BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012667
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 133/455 (29%), Positives = 216/455 (47%), Gaps = 43/455 (9%)
Query: 12 ESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTG 71
E ++P +K F+ ++E+ +K+A E K + L G+ + +KD I + TT
Sbjct: 34 EETDPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTC 91
Query: 72 GTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKI 131
+K L P ++ + +L A+L+GK NM E G S ++ NP+D +
Sbjct: 92 ASKMLEGFVPIY-ESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAV 150
Query: 132 TXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTV 191
L P++LG D GGS+R PAA CGVVG KPT+GR+ G++ ++
Sbjct: 151 PGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSL 210
Query: 192 GMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFN 251
+G L V+D +V AI+G + + + V F + I +K+A +
Sbjct: 211 DQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDF-TSEIGKDIKGLKVALPKEYLG 269
Query: 252 D-CSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY---- 306
+ +DD++ AV+ L + G V EV++PN + ++Y+ SE S++LS +
Sbjct: 270 EGVADDVKEAVQNAVETL-KSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIR 328
Query: 307 -------------LQKINCSDQGWDARVALSVY-GSFSSQE------YIKAQKIRNHQMQ 346
L K++ S +G+ V ++ G+F+ Y K+QK+R
Sbjct: 329 YGYHSKEAHSLEELYKMSRS-EGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKN 387
Query: 347 IHRNVFAKADVIVVPTTGVTAYEIK---DDALKTGELDYIYGAALVRYQIAGNFLGLPAV 403
VF DV+V PT TA+ + DD L +Y L+ + N GLP +
Sbjct: 388 DFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLT------MYANDLLTTPV--NLAGLPGI 439
Query: 404 TVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQ 438
+VP G + G PIGLQFIGKP+ E TL +A+ +
Sbjct: 440 SVPCG-QSNGRPIGLQFIGKPFDEKTLYRVAYQYE 473
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 194/412 (47%), Gaps = 39/412 (9%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELG 109
L G+ IAVKD I TT +K L V P DA + RL+ GA++VGKTN+ E
Sbjct: 64 LFGIPIAVKDNILVEGEKTTCASKILENFVAPY--DATVIERLKKAGALIVGKTNLDEFA 121
Query: 110 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 169
G+S + +NP+D ++ PV+LG D GGS+R PA+ CGV
Sbjct: 122 MGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGV 181
Query: 170 VGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKV 227
+G KPT+GR+ G++ ++ +G+ ED +V I+G S V +P+
Sbjct: 182 IGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEW 241
Query: 228 SFPLLKSATSISAIKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEV 286
S + K + +K+ +F + ++ + +L E+ G+++ EV++P+++
Sbjct: 242 SEEVKK---EVKGLKIGLPKEFFEYELQPQVKEAFENFIKEL-EKEGFEIKEVSLPHVKY 297
Query: 287 MRLAHYLTIGSECSTSLSSY----------------LQKINCSDQGWDARVALSVY-GSF 329
+Y+ SE S++L+ Y D+G+ V + G+F
Sbjct: 298 SIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTF 357
Query: 330 S------SQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYI 383
+ Y+KAQK+R F + DVI PTT ++ + E+
Sbjct: 358 ALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEM--- 414
Query: 384 YGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAF 435
Y + ++ + N GLPA+++P+ + GLP+G Q IGK W E TL+ I++
Sbjct: 415 YLSDIL--TVPANLAGLPAISIPIAWKD-GLPVGGQLIGKHWDETTLLQISY 463
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 198/411 (48%), Gaps = 38/411 (9%)
Query: 53 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGT 112
G+ +A+KD I TT ++ L DA V +++ G ++VGK N+ E G+
Sbjct: 60 GIPVAIKDNILTLGMRTTCASRILENYESVF-DATVVKKMKEAGFVVVGKANLDEFAMGS 118
Query: 113 SGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGF 172
S + RNP+D ++ + ALG D GGSVR PA+LCGVVG+
Sbjct: 119 STERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGY 178
Query: 173 KPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLL 232
KPT+G + G++ ++ +G + TV DA ++ I+G + TV+ KV F L
Sbjct: 179 KPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNR-KVDF-LS 236
Query: 233 KSATSISAIKLA-KYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAH 291
+ +S +K A + + +D + + A+ KL ER G KV V IP+I+ +
Sbjct: 237 EIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEAL-KLLERLGAKVERVKIPHIKYSVATY 295
Query: 292 YLTIGSECSTSLSSY-------------LQK--INCSDQGWDARV-------ALSVYGSF 329
Y+ +E S++L+ + L++ + + G+ V ++ ++
Sbjct: 296 YVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAY 355
Query: 330 SSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKD--DALKTGELDYIYGAA 387
+ KA K+R V ++ D I+ PT+ VTA++I + D L +D
Sbjct: 356 YEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDI----- 410
Query: 388 LVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQ 438
+ I N GLPA++VP G+ + LP+G+Q IG+ +++ + IA A++
Sbjct: 411 ---FTIPANLAGLPAISVPFGF-SNNLPVGVQVIGRRFADGKVFRIARAIE 457
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 192/413 (46%), Gaps = 42/413 (10%)
