Query 012665
Match_columns 458
No_of_seqs 282 out of 559
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:02:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.5 7.5E-15 1.6E-19 126.8 6.6 76 343-423 26-102 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.8 2.9E-05 6.3E-10 48.9 3.2 20 126-145 2-21 (21)
3 KOG0160 Myosin class V heavy c 97.2 0.0011 2.5E-08 75.4 8.5 64 124-191 672-736 (862)
4 smart00015 IQ Short calmodulin 97.1 0.00046 9.9E-09 45.5 2.9 22 124-145 2-23 (26)
5 KOG0520 Uncharacterized conser 95.2 0.016 3.4E-07 66.9 3.7 68 124-191 809-884 (975)
6 PTZ00014 myosin-A; Provisional 95.0 0.039 8.4E-07 63.5 6.3 40 127-166 779-819 (821)
7 KOG0160 Myosin class V heavy c 94.5 0.12 2.6E-06 59.5 8.5 65 124-191 695-759 (862)
8 PF00612 IQ: IQ calmodulin-bin 91.8 0.19 4.2E-06 31.4 2.7 19 148-166 2-20 (21)
9 COG5022 Myosin heavy chain [Cy 90.5 0.51 1.1E-05 56.7 6.6 64 125-189 745-809 (1463)
10 KOG2128 Ras GTPase-activating 89.6 0.8 1.7E-05 54.9 7.2 65 127-191 567-640 (1401)
11 smart00015 IQ Short calmodulin 85.4 0.88 1.9E-05 29.8 2.5 20 147-166 3-22 (26)
12 PTZ00014 myosin-A; Provisional 78.4 4.9 0.00011 46.7 6.9 40 149-191 779-818 (821)
13 KOG0164 Myosin class I heavy c 78.2 5.6 0.00012 45.5 6.9 55 126-191 697-752 (1001)
14 KOG0520 Uncharacterized conser 76.8 2.4 5.3E-05 49.6 3.9 62 128-189 836-930 (975)
15 KOG4427 E3 ubiquitin protein l 71.9 3.9 8.4E-05 46.9 3.8 23 123-145 28-50 (1096)
16 KOG0942 E3 ubiquitin protein l 68.9 3.8 8.2E-05 47.7 2.9 24 122-145 26-49 (1001)
17 KOG0377 Protein serine/threoni 68.6 8.9 0.00019 41.8 5.4 35 123-157 15-49 (631)
18 KOG2128 Ras GTPase-activating 65.4 12 0.00025 45.6 6.1 60 129-191 539-610 (1401)
19 KOG0163 Myosin class VI heavy 58.9 12 0.00027 43.1 4.5 33 125-157 813-846 (1259)
20 KOG0161 Myosin class II heavy 47.1 28 0.0006 44.2 5.3 38 149-186 775-812 (1930)
21 KOG0162 Myosin class I heavy c 41.8 21 0.00046 41.2 3.0 22 127-148 698-719 (1106)
22 COG5022 Myosin heavy chain [Cy 38.3 1.6E+02 0.0035 36.6 9.6 64 125-189 793-858 (1463)
23 KOG0165 Microtubule-associated 36.7 54 0.0012 38.2 5.1 26 123-148 941-967 (1023)
24 KOG0161 Myosin class II heavy 35.8 42 0.0009 42.8 4.4 36 129-164 777-816 (1930)
25 PF08763 Ca_chan_IQ: Voltage g 34.8 41 0.00089 24.3 2.5 21 124-144 8-28 (35)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.55 E-value=7.5e-15 Score=126.76 Aligned_cols=76 Identities=50% Similarity=0.578 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCccchhhhhhHHHhhhccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCC-CCCCCCCCC
Q 012665 343 GDEKSFASSPVVPTYMAATESAKAKARSMSSPKIRPGTFDSYSESYSPCKKKLSLMSSLTSEVPSYSNIG-RPSAYQQRS 421 (458)
Q Consensus 343 ~dD~Sl~ssp~~PsYMa~T~SakAK~Rs~S~PkqR~~~~~~~~~~~~~~kkRlS~p~s~~~~~~~~~~~g-~~s~~~~RS 421 (458)
..++++. . +|+|||+|||||||+|+||+||||++..+.. ...+.+||+|||...++...+..... ....++|||
T Consensus 26 ~~~~s~~-~--~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~--~~~~~~kR~S~~~~~~~~~~~~~~~~~~~~~~~qrS 100 (102)
T PF13178_consen 26 CRRSSFG-S--LPSYMAATESAKAKARSQSAPRQRPGTPERA--EKQSSKKRLSLPGSSNSGSSSSRSPRTSSSSQSQRS 100 (102)
T ss_pred cccCcCC-C--CCCccchhhhhhhhhhccCCcccCCCccccc--cccccccccccCCCCCCCcCCCCCCccccccccCCC
Confidence 3444444 2 9999999999999999999999999876643 45678999999976544443211111 234556999
Q ss_pred CC
Q 012665 422 PS 423 (458)
Q Consensus 422 Ps 423 (458)
|+
T Consensus 101 ps 102 (102)
T PF13178_consen 101 PS 102 (102)
T ss_pred CC
Confidence 86
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.76 E-value=2.9e-05 Score=48.88 Aligned_cols=20 Identities=60% Similarity=0.783 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhhhHHHHHHH
Q 012665 126 LAATRIQSIFRGYLARKALR 145 (458)
Q Consensus 126 ~AAi~IQsafRGylARral~ 145 (458)
.|||.||+.||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999875
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.16 E-value=0.0011 Score=75.44 Aligned_cols=64 Identities=30% Similarity=0.321 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHH-HhhhHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 012665 124 RQLAATRIQSIFRGYLARKALR-ALKGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 124 ee~AAi~IQsafRGylARral~-alkglVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~~ 191 (458)
...+++.||..||||+.|+.|. ..++++.+|+++||.++|+ .++ ..-+++.+|..+|+...|+.
