Query 012657
Match_columns 459
No_of_seqs 132 out of 168
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 13:42:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bu3_A ALR0975 protein; phytoc 100.0 5.8E-60 2E-64 455.8 14.6 152 6-157 95-253 (254)
2 3k8u_A Putative ABC transporte 92.0 0.46 1.6E-05 40.8 7.6 95 35-155 46-140 (156)
3 3b79_A Toxin secretion ATP-bin 90.7 0.37 1.3E-05 39.4 5.4 82 35-136 36-117 (129)
4 3zua_A CLD, alpha-hemolysin tr 89.2 1 3.4E-05 38.0 7.1 81 35-136 43-123 (142)
5 3bdk_A D-mannonate dehydratase 64.8 23 0.0008 35.7 9.0 95 12-109 21-161 (386)
6 1tz9_A Mannonate dehydratase; 57.6 28 0.00095 33.6 7.8 70 15-87 14-117 (367)
7 1wjn_A Tubulin-folding protein 33.1 1.3E+02 0.0045 23.7 6.9 67 53-119 24-94 (97)
8 2l69_A Rossmann 2X3 fold prote 28.9 1.3E+02 0.0043 26.1 6.4 40 39-82 14-53 (134)
9 3erv_A Putative C39-like pepti 28.8 1.2E+02 0.0041 28.7 6.9 88 37-134 106-211 (236)
10 1q06_A Transcriptional regulat 26.6 48 0.0016 28.3 3.4 38 13-50 33-70 (135)
11 3phx_A RNA-directed RNA polyme 26.0 22 0.00077 32.4 1.3 50 41-103 105-158 (185)
12 2jml_A DNA binding domain/tran 25.6 30 0.001 26.8 1.8 44 7-50 33-77 (81)
13 2j8a_A Histone-lysine N-methyl 23.0 39 0.0013 30.2 2.2 20 137-156 38-57 (136)
14 3gp4_A Transcriptional regulat 21.9 41 0.0014 29.1 2.1 40 9-49 32-71 (142)
15 1c4e_A Protein (gurmarin); swe 21.6 19 0.00066 25.2 -0.0 9 23-31 14-22 (35)
16 3qaj_A Glutamine synthetase; A 20.8 1.1E+02 0.0037 31.5 5.2 61 40-102 169-251 (444)
17 2d3a_A Glutamine synthetase; l 20.3 97 0.0033 30.8 4.7 59 41-101 173-254 (356)
No 1
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=100.00 E-value=5.8e-60 Score=455.84 Aligned_cols=152 Identities=34% Similarity=0.600 Sum_probs=138.5
Q ss_pred CC-CCCcccCccccc-cccccc-----ccCChHHHHHcCCcHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHhcCC
Q 012657 6 KA-RKTLSGRPWRWF-DESMLD-----CCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASE 78 (459)
Q Consensus 6 ~~-~~r~WKGpWRWf-~EsmLd-----CC~ple~Vk~~GITL~ef~cLA~CnGa~Vq~~r~~~~SldeFR~~V~~~~ss~ 78 (459)
.+ |+|.|||||||| +|+||| ||.|++.|+++||||+||+|||+|+|++|++|++++.|+++||+.|+++++++
T Consensus 95 id~P~~~wk~pwr~~Tqe~mld~~~~~~~~~~~~v~~~GiTL~el~~La~c~G~~v~~y~a~~~sl~~fR~~v~~~~~~~ 174 (254)
T 2bu3_A 95 INAPETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQD 174 (254)
T ss_dssp CCC--------CCCCCTTTTTC---CTTTSCHHHHHHHCCCHHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCT
T ss_pred CCCCCccccCceeeechHhHhcccccccccChhhhccCCcCHHHHHHHHHhCCceEEEEECCcCcHHHHHHHHHHHhCCC
Confidence 45 999999999999 789998 99999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecccccccCCCccccccccccCCCCeEEEEecCCCCCCceeeehhHHHHhccccCCCCCceeeEEEEeCCCC
