Query 012660
Match_columns 459
No_of_seqs 265 out of 1635
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:59:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.6E-88 3.4E-93 683.1 22.0 309 28-353 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 3E-43 6.6E-48 337.5 23.3 251 25-345 43-305 (305)
3 smart00768 X8 Possibly involve 99.9 2.6E-27 5.6E-32 195.5 7.6 80 378-458 1-80 (85)
4 PF07983 X8: X8 domain; Inter 99.9 2.8E-22 6.1E-27 162.7 6.0 73 378-450 1-78 (78)
5 PF07745 Glyco_hydro_53: Glyco 98.9 1.9E-07 4.1E-12 95.5 20.6 244 42-348 26-326 (332)
6 PF03198 Glyco_hydro_72: Gluca 98.7 1.8E-07 3.8E-12 94.0 14.3 158 28-208 30-216 (314)
7 COG3867 Arabinogalactan endo-1 98.1 0.00012 2.6E-09 73.0 15.0 261 42-353 65-390 (403)
8 PF00150 Cellulase: Cellulase 97.8 0.002 4.4E-08 62.9 18.4 132 27-160 10-172 (281)
9 PRK10150 beta-D-glucuronidase; 97.5 0.0082 1.8E-07 66.5 20.7 240 45-351 318-585 (604)
10 smart00633 Glyco_10 Glycosyl h 97.2 0.022 4.8E-07 56.1 17.3 77 253-349 172-249 (254)
11 PF11790 Glyco_hydro_cc: Glyco 96.1 0.26 5.6E-06 48.3 16.0 67 264-347 166-232 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 92.6 0.57 1.2E-05 47.0 8.8 95 28-122 18-132 (298)
13 PF02449 Glyco_hydro_42: Beta- 78.0 8.8 0.00019 39.9 8.2 103 42-146 12-161 (374)
14 PF00232 Glyco_hydro_1: Glycos 77.0 1.3 2.9E-05 47.5 1.7 73 261-344 353-430 (455)
15 cd02875 GH18_chitobiase Chitob 76.0 7.4 0.00016 40.5 7.0 97 53-155 55-152 (358)
16 PRK09936 hypothetical protein; 69.0 33 0.00072 34.9 9.3 58 28-85 22-96 (296)
17 TIGR03356 BGL beta-galactosida 67.4 11 0.00023 40.3 5.9 41 43-83 57-116 (427)
18 smart00481 POLIIIAc DNA polyme 64.9 18 0.00039 27.7 5.3 44 40-83 15-63 (67)
19 PF00925 GTP_cyclohydro2: GTP 64.1 8.1 0.00018 35.9 3.7 38 45-82 131-168 (169)
20 PRK13511 6-phospho-beta-galact 57.4 30 0.00066 37.4 7.2 46 42-87 56-120 (469)
21 PRK00393 ribA GTP cyclohydrola 57.0 13 0.00029 35.3 4.0 33 46-78 134-166 (197)
22 TIGR00505 ribA GTP cyclohydrol 56.7 14 0.0003 35.1 3.9 33 46-78 131-163 (191)
23 PF06180 CbiK: Cobalt chelatas 55.9 95 0.0021 31.1 9.9 142 36-211 54-208 (262)
24 cd02872 GH18_chitolectin_chito 51.5 59 0.0013 33.4 8.0 79 72-152 68-151 (362)
25 cd04743 NPD_PKS 2-Nitropropane 50.9 84 0.0018 32.4 8.8 79 26-122 56-134 (320)
26 PRK12485 bifunctional 3,4-dihy 50.3 17 0.00038 38.1 3.8 33 45-78 330-362 (369)
27 COG4782 Uncharacterized protei 49.3 60 0.0013 34.1 7.4 60 241-303 125-187 (377)
28 cd02873 GH18_IDGF The IDGF's ( 48.6 48 0.001 35.2 6.9 20 134-153 168-187 (413)
29 PLN02998 beta-glucosidase 47.4 44 0.00095 36.5 6.5 75 261-346 390-466 (497)
30 cd00641 GTP_cyclohydro2 GTP cy 46.7 24 0.00052 33.4 3.9 33 46-78 133-165 (193)
31 PRK13347 coproporphyrinogen II 46.6 36 0.00078 36.5 5.6 109 43-159 152-287 (453)
32 cd02874 GH18_CFLE_spore_hydrol 44.9 45 0.00098 33.6 5.8 83 64-153 48-138 (313)
33 PRK09525 lacZ beta-D-galactosi 44.6 1.6E+02 0.0036 35.1 11.1 96 28-123 353-464 (1027)
34 PRK14019 bifunctional 3,4-dihy 43.5 25 0.00054 36.9 3.7 35 46-81 328-362 (367)
35 PLN02814 beta-glucosidase 43.5 60 0.0013 35.6 6.8 75 261-346 385-461 (504)
36 TIGR01579 MiaB-like-C MiaB-lik 43.1 1.2E+02 0.0027 31.9 8.9 59 133-210 271-329 (414)
37 PRK09989 hypothetical protein; 42.9 1.8E+02 0.0039 28.2 9.5 52 27-79 3-58 (258)
38 PF04909 Amidohydro_2: Amidohy 41.6 67 0.0014 30.6 6.2 52 139-205 85-137 (273)
39 COG2896 MoaA Molybdenum cofact 41.1 2.1E+02 0.0045 29.6 9.9 129 38-198 41-180 (322)
40 PRK09314 bifunctional 3,4-dihy 40.0 33 0.00071 35.7 3.9 34 45-78 300-334 (339)
41 PLN02849 beta-glucosidase 39.9 79 0.0017 34.6 7.0 76 261-346 383-461 (503)
42 PRK08815 GTP cyclohydrolase; P 38.7 35 0.00075 36.0 3.9 37 46-82 305-341 (375)
43 COG4669 EscJ Type III secretor 38.5 3E+02 0.0064 27.4 9.9 90 41-151 32-121 (246)
44 PRK09318 bifunctional 3,4-dihy 38.5 35 0.00077 36.1 3.9 37 46-82 320-356 (387)
45 PRK14334 (dimethylallyl)adenos 38.3 2.1E+02 0.0046 30.5 9.9 57 133-208 270-326 (440)
46 COG0621 MiaB 2-methylthioadeni 37.6 1.1E+02 0.0024 33.0 7.5 130 26-208 194-334 (437)
47 PRK09311 bifunctional 3,4-dihy 37.3 38 0.00083 36.0 4.0 37 45-81 338-374 (402)
48 PLN02831 Bifunctional GTP cycl 37.2 38 0.00082 36.6 4.0 37 46-82 373-409 (450)
49 PRK09997 hydroxypyruvate isome 37.1 3.2E+02 0.007 26.4 10.3 50 29-79 5-58 (258)
50 TIGR03632 bact_S11 30S ribosom 36.7 63 0.0014 27.8 4.6 37 43-79 50-91 (108)
51 PRK09589 celA 6-phospho-beta-g 36.7 70 0.0015 34.7 6.0 46 42-87 69-134 (476)
52 PRK09319 bifunctional 3,4-dihy 36.5 39 0.00084 37.4 3.9 38 45-82 342-379 (555)
53 cd01543 PBP1_XylR Ligand-bindi 36.5 1.4E+02 0.0031 28.4 7.6 75 42-123 97-182 (265)
54 PRK10340 ebgA cryptic beta-D-g 35.3 2.3E+02 0.0051 33.8 10.4 97 28-124 337-452 (1021)
55 PF13377 Peripla_BP_3: Peripla 35.2 1E+02 0.0023 26.7 6.0 121 46-194 1-134 (160)
56 KOG0626 Beta-glucosidase, lact 34.7 1E+02 0.0022 33.9 6.7 74 260-343 404-485 (524)
57 TIGR01233 lacG 6-phospho-beta- 34.4 68 0.0015 34.7 5.4 46 42-87 55-119 (467)
58 PRK13586 1-(5-phosphoribosyl)- 34.3 2.6E+02 0.0057 27.2 9.1 70 40-125 30-108 (232)
59 PF01055 Glyco_hydro_31: Glyco 33.8 1.8E+02 0.0039 30.7 8.5 135 134-325 42-180 (441)
60 TIGR03628 arch_S11P archaeal r 33.8 74 0.0016 27.9 4.6 37 43-79 53-102 (114)
61 PRK14330 (dimethylallyl)adenos 33.8 4.6E+02 0.01 27.8 11.6 58 133-209 273-330 (434)
62 PF14488 DUF4434: Domain of un 33.1 3.9E+02 0.0086 24.6 9.7 41 44-84 24-88 (166)
63 PF03662 Glyco_hydro_79n: Glyc 33.0 1.2E+02 0.0027 31.2 6.7 86 65-151 112-203 (319)
64 PRK14328 (dimethylallyl)adenos 32.7 5.1E+02 0.011 27.6 11.7 58 133-209 280-337 (439)
65 PF06117 DUF957: Enterobacteri 31.8 60 0.0013 25.5 3.2 44 95-151 12-55 (65)
66 cd00598 GH18_chitinase-like Th 31.7 60 0.0013 30.1 4.0 84 66-153 54-142 (210)
67 TIGR02495 NrdG2 anaerobic ribo 31.5 4.1E+02 0.0088 24.3 10.2 42 39-80 46-96 (191)
68 COG2159 Predicted metal-depend 31.4 2.5E+02 0.0055 28.3 8.7 53 139-206 113-165 (293)
69 PRK14326 (dimethylallyl)adenos 30.7 3E+02 0.0066 30.0 9.7 57 133-208 290-346 (502)
70 PF14606 Lipase_GDSL_3: GDSL-l 30.4 2.9E+02 0.0063 26.1 8.2 55 248-303 79-134 (178)
71 TIGR02666 moaA molybdenum cofa 30.3 4.8E+02 0.01 26.4 10.6 43 38-80 41-95 (334)
72 PRK15014 6-phospho-beta-glucos 30.1 87 0.0019 34.0 5.4 42 42-83 71-132 (477)
73 cd06545 GH18_3CO4_chitinase Th 30.1 84 0.0018 30.7 4.9 81 65-153 50-133 (253)
74 PRK07198 hypothetical protein; 30.1 37 0.0008 36.0 2.4 37 46-82 338-375 (418)
75 cd06548 GH18_chitinase The GH1 30.1 1.8E+02 0.0039 29.4 7.5 162 71-269 81-258 (322)
76 PF13756 Stimulus_sens_1: Stim 29.6 73 0.0016 27.5 3.8 27 41-67 2-31 (112)
77 PF02055 Glyco_hydro_30: O-Gly 29.4 5.3E+02 0.012 28.2 11.3 63 98-160 208-278 (496)
78 cd06150 YjgF_YER057c_UK114_lik 29.0 81 0.0018 26.4 4.0 46 115-160 6-57 (105)
79 PRK09607 rps11p 30S ribosomal 28.5 1E+02 0.0022 27.8 4.6 37 43-79 60-109 (132)
80 cd06418 GH25_BacA-like BacA is 28.4 5.4E+02 0.012 24.7 12.0 107 40-154 21-143 (212)
81 PF01229 Glyco_hydro_39: Glyco 27.8 8E+02 0.017 26.5 17.0 185 115-348 158-350 (486)
82 PF15560 Imm8: Immunity protei 27.5 1.2E+02 0.0027 27.1 4.8 56 114-180 5-67 (133)
83 COG3325 ChiA Chitinase [Carboh 27.2 2.1E+02 0.0046 30.7 7.4 115 66-195 116-247 (441)
84 COG1433 Uncharacterized conser 27.2 1E+02 0.0022 27.3 4.3 39 44-82 56-94 (121)
85 KOG0078 GTP-binding protein SE 26.7 1.4E+02 0.003 29.0 5.4 78 26-122 43-127 (207)
86 PF07172 GRP: Glycine rich pro 26.6 52 0.0011 27.8 2.3 24 1-24 1-24 (95)
87 CHL00041 rps11 ribosomal prote 25.9 1.2E+02 0.0027 26.4 4.6 35 44-78 64-103 (116)
88 cd06156 eu_AANH_C_2 A group of 25.5 1.2E+02 0.0026 26.3 4.5 29 133-161 31-60 (118)
89 PF13721 SecD-TM1: SecD export 25.5 2.5E+02 0.0054 23.8 6.3 36 24-59 30-65 (101)
90 TIGR01125 MiaB-like tRNA modif 25.4 4.9E+02 0.011 27.6 10.0 60 133-211 268-327 (430)
91 COG0807 RibA GTP cyclohydrolas 25.4 1.1E+02 0.0025 29.2 4.6 39 46-84 133-171 (193)
92 PF14871 GHL6: Hypothetical gl 24.9 1.4E+02 0.003 26.7 4.8 43 41-83 1-66 (132)
93 PF05990 DUF900: Alpha/beta hy 24.7 2E+02 0.0043 27.9 6.4 42 257-301 43-87 (233)
94 TIGR03820 lys_2_3_AblA lysine- 24.6 2.7E+02 0.0058 29.9 7.7 13 140-152 264-276 (417)
95 PF03102 NeuB: NeuB family; I 24.5 1.8E+02 0.004 28.6 6.1 56 43-102 79-137 (241)
96 PRK07379 coproporphyrinogen II 24.4 2.3E+02 0.0051 29.8 7.3 25 135-159 227-251 (400)
97 PF00411 Ribosomal_S11: Riboso 24.4 97 0.0021 26.7 3.7 36 44-79 51-91 (110)
98 PRK05309 30S ribosomal protein 24.2 1.4E+02 0.003 26.6 4.7 36 43-78 67-107 (128)
99 TIGR03822 AblA_like_2 lysine-2 23.6 3.6E+02 0.0077 27.5 8.2 39 45-83 158-206 (321)
100 cd03412 CbiK_N Anaerobic cobal 23.1 3E+02 0.0064 24.1 6.6 47 36-82 52-108 (127)
101 PRK14332 (dimethylallyl)adenos 22.9 9.1E+02 0.02 25.9 11.5 114 133-273 284-397 (449)
102 PF00977 His_biosynth: Histidi 22.6 2.3E+02 0.0049 27.4 6.3 71 40-126 29-109 (229)
103 COG1509 KamA Lysine 2,3-aminom 22.4 4E+02 0.0086 28.1 8.2 96 40-153 172-281 (369)
104 smart00636 Glyco_18 Glycosyl h 22.2 2.5E+02 0.0053 28.3 6.8 80 67-151 57-142 (334)
105 PRK14327 (dimethylallyl)adenos 21.4 7E+02 0.015 27.4 10.4 57 133-208 345-401 (509)
106 cd04723 HisA_HisF Phosphoribos 21.4 3.1E+02 0.0068 26.5 7.0 69 41-125 36-113 (233)
107 PRK14114 1-(5-phosphoribosyl)- 21.3 3.1E+02 0.0068 26.9 7.0 71 40-126 30-109 (241)
108 PRK14338 (dimethylallyl)adenos 20.8 5.2E+02 0.011 27.8 9.2 55 28-82 207-273 (459)
109 PF02811 PHP: PHP domain; Int 20.7 1.6E+02 0.0035 26.0 4.6 44 40-83 16-64 (175)
110 PRK14336 (dimethylallyl)adenos 20.5 6E+02 0.013 26.9 9.5 55 28-82 176-242 (418)
111 PF00834 Ribul_P_3_epim: Ribul 20.4 6.2E+02 0.013 24.1 8.7 99 41-159 68-172 (201)
112 PRK05904 coproporphyrinogen II 20.3 2.9E+02 0.0064 28.6 6.9 108 43-159 103-234 (353)
113 TIGR00640 acid_CoA_mut_C methy 20.3 2.4E+02 0.0051 25.0 5.4 45 40-84 40-96 (132)
114 COG4213 XylF ABC-type xylose t 20.2 1.3E+02 0.0029 31.0 4.1 73 65-160 176-249 (341)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.6e-88 Score=683.05 Aligned_cols=309 Identities=49% Similarity=0.891 Sum_probs=254.0
Q ss_pred ceEEecCCCCCCCCHHHHHHHHHhCCCCeEEEecCChhhhhhhhcCCceEEEEeccchhHHHhhhHHHHHHHHHhhcccc
Q 012660 28 IGINYGKLGSNLPSSYQSIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQNHEIIDIASKQKVADQWVHDNVLSF 107 (459)
Q Consensus 28 ~GvnYg~~~~nlps~~~vv~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~~ 107 (459)
||||||+.++|||+|.+|++++|+++|++||||++|+++|+|+++|||+|+|||+|++++++++++..|..||++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCCCc-eEeccccccccccccCCCCCccccCcchhhh
Q 012660 108 YPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNIHN-IKVGTPLAMDIFQTTFPPSNGTFRSDISASV 186 (459)
Q Consensus 108 ~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~-IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~ 186 (459)
+|.++|++|+||||++... +.. .|||+|+++|++|.++||++ |||+|+++++++..+||||+|.|++++. ++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~---~~~---~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~-~~ 153 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGT---DNA---YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIA-SV 153 (310)
T ss_dssp TTTSEEEEEEEEES-TCCS---GGG---GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHH-HH
T ss_pred CcccceeeeecccccccCc---cce---eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccch-hh
Confidence 9999999999999999876 222 89999999999999999997 9999999999999999999999999987 89
Q ss_pred hHHHHHHHhhcCCccccccccccccCCCCCccCcchhhcccCCCccccCCCCcccchhHHHHHHHHHHHHHHcCCCCceE
Q 012660 187 MEPLLQFLNRTKSFFFLDVYPYFAWSTNPKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFAMAKLGYSDIRL 266 (459)
Q Consensus 187 ~~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~~~d~~~~~~Y~n~fda~~Dav~~A~~k~g~~~~~v 266 (459)
|+++++||.+++||||+|+||||++..+|..++||||+|++ +..++|+ +++|+||||+|+|++++||+|+|+++++|
T Consensus 154 ~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~-~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~v 230 (310)
T PF00332_consen 154 MDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQP-NSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPV 230 (310)
T ss_dssp HHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-S-SS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--E
T ss_pred hhHHHHHhhccCCCceeccchhhhccCCcccCCcccccccc-ccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCcee
Confidence 99999999999999999999999999999999999999998 6666665 88999999999999999999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEEEeccCCCCCCCCCCceeeeecCCCC
Q 012660 267 AISETGWPNAGDFDQIGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDENQKTGPGTERHWGMLHGNGV 346 (459)
Q Consensus 267 vVsETGWPS~G~~~~~~as~~na~~y~~~li~~~~s~~~~GTp~rp~~~~~~yiF~lFDe~~K~G~~~E~~wGlf~~d~~ 346 (459)
+|+||||||+|+ .+|+.+||+.|++++++|+. + |||+||+..+++||||||||+||+|+.+|||||||++||+
T Consensus 231 vv~ETGWPs~G~---~~a~~~nA~~~~~nl~~~~~--~--gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~ 303 (310)
T PF00332_consen 231 VVGETGWPSAGD---PGATPENAQAYNQNLIKHVL--K--GTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGT 303 (310)
T ss_dssp EEEEE---SSSS---TTCSHHHHHHHHHHHHHHCC--G--BBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSS
T ss_pred EEeccccccCCC---CCCCcchhHHHHHHHHHHHh--C--CCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCC
Confidence 999999999998 46999999999999999997 3 9999999999999999999999998779999999999999
Q ss_pred eeEEeee
Q 012660 347 PIYEIDL 353 (459)
Q Consensus 347 ~ky~l~~ 353 (459)
|||+|+|
T Consensus 304 ~ky~~~f 310 (310)
T PF00332_consen 304 PKYDLDF 310 (310)
T ss_dssp BSS----
T ss_pred eecCCCC
Confidence 9999986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-43 Score=337.53 Aligned_cols=251 Identities=18% Similarity=0.274 Sum_probs=199.4
Q ss_pred CCcceEEecCCCCC--CCCHHHHHHHHH---hCCCCeEEEecCCh----hhhhhhhcCCceEEEEeccchhHHHhhhHHH
Q 012660 25 SDKIGINYGKLGSN--LPSSYQSIESIK---FLQAGSVKIYDANP----EILKLLSGTDLKVSIMVQNHEIIDIASKQKV 95 (459)
Q Consensus 25 ~~~~GvnYg~~~~n--lps~~~vv~llk---s~~~~~VRlY~~d~----~vL~A~~~tgi~v~vGv~n~~l~~~a~~~~~ 95 (459)
.+..+|+||++.++ +|+.+++..+|. +.. ..||+|++|| +|++|+...|++|+||||..+- +. ..