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~-~~~aai~~q~~~r~~~~r~~ 736 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR---ETE-REAAAIGIQKECRSYLNRRR 736 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hhH-HHHHHHHhHHHHHHHHHHHH
Confidence 3445688999999999999998 5568899999999999999 222 66777888888887766654
No 4
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.12 E-value=0.00046 Score=45.47 Aligned_cols=22 Identities=50% Similarity=0.659 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHH
Q 012665 124 RQLAATRIQSIFRGYLARKALR 145 (458)
Q Consensus 124 ee~AAi~IQsafRGylARral~ 145 (458)
.+.+|+.||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4678999999999999999984
No 5
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=95.16 E-value=0.016 Score=66.85 Aligned_cols=68 Identities=29% Similarity=0.324 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhh-hHHHHHHHhhhhHHHHHHHHHHH-------HhhHHHHHHHHHHHhhhhhc
Q 012665 124 RQLAATRIQSIFRGYLARKALRALK-GIVKLQALIRGRNVRRQAFTTLK-------CLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 124 ee~AAi~IQsafRGylARral~alk-glVrLQalvRG~~vRrqa~~tlr-------~~qa~v~iQs~vRa~r~r~~ 191 (458)
...||..||.-||||+.|+.+..++ =+|++|+-|||+.+|+++..... -+-++-++|+-+|+++.+..
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~ 884 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRAL 884 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccc
Confidence 4567799999999999999999655 69999999999999999973332 44566677777777776665
No 6
>PTZ00014 myosin-A; Provisional
Probab=95.03 E-value=0.039 Score=63.46 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=35.3
Q ss_pred HHHHHHHhhhhhHHHHHHH-HhhhHHHHHHHhhhhHHHHHH
Q 012665 127 AATRIQSIFRGYLARKALR-ALKGIVKLQALIRGRNVRRQA 166 (458)
Q Consensus 127 AAi~IQsafRGylARral~-alkglVrLQalvRG~~vRrqa 166 (458)
.++.||+++|||++|+.|. ...++++||+.+||+++++..
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999998 566899999999999988754
No 7
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=94.54 E-value=0.12 Score=59.52 Aligned_cols=65 Identities=26% Similarity=0.218 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 012665 124 RQLAATRIQSIFRGYLARKALRALKGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 124 ee~AAi~IQsafRGylARral~alkglVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~~ 191 (458)
...+++.||..+||+++|+........+.+|..+|++..|+++ .....+++.+|+.+|+..+|..
