Query 012666
Match_columns 458
No_of_seqs 492 out of 1593
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 13:53:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 7.6E-30 2.6E-34 246.0 30.6 358 27-456 22-397 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 6.4E-31 2.2E-35 254.6 19.2 355 34-456 31-399 (451)
3 4aps_A DI-OR tripeptide H+ sym 100.0 2.6E-27 9E-32 231.7 25.1 370 32-457 14-439 (491)
4 2gfp_A EMRD, multidrug resista 100.0 1.9E-27 6.6E-32 224.4 22.8 337 35-457 4-343 (375)
5 4gc0_A D-xylose-proton symport 99.9 8.6E-26 2.9E-30 221.0 19.5 366 48-456 29-422 (491)
6 2cfq_A Lactose permease; trans 99.9 1.6E-24 5.4E-29 207.2 13.1 354 30-456 6-365 (417)
7 2xut_A Proton/peptide symporte 99.9 9.4E-23 3.2E-27 201.1 15.6 172 33-241 14-197 (524)
8 4gc0_A D-xylose-proton symport 99.4 8.3E-13 2.8E-17 128.7 10.6 182 45-253 291-473 (491)
9 1pw4_A Glycerol-3-phosphate tr 99.4 8.8E-13 3E-17 127.0 9.6 179 31-243 252-434 (451)
10 2cfq_A Lactose permease; trans 99.3 1.9E-11 6.3E-16 116.5 11.9 168 46-250 235-407 (417)
11 3o7q_A L-fucose-proton symport 99.2 1.9E-11 6.4E-16 117.2 8.1 163 33-235 260-425 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.2 6.9E-11 2.4E-15 115.1 10.0 175 45-247 297-476 (491)
13 2gfp_A EMRD, multidrug resista 98.8 7.4E-08 2.5E-12 90.0 15.1 101 337-456 40-140 (375)
14 2xut_A Proton/peptide symporte 98.7 1.2E-07 4E-12 93.0 13.3 143 285-456 12-164 (524)
15 2g9p_A Antimicrobial peptide l 52.6 10 0.00034 18.1 1.8 14 351-364 2-15 (26)
16 2dw3_A Intrinsic membrane prot 39.8 76 0.0026 20.8 5.1 34 220-253 31-64 (77)
17 2nrg_A Intrinsic membrane prot 27.6 1.1E+02 0.0037 20.4 4.3 34 220-253 32-65 (82)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=7.6e-30 Score=246.02 Aligned_cols=358 Identities=12% Similarity=0.060 Sum_probs=251.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHH
Q 012666 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC 106 (458)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~ 106 (458)
+..++.+..++...+...+......+.+|.+.+++|.+..+.+++.+++.++..++.++.|+++| |+|||+.+++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~l~~~ 97 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAGIITG 97 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH----HSCHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhcchHHHHHH
Confidence 33455556666666666677778888899999999999999999999999999999999999999 99999988874
Q ss_pred HHHHHHHHHHHH---hhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHH
Q 012666 107 GAISIAVAVLLI---GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (458)
Q Consensus 107 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (458)
. +...++.++. ..++++ +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+
T Consensus 98 ~-~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~ 159 (438)
T 3o7q_A 98 L-FLYALGAALFWPAAEIMNY---------------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQ 159 (438)
T ss_dssp H-HHHHHHHHHHHHHHHTTCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHH--HHHHHHH
T ss_pred H-HHHHHHHHHHHhccccccH---------------HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHH--HHHHHHH
Confidence 4 4455555555 455665 88899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHhhhcccc-cccccccc------------ccccccccccchhhHHHHHHHHHHHHHHHHHhc-cccCCCC
Q 012666 184 LFMAVGNILGYATGSFSG-WFKILPFT------------LTSACNVDCANLKSAFFLDVIFIAITTCISASA-AHEVPLG 249 (458)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~ 249 (458)
....+|..+++.+++... ... +.. ..........+|++.|++.+++.++..++..+. .||++++
T Consensus 160 ~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 237 (438)
T 3o7q_A 160 TFNSFGAIIAVVFGQSLILSNV--PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD 237 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHTSS--CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 999999999999987743 111 000 000000000128999987776665555444332 3333221
Q ss_pred CCCCCCCCCccccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhceeccCCCccccccc
Q 012666 250 SHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW-MGREIYGGEPNEGQNYA 328 (458)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 328 (458)
++++ ++ + ++..++.++.+++ |.++..++..++..........+.+.| +. +.++.++.
