCCEEEEEec
Q 012655 249 KLVAKLFQKIQEMVE----EENNLVFVLIDEVESLAAARKAALSGSEPSDS--IRVVNALLTQMDKLK-SSPNVIILTTS 321 (459)
Q Consensus 249 ~~v~~~f~~~~~~~~----~~~~~~illIDEid~l~~~r~~~ls~~e~~~~--~~~~~~ll~~l~~l~-~~~~viIi~Tt 321 (459)
.........+...+. ....|.+++|||+....... +++++ ... .+....++..+..+. ..+..+|++||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~---~~~~~-~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH 178 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE---YIGRG-ALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 178 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH---SCSTT-HHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc---cCCCc-chhHHHHHHHHHHHHHHHHHHHCCCeEEEEee
Confidence 111111222222222 13467899999987664432 11111 011 112334555554443 34677888888
Q ss_pred CCCCcccHHHh-ccCCeEEEeCC
Q 012655 322 NITAAIDIAFV-DRADIKAYVGP 343 (459)
Q Consensus 322 n~~~~ld~al~-~R~~~~i~~~~ 343 (459)
...+ +..++ .-+|.++.+..
T Consensus 179 ~~~~--~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 179 VQAN--GGHILAHSATLRVYLRK 199 (231)
T ss_dssp CC-----------CCSEEEEEEE
T ss_pred cccC--cchhhHhhceEEEEEEe
Confidence 6554 22222 33455665543
No 112
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.30 E-value=3.7e-07 Score=91.10 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=35.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..+.|.||+|+|||||+|+|++.. .|..+.+.+++.++
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~-------~p~~G~I~i~G~~i 92 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLE-------RPTEGSVLVDGQEL 92 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS-------CCSEEEEEETTEEC
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCC-------CCCceEEEECCEEC
Confidence 567779999999999999999999999987 34555566666543
No 113
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.29 E-value=1.1e-06 Score=83.88 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=33.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||++++++.+. |..+.+.+++.+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-------p~~G~i~~~g~~ 70 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLK-------ADEGRVYFENKD 70 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSSC-------CSEEEEEETTEE
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCcEEEECCEE
Confidence 5677799999999999999999999999873 344555555533
No 114
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.28 E-value=3.9e-07 Score=91.05 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=33.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
+.+..|..+.|.||+|||||||+|+|++... +..+.+.+++.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-------p~~G~I~i~g~ 65 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-------PTSGKIYFDEK 65 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC-------CSEEEEEETTE
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCC-------CCceEEEECCE
Confidence 5567789999999999999999999999873 34444555543
No 115
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.27 E-value=1.5e-06 Score=81.69 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=34.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||+++|++.+. |..+.+.+++.+
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-------p~~G~I~~~g~~ 68 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-------PTEGEVYIDNIK 68 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-------CCceEEEECCEE
Confidence 5677799999999999999999999999873 445556665543
No 116
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.27 E-value=2.5e-06 Score=81.55 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=33.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||+++|++.+. |..+.+.+++.+
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-------p~~G~I~~~g~~ 87 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLED-------FDEGEIIIDGIN 87 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-------CCCcEEEECCEE
Confidence 5567789999999999999999999999873 344556665543
No 117
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.26 E-value=6.4e-07 Score=89.91 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=33.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|||||||+|+|++... +..+.+.+++.+
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-------p~~G~I~i~g~~ 66 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-------PSRGQIYIGDKL 66 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-------CCccEEEECCEE
Confidence 5567789999999999999999999999873 344445555433
No 118
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.24 E-value=2.8e-06 Score=80.59 Aligned_cols=31 Identities=35% Similarity=0.397 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5567789999999999999999999999874
No 119
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.24 E-value=4.7e-07 Score=90.07 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=34.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|||||||+|+|++.. .+..+.+.+++.+
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-------~p~~G~I~~~g~~ 63 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFH-------VPDSGRILLDGKD 63 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSS-------CCSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCC-------CCCCcEEEECCEE
Confidence 556778999999999999999999999987 3445556666544
No 120
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.20 E-value=2.8e-06 Score=80.08 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=31.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
+.+.. ..+.|.||+|+|||||++++++.+. |..+.+.+++
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-------p~~G~i~~~g 59 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-------PDRGEVRLNG 59 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSC-------CSEEEEEETT
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCC-------CCceEEEECC
Confidence 55667 8899999999999999999999873 3444455554
No 121
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.20 E-value=1.3e-07 Score=94.99 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=34.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..+.|.||+|||||||+|+|++... +..+.+.+++.++
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-------p~~G~I~i~g~~i 75 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-------PTEGRIYFGDRDV 75 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC-------CSEEEEEETTEEC
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCC-------CCceEEEECCEEC
Confidence 5566789999999999999999999999873 4455566665443
No 122
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.20 E-value=2.7e-06 Score=100.44 Aligned_cols=121 Identities=13% Similarity=0.210 Sum_probs=74.6
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccccc----------------chhhHHHHHH
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF----------------SESGKLVAKL 254 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~----------------~e~~~~v~~~ 254 (459)
+..+++++|+||||||||+||.+++.+.... +.....++....+.... ......+..+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~------G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc------CCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHH
Confidence 4457899999999999999999998876432 22334455543321111 1122334444
Q ss_pred HHHHHHHHHhcccchhhhhhhhHhHHHhhhh--ccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecC
Q 012655 255 FQKIQEMVEEENNLVFVLIDEVESLAAARKA--ALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSN 322 (459)
Q Consensus 255 f~~~~~~~~~~~~~~illIDEid~l~~~r~~--~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn 322 (459)
+..++. ..+++|+||+++.+.+.... ...........+++.+++..|.......++++|+|..
T Consensus 1498 ~~lvr~-----~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1498 DALARS-----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp HHHHHH-----TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHhc-----CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 444433 57899999999887764321 1111111123577888888888877777777777643
No 123
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.19 E-value=7.3e-07 Score=79.42 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKA 213 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLara 213 (459)
+.+..|..+.|+||||||||||+++
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 4566789999999999999999994
No 124
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.18 E-value=1.1e-05 Score=80.87 Aligned_cols=137 Identities=19% Similarity=0.272 Sum_probs=86.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHH-----------HHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ-----------EMVEE 264 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~-----------~~~~~ 264 (459)
.++++|++||||+++++++....+.. ..++.+||..+-.... ...+|.... ..++.
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~-------~~fv~vnc~~~~~~~~------~~~lfg~~~g~~tga~~~~~g~~~~ 220 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRK-------GAFVDLNCASIPQELA------ESELFGHEKGAFTGALTRKKGKLEL 220 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCC-------SCEEEEESSSSCTTTH------HHHHHEECSCSSSSCCCCEECHHHH
T ss_pred hheEEeCCCchHHHHHHHHHHhcccc-------CCcEEEEcccCChHHH------HHHhcCccccccCCcccccCChHhh
Confidence 39999999999999999999876432 2279999987632211 111111000 00111
Q ss_pred cccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhc--C-------CCCEEEEEecCCCC-------ccc
Q 012655 265 ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNITA-------AID 328 (459)
Q Consensus 265 ~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~--~-------~~~viIi~Ttn~~~-------~ld 328 (459)
.....||||||+.+.. ..+..|+..++.-. + .-.+.+|++||..- .+.
T Consensus 221 -a~~gtlfldei~~l~~---------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr 284 (368)
T 3dzd_A 221 -ADQGTLFLDEVGELDQ---------------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFR 284 (368)
T ss_dssp -TTTSEEEEETGGGSCH---------------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred -cCCCeEEecChhhCCH---------------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCcc
Confidence 2346899999998854 45667777776421 1 11456777777531 234
Q ss_pred HHHhccCC-eEEEeCCCCH--HHHHHHHHHHHHHHH
Q 012655 329 IAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELI 361 (459)
Q Consensus 329 ~al~~R~~-~~i~~~~P~~--~~r~~Il~~~l~~~~ 361 (459)
+.+..|+. ..+.+|+..+ ++...++.+++.+..
T Consensus 285 ~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~ 320 (368)
T 3dzd_A 285 EDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFA 320 (368)
T ss_dssp HHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHH
Confidence 56666764 4578888776 677888888888764
No 125
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.16 E-value=5.9e-07 Score=89.57 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|||||||+++|++...
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5667789999999999999999999999873
No 126
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.12 E-value=9.6e-06 Score=80.23 Aligned_cols=133 Identities=16% Similarity=0.104 Sum_probs=84.8
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhhh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (459)
..++|+||+|.||++.++.+++.+...- +..+..+.+++ ...++.+.+.+....- .....+++||
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-----------~~~~~~l~~~~~~~pl-f~~~kvvii~ 83 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQG---FEEHHTFSIDP-----------NTDWNAIFSLCQAMSL-FASRQTLLLL 83 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHT---CCEEEEEECCT-----------TCCHHHHHHHHHHHHH-CCSCEEEEEE
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCC---CCeeEEEEecC-----------CCCHHHHHHHhcCcCC-ccCCeEEEEE
Confidence 4699999999999999999999774211 11112233321 1223455555443222 2356799999
Q ss_pred hhHh-HHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCC-----CCcccHHHhccCCeEEEeCCCCHHH
Q 012655 275 EVES-LAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI-----TAAIDIAFVDRADIKAYVGPPTLQA 348 (459)
Q Consensus 275 Eid~-l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~-----~~~ld~al~~R~~~~i~~~~P~~~~ 348 (459)
|++. +.. ...++|+..++... .+.++|+++++. ...+-+++.+|+ ..+.+.+++..+
T Consensus 84 ~~~~kl~~---------------~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~ 146 (343)
T 1jr3_D 84 LPENGPNA---------------AINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQ 146 (343)
T ss_dssp CCSSCCCT---------------THHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTH
T ss_pred CCCCCCCh---------------HHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHH
Confidence 9876 432 34677888877632 234555555442 235667788888 788899999888
Q ss_pred HHHHHHHHHHH
Q 012655 349 RYEILRSCLQE 359 (459)
Q Consensus 349 r~~Il~~~l~~ 359 (459)
....++..+++
T Consensus 147 l~~~l~~~~~~ 157 (343)
T 1jr3_D 147 LPRWVAARAKQ 157 (343)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887765
No 127
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.12 E-value=8.9e-07 Score=86.52 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=34.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||++.|++.+. |..+.|.+++.+
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-------p~~G~I~i~G~~ 117 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYD-------ISSGCIRIDGQD 117 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCC-------CCCcEEEECCEE
Confidence 5677799999999999999999999999873 445556666544
No 128
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.11 E-value=8.4e-06 Score=99.84 Aligned_cols=123 Identities=18% Similarity=0.188 Sum_probs=87.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccccchhhHHHHHHHHHHHHHHHhcccchhhhh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (459)
+.+..+.||+|||||.+++.+|+.+|.+. +.+||++-+. ...+..+|.-+.. ..+..++
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~---------~vfnC~~~~d------~~~~g~i~~G~~~------~GaW~cf 662 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFV---------LVFCCDEGFD------LQAMSRIFVGLCQ------CGAWGCF 662 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCE---------EEEECSSCCC------HHHHHHHHHHHHH------HTCEEEE
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeE---------EEEeCCCCCC------HHHHHHHHhhHhh------cCcEEEe
Confidence 35578999999999999999999998776 7889877543 2345555554433 4467789
Q ss_pred hhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHH-------------------hhcCCCCEEEEEecCC----CCcccHH
Q 012655 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMD-------------------KLKSSPNVIILTTSNI----TAAIDIA 330 (459)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~-------------------~l~~~~~viIi~Ttn~----~~~ld~a 330 (459)
||++++... ++..+..++. .++-+..+.|++|.|+ ...++..
T Consensus 663 DEfNrl~~~---------------vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~n 727 (3245)
T 3vkg_A 663 DEFNRLEER---------------ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDN 727 (3245)
T ss_dssp ETTTSSCHH---------------HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHH
T ss_pred hhhhcCCHH---------------HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHH
Confidence 999876542 2222222221 1222345778889984 3568999
Q ss_pred HhccCCeEEEeCCCCHHHHHHHH
Q 012655 331 FVDRADIKAYVGPPTLQARYEIL 353 (459)
Q Consensus 331 l~~R~~~~i~~~~P~~~~r~~Il 353 (459)
++.|| +.+.+..|+.+...+|+
T Consensus 728 Lk~lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 728 LKKLF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp HHTTE-EEEECCSCCHHHHHHHH
T ss_pred HHhhc-EEEEEeCCCHHHHHHHH
Confidence 99999 88999999999888875
No 129
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.10 E-value=1.1e-05 Score=77.35 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=27.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++..
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 556778999999999999999999999974
No 130
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.10 E-value=5.3e-06 Score=78.79 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++++++.+.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567789999999999999999999999874
No 131
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.07 E-value=1.4e-05 Score=74.54 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=31.3
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
.|..++|+||||+|||||++.++.....+-.......+.++++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4889999999999999999999996321100000134567776654
No 132
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.06 E-value=7.9e-06 Score=77.46 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=33.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||+++|++.... .+..+.+.+++.+
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~-----~p~~G~I~~~g~~ 68 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGDPEY-----TVERGEILLDGEN 68 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTCTTC-----EEEEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCceEEEECCEE
Confidence 55677999999999999999999999996210 1234456666543
No 133
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.03 E-value=7.4e-06 Score=64.68 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHH
Q 012655 405 LLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTAR 451 (459)
Q Consensus 405 L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~ 451 (459)
+..||+.|+||||.||..||..| .|.......++.+||..|+.+...
