Query 012665
Match_columns 458
No_of_seqs 282 out of 559
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:51:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 98.9 2.6E-09 8.8E-14 81.5 7.2 53 123-176 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.6 8.4E-08 2.9E-12 70.3 6.0 41 126-166 4-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.4 4.7E-07 1.6E-11 103.8 9.5 69 122-191 813-882 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.4 7.7E-07 2.6E-11 102.0 10.3 66 125-191 768-834 (1080)
5 2l53_B CAM, voltage-gated sodi 97.9 5.1E-06 1.7E-10 56.7 2.8 23 123-145 4-26 (31)
6 2kxw_B Sodium channel protein 97.8 6.2E-06 2.1E-10 54.6 1.7 22 123-144 4-25 (27)
7 1n2d_C IQ2 and IQ3 motifs from 97.5 0.00019 6.5E-09 52.3 6.2 43 147-190 3-45 (48)
8 2ix7_C Myosin-5A; contractIle 96.4 0.0052 1.8E-07 46.3 5.8 42 147-191 5-46 (58)
9 1wdc_A Scallop myosin; calcium 96.3 0.0074 2.5E-07 46.6 6.0 38 127-164 8-49 (64)
10 2bl0_A Major plasmodial myosin 96.3 0.0067 2.3E-07 46.7 5.7 41 150-190 7-47 (63)
11 3gn4_A Myosin-VI; unconvention 96.3 0.0042 1.4E-07 56.3 5.0 35 123-157 43-78 (148)
12 1wdc_A Scallop myosin; calcium 96.2 0.0094 3.2E-07 46.0 6.4 44 148-191 7-50 (64)
13 2bl0_A Major plasmodial myosin 96.1 0.0068 2.3E-07 46.7 4.8 41 126-166 5-49 (63)
14 1kk8_A Myosin heavy chain, str 95.9 0.0081 2.8E-07 67.4 6.3 41 126-166 780-824 (837)
15 1i84_S Smooth muscle myosin he 93.6 0.06 2.1E-06 62.2 5.5 41 126-166 793-837 (1184)
16 4dck_A Sodium channel protein 91.5 0.14 4.7E-06 47.3 4.0 27 120-146 125-151 (168)
17 1kk8_A Myosin heavy chain, str 89.9 0.51 1.7E-05 53.1 7.5 44 148-191 780-823 (837)
18 1i84_S Smooth muscle myosin he 83.3 1.7 5.9E-05 50.3 7.2 44 148-191 793-836 (1184)
19 1w7j_A Myosin VA; motor protei 82.8 0.86 2.9E-05 50.9 4.3 24 125-148 768-791 (795)
20 4anj_A Unconventional myosin-V 70.9 4.7 0.00016 46.4 6.1 41 125-166 775-816 (1052)
21 3gn4_A Myosin-VI; unconvention 41.3 44 0.0015 30.1 5.8 20 148-167 46-65 (148)
22 2f3y_B Voltage-dependent L-typ 29.3 30 0.001 22.4 2.0 19 127-145 4-22 (26)
23 2be6_D Voltage-dependent L-typ 26.2 45 0.0015 23.3 2.5 22 124-145 10-31 (37)
24 3dvk_B Voltage-dependent R-typ 25.7 25 0.00086 22.3 1.1 18 124-141 5-22 (23)
25 4anj_A Unconventional myosin-V 21.5 1.2E+02 0.0042 34.9 6.5 43 146-191 773-815 (1052)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.91 E-value=2.6e-09 Score=81.54 Aligned_cols=53 Identities=28% Similarity=0.407 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhh-hHHHHHHHhhhhHHHHHHHHHHHHhhHH
Q 012665 123 IRQLAATRIQSIFRGYLARKALRALK-GIVKLQALIRGRNVRRQAFTTLKCLQSI 176 (458)
Q Consensus 123 ~ee~AAi~IQsafRGylARral~alk-glVrLQalvRG~~vRrqa~~tlr~~qa~ 176 (458)
+.+.|||.||+.||||++|+.|..++ +++.||+.+||+.+|+.+ ..++...++
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYA-KFLRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCc
Confidence 35789999999999999999999665 899999999999999999 455555554
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.57 E-value=8.4e-08 Score=70.32 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhh---hHHHHHHHhhhhHHHHHH
Q 012665 126 LAATRIQSIFRGYLARKALRALK---GIVKLQALIRGRNVRRQA 166 (458)
Q Consensus 126 ~AAi~IQsafRGylARral~alk---glVrLQalvRG~~vRrqa 166 (458)
.|||.||+.+|||++|+.+..++ ..+.||+.+||+.+|+.+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 47899999999999999998544 899999999999999876
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.40 E-value=4.7e-07 Score=103.75 Aligned_cols=69 Identities=29% Similarity=0.262 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH-hhhHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 012665 122 EIRQLAATRIQSIFRGYLARKALRA-LKGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 122 ~~ee~AAi~IQsafRGylARral~a-lkglVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~~ 191 (458)
.+++.||++||+.||||++|+.|.. ..+++.||+.+||+.+|+++ ..++...+++.||+.+|++..|+.