T Consensus 238 ~~~~-------~~---~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~------ 295 (438)
T 3o7q_A 238 NHSD-------AK---Q---GSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVE-EIPGMTAG------ 295 (438)
T ss_dssp CCCC-------SS---T---TSHHHHHHHHTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSTTCCHH------
T ss_pred cccc-------cc---c---cchhhhHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCcchh------
Confidence 1110 00 0 1112344556666 788888888777777777777888888 53 33333322
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHH
Q 012666 329 TGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALII 408 (458)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (458)
..........++.+++.++.+++.||+|||+.+..+.++.+++.++..+.+ +.+ ..+.
T Consensus 296 ----~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~ 353 (438)
T 3o7q_A 296 ----FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-----------------GHV-GLIA 353 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC-----------------HHH-HHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC-----------------CcH-HHHH
Confidence 122334445777888999999999999999999888888877776665542 222 3444
Q ss_pred HHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 409 FTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
..+.|++.+...+..+++..|.+|+ + ++...++.+ ...++..++
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~g~~~~ 397 (438)
T 3o7q_A 354 LTLCSAFMSIQYPTIFSLGIKNLGQ--D-TKYGSSFIV-MTIIGGGIV 397 (438)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCGG--G-HHHHHHHHH-HTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc--c-ccchhhHHH-HHHHHHHHH
Confidence 5777888888888889998999987 4 666666555 444555443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=6.4e-31 Score=254.55 Aligned_cols=355 Identities=12% Similarity=0.083 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHH
Q 012666 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (458)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~ 113 (458)
.......+...+........+|.+.+++ .+..+.+++.+++.++..++.++.|+++| |+|||+.+++ +.+...+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~ 104 (451)
T 1pw4_A 31 LGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH----hcCchHHHHH-HHHHHHH
Confidence 3344444455555566677888888889 99999999999999999999999999999 9999998777 5555666
Q ss_pred HHHHHhh----ccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 114 AVLLIGL----SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 114 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
+.++..+ ++++ +.+++.+++.|++.+...+...+++.|++|+++|+ +++++......+|
T Consensus 105 ~~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g 167 (451)
T 1pw4_A 105 VMLFMGFVPWATSSI---------------AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVG 167 (451)
T ss_dssp HHHHHHHCHHHHSSS---------------SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccH---------------HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhh--HHHHHHHHHHHHH
Confidence 6666666 6666 77888899999999999999999999999999999 9999999999999
Q ss_pred HHHHHhhhccccccccccccccccccccccc-hhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccc---cccc
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCAN-LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG---HEQS 265 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~~ 265 (458)
..+++.+++...... + |++.|++.+++.++..++.++..||++++...+++++.+++ +.++
T Consensus 168 ~~~g~~~~~~l~~~~---------------g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (451)
T 1pw4_A 168 GGIPPLLFLLGMAWF---------------NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNE 232 (451)
T ss_dssp HTSHHHHHHHHHHHT---------------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------
T ss_pred HHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchh
Confidence 999999987632211 6 99999999988887777777788887665432211111110 0000
Q ss_pred cchHHHHHHH--HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHH
Q 012666 266 SDVHEAFLWE--LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (458)
Q Consensus 266 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+.+++...++ .++.+++ +.++..++..++.......+..+.+.|+.+ .++.++ ...........+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~----------~~~~~~~~~~~~ 299 (451)
T 1pw4_A 233 KAEQELTAKQIFMQYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFAL----------DKSSWAYFLYEY 299 (451)
T ss_dssp ------CCTHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCH----------HHHHHHHHHHHH
T ss_pred hhhcccccccchHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH----------HHHHHHHHHHHH
Confidence 0000111111 2334455 788888888888888888888888888743 233222 112233444677
Q ss_pred HHHHHHHHHHHHHHhh--cChhhHHHHHHHHH-HHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHh
Q 012666 344 VLGITSVLMEKLCRKW--GAGFIWGISNILMA-LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (458)
Q Consensus 344 ~~~~~~~~~g~l~dr~--g~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (458)
+.+++.++.+++.||+ |+|+.+..+..+.. ++++++.+. +. .+.+...+...+.|++.+...