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 77899999999999999999988 666677888999999999987753
No 134
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.01 E-value=5.6e-06 Score=75.96 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCcEEEEecCCCChHHHHHHHHHH
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~ 216 (459)
.|..++|+||||+|||||++.++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999998
No 135
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.00 E-value=6.9e-06 Score=75.80 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
.|..++|+||||+|||||++.++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999999765
No 136
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.97 E-value=1e-05 Score=80.52 Aligned_cols=120 Identities=15% Similarity=0.220 Sum_probs=66.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccccc------------chhhHHHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF------------SESGKLVAKLFQKIQEM 261 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~------------~e~~~~v~~~f~~~~~~ 261 (459)
|..++|+||||+||||||..++..+... +..+++++......... -.....+..+...+..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 7889999999999999999999887421 22345666554321100 00001122333333333
Q ss_pred HHhcccchhhhhhhhHhHHH-hhhhccCCCCCC--chHHHHHHHHHHHHhhcCCCCEEEEEec
Q 012655 262 VEEENNLVFVLIDEVESLAA-ARKAALSGSEPS--DSIRVVNALLTQMDKLKSSPNVIILTTS 321 (459)
Q Consensus 262 ~~~~~~~~illIDEid~l~~-~r~~~ls~~e~~--~~~~~~~~ll~~l~~l~~~~~viIi~Tt 321 (459)
.. ...+.+++||.+..+.. ..... ..++.. ...+.+..++..|..+....++.||.+.
T Consensus 135 ~~-~~~~dlvVIDSi~~l~~~~el~g-~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 135 VR-SGVVDLIVVDSVAALVPRAEIEG-AMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp HH-TSCCSEEEEECTTTCCCHHHHTT-CCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hh-hcCCCeEEehHhhhhcChhhhcc-cchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 22 24678999999877754 21110 011111 2246667777777776555555555543
No 137
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.97 E-value=9.8e-06 Score=81.71 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|||||||+++|++.+.
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 5667799999999999999999999999763
No 138
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=97.91 E-value=1.8e-05 Score=61.58 Aligned_cols=47 Identities=13% Similarity=0.027 Sum_probs=40.1
Q ss_pred HHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHHH
Q 012655 405 LLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTAR 451 (459)
Q Consensus 405 L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~~ 451 (459)
+..+|+.|+||||.||..++..| .+.......++.+||..|+.....
T Consensus 25 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~p 73 (83)
T 3aji_B 25 LEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIK 73 (83)
T ss_dssp THHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHcc
Confidence 67899999999999999999998 444556678999999999987643
No 139
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.88 E-value=9.3e-06 Score=86.69 Aligned_cols=44 Identities=25% Similarity=0.378 Sum_probs=35.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|+.+.|.||+|+|||||++.+++.+. |..+.+.+++.++
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-------p~~G~i~~~g~~i 419 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYD-------VDRGQILVDGIDI 419 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSC-------CSEEEEEETTEEG
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcC-------CCCeEEEECCEEh
Confidence 5677799999999999999999999999873 4555676766544
No 140
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.87 E-value=2.7e-05 Score=77.41 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=68.5
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccc-c----------c----------cch--
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS-K----------W----------FSE-- 246 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~-~----------~----------~~e-- 246 (459)
.+..|..+.|+||||+|||||++.++.....+......+...++++....+. . + +..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 3556899999999999999999999998732210000113446666644310 0 0 000
Q ss_pred hhHHHHHHHHHHHHHHHhc----ccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcC-CCCEEEEEec
Q 012655 247 SGKLVAKLFQKIQEMVEEE----NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS-SPNVIILTTS 321 (459)
Q Consensus 247 ~~~~v~~~f~~~~~~~~~~----~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~-~~~viIi~Tt 321 (459)
.......++..+...+... ..+.+|+|||+-.+...... +.++.......+..++..|..+.. .+..+|++++
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~--~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h 284 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYI--GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 284 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCC--STTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhc--ccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 0111223344444444321 46889999998776643210 000000111234555555555533 3556666666
Q ss_pred CC
Q 012655 322 NI 323 (459)
Q Consensus 322 n~ 323 (459)
..
T Consensus 285 ~~ 286 (349)
T 1pzn_A 285 VQ 286 (349)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 141
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.84 E-value=2.1e-05 Score=83.80 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=26.6
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..|..+.|.||||+|||||++.|++.+..
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 456899999999999999999999998753
No 142
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.84 E-value=3.8e-05 Score=75.51 Aligned_cols=128 Identities=17% Similarity=0.265 Sum_probs=67.9
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccc-----c---cc---------------hhhH
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK-----W---FS---------------ESGK 249 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~-----~---~~---------------e~~~ 249 (459)
.|..++|+||||+|||++|..++.....+-.......+.++++....+.. + ++ ....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 38899999999999999999999875322100011345566666543110 0 00 0111
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecC
Q 012655 250 LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSN 322 (459)
Q Consensus 250 ~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn 322 (459)
....++..+...+.....+.+|+||.+..+...... ..++.......+..++..|..+....++.|+.++.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~--~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYP--GRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSC--TTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhc--CcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 122334444444433246789999999988753211 00110011234566666666654444445555543
No 143
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.83 E-value=1.6e-05 Score=79.18 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=47.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccccc----ch--------hhHHHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF----SE--------SGKLVAKLFQKIQEM 261 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~----~e--------~~~~v~~~f~~~~~~ 261 (459)
|+.++|+||||+||||||..++...... +...++++......... +. .......++..+..+
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 8889999999999999999999776421 22334555433221110 00 000122233333332
Q ss_pred HHhcccchhhhhhhhHhHH
Q 012655 262 VEEENNLVFVLIDEVESLA 280 (459)
Q Consensus 262 ~~~~~~~~illIDEid~l~ 280 (459)
. ....+.+|+||++..+.
T Consensus 135 ~-~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 135 V-RSGALDIIVIDSVAALV 152 (349)
T ss_dssp H-TTTCCSEEEEECGGGCC
T ss_pred H-hcCCCCEEEEcChHhhc
Confidence 2 22468899999998876
No 144
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.83 E-value=2.6e-05 Score=78.92 Aligned_cols=128 Identities=20% Similarity=0.310 Sum_probs=66.5
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccc--------cc--------------h-h
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW--------FS--------------E-S 247 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~--------~~--------------e-~ 247 (459)
+..|..++|+||||+|||||++.++-....+........+.++++....+... ++ . .
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 44588999999999999999997764443221111123456777765432110 00 0 0
Q ss_pred hHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCC-CCCCchHHHHHHHHHHHHhhcC-CCCEEEEEecC
Q 012655 248 GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSG-SEPSDSIRVVNALLTQMDKLKS-SPNVIILTTSN 322 (459)
Q Consensus 248 ~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~-~e~~~~~~~~~~ll~~l~~l~~-~~~viIi~Ttn 322 (459)
......+...+...+.. ..+.+|+||++..+.... +++ ++.....+.+..++..|.++.+ .+..+|+++|.
T Consensus 255 ~~~~~~~l~~~~~~l~~-~~~~llVIDs~t~~~~~~---~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSE-SRFSLIVVDSVMALYRTD---FSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHHHH-SCEEEEEEETGGGGCC---------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHh-cCCceEEecchhhhCchh---hcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 11112222333333322 367899999987665421 111 1111113344666777766643 35566666665
No 145
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.81 E-value=1.2e-05 Score=84.42 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.1
Q ss_pred ccCCcEEEEecCCCChHHHHHHH--HHHHh
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKA--LAQKL 218 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLara--lA~~l 218 (459)
+..|..++|.||||||||||++. +++..
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 44589999999999999999999 56665
No 146
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.81 E-value=3.3e-05 Score=76.67 Aligned_cols=129 Identities=18% Similarity=0.271 Sum_probs=67.7
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccc-----cc---c---------------hhhH
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK-----WF---S---------------ESGK 249 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~-----~~---~---------------e~~~ 249 (459)
.|..++|+||||+|||+||..++.....+........+.++++....+.. +. + .+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 38899999999999999999999874322100002345566766543210 00 0 0011
Q ss_pred HHHHHHHHHHHHHHhc-ccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCC
Q 012655 250 LVAKLFQKIQEMVEEE-NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (459)
Q Consensus 250 ~v~~~f~~~~~~~~~~-~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~ 323 (459)
....+...+...+... ..+.+|+||.+..+....... .++.......+..++..|..+....++.||.++..
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG--GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 1223333344444332 467899999998887432100 01100112235666666666554445555555443
No 147
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.80 E-value=2.2e-05 Score=83.60 Aligned_cols=43 Identities=19% Similarity=0.395 Sum_probs=34.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|+.+.|.||+|+|||||++.+++.+. |..+.+.+++.+
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-------p~~G~i~~~g~~ 406 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYD-------VDSGSICLDGHD 406 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCCEEEECCEE
Confidence 5677799999999999999999999999873 344456665543
No 148
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.80 E-value=0.00018 Score=68.50 Aligned_cols=26 Identities=35% Similarity=0.654 Sum_probs=23.3
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
..+++|+||||||||++|++||+.+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 45799999999999999999999753
No 149
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.77 E-value=4.6e-05 Score=72.61 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
.|..++|.||+|+||||+++++++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 4788999999999999999999998753
No 150
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.76 E-value=9e-06 Score=80.29 Aligned_cols=37 Identities=19% Similarity=0.451 Sum_probs=29.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
|..++|.||+|+|||||++++++.+. +..+.+.++..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~-------~~~g~i~i~~~ 207 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP-------KEERIISIEDT 207 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC-------TTSCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-------CCCcEEEECCe
Confidence 56799999999999999999999873 34555666654
No 151
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.76 E-value=7.8e-05 Score=78.44 Aligned_cols=30 Identities=40% Similarity=0.535 Sum_probs=27.0
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..|..+.|.||||+|||||+++|++.+.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456799999999999999999999999874
No 152
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.74 E-value=3.5e-05 Score=81.07 Aligned_cols=30 Identities=33% Similarity=0.366 Sum_probs=26.2
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..|..+.|.||||+|||||+++|++.+..
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 345889999999999999999999998743
No 153
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.74 E-value=7.7e-05 Score=71.48 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=25.1
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..|..++|+||||+|||||++.++..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999998663
No 154
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.74 E-value=1.2e-05 Score=85.52 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=35.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|+.+.|.||+|+|||||++.+++.+ .+..+.+.+++.++
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-------~~~~G~i~i~g~~i 407 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLI-------DPERGRVEVDELDV 407 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSS-------CCSEEEEEESSSBG
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc-------cCCCcEEEECCEEc
Confidence 557779999999999999999999999987 34556677776554
No 155
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.73 E-value=4.8e-06 Score=88.54 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=35.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|+.+.|.||+|+|||||++.+++.+. |..+.+.+++.++
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-------p~~G~i~~~g~~~ 405 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYD-------VTSGQILIDGHNI 405 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSC-------CSEEEEEETTEEG
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCC-------CCCcEEEECCEEh
Confidence 5577799999999999999999999999873 4556677766543
No 156
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.68 E-value=2e-05 Score=83.88 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=35.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|+.+.|.||+|+|||||++.+++.+. |..+.+.+++.++
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-------p~~G~i~~~g~~~ 407 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYD-------IDEGHILMDGHDL 407 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTTC-------CSEEEEEETTEET
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhccC-------CCCCeEEECCEEc
Confidence 5567799999999999999999999999873 4455566666443
No 157
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.67 E-value=5.7e-05 Score=79.43 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=27.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4466799999999999999999999999874
No 158
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.67 E-value=0.00013 Score=77.68 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=27.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+.+..|..+.|.||+|+|||||+++|++.+..
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 33567899999999999999999999998753
No 159
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.66 E-value=2.4e-05 Score=71.04 Aligned_cols=34 Identities=41% Similarity=0.557 Sum_probs=27.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+.+..++.|+|+||+||||||+++.|++.++.++
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 4455578899999999999999999999997654
No 160
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.65 E-value=2.1e-05 Score=70.59 Aligned_cols=28 Identities=39% Similarity=0.583 Sum_probs=24.8
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+..|..++|.||||+||||+++.|++..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4458889999999999999999999874
No 161
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.65 E-value=4e-05 Score=73.12 Aligned_cols=29 Identities=38% Similarity=0.654 Sum_probs=26.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+. |..+.|.||+|+|||||+++|++.+
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6678 8999999999999999999999876
No 162
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.64 E-value=9.9e-05 Score=77.67 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+.+..|..+.|.||+|+|||||+++|++.+..
T Consensus 307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34567899999999999999999999998753
No 163
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.63 E-value=2.6e-05 Score=74.35 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=35.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..+.|.||+|+|||||+++|++.+. |..+.+.+++.++
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-------p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEK-------PSEGAIIVNGQNI 70 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC-------CSEEEEEETTEEC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCcEEEECCEEc
Confidence 5567799999999999999999999999873 4556676766543
No 164
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.62 E-value=9.8e-05 Score=82.23 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.2
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHH
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~ 217 (459)
..|+.++|.||||+||||++|.++..
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999543
No 165
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.62 E-value=0.00011 Score=81.49 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.4
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHH
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~ 217 (459)
+..|+.++|.||||+||||++|.++..
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 345788999999999999999999864
No 166
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.61 E-value=0.00011 Score=79.55 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=23.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALA 215 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA 215 (459)
+.+..|..+.|.||+|+|||||++++.