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~-~~lr~~~aav~IQ~~~Rg~l~R~~ 882 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKY-QMMLREHKSIIIQKHVRGWLARVH 882 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999994 55899999999999999988 445556677777777777766654
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.38 E-value=7.7e-07 Score=102.01 Aligned_cols=66 Identities=29% Similarity=0.386 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHh-hhHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 012665 125 QLAATRIQSIFRGYLARKALRAL-KGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 125 e~AAi~IQsafRGylARral~al-kglVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~~ 191 (458)
..||+.||+.||||++|+.|+.+ .+++.||+.+||+.+|+.+ ..++...|++.||+.+|++.+|+.
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~ 834 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKR 834 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHHH
Confidence 56899999999999999999954 5899999999999999998 567889999999999999998876
No 5
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.92 E-value=5.1e-06 Score=56.66 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH
Q 012665 123 IRQLAATRIQSIFRGYLARKALR 145 (458)
Q Consensus 123 ~ee~AAi~IQsafRGylARral~ 145 (458)
.||.+|+.||.|||+||.|+.+.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 58999999999999999998865
No 6
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.81 E-value=6.2e-06 Score=54.62 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHH
Q 012665 123 IRQLAATRIQSIFRGYLARKAL 144 (458)
Q Consensus 123 ~ee~AAi~IQsafRGylARral 144 (458)
.||.||+.||.|||+||.|+.+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5899999999999999998753
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00019 Score=52.26 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=37.9
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 012665 147 LKGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQK 190 (458)
Q Consensus 147 lkglVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~ 190 (458)
.+.++.||+.+||.++|+++ ..++...+++.||+.+|++.+|+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk 45 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHH
Confidence 35789999999999999999 55667789999999999998875
No 8
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=96.44 E-value=0.0052 Score=46.32 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=36.2
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 012665 147 LKGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 147 lkglVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~~ 191 (458)
...+|.||+.+||+.+|+.+. +...+++.||+.+|++.+|+.
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk~~~---~~r~aai~IQ~~~Rg~~aR~~ 46 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRKRYL---CMQRAAITVQRYVRGYQARCY 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999993 344799999999999988866
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.29 E-value=0.0074 Score=46.56 Aligned_cols=38 Identities=39% Similarity=0.493 Sum_probs=19.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHh----hhHHHHHHHhhhhHHHH
Q 012665 127 AATRIQSIFRGYLARKALRAL----KGIVKLQALIRGRNVRR 164 (458)
Q Consensus 127 AAi~IQsafRGylARral~al----kglVrLQalvRG~~vRr 164 (458)
..+.||+..||||+|+.|..+ .++..||.-+|++..++
T Consensus 8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666666666666665532 23444444444444443
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.28 E-value=0.0067 Score=46.71 Aligned_cols=41 Identities=24% Similarity=0.064 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 012665 150 IVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQK 190 (458)
Q Consensus 150 lVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~ 190 (458)
++.+|+.+||+++|+.+...+...+|+..||..+|++...+
T Consensus 7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555555555555555555555556666666655443
No 11
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.25 E-value=0.0042 Score=56.28 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH-HhhhHHHHHHHh
Q 012665 123 IRQLAATRIQSIFRGYLARKALR-ALKGIVKLQALI 157 (458)
Q Consensus 123 ~ee~AAi~IQsafRGylARral~-alkglVrLQalv 157 (458)
-...|+|+||++.||||+|+.++ .+.|++++.+|.
T Consensus 43 yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 43 YRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35677899999999999999999 889999997764
No 12
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.24 E-value=0.0094 Score=45.96 Aligned_cols=44 Identities=23% Similarity=0.114 Sum_probs=39.6
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 012665 148 KGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 148 kglVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~~ 191 (458)
.-++.+|+.+||+++|+.+...+...+|+..||..+|++...+.
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45889999999999999999988889999999999999887654
No 13
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.09 E-value=0.0068 Score=46.66 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHh----hhHHHHHHHhhhhHHHHHH
Q 012665 126 LAATRIQSIFRGYLARKALRAL----KGIVKLQALIRGRNVRRQA 166 (458)
Q Consensus 126 ~AAi~IQsafRGylARral~al----kglVrLQalvRG~~vRrqa 166 (458)
...+.||+..||||+|+.|..+ .++..||.-+|++..++.-
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4569999999999999999844 4777889999998887754
No 14
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=95.89 E-value=0.0081 Score=67.43 Aligned_cols=41 Identities=37% Similarity=0.417 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHh----hhHHHHHHHhhhhHHHHHH
Q 012665 126 LAATRIQSIFRGYLARKALRAL----KGIVKLQALIRGRNVRRQA 166 (458)
Q Consensus 126 ~AAi~IQsafRGylARral~al----kglVrLQalvRG~~vRrqa 166 (458)
.+|+.||+.+||||+|+.|+.+ .+++.||.-+||+++||..