T Consensus 300 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~g~~~~~~~ 364 (451)
T 1pw4_A 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN--------------PA-GNPTVDMICMIVIGFLIYGPV 364 (451)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC--------------CT-TCHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh--------------cc-cCHHHHHHHHHHHHHHHhchH
Confidence 7889999999999999 99998877766655 555444332 11 134556667777888888878
Q ss_pred hchhHhHHhhhcccccccchhhhHHHHHHHh-hhhhc
Q 012666 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVI-PQVSS 456 (458)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~i~ 456 (458)
+...+++.|.+|+ +.+|++.|+.+....+ +..++
T Consensus 365 ~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 365 MLIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp HHHHHHHHHTSCT--THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhch--hhhhhHHHHHHHHHHHHHHHHH
Confidence 8888999999998 8899999999999888 87765
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=2.6e-27 Score=231.73 Aligned_cols=370 Identities=12% Similarity=0.030 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----hCCCchhhHHHHhhhhhhhhhhccccceeccccCCc-CCCcchhH
Q 012666 32 KLLKVASVAGGIQFGWALQLSLLTPYVQ-E-----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFI 104 (458)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-----~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r-~Grr~~~~ 104 (458)
..+......+...+.++....+++.|++ + +|.+..+.+++.+++.++..+++++.|+++| | +|||+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~~g~r~~~~ 89 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD----RIIGARPAVF 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchHHHH
Confidence 4455555556666777777778888874 4 8999999999999999999999999999999 9 89999887
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHH
Q 012666 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184 (458)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (458)
. +.+...++.+...++++. +.+++.+++.|++.+...+...+++.|++|+++|+.+.+.++.+.
T Consensus 90 ~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 153 (491)
T 4aps_A 90 W-GGVLIMLGHIVLALPFGA---------------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVF 153 (491)
T ss_dssp H-HHHHHHHHHHHHHSCCST---------------THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHH
Confidence 7 455566666666677666 778889999999999999999999999999988432278888999
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccc
Q 012666 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (458)
Q Consensus 185 ~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (458)
..++|..+++.+++.+.... +|++.|++.++..++..++..+..|+..+++.++.+++.++++.+
T Consensus 154 ~~~~g~~~~~~~~~~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4aps_A 154 GINLGAFIAPLIVGAAQEAA---------------GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHS---------------CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence 99999999999987743322 899999998777666665554444443322211111110000000
Q ss_pred ccch-------------------------H-HH----------------HHHHHHH--HHhcchHHHHHHHHHHHHHHHH
Q 012666 265 SSDV-------------------------H-EA----------------FLWELFG--TFRYFSGTIWIILIVTALTWLG 300 (458)
Q Consensus 265 ~~~~-------------------------~-~~----------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 300 (458)
+..+ + .. ..++... ..++.....+.+.+..++.+..
T Consensus 219 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
T 4aps_A 219 PLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAI 298 (491)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00 0000000 0011001233333344444444
Q ss_pred HHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHH-----HHHHHHHHH
Q 012666 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG-----ISNILMALC 375 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-----~~~~~~~~~ 375 (458)
+.....+.+.|.. +.++.+.... + .......+..+++.++.+++.||+|||+... .+..+.+++
T Consensus 299 ~~~~~~~~~~~~~-~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 299 EEQGSVVLATFAA-ERVDSSWFPV-----S-----WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HGGGGTHHHHHHH-HSCCCSSSCS-----G-----GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHH-HHhccCccCH-----H-----HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 4444444555553 2233222111 1 1122345556677888999999999986554 677777777
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhh
Q 012666 376 FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVS 455 (458)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i 455 (458)
++++......... +...+.+...+...+.|++.+...+..++++.|..|+ +.+|++.|+.+....+|..+
T Consensus 368 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 368 FLLMAIPGALYGT--------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK--AFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HTTTHHHHHHCCC--------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT--TCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHH
Confidence 7666554321100 0111345566777888888888888889999999999 88999999999999888877
Q ss_pred cC
Q 012666 456 SC 457 (458)
Q Consensus 456 ~~ 457 (458)
++
T Consensus 438 ~~ 439 (491)
T 4aps_A 438 NA 439 (491)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=1.9e-27 Score=224.37 Aligned_cols=337 Identities=13% Similarity=0.051 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHH
Q 012666 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (458)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (458)