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 567789999999999999999997654
No 167
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.61 E-value=0.00013 Score=77.88 Aligned_cols=30 Identities=43% Similarity=0.547 Sum_probs=27.1
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..|..+.|.||||+|||||+++|++.+.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 466799999999999999999999999874
No 168
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.61 E-value=2.8e-05 Score=73.15 Aligned_cols=43 Identities=30% Similarity=0.357 Sum_probs=33.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||+++|++.+. |..+.+.+++.+
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-------p~~G~i~~~g~~ 69 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-------AQKGKIIFNGQD 69 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCceEEECCEE
Confidence 5567789999999999999999999999873 344556565543
No 169
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.60 E-value=2.7e-05 Score=72.03 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=34.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||++++++.+ .+..+.+.+++.+
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~-------~p~~G~I~~~g~~ 72 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYL-------KPLKGEIIYNGVP 72 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSS-------CCSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC-------CCCCeEEEECCEE
Confidence 556678899999999999999999999987 3445556666544
No 170
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.60 E-value=9.2e-05 Score=87.64 Aligned_cols=127 Identities=14% Similarity=0.230 Sum_probs=81.8
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccccc----c--------hhhHHHHHHHHHH
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF----S--------ESGKLVAKLFQKI 258 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~----~--------e~~~~v~~~f~~~ 258 (459)
+..+..++|.|+||+|||+||..+|..+... +..+++++.......+. + .....+..++..+
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~------g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~ 802 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 802 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc------CCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHH
Confidence 3457899999999999999999999987532 23457777765544331 1 1112355666666
Q ss_pred HHHHHhcccchhhhhhhhHhHHH-hhhhccCCCCC-CchHHHHHHHHHHHHhhcCCCCEEEEEecCCC
Q 012655 259 QEMVEEENNLVFVLIDEVESLAA-ARKAALSGSEP-SDSIRVVNALLTQMDKLKSSPNVIILTTSNIT 324 (459)
Q Consensus 259 ~~~~~~~~~~~illIDEid~l~~-~r~~~ls~~e~-~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~ 324 (459)
+.+... ..+++|+||.+..+.. .....-.+.-. ....+.++.++..|..+.+..++.||+++...
T Consensus 803 r~l~~~-~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~ 869 (2050)
T 3cmu_A 803 DALARS-GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 869 (2050)
T ss_dssp HHHHHH-TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred HHHhhc-cCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecccc
Confidence 554332 4689999999998865 22111111111 23456688888888888777777777765543
No 171
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.57 E-value=0.0001 Score=68.52 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
.|..++|+||||+|||+++..++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48889999999999999988887654
No 172
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.57 E-value=8.8e-05 Score=74.16 Aligned_cols=123 Identities=15% Similarity=0.235 Sum_probs=64.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccccc----ch--------hhHHHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF----SE--------SGKLVAKLFQKIQEM 261 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~----~e--------~~~~v~~~f~~~~~~ 261 (459)
+..++|+||||+|||+||..++...... +..+++++...-...+. +. .......++..+..+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 7889999999999999999998876321 12345555443222110 00 000122333333333
Q ss_pred HHhcccchhhhhhhhHhHHHhhhhccCCCC--CCchHHHHHHHHHHHHhhcCCCCEEEEEecCC
Q 012655 262 VEEENNLVFVLIDEVESLAAARKAALSGSE--PSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (459)
Q Consensus 262 ~~~~~~~~illIDEid~l~~~r~~~ls~~e--~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~ 323 (459)
.. ...+.+|+||.+..+.......-..++ .....+.+..++..|..+....++.||+++..
T Consensus 148 ~~-~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 148 VR-SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp HT-TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred Hh-cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 22 246789999999887632110000000 01122445666666665555555555655443
No 173
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.56 E-value=3.7e-05 Score=74.03 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=34.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..+.|.||+|+|||||+++|++.+. |..+.+.+++.++
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-------p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEP-------ATSGTVNLFGKMP 85 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC-------CSEEEEEETTBCC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-------CCCeEEEECCEEc
Confidence 5566789999999999999999999999873 4455566666443
No 174
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.56 E-value=9.4e-05 Score=79.98 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.1
Q ss_pred ccccCCcEEEEecCCCChHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLC 211 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLa 211 (459)
+.+..|..+.|.||||+|||||+
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHh
Confidence 66778999999999999999997
No 175
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.56 E-value=3.6e-05 Score=72.79 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=34.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||+++|++.+. +..+.+.+++.+
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-------p~~G~I~i~g~~ 72 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-------PENGQVLIDGHD 72 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCcEEEECCEE
Confidence 5567789999999999999999999999873 445556666544
No 176
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.55 E-value=0.0004 Score=62.32 Aligned_cols=28 Identities=32% Similarity=0.743 Sum_probs=25.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..|+|.|+|||||||+++.|++.++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~ 39 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFT 39 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4679999999999999999999998743
No 177
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.55 E-value=3.9e-05 Score=73.52 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=34.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..+.|.||+|+|||||+++|++.+. |..+.+.+++.++
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-------p~~G~I~~~g~~i 83 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-------PTGGKVLLDGEPL 83 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC-------CSEEEEEETTEEG
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCCEEEECCEEc
Confidence 5567789999999999999999999999873 4455566665443
No 178
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.55 E-value=3.5e-05 Score=72.61 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5567799999999999999999999999873
No 179
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.54 E-value=0.00057 Score=63.14 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=27.0
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
...++.|+|.||||+||+|.|+.|++.++.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 3446889999999999999999999999753
No 180
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.54 E-value=4.1e-05 Score=73.14 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=33.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+..|..+.|.||+|+|||||+++|++.+. +..+.+.+++.+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-------p~~G~I~~~g~~ 70 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIE-------PTSGDVLYDGER 70 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-------CCCcEEEECCEE
Confidence 5567799999999999999999999999873 445556665543
No 181
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.53 E-value=4.6e-05 Score=67.50 Aligned_cols=29 Identities=24% Similarity=0.571 Sum_probs=25.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|+|+|+||+||||+++.|++.++.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~ 31 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPW 31 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 46799999999999999999999987544
No 182
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.53 E-value=0.00022 Score=63.67 Aligned_cols=28 Identities=29% Similarity=0.614 Sum_probs=24.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..|+|.|+|||||||+++.|+..++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~ 30 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYT 30 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4679999999999999999999998653
No 183
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.53 E-value=4.9e-05 Score=66.78 Aligned_cols=29 Identities=31% Similarity=0.467 Sum_probs=26.0
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
.+..|..+.|.||+|+|||||+|++++.+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34458899999999999999999999998
No 184
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.51 E-value=4.7e-05 Score=67.08 Aligned_cols=28 Identities=39% Similarity=0.753 Sum_probs=24.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..++|+||+||||||+++.|++.++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~ 31 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNME 31 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4569999999999999999999998743
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.49 E-value=0.00032 Score=63.67 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
.+.|.||+||||||+++.+++ ++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~ 28 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVP 28 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 589999999999999999998 6644
No 186
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.49 E-value=0.00015 Score=72.16 Aligned_cols=81 Identities=16% Similarity=0.251 Sum_probs=46.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccccc----ch--------hhHHHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF----SE--------SGKLVAKLFQKIQEM 261 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~----~e--------~~~~v~~~f~~~~~~ 261 (459)
++.++|+||||+|||+||..++...... +..+++++....+.... +. .......+...+..+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 7889999999999999999999876421 12345555533221100 00 000112222222222
Q ss_pred HHhcccchhhhhhhhHhHHH
Q 012655 262 VEEENNLVFVLIDEVESLAA 281 (459)
Q Consensus 262 ~~~~~~~~illIDEid~l~~ 281 (459)
.. ...+.+|+||.+..+..
T Consensus 137 ~~-~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 137 AR-SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HH-HTCCSEEEEECGGGCCC
T ss_pred Hh-ccCCCEEEEcCHHHhcc
Confidence 22 24678999999988763
No 187
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.49 E-value=5.3e-05 Score=70.73 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=27.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||++++++.+.
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 5567789999999999999999999999873
No 188
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.49 E-value=0.00022 Score=69.75 Aligned_cols=128 Identities=17% Similarity=0.244 Sum_probs=67.0
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcccc------cCCCCc----ceEEEEccccccc-c----cc---c---------
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRF------SSRYPQ----CQLVEVNAHSLFS-K----WF---S--------- 245 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~------~~~~~~----~~~i~i~~~~l~~-~----~~---~--------- 245 (459)
.|..++|+||||+|||++|..++.....+- .....+ ..+++++...-+. . +. +
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcC
Confidence 378899999999999999999997642210 000111 4566676654321 0 00 0
Q ss_pred ------hhhHHHHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEE
Q 012655 246 ------ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILT 319 (459)
Q Consensus 246 ------e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~ 319 (459)
........++..+...+.....+.+|+||.+..+...... ..++.......+..++..|..+....++.|+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~--~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~ 254 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYT--GRGKLAERQQKLGRHMATLNKLADLFNCVVLV 254 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCC--CTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 0011112233344444433246789999999888643210 00110111234566666666664444555555
Q ss_pred ecC
Q 012655 320 TSN 322 (459)
Q Consensus 320 Ttn 322 (459)
++.
T Consensus 255 ~nq 257 (322)
T 2i1q_A 255 TNQ 257 (322)
T ss_dssp EEC
T ss_pred ECc
Confidence 543
No 189
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.49 E-value=6e-05 Score=75.12 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=24.2
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..++|.||+||||||+++++++.+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 457999999999999999999998854
No 190
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.47 E-value=9e-05 Score=67.29 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=24.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..++|.|||||||||+++.|++.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 678999999999999999999998853
No 191
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.46 E-value=0.00086 Score=60.62 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
.|.|.|++||||||+++.|++ ++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~ 27 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAY 27 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCE
Confidence 489999999999999999999 7643
No 192
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.45 E-value=0.00013 Score=70.91 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=33.2
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
.+..|..+.|.||+|+||||+++.||+.+.. ..+-+.+.+.+.
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-------~~g~V~l~g~d~ 138 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-------EGTKVLMAAGDT 138 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-------TTCCEEEECCCC
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeecc
Confidence 4567889999999999999999999999853 223355666554
No 193
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.45 E-value=7.1e-05 Score=66.75 Aligned_cols=29 Identities=31% Similarity=0.277 Sum_probs=25.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
++.|+|+||+||||||+++.||+.++.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~ 33 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRIL 33 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45799999999999999999999997655
No 194
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.44 E-value=0.00016 Score=74.73 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=27.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..++|.||+|+|||||++.|++.+.
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 4567789999999999999999999999885
No 195
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.43 E-value=0.00095 Score=69.40 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=49.5
Q ss_pred hhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh-cCCCCEEEEEecCCC-CcccHHHhccCCeEEEeCCCCH
Q 012655 269 VFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL-KSSPNVIILTTSNIT-AAIDIAFVDRADIKAYVGPPTL 346 (459)
Q Consensus 269 ~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l-~~~~~viIi~Ttn~~-~~ld~al~~R~~~~i~~~~P~~ 346 (459)
.+++|||+..+.... ...+..++..+-+. +..+-.+|++|+... +.++..++..+...+.+...+.
T Consensus 299 ivlvIDE~~~ll~~~------------~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 299 IVVLVDEFADLMMTV------------GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp EEEEEETHHHHHHHH------------HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSH
T ss_pred EEEEEeCHHHHHhhh------------hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCH
Confidence 378999998776521 11223333333332 333556666666655 4688889999999999999999
Q ss_pred HHHHHHHHH
Q 012655 347 QARYEILRS 355 (459)
Q Consensus 347 ~~r~~Il~~ 355 (459)
.+...|+..
T Consensus 367 ~dsr~ilg~ 375 (512)
T 2ius_A 367 IDSRTILDQ 375 (512)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHhcCC
Confidence 888877754
No 196
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.43 E-value=4.6e-05 Score=71.52 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=28.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5567799999999999999999999999874
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.40 E-value=0.00013 Score=64.54 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=24.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..++|.||||+||||+++.+++.++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 678999999999999999999998864
No 198
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.40 E-value=0.00046 Score=69.80 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.4
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..| .+.|+||||+|||||+++|+..++
T Consensus 56 l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 56 LELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 344557 899999999999999999988775
No 199
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.39 E-value=0.0026 Score=66.77 Aligned_cols=74 Identities=11% Similarity=0.161 Sum_probs=48.7
Q ss_pred hhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCC--cccHHHhccCCeEEEeCCCCH
Q 012655 269 VFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITA--AIDIAFVDRADIKAYVGPPTL 346 (459)
Q Consensus 269 ~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~--~ld~al~~R~~~~i~~~~P~~ 346 (459)
.+|+|||+..+..... ..+.. .+..+-+.-+.-.+.+|.+|.++. .++..+++.|...+.+...+.
T Consensus 345 ivvVIDE~~~L~~~~~-----------~~~~~-~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~ 412 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----------KKVEE-LIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEESCCTTHHHHTC-----------HHHHH-HHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCH
T ss_pred EEEEEeCHHHHhhhhh-----------HHHHH-HHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCH
Confidence 5899999988865320 12222 333333333334455555556665 789999999999999999998
Q ss_pred HHHHHHHH
Q 012655 347 QARYEILR 354 (459)
Q Consensus 347 ~~r~~Il~ 354 (459)
.+...|+.