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t-~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd--~~---~~ 116 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYT-HSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDD--IH---DA 116 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCC-ceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccc--hh---hh
Confidence 45689999999987 789999976554 433 3999999997 5788999999999999996431 11 12
Q ss_pred HHHHHHhhccccCCCceEEEEEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCC
Q 012660 96 ADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSN 175 (459)
Q Consensus 96 A~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~ 175 (459)
.++-+...+++++..+.|++|+||||+|+|+ + .++++|+.+|..+|.+|+.+|++ +||+|+++|.++.+.
T Consensus 117 ~~~til~ay~~~~~~d~v~~v~VGnEal~r~---~-~tasql~~~I~~vrsav~~agy~-gpV~T~dsw~~~~~n----- 186 (305)
T COG5309 117 VEKTILSAYLPYNGWDDVTTVTVGNEALNRN---D-LTASQLIEYIDDVRSAVKEAGYD-GPVTTVDSWNVVINN----- 186 (305)
T ss_pred HHHHHHHHHhccCCCCceEEEEechhhhhcC---C-CCHHHHHHHHHHHHHHHHhcCCC-CceeecccceeeeCC-----
Confidence 2224566788888889999999999999998 3 46999999999999999999987 599999999888752
Q ss_pred ccccCcchhhhhHHHHHHHhhcCCccccccccccccCCCCCccCcchhhcccCCCccccCCCCcccchhHHHHHHHHHHH
Q 012660 176 GTFRSDISASVMEPLLQFLNRTKSFFFLDVYPYFAWSTNPKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFA 255 (459)
Q Consensus 176 g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~~~d~~~~~~Y~n~fda~~Dav~~A 255 (459)
+.+++..||+ |+|.||||+.+... + ..++ ++-.|+.-++++
T Consensus 187 ---------p~l~~~SDfi-------a~N~~aYwd~~~~a------------------~----~~~~-f~~~q~e~vqsa 227 (305)
T COG5309 187 ---------PELCQASDFI-------AANAHAYWDGQTVA------------------N----AAGT-FLLEQLERVQSA 227 (305)
T ss_pred ---------hHHhhhhhhh-------hcccchhccccchh------------------h----hhhH-HHHHHHHHHHHh
Confidence 4566777776 89999999864221 1 1122 344556655543
Q ss_pred HHHcCCCCceEEEeecCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEEEeccCCCC-CCC-
Q 012660 256 MAKLGYSDIRLAISETGWPNAGDFDQ-IGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDENQK-TGP- 332 (459)
Q Consensus 256 ~~k~g~~~~~vvVsETGWPS~G~~~~-~~as~~na~~y~~~li~~~~s~~~~GTp~rp~~~~~~yiF~lFDe~~K-~G~- 332 (459)
...+|.|||+||||||+|..++ +.||++||+.|++++++.+++. ++++|+||+|||+|| +|.
T Consensus 228 ----~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~-----------G~d~fvfeAFdd~WK~~~~y 292 (305)
T COG5309 228 ----CGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC-----------GYDVFVFEAFDDDWKADGSY 292 (305)
T ss_pred ----cCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc-----------CccEEEeeeccccccCcccc
Confidence 3345999999999999999874 6799999999999999988754 589999999999999 465
Q ss_pred CCCceeeeecCCC
Q 012660 333 GTERHWGMLHGNG 345 (459)
Q Consensus 333 ~~E~~wGlf~~d~ 345 (459)
.+|+|||++..|+
T Consensus 293 ~VEkywGv~~s~~ 305 (305)
T COG5309 293 GVEKYWGVLSSDR 305 (305)
T ss_pred chhhceeeeccCC
Confidence 7999999998775
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.94 E-value=2.6e-27 Score=195.47 Aligned_cols=80 Identities=48% Similarity=0.876 Sum_probs=78.0
Q ss_pred eeEEEecCCChHHHHHHhcccccCCCCCccccCCCCCCCCCCChhhhHhHHHhHHHHhhcCCCCCCCCCceeEEEccCCC
Q 012660 378 VWCVVARGADLLALTSALGYACGQGNGTCDALVPGQRCYQPLSLYWHASYAFSSYWAKFMGKGATCYFNGLAQQTIINPS 457 (459)
Q Consensus 378 ~~Cv~~~~~~~~~l~~~ld~aCg~~~~dC~~I~~~g~C~~p~t~~~~asya~N~Yyq~~~~~~~~CdF~G~a~i~~~dps 457 (459)
+|||+|+++++++||++|||||+++ +||++|++||+||.|+++++|||||||+|||++++..++|||+|+|++++.|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 5999999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 012660 458 E 458 (459)
Q Consensus 458 ~ 458 (459)
+
T Consensus 80 ~ 80 (85)
T smart00768 80 T 80 (85)
T ss_pred C
Confidence 5
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.86 E-value=2.8e-22 Score=162.68 Aligned_cols=73 Identities=38% Similarity=0.694 Sum_probs=60.2
Q ss_pred eeEEEecCCChHHHHHHhcccccCCCCCccccCCCCC-----CCCCCChhhhHhHHHhHHHHhhcCCCCCCCCCceeE
Q 012660 378 VWCVVARGADLLALTSALGYACGQGNGTCDALVPGQR-----CYQPLSLYWHASYAFSSYWAKFMGKGATCYFNGLAQ 450 (459)
Q Consensus 378 ~~Cv~~~~~~~~~l~~~ld~aCg~~~~dC~~I~~~g~-----C~~p~t~~~~asya~N~Yyq~~~~~~~~CdF~G~a~ 450 (459)
+|||+++++++++|+++|||||+++.+||++|+++|. .+++|+.++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 6999999999999999999999987799999999998 344444499999999999999999999999999997
No 5
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.89 E-value=1.9e-07 Score=95.45 Aligned_cols=244 Identities=19% Similarity=0.261 Sum_probs=121.1
Q ss_pred HHHHHHHHHhCCCCeE--EEec-C------C-hh---hhhhhhcCCceEEEEeccc------------------hhHHHh
Q 012660 42 SYQSIESIKFLQAGSV--KIYD-A------N-PE---ILKLLSGTDLKVSIMVQNH------------------EIIDIA 90 (459)
Q Consensus 42 ~~~vv~llks~~~~~V--RlY~-~------d-~~---vL~A~~~tgi~v~vGv~n~------------------~l~~~a 90 (459)
..++.++||..|++.| |+|- + | .. +.+.+++.||+|+|-.--. .+..++
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 4678999999998755 5552 1 1 12 3455678999999998321 122232
Q ss_pred hhHHHHHHHHHhhccccC-CCceEEEEEeccccccCCc--hhhhhhHHHHHHHHHHHHHHHHhCCCCceEeccccccccc
Q 012660 91 SKQKVADQWVHDNVLSFY-PETMIRFILVGNEILSQSS--EEYKQIWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIF 167 (459)
Q Consensus 91 ~~~~~A~~wv~~~v~~~~-~~~~I~~I~VGNEvl~~~~--~~~~~~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l 167 (459)
++..++.++-+..+- -+..+..|-||||+-..=. .+.....+.+...++.-.+++++.+- ++||-.-.
T Consensus 106 ---~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p-~~kV~lH~----- 176 (332)
T PF07745_consen 106 ---KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP-NIKVMLHL----- 176 (332)
T ss_dssp ---HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS-TSEEEEEE-----
T ss_pred ---HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC-CCcEEEEE-----
Confidence 223333333333221 2467889999999743210 00122356677777777777776432 24443211
Q ss_pred cccCCCCCccccCcchhhhhHHHHHHHhhcC---CccccccccccccCCCCCccCcchhhcccCCCccccCCCCcccchh
Q 012660 168 QTTFPPSNGTFRSDISASVMEPLLQFLNRTK---SFFFLDVYPYFAWSTNPKTISLDFALLRETNTSYTDPNSGLVYTNL 244 (459)
Q Consensus 168 ~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~---sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~~~d~~~~~~Y~n~ 244 (459)
.+ |- +. ..++-..+-|.+.+ |.+.++.||||... + +-
T Consensus 177 ~~--~~-------~~--~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~-------l----------------------~~ 216 (332)
T PF07745_consen 177 AN--GG-------DN--DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT-------L----------------------ED 216 (332)
T ss_dssp S---TT-------SH--HHHHHHHHHHHHTTGG-SEEEEEE-STTST--------H----------------------HH
T ss_pred CC--CC-------ch--HHHHHHHHHHHhcCCCcceEEEecCCCCcch-------H----------------------HH
Confidence 11 00 00 22334455555544 78999999999741 0 11
Q ss_pred HHHHHHHHHHHHHHcCCCCceEEEeecCCCCCCCC-----CC---------CCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Q 012660 245 LDQMLDSVIFAMAKLGYSDIRLAISETGWPNAGDF-----DQ---------IGANIYNAATYNRNLIKKMTSKPALGTPA 310 (459)
Q Consensus 245 fda~~Dav~~A~~k~g~~~~~vvVsETGWPS~G~~-----~~---------~~as~~na~~y~~~li~~~~s~~~~GTp~ 310 (459)
+...++.+. ++. +|+|+|.|||||..-.. +. -.+|++.|+.|++++++.+.+- |-
T Consensus 217 l~~~l~~l~---~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~-----p~ 285 (332)
T PF07745_consen 217 LKNNLNDLA---SRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV-----PN 285 (332)
T ss_dssp HHHHHHHHH---HHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------
T ss_pred HHHHHHHHH---HHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh-----cc
Confidence 222333322 333 48999999999998211 10 1268999999999999988742 11
Q ss_pred CCCCCccEEEEE-eccCCC-----CCCCCCCceeeeecCCCCee
Q 012660 311 RPGSIIPTFIFS-LYDENQ-----KTGPGTERHWGMLHGNGVPI 348 (459)
Q Consensus 311 rp~~~~~~yiF~-lFDe~~-----K~G~~~E~~wGlf~~d~~~k 348 (459)
+..+-+|+-| ..-..+ ..|...|.. +||+.+|++-
T Consensus 286 --~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l 326 (332)
T PF07745_consen 286 --GGGLGVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNAL 326 (332)
T ss_dssp --TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-
T ss_pred --CCeEEEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCc
Confidence 1134454443 333322 234344444 8998888754
No 6
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.74 E-value=1.8e-07 Score=94.03 Aligned_cols=158 Identities=20% Similarity=0.294 Sum_probs=84.9
Q ss_pred ceEEecCCCC-------CC-CCHH---HHHHHHHhCCCCeEEEecCCh-----hhhhhhhcCCceEEEEeccc--hhHHH
Q 012660 28 IGINYGKLGS-------NL-PSSY---QSIESIKFLQAGSVKIYDANP-----EILKLLSGTDLKVSIMVQNH--EIIDI 89 (459)
Q Consensus 28 ~GvnYg~~~~-------nl-ps~~---~vv~llks~~~~~VRlY~~d~-----~vL~A~~~tgi~v~vGv~n~--~l~~~ 89 (459)
.||.|-+-++ |. -.++ +.+.+||+.|+..||+|..|| +-+++|++.||=|++.|... .|...
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r~ 109 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSINRS 109 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--TT
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCccccCC
Confidence 6999998876 22 2232 235688999999999999886 46899999999999999643 22211
Q ss_pred ------hhhHHHHHHHHHhhccccCCCceEEEEEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCCCceEeccccc
Q 012660 90 ------ASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNIHNIKVGTPLA 163 (459)
Q Consensus 90 ------a~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~ 163 (459)
....-.. +.+-|..|..-+|+-+..+|||++.... ....++.+=.+++.+|+-+++.++..|+|+-+-+
T Consensus 110 ~P~~sw~~~l~~~---~~~vid~fa~Y~N~LgFf~GNEVin~~~--~t~aap~vKAavRD~K~Yi~~~~~R~IPVGYsaa 184 (314)
T PF03198_consen 110 DPAPSWNTDLLDR---YFAVIDAFAKYDNTLGFFAGNEVINDAS--NTNAAPYVKAAVRDMKAYIKSKGYRSIPVGYSAA 184 (314)
T ss_dssp S------HHHHHH---HHHHHHHHTT-TTEEEEEEEESSS-STT---GGGHHHHHHHHHHHHHHHHHSSS----EEEEE-
T ss_pred CCcCCCCHHHHHH---HHHHHHHhccCCceEEEEecceeecCCC--CcccHHHHHHHHHHHHHHHHhcCCCCCceeEEcc
Confidence 1111111 1222333333389999999999998641 2345777889999999999999987799985432
Q ss_pred cccccccCCCCCccccCcchhhhhHHHHHHHh-----hcCCccccccccc
Q 012660 164 MDIFQTTFPPSNGTFRSDISASVMEPLLQFLN-----RTKSFFFLDVYPY 208 (459)
Q Consensus 164 ~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~-----~~~sp~~vNiyPy 208 (459)
++- ..-.++.++|. +.-+.+.+|.|-|
T Consensus 185 -D~~-----------------~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~W 216 (314)
T PF03198_consen 185 -DDA-----------------EIRQDLANYLNCGDDDERIDFFGLNSYEW 216 (314)
T ss_dssp ---T-----------------TTHHHHHHHTTBTT-----S-EEEEE---
T ss_pred -CCh-----------------hHHHHHHHHhcCCCcccccceeeecccee
Confidence 110 11234556664 2346778888754
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=0.00012 Score=72.97 Aligned_cols=261 Identities=21% Similarity=0.316 Sum_probs=131.2
Q ss_pred HHHHHHHHHhCCCCeEE--Ee----cCC--------hh------hhhhhhcCCceEEEEeccchh-HHHhhhHHHHHHH-
Q 012660 42 SYQSIESIKFLQAGSVK--IY----DAN--------PE------ILKLLSGTDLKVSIMVQNHEI-IDIASKQKVADQW- 99 (459)
Q Consensus 42 ~~~vv~llks~~~~~VR--lY----~~d--------~~------vL~A~~~tgi~v~vGv~n~~l-~~~a~~~~~A~~w- 99 (459)
++++.+.||..|+..|| +| |.| .+ +-+-+++.||||++-.--.|- .+=+ .+..-.+|
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPa-kQ~kPkaW~ 143 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPA-KQKKPKAWE 143 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChh-hcCCcHHhh
Confidence 46678999999987555 55 443 12 234446789999998742220 0000 00000112
Q ss_pred ------HHhhcccc--------C-CCceEEEEEeccccccCCc--hhhhhhHHHHHHHHHHHHHHHHhCCCCceEecccc
Q 012660 100 ------VHDNVLSF--------Y-PETMIRFILVGNEILSQSS--EEYKQIWKNLVPAMHRIKKCLNAHNIHNIKVGTPL 162 (459)
Q Consensus 100 ------v~~~v~~~--------~-~~~~I~~I~VGNEvl~~~~--~~~~~~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~ 162 (459)
+++.|-.| . -+..+..|-||||.-..-. -+...-...+...++.--++++...- .|||---
T Consensus 144 ~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p-~ikv~lH- 221 (403)
T COG3867 144 NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSP-TIKVALH- 221 (403)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCC-CceEEEE-
Confidence 11222111 1 1356778999999843210 00111133344444444444443221 2555432
Q ss_pred ccccccccCCCCCccccCcchhhhhHHHHHHHhhcCCccccccccccccCCCCCccCcchhhcccCCCccccCCCCcccc
Q 012660 163 AMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYPYFAWSTNPKTISLDFALLRETNTSYTDPNSGLVYT 242 (459)
Q Consensus 163 ~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~~~d~~~~~~Y~ 242 (459)
|. .|-..+.||- +.+.+-+.-+|| +.|..--||||...-+ .++ +
T Consensus 222 ----la--~g~~n~~y~~-~fd~ltk~nvdf-----DVig~SyYpyWhgtl~-----------------------nL~-~ 265 (403)
T COG3867 222 ----LA--EGENNSLYRW-IFDELTKRNVDF-----DVIGSSYYPYWHGTLN-----------------------NLT-T 265 (403)
T ss_pred ----ec--CCCCCchhhH-HHHHHHHcCCCc-----eEEeeeccccccCcHH-----------------------HHH-h
Confidence 22 1223344541 111222222333 5778899999986321 111 1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCceEEEeecCC--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHhcCC----
Q 012660 243 NLLDQMLDSVIFAMAKLGYSDIRLAISETGW--------------PNAGDFDQIGANIYNAATYNRNLIKKMTSKP---- 304 (459)
Q Consensus 243 n~fda~~Dav~~A~~k~g~~~~~vvVsETGW--------------PS~G~~~~~~as~~na~~y~~~li~~~~s~~---- 304 (459)
| ++++-+ + | +|.|+|.||+. |+.+.......+++-|++|.+++|..+..-.
T Consensus 266 n-l~dia~-------r--Y-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~G 334 (403)
T COG3867 266 N-LNDIAS-------R--Y-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNG 334 (403)
T ss_pred H-HHHHHH-------H--h-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCc
Confidence 1 222211 1 1 48999999998 5555332234788999999999999886321
Q ss_pred -------CCCCCCCCCCCccE-EEEEeccCCCCCCCCCCceeeeecCCCCeeEEeee
Q 012660 305 -------ALGTPARPGSIIPT-FIFSLYDENQKTGPGTERHWGMLHGNGVPIYEIDL 353 (459)
Q Consensus 305 -------~~GTp~rp~~~~~~-yiF~lFDe~~K~G~~~E~~wGlf~~d~~~ky~l~~ 353 (459)
+..-|.++|..+.+ |--+.-.|+|+.|..++ +=-||+.+|.|--+|+.
T Consensus 335 lGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavd-NqaLfdf~G~~LPSl~v 390 (403)
T COG3867 335 LGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVD-NQALFDFNGHPLPSLNV 390 (403)
T ss_pred eEEEEecccceeccCCCccccchhhccCcccccCCCccc-hhhhhhccCCcCcchhh
Confidence 11134444444433 22223346777664333 23577777777666554
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.78 E-value=0.002 Score=62.94 Aligned_cols=132 Identities=16% Similarity=0.082 Sum_probs=80.5
Q ss_pred cceEEecCCCCCCCCHHHHHHHHHhCCCCeEEEecC-------C------h-------hhhhhhhcCCceEEEEeccch-
Q 012660 27 KIGINYGKLGSNLPSSYQSIESIKFLQAGSVKIYDA-------N------P-------EILKLLSGTDLKVSIMVQNHE- 85 (459)
Q Consensus 27 ~~GvnYg~~~~nlps~~~vv~llks~~~~~VRlY~~-------d------~-------~vL~A~~~tgi~v~vGv~n~~- 85 (459)
..|+|-- ..++. ..++.++.+++.|++.|||.-. + . .+|+++++.||.|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3466665 22222 6788899999999999999722 1 1 477888999999999987530
Q ss_pred ---hHHHhhhHHHHHHHHHh---hc-cccCCCceEEEEEeccccccCCch--hhhhhHHHHHHHHHHHHHHHHhCCCCc-
Q 012660 86 ---IIDIASKQKVADQWVHD---NV-LSFYPETMIRFILVGNEILSQSSE--EYKQIWKNLVPAMHRIKKCLNAHNIHN- 155 (459)
Q Consensus 86 ---l~~~a~~~~~A~~wv~~---~v-~~~~~~~~I~~I~VGNEvl~~~~~--~~~~~~~~Lv~am~~v~~aL~~~gl~~- 155 (459)
-...........+|+++ .+ ..|-....|.++=+.||+...... -.......+.+.++.+.+++++.+-+.