.++...+...+......+.+|.+.+++|.++.+.+++.++..++..+++++.|+++| |+||||.++. +.....++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~ 78 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD----RVGRRPVILV-GMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT----TSCCCCCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHH-HHHHHHHH
Confidence 344455556667777888899999999999999999999999999999999999999 9999999887 44445555
Q ss_pred HHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHH
Q 012666 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (458)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (458)
.....+.++. +.+++.+.+.|++.+...+...+++.|++|+++|+ ++++..+....+|..+++
T Consensus 79 ~~~~~~~~~~---------------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~ 141 (375)
T 2gfp_A 79 TLVAVTTSSL---------------TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR--HANSLLNMGILVSPLLAP 141 (375)
T ss_dssp HHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccH---------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHhhH
Confidence 5656566665 78889999999999999999999999999999999 999999999999999999
Q ss_pred hhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHH
Q 012666 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (458)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (458)
.+++...... +|++.|++.+++.++..+...+..||+++++++++ +.. +
T Consensus 142 ~~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~ 190 (375)
T 2gfp_A 142 LIGGLLDTMW---------------NWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT-----RLL-----------T 190 (375)
T ss_dssp HHHHHSSCHH---------------HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC-----CTT-----------T
T ss_pred HHHHHHHHhc---------------cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc-----cHH-----------H
Confidence 9988754322 89999998888777766656667777654432210 000 0
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 012666 275 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (458)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 354 (458)
+.++.+++ |+++...+..++.......+..+.+.|+.+. ++.+ ............++.+++.++.++
T Consensus 191 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~----------~~~~g~~~~~~~~~~~~~~~~~~~ 257 (375)
T 2gfp_A 191 SYKTLFGN--SGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-LGLS----------SMTVSILFILPIPAAFFGAWFAGR 257 (375)
T ss_dssp CSTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-HHHH----------HHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233445 6777777777777777777777888776432 1111 111122233356777788888899
Q ss_pred HHHhhcChhhHHHHHHH-HHHHHH--HHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhh
Q 012666 355 LCRKWGAGFIWGISNIL-MALCFL--AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (458)
Q Consensus 355 l~dr~g~r~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (458)
+.||++++ +..+... ...+.. ...... .+ +.+...+...+.|++.+...+...++..|..
T Consensus 258 l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 320 (375)
T 2gfp_A 258 PNKRFSTL--MWQSVICCLLAGLLMWIPDWFG---VM------------NVWTLLVPAALFFFGAGMLFPLATSGAMEPF 320 (375)
T ss_dssp TTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH---HH------------HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc---cc------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99998772 2223322 222222 122211 00 3455667777888999988899999999998
Q ss_pred cccccccchhhhHHHHHHHhhhhhcC
Q 012666 432 ESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 432 ~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
| +.+|++.|+.+....++..+++
T Consensus 321 p---~~~g~~~g~~~~~~~~g~~~~~ 343 (375)
T 2gfp_A 321 P---FLAGTAGALVGGLQNIGSGVLA 343 (375)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHCCS
T ss_pred C---cccchHHHHHHHHHHHHHHHHH
Confidence 7 4689999999999999988765
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=8.6e-26 Score=220.99 Aligned_cols=366 Identities=14% Similarity=0.090 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHHhCC--------CchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHh
Q 012666 48 ALQLSLLTPYVQELGI--------PHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (458)
Q Consensus 48 ~~~~~~l~~~~~~~g~--------s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (458)
......+|.+.++++. ++.+.|++.+.+.++..++++++|+++| |+|||+.+++...+ ..++.+..+
T Consensus 29 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laD----r~GRk~~l~~~~~l-~~i~~i~~a 103 (491)
T 4gc0_A 29 AVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN----RFGRRDSLKIAAVL-FFISGVGSA 103 (491)
T ss_dssp HGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHH-HHHHHHHHH
Confidence 3344455666555532 2346788999999999999999999999 99999998885554 444444443
Q ss_pred hccccccccCC---CCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Q 012666 120 LSADIGWLLGD---RGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (458)
Q Consensus 120 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (458)
+++........ .........+.++++|++.|++.+...+...+++.|+.|+++|+ +..+..+....+|.++++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg--~~~~~~~~~~~~g~~~~~~~ 181 (491)
T 4gc0_A 104 WPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRG--KLVSFNQFAIIFGQLLVYCV 181 (491)
T ss_dssp CTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhh--hhHHhhhhhhhhhhhhhhhc
Confidence 32211000000 00012344588999999999999999999999999999999999 99999999999999988887
Q ss_pred hccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccc----------c
Q 012666 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS----------S 266 (458)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----------~ 266 (458)
+.......... ......|+..+.+..+.. +..++..++.||+|+....+.+.++.++..++ .