T Consensus 413 ~Dsr~ILd 420 (574)
T 2iut_A 413 IDSRTILD 420 (574)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88777764
No 200
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.37 E-value=0.00024 Score=69.60 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=25.3
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..++|+||+||||||+++.||+.++..+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~i 33 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCEL 33 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 35799999999999999999999987543
No 201
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.37 E-value=9.5e-05 Score=64.79 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=24.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.|+|.||+||||||+++.|++.++.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~ 29 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPI 29 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 589999999999999999999997654
No 202
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.37 E-value=0.0001 Score=66.77 Aligned_cols=27 Identities=37% Similarity=0.669 Sum_probs=24.5
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..|..+.|.||+|+||||+++.|++.+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 347889999999999999999999986
No 203
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.36 E-value=0.00054 Score=75.20 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
.|+.++|.||||+||||++|.+++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 46789999999999999999999864
No 204
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00036 Score=74.28 Aligned_cols=27 Identities=44% Similarity=0.616 Sum_probs=24.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
|..+.|.||+|+|||||+++|++.+..
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 367999999999999999999998743
No 205
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.35 E-value=0.0001 Score=67.27 Aligned_cols=30 Identities=27% Similarity=0.638 Sum_probs=25.2
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..|+.+.|.||+|+|||||+++|++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 455689999999999999999999999873
No 206
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.34 E-value=2.3e-05 Score=60.91 Aligned_cols=46 Identities=17% Similarity=-0.013 Sum_probs=40.0
Q ss_pred HHHHHHHccCCChHHHhchHHHH--HHhhcCCCCCCHHHHHHHHHHHH
Q 012655 405 LLEAAEACEGLSGRSLRKLPFLA--HAALANPNGCDPSKFLLTVIDTA 450 (459)
Q Consensus 405 L~~la~~~~G~Sgr~L~~L~~~a--~a~~~~~~~it~~d~~~Al~~~~ 450 (459)
+..+|+.|+||||.||..++..| .+...+...++.+||..|+.+..
T Consensus 22 l~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 22 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp STTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 55788899999999999999998 66666778899999999998774
No 207
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.34 E-value=0.0002 Score=71.32 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=33.3
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
.+..|..+.|.||+|+||||+++.||+.+.. ..+-+.+.+.++
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-------~~G~V~l~g~D~ 195 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-------EGTKVLMAAGDT 195 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-------TTCCEEEECCCC
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccc-------cCCEEEEecccc
Confidence 4567889999999999999999999999853 223356666554
No 208
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.33 E-value=0.0014 Score=64.94 Aligned_cols=130 Identities=15% Similarity=0.234 Sum_probs=69.3
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc---cc---cc-----------cc---chh-h
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS---LF---SK-----------WF---SES-G 248 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~---l~---~~-----------~~---~e~-~ 248 (459)
.+..|..+.|.||+|+|||||++.|++... ++.+.+.+.+.. .. .. +. +.. .
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-------~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~ 139 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGAS-------ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPAL 139 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSC-------CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHH
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHH
Confidence 455588999999999999999999999974 334445444322 10 00 00 000 1
Q ss_pred HHHHHHHH--HHHHHHHhcccchhhhhhhhHhHHHhhh-hccCCCC----CCchHHHHHHHHHHHHhhcC--CCC-----
Q 012655 249 KLVAKLFQ--KIQEMVEEENNLVFVLIDEVESLAAARK-AALSGSE----PSDSIRVVNALLTQMDKLKS--SPN----- 314 (459)
Q Consensus 249 ~~v~~~f~--~~~~~~~~~~~~~illIDEid~l~~~r~-~~ls~~e----~~~~~~~~~~ll~~l~~l~~--~~~----- 314 (459)
..+...+. ...+.+.......++++|.+.++..... -++.-++ ...+......+...+.++.. .+.
T Consensus 140 ~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~ 219 (347)
T 2obl_A 140 ERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIY 219 (347)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEE
Confidence 11111111 1111112222334566677776654321 1111122 24557778888888888763 355
Q ss_pred EEEEEecCCCCc
Q 012655 315 VIILTTSNITAA 326 (459)
Q Consensus 315 viIi~Ttn~~~~ 326 (459)
++++.||+..+.
T Consensus 220 tVl~~thdl~~~ 231 (347)
T 2obl_A 220 TVLLESDNVNDP 231 (347)
T ss_dssp EEECCSSCCCCH
T ss_pred EEEEeCCCCCCh
Confidence 566666665533
No 209
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.32 E-value=0.00011 Score=69.98 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=27.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 556678999999999999999999999876
No 210
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.32 E-value=0.00014 Score=65.10 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=25.9
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHH-hcccc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQK-LSIRF 222 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~-l~~~~ 222 (459)
.+..|+|+|++||||||+++.|+.. ++.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~ 39 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQH 39 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4677999999999999999999998 66543
No 211
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.31 E-value=0.00013 Score=65.32 Aligned_cols=28 Identities=39% Similarity=0.686 Sum_probs=25.2
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..|+|.|+||+||||+++.|+..++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLP 32 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 5779999999999999999999988643
No 212
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.31 E-value=0.00013 Score=84.68 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=35.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (459)
+.+.+|+.+.|+||+|||||||++.|.+.+ .+..+.+.+++.+
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~-------~~~~G~I~idG~~ 481 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYY-------DVLKGKITIDGVD 481 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSS-------CCSEEEEEETTEE
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhcccc-------ccccCcccCCCcc
Confidence 557779999999999999999999999987 3556667777654
No 213
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.30 E-value=0.00019 Score=69.88 Aligned_cols=123 Identities=16% Similarity=0.256 Sum_probs=61.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccccccc----cch--------hhHHHHHH-HHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW----FSE--------SGKLVAKL-FQKIQE 260 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~----~~e--------~~~~v~~~-f~~~~~ 260 (459)
| .++|+||||+||||||-.++...... .++...++++...-+... ++- .......+ +..+..
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~~----g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMRQ----YPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHHH----CTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHhc----CCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 6 68999999999999988877665322 123445667665432110 000 00012222 222222
Q ss_pred HH-HhcccchhhhhhhhHhHHHhh--hhccCCCCCC--chHHHHHHHHHHHHhhcCCCCEEEEEec
Q 012655 261 MV-EEENNLVFVLIDEVESLAAAR--KAALSGSEPS--DSIRVVNALLTQMDKLKSSPNVIILTTS 321 (459)
Q Consensus 261 ~~-~~~~~~~illIDEid~l~~~r--~~~ls~~e~~--~~~~~~~~ll~~l~~l~~~~~viIi~Tt 321 (459)
+. .....+.+|+||-|..+.... .+.+...... ...+.+++.+..|..+.+..++.+|.|.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 10 123478999999998886321 1111111111 3345666666665555444555555543
No 214
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.30 E-value=0.00014 Score=64.61 Aligned_cols=29 Identities=45% Similarity=0.721 Sum_probs=25.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|+|+|+||+||||+++.+++.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 56799999999999999999999987543
No 215
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.29 E-value=0.00012 Score=64.80 Aligned_cols=27 Identities=37% Similarity=0.661 Sum_probs=24.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.|+|.|||||||||+++.||+.++.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~ 32 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVF 32 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 489999999999999999999997644
No 216
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.29 E-value=0.00012 Score=65.14 Aligned_cols=28 Identities=39% Similarity=0.755 Sum_probs=24.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
|..|+|.|+|||||||+++.|++.++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~ 31 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFK 31 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 5679999999999999999999988643
No 217
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.28 E-value=0.00012 Score=67.61 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=24.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..|+.+.|.||+|+|||||++.|++.+
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 556678899999999999999999999976
No 218
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.26 E-value=0.0019 Score=60.28 Aligned_cols=28 Identities=43% Similarity=0.764 Sum_probs=24.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..+.|.||+||||||+++.|++.++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~ 36 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGAR 36 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3569999999999999999999998753
No 219
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.26 E-value=0.00034 Score=66.06 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=24.7
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..++|.|||||||||+++.|++.++
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999999985
No 220
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.26 E-value=0.00014 Score=84.47 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=35.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+.+|..+.|+||+|+|||||++.|.+.+ .|..+.|.+++.++
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-------~p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLERFY-------DTLGGEIFIDGSEI 1143 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTTSS-------CCSSSEEEETTEET
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCc-------cCCCCEEEECCEEh
Confidence 457789999999999999999999999877 34555677776543
No 221
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.25 E-value=0.00014 Score=65.90 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=24.7
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+..|..+.|.||+||||||+++.|++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3457889999999999999999999987
No 222
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.25 E-value=6.9e-05 Score=67.46 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=20.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+..++++||+|+||||++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999986666554
No 223
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.24 E-value=0.00017 Score=65.42 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=24.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
|..+.|.||+||||||+++.|++.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999985
No 224
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.24 E-value=0.00094 Score=75.20 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
|+.++|+||||+||||++|.+ +.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 578999999999999999999 654
No 225
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.23 E-value=0.00017 Score=64.37 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=23.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..|+|.|+|||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999886
No 226
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.22 E-value=7.5e-05 Score=86.40 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=32.6
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
+.+..|..+.|.||+|+|||||++.|++... |..+.+.+++.
T Consensus 1054 l~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~-------p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYD-------PMAGSVFLDGK 1095 (1284)
T ss_dssp EEECSSSEEEEECSSSTTHHHHHHHHTTSSC-------CSEEEEESSSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-------CCCCEEEECCE
Confidence 4567789999999999999999999999773 33444555543
No 227
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.22 E-value=0.00011 Score=71.20 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=28.2
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5677899999999999999999999999874
No 228
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.21 E-value=0.00027 Score=82.69 Aligned_cols=84 Identities=15% Similarity=0.256 Sum_probs=52.8
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccccccc----c--------hhhHHHHHHHHHH
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF----S--------ESGKLVAKLFQKI 258 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~----~--------e~~~~v~~~f~~~ 258 (459)
+..+..++|+||||+|||+||..+|..+... +..+++++......... + .....+..++..+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~------g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l 802 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 802 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHH
Confidence 4558899999999999999999999887531 12345555443321110 0 0011234555555
Q ss_pred HHHHHhcccchhhhhhhhHhHHH
Q 012655 259 QEMVEEENNLVFVLIDEVESLAA 281 (459)
Q Consensus 259 ~~~~~~~~~~~illIDEid~l~~ 281 (459)
+.+... ..+.+|+||.+..+..
T Consensus 803 ~~lv~~-~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 803 DALARS-GAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HHHHHH-TCCSEEEESCSTTCCC
T ss_pred HHHHHc-cCCCEEEEechhhhcc
Confidence 544332 4689999999998763
No 229
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.19 E-value=0.00017 Score=64.18 Aligned_cols=28 Identities=32% Similarity=0.627 Sum_probs=24.9
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
..|+|.|+|||||||+++.|+..++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGL 30 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 3499999999999999999999998654
No 230
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.19 E-value=0.0002 Score=64.13 Aligned_cols=29 Identities=31% Similarity=0.684 Sum_probs=25.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|+|.|+|||||||+++.|++.++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~ 37 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTH 37 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 56799999999999999999999987543
No 231
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.19 E-value=0.00018 Score=65.17 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..|+|.|++|+||||+++.|++.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~ 45 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYP 45 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCE
Confidence 3569999999999999999999998643
No 232
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.18 E-value=0.00022 Score=62.61 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=25.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
..|+|.|++||||||+++.||..++.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~ 35 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEV 35 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4699999999999999999999998665
No 233
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.18 E-value=0.00016 Score=83.71 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=36.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|..+.|.||+|+|||||++.|++.+ .+..+.+.+++.++
T Consensus 411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g~~-------~~~~G~i~i~g~~i 454 (1284)
T 3g5u_A 411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLY-------DPLDGMVSIDGQDI 454 (1284)
T ss_dssp EEECTTCEEEEECCSSSSHHHHHHHTTTSS-------CCSEEEEEETTEEG
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC-------CCCCeEEEECCEEH
Confidence 567779999999999999999999999887 34566677776543
No 234
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.18 E-value=0.00023 Score=64.38 Aligned_cols=29 Identities=48% Similarity=0.676 Sum_probs=25.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|+|.|+|||||||+++.|+..++.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~ 48 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQ 48 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 45799999999999999999999987543
No 235
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.16 E-value=0.00049 Score=66.39 Aligned_cols=26 Identities=42% Similarity=0.616 Sum_probs=23.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..++|.|||||||||+++.++..++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999999873
No 236
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.16 E-value=0.00019 Score=63.27 Aligned_cols=25 Identities=28% Similarity=0.596 Sum_probs=22.1
Q ss_pred cEEEEecCCCChHHHHHHHHHH-Hhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQ-KLS 219 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~-~l~ 219 (459)
..|+|.|+|||||||+++.|++ .++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 5699999999999999999998 444
No 237
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.16 E-value=0.00022 Score=66.90 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=26.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+.+..+..+.|.||+|+||||+++.|++.++..