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 00000111112222221 22 223234567899999999876410 001123678899999999999998766
Q ss_pred eEecc
Q 012660 156 IKVGT 160 (459)
Q Consensus 156 IkVsT 160 (459)
|-|+.
T Consensus 168 i~~~~ 172 (281)
T PF00150_consen 168 IIVGG 172 (281)
T ss_dssp EEEEE
T ss_pred eecCC
Confidence 55554
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.54 E-value=0.0082 Score=66.46 Aligned_cols=240 Identities=12% Similarity=0.095 Sum_probs=126.7
Q ss_pred HHHHHHhCCCCeEEEe--cCChhhhhhhhcCCceEEEEeccch---------------hHHHh------hhHHHHHHHHH
Q 012660 45 SIESIKFLQAGSVKIY--DANPEILKLLSGTDLKVSIMVQNHE---------------IIDIA------SKQKVADQWVH 101 (459)
Q Consensus 45 vv~llks~~~~~VRlY--~~d~~vL~A~~~tgi~v~vGv~n~~---------------l~~~a------~~~~~A~~wv~ 101 (459)
.+++||+.|++.||+- -.++..+.++-..||-|+.=++... -+... .......+-++
T Consensus 318 d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 318 DHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 3667899999999993 2356899999999998885443210 00000 01112223345
Q ss_pred hhccccCCCceEEEEEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCc
Q 012660 102 DNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSD 181 (459)
Q Consensus 102 ~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~ 181 (459)
+-|..+.-...|..=.+|||.-... ...-..++.+.+.+++..=++ +|+.+..+ .. +|..
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~~~--------~~~~~~~~~l~~~~k~~DptR-~vt~~~~~---~~--~~~~------ 457 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPASRE--------QGAREYFAPLAELTRKLDPTR-PVTCVNVM---FA--TPDT------ 457 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCccc--------hhHHHHHHHHHHHHHhhCCCC-ceEEEecc---cC--Cccc------
Confidence 5555554345688889999974332 111233344444444443222 33333211 00 0100
Q ss_pred chhhhhHHHHHHHhhcCCccccccccccccCCCCCccCcchhhcccCCCccccCCCCcccchhHHHHHHHHHHHHHHcCC
Q 012660 182 ISASVMEPLLQFLNRTKSFFFLDVYPYFAWSTNPKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFAMAKLGY 261 (459)
Q Consensus 182 ~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~~~d~~~~~~Y~n~fda~~Dav~~A~~k~g~ 261 (459)
..+.+++|++ ..|.|+=|- .+.... +. ....|+..++.. .+ .+
T Consensus 458 ---~~~~~~~Dv~-------~~N~Y~~wy--~~~~~~----~~----------------~~~~~~~~~~~~----~~-~~ 500 (604)
T PRK10150 458 ---DTVSDLVDVL-------CLNRYYGWY--VDSGDL----ET----------------AEKVLEKELLAW----QE-KL 500 (604)
T ss_pred ---ccccCcccEE-------EEcccceec--CCCCCH----HH----------------HHHHHHHHHHHH----HH-hc
Confidence 1112344443 578765321 111000 00 001122222221 11 12
Q ss_pred CCceEEEeecCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEEEeccCCCCCCC--CCCc
Q 012660 262 SDIRLAISETGWPNAGDFD---QIGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDENQKTGP--GTER 336 (459)
Q Consensus 262 ~~~~vvVsETGWPS~G~~~---~~~as~~na~~y~~~li~~~~s~~~~GTp~rp~~~~~~yiF~lFDe~~K~G~--~~E~ 336 (459)
+++++++|.|+.+.-+.. ...-|.+.|..|++...+.+.+ +|. -+-.||..+||-....|. ....
T Consensus 501 -~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~--------~p~-~~G~~iW~~~D~~~~~g~~~~~g~ 570 (604)
T PRK10150 501 -HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR--------VPA-VVGEQVWNFADFATSQGILRVGGN 570 (604)
T ss_pred -CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc--------CCc-eEEEEEEeeeccCCCCCCcccCCC
Confidence 799999999976632211 1124688888888877776542 232 356899999996554331 1234
Q ss_pred eeeeecCCCCeeEEe
Q 012660 337 HWGMLHGNGVPIYEI 351 (459)
Q Consensus 337 ~wGlf~~d~~~ky~l 351 (459)
+.||++.||+||-..
T Consensus 571 ~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 571 KKGIFTRDRQPKSAA 585 (604)
T ss_pred cceeEcCCCCChHHH
Confidence 789999999999543
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.21 E-value=0.022 Score=56.11 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=52.2
Q ss_pred HHHHHHcCCCCceEEEeecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEEEeccC-CCCCC
Q 012660 253 IFAMAKLGYSDIRLAISETGWPNAGDFDQIGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDE-NQKTG 331 (459)
Q Consensus 253 ~~A~~k~g~~~~~vvVsETGWPS~G~~~~~~as~~na~~y~~~li~~~~s~~~~GTp~rp~~~~~~yiF~lFDe-~~K~G 331 (459)
.+.|++++--+++|.|||.+-|..+ +.+.|+.+++++++.+.+. | + ...+++..+.|. .|.++
T Consensus 172 ~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~-----p---~-v~gi~~Wg~~d~~~W~~~ 235 (254)
T smart00633 172 RAALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH-----P---A-VTGVTVWGVTDKYSWLDG 235 (254)
T ss_pred HHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC-----C---C-eeEEEEeCCccCCcccCC
Confidence 3344444444799999999988753 3378889999999988653 2 1 233555566663 45543
Q ss_pred CCCCceeeeecCCCCeeE
Q 012660 332 PGTERHWGMLHGNGVPIY 349 (459)
Q Consensus 332 ~~~E~~wGlf~~d~~~ky 349 (459)
.+-|||+.|++||-
T Consensus 236 ----~~~~L~d~~~~~kp 249 (254)
T smart00633 236 ----GAPLLFDANYQPKP 249 (254)
T ss_pred ----CCceeECCCCCCCh
Confidence 46799999998874
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.14 E-value=0.26 Score=48.28 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=45.9
Q ss_pred ceEEEeecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEEEeccCCCCCCCCCCceeeeecC
Q 012660 264 IRLAISETGWPNAGDFDQIGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDENQKTGPGTERHWGMLHG 343 (459)
Q Consensus 264 ~~vvVsETGWPS~G~~~~~~as~~na~~y~~~li~~~~s~~~~GTp~rp~~~~~~yiF~lFDe~~K~G~~~E~~wGlf~~ 343 (459)
+||+|||.|+...+. ..+.+.++.|.+..+..+.+.. . .-.++||...+ .+. .....-.|++.
T Consensus 166 kPIWITEf~~~~~~~----~~~~~~~~~fl~~~~~~ld~~~--------~-VeryawF~~~~-~~~---~~~~~~~L~~~ 228 (239)
T PF11790_consen 166 KPIWITEFGCWNGGS----QGSDEQQASFLRQALPWLDSQP--------Y-VERYAWFGFMN-DGS---GVNPNSALLDA 228 (239)
T ss_pred CCEEEEeecccCCCC----CCCHHHHHHHHHHHHHHHhcCC--------C-eeEEEeccccc-ccC---CCccccccccC
Confidence 999999999877222 4788999999999999886432 2 24577888322 222 34455667777
Q ss_pred CCCe
Q 012660 344 NGVP 347 (459)
Q Consensus 344 d~~~ 347 (459)
+|++
T Consensus 229 ~G~l 232 (239)
T PF11790_consen 229 DGSL 232 (239)
T ss_pred CCCc
Confidence 7643
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=92.56 E-value=0.57 Score=47.02 Aligned_cols=95 Identities=16% Similarity=0.094 Sum_probs=54.8
Q ss_pred ceEEecCCCCC---CCCHHHH---HHHHHhCCCCeEEEec--CChhhhhhhhcCCceEEEEeccch---hHHH-------
Q 012660 28 IGINYGKLGSN---LPSSYQS---IESIKFLQAGSVKIYD--ANPEILKLLSGTDLKVSIMVQNHE---IIDI------- 89 (459)
Q Consensus 28 ~GvnYg~~~~n---lps~~~v---v~llks~~~~~VRlY~--~d~~vL~A~~~tgi~v~vGv~n~~---l~~~------- 89 (459)
.|||+...... .++.+++ +++||+.|++.||+.. .++..+.++-..||-|+.-++... ....
T Consensus 18 ~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~ 97 (298)
T PF02836_consen 18 RGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDA 97 (298)
T ss_dssp EEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTT
T ss_pred EEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccCC
Confidence 59998875432 2445544 5677999999999963 457899999999999998876510 0000
Q ss_pred --hhhHHHHHHHHHhhccccCCCceEEEEEecccc
Q 012660 90 --ASKQKVADQWVHDNVLSFYPETMIRFILVGNEI 122 (459)
Q Consensus 90 --a~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNEv 122 (459)
....+.+.+.+++.|..+.-.-.|..=.+|||.
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 98 DDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 011223344455555555433457788899999
No 13
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=78.02 E-value=8.8 Score=39.89 Aligned_cols=103 Identities=10% Similarity=0.016 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCCeEEEecC-------Ch---------hhhhhhhcCCceEEEEeccchhHHH----------------
Q 012660 42 SYQSIESIKFLQAGSVKIYDA-------NP---------EILKLLSGTDLKVSIMVQNHEIIDI---------------- 89 (459)
Q Consensus 42 ~~~vv~llks~~~~~VRlY~~-------d~---------~vL~A~~~tgi~v~vGv~n~~l~~~---------------- 89 (459)
-++.+++||..|++.|||-.. .+ .+|..++..||+|+|+++....|.-
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 355678889999999998421 11 4788889999999999953211100
Q ss_pred ----------h-hh---HHHHHHHHHhhccccCCCceEEEEEecccccc-CCchhhhhhHHHHHHHHHHHHH
Q 012660 90 ----------A-SK---QKVADQWVHDNVLSFYPETMIRFILVGNEILS-QSSEEYKQIWKNLVPAMHRIKK 146 (459)
Q Consensus 90 ----------a-~~---~~~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~-~~~~~~~~~~~~Lv~am~~v~~ 146 (459)
. .+ ...+.+.+++-+..|-....|.++-|.||.-. ..++ ......-...|++=+.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~--~~~~~~f~~wLk~kY~ 161 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYS--PACQAAFRQWLKEKYG 161 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--S--HHHHHHHHHHHHHHHS
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCC--hHHHHHHHHHHHHHhC
Confidence 0 01 23455556655556655567999999999766 3332 1223334444444444
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=76.98 E-value=1.3 Score=47.47 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=39.2
Q ss_pred CCCceEEEeecCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEEEeccCCCCCCCCCC
Q 012660 261 YSDIRLAISETGWPNAGDFDQIGAN-----IYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDENQKTGPGTE 335 (459)
Q Consensus 261 ~~~~~vvVsETGWPS~G~~~~~~as-----~~na~~y~~~li~~~~s~~~~GTp~rp~~~~~~yiF~lFDe~~K~G~~~E 335 (459)
|++++|+|+|.|++....... +.- ++--+.+++.+.+.+.. |-+. .-+|..++.| ++--+.+..
T Consensus 353 Y~~~pI~ITENG~~~~~~~~~-~~v~D~~Ri~yl~~hl~~v~~Ai~d----Gv~V-----~GY~~WSl~D-n~Ew~~Gy~ 421 (455)
T PF00232_consen 353 YGNPPIYITENGIGDPDEVDD-GKVDDDYRIDYLQDHLNQVLKAIED----GVNV-----RGYFAWSLLD-NFEWAEGYK 421 (455)
T ss_dssp HTSSEEEEEEE---EETTCTT-SHBSHHHHHHHHHHHHHHHHHHHHT----T-EE-----EEEEEETSB----BGGGGGG
T ss_pred cCCCcEEEecccccccccccc-cCcCcHHHHHHHHHHHHHHHhhhcc----CCCe-----eeEeeecccc-ccccccCcc
Confidence 678999999999988765322 111 12234455555555533 3322 3567778888 343223478
Q ss_pred ceeeeecCC
Q 012660 336 RHWGMLHGN 344 (459)
Q Consensus 336 ~~wGlf~~d 344 (459)
+.|||++-|
T Consensus 422 ~rfGl~~VD 430 (455)
T PF00232_consen 422 KRFGLVYVD 430 (455)
T ss_dssp SE--SEEEE
T ss_pred CccCceEEc
Confidence 999999988
No 15
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=76.05 E-value=7.4 Score=40.47 Aligned_cols=97 Identities=12% Similarity=0.183 Sum_probs=58.3
Q ss_pred CCCeEEEecC-ChhhhhhhhcCCceEEEEeccchhHHHhhhHHHHHHHHHhhccccCCCceEEEEEeccccccCCchhhh
Q 012660 53 QAGSVKIYDA-NPEILKLLSGTDLKVSIMVQNHEIIDIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYK 131 (459)
Q Consensus 53 ~~~~VRlY~~-d~~vL~A~~~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~ 131 (459)
.++.|-+|+. |++++..+...|++|++..... .+.+ .+.+..++++++ +..+...-.+.+|-+==|-.... +.
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~s-iv~~~~~~gfDGIdIDwE~p~~~---~~ 128 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQ-KVELAKSQFMDGINIDIEQPITK---GS 128 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHH-HHHHHHHhCCCeEEEcccCCCCC---Cc
Confidence 4788888864 7799999999999999864321 2222 233333344443 33333333455565544433221 11
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCc
Q 012660 132 QIWKNLVPAMHRIKKCLNAHNIHN 155 (459)
Q Consensus 132 ~~~~~Lv~am~~v~~aL~~~gl~~ 155 (459)
.....++..|+++|++|.+.+.+.
T Consensus 129 ~d~~~~t~llkelr~~l~~~~~~~ 152 (358)
T cd02875 129 PEYYALTELVKETTKAFKKENPGY 152 (358)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCc
Confidence 224678899999999999876433
No 16
>PRK09936 hypothetical protein; Provisional
Probab=69.04 E-value=33 Score=34.86 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=41.7
Q ss_pred ceEEecCCCCC-CCCHHHHHH---HHHhCCCCeEEE-e----cCC--------hhhhhhhhcCCceEEEEeccch
Q 012660 28 IGINYGKLGSN-LPSSYQSIE---SIKFLQAGSVKI-Y----DAN--------PEILKLLSGTDLKVSIMVQNHE 85 (459)
Q Consensus 28 ~GvnYg~~~~n-lps~~~vv~---llks~~~~~VRl-Y----~~d--------~~vL~A~~~tgi~v~vGv~n~~ 85 (459)
-|+=|-+...| --++++--+ .++..|++.+=+ | +.| ...|+++++.||+|.||++-|.
T Consensus 22 ~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 22 KGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred ccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 47779999888 456766554 556788876644 2 222 2678899999999999998653
No 17
>TIGR03356 BGL beta-galactosidase.
Probab=67.41 E-value=11 Score=40.32 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCeEEEec------------CCh-------hhhhhhhcCCceEEEEecc
Q 012660 43 YQSIESIKFLQAGSVKIYD------------ANP-------EILKLLSGTDLKVSIMVQN 83 (459)
Q Consensus 43 ~~vv~llks~~~~~VRlY~------------~d~-------~vL~A~~~tgi~v~vGv~n 83 (459)
++.+++|++.|++.+|+=- .|. ++|.++.+.||+++|.+.-
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H 116 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH 116 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc
Confidence 4668899999999988621 121 5788999999999999953
No 18
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=64.95 E-value=18 Score=27.68 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC-----hhhhhhhhcCCceEEEEecc
Q 012660 40 PSSYQSIESIKFLQAGSVKIYDAN-----PEILKLLSGTDLKVSIMVQN 83 (459)
Q Consensus 40 ps~~~vv~llks~~~~~VRlY~~d-----~~vL~A~~~tgi~v~vGv~n 83 (459)
-++++.++.++++|++.|=+=|-+ +...+.++..||+++.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 367899999999999999887776 35566677899999999863
No 19
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=64.09 E-value=8.1 Score=35.87 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=27.6
Q ss_pred HHHHHHhCCCCeEEEecCChhhhhhhhcCCceEEEEec
Q 012660 45 SIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQ 82 (459)
Q Consensus 45 vv~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~vGv~ 82 (459)
-+|.|+..|+++||+.+.+|.-+.++.+.||+|.=-||
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 47899999999999999999999999999999975444
No 20
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=57.44 E-value=30 Score=37.38 Aligned_cols=46 Identities=7% Similarity=0.204 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCCeEEE-------e--c---CCh-------hhhhhhhcCCceEEEEeccchhH
Q 012660 42 SYQSIESIKFLQAGSVKI-------Y--D---ANP-------EILKLLSGTDLKVSIMVQNHEII 87 (459)
Q Consensus 42 ~~~vv~llks~~~~~VRl-------Y--~---~d~-------~vL~A~~~tgi~v~vGv~n~~l~ 87 (459)
-++.++|||+.|++.-|+ + + .|+ +++.++.+.||+-+|.+.--++|
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 367789999999887775 2 1 132 58899999999999999754444
No 21
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=57.00 E-value=13 Score=35.35 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=30.8
Q ss_pred HHHHHhCCCCeEEEecCChhhhhhhhcCCceEE
Q 012660 46 IESIKFLQAGSVKIYDANPEILKLLSGTDLKVS 78 (459)
Q Consensus 46 v~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~ 78 (459)
+|.|+..|+++||+...++.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999999888889999999997
No 22
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=56.67 E-value=14 Score=35.10 Aligned_cols=33 Identities=15% Similarity=0.375 Sum_probs=30.6
Q ss_pred HHHHHhCCCCeEEEecCChhhhhhhhcCCceEE
Q 012660 46 IESIKFLQAGSVKIYDANPEILKLLSGTDLKVS 78 (459)
Q Consensus 46 v~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~ 78 (459)
+|.|+..|+++||+...++.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998888889999999987
No 23
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=55.85 E-value=95 Score=31.07 Aligned_cols=142 Identities=12% Similarity=0.116 Sum_probs=70.9
Q ss_pred CCCCCCHHHHHHHHHhCCCCeEEEecCC--h-----hhh---hhhhcCCceEEEEeccchh---HHHhhhHHHHHHHHHh
Q 012660 36 GSNLPSSYQSIESIKFLQAGSVKIYDAN--P-----EIL---KLLSGTDLKVSIMVQNHEI---IDIASKQKVADQWVHD 102 (459)
Q Consensus 36 ~~nlps~~~vv~llks~~~~~VRlY~~d--~-----~vL---~A~~~tgi~v~vGv~n~~l---~~~a~~~~~A~~wv~~ 102 (459)
+-+.++|.++.+.|+..|+++|-+-.+. | .++ ..++..--++.+|-|-=.. .+-..+.....+-+.+
T Consensus 54 g~~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~ 133 (262)
T PF06180_consen 54 GIKIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAE 133 (262)
T ss_dssp T-----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHH
Confidence 3357899999999999999999998775 1 233 3444445689999873110 0111233333334444
Q ss_pred hccccCCCceEEEEEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcc
Q 012660 103 NVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDI 182 (459)
Q Consensus 103 ~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~ 182 (459)
.+..--++..+..+-=||+-. .. ..-..++..|++.++.++-|+|.+. +| +
T Consensus 134 ~~~~~~~~~a~vlmGHGt~h~----------an---~~Y~~l~~~l~~~~~~~v~vgtvEG-------~P--------~- 184 (262)
T PF06180_consen 134 EFPKKRKDEAVVLMGHGTPHP----------AN---AAYSALQAMLKKHGYPNVFVGTVEG-------YP--------S- 184 (262)
T ss_dssp CS-TT-TTEEEEEEE---SCH----------HH---HHHHHHHHHHHCCT-TTEEEEETTS-------SS--------B-
T ss_pred hccccCCCCEEEEEeCCCCCC----------cc---HHHHHHHHHHHhCCCCeEEEEEeCC-------CC--------C-
Confidence 433222345555555555431 11 2234456778888887799999753 33 1
Q ss_pred hhhhhHHHHHHHhhcCCcccccccccccc
Q 012660 183 SASVMEPLLQFLNRTKSFFFLDVYPYFAW 211 (459)
Q Consensus 183 ~~~~~~~~ldfL~~~~sp~~vNiyPyf~~ 211 (459)
+..++..|.+.+- =-|.+.||.--
T Consensus 185 ----~~~vi~~L~~~g~-k~V~L~PlMlV 208 (262)
T PF06180_consen 185 ----LEDVIARLKKKGI-KKVHLIPLMLV 208 (262)
T ss_dssp ----HHHHHHHHHHHT--SEEEEEEESSS
T ss_pred ----HHHHHHHHHhcCC-CeEEEEecccc
Confidence 3455566655431 13788888753
No 24
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=51.47 E-value=59 Score=33.43 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=41.9
Q ss_pred cCCceEEEEec--cc---hhHHHhhhHHHHHHHHHhhccccCCCceEEEEEeccccccCCchhhhhhHHHHHHHHHHHHH
Q 012660 72 GTDLKVSIMVQ--NH---EIIDIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKK 146 (459)
Q Consensus 72 ~tgi~v~vGv~--n~---~l~~~a~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~ 146 (459)
+.++||++.|. +. ....++++.+..+++++ +|..++..-.+.+|-+==|..... .+.......++..|+.+|+
T Consensus 68 ~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~p~~~-~~~~~d~~~~~~ll~~lr~ 145 (362)
T cd02872 68 NPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIK-SAIAFLRKYGFDGLDLDWEYPGQR-GGPPEDKENFVTLLKELRE 145 (362)
T ss_pred CCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHH-HHHHHHHHcCCCCeeeeeeccccC-CCCHHHHHHHHHHHHHHHH
Confidence 36899998884 22 23455555443333333 233333222344554433332210 0011235678999999999
Q ss_pred HHHhCC
Q 012660 147 CLNAHN 152 (459)
Q Consensus 147 aL~~~g 152 (459)
+|.+.+
T Consensus 146 ~l~~~~ 151 (362)
T cd02872 146 AFEPEA 151 (362)
T ss_pred HHHhhC
Confidence 999873
No 25
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=50.88 E-value=84 Score=32.43 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=49.5
Q ss_pred CcceEEecCCCCCCCCHHHHHHHHHhCCCCeEEEecCChhhhhhhhcCCceEEEEeccchhHHHhhhHHHHHHHHHhhcc
Q 012660 26 DKIGINYGKLGSNLPSSYQSIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQNHEIIDIASKQKVADQWVHDNVL 105 (459)
Q Consensus 26 ~~~GvnYg~~~~nlps~~~vv~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~ 105 (459)
..+|||.-...++ |..++.++.+...+.+.|=+..-+|..++.++..|++|+.-|+. ...|+.+++..+
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~Ga- 124 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENGA- 124 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcCC-
Confidence 3578887443322 33345566666666777766555666678888999999988874 234455555433
Q ss_pred ccCCCceEEEEEecccc
Q 012660 106 SFYPETMIRFILVGNEI 122 (459)
Q Consensus 106 ~~~~~~~I~~I~VGNEv 122 (459)
+. -|+-|.|.