Q 012657 79 DCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGFVLVSRPHR 157 (459)
Q Consensus 79 d~~lIVnY~Rk~LgQtG~GHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM~tiD~~TgrsRGfllIsk~~~ 157 (459)
+++|||||+|++|||+|+||||||||||+++|+|||||||||||||||||+++||+||+++|++||++||||+|++.++
T Consensus 175 ~~~vvvny~R~~l~q~G~GHfSPIggY~~~~D~vLIlDVar~kYpp~WV~~~~L~~Am~~~D~~s~~~RG~~li~~~~~ 253 (254)
T 2bu3_A 175 GNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVSKTQD 253 (254)
T ss_dssp TEEEEEEEEGGGGTCSSSEEEEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHSSEETTTTEECEEEEEEC---
T ss_pred CcEEEEEeEccccCCCCCCceeceeeEcCCCCeEEEEecCccCCCCEeeeHHHHHHHHhcccccCCCcceEEEEecccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998763
No 2
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=92.01 E-value=0.46 Score=40.77 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=65.9
Q ss_pred HcCCcHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHhcCCCcEEEEEecccccccCCCccccccccccCCCCeEEE
Q 012657 35 EKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALI 114 (459)
Q Consensus 35 ~~GITL~ef~cLA~CnGa~Vq~~r~~~~SldeFR~~V~~~~ss~d~~lIVnY~Rk~LgQtG~GHFSPIGGYh~~tD~VLI 114 (459)
+.|+|+.++...|+..|++++.++.+ ++.|+ + ..-.-.+|+...+. .|.|||--|.+++ .+.|+|
T Consensus 46 ~~g~s~~~l~~~a~~~Gl~a~~~~~~---~~~~~--l----~~~~lP~I~~~~~~----g~~~hfvVl~~~~--~~~v~I 110 (156)
T 3k8u_A 46 KQGTTALGIVEAAKKLGFETRSIKAD---MTLFD--Y----NDLTYPFIVHVIKG----KRLQHYYVVYGSQ--NNQLII 110 (156)
T ss_dssp TTBCCHHHHHHHHHHTTEEEEEEECC---GGGGG--C----TTCCSCEEEEEEET----TEEEEEEEEEEEE--TTEEEE
T ss_pred CCCcCHHHHHHHHHHCCCeeEEEEee---hhhhh--H----hcCCCCEEEEEEec----CCCcEEEEEEEEc--CCEEEE
Confidence 47899999999999999999999864 33331 1 12234566654332 1358999998887 468999
Q ss_pred EecCCCCCCceeeehhHHHHhccccCCCCCceeeEEEEeCC
Q 012657 115 LDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGFVLVSRP 155 (459)
Q Consensus 115 LDVARfKYPP~WVpl~~L~eAM~tiD~~TgrsRGfllIsk~ 155 (459)
.|.+.- -.+.+++.+++-+.- .|++++-++
T Consensus 111 ~DP~~g-~~~~~ls~~ef~~~w----------~G~~l~~~p 140 (156)
T 3k8u_A 111 GDPDPS-VKVTRMSKERFQSEW----------TGLAIFLAP 140 (156)
T ss_dssp EECSTT-TEEEEEEHHHHHHHE----------EEEEEEEEE
T ss_pred EcCCCC-cceEEEcHHHHHhhC----------ceEEEEEEc
Confidence 998642 128999999876554 377766543
No 3
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.65 E-value=0.37 Score=39.41 Aligned_cols=82 Identities=16% Similarity=0.109 Sum_probs=60.1
Q ss_pred HcCCcHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHhcCCCcEEEEEecccccccCCCccccccccccCCCCeEEE
Q 012657 35 EKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALI 114 (459)