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 445567889999999999999999999988643
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.16 E-value=0.00023 Score=63.44 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
|+.+.|.||+|+|||||++.|++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999864
No 239
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.15 E-value=0.00025 Score=67.08 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=24.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.++|.|||||||||+++.||+.++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~ 29 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPV 29 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeE
Confidence 589999999999999999999987543
No 240
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.14 E-value=0.0002 Score=64.13 Aligned_cols=25 Identities=40% Similarity=0.727 Sum_probs=23.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+.|.||+|+||||+++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5689999999999999999999875
No 241
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.13 E-value=0.00031 Score=65.22 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..++++||+|+||||++..++..+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67799999999999999888887763
No 242
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.13 E-value=0.00018 Score=63.88 Aligned_cols=29 Identities=34% Similarity=0.623 Sum_probs=21.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|+|.|+|||||||+++.|++.++.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~ 33 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSF 33 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 46799999999999999999999987654
No 243
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.13 E-value=0.00061 Score=74.40 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=23.3
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
|+.++|.||||+||||++|.+++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 7889999999999999999999875
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.11 E-value=0.00024 Score=64.83 Aligned_cols=27 Identities=44% Similarity=0.731 Sum_probs=24.9
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.|..+.|.||+|+|||||++.|++.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 377899999999999999999999985
No 245
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.11 E-value=0.00064 Score=62.28 Aligned_cols=26 Identities=38% Similarity=0.703 Sum_probs=23.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
.|+|.||||+||+|.|+.|++.++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 37899999999999999999999753
No 246
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.11 E-value=0.00026 Score=66.39 Aligned_cols=27 Identities=33% Similarity=0.783 Sum_probs=24.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..++|.||||+||||+++.|++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999988864
No 247
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.11 E-value=0.00025 Score=68.96 Aligned_cols=29 Identities=34% Similarity=0.611 Sum_probs=26.2
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
.+..|..+.|+||+|+|||||++.|++.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45558999999999999999999999987
No 248
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.10 E-value=0.00025 Score=62.27 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=24.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
..|+|.|++||||||+++.|+..++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEF 30 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 3599999999999999999999987544
No 249
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.10 E-value=0.00029 Score=64.79 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=24.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..|+|.|+|||||||+++.|++.++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 4569999999999999999999998753
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.10 E-value=0.00025 Score=64.80 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=24.5
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.|+.+.|.||+|+||||+++.|++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 367899999999999999999999874
No 251
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.10 E-value=0.00026 Score=61.75 Aligned_cols=25 Identities=32% Similarity=0.739 Sum_probs=22.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
.|+|.|||||||||+++.| ..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 5899999999999999999 777654
No 252
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.09 E-value=0.0002 Score=67.78 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=26.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|.|.|++||||||+++.||+.++.++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~ 76 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTF 76 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcE
Confidence 56699999999999999999999998654
No 253
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.09 E-value=0.00018 Score=66.86 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=21.0
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHH-HHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALA-QKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA-~~l 218 (459)
+.+..|..+.|.||+|+||||+++.|+ +.+
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 566778999999999999999999999 876
No 254
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00025 Score=64.40 Aligned_cols=26 Identities=50% Similarity=0.718 Sum_probs=23.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
|+.+.|.||+|+|||||++.|++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 67799999999999999999999764
No 255
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.08 E-value=0.00027 Score=65.36 Aligned_cols=28 Identities=18% Similarity=0.497 Sum_probs=25.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..|+|.|+|||||||+++.|++.++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELK 34 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 4679999999999999999999998753
No 256
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.08 E-value=0.00031 Score=69.47 Aligned_cols=27 Identities=33% Similarity=0.753 Sum_probs=25.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.++|+||+|+||||++++||+.++.+|
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 499999999999999999999998776
No 257
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.07 E-value=0.00031 Score=64.61 Aligned_cols=29 Identities=38% Similarity=0.822 Sum_probs=25.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|.|.||+||||||+++.|++.++.++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~ 33 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHL 33 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 35699999999999999999999987543
No 258
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.07 E-value=0.00032 Score=62.48 Aligned_cols=28 Identities=25% Similarity=0.612 Sum_probs=24.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..|+|.|++||||||+++.|++.++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 33 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWV 33 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4679999999999999999999998743
No 259
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.06 E-value=0.00027 Score=63.28 Aligned_cols=25 Identities=40% Similarity=0.918 Sum_probs=22.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
|..++|.||||+||||+++.|++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc
Confidence 4568999999999999999999754
No 260
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.05 E-value=0.00029 Score=64.87 Aligned_cols=28 Identities=25% Similarity=0.574 Sum_probs=24.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..|+|.|||||||||+++.|++.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4569999999999999999999998743
No 261
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.05 E-value=0.0004 Score=62.79 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=24.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
...|+|.|++||||||+++.|++.++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~ 42 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFV 42 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 4679999999999999999999998653
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.05 E-value=0.00032 Score=63.92 Aligned_cols=26 Identities=35% Similarity=0.531 Sum_probs=24.3
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..+.|.||+|||||||++.|++.++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 67799999999999999999999986
No 263
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.04 E-value=0.00036 Score=61.89 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=23.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
|..+.|.|++||||||+++.+++.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6779999999999999999999987
No 264
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.02 E-value=0.00051 Score=65.12 Aligned_cols=25 Identities=40% Similarity=0.720 Sum_probs=22.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+..|+|.|+|||||||+++.|+..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999999984
No 265
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.01 E-value=0.00035 Score=63.50 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=25.0
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
..++.++|.||+|+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4477899999999999999999999874
No 266
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.01 E-value=0.00038 Score=64.43 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=25.0
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
..|+.+.|.||+|+|||||+++|++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3488899999999999999999999875
No 267
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.00 E-value=0.00075 Score=74.26 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=25.8
Q ss_pred ccccCCcEEEEecCCCChHHHHHHH-HHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKA-LAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLara-lA~~l 218 (459)
+.+..|..+.|.|++|+|||||++. +++.+
T Consensus 518 l~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 518 VRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp EEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred EEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 5577899999999999999999996 66554
No 268
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.0004 Score=62.93 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=24.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..|+|.|+|||||||+++.|++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 467999999999999999999999864
No 269
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.00 E-value=0.00037 Score=69.87 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=25.8
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..++.++|+||||+|||||++++++.++
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44588999999999999999999999764
No 270
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.99 E-value=0.00033 Score=62.37 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=22.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.|+|.|+|||||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999986
No 271
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.98 E-value=0.00045 Score=65.22 Aligned_cols=29 Identities=45% Similarity=0.885 Sum_probs=25.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|.|.||+||||||+++.|++.++..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 56799999999999999999999987543
No 272
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.97 E-value=0.0012 Score=69.77 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=35.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHH
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~ 217 (459)
..++|.+.....|.+.+... + . ..+.++|+||+|+|||+||+.++..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~------~-~-----~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL------K-G-----EPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS------T-T-----SCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CeecccHHHHHHHHHHHhcc------c-C-----CCceEEEEcCCCCCHHHHHHHHHhc
Confidence 45788888887777765321 0 1 1467999999999999999999764
No 273
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.96 E-value=0.00054 Score=66.65 Aligned_cols=40 Identities=28% Similarity=0.252 Sum_probs=31.4
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
.+..+.|.||+|+||||+++.+|+.+.. ..+-+.+.+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-------~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-------LGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-------TTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-------cCCEEEEEeecC
Confidence 4688999999999999999999999853 233466666554
No 274
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.96 E-value=0.00047 Score=64.06 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=25.3
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|+|.|+|||||||+++.|+..++..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~ 44 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCH 44 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 45699999999999999999999987543
No 275
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.96 E-value=0.00045 Score=60.31 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=24.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.|+|.|++||||||+++.|+..++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~ 28 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPF 28 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 489999999999999999999987544
No 276
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.95 E-value=0.0015 Score=68.39 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=26.2
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..|..++|.||||+|||||++.+++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344589999999999999999999999864
No 277
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.95 E-value=0.00043 Score=63.34 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=22.9
Q ss_pred EEEecCCCChHHHHHHHHHHHhccc
Q 012655 197 VLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
|+|.|||||||||+++.|++.++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 8899999999999999999998754
No 278
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.95 E-value=0.00044 Score=63.21 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=22.9
Q ss_pred EEEecCCCChHHHHHHHHHHHhccc
Q 012655 197 VLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
|+|.|||||||||+++.|++.++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 8899999999999999999998754
No 279
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.95 E-value=0.00044 Score=63.52 Aligned_cols=29 Identities=24% Similarity=0.623 Sum_probs=25.2
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|+|.|+|||||||+++.|+..++.++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~ 33 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAH 33 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceE
Confidence 35699999999999999999999997543
No 280
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.95 E-value=0.00043 Score=62.86 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=26.3
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.+..|+|.|++||||||+++.|++.++.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 367899999999999999999999987543
No 281
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.95 E-value=0.0021 Score=64.19 Aligned_cols=130 Identities=21% Similarity=0.321 Sum_probs=67.2
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccc---------------ccccccchh-hHH--H
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS---------------LFSKWFSES-GKL--V 251 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~---------------l~~~~~~e~-~~~--v 251 (459)
.+..|..++|.||+|+|||+|++.|++.+.... ++..++.+-... ++.....+. ... +
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~----~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~ 245 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH----PDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQV 245 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHC----TTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHHhhcC----CCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHH
Confidence 355688899999999999999999998775321 222223221110 000011111 111 1
Q ss_pred H-HHHHHHHHHHHhcccchhhhhhhhHhHHHhhh-hccCCCC-C--CchHHHHHHHHHHHHhh---cCCCCEEEEEecCC
Q 012655 252 A-KLFQKIQEMVEEENNLVFVLIDEVESLAAARK-AALSGSE-P--SDSIRVVNALLTQMDKL---KSSPNVIILTTSNI 323 (459)
Q Consensus 252 ~-~~f~~~~~~~~~~~~~~illIDEid~l~~~r~-~~ls~~e-~--~~~~~~~~~ll~~l~~l---~~~~~viIi~Ttn~ 323 (459)
. .....++. +.+....+++++|++.+++.... -++..++ + +....+...+-..+.+. ...+.+.+|.|.-.
T Consensus 246 a~~alt~AEy-frd~G~dVLil~DslTR~A~A~revs~~~Ge~ps~Gyp~~~~~~~~rl~erA~~~~~~GSIT~i~tvlv 324 (422)
T 3ice_A 246 AEMVIEKAKR-LVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALI 324 (422)
T ss_dssp HHHHHHHHHH-HHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBCSSSCBHHHHHHHHHHHTTCEEESSSCEEEEEEEECC
T ss_pred HHHHHHHHHH-HHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCCCCCcCHHHHhhhHHHHHhccccCCCcceeEEEEEEe
Confidence 1 22223333 33446778999999999876542 2222222 2 23344444444444432 23455666666554
Q ss_pred C
Q 012655 324 T 324 (459)
Q Consensus 324 ~ 324 (459)
+
T Consensus 325 ~ 325 (422)
T 3ice_A 325 D 325 (422)
T ss_dssp S
T ss_pred c
Confidence 3
No 282
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.94 E-value=0.0021 Score=71.32 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHHHhccCCeEEEeC
Q 012655 295 SIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVG 342 (459)
Q Consensus 295 ~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~al~~R~~~~i~~~ 342 (459)
+......++..|+++...++.+|+.+||. + ++..+|+++.++
T Consensus 840 D~~~~~~L~~lL~~L~~~G~TVIvI~HdL----~--~i~~ADrIivLg 881 (916)
T 3pih_A 840 HFEDVRKLVEVLHRLVDRGNTVIVIEHNL----D--VIKNADHIIDLG 881 (916)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECCCH----H--HHTTCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCH----H--HHHhCCEEEEec
Confidence 35556667777777766788999999985 2 234477777774
No 283
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.94 E-value=0.00049 Score=64.54 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..|+|.|||||||||+++.|++.++.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~ 56 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYC 56 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4669999999999999999999998753
No 284
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.93 E-value=0.0013 Score=67.65 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=25.4
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..|..++|.|+||+|||+|+..++..+.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34488999999999999999999998764
No 285
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.93 E-value=0.00028 Score=64.78 Aligned_cols=24 Identities=50% Similarity=0.632 Sum_probs=22.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~ 217 (459)
|..+.|.||+|+|||||++++++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 678999999999999999999998
No 286
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.90 E-value=0.00051 Score=61.78 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=24.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.|.|.|++||||||+++.|++.++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~ 28 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEI 28 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcE
Confidence 489999999999999999999997543
No 287
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.90 E-value=0.00048 Score=62.19 Aligned_cols=25 Identities=48% Similarity=0.812 Sum_probs=22.8
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
..+.|.||+|+|||||++.+++.+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4589999999999999999999873
No 288
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.89 E-value=0.00058 Score=61.59 Aligned_cols=29 Identities=17% Similarity=0.480 Sum_probs=25.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh-cccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL-SIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l-~~~~ 222 (459)
+..|.|.|++||||||+++.|++.+ +.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~ 33 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTI 33 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCce
Confidence 5679999999999999999999988 3433
No 289
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.89 E-value=0.0017 Score=63.00 Aligned_cols=27 Identities=33% Similarity=0.632 Sum_probs=24.2
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..++|.||+|+|||+|+..+|+.++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCC
Confidence 467899999999999999999999864
No 290
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.88 E-value=0.0028 Score=61.79 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
|..++|.|+||+|||+++..+|....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999997654
No 291
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.87 E-value=0.0012 Score=64.92 Aligned_cols=41 Identities=24% Similarity=0.235 Sum_probs=31.2
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
..|..+.|.||+|+||||+++.||+.+.. ..+-+.+.+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~-------~~g~V~l~g~D~ 167 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN-------HGFSVVIAASDT 167 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-------cCCEEEEEeecc
Confidence 34789999999999999999999998853 223355555554
No 292
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.85 E-value=0.00072 Score=60.29 Aligned_cols=28 Identities=39% Similarity=0.571 Sum_probs=25.1
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
.+..++|.|++|+||||+++.++..++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999999853
No 293
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.85 E-value=0.00043 Score=69.02 Aligned_cols=37 Identities=32% Similarity=0.613 Sum_probs=29.4
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
.|..++|.||+|+|||||++++++.+. +..+.+.++.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~-------~~~g~I~ie~ 210 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP-------FDQRLITIED 210 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC-------TTSCEEEEES
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC-------CCceEEEECC
Confidence 367799999999999999999999874 3445566654
No 294
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.84 E-value=0.00064 Score=66.37 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=26.7
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..|..+.|.||+|+|||||++.|++.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 455889999999999999999999999853
No 295
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.84 E-value=0.00059 Score=62.02 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|+|.|++||||||+++.|++.++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 56799999999999999999999986543
No 296
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.83 E-value=0.0046 Score=55.88 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=66.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEE-ccc------ccccc-----------ccch------hhHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV-NAH------SLFSK-----------WFSE------SGKL 250 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i-~~~------~l~~~-----------~~~e------~~~~ 250 (459)
..|++|+++|.||||+|-.+|-..--.- ....++.+ .+. .++.. |... ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G----~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG----KNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT----CCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 3589999999999999999887752110 00111111 110 01111 1111 1123
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhhcCCCCEEEEEecCCCCcccHH
Q 012655 251 VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIA 330 (459)
Q Consensus 251 v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l~~~~~viIi~Ttn~~~~ld~a 330 (459)
....+..+.+.+. .....+|+|||+-....-.. . -...++..+.. +..+.-||.|.|. .++.