T Consensus 125 -----D~--vVaqG~EA 134 (320)
T cd04743 125 -----RK--FIFEGREC 134 (320)
T ss_pred -----CE--EEEecCcC
Confidence 22 27788886
No 26
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=50.31 E-value=17 Score=38.10 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=30.2
Q ss_pred HHHHHHhCCCCeEEEecCChhhhhhhhcCCceEE
Q 012660 45 SIESIKFLQAGSVKIYDANPEILKLLSGTDLKVS 78 (459)
Q Consensus 45 vv~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~ 78 (459)
-+|+|+..|+++|||. ++|.=+.++.+.||+|.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 3789999999999999 78988999999999997
No 27
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.26 E-value=60 Score=34.08 Aligned_cols=60 Identities=12% Similarity=0.267 Sum_probs=35.4
Q ss_pred cchhHHHHHHHHHHHHHHcCCCCceEEEeecCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHhcC
Q 012660 241 YTNLLDQMLDSVIFAMAKLGYSDIRLAISETGWPNAGDFDQ---IGANIYNAATYNRNLIKKMTSK 303 (459)
Q Consensus 241 Y~n~fda~~Dav~~A~~k~g~~~~~vvVsETGWPS~G~~~~---~~as~~na~~y~~~li~~~~s~ 303 (459)
|.|-|++-+--...-..-.|++.++|+.| |||.|.-.. .-.|..-++.-+.++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 44445544432222234457778888887 999997432 1245555566666777766543
No 28
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=48.64 E-value=48 Score=35.17 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhCCC
Q 012660 134 WKNLVPAMHRIKKCLNAHNI 153 (459)
Q Consensus 134 ~~~Lv~am~~v~~aL~~~gl 153 (459)
.+.++..|+.+|++|.+.++
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 168 KEQFTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHHHHhcccCc
Confidence 56788899999999987664
No 29
>PLN02998 beta-glucosidase
Probab=47.36 E-value=44 Score=36.51 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=43.9
Q ss_pred CCCceEEEeecCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEEEeccC-CCCCCCCCCcee
Q 012660 261 YSDIRLAISETGWPNAGDF-DQIGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDE-NQKTGPGTERHW 338 (459)
Q Consensus 261 ~~~~~vvVsETGWPS~G~~-~~~~as~~na~~y~~~li~~~~s~~~~GTp~rp~~~~~~yiF~lFDe-~~K~G~~~E~~w 338 (459)
|++.+|+|+|-|+....+. -...-=++--+.+++.+.+.+.. |-+. .-+|.-++.|- .|..| .++.|
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~d----Gv~V-----~GY~~WSl~DnfEW~~G--y~~Rf 458 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRK----GSDV-----KGYFQWSLMDVFELFGG--YERSF 458 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHc----CCCE-----EEEeeccchhhhchhcc--ccCcc
Confidence 5556899999999875310 00001123334555555555532 4332 34677788872 34444 88999
Q ss_pred eeecCCCC
Q 012660 339 GMLHGNGV 346 (459)
Q Consensus 339 Glf~~d~~ 346 (459)
||++-|..
T Consensus 459 GLv~VD~~ 466 (497)
T PLN02998 459 GLLYVDFK 466 (497)
T ss_pred ceEEECCC
Confidence 99988754
No 30
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=46.70 E-value=24 Score=33.43 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=30.6
Q ss_pred HHHHHhCCCCeEEEecCChhhhhhhhcCCceEE
Q 012660 46 IESIKFLQAGSVKIYDANPEILKLLSGTDLKVS 78 (459)
Q Consensus 46 v~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~ 78 (459)
+|.|+..|+++||+.+..+.-+.++.+.||+|+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998878889999999998
No 31
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=46.61 E-value=36 Score=36.51 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCCeEEEe--cCCh-------------h---hhhhhhcCCc-----eEEEEeccchhHHHhhhHHHHHHH
Q 012660 43 YQSIESIKFLQAGSVKIY--DANP-------------E---ILKLLSGTDL-----KVSIMVQNHEIIDIASKQKVADQW 99 (459)
Q Consensus 43 ~~vv~llks~~~~~VRlY--~~d~-------------~---vL~A~~~tgi-----~v~vGv~n~~l~~~a~~~~~A~~w 99 (459)
++.+++|+..|+++|-+= +.++ + .++.++..|+ .+|+|+|.+...++......+.+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l 231 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIAL 231 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhc
Confidence 466788888888876542 1221 2 3334444554 468899988777776555443321
Q ss_pred HHhhccccC----CCceEEEEEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCCCceEec
Q 012660 100 VHDNVLSFY----PETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNIHNIKVG 159 (459)
Q Consensus 100 v~~~v~~~~----~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~IkVs 159 (459)
=-+.|.-|. |...-..-.+|.+.+. .....+..++.+.+.|.++|+..+-++
T Consensus 232 ~p~~i~~y~l~~~p~~~~~~~~~~~~~lp--------~~~~~~~~~~~~~~~L~~~Gy~~~~~~ 287 (453)
T PRK13347 232 SPDRIAVFGYAHVPSRRKNQRLIDEAALP--------DAEERLRQARAVADRLLAAGYVPIGLD 287 (453)
T ss_pred CCCEEEEeccccccchhhHHhcCCccCCc--------CHHHHHHHHHHHHHHHHHCCCEEEecc
Confidence 111111110 0000000001222111 234566777888999999999655444
No 32
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=44.86 E-value=45 Score=33.57 Aligned_cols=83 Identities=10% Similarity=0.110 Sum_probs=51.1
Q ss_pred hhhhhhhhcCCceEEEEeccch--------hHHHhhhHHHHHHHHHhhccccCCCceEEEEEeccccccCCchhhhhhHH
Q 012660 64 PEILKLLSGTDLKVSIMVQNHE--------IIDIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWK 135 (459)
Q Consensus 64 ~~vL~A~~~tgi~v~vGv~n~~--------l~~~a~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~ 135 (459)
++++.+++..++||++.|.+.. ...+.++... ++-+.++|..+...-.+.+|-+-=|.+.. ....
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~-r~~fi~~iv~~l~~~~~DGidiDwE~~~~------~d~~ 120 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEA-RQRLINNILALAKKYGYDGVNIDFENVPP------EDRE 120 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHH-HHHHHHHHHHHHHHhCCCcEEEecccCCH------HHHH
Confidence 5788888888999999887532 2344444332 23233344444332345566665565432 2346
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 012660 136 NLVPAMHRIKKCLNAHNI 153 (459)
Q Consensus 136 ~Lv~am~~v~~aL~~~gl 153 (459)
.++..|+.+|++|.+.|+
T Consensus 121 ~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 121 AYTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHHhhhcCc
Confidence 788999999999987664
No 33
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=44.59 E-value=1.6e+02 Score=35.15 Aligned_cols=96 Identities=16% Similarity=0.037 Sum_probs=56.9
Q ss_pred ceEEecCCCC---CCCCHHHH---HHHHHhCCCCeEEEec--CChhhhhhhhcCCceEEEEeccchh-----HHHhhhH-
Q 012660 28 IGINYGKLGS---NLPSSYQS---IESIKFLQAGSVKIYD--ANPEILKLLSGTDLKVSIMVQNHEI-----IDIASKQ- 93 (459)
Q Consensus 28 ~GvnYg~~~~---nlps~~~v---v~llks~~~~~VRlY~--~d~~vL~A~~~tgi~v~vGv~n~~l-----~~~a~~~- 93 (459)
.|||+-.... .-.+++++ ++++|+.|++.||+-. .++..++.+-..||=|+--++.+.. ..+..++
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 4888754322 12455554 5677999999999943 3568899999999988866542100 0011111
Q ss_pred --HHHHHHHHhhccccCCCceEEEEEeccccc
Q 012660 94 --KVADQWVHDNVLSFYPETMIRFILVGNEIL 123 (459)
Q Consensus 94 --~~A~~wv~~~v~~~~~~~~I~~I~VGNEvl 123 (459)
....+-+++.|....-...|..=++|||.-
T Consensus 433 ~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 122222344444443335688889999974
No 34
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=43.53 E-value=25 Score=36.93 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=31.2
Q ss_pred HHHHHhCCCCeEEEecCChhhhhhhhcCCceEEEEe
Q 012660 46 IESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMV 81 (459)
Q Consensus 46 v~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~vGv 81 (459)
+|.|+..|+++|||.. +|.-+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 7899999999999999 8999999999999997333
No 35
>PLN02814 beta-glucosidase
Probab=43.50 E-value=60 Score=35.55 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=43.5
Q ss_pred CCCceEEEeecCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEEEeccC-CCCCCCCCCcee
Q 012660 261 YSDIRLAISETGWPNAGDFD-QIGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDE-NQKTGPGTERHW 338 (459)
Q Consensus 261 ~~~~~vvVsETGWPS~G~~~-~~~as~~na~~y~~~li~~~~s~~~~GTp~rp~~~~~~yiF~lFDe-~~K~G~~~E~~w 338 (459)
|++.+|+|+|-|+....+.. ...-=.+--+.+++.+.+.+.. |-|. .-+|.-++.|- .|..| .++.|
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~d----Gv~V-----~GY~~WSllDnfEW~~G--y~~Rf 453 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKN----GSDT-----RGYFVWSMIDLYELLGG--YTTSF 453 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHc----CCCE-----EEEeeccchhhhchhcc--ccCcc
Confidence 55668999999997542110 0001123334444545454432 4433 34677788872 34444 89999
Q ss_pred eeecCCCC
Q 012660 339 GMLHGNGV 346 (459)
Q Consensus 339 Glf~~d~~ 346 (459)
||++-|..
T Consensus 454 GLvyVD~~ 461 (504)
T PLN02814 454 GMYYVNFS 461 (504)
T ss_pred ceEEECCC
Confidence 99988764
No 36
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=43.09 E-value=1.2e+02 Score=31.88 Aligned_cols=59 Identities=19% Similarity=0.478 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhhhHHHHHHHhhcCCccccccccccc
Q 012660 133 IWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYPYFA 210 (459)
Q Consensus 133 ~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~ 210 (459)
..++...+++.+|+.. . +|.+++.. +- ++| | |- ...+...++|+.+.+ +-.+++|||--
T Consensus 271 ~~~~~~~~v~~l~~~~--~---gi~i~~~~----Iv-G~P---g----ET-~ed~~~tl~~i~~~~-~~~~~~~~~sp 329 (414)
T TIGR01579 271 TRDDFLKLVNKLRSVR--P---DYAFGTDI----IV-GFP---G----ES-EEDFQETLRMVKEIE-FSHLHIFPYSA 329 (414)
T ss_pred CHHHHHHHHHHHHHhC--C---CCeeeeeE----EE-ECC---C----CC-HHHHHHHHHHHHhCC-CCEEEeeecCC
Confidence 3566777777777642 2 24555432 21 244 1 21 256778999998765 44567777643
No 37
>PRK09989 hypothetical protein; Provisional
Probab=42.90 E-value=1.8e+02 Score=28.22 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=39.8
Q ss_pred cceEEecCCCCCCCCHHHHHHHHHhCCCCeEEEec---CCh-hhhhhhhcCCceEEE
Q 012660 27 KIGINYGKLGSNLPSSYQSIESIKFLQAGSVKIYD---ANP-EILKLLSGTDLKVSI 79 (459)
Q Consensus 27 ~~GvnYg~~~~nlps~~~vv~llks~~~~~VRlY~---~d~-~vL~A~~~tgi~v~v 79 (459)
...+|...+-.++ +-.+.++.+++.|++.|-+.. -+. ++.+.++++||+|..
T Consensus 3 ~~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 3 RFAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred ceeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 3567888877776 456889999999999999843 333 566778899999886
No 38
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=41.63 E-value=67 Score=30.63 Aligned_cols=52 Identities=13% Similarity=0.284 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhhh-HHHHHHHhhcCCcccccc
Q 012660 139 PAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVM-EPLLQFLNRTKSFFFLDV 205 (459)
Q Consensus 139 ~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~-~~~ldfL~~~~sp~~vNi 205 (459)
.+++.+.+.+...|+.+||+.+..... .| .+ +.. .++++.+.+.+-|+++++
T Consensus 85 ~~~~~l~~~~~~~g~~Gv~l~~~~~~~------~~------~~---~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 85 DAVEELERALQELGFRGVKLHPDLGGF------DP------DD---PRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHTTTESEEEEESSETTC------CT------TS---GHCHHHHHHHHHHHT-EEEEEE
T ss_pred hHHHHHHHhccccceeeeEecCCCCcc------cc------cc---HHHHHHHHHHHHhhccceeeec
Confidence 577888888889998888887743211 11 01 223 489999999998887764
No 39
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=41.10 E-value=2.1e+02 Score=29.62 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHH---hCCCCeEEEecCCh-------hhhhhhhcCCc-eEEEEeccchhHHHhhhHHHHHHHHHhhccc
Q 012660 38 NLPSSYQSIESIK---FLQAGSVKIYDANP-------EILKLLSGTDL-KVSIMVQNHEIIDIASKQKVADQWVHDNVLS 106 (459)
Q Consensus 38 nlps~~~vv~llk---s~~~~~VRlY~~d~-------~vL~A~~~tgi-~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~ 106 (459)
++.|++++..+++ ..|+.+|||=+-.| +++..++..++ +|.++-.--.++..| .+|-...+.
T Consensus 41 ~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a------~~Lk~AGl~- 113 (322)
T COG2896 41 ELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRA------ADLKEAGLD- 113 (322)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHH------HHHHHcCCc-
Confidence 5668888866554 57899999998765 46677776644 345543222344443 333332221
Q ss_pred cCCCceEEEEEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhh
Q 012660 107 FYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASV 186 (459)
Q Consensus 107 ~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~ 186 (459)
..||.-=+.=.|.+ +. .+-...+-.-|+-|.+|+ ++|+..|||.|..- . |.. +..
T Consensus 114 ---rVNVSLDsld~e~f-~~----IT~~~~~~~Vl~GI~~A~-~~Gl~pVKlN~Vv~----k-------gvN-----d~e 168 (322)
T COG2896 114 ---RVNVSLDSLDPEKF-RK----ITGRDRLDRVLEGIDAAV-EAGLTPVKLNTVLM----K-------GVN-----DDE 168 (322)
T ss_pred ---EEEeecccCCHHHH-HH----HhCCCcHHHHHHHHHHHH-HcCCCceEEEEEEe----c-------CCC-----HHH
Confidence 12332211111111 10 001122344555565554 57998899998642 1 111 245
Q ss_pred hHHHHHHHhhcC
Q 012660 187 MEPLLQFLNRTK 198 (459)
Q Consensus 187 ~~~~ldfL~~~~ 198 (459)
+.++++|....+
T Consensus 169 i~~l~e~~~~~~ 180 (322)
T COG2896 169 IEDLLEFAKERG 180 (322)
T ss_pred HHHHHHHHhhcC
Confidence 778889886544
No 40
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=40.02 E-value=33 Score=35.66 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=31.0
Q ss_pred HHHHHHhCCCCeEEEecCC-hhhhhhhhcCCceEE
Q 012660 45 SIESIKFLQAGSVKIYDAN-PEILKLLSGTDLKVS 78 (459)
Q Consensus 45 vv~llks~~~~~VRlY~~d-~~vL~A~~~tgi~v~ 78 (459)
..|.|+..|+++|||...+ |.-+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4789999999999999999 888889999999986
No 41
>PLN02849 beta-glucosidase
Probab=39.93 E-value=79 Score=34.63 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=43.9
Q ss_pred CCCceEEEeecCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEEEeccCCCCCCCCCCce
Q 012660 261 YSDIRLAISETGWPNAGDFDQI---GANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYDENQKTGPGTERH 337 (459)
Q Consensus 261 ~~~~~vvVsETGWPS~G~~~~~---~as~~na~~y~~~li~~~~s~~~~GTp~rp~~~~~~yiF~lFDe~~K~G~~~E~~ 337 (459)
|++.+|+|+|-|++......+. .-=++--+.+++.+.+.+.. |-+. .-+|..++.| ++.-..+.++.
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~d----Gv~V-----~GY~~WSl~D-nfEW~~Gy~~R 452 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRN----GSDT-----RGYFVWSFMD-LYELLKGYEFS 452 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHc----CCCE-----EEEeeccchh-hhchhccccCc
Confidence 5566899999999865421110 01123334455555554432 4332 3467778887 33322248899
Q ss_pred eeeecCCCC
Q 012660 338 WGMLHGNGV 346 (459)
Q Consensus 338 wGlf~~d~~ 346 (459)
|||++-|..