T Consensus 695 ~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~e 759 (862)
T KOG0160|consen 695 LRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARNE 759 (862)
T ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccc
Confidence 3456699999999999998222455778889999999999999 5556788899999999988874
No 8
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=91.82 E-value=0.19 Score=31.42 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.9
Q ss_pred hhHHHHHHHhhhhHHHHHH
Q 012665 148 KGIVKLQALIRGRNVRRQA 166 (458)
Q Consensus 148 kglVrLQalvRG~~vRrqa 166 (458)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999986
No 9
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=90.52 E-value=0.51 Score=56.75 Aligned_cols=64 Identities=30% Similarity=0.328 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHH-HhhhHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Q 012665 125 QLAATRIQSIFRGYLARKALR-ALKGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQ 189 (458)
Q Consensus 125 e~AAi~IQsafRGylARral~-alkglVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r 189 (458)
...+++||+++|||+.|+.+. +++.+-.+|.+.+|..+++.....+ -...+..+|..++...-|
T Consensus 745 ~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~r 809 (1463)
T COG5022 745 DNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYEL-KWRLFIKLQPLLSLLGSR 809 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccch-HHHhHHHhhHHhHHHhhH
Confidence 456899999999999999887 8899999999999988886653222 344556666666654433
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=89.64 E-value=0.8 Score=54.91 Aligned_cols=65 Identities=32% Similarity=0.402 Sum_probs=53.7
Q ss_pred HHHHHHHhhhhhHH---HH-HHH-HhhhHHHHHHHhhhhHHHHHHHHH----HHHhhHHHHHHHHHHHhhhhhc
Q 012665 127 AATRIQSIFRGYLA---RK-ALR-ALKGIVKLQALIRGRNVRRQAFTT----LKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 127 AAi~IQsafRGylA---Rr-al~-alkglVrLQalvRG~~vRrqa~~t----lr~~qa~v~iQs~vRa~r~r~~ 191 (458)
.-+.||.+.|||+. +. .+. ..+-+|++|++.||+++|+.+... ..||...+.||+-+|.+..|..
T Consensus 567 ~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~ 640 (1401)
T KOG2128|consen 567 FVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKD 640 (1401)
T ss_pred hHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchH
Confidence 45789999999993 22 233 677999999999999999998843 4599999999999999987755
No 11
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=85.36 E-value=0.88 Score=29.78 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.6
Q ss_pred hhhHHHHHHHhhhhHHHHHH
Q 012665 147 LKGIVKLQALIRGRNVRRQA 166 (458)
Q Consensus 147 lkglVrLQalvRG~~vRrqa 166 (458)
.+.++.||+.+||+.+|+++
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999999987
No 12
>PTZ00014 myosin-A; Provisional
Probab=78.36 E-value=4.9 Score=46.69 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=33.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 012665 149 GIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 149 glVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~~ 191 (458)
-++.||+.+||+..|+++ ++..++++.||+.+|++..++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999999999 4457899999999999887653
No 13
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=78.17 E-value=5.6 Score=45.53 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhHHHH-HHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 012665 126 LAATRIQSIFRGYLARKALRALKGIVKL-QALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 126 ~AAi~IQsafRGylARral~alkglVrL-QalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~~ 191 (458)
.-++.||.++||+++|..|+.++....+ + -.|.+.++-- +-.||.++|+.+.++.
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks~----------v~el~~~~rg~k~~r~ 752 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKSY----------VQELQRRFRGAKQMRD 752 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----------HHHHHHHHHhhhhccc
Confidence 3478999999999999999987754444 4 5564443332 3346678888776655
No 14
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=76.82 E-value=2.4 Score=49.60 Aligned_cols=62 Identities=26% Similarity=0.287 Sum_probs=43.4
Q ss_pred HHHHHHhhhhhHHHHHHHH-hhhHH----------HHHHHhhhhHHHHHH----------------------HHHHHHhh
Q 012665 128 ATRIQSIFRGYLARKALRA-LKGIV----------KLQALIRGRNVRRQA----------------------FTTLKCLQ 174 (458)
Q Consensus 128 Ai~IQsafRGylARral~a-lkglV----------rLQalvRG~~vRrqa----------------------~~tlr~~q 174 (458)
+|+||+++|||-.|+.|+. ..++- ++|.-+||+..|... ...-+--+
T Consensus 836 ~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~~ 915 (975)
T KOG0520|consen 836 IVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERLTR 915 (975)
T ss_pred cccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999883 33221 226667776655432 22334568
Q ss_pred HHHHHHHHHHHhhhh
Q 012665 175 SIVNIQSQVCAKRCQ 189 (458)
Q Consensus 175 a~v~iQs~vRa~r~r 189 (458)
|+++||+.+|....+
T Consensus 916 A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 916 AVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHhcCHHHH
Confidence 999999999987766
No 15
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.91 E-value=3.9 Score=46.93 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH
Q 012665 123 IRQLAATRIQSIFRGYLARKALR 145 (458)
Q Consensus 123 ~ee~AAi~IQsafRGylARral~ 145 (458)
+.+.||+.||...|||++|+.+.