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 4678999999999999999855 4788888888888888765
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.55 E-value=0.06 Score=62.24 Aligned_cols=41 Identities=29% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHh----hhHHHHHHHhhhhHHHHHH
Q 012665 126 LAATRIQSIFRGYLARKALRAL----KGIVKLQALIRGRNVRRQA 166 (458)
Q Consensus 126 ~AAi~IQsafRGylARral~al----kglVrLQalvRG~~vRrqa 166 (458)
.+++.||+.+|||++|+.|..+ .+++.||..+||+..+|..
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4679999999999999999854 4899999999999998764
No 16
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=91.49 E-value=0.14 Score=47.26 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 012665 120 EKEIRQLAATRIQSIFRGYLARKALRA 146 (458)
Q Consensus 120 ~~~~ee~AAi~IQsafRGylARral~a 146 (458)
.+..|+.||+.||.+||.|+.|+.+..
T Consensus 125 ~~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 125 RRKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 456789999999999999999988764
No 17
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=89.92 E-value=0.51 Score=53.06 Aligned_cols=44 Identities=23% Similarity=0.114 Sum_probs=38.8
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 012665 148 KGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 148 kglVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~~ 191 (458)
+.++.||+.+||++.|+++...+....|++.||..+|++..++.
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~ 823 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35788999999999999997777778999999999999988765
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=83.32 E-value=1.7 Score=50.26 Aligned_cols=44 Identities=27% Similarity=0.177 Sum_probs=38.5
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 012665 148 KGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 148 kglVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~~ 191 (458)
..++.||+.+||++.|+.+...+....+++.||+.+|++..++.
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35788999999999999998777788999999999999977653
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=82.78 E-value=0.86 Score=50.94 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhh
Q 012665 125 QLAATRIQSIFRGYLARKALRALK 148 (458)
Q Consensus 125 e~AAi~IQsafRGylARral~alk 148 (458)
..+|+.||+++||||+|+.|+.++
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999765
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=70.92 E-value=4.7 Score=46.42 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhh-hHHHHHHHhhhhHHHHHH
Q 012665 125 QLAATRIQSIFRGYLARKALRALK-GIVKLQALIRGRNVRRQA 166 (458)
Q Consensus 125 e~AAi~IQsafRGylARral~alk-glVrLQalvRG~~vRrqa 166 (458)
+.+|+.||. +||||+|+.|+.++ ..+.+|.+-|+...|+..
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777775 69999999998544 777788777776655544
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=41.29 E-value=44 Score=30.05 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=17.7
Q ss_pred hhHHHHHHHhhhhHHHHHHH
Q 012665 148 KGIVKLQALIRGRNVRRQAF 167 (458)
Q Consensus 148 kglVrLQalvRG~~vRrqa~ 167 (458)
..++++|..|||+++|++..
T Consensus 46 ~~~i~iQktvR~~L~rkkhk 65 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHK 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 37888999999999999994
No 22
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=29.31 E-value=30 Score=22.43 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=15.7
Q ss_pred HHHHHHHhhhhhHHHHHHH
Q 012665 127 AATRIQSIFRGYLARKALR 145 (458)
Q Consensus 127 AAi~IQsafRGylARral~ 145 (458)
|...||-.||.|..|+.-.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5578999999999988643
No 23
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=26.19 E-value=45 Score=23.35 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHH
Q 012665 124 RQLAATRIQSIFRGYLARKALR 145 (458)
Q Consensus 124 ee~AAi~IQsafRGylARral~ 145 (458)
+--|...||-.||-|..|+.-.
T Consensus 10 KfYatfLIQdyFRkfkkrke~~ 31 (37)
T 2be6_D 10 KFYATFLIQEYFRKFKKRKEQG 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999998753
No 24
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=25.68 E-value=25 Score=22.28 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhhhHHH
Q 012665 124 RQLAATRIQSIFRGYLAR 141 (458)
Q Consensus 124 ee~AAi~IQsafRGylAR 141 (458)
+--|+..||-.||-+..|
T Consensus 5 KiYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 357899999999988776
No 25
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=21.53 E-value=1.2e+02 Score=34.95 Aligned_cols=43 Identities=5% Similarity=-0.074 Sum_probs=29.6
Q ss_pred HhhhHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 012665 146 ALKGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 191 (458)
Q Consensus 146 alkglVrLQalvRG~~vRrqa~~tlr~~qa~v~iQs~vRa~r~r~~ 191 (458)
.+..++.+|..+||.++|+++. +..++++.||...|.++.|..
T Consensus 773 ~~~~~~~~iq~~r~~l~r~~~~---k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 773 DPDHLAELVKRVNHWLICSRWK---KVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4556677766799999999994 334566777766666555543
Done!