T Consensus 453 fGLi~VD~~ 461 (503)
T PLN02849 453 FGLYSVNFS 461 (503)
T ss_pred cceEEECCC
Confidence 999988764
No 42
>PRK08815 GTP cyclohydrolase; Provisional
Probab=38.73 E-value=35 Score=35.98 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=32.7
Q ss_pred HHHHHhCCCCeEEEecCChhhhhhhhcCCceEEEEec
Q 012660 46 IESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQ 82 (459)
Q Consensus 46 v~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~vGv~ 82 (459)
+|.|+..|+++||+...++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999888999999999974343
No 43
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=38.54 E-value=3e+02 Score=27.37 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhCCCCeEEEecCChhhhhhhhcCCceEEEEeccchhHHHhhhHHHHHHHHHhhccccCCCceEEEEEecc
Q 012660 41 SSYQSIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQNHEIIDIASKQKVADQWVHDNVLSFYPETMIRFILVGN 120 (459)
Q Consensus 41 s~~~vv~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~~~~~~~I~~I~VGN 120 (459)
.+.|++.+|.++||+.-|. +-+..|.. |-|.. ++..+|..|++.+-.|.-+.+++.-|.=.+
T Consensus 32 eANemlAlL~~~gI~A~K~---------~~~~g~~~--l~Ve~-------~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~d 93 (246)
T COG4669 32 EANEMLALLMSHGINAEKK---------ADKDGGTS--LLVEE-------SDFAEAVEILNQNGLPRKKFTTLGDIFPKD 93 (246)
T ss_pred HHHHHHHHHHHcCCcceee---------ccCCCceE--EEEcH-------HHHHHHHHHHHhcCCCCCCCCcHHHhCCcc
Confidence 4578899999999988887 21223333 44442 245678899999877764445554444444
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHHHHHHhC
Q 012660 121 EILSQSSEEYKQIWKNLVPAMHRIKKCLNAH 151 (459)
Q Consensus 121 Evl~~~~~~~~~~~~~Lv~am~~v~~aL~~~ 151 (459)
--+.+. ..+-+...-..=|++-+.|+..
T Consensus 94 gLVsSP---~eEkaR~~~~~eQ~le~tLs~m 121 (246)
T COG4669 94 GLVSSP---TEEKARLNYAKEQQLEQTLSKM 121 (246)
T ss_pred cccCCc---HHHHHHHHHHHHHHHHHHHHhc
Confidence 444333 1111222222334556666554
No 44
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=38.48 E-value=35 Score=36.07 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=33.1
Q ss_pred HHHHHhCCCCeEEEecCChhhhhhhhcCCceEEEEec
Q 012660 46 IESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQ 82 (459)
Q Consensus 46 v~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~vGv~ 82 (459)
+|.|+..|+++||+...+|.-+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999999999999999984444
No 45
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.30 E-value=2.1e+02 Score=30.50 Aligned_cols=57 Identities=14% Similarity=0.322 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhhhHHHHHHHhhcCCccccccccc
Q 012660 133 IWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYPY 208 (459)
Q Consensus 133 ~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPy 208 (459)
..++++.+++.+|++. . ++.++|.. +. ++| | +- ..-+...++|+.+.+ +-.+++|+|
T Consensus 270 ~~~~~~~~v~~lr~~~----~-~i~i~~d~----Iv-G~P---g----Et-~ed~~~tl~~i~~l~-~~~i~~f~y 326 (440)
T PRK14334 270 RREKYLERIAEIREAL----P-DVVLSTDI----IV-GFP---G----ET-EEDFQETLSLYDEVG-YDSAYMFIY 326 (440)
T ss_pred CHHHHHHHHHHHHHhC----C-CcEEEEeE----EE-ECC---C----CC-HHHHHHHHHHHHhcC-CCEeeeeEe
Confidence 3566777888877653 1 24444432 22 244 1 11 255678899987754 334666664
No 46
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.61 E-value=1.1e+02 Score=32.96 Aligned_cols=130 Identities=12% Similarity=0.264 Sum_probs=73.0
Q ss_pred CcceEEecCCCCCCCC-HHHHHHHHH----hCCCCeEEEecCCh-----hhhhhhhcC-CceEEEEeccchhHHHhhhHH
Q 012660 26 DKIGINYGKLGSNLPS-SYQSIESIK----FLQAGSVKIYDANP-----EILKLLSGT-DLKVSIMVQNHEIIDIASKQK 94 (459)
Q Consensus 26 ~~~GvnYg~~~~nlps-~~~vv~llk----s~~~~~VRlY~~d~-----~vL~A~~~t-gi~v~vGv~n~~l~~~a~~~~ 94 (459)
.-+|.|-+.||.|++. .....+||+ -.|+.+||+=..+| ++++|++.+ .+-=.+-+|.. +-+..+
T Consensus 194 ~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQ---sGsd~I- 269 (437)
T COG0621 194 VLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQ---SGSDRI- 269 (437)
T ss_pred EEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccc---cCCHHH-
Confidence 3569999999988863 223344443 25788999987765 677777764 22223333321 111100
Q ss_pred HHHHHHHhhccccCCCceEEEEEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCC
Q 012660 95 VADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPS 174 (459)
Q Consensus 95 ~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS 174 (459)
++ .+.|+| +.++.+.-++.+|++.... -++|. ++. +||
T Consensus 270 -----Lk--------------------~M~R~y-----t~e~~~~~i~k~R~~~Pd~-----~i~tD----iIV-GFP-- 307 (437)
T COG0621 270 -----LK--------------------RMKRGY-----TVEEYLEIIEKLRAARPDI-----AISTD----IIV-GFP-- 307 (437)
T ss_pred -----HH--------------------HhCCCc-----CHHHHHHHHHHHHHhCCCc-----eEecc----EEE-ECC--
Confidence 00 123442 4677788888888877543 44443 222 365
Q ss_pred CccccCcchhhhhHHHHHHHhhcCCccccccccc
Q 012660 175 NGTFRSDISASVMEPLLQFLNRTKSFFFLDVYPY 208 (459)
Q Consensus 175 ~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPy 208 (459)
|. . +.-....++|+.+.+ +=.+|+++|
T Consensus 308 -gE----T-eedFe~tl~lv~e~~-fd~~~~F~Y 334 (437)
T COG0621 308 -GE----T-EEDFEETLDLVEEVR-FDRLHVFKY 334 (437)
T ss_pred -CC----C-HHHHHHHHHHHHHhC-CCEEeeeec
Confidence 22 1 244567788886543 445788876
No 47
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.30 E-value=38 Score=36.01 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=32.6
Q ss_pred HHHHHHhCCCCeEEEecCChhhhhhhhcCCceEEEEe
Q 012660 45 SIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMV 81 (459)
Q Consensus 45 vv~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~vGv 81 (459)
.+|.|+..|+++||+...+|.=+.++.+.||+|.=-+
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v 374 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERV 374 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 3789999999999999999998999999999997333
No 48
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=37.24 E-value=38 Score=36.60 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=32.7
Q ss_pred HHHHHhCCCCeEEEecCChhhhhhhhcCCceEEEEec
Q 012660 46 IESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQ 82 (459)
Q Consensus 46 v~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~vGv~ 82 (459)
.|.|+..|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 7899999999999999999999999999999973333
No 49
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=37.06 E-value=3.2e+02 Score=26.42 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=36.7
Q ss_pred eEEecCCCCCCCCHHHHHHHHHhCCCCeEEEecC---Ch-hhhhhhhcCCceEEE
Q 012660 29 GINYGKLGSNLPSSYQSIESIKFLQAGSVKIYDA---NP-EILKLLSGTDLKVSI 79 (459)
Q Consensus 29 GvnYg~~~~nlps~~~vv~llks~~~~~VRlY~~---d~-~vL~A~~~tgi~v~v 79 (459)
-+|.+..-.++| .++.++.+++.|++.|-++.. ++ ++.+.++.+||++..
T Consensus 5 ~~~~~~~~~~~~-l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 5 SANLSMLFGEYD-FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred eeeeehhccCCC-HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 355555554554 567889999999999998764 33 566777899999975
No 50
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=36.74 E-value=63 Score=27.82 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCeEEEec--CC---hhhhhhhhcCCceEEE
Q 012660 43 YQSIESIKFLQAGSVKIYD--AN---PEILKLLSGTDLKVSI 79 (459)
Q Consensus 43 ~~vv~llks~~~~~VRlY~--~d---~~vL~A~~~tgi~v~v 79 (459)
+++.+.++.+|++.|+++= .. ..+|++++..||+|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 3455677789999999983 33 3689999999998653
No 51
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=36.72 E-value=70 Score=34.73 Aligned_cols=46 Identities=7% Similarity=0.121 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCCeEEE-------ec------CCh-------hhhhhhhcCCceEEEEeccchhH
Q 012660 42 SYQSIESIKFLQAGSVKI-------YD------ANP-------EILKLLSGTDLKVSIMVQNHEII 87 (459)
Q Consensus 42 ~~~vv~llks~~~~~VRl-------Y~------~d~-------~vL~A~~~tgi~v~vGv~n~~l~ 87 (459)
-++.+++||+.|++.-|+ += .|+ +++.+|.+.||+-+|.+.--++|
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 356789999998877764 31 132 58899999999999999744444
No 52
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=36.50 E-value=39 Score=37.38 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=33.6
Q ss_pred HHHHHHhCCCCeEEEecCChhhhhhhhcCCceEEEEec
Q 012660 45 SIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQ 82 (459)
Q Consensus 45 vv~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~vGv~ 82 (459)
.++.|+..|+++|||...+|.=+.++.+.||+|.==++
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 37899999999999999999999999999999984443
No 53
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.48 E-value=1.4e+02 Score=28.35 Aligned_cols=75 Identities=11% Similarity=0.067 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCeEEEecCCh---------hhhhhhhcCCceEEEE--eccchhHHHhhhHHHHHHHHHhhccccCCC
Q 012660 42 SYQSIESIKFLQAGSVKIYDANP---------EILKLLSGTDLKVSIM--VQNHEIIDIASKQKVADQWVHDNVLSFYPE 110 (459)
Q Consensus 42 ~~~vv~llks~~~~~VRlY~~d~---------~vL~A~~~tgi~v~vG--v~n~~l~~~a~~~~~A~~wv~~~v~~~~~~ 110 (459)
-..+++.|.++|.++|=+.+... ...++++..|+++.+- .+.....+.......+.+|++++
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------- 169 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL------- 169 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-------
Confidence 34556667777888776664331 2345667788876211 11111111222234566676543
Q ss_pred ceEEEEEeccccc
Q 012660 111 TMIRFILVGNEIL 123 (459)
Q Consensus 111 ~~I~~I~VGNEvl 123 (459)
..+++|++.|+.+
T Consensus 170 ~~~~ai~~~~d~~ 182 (265)
T cd01543 170 PKPVGIFACTDAR 182 (265)
T ss_pred CCCcEEEecChHH
Confidence 1255677766554
No 54
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=35.33 E-value=2.3e+02 Score=33.84 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=55.9
Q ss_pred ceEEecCCCCC---CCCHHHH---HHHHHhCCCCeEEEec--CChhhhhhhhcCCceEEEEeccch--------hHHHhh
Q 012660 28 IGINYGKLGSN---LPSSYQS---IESIKFLQAGSVKIYD--ANPEILKLLSGTDLKVSIMVQNHE--------IIDIAS 91 (459)
Q Consensus 28 ~GvnYg~~~~n---lps~~~v---v~llks~~~~~VRlY~--~d~~vL~A~~~tgi~v~vGv~n~~--------l~~~a~ 91 (459)
.|||+-..... ..+++.+ +++||+.|++.||+-. .++..+.++-..||=|+.-++.+. ...+..
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 48886433211 2344443 6678999999999853 245789999999998887542110 000111
Q ss_pred hH---HHHHHHHHhhccccCCCceEEEEEecccccc
Q 012660 92 KQ---KVADQWVHDNVLSFYPETMIRFILVGNEILS 124 (459)
Q Consensus 92 ~~---~~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~ 124 (459)
++ ....+-+++.|....-...|..=++|||.-.
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 11 1112234444555433356778889999743
No 55
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=35.18 E-value=1e+02 Score=26.72 Aligned_cols=121 Identities=12% Similarity=0.142 Sum_probs=60.3
Q ss_pred HHHHHhCCCCeEEEecCCh----------hhhhhhhcCCceEEEEeccchhHHHhhhHHHHHHHHHhhccccCCCceEEE
Q 012660 46 IESIKFLQAGSVKIYDANP----------EILKLLSGTDLKVSIMVQNHEIIDIASKQKVADQWVHDNVLSFYPETMIRF 115 (459)
Q Consensus 46 v~llks~~~~~VRlY~~d~----------~vL~A~~~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~~~~~~~I~~ 115 (459)
++-|.++|.++|-+..... ...+++++.|++...-.......... .......|+++. .| ++
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~p----da 71 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL----RP----DA 71 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC----SS----SE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC----CC----cE
Confidence 3456667889998887432 25578888999865544322111111 111223377554 12 37
Q ss_pred EEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCC--Cc-eEeccccccccccccCCCCCccccCcchhhhhHHHHH
Q 012660 116 ILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNI--HN-IKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQ 192 (459)
Q Consensus 116 I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl--~~-IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ld 192 (459)
|+++|+.+..+ +..+|.+.|+ .+ |.|-+-+........+ |...+++.+.. ..-+.+++
T Consensus 72 ii~~~~~~a~~-----------------~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~-p~it~i~~~~~-~~g~~a~~ 132 (160)
T PF13377_consen 72 IICSNDRLALG-----------------VLRALRELGIRVPQDISVVSFDDSPLLEFFS-PPITTIDQDPR-EMGREAVE 132 (160)
T ss_dssp EEESSHHHHHH-----------------HHHHHHHTTSCTTTTSEEEEESSSGHHHCSS-STSEEEEE-HH-HHHHHHHH
T ss_pred EEEcCHHHHHH-----------------HHHHHHHcCCcccccccEEEecCcHHHHHHc-CCCceecCCHH-HHHHHHHH
Confidence 88877654322 2345566676 23 6666655433333223 34444544432 33334444
Q ss_pred HH
Q 012660 193 FL 194 (459)
Q Consensus 193 fL 194 (459)
.|
T Consensus 133 ~l 134 (160)
T PF13377_consen 133 LL 134 (160)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 56
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=34.69 E-value=1e+02 Score=33.90 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=48.6
Q ss_pred CCCCceEEEeecCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEEEecc-CCCCCC
Q 012660 260 GYSDIRLAISETGWPNAGDFDQ-------IGANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYD-ENQKTG 331 (459)
Q Consensus 260 g~~~~~vvVsETGWPS~G~~~~-------~~as~~na~~y~~~li~~~~s~~~~GTp~rp~~~~~~yiF~lFD-e~~K~G 331 (459)
.|+|.+|.|+|-|-+...+... ...=.+..+.|++.+.+.+... |. ...-+|..+|.| =.|..|
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~d---gv-----nv~GYf~WSLmDnfEw~~G 475 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKED---GV-----NVKGYFVWSLLDNFEWLDG 475 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhc---CC-----ceeeEEEeEcccchhhhcC
Confidence 4889999999999888754321 1123455667777777766422 21 123588889887 345555
Q ss_pred CCCCceeeeecC
Q 012660 332 PGTERHWGMLHG 343 (459)
Q Consensus 332 ~~~E~~wGlf~~ 343 (459)
..-.||||+-
T Consensus 476 --y~~RFGlyyV 485 (524)
T KOG0626|consen 476 --YKVRFGLYYV 485 (524)
T ss_pred --cccccccEEE
Confidence 6688999984
No 57
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=34.43 E-value=68 Score=34.72 Aligned_cols=46 Identities=7% Similarity=0.129 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCCeEEE-------ecC-----Ch-------hhhhhhhcCCceEEEEeccchhH
Q 012660 42 SYQSIESIKFLQAGSVKI-------YDA-----NP-------EILKLLSGTDLKVSIMVQNHEII 87 (459)
Q Consensus 42 ~~~vv~llks~~~~~VRl-------Y~~-----d~-------~vL~A~~~tgi~v~vGv~n~~l~ 87 (459)
-++.++|||+.|++.-|+ +=. |+ +++.++.+.||+-+|.+.--++|
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 119 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTP 119 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 356789999988777664 311 22 58899999999999999754444
No 58
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.26 E-value=2.6e+02 Score=27.20 Aligned_cols=70 Identities=6% Similarity=-0.007 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCCh--------hhhhhhhc-CCceEEEEeccchhHHHhhhHHHHHHHHHhhccccCCC
Q 012660 40 PSSYQSIESIKFLQAGSVKIYDANP--------EILKLLSG-TDLKVSIMVQNHEIIDIASKQKVADQWVHDNVLSFYPE 110 (459)
Q Consensus 40 ps~~~vv~llks~~~~~VRlY~~d~--------~vL~A~~~-tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~~~~~ 110 (459)
.+|-++++.+++.|++.+=+.|.|. ++++.++. .-.+|.+|=.... .+.++.|+..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIrs-------~e~~~~~l~~-------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIRD-------IEKAKRLLSL-------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcCC-------HHHHHHHHHC--------
Confidence 3788999999989999999998873 56777665 4458888655322 2344555553
Q ss_pred ceEEEEEeccccccC
Q 012660 111 TMIRFILVGNEILSQ 125 (459)
Q Consensus 111 ~~I~~I~VGNEvl~~ 125 (459)
.+..|+||+|.+.+
T Consensus 95 -Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 -DVNALVFSTIVFTN 108 (232)
T ss_pred -CCCEEEECchhhCC
Confidence 23357899998865
No 59
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=33.81 E-value=1.8e+02 Score=30.68 Aligned_cols=135 Identities=16% Similarity=0.229 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhhhHHHHHHHhhcCCccccccccccccCC
Q 012660 134 WKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYPYFAWST 213 (459)
Q Consensus 134 ~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~~~ 213 (459)
.+++...++++|+. +|+++.-..-.-+...+. .-.|.++.- +-++.+++.|.+.+--++++++|+.....