T Consensus 182 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~ 253 (491)
T 4gc0_A 182 NYFIARSGDAS-------WLNTDGWRYMFASECIPA-LLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253 (491)
T ss_dssp HHHHHTTSCTT-------TTTTTHHHHHHHTTHHHH-HHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhccccccc-------cccchhhHHHhhhhhhhh-hhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence 65521110000 001125666555555443 44455567789988754333222211100000 0
Q ss_pred chHHHHHHHH-----HHHHhcchHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHH
Q 012666 267 DVHEAFLWEL-----FGTFRYFSGTIWIILIVTALTW-LGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML 340 (458)
Q Consensus 267 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
.+.+....+. .....+. ++.........+.+ .+...+..|.+.+.. .. +.+ ..........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~----------~~~~~~~~~~ 320 (491)
T 4gc0_A 254 QEIKHSLDHGRKTGGRLLMFGV-GVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TL-GAS----------TDIALLQTII 320 (491)
T ss_dssp HHHHHHHHHHHHHTTHHHHSCC-THHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HS-SCC----------HHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHhcc-cHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hc-CCC----------ccchhhHHHH
Confidence 0000000000 0111111 23333333333333 233444444444332 11 100 0111223334
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHH-
Q 012666 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT- 419 (458)
Q Consensus 341 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 419 (458)
.++..+++.++.+++.||+|||+.+..+....+++++.+..... ... ..+...+...++..+++..
T Consensus 321 ~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 321 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------------TQA-PGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH------------TTC-CHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh------------ccc-chHHHHHHHHHHHHHHHhHH
Confidence 56777888999999999999999999888888887776655431 111 1222223333333333332
Q ss_pred hhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
.++.+.+.+|.+|+ +.|+++.|+.+....++.+++
T Consensus 388 ~~~~~~~~~E~fPt--~~R~~~~g~~~~~~~~~~~i~ 422 (491)
T 4gc0_A 388 GPVCWVLLSEIFPN--AIRGKALAIAVAAQWLANYFV 422 (491)
T ss_dssp THHHHHHHHHSSCT--TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCH--hHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999 888999998888887777654
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=1.6e-24 Score=207.18 Aligned_cols=354 Identities=11% Similarity=0.068 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
.++.+......+...+.+....+++|.+++ ++|+++.+.|++.++..++..++++++|+++| |+||||++++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsD----r~Grr~~l~~~~~ 81 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD----KLGLRKYLLWIIT 81 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHT----TSTTCCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHHH
Confidence 344555555555555566677788999885 58999999999999999999999999999999 9999999887444
Q ss_pred HHHHH--HHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccc--ccchhhhhhHHHHH
Q 012666 109 ISIAV--AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK--DHRRTRVANAYFSL 184 (458)
Q Consensus 109 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~ 184 (458)
+..+. ......+.+... ......+.+.+++.+...+.......++.++ ++++ ...+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~ 145 (417)
T 2cfq_A 82 GMLVMFAPFFIFIFGPLLQ--------------YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN--FEFGRARM 145 (417)
T ss_dssp HTTSCHHHHHHHTHHHHHH--------------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT--CCHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc--cchHHHHH
Confidence 33221 111111111100 0011222222222333333333344444433 2344 56666666
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccc
Q 012666 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (458)
Q Consensus 185 ~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (458)
...+|..+++.+++.+.. .+|+..|++.++..++..+...+..||+++.. +++ +++++ ++
T Consensus 146 ~~~~g~~~~~~l~~~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~ 205 (417)
T 2cfq_A 146 FGCVGWALGASIVGIMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSA-TVA--NAVGA-NH 205 (417)
T ss_dssp STTTHHHHHHHHHHHHHH----------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSS-CSS--SSSSS-CC
T ss_pred HHHHHHHHHHHHHHHHHH----------------hchhHHHHHHHHHHHHHHHHHHHcCccccccc-ccc--ccccc-cc
Confidence 778888888888765321 16788887766554333333322333332211 110 00000 11
Q ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHH
Q 012666 265 SSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (458)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++. ..++.++.+++ |+++...+..+.....+..+..+.+.|+.+ .++.. .. +............+.