Q Consensus 35 ~~GITL~ef~cLA~CnGa~Vq~~r~~~~SldeFR~~V~~~~ss~d~~lIVnY~Rk~LgQtG~GHFSPIGGYh~~tD~VLI 114 (459)
.+|+|+..+...|+..|++++.++.+ ++++.+. .-..|+... .|||--|-+++.+...++|
T Consensus 36 ~~g~s~~~l~~~a~~~Gl~~~~~~~~---~~~L~~l--------~lP~I~~~~--------~~h~vVl~~~~~~~~~~~i 96 (129)
T 3b79_A 36 DGKLTPFLLPRAAERAGLVAKENRAE---LEKISSL--------ILPAILVLK--------GGDSCVLNSINMETREAEV 96 (129)
T ss_dssp TTBCCTTTHHHHHHHHTEEEEEEECC---GGGSCGG--------GCSEEEEEG--------GGEEEEEEEEETTTTEEEE
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEECC---HHHCCcC--------CCCEEEEEc--------CCCEEEEEEEcCCCceEEE
Confidence 46999999999999999999998854 4443221 123444442 4799999999976668999
Q ss_pred EecCCCCCCceeeehhHHHHhc
Q 012657 115 LDVARFKYPPHWVPLTLLWEAM 136 (459)
Q Consensus 115 LDVARfKYPP~WVpl~~L~eAM 136 (459)
.|.+. ...+.+++.+++-+.-
T Consensus 97 ~dp~~-~~g~~~~~~~ef~~~w 117 (129)
T 3b79_A 97 TTLES-GMVPISIPLEDLLEQY 117 (129)
T ss_dssp ECTTT-TTSCEEEEHHHHHHHE
T ss_pred EccCC-CCCcEEeeHHHHHhhC
Confidence 99762 3467999999875544
No 4
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=89.18 E-value=1 Score=38.04 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=57.9
Q ss_pred HcCCcHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHhcCCCcEEEEEecccccccCCCccccccccccCCCCeEEE
Q 012657 35 EKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALI 114 (459)
Q Consensus 35 ~~GITL~ef~cLA~CnGa~Vq~~r~~~~SldeFR~~V~~~~ss~d~~lIVnY~Rk~LgQtG~GHFSPIGGYh~~tD~VLI 114 (459)
..|+|+.++...|+..|++++.++. +++++.+. .-..|+.. .++.|| -|.+++.+.+.++|
T Consensus 43 ~~g~s~~~l~~aa~~~Gl~a~~~~~---~~~~L~~l--------~lP~Il~~-------~~g~~~-Vv~~~~~~~~~~~I 103 (142)
T 3zua_A 43 GTGLGLTSWLLAAKSLELKVKQVKK---TIDRLNFI--------SLPALVWR-------EDGRHF-ILTKVSKEANRYLI 103 (142)
T ss_dssp SSCCCHHHHHHHHHTTTEEEEEEEC---CHHHHTTS--------SSSEEECC-------TTSCCE-EEEEEETTTTEEEE
T ss_pred cCCcCHHHHHHHHHHCCCeeEEeec---CHHHHhcC--------CCCEEEEE-------cCCCEE-EEEEEeCCCCEEEE
Confidence 5799999999999999999999985 45555321 23455521 223466 45568877789999
Q ss_pred EecCCCCCCceeeehhHHHHhc
Q 012657 115 LDVARFKYPPHWVPLTLLWEAM 136 (459)
Q Consensus 115 LDVARfKYPP~WVpl~~L~eAM 136 (459)
.|.+.-+ +.+++.+++-+.-
T Consensus 104 ~dP~~g~--~~~~s~~ef~~~w 123 (142)
T 3zua_A 104 FDLEQRN--PRVLEQSEFEALY 123 (142)
T ss_dssp EETTTTE--EEEEEHHHHHHHC
T ss_pred EcCCCCC--cEEecHHHHHhhC
Confidence 9986532 8999999876654
No 5
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=64.83 E-value=23 Score=35.68 Aligned_cols=95 Identities=19% Similarity=0.341 Sum_probs=57.7
Q ss_pred ccCcccccccccccccCChHHHHHc-CCc-------------------HHHHHHHHHHcCCeEEEEec-----C------