T Consensus 42 ~~~v~~~i~~~~~~-------~iP~d~~~iD~~~~~~~~--~f~~d~~~F-Pd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 42 QDEVREVIDRYRSN-------GIPLDVIWIDDDYQDGYG--DFTWDPERF-PDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp HHHHHHHHHHHHHT-------T--EEEEEE-GGGSBTTB--TT-B-TTTT-TTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred HHHHHHHHHHHHHc-------CCCccceecccccccccc--ccccccccc-cchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 45566666666542 367666542222222111 011222111 45789999999999999999999876432
Q ss_pred CCCccCcchhhcccCCCccccCCCCcccchhHHHHHHHHHHHHHHcCC----CCceEEEeecCCCCCCCCCCCCCCHHHH
Q 012660 214 NPKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFAMAKLGY----SDIRLAISETGWPNAGDFDQIGANIYNA 289 (459)
Q Consensus 214 ~p~~i~l~yAlf~~~~~~~~d~~~~~~Y~n~fda~~Dav~~A~~k~g~----~~~~vvVsETGWPS~G~~~~~~as~~na 289 (459)
. +|..|+ .. .+.|+ ++-...+++. ||-.+.- ..-+-.++
T Consensus 112 ~------~~~~~~--------------------~~--------~~~~~~v~~~~g~~~~~~~-w~g~~~~--~Dftnp~a 154 (441)
T PF01055_consen 112 P------DYENYD--------------------EA--------KEKGYLVKNPDGSPYIGRV-WPGKGGF--IDFTNPEA 154 (441)
T ss_dssp T------B-HHHH--------------------HH--------HHTT-BEBCTTSSB-EEEE-TTEEEEE--B-TTSHHH
T ss_pred C------cchhhh--------------------hH--------hhcCceeecccCCcccccc-cCCcccc--cCCCChhH
Confidence 1 222222 11 11221 2235677777 8844321 12344568
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccEEEEEecc
Q 012660 290 ATYNRNLIKKMTSKPALGTPARPGSIIPTFIFSLYD 325 (459)
Q Consensus 290 ~~y~~~li~~~~s~~~~GTp~rp~~~~~~yiF~lFD 325 (459)
+.++++.++.+.+.. +++.++..+=+
T Consensus 155 ~~w~~~~~~~~~~~~----------Gvdg~w~D~~E 180 (441)
T PF01055_consen 155 RDWWKEQLKELLDDY----------GVDGWWLDFGE 180 (441)
T ss_dssp HHHHHHHHHHHHTTS----------T-SEEEEESTT
T ss_pred HHHHHHHHHHHHhcc----------CCceEEeecCC
Confidence 888877777776542 58888887633
No 60
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=33.80 E-value=74 Score=27.87 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCeEEEe--c--------CCh---hhhhhhhcCCceEEE
Q 012660 43 YQSIESIKFLQAGSVKIY--D--------ANP---EILKLLSGTDLKVSI 79 (459)
Q Consensus 43 ~~vv~llks~~~~~VRlY--~--------~d~---~vL~A~~~tgi~v~v 79 (459)
+++.+.++++|++.|+++ + +-+ .+|++++..||+|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 455667778999988887 3 333 689999999999753
No 61
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.76 E-value=4.6e+02 Score=27.81 Aligned_cols=58 Identities=10% Similarity=0.279 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhhhHHHHHHHhhcCCcccccccccc
Q 012660 133 IWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYPYF 209 (459)
Q Consensus 133 ~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf 209 (459)
..++...+++.+|+.+ .+|.|+|.. +- +|| | |- +..+...++|+.+.+ +-.+++++|-
T Consensus 273 ~~~~~~~~i~~lr~~~-----~~i~i~~d~----Iv-GfP---g----ET-~edf~~tl~fi~~~~-~~~~~~~~~s 330 (434)
T PRK14330 273 TREEYLELIEKIRSKV-----PDASISSDI----IV-GFP---T----ET-EEDFMETVDLVEKAQ-FERLNLAIYS 330 (434)
T ss_pred CHHHHHHHHHHHHHhC-----CCCEEEEEE----EE-ECC---C----CC-HHHHHHHHHHHHhcC-CCEEeeeecc
Confidence 3566777777777753 235566542 21 344 1 21 256788999998765 2345666554
No 62
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=33.08 E-value=3.9e+02 Score=24.61 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCCeEEE----------ecCC--------------hhhhhhhhcCCceEEEEeccc
Q 012660 44 QSIESIKFLQAGSVKI----------YDAN--------------PEILKLLSGTDLKVSIMVQNH 84 (459)
Q Consensus 44 ~vv~llks~~~~~VRl----------Y~~d--------------~~vL~A~~~tgi~v~vGv~n~ 84 (459)
+.++.||..||+.|=+ |.++ ..+|+++...||||.||++.+
T Consensus 24 ~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 3466778888877722 1121 147889899999999999843
No 63
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=33.04 E-value=1.2e+02 Score=31.21 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=36.1
Q ss_pred hhhhhh-hcCCceEEEEeccchhHHHhhhHHHHHHHHHhhccccC-----CCceEEEEEeccccccCCchhhhhhHHHHH
Q 012660 65 EILKLL-SGTDLKVSIMVQNHEIIDIASKQKVADQWVHDNVLSFY-----PETMIRFILVGNEILSQSSEEYKQIWKNLV 138 (459)
Q Consensus 65 ~vL~A~-~~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~~~-----~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv 138 (459)
+.|..| +.+|++|+.|+.--.-.....+....-.|=-+|-+.++ .+=+|.+-=.|||.-..+.. ....+.++.
T Consensus 112 d~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~-~~v~a~qya 190 (319)
T PF03662_consen 112 DELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVG-ASVSAEQYA 190 (319)
T ss_dssp HHHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSS-TT--HHHHH
T ss_pred HHHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCC-CccCHHHHH
Confidence 344444 47999999999621100101112334567666654442 23357777789996543210 112367788
Q ss_pred HHHHHHHHHHHhC
Q 012660 139 PAMHRIKKCLNAH 151 (459)
Q Consensus 139 ~am~~v~~aL~~~ 151 (459)
.....+|+.|++.
T Consensus 191 kD~~~Lr~il~~i 203 (319)
T PF03662_consen 191 KDFIQLRKILNEI 203 (319)
T ss_dssp HHH---HHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877653
No 64
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.66 E-value=5.1e+02 Score=27.58 Aligned_cols=58 Identities=17% Similarity=0.328 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhhhHHHHHHHhhcCCcccccccccc
Q 012660 133 IWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYPYF 209 (459)
Q Consensus 133 ~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf 209 (459)
..++...+++.+|+++ .++.++|. ++- ++| | +- +.-+...++|+.+.+ +-.+++++|-
T Consensus 280 ~~~~~~~~i~~lr~~~-----~~i~i~~d----~Iv-G~P---g----ET-~ed~~~tl~~i~~l~-~~~~~~~~~s 337 (439)
T PRK14328 280 TREYYLELVEKIKSNI-----PDVAITTD----IIV-GFP---G----ET-EEDFEETLDLVKEVR-YDSAFTFIYS 337 (439)
T ss_pred CHHHHHHHHHHHHHhC-----CCCEEEEE----EEE-ECC---C----CC-HHHHHHHHHHHHhcC-CCcccceEec
Confidence 4567778888877753 23445442 222 344 1 11 255778899987654 3456777654
No 65
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=31.84 E-value=60 Score=25.49 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=29.4
Q ss_pred HHHHHHHhhccccCCCceEEEEEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhC
Q 012660 95 VADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAH 151 (459)
Q Consensus 95 ~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~ 151 (459)
.-..|+++||. .|+|.++.+.. +....+.|+|+++..++.++..
T Consensus 12 iLi~WLedNi~------------~es~iiFDNde-d~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 12 ILIAWLEDNID------------CESDIIFDNDE-DKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHcccC------------CCCCeeecCCC-cccchHHHHHHHHHHHHHHHHH
Confidence 34579998864 35566665410 2344678999999999888643
No 66
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=31.72 E-value=60 Score=30.08 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=45.3
Q ss_pred hhhhhhcC--CceEEEEeccchhH---HHhhhHHHHHHHHHhhccccCCCceEEEEEeccccccCCchhhhhhHHHHHHH
Q 012660 66 ILKLLSGT--DLKVSIMVQNHEII---DIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPA 140 (459)
Q Consensus 66 vL~A~~~t--gi~v~vGv~n~~l~---~~a~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~a 140 (459)
-++.++.. |+||++.|...... .++.+.+..++.+ +++..+...-++.+|-+==|..... +......++..
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~-~~~~~~v~~~~~DGidiD~E~~~~~---~~~~~~~~~~l 129 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFA-NSLVSFLKTYGFDGVDIDWEYPGAA---DNSDRENFITL 129 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHH-HHHHHHHHHcCCCceEEeeeCCCCc---CccHHHHHHHH
Confidence 45556554 99999999753211 2334433333322 2333333323455555543433221 10125679999
Q ss_pred HHHHHHHHHhCCC
Q 012660 141 MHRIKKCLNAHNI 153 (459)
Q Consensus 141 m~~v~~aL~~~gl 153 (459)
|+.+|++|.+.++
T Consensus 130 l~~lr~~l~~~~~ 142 (210)
T cd00598 130 LRELRSALGAANY 142 (210)
T ss_pred HHHHHHHhcccCc
Confidence 9999999987643
No 67
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=31.48 E-value=4.1e+02 Score=24.28 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHhC--CCCeEEEecCCh-------hhhhhhhcCCceEEEE
Q 012660 39 LPSSYQSIESIKFL--QAGSVKIYDANP-------EILKLLSGTDLKVSIM 80 (459)
Q Consensus 39 lps~~~vv~llks~--~~~~VRlY~~d~-------~vL~A~~~tgi~v~vG 80 (459)
..+++++++.++.. .++.|.+.+-+| ++++.+++.|+.+.+-
T Consensus 46 ~~~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~ 96 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLD 96 (191)
T ss_pred cCCHHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEE
Confidence 45788998888653 368999988654 3567777788876553
No 68
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=31.44 E-value=2.5e+02 Score=28.33 Aligned_cols=53 Identities=9% Similarity=0.126 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhhhHHHHHHHhhcCCccccccc
Q 012660 139 PAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVY 206 (459)
Q Consensus 139 ~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiy 206 (459)
.+...+++..++.|..++++...... +.|+ ++.+.++..+..+.+-|+.++.=
T Consensus 113 ~a~~E~er~v~~~gf~g~~l~p~~~~------~~~~---------~~~~~pi~~~a~~~gvpv~ihtG 165 (293)
T COG2159 113 AAAEELERRVRELGFVGVKLHPVAQG------FYPD---------DPRLYPIYEAAEELGVPVVIHTG 165 (293)
T ss_pred HHHHHHHHHHHhcCceEEEecccccC------CCCC---------ChHHHHHHHHHHHcCCCEEEEeC
Confidence 35667777777778766777543211 1111 15578999999999999998543
No 69
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.65 E-value=3e+02 Score=30.02 Aligned_cols=57 Identities=12% Similarity=0.345 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhhhHHHHHHHhhcCCccccccccc
Q 012660 133 IWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYPY 208 (459)
Q Consensus 133 ~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPy 208 (459)
+..+...+++.+|++. .+|.|+|.. +. +|| | |- +..+...++|+.+.+ +-.+++|+|
T Consensus 290 t~~~~~~~v~~lr~~~-----~~i~i~~~~----Iv-GfP---g----ET-~edf~~Tl~~i~~~~-~~~~~~f~~ 346 (502)
T PRK14326 290 RSERFLGILEKVRAAM-----PDAAITTDI----IV-GFP---G----ET-EEDFQATLDVVREAR-FSSAFTFQY 346 (502)
T ss_pred CHHHHHHHHHHHHHhC-----CCCeEEEEE----EE-ECC---C----CC-HHHHHHHHHHHHHcC-CCEEEEEee
Confidence 4667778888887752 235666532 22 344 1 21 256778999997754 223455554
No 70
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=30.37 E-value=2.9e+02 Score=26.07 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCCCceEEEee-cCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcC
Q 012660 248 MLDSVIFAMAKLGYSDIRLAISE-TGWPNAGDFDQIGANIYNAATYNRNLIKKMTSK 303 (459)
Q Consensus 248 ~~Dav~~A~~k~g~~~~~vvVsE-TGWPS~G~~~~~~as~~na~~y~~~li~~~~s~ 303 (459)
.++..+..+. .++|++||++.| .++|..--......+.+..+...+..++.+++.
T Consensus 79 ~~~~fv~~iR-~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~ 134 (178)
T PF14606_consen 79 RLDGFVKTIR-EAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKE 134 (178)
T ss_dssp HHHHHHHHHH-TT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333343 478999999999 455554222234577788888888888887654
No 71
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=30.33 E-value=4.8e+02 Score=26.42 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHH---HhCCCCeEEEecCCh-------hhhhhhhc-CCc-eEEEE
Q 012660 38 NLPSSYQSIESI---KFLQAGSVKIYDANP-------EILKLLSG-TDL-KVSIM 80 (459)
Q Consensus 38 nlps~~~vv~ll---ks~~~~~VRlY~~d~-------~vL~A~~~-tgi-~v~vG 80 (459)
...+.+++.+++ .+.|+.+|++.+-+| ++++.++. .|+ ++.+.
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~gi~~v~it 95 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALPGIEDIALT 95 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcCCCCeEEEE
Confidence 456777775544 467899999998654 45666665 578 66654
No 72
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=30.11 E-value=87 Score=34.03 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCCeEEE-------ec------CCh-------hhhhhhhcCCceEEEEecc
Q 012660 42 SYQSIESIKFLQAGSVKI-------YD------ANP-------EILKLLSGTDLKVSIMVQN 83 (459)
Q Consensus 42 ~~~vv~llks~~~~~VRl-------Y~------~d~-------~vL~A~~~tgi~v~vGv~n 83 (459)
-++.++|||+.|++..|+ +- .|+ ++|.++...||+.+|.+.-
T Consensus 71 y~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H 132 (477)
T PRK15014 71 YKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSH 132 (477)
T ss_pred cHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC
Confidence 367789999988777664 31 132 5889999999999999953
No 73
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=30.10 E-value=84 Score=30.68 Aligned_cols=81 Identities=9% Similarity=0.096 Sum_probs=45.2
Q ss_pred hhhhhhhcCCceEEEEeccch---hHHHhhhHHHHHHHHHhhccccCCCceEEEEEeccccccCCchhhhhhHHHHHHHH
Q 012660 65 EILKLLSGTDLKVSIMVQNHE---IIDIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAM 141 (459)
Q Consensus 65 ~vL~A~~~tgi~v~vGv~n~~---l~~~a~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am 141 (459)
..+++++..|+||++.|.+.. ...+..+.+..+++++ +|..+...-.+.+|-+==|-... ....++..|
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~-~lv~~~~~~~~DGIdiDwE~~~~-------~~~~~~~fv 121 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVD-KIINYVVSYNLDGIDVDLEGPDV-------TFGDYLVFI 121 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHH-HHHHHHHHhCCCceeEEeeccCc-------cHhHHHHHH
Confidence 355677778999999886542 1224444443334333 33333322234455544443321 134567789
Q ss_pred HHHHHHHHhCCC
Q 012660 142 HRIKKCLNAHNI 153 (459)
Q Consensus 142 ~~v~~aL~~~gl 153 (459)
+++|++|.+.|+
T Consensus 122 ~~Lr~~l~~~~~ 133 (253)
T cd06545 122 RALYAALKKEGK 133 (253)
T ss_pred HHHHHHHhhcCc
Confidence 999999987663
No 74
>PRK07198 hypothetical protein; Validated
Probab=30.09 E-value=37 Score=35.98 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=32.9
Q ss_pred HHHHHhCCCCeE-EEecCChhhhhhhhcCCceEEEEec
Q 012660 46 IESIKFLQAGSV-KIYDANPEILKLLSGTDLKVSIMVQ 82 (459)
Q Consensus 46 v~llks~~~~~V-RlY~~d~~vL~A~~~tgi~v~vGv~ 82 (459)
.|.|+..|+++| |+...++.-+.++.+.||+|.==|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 688999999999 9999999889999999999984443
No 75
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=30.06 E-value=1.8e+02 Score=29.45 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred hcCCceEEEEecc----chhHHHhhhHHHHHHHHHhhccccCCCceEEEEEeccccccC-------CchhhhhhHHHHHH
Q 012660 71 SGTDLKVSIMVQN----HEIIDIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQ-------SSEEYKQIWKNLVP 139 (459)
Q Consensus 71 ~~tgi~v~vGv~n----~~l~~~a~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~~-------~~~~~~~~~~~Lv~ 139 (459)
++.++||++.|.. +....++++....++.++ ++..+...-.+.+|-+==|-... . .......++.
T Consensus 81 ~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~-siv~~l~~~~fDGidiDwE~p~~~~~~~~~~---~~~d~~~~~~ 156 (322)
T cd06548 81 KNPHLKILLSIGGWTWSGGFSDAAATEASRAKFAD-SAVDFIRKYGFDGIDIDWEYPGSGGAPGNVA---RPEDKENFTL 156 (322)
T ss_pred hCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHH-HHHHHHHhcCCCeEEECCcCCCCCCCCCCCC---ChhHHHHHHH
Q ss_pred HHHHHHHHHHhCC----CCc-eEeccccccccccccCCCCCccccCcchhhhhHHHHHHHhhcCCccccccccccccCCC
Q 012660 140 AMHRIKKCLNAHN----IHN-IKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYPYFAWSTN 214 (459)
Q Consensus 140 am~~v~~aL~~~g----l~~-IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~~~~ 214 (459)
-|+.+|++|.++| .+. +.+..+.....+..... +.|.+.+||+. +-.|=|......
T Consensus 157 ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~~~~~~------------~~l~~~vD~vn-------lMtYD~~g~w~~ 217 (322)
T cd06548 157 LLKELREALDALGAETGRKYLLTIAAPAGPDKLDKLEV------------AEIAKYLDFIN-------LMTYDFHGAWSN 217 (322)
T ss_pred HHHHHHHHHHHhhhccCCceEEEEEccCCHHHHhcCCH------------HHHhhcCCEEE-------EEEeeccCCCCC
Q ss_pred CCccCcchhhcccCCCccccCCCCcccchhHHHHHHHHHHHHHHcCCCCceEEEe
Q 012660 215 PKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFAMAKLGYSDIRLAIS 269 (459)
Q Consensus 215 p~~i~l~yAlf~~~~~~~~d~~~~~~Y~n~fda~~Dav~~A~~k~g~~~~~vvVs 269 (459)
..+...+--.......-.-.++.....+.+.|.+.-+|+++
T Consensus 218 --------------~~g~~spL~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlG 258 (322)
T cd06548 218 --------------TTGHHSNLYASPADPPGGYSVDAAVNYYLSAGVPPEKLVLG 258 (322)
T ss_pred --------------CCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEE
No 76
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=29.57 E-value=73 Score=27.51 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=19.6
Q ss_pred CHHHHHHHHHhC---CCCeEEEecCChhhh
Q 012660 41 SSYQSIESIKFL---QAGSVKIYDANPEIL 67 (459)
Q Consensus 41 s~~~vv~llks~---~~~~VRlY~~d~~vL 67 (459)
.|+++..+|+.. .-+++||||+|..+|
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~Ll 31 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGNLL 31 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCCEE
Confidence 467777777654 248999999997544
No 77
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=29.43 E-value=5.3e+02 Score=28.24 Aligned_cols=63 Identities=10% Similarity=0.022 Sum_probs=39.5
Q ss_pred HHHHhhccccCC-CceEEEEEeccccccC-----CchhhhhhHHHHHHHHHH-HHHHHHhCCCC-ceEecc
Q 012660 98 QWVHDNVLSFYP-ETMIRFILVGNEILSQ-----SSEEYKQIWKNLVPAMHR-IKKCLNAHNIH-NIKVGT 160 (459)
Q Consensus 98 ~wv~~~v~~~~~-~~~I~~I~VGNEvl~~-----~~~~~~~~~~~Lv~am~~-v~~aL~~~gl~-~IkVsT 160 (459)
+.+.+-|+.|-. +..|-+|++.||+... .+..-.-+++++...|++ ++-+|++.|++ ++|+=.
T Consensus 208 ~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 208 DYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp HHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 445556666643 5789999999999852 110001236677777876 99999999984 477643
No 78
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=28.97 E-value=81 Score=26.43 Aligned_cols=46 Identities=7% Similarity=0.056 Sum_probs=30.8
Q ss_pred EEEeccccccCCchh---hhhhHHHHHHHHHHHHHHHHhCCCCc---eEecc
Q 012660 115 FILVGNEILSQSSEE---YKQIWKNLVPAMHRIKKCLNAHNIHN---IKVGT 160 (459)
Q Consensus 115 ~I~VGNEvl~~~~~~---~~~~~~~Lv~am~~v~~aL~~~gl~~---IkVsT 160 (459)
.+.+|+-++.++..+ +....++.-.+++||++.|+++|.+- +|++.