T Consensus 105 a~~~l~~a~~~l~-~~~yDlvILDEi~~al~~g~---------l---~~~ev~~~l~~--Rp~~~~vIlTGr~---ap~~ 166 (196)
T 1g5t_A 105 CMAVWQHGKRMLA-DPLLDMVVLDELTYMVAYDY---------L---PLEEVISALNA--RPGHQTVIITGRG---CHRD 166 (196)
T ss_dssp HHHHHHHHHHHTT-CTTCSEEEEETHHHHHHTTS---------S---CHHHHHHHHHT--SCTTCEEEEECSS---CCHH
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEeCCCccccCCC---------C---CHHHHHHHHHh--CcCCCEEEEECCC---CcHH
Confidence 4455555555432 24578999999876544220 0 12345555553 3344445555554 3557
Q ss_pred HhccCCeEEEeCC
Q 012655 331 FVDRADIKAYVGP 343 (459)
Q Consensus 331 l~~R~~~~i~~~~ 343 (459)
++...|.+-++..
T Consensus 167 l~e~AD~VTem~~ 179 (196)
T 1g5t_A 167 ILDLADTVSELRP 179 (196)
T ss_dssp HHHHCSEEEECCC
T ss_pred HHHhCcceeeecc
Confidence 7777777776643
No 297
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.82 E-value=0.0005 Score=62.45 Aligned_cols=29 Identities=34% Similarity=0.389 Sum_probs=25.4
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
.+..+..+.|.|++|+||||+++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34557789999999999999999999987
No 298
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.81 E-value=0.00032 Score=74.32 Aligned_cols=26 Identities=46% Similarity=0.742 Sum_probs=23.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
++.++|.|||||||||++++++..+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999999998774
No 299
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.80 E-value=0.007 Score=57.96 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=22.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..|.|.|++||||||+++.|+ .++.+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~ 101 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAY 101 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCc
Confidence 4569999999999999999999 56543
No 300
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.80 E-value=0.00073 Score=61.70 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=24.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..++|.|++|+||||+++.|++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 67799999999999999999999885
No 301
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.78 E-value=0.00079 Score=61.18 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=24.5
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.|+.+.|.||+|+|||||++.|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 478899999999999999999998864
No 302
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.78 E-value=0.0019 Score=62.82 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=23.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..++|.||+|+|||+|+..||+.++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 356899999999999999999998853
No 303
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.75 E-value=0.00082 Score=64.73 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=25.8
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..|..++|.||||+|||||++.++..+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 33488999999999999999999999874
No 304
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.75 E-value=0.00073 Score=61.80 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.9
Q ss_pred EEEecCCCChHHHHHHHHHHHhccc
Q 012655 197 VLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
|+|.|+|||||||+++.|+..++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 8999999999999999999988654
No 305
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.74 E-value=0.0014 Score=61.70 Aligned_cols=45 Identities=27% Similarity=0.439 Sum_probs=31.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcccccc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (459)
..|.|.|++||||||+++.|+..++.++.. .....++.++..++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d-~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhccc-ccCCceEEEecCccc
Confidence 569999999999999999999999865311 111223455665554
No 306
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.74 E-value=0.0045 Score=56.72 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
..|.|+|..||||||+++.++. ++.++
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~v 36 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASL 36 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcE
Confidence 3599999999999999999998 77654
No 307
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.73 E-value=0.00082 Score=62.07 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
.|+|.|+|||||||+++.|+..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3899999999999999999999864
No 308
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.71 E-value=0.00058 Score=72.69 Aligned_cols=44 Identities=20% Similarity=0.460 Sum_probs=35.3
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+..|+.+.|.||+|+|||||++.+++.+ .|..+.+.+++.++
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-------~p~~G~i~~~g~~i 408 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLRLY-------DPASGTISLDGHDI 408 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTTSS-------CCSEEEEEETTEET
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc-------CCCCcEEEECCEEh
Confidence 567779999999999999999999999987 34555666666443
No 309
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.71 E-value=0.00063 Score=70.96 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=29.3
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
|.+++|.||+||||||+++++++.+. +..+.+.+...
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~-------~~~giitied~ 296 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP-------PDAKVVSIEDT 296 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC-------TTCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC-------CCCCEEEEcCc
Confidence 56699999999999999999999873 34555666544
No 310
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.68 E-value=0.00098 Score=59.39 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
.|.|.|++||||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999988
No 311
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.68 E-value=0.0015 Score=66.78 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=32.6
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccc
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (459)
.+..|..+.|.||+|||||||++.|++... ++.+.+.+.+.
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-------~~~G~i~~~G~ 193 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTR-------ADVIVVGLIGE 193 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSC-------CSEEEEEEESC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccC-------CCeEEEEEece
Confidence 455588999999999999999999999974 34455666554
No 312
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.67 E-value=0.0011 Score=59.87 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=24.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
..|.|+|++||||||+++.++..++.++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~v 40 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHV 40 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 5689999999999999999999887544
No 313
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.66 E-value=0.001 Score=59.57 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
.|.|.|++||||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999998
No 314
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.65 E-value=0.0076 Score=55.94 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=24.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.+.|.||||+||||+|+.|++.++.++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~ 36 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQ 36 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCe
Confidence 478999999999999999999997644
No 315
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.64 E-value=0.001 Score=60.01 Aligned_cols=27 Identities=33% Similarity=0.730 Sum_probs=24.5
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
.|.|.|++||||||+++.|++.++.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~ 30 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPY 30 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCce
Confidence 689999999999999999999997654
No 316
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.64 E-value=0.0021 Score=65.82 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.|..++|.|+||+|||++|..+|....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999998764
No 317
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.62 E-value=0.0012 Score=59.93 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..+.|.||+|+||||+++.+++.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 67899999999999999999999874
No 318
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.62 E-value=0.0012 Score=58.56 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=22.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
..+|+||+|+||||++++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 789999999999999999999874
No 319
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.62 E-value=0.0012 Score=65.81 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=28.8
Q ss_pred CccccC--CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 188 PFLVSW--NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 188 ~~~i~~--~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
++.+.. +..+.|.||+|||||||++.|++.+..
T Consensus 162 ~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 162 PKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456666 888999999999999999999999854
No 320
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.61 E-value=0.0013 Score=61.26 Aligned_cols=29 Identities=21% Similarity=0.583 Sum_probs=25.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|.|.|++||||||+++.|++.++.++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~ 44 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTY 44 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCce
Confidence 56799999999999999999999987543
No 321
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.61 E-value=0.0087 Score=62.85 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=32.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHH
Q 012655 162 IYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 162 i~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~ 216 (459)
+|.+..++.|.+.+... .+-+ .+.|.|+|+.|+||||||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~-----~~~~------~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-----CDLD------SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-----TTSS------SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-----cCCC------ceEEEEEcCCCCCHHHHHHHHHH
Confidence 37777777777776321 1111 36799999999999999999997
No 322
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.60 E-value=0.0087 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=18.1
Q ss_pred CcEEEEecCCCChHHHH-HHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSL-CKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtL-aralA~~l 218 (459)
++.+++.+|+|+|||.. +..+...+
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 35599999999999986 33344443
No 323
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.57 E-value=0.0052 Score=68.10 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=23.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALA 215 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA 215 (459)
+.+..|..+.|.|++|+|||||++.+.
T Consensus 645 l~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 645 VKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 567779999999999999999999853
No 324
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.55 E-value=0.0055 Score=68.15 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=23.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALA 215 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA 215 (459)
+.+..|..+.|.|++|+|||||++.+.
T Consensus 663 l~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 663 VSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 456778999999999999999999853
No 325
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.54 E-value=0.0095 Score=55.17 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=19.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~ 216 (459)
|+.+++.||+|||||+++..+.-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 67899999999999987766543
No 326
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.53 E-value=0.0033 Score=64.00 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=24.8
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
.+..+++.||+|+||||++..||..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999998853
No 327
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.52 E-value=0.0011 Score=68.42 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=26.1
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.+.. ..+.|.||+|+|||||+++|++.+.
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEcc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 44555 7899999999999999999999884
No 328
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.51 E-value=0.0014 Score=65.57 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=25.1
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
.+..++|.||+|+||||+++++++.+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3778999999999999999999998753
No 329
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.51 E-value=0.0015 Score=59.78 Aligned_cols=27 Identities=41% Similarity=0.632 Sum_probs=23.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
+..|.|.|++||||||+++.|+. ++.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~ 30 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGIN 30 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCE
Confidence 45799999999999999999998 6643
No 330
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.51 E-value=0.0029 Score=64.80 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
.|..++|+||+|+|||+|++.++.....
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 3677999999999999999999887654
No 331
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.51 E-value=0.0013 Score=59.06 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=24.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|.|.|++||||||+++.|++. +.++
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~ 35 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPV 35 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEE
Confidence 456999999999999999999997 6443
No 332
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.50 E-value=0.0016 Score=60.52 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=25.0
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.|..|.|.||+|+||||+++.|++.++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999999985
No 333
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.50 E-value=0.0013 Score=62.73 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=22.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999999999999999999874
No 334
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.50 E-value=0.0014 Score=64.29 Aligned_cols=28 Identities=32% Similarity=0.643 Sum_probs=24.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
++.|+|.||+|+|||+|+..||+.++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~e 67 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLE 67 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCc
Confidence 4579999999999999999999998643
No 335
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.50 E-value=0.0014 Score=58.92 Aligned_cols=25 Identities=40% Similarity=0.727 Sum_probs=22.2
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
|.|+|.||+|+|||||++.|.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4499999999999999999988764
No 336
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.001 Score=68.52 Aligned_cols=28 Identities=32% Similarity=0.287 Sum_probs=25.0
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+..|..+.|.||+|||||||+|.|++..
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3347889999999999999999999986
No 337
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.48 E-value=0.012 Score=59.94 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=24.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..+++.|++|+||||++..||..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998875
No 338
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.48 E-value=0.0074 Score=61.54 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=60.5
Q ss_pred chhhhhhhhHhHHHhhhhccCCCCCCchHHHHHHHHHHHHhh--------cCCCCEEEEEec-----CCCCcccHHHhcc
Q 012655 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--------KSSPNVIILTTS-----NITAAIDIAFVDR 334 (459)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l~~l--------~~~~~viIi~Tt-----n~~~~ld~al~~R 334 (459)
..++++||+|++...... ++++ -....++++||..++.- .+..++++|+|. |.. .+-+.|++|
T Consensus 251 ~~il~~DEidki~~~~~~--~~~D-~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~-dlipel~~R 326 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEY--SGAD-VSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS-DLIPELQGR 326 (444)
T ss_dssp HCEEEEETGGGGSCCSSC--SSSH-HHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG-GSCHHHHTT
T ss_pred CCeeeHHHHHHHhhccCC--CCCC-chHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh-hcchHHhcc
Confidence 368999999999764321 1111 11134778999999863 134678888886 444 455889999
Q ss_pred CCeEEEeCCCCHHHHHHHHH
Q 012655 335 ADIKAYVGPPTLQARYEILR 354 (459)
Q Consensus 335 ~~~~i~~~~P~~~~r~~Il~ 354 (459)
|..++.++.++.++..+|+.
T Consensus 327 ~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 327 LPIRVELTALSAADFERILT 346 (444)
T ss_dssp CCEEEECCCCCHHHHHHHHH
T ss_pred cceeeeCCCCCHHHHHHHHH
Confidence 99999999999999999983
No 339
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.47 E-value=0.0015 Score=63.48 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.6
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..+.|.||+|+|||||++.|++.++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999999875
No 340
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.44 E-value=0.0023 Score=65.04 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=23.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..++|.||+|+||||+++++++.+.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 56799999999999999999999985
No 341
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.43 E-value=0.0049 Score=61.94 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=23.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
..|+|.||+|+|||+|+..||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC
Confidence 46899999999999999999999863
No 342
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.43 E-value=0.0036 Score=61.21 Aligned_cols=30 Identities=30% Similarity=0.321 Sum_probs=26.7
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
....++.+++.||+|+||||++..||..+.