Q 012657 12 SGRPWRWFDESMLDCCEPLEKVKEK-GIS-------------------FGKLVCLAHCAGAKVEAFRT-----N------ 60 (459)
Q Consensus 12 WKGpWRWf~EsmLdCC~ple~Vk~~-GIT-------------------L~ef~cLA~CnGa~Vq~~r~-----~------ 60 (459)
=|--||||.+.- -..++.+++- |.+ ..++..+++.+|+.+.+... +
T Consensus 21 m~~~~rW~g~~d---~~~L~~i~q~~G~~gIe~~l~~~~~g~~w~~~~i~~lk~~l~~~GL~i~~i~s~~~~~~i~~~~~ 97 (386)
T 3bdk_A 21 MKMSFRWYGKKD---PVTLEEIKAIPGMQGIVTAVYDVPVGQAWPLENILELKKMVEEAGLEITVIESIPVHEDIKQGKP 97 (386)
T ss_dssp BCCCCBCCCTTC---SSCHHHHHTSTTCCEEEECCCSSCSSSCCCHHHHHHHHHHHHTTTCEEEEEECCCCCHHHHTTCT
T ss_pred hhcEEEecCCCC---HHHHHHHHhcCCCCEEEeCCcccCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccccccCcH
Confidence 466799997622 3588889998 854 34566677889999876532 1
Q ss_pred --CCCHHHHHHHHHHHhcCCCcEEEEEec------cccccc-CCCc----cc--cccccccCCC
Q 012657 61 --QSTIDDFRKYIIRCSASEDCHVISSYH------RGAFKQ-TGTG----HF--SPIGGYHAGR 109 (459)
Q Consensus 61 --~~SldeFR~~V~~~~ss~d~~lIVnY~------Rk~LgQ-tG~G----HF--SPIGGYh~~t 109 (459)
+..++.|++.|..+..-.-..|..||. |..+-- ..+| -| +++++||++.
T Consensus 98 ~r~~~ie~~k~~i~~aa~lGi~~v~~nf~p~~~w~rt~~~~~~~~G~~~~~f~~~~~~~~d~~~ 161 (386)
T 3bdk_A 98 NRDALIENYKTSIRNVGAAGIPVVCYNFMPVFDWTRSDLHHPLPDGSTSLAFLKSDLAGVDPVA 161 (386)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEECCCSSCSCCCSEEEEECTTSCEEEEEEGGGGSSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcCcccccccccccccccCCCccccccchhhhhcccchh
Confidence 124567777777665444445666765 544421 1123 23 5778887654
No 6
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=57.63 E-value=28 Score=33.56 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=44.2
Q ss_pred ccccccc-ccccccCChHHHHHc-CC-------------------cHHHHHHHHHHcCCeEEEEecCCC-----------
Q 012657 15 PWRWFDE-SMLDCCEPLEKVKEK-GI-------------------SFGKLVCLAHCAGAKVEAFRTNQS----------- 62 (459)
Q Consensus 15 pWRWf~E-smLdCC~ple~Vk~~-GI-------------------TL~ef~cLA~CnGa~Vq~~r~~~~----------- 62 (459)
-||||.. +.- ..++.+++. |. .+.++..+++.+|+++..++....
T Consensus 14 ~~~~~g~~~~~---~~L~~i~~~~G~~~ve~~~~~~~~g~~~~~~~~~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~r 90 (367)
T 1tz9_A 14 GFRWYGAAGDA---IPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLALLGIESVAIHDAIKAGTDQR 90 (367)
T ss_dssp CCBCCCTTTCC---SCHHHHTTSTTCCEEEECCSSSCTTCCCCHHHHHHHHHHHHHTTCEEEEECSCCCCHHHHHTCSTH
T ss_pred eeeecCCCCCh---HHHHHHhhcCCCCeEEecCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEEecCCCcHHHhcCCcCH
Confidence 4888876 322 357788888 76 345677788899999987654322
Q ss_pred --CHHHHHHHHHHHhcCCCcEEEEEec
Q 012657 63 --TIDDFRKYIIRCSASEDCHVISSYH 87 (459)
Q Consensus 63 --SldeFR~~V~~~~ss~d~~lIVnY~ 87 (459)
.++.|++.+..+..-.-..+++||.