T Consensus 6 av~~g~~v~iSGq~~~~~~~~~~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~v 57 (105)
T cd06150 6 AVVHNGTVYLAGQVADDTSADITGQTRQVLAKIDALLAEAGSDKSRILSATI 57 (105)
T ss_pred EEEECCEEEEeCcCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 345565555443211 12457899999999999999999643 66664
No 79
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=28.45 E-value=1e+02 Score=27.76 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCeEEEe--c--------CCh---hhhhhhhcCCceEEE
Q 012660 43 YQSIESIKFLQAGSVKIY--D--------ANP---EILKLLSGTDLKVSI 79 (459)
Q Consensus 43 ~~vv~llks~~~~~VRlY--~--------~d~---~vL~A~~~tgi~v~v 79 (459)
+++.+.++.+|++.|+++ + +-+ .+|++|+..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 445667778999988888 3 333 689999999999753
No 80
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=28.41 E-value=5.4e+02 Score=24.73 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC-----------hhhhhhhhcCCceEEEEeccc-----hhHHHhhhHHHHHHHHHhh
Q 012660 40 PSSYQSIESIKFLQAGSVKIYDAN-----------PEILKLLSGTDLKVSIMVQNH-----EIIDIASKQKVADQWVHDN 103 (459)
Q Consensus 40 ps~~~vv~llks~~~~~VRlY~~d-----------~~vL~A~~~tgi~v~vGv~n~-----~l~~~a~~~~~A~~wv~~~ 103 (459)
|++ ...+.||+.+...|=.|=++ +.=++++...|++|+. |++. ....-+.-...|.+-++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 444 56777888888888777443 1346788889999864 2321 1111222234455555544
Q ss_pred ccccCCCceEEEEEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCCC
Q 012660 104 VLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNIH 154 (459)
Q Consensus 104 v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl~ 154 (459)
..-=.|...+.++.|=...... +....++|+++-+.++|...||.
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~~------~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALDD------EVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCcc------hhHHHHHHHHHHHHHHHHhcCCc
Confidence 4433466667788885544322 24578999999999999998863
No 81
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=27.85 E-value=8e+02 Score=26.50 Aligned_cols=185 Identities=16% Similarity=0.223 Sum_probs=80.6
Q ss_pred EEEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhhhHHHHHHH
Q 012660 115 FILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFL 194 (459)
Q Consensus 115 ~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL 194 (459)
..=|=||+=...+- ......+-....+.+.++|++.. ..+||+-|-.. +. . ...+...++|+
T Consensus 158 ~fEiWNEPd~~~f~-~~~~~~ey~~ly~~~~~~iK~~~-p~~~vGGp~~~--~~---------~-----~~~~~~~l~~~ 219 (486)
T PF01229_consen 158 YFEIWNEPDLKDFW-WDGTPEEYFELYDATARAIKAVD-PELKVGGPAFA--WA---------Y-----DEWCEDFLEFC 219 (486)
T ss_dssp EEEESS-TTSTTTS-GGG-HHHHHHHHHHHHHHHHHH--TTSEEEEEEEE--TT---------------THHHHHHHHHH
T ss_pred eEEeCcCCCccccc-CCCCHHHHHHHHHHHHHHHHHhC-CCCcccCcccc--cc---------H-----HHHHHHHHHHH
Confidence 35578996443210 11234456677777777777764 33788876100 00 0 03456777887
Q ss_pred hhcCC---ccccccccccccCCCCCccCcchhhcccCCCccccCCCCcccchhHHHHHHHHHHHHHHcCCCCceEEEeec
Q 012660 195 NRTKS---FFFLDVYPYFAWSTNPKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFAMAKLGYSDIRLAISET 271 (459)
Q Consensus 195 ~~~~s---p~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~~~d~~~~~~Y~n~fda~~Dav~~A~~k~g~~~~~vvVsET 271 (459)
.+.+. ++..+.||+-..... ....... -.....+++. +.-+...+...+.+++++.++|
T Consensus 220 ~~~~~~~DfiS~H~y~~~~~~~~--------------~~~~~~~--~~~~~~~~~~-~~~~~~~~~~e~~p~~~~~~tE- 281 (486)
T PF01229_consen 220 KGNNCPLDFISFHSYGTDSAEDI--------------NENMYER--IEDSRRLFPE-LKETRPIINDEADPNLPLYITE- 281 (486)
T ss_dssp HHCT---SEEEEEEE-BESESE---------------SS-EEEE--B--HHHHHHH-HHHHHHHHHTSSSTT--EEEEE-
T ss_pred hcCCCCCCEEEEEeccccccccc--------------chhHHhh--hhhHHHHHHH-HHHHHHHHhhccCCCCceeecc-
Confidence 76553 334455543111000 0000000 0001112222 2222234555678999999999
Q ss_pred CCCCCCCCCCC-CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccEEEE----EeccCCCCCCCCCCceeeeecCCCC
Q 012660 272 GWPNAGDFDQI-GANIYNAATYNRNLIKKMTSKPALGTPARPGSIIPTFIF----SLYDENQKTGPGTERHWGMLHGNGV 346 (459)
Q Consensus 272 GWPS~G~~~~~-~as~~na~~y~~~li~~~~s~~~~GTp~rp~~~~~~yiF----~lFDe~~K~G~~~E~~wGlf~~d~~ 346 (459)
|.+.-..... --|.-+|+-..+++++.... .++.|-+ ..|.|+--+...+-.-|||++-+|-
T Consensus 282 -~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~------------~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI 348 (486)
T PF01229_consen 282 -WNASISPRNPQHDTCFKAAYIAKNLLSNDGA------------FLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGI 348 (486)
T ss_dssp -EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG------------T-SEEEES-SBS---TTSS-SSSSSS-S-SEECCCE
T ss_pred -cccccCCCcchhccccchhhHHHHHHHhhhh------------hhhhhhccchhhhhhccCCCCCceecchhhhhccCC
Confidence 8775543211 23556666666667766532 1333221 1233332221234455999999986
Q ss_pred ee
Q 012660 347 PI 348 (459)
Q Consensus 347 ~k 348 (459)
+|
T Consensus 349 ~K 350 (486)
T PF01229_consen 349 PK 350 (486)
T ss_dssp E-
T ss_pred Cc
Confidence 65
No 82
>PF15560 Imm8: Immunity protein 8
Probab=27.51 E-value=1.2e+02 Score=27.05 Aligned_cols=56 Identities=21% Similarity=0.412 Sum_probs=41.5
Q ss_pred EEEEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhC-------CCCceEeccccccccccccCCCCCccccC
Q 012660 114 RFILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAH-------NIHNIKVGTPLAMDIFQTTFPPSNGTFRS 180 (459)
Q Consensus 114 ~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~-------gl~~IkVsT~~~~~~l~~s~pPS~g~f~~ 180 (459)
--|++|-|.. ....+.|.++++|+.|+.. ||+++|+.--.+.++ ++|-|++|.+..
T Consensus 5 ln~ViGG~~~---------~~~~~~~~ir~mRk~lKk~F~~~~~e~l~k~kI~l~~sGdv--S~Y~~~sGIyq~ 67 (133)
T PF15560_consen 5 LNIVIGGQID---------AEKNLHSLIREMRKSLKKQFESIEFEGLDKIKINLYFSGDV--SSYCDKSGIYQC 67 (133)
T ss_pred EEEEEcCcch---------HHHHHHHHHHHHHHHHHHHHHhhhHhhhhhEeEEEEEcCch--hhhcCCCCcchh
Confidence 3567775542 2367889999999999865 788888888777775 358889998764
No 83
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=27.21 E-value=2.1e+02 Score=30.75 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhhhhh--cCCceEEEEe--ccc--hhHHHhhhHHHHHHHHHhhccccCCCceEEEE--------EeccccccCCchhhh
Q 012660 66 ILKLLS--GTDLKVSIMV--QNH--EIIDIASKQKVADQWVHDNVLSFYPETMIRFI--------LVGNEILSQSSEEYK 131 (459)
Q Consensus 66 vL~A~~--~tgi~v~vGv--~n~--~l~~~a~~~~~A~~wv~~~v~~~~~~~~I~~I--------~VGNEvl~~~~~~~~ 131 (459)
.|..++ .+.+|+.+.| |.+ .-..++++.+.-++.+++.| .+...-.+.+| ..|++...+. .
T Consensus 116 ~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saV-e~~r~~~FDGVDIDWEYP~~~~~~~~~~~----~ 190 (441)
T COG3325 116 ALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAV-EFMRTYGFDGVDIDWEYPGSGGDAGNCGR----P 190 (441)
T ss_pred HHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHH-HHHHhcCCCceeeccccCCCCCCCCCCCC----c
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCc---eEeccccccccccccCCCCCccccCcchhhhhHHHHHHHh
Q 012660 132 QIWKNLVPAMHRIKKCLNAHNIHN---IKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLN 195 (459)
Q Consensus 132 ~~~~~Lv~am~~v~~aL~~~gl~~---IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~ 195 (459)
...+..+-.|+.||++|-.+|.++ ..+|++. |++...-..+....|.+.|||+.
T Consensus 191 ~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~----------~as~~~l~~~~~~~~~~~vDyiN 247 (441)
T COG3325 191 KDKANYVLLLQELRKKLDKAGVEDGRHYQLTIAA----------PASKDKLEGLNHAEIAQYVDYIN 247 (441)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCceEEEEEec----------CCchhhhhcccHHHHHHHHhhhh
No 84
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=27.16 E-value=1e+02 Score=27.30 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=35.6
Q ss_pred HHHHHHHhCCCCeEEEecCChhhhhhhhcCCceEEEEec
Q 012660 44 QSIESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQ 82 (459)
Q Consensus 44 ~vv~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~vGv~ 82 (459)
++.++|+.+|++-|=.-.--+..+++|++.||+|..+..
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999998888888999999999999999977
No 85
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.68 E-value=1.4e+02 Score=28.97 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=46.6
Q ss_pred CcceEEecCCCCCCCCHHHHHHHHHhCCCCeEEEecCCh-----hhhhhhhc--CCceEEEEeccchhHHHhhhHHHHHH
Q 012660 26 DKIGINYGKLGSNLPSSYQSIESIKFLQAGSVKIYDANP-----EILKLLSG--TDLKVSIMVQNHEIIDIASKQKVADQ 98 (459)
Q Consensus 26 ~~~GvnYg~~~~nlps~~~vv~llks~~~~~VRlY~~d~-----~vL~A~~~--tgi~v~vGv~n~~l~~~a~~~~~A~~ 98 (459)
+.|||.+=...-.++. .--+++|||+-. .+.++... .|+=++.-|-|+ .+ -...+.
T Consensus 43 sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne--~S----feni~~ 105 (207)
T KOG0078|consen 43 STIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE--KS----FENIRN 105 (207)
T ss_pred ceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch--HH----HHHHHH
Confidence 4567766654444444 124678898862 56666653 355555555553 22 344556
Q ss_pred HHHhhccccCCCceEEEEEecccc
Q 012660 99 WVHDNVLSFYPETMIRFILVGNEI 122 (459)
Q Consensus 99 wv~~~v~~~~~~~~I~~I~VGNEv 122 (459)
|++ +|..+.+. .+.-|.|||-.
T Consensus 106 W~~-~I~e~a~~-~v~~~LvGNK~ 127 (207)
T KOG0078|consen 106 WIK-NIDEHASD-DVVKILVGNKC 127 (207)
T ss_pred HHH-HHHhhCCC-CCcEEEeeccc
Confidence 766 57776553 67889999975
No 86
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.57 E-value=52 Score=27.82 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=13.8
Q ss_pred CchHHHHHHHHHHHHHHhhhcccc
Q 012660 1 MSLFFYITWVLVLSSKFYLASAET 24 (459)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (459)
|.-+.|++|+|.|++++...+.++
T Consensus 1 MaSK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhh
Confidence 555666666666655555554433
No 87
>CHL00041 rps11 ribosomal protein S11
Probab=25.90 E-value=1.2e+02 Score=26.41 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCCeEEEec--CC---hhhhhhhhcCCceEE
Q 012660 44 QSIESIKFLQAGSVKIYD--AN---PEILKLLSGTDLKVS 78 (459)
Q Consensus 44 ~vv~llks~~~~~VRlY~--~d---~~vL~A~~~tgi~v~ 78 (459)
++.+.+++.|++.|+++= .. ..+|++++..|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345666778999888883 33 368899999999875
No 88
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=25.54 E-value=1.2e+02 Score=26.31 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCc-eEeccc
Q 012660 133 IWKNLVPAMHRIKKCLNAHNIHN-IKVGTP 161 (459)
Q Consensus 133 ~~~~Lv~am~~v~~aL~~~gl~~-IkVsT~ 161 (459)
...++-.+|+||++.|+++|.++ ||+++-
T Consensus 31 ~~~Q~~qal~Ni~~vL~~aG~~dVvk~~iy 60 (118)
T cd06156 31 ITLQAVLSLQHLERVAKAMNVQWVLAAVCY 60 (118)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Confidence 56889999999999999999955 777754
No 89
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=25.52 E-value=2.5e+02 Score=23.84 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=27.8
Q ss_pred cCCcceEEecCCCCCCCCHHHHHHHHHhCCCCeEEE
Q 012660 24 TSDKIGINYGKLGSNLPSSYQSIESIKFLQAGSVKI 59 (459)
Q Consensus 24 ~~~~~GvnYg~~~~nlps~~~vv~llks~~~~~VRl 59 (459)
....+-|.-...+.++++..+|.+.|++.||..-++
T Consensus 30 e~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 30 EDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred CCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceE
Confidence 445677777777778888889999999999865555
No 90
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=25.42 E-value=4.9e+02 Score=27.58 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhhhHHHHHHHhhcCCcccccccccccc
Q 012660 133 IWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYPYFAW 211 (459)
Q Consensus 133 ~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~ 211 (459)
..++.+.+++.+|++.. ++.|++. ++. ++| | +- +..+...++|+.+.+ +-.+++++|--+
T Consensus 268 ~~~~~~~~i~~l~~~~~-----~i~i~~~----~I~-G~P---g----ET-~e~~~~t~~fl~~~~-~~~~~~~~~sp~ 327 (430)
T TIGR01125 268 SGEQQLDFIERLREKCP-----DAVLRTT----FIV-GFP---G----ET-EEDFQELLDFVEEGQ-FDRLGAFTYSPE 327 (430)
T ss_pred CHHHHHHHHHHHHHhCC-----CCeEeEE----EEE-ECC---C----CC-HHHHHHHHHHHHhcC-CCEEeeeeccCC
Confidence 35677888888877531 2344432 221 243 1 11 256788999998754 345677776443
No 91
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=25.38 E-value=1.1e+02 Score=29.19 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=34.8
Q ss_pred HHHHHhCCCCeEEEecCChhhhhhhhcCCceEEEEeccc
Q 012660 46 IESIKFLQAGSVKIYDANPEILKLLSGTDLKVSIMVQNH 84 (459)
Q Consensus 46 v~llks~~~~~VRlY~~d~~vL~A~~~tgi~v~vGv~n~ 84 (459)
+|.|+..||++||+-..+|.=..++.+.||+|.=-++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 578899999999999999988999999999998888753
No 92
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=24.93 E-value=1.4e+02 Score=26.67 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=33.3
Q ss_pred CHHHHHHHHHhCCCCeEEEecC---------------------C--hhhhhhhhcCCceEEEEecc
Q 012660 41 SSYQSIESIKFLQAGSVKIYDA---------------------N--PEILKLLSGTDLKVSIMVQN 83 (459)
Q Consensus 41 s~~~vv~llks~~~~~VRlY~~---------------------d--~~vL~A~~~tgi~v~vGv~n 83 (459)
+|+++++.||..+++.|-+|.- | .++++|+...||+|++-+.-
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 4688899999888888888642 1 25778999999999887753
No 93
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=24.69 E-value=2e+02 Score=27.91 Aligned_cols=42 Identities=12% Similarity=0.355 Sum_probs=24.0
Q ss_pred HHcCCCCceEEEeecCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHh
Q 012660 257 AKLGYSDIRLAISETGWPNAGDFDQ---IGANIYNAATYNRNLIKKMT 301 (459)
Q Consensus 257 ~k~g~~~~~vvVsETGWPS~G~~~~---~~as~~na~~y~~~li~~~~ 301 (459)
..++++...|+. .|||.|.... ...+...++..+.++++.+.
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 345677755555 5999997532 12344444555555666554
No 94
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=24.56 E-value=2.7e+02 Score=29.88 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhCC
Q 012660 140 AMHRIKKCLNAHN 152 (459)
Q Consensus 140 am~~v~~aL~~~g 152 (459)
.|+++-+.|.+.|
T Consensus 264 ~l~~L~~~L~~~g 276 (417)
T TIGR03820 264 IMKKLVHKLVANR 276 (417)
T ss_pred HHHHHHHHHHHCC
Confidence 3455555555554
No 95
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=24.47 E-value=1.8e+02 Score=28.63 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCeEEEecCC---hhhhhhhhcCCceEEEEeccchhHHHhhhHHHHHHHHHh
Q 012660 43 YQSIESIKFLQAGSVKIYDAN---PEILKLLSGTDLKVSIMVQNHEIIDIASKQKVADQWVHD 102 (459)
Q Consensus 43 ~~vv~llks~~~~~VRlY~~d---~~vL~A~~~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~ 102 (459)
.+-+++|.+.++..+||=+.| -..|+.++.+|.+|+|......+..+ ..|.+.+++
T Consensus 79 ~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI----~~Av~~~~~ 137 (241)
T PF03102_consen 79 EESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEI----ERAVEVLRE 137 (241)
T ss_dssp HHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHH----HHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHH----HHHHHHHHh
Confidence 345677777788999988766 36899999999999999987665544 456666633
No 96
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=24.45 E-value=2.3e+02 Score=29.78 Aligned_cols=25 Identities=4% Similarity=0.108 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEec
Q 012660 135 KNLVPAMHRIKKCLNAHNIHNIKVG 159 (459)
Q Consensus 135 ~~Lv~am~~v~~aL~~~gl~~IkVs 159 (459)
.........+++.|.++|+...-++
T Consensus 227 ~~~~~~~~~~~~~L~~~Gy~~yeis 251 (400)
T PRK07379 227 ETTAAMYRLAQEILTQAGYEHYEIS 251 (400)
T ss_pred HHHHHHHHHHHHHHHHcCCceeeee
Confidence 3445566778899999999765444
No 97
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=24.37 E-value=97 Score=26.68 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCeEEEe--cCCh---hhhhhhhcCCceEEE
Q 012660 44 QSIESIKFLQAGSVKIY--DANP---EILKLLSGTDLKVSI 79 (459)
Q Consensus 44 ~vv~llks~~~~~VRlY--~~d~---~vL~A~~~tgi~v~v 79 (459)
.+.+.++..|++.|+++ +..+ .+|++|+.+|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34566677899988888 3332 688999999998653
No 98
>PRK05309 30S ribosomal protein S11; Validated
Probab=24.24 E-value=1.4e+02 Score=26.64 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCeEEEec--CC---hhhhhhhhcCCceEE
Q 012660 43 YQSIESIKFLQAGSVKIYD--AN---PEILKLLSGTDLKVS 78 (459)
Q Consensus 43 ~~vv~llks~~~~~VRlY~--~d---~~vL~A~~~tgi~v~ 78 (459)
+.+.+.++..|++.|+++- .. ..+|.+|+..|++|.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 3445667789999999993 33 368999999999865
No 99
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=23.59 E-value=3.6e+02 Score=27.55 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=24.1
Q ss_pred HHHHHHhCC-CCeEEEec---------CChhhhhhhhcCCceEEEEecc
Q 012660 45 SIESIKFLQ-AGSVKIYD---------ANPEILKLLSGTDLKVSIMVQN 83 (459)
Q Consensus 45 vv~llks~~-~~~VRlY~---------~d~~vL~A~~~tgi~v~vGv~n 83 (459)
+++.|++.+ +.++|+.. .+.+.++.++++|..+.|++--
T Consensus 158 ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~ 206 (321)
T TIGR03822 158 IMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHA 206 (321)
T ss_pred HHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecC
Confidence 344444443 56677754 1346778888888777777753
No 100
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=23.13 E-value=3e+02 Score=24.10 Aligned_cols=47 Identities=6% Similarity=0.016 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHhCCCCeEEEecCC----------hhhhhhhhcCCceEEEEec
Q 012660 36 GSNLPSSYQSIESIKFLQAGSVKIYDAN----------PEILKLLSGTDLKVSIMVQ 82 (459)
Q Consensus 36 ~~nlps~~~vv~llks~~~~~VRlY~~d----------~~vL~A~~~tgi~v~vGv~ 82 (459)
+-..|++.+.++.|...|+++|-+-..- +..+.+++...+++.+|-|
T Consensus 52 ~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~p 108 (127)
T cd03412 52 GIEVDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRP 108 (127)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccC
Confidence 3567999999999999999999887543 3456666766888999877
No 101
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.95 E-value=9.1e+02 Score=25.91 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhhhHHHHHHHhhcCCccccccccccccC
Q 012660 133 IWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYPYFAWS 212 (459)
Q Consensus 133 ~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~~ 212 (459)
+..+...+++.+|++.. +|.++|. ++- +|| | +- +..+...++|+.+.+ +=.+++|+|--.
