BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012660
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 186/327 (56%), Gaps = 16/327 (4%)
Query: 28 IGINYGKLGSNLPSSYQSIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQNHEII 87
IG+ YG LG+NLP + + K +++YD N L+ L ++++V + V ++
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 88 DIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKC 147
+AS A W+ NV++++P R+I VGNE++ S + + ++PAM I
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGS-----DLAQYILPAMRNIYNA 115
Query: 148 LNAHNIHN-IKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVY 206
L++ + N IKV T + + T++PPS G F S A + P++QFL + ++VY
Sbjct: 116 LSSAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQA-YLSPIVQFLASNGAPLLVNVY 174
Query: 207 PYFAWSTNPKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFAMAKLGYSDIRL 266
PYF+++ NP ISL +AL + D Y NL D ++D+V A+ ++G +++ +
Sbjct: 175 PYFSYTGNPGQISLPYALFTASGVVVQD--GRFSYQNLFDAIVDAVFAALERVGGANVAV 232
Query: 267 AISETGWPNAGDFDQIGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDE 326
+SE+GWP+AG + A+ NA TYN+NLI+ + GTP RPG I +IF +++E
Sbjct: 233 VVSESGWPSAGGGAE--ASTSNAQTYNQNLIRHVGG----GTPRRPGKEIEAYIFEMFNE 286
Query: 327 NQKTGPGTERHWGMLHGNGVPIYEIDL 353
NQK G G E+++G+ + N P+Y+I
Sbjct: 287 NQKAG-GIEQNFGLFYPNKQPVYQISF 312
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 182/326 (55%), Gaps = 20/326 (6%)
Query: 28 IGINYGKLGSNLPSSYQSIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQNHEII 87
IG+ YG +G+NLPS ++ + ++IY A+ + L L + + + + + N ++
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 88 DIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKC 147
+IA+ A WV +NV +YP I++I GNE+ +++ ++PAM +
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQS-------ILPAMRNLNAA 113
Query: 148 LNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYP 207
L+A + IKV T + D +FPPS G F++ + M + + L T + +VYP
Sbjct: 114 LSAAGLGAIKVSTSIRFDEVANSFPPSAGVFKN----AYMTDVARLLASTGAPLLANVYP 169
Query: 208 YFAWSTNPKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFAMAKLGYSDIRLA 267
YFA+ NP +ISL++A + T+ D N+GL YT+L D M+D+V A+ K G +++
Sbjct: 170 YFAYRDNPGSISLNYATF-QPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVV 228
Query: 268 ISETGWPNAGDFDQIGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDEN 327
+SE+GWP+AG F A+ NA TYN+ LI + GTP + + T+IF++++EN
Sbjct: 229 VSESGWPSAGGF---AASAGNARTYNQGLINHVGG----GTPKKR-EALETYIFAMFNEN 280
Query: 328 QKTGPGTERHWGMLHGNGVPIYEIDL 353
QKTG TER +G+ + + P Y I
Sbjct: 281 QKTGDATERSFGLFNPDKSPAYNIQF 306
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 176/326 (53%), Gaps = 20/326 (6%)
Query: 28 IGINYGKLGSNLPSSYQSIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQNHEII 87
IG+ YG +NLP++ + K S+++Y N L+ + GT + V + N +
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 88 DIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKC 147
++A+ A WV N+ + YP+ R++ VGNE+ ++ +NLVPAM +
Sbjct: 61 NLAASPAAAASWVKSNIQA-YPKVSFRYVCVGNEVAGGAT-------RNLVPAMKNVHGA 112
Query: 148 LNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYP 207
L A + +IKV T ++ I PPS G+F + +A+ M P++QFL RT + ++YP
Sbjct: 113 LVAAGLGHIKVTTSVSQAILGVFSPPSAGSFTGE-AAAFMGPVVQFLARTNAPLMANIYP 171
Query: 208 YFAWSTNPKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFAMAKLGYSDIRLA 267
Y AW+ NP + + +AL + T D G Y NL D +D+ AM K G S ++L
Sbjct: 172 YLAWAYNPSAMDMGYALFNASGTVVRDGAYG--YQNLFDTTVDAFYTAMGKHGGSSVKLV 229
Query: 268 ISETGWPNAGDFDQIGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDEN 327
+SE+GWP+ G A NA YN++LI + GTP PG+ I T+IF++++EN
Sbjct: 230 VSESGWPSGGG---TAATPANARFYNQHLINHV----GRGTPRHPGA-IETYIFAMFNEN 281
Query: 328 QKTGPGTERHWGMLHGNGVPIYEIDL 353
QK G E++WG+ + N +Y I+
Sbjct: 282 QKDS-GVEQNWGLFYPNMQHVYPINF 306
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 176/330 (53%), Gaps = 16/330 (4%)
Query: 28 IGINYGKLGSNLPSSYQSIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQNHEII 87
IG+ YGK+ +NLPS I+ ++IY + + L G+++++ + V N ++
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 88 DIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKC 147
+A+ A+ WV DN+ + +P+ ++I VGNE+ E + + + PAM I
Sbjct: 63 ALANPSN-ANGWVQDNIRNHFPDVKFKYIAVGNEV--DPGRESGKYARFVGPAMENIYNA 119
