BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012665
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 124 RQLAATRIQSIFRGYLARKALRALK-GIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQ 182
R AA IQ R Y+ RK + ++ + LQAL+RG VR + L+ +SI+ IQ
Sbjct: 815 RTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSII-IQKH 873
Query: 183 V 183
V
Sbjct: 874 V 874
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 208 KIIKMDSSCQRRWDDSTLT--KQEADAMFLSKKEAAIRRERIKEYAFSHRKSADSEQNK 264
+I+ M CQR W+D LT K E +++ L+++ AA R E IK Y H D + +
Sbjct: 171 EIVMM---CQRLWEDLGLTGIKLEINSLGLAEERAAHRVELIK-YLEQHADKLDDDAQR 225
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 306 IGKGLRLKNLQTKYHIDGLDSPVLFSRRSLHRKQNSLGDEKSFASSPVV 354
+G+GLR + + H+D S + SR S+ + GDE +AS+ V+
Sbjct: 122 VGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVM 170
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 306 IGKGLRLKNLQTKYHIDGLDSPVLFSRRSLHRKQNSLGDEKSFASSPVV 354
+G+GLR + + H+D S + SR S+ + GDE +AS+ V+
Sbjct: 122 VGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVM 170
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 306 IGKGLRLKNLQTKYHIDGLDSPVLFSRRSLHRKQNSLGDEKSFASSPVV 354
+G+GLR + + H+D S + SR S+ + GDE +AS+ V+
Sbjct: 124 VGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVM 172
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 306 IGKGLRLKNLQTKYHIDGLDSPVLFSRRSLHRKQNSLGDEKSFASSPVV 354
+G+GLR + + H+D S + SR S+ + GDE +AS+ V+
Sbjct: 120 VGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVM 168
>pdb|1UJQ|A Chain A, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|B Chain B, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|C Chain C, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|D Chain D, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1O5Q|A Chain A, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|B Chain B, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|C Chain C, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|D Chain D, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
Length = 305
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 161 NVRRQAFTTLKCLQSIVNIQSQVCAKRCQKAGSWHCDENKQLQTLRDKIIKMDSSCQRRW 220
NV R + K + ++I+ QV AKRC NK + + + + ++ ++ R
Sbjct: 98 NVARTVKSIAKAGAAALHIEDQVGAKRCGH------RPNKAIVSKEEMVDRIRAAVDART 151
Query: 221 DDSTLTKQEADAMFLSKKEAAIRR 244
D + + DA+ + EAA+ R
Sbjct: 152 DPNFVIMARTDALAVEGLEAALDR 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,630,046
Number of Sequences: 62578
Number of extensions: 419972
Number of successful extensions: 1276
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 12
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)