T Consensus 91 ~~~i~~~~~~i~~a~~lG~~~v~~n~~ 117 (367)
T 1tz9_A 91 DHYIDNYRQTLRNLGKCGISLVCYSFK 117 (367)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2455666666554434445666543
No 7
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.09 E-value=1.3e+02 Score=23.73 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=39.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcCCCcEEEEEecccc---cccCCCccccccccccCCCC-eEEEEecCC
Q 012657 53 KVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGA---FKQTGTGHFSPIGGYHAGRD-MALILDVAR 119 (459)
Q Consensus 53 ~Vq~~r~~~~SldeFR~~V~~~~ss~d~~lIVnY~Rk~---LgQtG~GHFSPIGGYh~~tD-~VLILDVAR 119 (459)
.++.......|+.+|+..|...+.-+-..+-+.|.-.. ....=.-...++|-|+.+.+ .+.|.|.++
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~p 94 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGP 94 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecCC
Confidence 33434445689999999999876533333333333111 11111245569999999774 777777654
No 8
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.94 E-value=1.3e+02 Score=26.14 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 012657 39 SFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASEDCHV 82 (459)
Q Consensus 39 TL~ef~cLA~CnGa~Vq~~r~~~~SldeFR~~V~~~~ss~d~~l 82 (459)
||.+|..+.+-||.+|.+.| |-+++...+.+....-|.-+
T Consensus 14 tlrkfkdiikkngfkvrtvr----spqelkdsieelvkkynati 53 (134)
T 2l69_A 14 TLRKFKDIIKKNGFKVRTVR----SPQELKDSIEELVKKYNATI 53 (134)
T ss_dssp HHHHHHHHHHHTTCEEEEEC----SHHHHHHHHHHHTTCCCCEE
T ss_pred HHHHHHHHHHhcCceEEEec----CHHHHHHHHHHHHHHhCCeE
Confidence 78899999999999999887 56777777777766555443
No 9
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=28.80 E-value=1.2e+02 Score=28.74 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHHHhcCCCcEEEEEe--ccccc------------cc---CCCcc
Q 012657 37 GISFGKLVCLAHCAG-AKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSY--HRGAF------------KQ---TGTGH 98 (459)
Q Consensus 37 GITL~ef~cLA~CnG-a~Vq~~r~~~~SldeFR~~V~~~~ss~d~~lIVnY--~Rk~L------------gQ---tG~GH 98 (459)
||--..+..+|+.++ ..+ +.-...++++..+.|.+ +..|||-. .=+.+ |. +..+|
T Consensus 106 giy~~~i~~~a~~y~~~~~--~dltG~sl~~L~~~I~~-----G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~~~~~~H 178 (236)
T 3erv_A 106 GVYHGPLFQLAKKYLPNKA--VDLTGKSIEELYKSVKA-----GQPVVIITNATFAPLDEDEFTTWETNNGDVSITYNEH 178 (236)
T ss_dssp CCCHHHHHHHHHHHCTTTE--EECTTSCHHHHHHHHHT-----TCCEEEEEETTSSCCCGGGCEEEEETTEEEEECTTEE
T ss_pred eeecHHHHHHHHHHhhcce--eecCCCCHHHHHHHHHC-----CCeEEEEEeCCcccccccccceeecCCCceeeccCCe
Confidence 555667888998885 333 23334688888877753 44555522 11111 11 34689
Q ss_pred ccccccccCCCCeEEEEecCCCCCCceeeehhHHHH
Q 012657 99 FSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWE 134 (459)
Q Consensus 99 FSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~e 134 (459)
|--|=|||. +.|.|.|.+.-+ ...+++.+++-+
T Consensus 179 ~VVl~GYd~--~~vyi~DP~~g~-~~~~vs~~eFe~ 211 (236)
T 3erv_A 179 CVVLIGYDQ--ESVYIRDPLKDS-LDVKVPREKFEQ 211 (236)
T ss_dssp EEEEEEECS--SEEEEECTTSCC-SCCEEEHHHHHH
T ss_pred EEEEEEEeC--CEEEEECCCCCC-ccEEEcHHHHHH
Confidence 999999997 699999987633 347888766433
No 10
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=26.58 E-value=48 Score=28.27 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=29.4
Q ss_pred cCcccccccccccccCChHHHHHcCCcHHHHHHHHHHc
Q 012657 13 GRPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCA 50 (459)
Q Consensus 13 KGpWRWf~EsmLdCC~ple~Vk~~GITL~ef~cLA~Cn 50 (459)
.|.+|.|+++-+..=.-+-..++.|+|++++..+....