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455678999999999999999999999885
No 343
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.40 E-value=0.0025 Score=57.62 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.9
Q ss_pred CcEEEEecCCCChHH-HHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKT-SLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKT-tLaralA~~l 218 (459)
++..+++||.|+||| .|++++.+..
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~ 45 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQ 45 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 678999999999999 7888887765
No 344
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.36 E-value=0.0049 Score=55.58 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
++..+++||.|+||||.+-.++..+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 6789999999999999888888776
No 345
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.34 E-value=0.0021 Score=63.38 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=26.0
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..+..+.|.||||+|||||++++++.+.
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 344578899999999999999999998873
No 346
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.28 E-value=0.013 Score=62.35 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=21.0
Q ss_pred EEEecCCCChHHHHHHHHHHHh
Q 012655 197 VLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l 218 (459)
+.|.||+|+|||||+++|++..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 9999999999999999999975
No 347
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.25 E-value=0.0023 Score=61.49 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=21.9
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..|+|.|+|||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 569999999999999999999864
No 348
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.25 E-value=0.0024 Score=58.34 Aligned_cols=28 Identities=32% Similarity=0.624 Sum_probs=24.8
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
..|.|.|++||||||+++.+++.++.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~ 31 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIY 31 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCce
Confidence 4599999999999999999999987544
No 349
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.24 E-value=0.0047 Score=70.67 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=35.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 159 ~~li~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..++|.+...++|.+.+... . . ..+.+.|+|+.|+|||+||+.++...
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~----~---~-----~~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL----N---G-----EPGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT----T---T-----SCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred ceeccHHHHHHHHHHHHhhc----c---C-----CCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 35788888888887765321 1 1 14679999999999999999988763
No 350
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.21 E-value=0.003 Score=61.42 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=25.8
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
...++.++|.||+|+||||+++.+|..+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 34578899999999999999999999885
No 351
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.20 E-value=0.0071 Score=58.27 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=24.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..|.|.||+||||||+++.|++.++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 567999999999999999999999864
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.19 E-value=0.0029 Score=61.93 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..+.|.||+||||||+++.|++.++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999999885
No 353
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.17 E-value=0.0013 Score=59.62 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
.|.|.|++||||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4889999999999999999999853
No 354
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.17 E-value=0.0015 Score=57.99 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=27.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEccccc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (459)
+.+.|.||+|+|||||++.|++.+...- -..+.+.+++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g----~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERG----LRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTT----CCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcC----CceEEEEEcCccc
Confidence 4589999999999999999999985421 0134566666553
No 355
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.15 E-value=0.006 Score=63.39 Aligned_cols=29 Identities=7% Similarity=0.181 Sum_probs=25.4
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..|..++|.|+||+|||+++..+|....
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 44588999999999999999999998774
No 356
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.14 E-value=0.0026 Score=64.59 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=24.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..|+|+|+|||||||+++.++..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 578999999999999999999998864
No 357
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.13 E-value=0.0037 Score=61.47 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.8
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
..|+|.||+|+||||+++.||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCC
Confidence 46899999999999999999999874
No 358
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.07 E-value=0.0025 Score=57.76 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=23.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
++.++|.||+|+|||+|+..+++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 67899999999999999999998864
No 359
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.04 E-value=0.0035 Score=60.60 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=24.7
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.++.++|.||+|+||||++..+|..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999999999885
No 360
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.04 E-value=0.0026 Score=66.84 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=25.4
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
..|..+.|.|++||||||++++|++.++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3478899999999999999999999985
No 361
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.03 E-value=0.029 Score=51.01 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=18.0
Q ss_pred CcEEEEecCCCChHHHH-HHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSL-CKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtL-aralA~~l 218 (459)
++.+++.+|+|+|||.. +-.+...+
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 45599999999999976 33344433
No 362
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.00 E-value=0.0025 Score=71.03 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=33.7
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHhcccccCCCCcceEEEEcc
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (459)
+.+..|..+.|.||+|+|||||++.|++.+ .+..+.+.++.
T Consensus 694 l~I~~GeivaIiGpNGSGKSTLLklLaGll-------~P~sG~I~~~~ 734 (986)
T 2iw3_A 694 FQCSLSSRIAVIGPNGAGKSTLINVLTGEL-------LPTSGEVYTHE 734 (986)
T ss_dssp EEEETTCEEEECSCCCHHHHHHHHHHTTSS-------CCSEEEEEECT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC-------CCCceEEEEcC
Confidence 567779999999999999999999999987 34556666653
No 363
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.00 E-value=0.019 Score=64.21 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=31.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCCccccCCcEEEEecCCCChHHHHHHHHHHH
Q 012655 162 IYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 162 i~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~ 217 (459)
+|.+.....|.+.+.. . +. .+.+.|+||.|.||||||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~-----~---d~-----~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE-----L---RP-----AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH-----C---CS-----SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc-----c---CC-----CeEEEEEcCCCccHHHHHHHHHHh
Confidence 6666666666665432 0 11 367999999999999999999864
No 364
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.94 E-value=0.0028 Score=64.31 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=23.8
Q ss_pred ccCCcE--EEEecCCCChHHHHHHHHHHHh
Q 012655 191 VSWNRI--VLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 191 i~~~~~--vLL~GPpGtGKTtLaralA~~l 218 (459)
+..|.. +.|.||||+|||||+++|++..
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 344777 9999999999999999999873
No 365
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.91 E-value=0.013 Score=59.96 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.|..++|.|+||+|||+++..+|....
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 388999999999999999999988764
No 366
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.88 E-value=0.0093 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=19.8
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 449999999999999887776643
No 367
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.84 E-value=0.0028 Score=58.73 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.0
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHH
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~ 217 (459)
...|..+.|.||+|+||||+++.|++.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345788999999999999999999986
No 368
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.81 E-value=0.047 Score=54.48 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=25.1
Q ss_pred ccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..|..++|.||+|+|||+|+..|++...
T Consensus 172 igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 172 IGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp CBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 44578899999999999999999998764
No 369
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.79 E-value=0.0055 Score=55.66 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=26.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
..|.|.|++||||||+++.||+.++.++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~ 34 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPL 34 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence 4699999999999999999999999876
No 370
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.79 E-value=0.0017 Score=60.35 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEecCCCChHHHHHHHHHHHhc
Q 012655 197 VLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.|.||+|||||||+++|++.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 56799999999999999999984
No 371
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.78 E-value=0.0061 Score=52.54 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=21.4
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
...+|+||+|+|||+++.+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999999998766
No 372
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.73 E-value=0.0022 Score=57.88 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=24.5
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHHHh
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.+..+..+.|.|++|+|||||++++++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445557789999999999999999998654
No 373
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.67 E-value=0.0062 Score=56.74 Aligned_cols=25 Identities=32% Similarity=0.390 Sum_probs=21.4
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+.++++||+|+|||.++..++..++
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 3489999999999999988887763
No 374
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.65 E-value=0.0069 Score=53.76 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=22.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
..+.|.||+|+|||||++.+.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4689999999999999999998864
No 375
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.61 E-value=0.0056 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
-.+.|.|++|+|||||++.+++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999865
No 376
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.61 E-value=0.0064 Score=54.43 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
.++|.|++|+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 377
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.61 E-value=0.0064 Score=53.80 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=22.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~ 217 (459)
+++++|.|++|+||||+|..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 789999999999999999999874
No 378
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.59 E-value=0.0077 Score=53.19 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
..+.|.|++|+||||++..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4589999999999999999999875
No 379
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.58 E-value=0.0056 Score=68.21 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=24.9
Q ss_pred ccccCCcEEEEecCCCChHHHHHHHHHH
Q 012655 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~ 216 (459)
+.+..|..+.|.||||+|||||+++|++
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4466788999999999999999999995
No 380
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.54 E-value=0.008 Score=55.15 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=24.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
|..|.|.|++|+||||+++.|++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 677999999999999999999999863
No 381
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.53 E-value=0.0077 Score=55.66 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHH
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~ 217 (459)
.|..++|.|+||+|||++|..+|..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3788999999999999999887654
No 382
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.53 E-value=0.0073 Score=56.14 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..|.|.|++|+||||+++.|++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999999983
No 383
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.51 E-value=0.0036 Score=61.24 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=18.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
+.+++.+|+|+|||..+-..+-.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 56999999999999876554433
No 384
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.50 E-value=0.016 Score=52.03 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.4
Q ss_pred CcEEEEecCCCChHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCK 212 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLar 212 (459)
++.+++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3559999999999997543
No 385
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.48 E-value=0.0073 Score=56.04 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=22.2
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (459)
|..|.|.||+|+||||+++.|++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 6779999999999999999999998643
No 386
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.46 E-value=0.0045 Score=59.88 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..+.|.||+|+|||||+++|++...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccc
Confidence 467899999999999999999998764
No 387
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.46 E-value=0.059 Score=49.79 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=15.1
Q ss_pred CcEEEEecCCCChHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLC 211 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (459)
++.+++.+|+|+|||..+
T Consensus 66 g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp TCCEEEEECTTSCHHHHH
T ss_pred CCCEEEECCCcCHHHHHH
Confidence 345999999999999864
No 388
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.44 E-value=0.0046 Score=59.54 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=20.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..|.|.||+||||||+++.++..++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45699999999999999999999876
No 389
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.43 E-value=0.066 Score=51.53 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.3
Q ss_pred CcEEEEecCCCChHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLC 211 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (459)
++.+++++|+|||||...
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 366999999999999753
No 390
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.43 E-value=0.012 Score=63.13 Aligned_cols=24 Identities=38% Similarity=0.796 Sum_probs=17.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
...||+||||||||+++-.+...+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999997655444433
No 391
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.41 E-value=0.01 Score=65.04 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=20.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+..+++.||+|+|||+++..+....
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999877775543
No 392
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.38 E-value=0.033 Score=51.50 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=15.2
Q ss_pred CcEEEEecCCCChHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLC 211 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (459)
++.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 455999999999999853
No 393
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.36 E-value=0.0086 Score=62.53 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.2
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|+|+|.||+||||+++.|+..++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 45799999999999999999999986543
No 394
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.36 E-value=0.0047 Score=62.54 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.8
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..+.|.||||+|||||+++|++..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999999965
No 395
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.33 E-value=0.012 Score=62.71 Aligned_cols=29 Identities=38% Similarity=0.494 Sum_probs=25.5
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh---cccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL---SIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l---~~~~ 222 (459)
+..|+|.|++||||||+++.|++.+ +.++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~ 83 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 83 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 5679999999999999999999998 5444
No 396
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.32 E-value=0.01 Score=54.50 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=24.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
|..|.|.|++|+||||+++.+++.++.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 678999999999999999999999964
No 397
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.31 E-value=0.04 Score=49.95 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=17.2
Q ss_pred cEEEEecCCCChHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~ 216 (459)
+.+++.+|+|+|||..+-..+-
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHH
Confidence 4599999999999986554443
No 398
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.29 E-value=0.072 Score=49.63 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.4
Q ss_pred CcEEEEecCCCChHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLC 211 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (459)
++.+++.+|+|+|||..+
T Consensus 80 ~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEcCCCCCchhHh
Confidence 456999999999999864
No 399
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.28 E-value=0.0092 Score=59.39 Aligned_cols=23 Identities=43% Similarity=0.778 Sum_probs=20.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
..+|+||+|+||||+..+|+..+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999998765
No 400
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.28 E-value=0.01 Score=55.36 Aligned_cols=27 Identities=19% Similarity=0.502 Sum_probs=24.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
|..|.|.|++|+||||+++.|++.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 577999999999999999999999864
No 401
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.26 E-value=0.0071 Score=59.99 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=23.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
|..+.|.||||+|||||+++|++...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 57899999999999999999998764
No 402
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.25 E-value=0.015 Score=53.76 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.1
Q ss_pred CcEEEEecCCCChHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLC 211 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (459)
++.+++.+|+|+|||..+
T Consensus 67 ~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp TCCEEECCCSSHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 355999999999999763
No 403
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.25 E-value=0.03 Score=51.12 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.6
Q ss_pred CcEEEEecCCCChHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCK 212 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLar 212 (459)
++.+++.+|+|+|||..+-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4569999999999997543
No 404
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.21 E-value=0.012 Score=53.46 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
...+|+||+|+||||++.+|.-.+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5689999999999999999987774
No 405
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.17 E-value=0.012 Score=54.42 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=26.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|.|.|++||||||+++.||+.++.++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 35689999999999999999999998765
No 406
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.17 E-value=0.02 Score=57.53 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=33.3
Q ss_pred cCCcEEEEecCCCChHHHHHHHHHHHh-----cccccCCCCcceEEEEcc
Q 012655 192 SWNRIVLLHGPPGTGKTSLCKALAQKL-----SIRFSSRYPQCQLVEVNA 236 (459)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l-----~~~~~~~~~~~~~i~i~~ 236 (459)
..+..+.|.|+||+|||||.++|.+.- +.++....++.+.+.+.+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 346779999999999999999999832 234445556666666654
No 407
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.016 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..|++.|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998764
No 408
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.11 E-value=0.013 Score=53.78 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=24.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
|..|.|.|++|+||||.++.+++.+..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 577999999999999999999999854
No 409
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.11 E-value=0.0038 Score=60.63 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=24.1
Q ss_pred cccCCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..|+.+.|.||||+|||||+++|++...
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc
Confidence 345588999999999999999999988763
No 410
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.10 E-value=0.012 Score=59.67 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=24.7
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
.+..++|+||+|+|||+++++++..++.