T Consensus 284 t~~~~~~~i~~lr~~~p-----~i~i~td----~Iv-GfP---g----ET-~edf~~tl~~v~~l~-~~~~~~f~ys~~- 343 (449)
T PRK14332 284 SKEEFLDVVKEIRNIVP-----DVGITTD----IIV-GFP---N----ET-EEEFEDTLAVVREVQ-FDMAFMFKYSER- 343 (449)
T ss_pred CHHHHHHHHHHHHHhCC-----CCEEEEE----EEe-eCC---C----CC-HHHHHHHHHHHHhCC-CCEEEEEEecCC-
Confidence 46788888888887642 2444442 222 354 1 21 255778899987655 234677765433
Q ss_pred CCCCccCcchhhcccCCCccccCCCCcccchhHHHHHHHHHHHHHHcCCCCceEEEeecCC
Q 012660 213 TNPKTISLDFALLRETNTSYTDPNSGLVYTNLLDQMLDSVIFAMAKLGYSDIRLAISETGW 273 (459)
Q Consensus 213 ~~p~~i~l~yAlf~~~~~~~~d~~~~~~Y~n~fda~~Dav~~A~~k~g~~~~~vvVsETGW 273 (459)
|.+. -+..+.. .+.+.....++..|.+.|-.-.....++.=....+|+|.|.+.
T Consensus 344 --~GT~--a~~~~~~---~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~ 397 (449)
T PRK14332 344 --EGTM--AKRKLPD---NVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTSR 397 (449)
T ss_pred --CCCh--hHHhCcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccC
Confidence 2211 1111211 1111112234444544444433333333322457888876443
No 102
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=22.58 E-value=2.3e+02 Score=27.40 Aligned_cols=71 Identities=14% Similarity=0.225 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCCh---------hhhhhhh-cCCceEEEEeccchhHHHhhhHHHHHHHHHhhccccCC
Q 012660 40 PSSYQSIESIKFLQAGSVKIYDANP---------EILKLLS-GTDLKVSIMVQNHEIIDIASKQKVADQWVHDNVLSFYP 109 (459)
Q Consensus 40 ps~~~vv~llks~~~~~VRlY~~d~---------~vL~A~~-~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~~~~ 109 (459)
-+|-++++.+.+.+++.+-+-|.|. +++..++ .++++|.+|=.... .+.++.|+...
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs-------~ed~~~ll~~G------ 95 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIRS-------IEDAERLLDAG------ 95 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-S-------HHHHHHHHHTT------
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccCc-------HHHHHHHHHhC------
Confidence 4788999999999999999998762 3554444 67899999977433 34455666532
Q ss_pred CceEEEEEeccccccCC
Q 012660 110 ETMIRFILVGNEILSQS 126 (459)
Q Consensus 110 ~~~I~~I~VGNEvl~~~ 126 (459)
+..|++|.|.+.+.
T Consensus 96 ---a~~Vvigt~~~~~~ 109 (229)
T PF00977_consen 96 ---ADRVVIGTEALEDP 109 (229)
T ss_dssp ----SEEEESHHHHHCC
T ss_pred ---CCEEEeChHHhhch
Confidence 34689999988664
No 103
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=22.39 E-value=4e+02 Score=28.10 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHhC-CCCeEEEe--cC-----C-----hhhhhhhhcCCceEEEEeccchhHHHhhhHHHHHHHHHhhccc
Q 012660 40 PSSYQSIESIKFL-QAGSVKIY--DA-----N-----PEILKLLSGTDLKVSIMVQNHEIIDIASKQKVADQWVHDNVLS 106 (459)
Q Consensus 40 ps~~~vv~llks~-~~~~VRlY--~~-----d-----~~vL~A~~~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~ 106 (459)
-+.+++..+++.. .|.+||+- .+ . ..+.+.+..+..+|++-.-..--..+.....+|.+-++++
T Consensus 172 ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~Eit~e~~~A~~~L~~a--- 248 (369)
T COG1509 172 LSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNEITPEAREACAKLRDA--- 248 (369)
T ss_pred cCHHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhhcCHHHHHHHHHHHHc---
Confidence 3677777777753 35554443 22 1 3556777778899988875332233433333444434332
Q ss_pred cCCCceEEEEEeccc-cccCCchhhhhhHHHHHHHHHHHHHHHHhCCC
Q 012660 107 FYPETMIRFILVGNE-ILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNI 153 (459)
Q Consensus 107 ~~~~~~I~~I~VGNE-vl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl 153 (459)
+|.++|. ||.++- .+=...|+++-.+|...|.
T Consensus 249 --------Gv~l~NQsVLLrGV-------ND~~evl~~L~~~L~~~gV 281 (369)
T COG1509 249 --------GVPLLNQSVLLRGV-------NDDPEVLKELSRALFDAGV 281 (369)
T ss_pred --------Cceeecchheeccc-------CCCHHHHHHHHHHHHHcCC
Confidence 5778887 556662 1223456667777776663
No 104
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=22.23 E-value=2.5e+02 Score=28.32 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=44.5
Q ss_pred hhhhhc--CCceEEEEecc----chhHHHhhhHHHHHHHHHhhccccCCCceEEEEEeccccccCCchhhhhhHHHHHHH
Q 012660 67 LKLLSG--TDLKVSIMVQN----HEIIDIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPA 140 (459)
Q Consensus 67 L~A~~~--tgi~v~vGv~n----~~l~~~a~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~a 140 (459)
|.+++. .++||++.|.. +....+..+.+..+++ .++|..++..-.+.+|-+==|..... ......++..
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~f-i~~i~~~~~~~~~DGidiDwE~~~~~----~~d~~~~~~l 131 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKF-IDSIVSFLKKYGFDGIDIDWEYPGAR----GDDRENYTAL 131 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHH-HHHHHHHHHHcCCCeEEECCcCCCCC----ccHHHHHHHH
Confidence 455554 48999998865 2234454443332332 23343333333466666644443221 0124568889
Q ss_pred HHHHHHHHHhC
Q 012660 141 MHRIKKCLNAH 151 (459)
Q Consensus 141 m~~v~~aL~~~ 151 (459)
|+.+|++|.+.
T Consensus 132 l~~lr~~l~~~ 142 (334)
T smart00636 132 LKELREALDKE 142 (334)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 105
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.44 E-value=7e+02 Score=27.38 Aligned_cols=57 Identities=18% Similarity=0.347 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCceEeccccccccccccCCCCCccccCcchhhhhHHHHHHHhhcCCccccccccc
Q 012660 133 IWKNLVPAMHRIKKCLNAHNIHNIKVGTPLAMDIFQTTFPPSNGTFRSDISASVMEPLLQFLNRTKSFFFLDVYPY 208 (459)
Q Consensus 133 ~~~~Lv~am~~v~~aL~~~gl~~IkVsT~~~~~~l~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPy 208 (459)
+.++.+.+++.+|+++ .+|.++|.. +- +|| | +- +.-+...++|+.+.+ +-.+++|+|
T Consensus 345 t~e~~~~~v~~lr~~~-----p~i~i~tdi----Iv-GfP---g----ET-~edf~~Tl~~v~~l~-~d~~~~f~y 401 (509)
T PRK14327 345 TRESYLELVRKIKEAI-----PNVALTTDI----IV-GFP---N----ET-DEQFEETLSLYREVG-FDHAYTFIY 401 (509)
T ss_pred CHHHHHHHHHHHHHhC-----CCcEEeeeE----EE-eCC---C----CC-HHHHHHHHHHHHHcC-CCeEEEeee
Confidence 4577888888888763 235555432 22 354 1 21 255678889987654 223555554
No 106
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=21.39 E-value=3.1e+02 Score=26.50 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=47.5
Q ss_pred CHHHHHHHHHhCCCCeEEEecCCh--------hhhhhhh-cCCceEEEEeccchhHHHhhhHHHHHHHHHhhccccCCCc
Q 012660 41 SSYQSIESIKFLQAGSVKIYDANP--------EILKLLS-GTDLKVSIMVQNHEIIDIASKQKVADQWVHDNVLSFYPET 111 (459)
Q Consensus 41 s~~~vv~llks~~~~~VRlY~~d~--------~vL~A~~-~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~~~~~~ 111 (459)
+|.++++.+++.|++.+=+.|.|. ++++.+. ..+++|++|-....+ +.++.++.. +
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~~-------edv~~~l~~------G-- 100 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRSL-------ENAQEWLKR------G-- 100 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCCH-------HHHHHHHHc------C--
Confidence 688899999999999999998863 3665554 568999999764432 233344432 1
Q ss_pred eEEEEEeccccccC
Q 012660 112 MIRFILVGNEILSQ 125 (459)
Q Consensus 112 ~I~~I~VGNEvl~~ 125 (459)
...|++|.|.+.+
T Consensus 101 -a~~viigt~~~~~ 113 (233)
T cd04723 101 -ASRVIVGTETLPS 113 (233)
T ss_pred -CCeEEEcceeccc
Confidence 3357889998643
No 107
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.29 E-value=3.1e+02 Score=26.87 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCCh---------hhhhhhhcCCceEEEEeccchhHHHhhhHHHHHHHHHhhccccCCC
Q 012660 40 PSSYQSIESIKFLQAGSVKIYDANP---------EILKLLSGTDLKVSIMVQNHEIIDIASKQKVADQWVHDNVLSFYPE 110 (459)
Q Consensus 40 ps~~~vv~llks~~~~~VRlY~~d~---------~vL~A~~~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~~~~~ 110 (459)
.+|-++++.+++.|++.+=+.|.|. ++++.++..-++|.+|=.... .+.++.|+...
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGIrs-------~e~~~~~l~~G------- 95 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGIRS-------LDYAEKLRKLG------- 95 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCCCC-------HHHHHHHHHCC-------
Confidence 4788999999999999999999873 467777653367888755332 34455666532
Q ss_pred ceEEEEEeccccccCC
Q 012660 111 TMIRFILVGNEILSQS 126 (459)
Q Consensus 111 ~~I~~I~VGNEvl~~~ 126 (459)
+..|+||++.+.+.
T Consensus 96 --a~rvvigT~a~~~p 109 (241)
T PRK14114 96 --YRRQIVSSKVLEDP 109 (241)
T ss_pred --CCEEEECchhhCCH
Confidence 33478999988653
No 108
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.76 E-value=5.2e+02 Score=27.77 Aligned_cols=55 Identities=13% Similarity=0.272 Sum_probs=30.0
Q ss_pred ceEEecCCCCCCCCHHHHHHHHH---h-CCCCeEEEecCCh-----hhhhhhhcCC--c-eEEEEec
Q 012660 28 IGINYGKLGSNLPSSYQSIESIK---F-LQAGSVKIYDANP-----EILKLLSGTD--L-KVSIMVQ 82 (459)
Q Consensus 28 ~GvnYg~~~~nlps~~~vv~llk---s-~~~~~VRlY~~d~-----~vL~A~~~tg--i-~v~vGv~ 82 (459)
+|.+.+.+|.++|......++|+ . .++.+||+...+| +++++++..+ + .|.+|+.
T Consensus 207 ~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQ 273 (459)
T PRK14338 207 LGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQ 273 (459)
T ss_pred eeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcc
Confidence 45555555556654444444443 3 3566788765443 6777777643 2 3556653
No 109
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=20.72 E-value=1.6e+02 Score=25.96 Aligned_cols=44 Identities=25% Similarity=0.209 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC-----hhhhhhhhcCCceEEEEecc
Q 012660 40 PSSYQSIESIKFLQAGSVKIYDAN-----PEILKLLSGTDLKVSIMVQN 83 (459)
Q Consensus 40 ps~~~vv~llks~~~~~VRlY~~d-----~~vL~A~~~tgi~v~vGv~n 83 (459)
.+++++++..++.|++.|=+=|-+ +...+.++..||+|++|+-.
T Consensus 16 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 16 DSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 388999999999999988887764 24556667799999999975
No 110
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.48 E-value=6e+02 Score=26.89 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=29.0
Q ss_pred ceEEecCCCCCCCCHHHHHHHHH---h-CCCCeEEEecCC-----hhhhhhhhcCC---ceEEEEec
Q 012660 28 IGINYGKLGSNLPSSYQSIESIK---F-LQAGSVKIYDAN-----PEILKLLSGTD---LKVSIMVQ 82 (459)
Q Consensus 28 ~GvnYg~~~~nlps~~~vv~llk---s-~~~~~VRlY~~d-----~~vL~A~~~tg---i~v~vGv~ 82 (459)
+|.|.+.+|.+++......++|+ . .+..+||+.... .++|++++..+ -.+.+|+.
T Consensus 176 ~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQ 242 (418)
T PRK14336 176 LGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQ 242 (418)
T ss_pred EecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCC
Confidence 46665555555433223333332 2 345677876433 45677777643 34566664
No 111
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=20.43 E-value=6.2e+02 Score=24.13 Aligned_cols=99 Identities=14% Similarity=0.249 Sum_probs=57.7
Q ss_pred CHHHHHHHHHhCCCCeEEEe-cCC---hhhhhhhhcCCceEEEEeccchhHHHhhhHHHHHHHHHhhccccCCC-ceEEE
Q 012660 41 SSYQSIESIKFLQAGSVKIY-DAN---PEILKLLSGTDLKVSIMVQNHEIIDIASKQKVADQWVHDNVLSFYPE-TMIRF 115 (459)
Q Consensus 41 s~~~vv~llks~~~~~VRlY-~~d---~~vL~A~~~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~~~~~-~~I~~ 115 (459)
.|.+.++.++..|.+.|=+- .+. .++|+.++..|+++-|.+..+. .+ +.+.+|++. +.|.-
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~------------~~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PV------------EELEPYLDQVDMVLV 133 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G------------GGGTTTGCCSSEEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cc------------hHHHHHhhhcCEEEE
Confidence 46777777777777765332 221 2688888999999988886432 11 123344442 33333
Q ss_pred EEeccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCCCc-eEec
Q 012660 116 ILVGNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNIHN-IKVG 159 (459)
Q Consensus 116 I~VGNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~-IkVs 159 (459)
.+| |+=+.+ +.+.+..+..|+.+|+.+.+.|++- |.|.
T Consensus 134 MsV--~PG~~G----q~f~~~~~~KI~~l~~~~~~~~~~~~I~vD 172 (201)
T PF00834_consen 134 MSV--EPGFGG----QKFIPEVLEKIRELRKLIPENGLDFEIEVD 172 (201)
T ss_dssp ESS---TTTSS----B--HGGHHHHHHHHHHHHHHHTCGSEEEEE
T ss_pred EEe--cCCCCc----ccccHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 333 332222 4567889999999999999988644 4443
No 112
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.27 E-value=2.9e+02 Score=28.60 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCCeEEEe--cCCh-------------hh---hhhhhcCC-----ceEEEEeccchhHHHhhhHHHHHHH
Q 012660 43 YQSIESIKFLQAGSVKIY--DANP-------------EI---LKLLSGTD-----LKVSIMVQNHEIIDIASKQKVADQW 99 (459)
Q Consensus 43 ~~vv~llks~~~~~VRlY--~~d~-------------~v---L~A~~~tg-----i~v~vGv~n~~l~~~a~~~~~A~~w 99 (459)
++.+++|+..|+++|-+= +.+. ++ ++.++..| +.+|+|+|.+...++..+...+.+.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l 182 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKH 182 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhc
Confidence 466788888888876431 1222 22 33334445 4578899988777766554433221
Q ss_pred HHhhccccCCCceEEEEEe-ccccccCCchhhhhhHHHHHHHHHHHHHHHHhCCCCceEec
Q 012660 100 VHDNVLSFYPETMIRFILV-GNEILSQSSEEYKQIWKNLVPAMHRIKKCLNAHNIHNIKVG 159 (459)
Q Consensus 100 v~~~v~~~~~~~~I~~I~V-GNEvl~~~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~IkVs 159 (459)
=-++| .+-...+ -+..+.... .......-..-++.+++.|.++|+..-.|+
T Consensus 183 ~p~~i-------s~y~L~~~~gT~l~~~~--~~~~~~~~~~~~~~~~~~L~~~Gy~~yeis 234 (353)
T PRK05904 183 KINHI-------SFYSLEIKEGSILKKYH--YTIDEDKEAEQLNYIKAKFNKLNYKRYEVS 234 (353)
T ss_pred CCCEE-------EEEeeEecCCChHhhcC--CCCChHHHHHHHHHHHHHHHHcCCcEEech
Confidence 11111 1212221 111122110 000122334556778888999999764333
No 113
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.27 E-value=2.4e+02 Score=25.04 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC-------hhhhhhhhcC---CceEEEE--eccc
Q 012660 40 PSSYQSIESIKFLQAGSVKIYDAN-------PEILKLLSGT---DLKVSIM--VQNH 84 (459)
Q Consensus 40 ps~~~vv~llks~~~~~VRlY~~d-------~~vL~A~~~t---gi~v~vG--v~n~ 84 (459)
-+++++++..++.+.+.|=|=+.+ +.++++++.. .++|++| ++++
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~ 96 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQ 96 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChH
Confidence 456777777777677776665544 2466666654 4678888 5543
No 114
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=20.24 E-value=1.3e+02 Score=31.03 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=49.8
Q ss_pred hhhhhhhcCCceEEEEeccchhHHHhhhHHHHHHHHHhhccccCCCceEEEEEeccccccCCchhhhhhHHHHHHHHHHH
Q 012660 65 EILKLLSGTDLKVSIMVQNHEIIDIASKQKVADQWVHDNVLSFYPETMIRFILVGNEILSQSSEEYKQIWKNLVPAMHRI 144 (459)
Q Consensus 65 ~vL~A~~~tgi~v~vGv~n~~l~~~a~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~~Lv~am~~v 144 (459)
.||+++.++|-.+.+|=.- .+.. +++.|.+|+...+..++ +.|.+|+--|.-...+ +
T Consensus 176 ~VLkp~idsGkik~~Ge~~--~d~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgtagG-----------------a 232 (341)
T COG4213 176 KVLKPLIDSGKIKVVGEQW--TDGW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAGG-----------------A 232 (341)
T ss_pred HHHHHHhhCCceEEeeecc--cccc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchhHH-----------------H
Confidence 5899888888555577532 2233 45678888888888775 5599988877744333 1
Q ss_pred HHHHHhCCCCc-eEecc
Q 012660 145 KKCLNAHNIHN-IKVGT 160 (459)
Q Consensus 145 ~~aL~~~gl~~-IkVsT 160 (459)
-++|++.||++ ++||=
T Consensus 233 I~aL~a~Gl~g~vpVsG 249 (341)
T COG4213 233 IAALKAQGLAGKVPVSG 249 (341)
T ss_pred HHHHHhcccCCCCcccC
Confidence 25678889986 88664
Done!