T Consensus 33 ~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~ 70 (135)
T 1q06_A 33 ENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNLF 70 (135)
T ss_dssp TTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhh
Confidence 68899999977664444455678999999999988653
No 11
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=26.04 E-value=22 Score=32.42 Aligned_cols=50 Identities=18% Similarity=0.105 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCCC----HHHHHHHHHHHhcCCCcEEEEEecccccccCCCccccccc
Q 012657 41 GKLVCLAHCAGAKVEAFRTNQST----IDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIG 103 (459)
Q Consensus 41 ~ef~cLA~CnGa~Vq~~r~~~~S----ldeFR~~V~~~~ss~d~~lIVnY~Rk~LgQtG~GHFSPIG 103 (459)
-|+..||+..+..+.+|..+..+ +..| .....+..+.+.| .|++||++|-
T Consensus 105 iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f------~~~~~~~~I~L~Y-------~g~~HYdsl~ 158 (185)
T 3phx_A 105 LEASMLAKEMGITIIIWTVAASDEVEAGIKF------GDGDVFTAVNLLH-------SGQTHFDALR 158 (185)
T ss_dssp HHHHHHHHHHCCCEEEEEC--CCBCCEEEEE------SSCCTTTSEEEEE-------ETTTEEEEEE
T ss_pred HHHHHHHHHHCCcEEEEEecCCCCceEEEEc------CCCCCCCEEEEEE-------CCCcCchhce
Confidence 47889999999999998765433 2222 1112245677788 4679998773
No 12
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=25.62 E-value=30 Score=26.75 Aligned_cols=44 Identities=11% Similarity=0.293 Sum_probs=32.1
Q ss_pred CCCCcccCcccccccccccccCChHHHH-HcCCcHHHHHHHHHHc
Q 012657 7 ARKTLSGRPWRWFDESMLDCCEPLEKVK-EKGISFGKLVCLAHCA 50 (459)
Q Consensus 7 ~~~r~WKGpWRWf~EsmLdCC~ple~Vk-~~GITL~ef~cLA~Cn 50 (459)
.|.|.-.|..|.|+++-+.--.-+-..+ +.|++++++..+....
T Consensus 33 ~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~ 77 (81)
T 2jml_A 33 RPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTE 77 (81)
T ss_dssp CCBSSSCSSSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHS
T ss_pred CCcCCCCCCeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHcc
Confidence 4555433779999997766545556677 8999999999887654
No 13
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=23.04 E-value=39 Score=30.20 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=16.3
Q ss_pred cccCCCCCceeeEEEEeCCC
Q 012657 137 DRVDDATGQRRGFVLVSRPH 156 (459)
Q Consensus 137 ~tiD~~TgrsRGfllIsk~~ 156 (459)
...|+.||+||||-.|.-.+
T Consensus 38 li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 38 AFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp EEECTTTCCEEEEEEEECC-
T ss_pred EEecCCCCceeeEEEEEECC
Confidence 34689999999999999664
No 14
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.95 E-value=41 Score=29.11 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=31.9
Q ss_pred CCcccCcccccccccccccCChHHHHHcCCcHHHHHHHHHH
Q 012657 9 KTLSGRPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 49 (459)
Q Consensus 9 ~r~WKGpWRWf~EsmLdCC~ple~Vk~~GITL~ef~cLA~C 49 (459)
.|. .+..|.|+++-+..-.-+-..++.|+|++++..+...