Query: 148 LNAHNIHN-IKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVY 206
L++ + N IKV T + T+PP + FR + S + P++ FL R ++Y
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYK-SFINPIIGFLARHNLPLLANIY 178
Query: 207 PYFAWSTNPKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFAMAKLGYSDIRL 266
PYF N + L +AL + + T Y NL D ++DS+ FA KLG +I +
Sbjct: 179 PYFGHIDNTNAVPLSYALFNQQRRNDTG------YQNLFDALVDSMYFATEKLGGQNIEI 232
Query: 267 AISETGWPNAGDFDQIGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDE 326
+SE+GWP+ G A + NA TY NLI + K GTP +PG I T++F+++DE
Sbjct: 233 IVSESGWPSEG---HPAATLKNARTYYTNLINHV--KRGAGTPKKPGKTIETYLFAMFDE 287
Query: 327 NQKTGPGTERHWGMLHGNGVPIYEIDLSGN 356
N+K G +E+H+G+ + + P Y+++ + N
Sbjct: 288 NEKKGEASEKHFGLFNPDQRPKYQLNFNLN 317
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 176/328 (53%), Gaps = 14/328 (4%)
Query: 28 IGINYGKLGSNLPSSYQSIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQNHEII 87
+G+ YG G+NLP + I K ++IYD N +L+ L G+++++ + V N ++
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 88 DIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKC 147
+ + A WV NV F+ R+I VGNEI S + + + ++PAM I
Sbjct: 62 SLTNPSN-AKSWVQKNVRGFWSSVRFRYIAVGNEI-SPVNRGTAWLAQFVLPAMRNIHDA 119
Query: 148 LNAHNIHN-IKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVY 206
+ + + + IKV T + + + ++PPS G FR D+ S + P+++FL+ +S ++Y
Sbjct: 120 IRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVR-SYLNPIIRFLSSIRSPLLANIY 178
Query: 207 PYFAWSTNPKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFAMAKLGYSDIRL 266
PYF ++ NP+ ISL +AL + D G Y NL D LD++ A+ + + +
Sbjct: 179 PYFTYAGNPRDISLPYALFTSPSVVVWDGQRG--YKNLFDATLDALYSALERASGGSLEV 236
Query: 267 AISETGWPNAGDFDQIGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDE 326
+SE+GWP+AG F A N TY NLI+ + GTP RP I T++F+++DE
Sbjct: 237 VVSESGWPSAGAF---AATFDNGRTYLSNLIQHVKR----GTPKRPKRAIETYLFAMFDE 289
Query: 327 NQKTGPGTERHWGMLHGNGVPIYEIDLS 354
N+K P E+H+G+ N Y ++ S
Sbjct: 290 NKKQ-PEVEKHFGLFFPNKWQKYNLNFS 316
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 177 bits (450), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 175/330 (53%), Gaps = 16/330 (4%)
Query: 28 IGINYGKLGSNLPSSYQSIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQNHEII 87
IG+ YGK+ +NLPS I+ ++IY + + L G+++++ + V N ++
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 88 DIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKC 147
+A+ A+ WV DN+ + +P+ ++I VGNE+ E + + + PAM I
Sbjct: 63 ALANPSN-ANGWVQDNIRNHFPDVKFKYIAVGNEV--DPGRESGKYARFVGPAMENIYNA 119
Query: 148 LNAHNIHN-IKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVY 206
L++ + N IKV T + T+PP + FR + S + P++ FL R ++Y
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYK-SFINPIIGFLARHNLPLLANIY 178
Query: 207 PYFAWSTNPKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFAMAKLGYSDIRL 266
PYF N + L +AL + + T Y NL D ++DS+ FA KLG +I +
Sbjct: 179 PYFGHIDNTNAVPLSYALFNQQRRNDTG------YQNLFDALVDSMYFATEKLGGQNIEI 232
Query: 267 AISETGWPNAGDFDQIGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDE 326
+S +GWP+ G A + NA TY NLI + K GTP +PG I T++F+++DE
Sbjct: 233 IVSASGWPSEG---HPAATLKNARTYYTNLINHV--KRGAGTPKKPGKTIETYLFAMFDE 287
Query: 327 NQKTGPGTERHWGMLHGNGVPIYEIDLSGN 356
N+K G +E+H+G+ + + P Y+++ + N
Sbjct: 288 NEKKGEASEKHFGLFNPDQRPKYQLNFNLN 317
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 372 VPYKGKVWCVVARGADLLALTSALGYACGQGNGTCDALVPGQRCYQPLSLYWHASYAFSS 431
P WCV G LT + YAC QG C + PG C++P ++ HA+Y +
Sbjct: 6 TPKAAGSWCVPKPGVSDDQLTGNINYACSQGI-DCGPIQPGGACFEPNTVKAHAAYVMNL 64
Query: 432 YWAKFMGKGATCYFNGLAQQTIINPS 457
Y+ C F+ A T NPS
Sbjct: 65 YYQHAGRNSWNCDFSQTATLTNTNPS 90
>pdb|2FBO|J Chain J, Crystal Structure Of The Two Tandem V-Type Regions Of
Vcbp3 (V-Region-Containing Chitin Binding Protein) To
1.85 A
Length = 250
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 345 GVPIYEIDLSGNRSLSQYRPLPLAHNNVPYKGKVWCVVARGADLL 389
G+ + +++G S S R L + + G+VWC +A G L
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,357,485
Number of Sequences: 62578
Number of extensions: 627894
Number of successful extensions: 1444
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1406
Number of HSP's gapped (non-prelim): 19
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)