T Consensus 206 ~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~--~~~~~g~~~~~~~~~ 271 (417)
T 2cfq_A 206 SAF----SLKLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFTS-FFATG-----EQ--GTRVFGYVTTMGELL 271 (417)
T ss_dssp CCC----CHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSSH-----HH--HTHHHHHHHHHHHHH
T ss_pred ccc----cHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcc-----CC--ChhHHHHHHHHHHHH
Confidence 011 12234556666 777766555444443433333344555422 12100 00 111111223334566
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchh
Q 012666 345 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424 (458)
Q Consensus 345 ~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (458)
.+++.++.+++.||+|||+++..+.++.+++++++.+. + +.+.+++...+.+++.+...+..+
T Consensus 272 ~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 272 NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--------------T---SALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--------------C---SHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--------------c---cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999888877777765554432 1 234455555566666666666678
Q ss_pred HhHHhhhcccccccchhhhH-HHHHHHhhhhhc
Q 012666 425 ALVSIRTESLGLGQGLSLGV-LNLAIVIPQVSS 456 (458)
Q Consensus 425 ~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~i~ 456 (458)
.+.+|..|+ +.+|+..|+ ++....++..++
T Consensus 335 ~~~~~~~p~--~~~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 335 KYITSQFEV--RFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp HHHHHHSCH--HHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHCCH--HHHHHHHHHHHHHHHhHHHHHh
Confidence 899999999 888888887 476666665544
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=9.4e-23 Score=201.06 Aligned_cols=172 Identities=14% Similarity=0.198 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhC------CCchhhHHHHhhhhhhhhhhccccceeccccCCcC-CCcchhH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELG------IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-GRRRPFI 104 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g------~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~-Grr~~~~ 104 (458)
.+......+...+.++....+++.++ +++| .+..+.+++.+++.++..++.++.|+++| |+ |||+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~~g~r~~~~ 89 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD----RFFGKYNTIL 89 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT----TSSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcchHHHH
Confidence 33444455555666777777888876 6689 99999999999999999999999999999 99 9999887
Q ss_pred HHHHHHHHHHHHHHhhcc-ccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHH--
Q 012666 105 VCGAISIAVAVLLIGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-- 181 (458)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-- 181 (458)
+ +.+...++.++..+++ +. +.+++.+++.|++.+...+...+++.|++|+++|+ ++.+.
T Consensus 90 ~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~ 151 (524)
T 2xut_A 90 W-LSLIYCVGHAFLAIFEHSV---------------QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS--LAQKAFD 151 (524)
T ss_dssp H-HHHHHHHHHHHHHHTSSCH---------------HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT--HHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhcccH---------------HHHHHHHHHHHHhccccchhHHHHHHHHcCccchH--HHHHHHH
Confidence 7 4455555556565655 55 77888899999999999999999999999999997 66555
Q ss_pred -HHHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHh
Q 012666 182 -FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (458)
Q Consensus 182 -~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (458)
.....++|..+++.+++.+... .+|++.|++.+++.++..++..+
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~---------------~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 152 MFYFTINFGSFFASLSMPLLLKN---------------FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHTSTHHHHT---------------SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999987764322 28999999888776665554443
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.39 E-value=8.3e-13 Score=128.73 Aligned_cols=182 Identities=16% Similarity=0.072 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 012666 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (458)
.+.+....+.+.+.+..+.+.........+..+...++.++.+++.| |+|||+.++..... ..++.+.+......
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~Grr~~~~~~~~~-~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD----KFGRKPLQIIGALG-MAIGMFSLGTAFYT 365 (491)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCSHHHHHHHHHH-HHHHHHHHHHHHHT
T ss_pred hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH----hhcCcchhccchHH-HHHHHHHHHHHHhc
Confidence 35566667778888888888888777777888888999999999999 99999988774443 33333333222111
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhhh-cchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccc
Q 012666 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNM-TQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (458)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 203 (458)
.... ...++...+...+.+. ..+..+.+.+|.+|.+.|+ ++.++......+|+.+++.+...+
T Consensus 366 ---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~--~~~g~~~~~~~~~~~i~~~~~p~l--- 429 (491)
T 4gc0_A 366 ---------QAPG--IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--KALAIAVAAQWLANYFVSWTFPMM--- 429 (491)
T ss_dssp ---------TCCH--HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHH--HHHHHHHHHHHHHHHHHHTHHHHH---
T ss_pred ---------ccch--HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 1111 1222222222222222 3355678999999999999 999999999999998888764332
Q ss_pred ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 012666 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ 253 (458)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 253 (458)
..........++...|++.++++++..++.++++||++.+..+|
T Consensus 430 ------~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLee 473 (491)
T 4gc0_A 430 ------DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473 (491)
T ss_dssp ------CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHH
T ss_pred ------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHH
Confidence 11100000014556788888888888888899999998765443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.38 E-value=8.8e-13 Score=127.01 Aligned_cols=179 Identities=14% Similarity=0.066 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcC--CCcchhHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF--GRRRPFIVCG 107 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~--Grr~~~~~~~ 107 (458)
+.++......+...+.......++|.++++ +|.+..+.+++.+...++..++.++.|+++| |+ |||+.++...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----~~~~~~~~~~~~~~ 327 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFRGNRGATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCchhHHHHH
Confidence 445555555566666777778889999866 8999999999999999999999999999999 98 9988877755
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHH
Q 012666 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (458)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (458)
.+...++++.+.+.++ ...+...+...+.|++.+...+...+++.|.+|+++|+ ++.++.+....