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3678999999999999999999998753
No 411
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.09 E-value=0.012 Score=58.55 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
.++|+||||+|||+++++++...
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHhc
Confidence 78999999999999999999754
No 412
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.07 E-value=0.014 Score=54.01 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=24.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
|..|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 677999999999999999999998865
No 413
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.05 E-value=0.0057 Score=57.70 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=23.2
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+..|.|.|++|+||||+++.|++.+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5679999999999999999999988
No 414
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.03 E-value=0.032 Score=50.64 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.0
Q ss_pred CcEEEEecCCCChHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLC 211 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (459)
++.+++.+|+|+|||..+
T Consensus 41 ~~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 41 GESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp TCCEEEECCSSHHHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 345999999999999863
No 415
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.03 E-value=0.014 Score=56.18 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=24.9
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.++.+.+.|++|+||||+++.+|..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999999885
No 416
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.03 E-value=0.014 Score=59.91 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=22.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.++|.|++|||||+++.+++..+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999998874
No 417
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.94 E-value=0.013 Score=56.66 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..+.|.||||+|||||+++|+ ...
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 36789999999999999999999 653
No 418
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.92 E-value=0.015 Score=49.40 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
.+++.|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 419
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.91 E-value=0.011 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
..+.|.|++|+|||||++.+++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 420
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.90 E-value=0.048 Score=53.65 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=15.9
Q ss_pred cEEEEecCCCChHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKA 213 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLara 213 (459)
+.+++.+|+|+|||..+-.
T Consensus 45 ~~~lv~a~TGsGKT~~~~~ 63 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSL 63 (395)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5699999999999986543
No 421
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.81 E-value=0.16 Score=46.36 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.2
Q ss_pred CcEEEEecCCCChHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLC 211 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (459)
++.+++.+|+|+|||..+
T Consensus 61 ~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 455999999999999763
No 422
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.77 E-value=0.013 Score=51.12 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=21.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+..|+|.|++|+|||||++++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4569999999999999999998753
No 423
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.77 E-value=0.015 Score=60.41 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=24.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..|+|.|.+||||||++++||+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999973
No 424
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.71 E-value=0.023 Score=53.49 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.0
Q ss_pred cEEEEecCCCChHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCK 212 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLar 212 (459)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 458999999999998643
No 425
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.70 E-value=0.018 Score=49.19 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
.|++.|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 426
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.70 E-value=0.017 Score=59.48 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=25.0
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcccc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (459)
+..|+|+|.||+||||+++.+++.++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 35699999999999999999999986443
No 427
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.70 E-value=0.08 Score=48.54 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=15.6
Q ss_pred CcEEEEecCCCChHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCK 212 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLar 212 (459)
++.+++.+|+|+|||..+-
T Consensus 62 ~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHH
Confidence 4559999999999998543
No 428
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.68 E-value=0.011 Score=52.15 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q 012655 196 IVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~ 217 (459)
.|+|.|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 429
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.67 E-value=0.02 Score=56.40 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.0
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.+..+.|.|+||+||||+++.+++.+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 367799999999999999999998763
No 430
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.63 E-value=0.02 Score=56.51 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+..|.|.|+||+|||||++++++.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999999876
No 431
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.60 E-value=0.02 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
.|++.|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998653
No 432
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.57 E-value=0.017 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.9
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
..++|.|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999874
No 433
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.53 E-value=0.02 Score=51.74 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..|+|.|++|+|||||++.+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 459999999999999999999865
No 434
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.53 E-value=0.02 Score=48.63 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
.|++.|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 435
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.52 E-value=0.021 Score=56.07 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=21.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
...+|+||||+|||+++.+|.-.+.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999876553
No 436
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.49 E-value=0.035 Score=55.21 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.2
Q ss_pred CcEEEEecCCCChHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLC 211 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (459)
++.+++.+|+|+|||..+
T Consensus 77 ~~~~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATF 94 (414)
T ss_dssp TCCEEECCCSCSSSHHHH
T ss_pred CCCEEEECCCCCcccHHH
Confidence 445999999999999864
No 437
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.48 E-value=0.022 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..|++.|++|+|||||++.+.+.-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 359999999999999999998753
No 438
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.46 E-value=0.023 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.|++.|++|+||||++-.+|..+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 489999999999999999998874
No 439
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.45 E-value=0.023 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
.|++.|++|+|||||++.+.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 49999999999999999998764
No 440
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.45 E-value=0.015 Score=56.55 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=21.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..++|.|++|+|||||++.+++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 358999999999999999999874
No 441
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.44 E-value=0.021 Score=60.74 Aligned_cols=26 Identities=42% Similarity=0.644 Sum_probs=22.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
++.+++.|||||||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999988877763
No 442
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.44 E-value=0.024 Score=51.52 Aligned_cols=26 Identities=27% Similarity=0.630 Sum_probs=23.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
++.|.|-|+.||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46799999999999999999999884
No 443
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.44 E-value=0.016 Score=56.51 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=21.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
..+|+||+|+|||+++.+|...+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 78999999999999999999765
No 444
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.44 E-value=0.023 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
.|++.|++|+|||||++.+.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998654
No 445
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.40 E-value=0.041 Score=55.81 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=24.8
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.++.+++.|++|+||||++..+|..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999999985
No 446
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.39 E-value=0.024 Score=49.04 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.5
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
-.|++.|++|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 447
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.36 E-value=0.022 Score=60.12 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..|+|.|++||||||+++.|++.++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999999986
No 448
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.35 E-value=0.025 Score=49.05 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..|++.|++|+|||||++.+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 359999999999999999998753
No 449
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.34 E-value=0.023 Score=60.68 Aligned_cols=24 Identities=42% Similarity=0.776 Sum_probs=20.2
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
...+++||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999888777665
No 450
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.34 E-value=0.021 Score=55.11 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=24.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..+++.|++|+||||++..+|..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 77899999999999999999999885
No 451
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.33 E-value=0.023 Score=48.63 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q 012655 196 IVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~ 217 (459)
.|++.|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 452
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.32 E-value=0.025 Score=48.44 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=21.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
-.|++.|++|+|||||++.+.+.-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 359999999999999999998653
No 453
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.24 E-value=0.027 Score=55.34 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
.|..++|.|+||+|||+|+..+|....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 388899999999999999999998764
No 454
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.24 E-value=0.022 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEecCCCChHHHHHHHHHHH
Q 012655 197 VLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~ 217 (459)
++++|++|||||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 799999999999999999866
No 455
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.23 E-value=0.027 Score=48.76 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.2
Q ss_pred CcEEEEecCCCChHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~ 217 (459)
...|++.|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999764
No 456
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.23 E-value=0.024 Score=48.88 Aligned_cols=22 Identities=55% Similarity=0.750 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q 012655 196 IVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~ 217 (459)
.|+|.|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4999999999999999999764
No 457
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.23 E-value=0.027 Score=48.02 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q 012655 196 IVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~ 217 (459)
.|++.|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 458
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.023 Score=48.63 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q 012655 196 IVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~ 217 (459)
.|++.|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 459
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.20 E-value=0.1 Score=50.05 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=18.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~ 217 (459)
++.+++.+|+|+|||..+-..+-.
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHh
Confidence 355999999999999876555443
No 460
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.19 E-value=0.028 Score=48.03 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q 012655 196 IVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~ 217 (459)
.|++.|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 461
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.18 E-value=0.075 Score=52.59 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=16.3
Q ss_pred CcEEEEecCCCChHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKAL 214 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaral 214 (459)
++.+++.+|+|+|||..+-..
T Consensus 58 ~~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 58 GRDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp TCCEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEECCCCcHHHHHHHHH
Confidence 345999999999999865443
No 462
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.12 E-value=0.027 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
..++|.|++|+|||||+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4599999999999999999998863
No 463
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.12 E-value=0.027 Score=47.99 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEecCCCChHHHHHHHHHHHh
Q 012655 197 VLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l 218 (459)
|++.|++|+|||+|++.+.+.-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998653
No 464
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.11 E-value=0.044 Score=59.20 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=16.7
Q ss_pred CcEEEEecCCCChHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCK 212 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLar 212 (459)
++.+++.||+|+|||+.+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5679999999999999763
No 465
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.10 E-value=0.02 Score=58.30 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=23.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
+..|++.|++|+||||++..||..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999874
No 466
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.07 E-value=0.03 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.7
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
-.|+|.|++|+|||||++.+.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999874
No 467
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.04 E-value=0.027 Score=48.29 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.0
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q 012655 196 IVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~ 216 (459)
.|++.|++|+|||||++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999999974
No 468
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.04 E-value=0.036 Score=47.52 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~ 217 (459)
...|++.|++|+|||||++.+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999764
No 469
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.02 E-value=0.15 Score=51.99 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.6
Q ss_pred CcEEEEecCCCChHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLC 211 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (459)
++.++++||+|+|||..+
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 477999999999999763
No 470
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.00 E-value=0.03 Score=48.94 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 012655 196 IVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (459)
.|++.|++|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998654
No 471
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.99 E-value=0.058 Score=53.70 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=16.0
Q ss_pred CcEEEEecCCCChHHHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLCKA 213 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLara 213 (459)
++.+++.+|+|+|||..+-.
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHH
Confidence 45599999999999976543
No 472
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.99 E-value=0.027 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q 012655 196 IVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~ 217 (459)
.|++.|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 473
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.98 E-value=0.026 Score=48.84 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.4
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
-.|++.|++|+|||||++.+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999999864
No 474
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.97 E-value=0.03 Score=49.37 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
-.|++.|++|+|||||++++.+.-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 459999999999999999998753
No 475
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.97 E-value=0.03 Score=48.42 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.9
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
..|++.|++|+|||||++++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999876
No 476
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.96 E-value=0.025 Score=48.37 Aligned_cols=21 Identities=43% Similarity=0.774 Sum_probs=19.0
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q 012655 196 IVLLHGPPGTGKTSLCKALAQ 216 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~ 216 (459)
.|+|.|++|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 389999999999999999864
No 477
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.96 E-value=0.03 Score=49.46 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
-.|+|.|++|+|||||++.+.+.-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 359999999999999999998753
No 478
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.94 E-value=0.033 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.3
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..|++.|++|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 459999999999999999998754
No 479
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.92 E-value=0.033 Score=48.96 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
-.|++.|++|+|||||++.+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 480
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.91 E-value=0.018 Score=55.70 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q 012655 196 IVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~ 217 (459)
.|.|.||+|+|||||++.|++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999998865
No 481
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.86 E-value=0.029 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
-.|++.|++|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999875
No 482
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.86 E-value=0.035 Score=48.32 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..|++.|++|+|||||++.+.+.-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 459999999999999999998753
No 483
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.86 E-value=0.033 Score=48.35 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
-.|++.|++|+|||||++.+.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999875
No 484
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.84 E-value=0.026 Score=53.44 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.4
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
..|.|.|+||+|||||++++.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999998764
No 485
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.80 E-value=0.031 Score=48.83 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
-.|++.|++|+|||||++.+.+.-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 359999999999999999998653
No 486
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.79 E-value=0.036 Score=55.38 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+.++++.||+|+|||++++.++..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999876
No 487
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.74 E-value=0.035 Score=58.21 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.1
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHhcc
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (459)
+..|+|.|++|+||||+++.|++.++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 467999999999999999999998853
No 488
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.73 E-value=0.13 Score=50.62 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=14.6
Q ss_pred cEEEEecCCCChHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLC 211 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLa 211 (459)
+.+++.+|+|+|||..+
T Consensus 59 ~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCEEECCCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 44999999999999764
No 489
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.72 E-value=0.032 Score=48.29 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
-.|++.|++|+|||||++++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999998754
No 490
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.72 E-value=0.038 Score=48.15 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.7
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
-.|+|.|++|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999865
No 491
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.72 E-value=0.035 Score=48.79 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=21.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhc
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (459)
-.|+|.|++|+|||||++.+.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3599999999999999998887653
No 492
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.71 E-value=0.038 Score=47.85 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.0
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
-.|++.|++|+|||||++.+.+.-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 459999999999999999998753
No 493
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.69 E-value=0.033 Score=49.39 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.6
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
..|++.|++|+|||||++.+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999874
No 494
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.65 E-value=0.037 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.301 Sum_probs=21.2
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
-.|+|.|++|+|||||++.+.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 459999999999999999998753
No 495
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.63 E-value=0.029 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.7
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
..|++.|++|+|||||++.+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999864
No 496
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.59 E-value=0.038 Score=48.70 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (459)
-.|+|.|++|+|||||++.+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999888764
No 497
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.58 E-value=0.042 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q 012655 196 IVLLHGPPGTGKTSLCKALAQK 217 (459)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~ 217 (459)
.|++.|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 498
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.55 E-value=0.039 Score=60.54 Aligned_cols=25 Identities=40% Similarity=0.749 Sum_probs=20.9
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHh
Q 012655 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (459)
+...+++||||||||+++..++..+
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999888777665
No 499
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.54 E-value=0.039 Score=48.61 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.1
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q 012655 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (459)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (459)
-.|+|.|++|+|||||++++.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 359999999999999999998753
No 500
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.52 E-value=0.11 Score=51.42 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.5
Q ss_pred CcEEEEecCCCChHHHHH
Q 012655 194 NRIVLLHGPPGTGKTSLC 211 (459)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (459)
++.+++.+|+|+|||..+
T Consensus 64 ~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCchHHHHH
Confidence 356999999999999864
Done!