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999887
No 16
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.88 E-value=3.8 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Q 012665 122 EIRQLAATRIQSIFRGYLARKALR 145 (458)
Q Consensus 122 ~~ee~AAi~IQsafRGylARral~ 145 (458)
.++|.+||+||+.+|||++|+..+
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHH
Confidence 467889999999999999999876
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=68.56 E-value=8.9 Score=41.81 Aligned_cols=35 Identities=31% Similarity=0.167 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHHHHh
Q 012665 123 IRQLAATRIQSIFRGYLARKALRALKGIVKLQALI 157 (458)
Q Consensus 123 ~ee~AAi~IQsafRGylARral~alkglVrLQalv 157 (458)
+--.|||.||.-||+|.||...+..-...-+|++=
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqslE 49 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSLE 49 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHh
Confidence 44679999999999999999888666666677753
No 18
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=65.36 E-value=12 Score=45.59 Aligned_cols=60 Identities=28% Similarity=0.300 Sum_probs=47.0
Q ss_pred HHHHHhhhhhHHHHHHHHhh--------hHHHHHHHhhhhHHHHHHH----HHHHHhhHHHHHHHHHHHhhhhhc
Q 012665 129 TRIQSIFRGYLARKALRALK--------GIVKLQALIRGRNVRRQAF----TTLKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 129 i~IQsafRGylARral~alk--------glVrLQalvRG~~vRrqa~----~tlr~~qa~v~iQs~vRa~r~r~~ 191 (458)
.+||+..|||..|..++... .++.+|+++||.++ ++ .......-++.+|+..|+...|..
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~ 610 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKK 610 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 56799999999999887433 67889999999886 22 222345568999999999998877
No 19
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=58.89 E-value=12 Score=43.12 Aligned_cols=33 Identities=45% Similarity=0.650 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHH-HhhhHHHHHHHh
Q 012665 125 QLAATRIQSIFRGYLARKALR-ALKGIVKLQALI 157 (458)
Q Consensus 125 e~AAi~IQsafRGylARral~-alkglVrLQalv 157 (458)
..+.+++|...||||+|+.++ .+-|++++-+|.
T Consensus 813 ae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 813 AECVLKAQRIARGYLARKRHRPRIAGIRKINALL 846 (1259)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 344599999999999999998 777877775543
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=47.11 E-value=28 Score=44.22 Aligned_cols=38 Identities=34% Similarity=0.308 Sum_probs=21.7
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 012665 149 GIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAK 186 (458)
Q Consensus 149 glVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~ 186 (458)
-|+.+||.|||+++|+.+..-...+.++..||..+|.+
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~ 812 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAY 812 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555566555555
No 21
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=41.84 E-value=21 Score=41.24 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHhh
Q 012665 127 AATRIQSIFRGYLARKALRALK 148 (458)
Q Consensus 127 AAi~IQsafRGylARral~alk 148 (458)
=|.+||.|||.|++||.+-.++
T Consensus 698 ~A~~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 698 MARRIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999888666
No 22
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=38.29 E-value=1.6e+02 Score=36.61 Aligned_cols=64 Identities=23% Similarity=0.199 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHH-HhhhHHHHH-HHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Q 012665 125 QLAATRIQSIFRGYLARKALR-ALKGIVKLQ-ALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQ 189 (458)
Q Consensus 125 e~AAi~IQsafRGylARral~-alkglVrLQ-alvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r 189 (458)
..++++||..+|.+.-|..++ .+..+..|| .+.++..++-. ..--..+.+.+-+|+.+|+...+
T Consensus 793 ~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~-~e~~~~~~~~~L~~~~~rs~~~~ 858 (1463)
T COG5022 793 WRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRET-EEVEFSLKAEVLIQKFGRSLKAK 858 (1463)
T ss_pred HHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHhhhhh
Confidence 445566666666666666666 455566666 33333333332 23333445555556555554443
No 23
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=36.67 E-value=54 Score=38.16 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH-Hhh
Q 012665 123 IRQLAATRIQSIFRGYLARKALR-ALK 148 (458)
Q Consensus 123 ~ee~AAi~IQsafRGylARral~-alk 148 (458)
....||+.||.+.|||++||.|. .+.
T Consensus 941 nkKkaavviqkmirgfiarrkfqmeis 967 (1023)
T KOG0165|consen 941 NKKKAAVVIQKMIRGFIARRKFQMEIS 967 (1023)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999998 443
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=35.80 E-value=42 Score=42.77 Aligned_cols=36 Identities=42% Similarity=0.516 Sum_probs=27.2
Q ss_pred HHHHHhhhhhHHHHHHHH----hhhHHHHHHHhhhhHHHH
Q 012665 129 TRIQSIFRGYLARKALRA----LKGIVKLQALIRGRNVRR 164 (458)
Q Consensus 129 i~IQsafRGylARral~a----lkglVrLQalvRG~~vRr 164 (458)
+.+|+.+||||+|+.|.. +-+|..||.=+|-+..-|
T Consensus 777 ~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 777 TLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 778999999999999872 347888887666554333
No 25
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=34.81 E-value=41 Score=24.33 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHH
Q 012665 124 RQLAATRIQSIFRGYLARKAL 144 (458)
Q Consensus 124 ee~AAi~IQsafRGylARral 144 (458)
+--||..||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999998863
Done!