T Consensus 328 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~ 392 (451)
T 1pw4_A 328 MTLVTIATIVYWMNPA-------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGY 392 (451)
T ss_dssp HHHHHHHHHHTTSCCT-------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh--hHHHHHHHHHH
Confidence 5544455555544321 11255556666778887777888889999999999999 99999999999
Q ss_pred H-HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhcc
Q 012666 188 V-GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAA 243 (458)
Q Consensus 188 ~-g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (458)
+ |..+++.+.+.+.... +++..|++.+++.++..++.++..
T Consensus 393 ~~g~~~~~~~~g~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 393 LGGSVAASAIVGYTVDFF---------------GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHSS---------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc---------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999877643322 788888888877776666555443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.27 E-value=1.9e-11 Score=116.48 Aligned_cols=168 Identities=8% Similarity=-0.002 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHH-hC---CCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhc
Q 012666 46 GWALQLSLLTPYVQE-LG---IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121 (458)
Q Consensus 46 ~~~~~~~~l~~~~~~-~g---~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~ 121 (458)
.+......+|.+.++ ++ .+....++..++..+...++.++.|+++| |+|||+.++. +.....+......+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~l~~-~~~~~~~~~~~~~~~ 309 (417)
T 2cfq_A 235 TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN----RIGGKNALLL-AGTIMSVRIIGSSFA 309 (417)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHH-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcHHHHHHH-HHHHHHHHHHHHHHh
Confidence 334444456766644 33 22445677777777888889999999999 9999988766 444444554444443
Q ss_pred cccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHH-HHHHHHHHHHHHHhhhccc
Q 012666 122 ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g~~ig~~~~~~~ 200 (458)
++. +.+++...+.+++.+...+....++.|.+|++.|+ ++.+. .+....+|..++|.+++.+
T Consensus 310 ~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 310 TSA---------------LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp CSH---------------HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH--HHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred ccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 332 44445555556666666666788999999999999 88887 4778889999999998764
Q ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012666 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS 250 (458)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 250 (458)
.... +++..|.+.+++.++..++.++..||+++.+
T Consensus 373 ~~~~---------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 373 YESI---------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHS---------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHhc---------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 3221 6777888888777777776666677654433
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.21 E-value=1.9e-11 Score=117.20 Aligned_cols=163 Identities=11% Similarity=0.056 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPY-VQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
.+......+...........++|.| .++ +|.+..+.+++.++..++..++.++.|+++| |+|||+.++... +.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~~~~~~-~~ 334 (438)
T 3o7q_A 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS----RFAPHKVLAAYA-LI 334 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHH-HH
Confidence 3344444444445566667888888 766 4999999999999999999999999999999 999998877744 44
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
..++.+...+.++. + ..+...+.+++.+...+...++..|.+|++ ++ .+.++.. ...+|.
T Consensus 335 ~~~~~~~~~~~~~~---------------~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~-~~~~g~ 394 (438)
T 3o7q_A 335 AMALCLISAFAGGH---------------V-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK--YGSSFIV-MTIIGG 394 (438)
T ss_dssp HHHHHHHHHHCCHH---------------H-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH--HHHHHHH-HTTHHH
T ss_pred HHHHHHHHHHcCCc---------------H-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc--chhhHHH-HHHHHH
Confidence 55555555454442 2 233446677888888888899999999966 77 6777666 566899
Q ss_pred HHHHhhhccccccccccccccccccccccc-hhhHHHHHHHHHHHH
Q 012666 191 ILGYATGSFSGWFKILPFTLTSACNVDCAN-LKSAFFLDVIFIAIT 235 (458)
Q Consensus 191 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 235 (458)
.+++.+.+.+.... + ++..|.+.+++.++.