T Consensus 32 ~r~-~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 32 HRN-ESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp CBC-TTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCC-CCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444 7889999997777655666778899999999988764
No 15
>1c4e_A Protein (gurmarin); sweet taste suppression, cystine knot, sweet taste transduction, plant protein; HET: PCA; NMR {Gymnema sylvestre} SCOP: g.3.4.1 PDB: 1gur_A*
Probab=21.63 E-value=19 Score=25.21 Aligned_cols=9 Identities=89% Similarity=1.859 Sum_probs=7.7
Q ss_pred cccccCChH
Q 012657 23 MLDCCEPLE 31 (459)
Q Consensus 23 mLdCC~ple 31 (459)
-||||+|+|
T Consensus 14 yldcceple 22 (35)
T 1c4e_A 14 YLDCCEPLE 22 (35)
T ss_dssp TCCCSSSCC
T ss_pred hhcccChhh
Confidence 479999987
No 16
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=20.75 E-value=1.1e+02 Score=31.50 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCeEEEEecCC------------------CCHHHHHHHHHHHhcCCCcEEEEEeccccc-ccCCCc---
Q 012657 40 FGKLVCLAHCAGAKVEAFRTNQ------------------STIDDFRKYIIRCSASEDCHVISSYHRGAF-KQTGTG--- 97 (459)
Q Consensus 40 L~ef~cLA~CnGa~Vq~~r~~~------------------~SldeFR~~V~~~~ss~d~~lIVnY~Rk~L-gQtG~G--- 97 (459)
+.++...+...|+.|+..|+.. ..+-.||..|++....- .+.++|.=|.+ |+.|.|
T Consensus 169 ~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~--G~~aTFmpKP~~~~~GsG~H~ 246 (444)
T 3qaj_A 169 RRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKLVVKTIARKH--GLHATFMPKPLFGVNGSGMHC 246 (444)
T ss_dssp HHHHHHHHHTTTCCEEEEEECSSTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHT--TEEEECCSCSSTTSCCCCEEE
T ss_pred HHHHHHHHHHCCCCeEEeEcCcCCCcEEEecCCChHHHHHHHHHHHHHHHHHHHHHc--CCEEEEcCCcCCCCCCCccee
Confidence 4577777888999999988632 14456899999876544 58999999988 778988
Q ss_pred ccccc
Q 012657 98 HFSPI 102 (459)
Q Consensus 98 HFSPI 102 (459)
|+|-.
T Consensus 247 H~Sl~ 251 (444)
T 3qaj_A 247 NLSLF 251 (444)
T ss_dssp EEEEE
T ss_pred eeccc
Confidence 77754
No 17
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=20.31 E-value=97 Score=30.78 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCeEEEEecCC------------------CCHHHHHHHHHHHhcCCCcEEEEEeccccc-c-cCCCc---
Q 012657 41 GKLVCLAHCAGAKVEAFRTNQ------------------STIDDFRKYIIRCSASEDCHVISSYHRGAF-K-QTGTG--- 97 (459)
Q Consensus 41 ~ef~cLA~CnGa~Vq~~r~~~------------------~SldeFR~~V~~~~ss~d~~lIVnY~Rk~L-g-QtG~G--- 97 (459)
+++...+...|+.|+..|..- ..+-.||..|++.... ..+.++|.=|.+ | +.|.|
T Consensus 173 ~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~--~G~~aTFmpKP~~~d~~GSG~H~ 250 (356)
T 2d3a_A 173 DAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEI--AGVVVTFDPKPIPGDWNGAGAHT 250 (356)
T ss_dssp HHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHH--HTEEEECCSCSSCSSSCCCBEEE
T ss_pred HHHHHHHHHCCCCEEEeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHH--hCCEEEECCCccCCCCCCCcceE
Confidence 456666788999999888632 1345689999987643 359999999999 4 58877
Q ss_pred cccc
Q 012657 98 HFSP 101 (459)
Q Consensus 98 HFSP 101 (459)
|+|-
T Consensus 251 H~Sl 254 (356)
T 2d3a_A 251 NYST 254 (356)
T ss_dssp EEEC
T ss_pred Eech
Confidence 7775
Done!