T Consensus 395 ~~~~~~~g~l~~~~---------------g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 395 GIVTPVMGFVSDAA---------------GNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHHHHHHH---------------TSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---------------cchHHHHHHHHHHHHHH
Confidence 99998877643322 4 777777665544433
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.16 E-value=6.9e-11 Score=115.10 Aligned_cols=175 Identities=10% Similarity=0.049 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhH----HHHHHHHHHHHHHHh
Q 012666 45 FGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI----VCGAISIAVAVLLIG 119 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~----~~~~~~~~~~~~~~~ 119 (458)
..+.....+++.+.++ .+.+..+.+++.....+...++.++.|+++| |+|||+... ..+.....++...+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~r~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWT----AWKKNQPSSPTKFAVGLMFAGLSFLLMA 372 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHH----HTTTC---CHHHHHHHHHHHHHHHTTTH
T ss_pred HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHH----HHhccCCCchHHHHHHHHHHHHHHHHHH
Confidence 3344444566777754 6777677888888888889999999999999 999886543 124444444444333
Q ss_pred hccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
...... +.......+...+...+.+++.+...+...+++.|..|++.|+ ++.++.+....+|..+++.+.+.
T Consensus 373 ~~~~~~------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 373 IPGALY------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS--QMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp HHHHHC------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS--SSTHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhc------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 322100 0011112255666777788888888899999999999999999 99999999999999999998766
Q ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCC
Q 012666 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (458)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 247 (458)
... .++...|.+.+++.++..++.++..++.+
T Consensus 445 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 445 YNA----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp GGG----------------SSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred Hhc----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 15566777777777777776666666544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.81 E-value=7.4e-08 Score=90.01 Aligned_cols=101 Identities=10% Similarity=0.078 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHH
Q 012666 337 GLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL 416 (458)
Q Consensus 337 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 416 (458)
......+...++.++.|+++||+|||+.+..+..+.+++.++..+.+ +.+.+++...+.|++.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-----------------SLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHH
Confidence 34446777888999999999999999999999999999988888775 5677888888999999
Q ss_pred HHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 417 AITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
+...+...+++.|..|+ +++++.+++.+....+|..++
T Consensus 103 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~ 140 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYER--TQLRHANSLLNMGILVSPLLA 140 (375)
T ss_dssp HHHHHHHHHHHHHHHHT--SSCCSHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998 889999999999988887765
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.70 E-value=1.2e-07 Score=93.02 Aligned_cols=143 Identities=7% Similarity=-0.043 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhceecc------CCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012666 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYG------GEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358 (458)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 358 (458)
+.++.+.+..++..+++.....+.+.|+.++ ++ .++. ...+......++..++.++.|+++||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~s~~----------~~g~~~~~~~~~~~~~~~~~G~l~dr 80 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-LLLSIPEELRGA----------VAKDVFHSFVIGVYFFPLLGGWIADR 80 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCCSSSTTTT----------THHHHHHHHHHHHHHTHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777788777533 33 2221 12233444677778889999999999
Q ss_pred h-cChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccc
Q 012666 359 W-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (458)
Q Consensus 359 ~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
+ |||+++..+.++.+++.++..+. +. +.+.+++..++.|++.+...+...+++.|.+|+ ++
T Consensus 81 ~~g~r~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~ 142 (524)
T 2xut_A 81 FFGKYNTILWLSLIYCVGHAFLAIF--------------EH--SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SN 142 (524)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHT--------------SS--CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST--TT
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHh--------------cc--cHHHHHHHHHHHHHhccccchhHHHHHHHHcCc--cc
Confidence 9 99999999998888888777665 20 255667778888999998889999999999998 66
Q ss_pred cchhhhH---HHHHHHhhhhhc
Q 012666 438 QGLSLGV---LNLAIVIPQVSS 456 (458)
Q Consensus 438 ~g~~~g~---~~~~~~~~~~i~ 456 (458)
+|...++ .+....+|..++
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 6655444 777777766654
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=52.56 E-value=10 Score=18.13 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=11.1
Q ss_pred HHHHHHHhhcChhh
Q 012666 351 LMEKLCRKWGAGFI 364 (458)
Q Consensus 351 ~~g~l~dr~g~r~~ 364 (458)
+.|.+.+|+||+.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35889999999864
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=39.79 E-value=76 Score=20.84 Aligned_cols=34 Identities=3% Similarity=-0.043 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 012666 220 NLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ 253 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 253 (458)
+|..++.+...+.+++.-+.-..+||+.+..+.+
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP~P 64 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPAP 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCCCC
Confidence 4444455555455555555557788876655443
No 17
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=27.59 E-value=1.1e+02 Score=20.36 Aligned_cols=34 Identities=3% Similarity=-0.043 Sum_probs=20.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 012666 220 NLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ 253 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 253 (458)
+|..++.+...+.++..-+.-..+||+.+..+.+
T Consensus 32 G~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~aP~P 65 (82)
T 2nrg_A 32 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPAP 65 (82)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHSSTTTTTCCSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCCCC
Confidence 4555555555555555555557788876655443
Done!