Query: 53 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGT 112
G+ +A+KD I TT ++ L DA V + + G ++VGK N+ E G+
Sbjct: 61 GIPVAIKDNILTLGXRTTCASRILENYESVF-DATVVKKXKEAGFVVVGKANLDEFAXGS 119
Query: 113 SGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGF 172
S + RNP+D ++ ALG D GGSVR PA+LCGVVG+
Sbjct: 120 STERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALGSDTGGSVRQPASLCGVVGY 179
Query: 173 KPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLL 232
KPT+G + G++ ++ +G + TV DA ++ I+G + TV+ KV F L
Sbjct: 180 KPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEIISGRDENDATTVNR-KVDF-LS 237
Query: 233 KSATSISAIKLA-KYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAH 291
+ +S K A + + +D + + A+ KL ER G KV V IP+I+ +
Sbjct: 238 EIEEGVSGXKFAVPEEIYEHDIEEGVSERFEEAL-KLLERLGAKVERVKIPHIKYSVATY 296
Query: 292 YLTIGSECSTSLSSY-----------------LQKINCSDQGWDARVALSVYGSFS---- 330
Y+ +E S++L+ + K G + R + + G+F+
Sbjct: 297 YVIAPAEASSNLARFDGVKYGLRIKEKGLREXYXKTRNVGFGEEVRRRIXI-GTFTLSAA 355
Query: 331 --SQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAY---EIKDDALKTGELDYIYG 385
+ KA K+R V ++ D I+ PT+ VTA+ EIKD L Y
Sbjct: 356 YYEAYFNKAXKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDP------LTYYLX 409
Query: 386 AALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQ 438
+ I N GLPA++VP G+ + LP+G+Q IG+ +++ + IA A++
Sbjct: 410 DI---FTIPANLAGLPAISVPFGF-SNNLPVGVQVIGRRFADGKVFRIARAIE 458
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/442 (28%), Positives = 203/442 (45%), Gaps = 50/442 (11%)
Query: 23 FINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPC 82
F++ NE +L++A + +P L G+++AVKD I TT G++ L P
Sbjct: 38 FLSLNER-LLEEA-------EAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPP 89
Query: 83 TGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXX 142
+A V RL+ GA+++GKTN+ E G G+S + + +NP+DP ++
Sbjct: 90 Y-EATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAA 148
Query: 143 XXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVE 202
L P+ALG D GGSVR PAA CGV G KPT+GR+ G++ ++ +G +A +V
Sbjct: 149 LAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVR 208
Query: 203 DALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATS--ISAIKLAKYDAWFNDCSDDIRVC 260
D ++ A GP P ++ LP P + A + ++L S +
Sbjct: 209 DLALLMDAAAGPDPLDATSLDLP----PRFQEALEGPLPPLRLGVVREALAGNSPGVERA 264
Query: 261 CSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYL----------QKI 310
A+ K+ G V EV+ P++ A+Y+ +E S++L+ Y +++
Sbjct: 265 LEEAL-KVFRELGLSVREVSWPSLPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEV 323
Query: 311 NCSDQGWDARVALSV-----YGSFSSQE------YIKAQKIRNHQMQIHRNVFAKADVIV 359
+ A L V G+F Y +AQ R + +F + D+++
Sbjct: 324 EGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLL 383
Query: 360 VPTTGVTAYEI--KDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIG 417
+PTT A+ + D L D Y + N GLPA++ P G++ LP+G
Sbjct: 384 LPTTPHPAFPFGARRDPLAMYREDL--------YTVGANLTGLPALSFPAGFE-GHLPVG 434
Query: 418 LQFIGKPWSE-PTLMHIAFAMQ 438
LQ + PW E L+ A A +
Sbjct: 435 LQLLA-PWGEDERLLRAALAFE 455
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 131/483 (27%), Positives = 200/483 (41%), Gaps = 69/483 (14%)
Query: 9 AVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYP 68
A + + P ++ +N D LK+A E + G L G+ + +KD I+ +P
Sbjct: 39 AALDRTGPRLRAVIELN---PDALKEAAERDRERRDGRLRGPLHGIPLLLKDNINAAPMA 95
Query: 69 TTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA-----GTSGINPHYGVAR 123
T+ G+ L RP DA V RLR GA+++GKTN+ E SG + G R
Sbjct: 96 TSAGSLALQGFRP--DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTR 153
Query: 124 NPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSG 183
NPY S L VA+G + GS+ PAA+ GVVG KPT G + G
Sbjct: 154 NPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDG 213
Query: 184 VLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF--------PLLKSA 235
++P++++ G +A +V DA V AI G + T ++P + P
Sbjct: 214 IIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDYTARLDPQGLRG 273
Query: 236 TSISAIK--LAKYDAW---FNDCSDDIRVCCSRAVD-KLCERYGWKVVEVTIPNIEVMR- 288
I ++ L KY + ++R + V +L + W E T+ E
Sbjct: 274 KRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAG 333
Query: 289 LAHYLTIGSECSTSLSSYL------QKINCSDQGWDARVALSVYGSFSSQEYIKAQK--- 339
L Y SL+ + K G + V + YI+A+
Sbjct: 334 LERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDAR 393
Query: 340 -----------IRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAAL 388
+ HQ+ D +V PTTGV A+ I+ E D G +
Sbjct: 394 RLAGPEGIDAALAAHQL----------DALVAPTTGV-AWPIRS------EGDDFPGESY 436
Query: 389 VRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKP 448
+A G P++TVP+G GLP+GL F+G WSEP L+ +A+A + + R+P
Sbjct: 437 SAAAVA----GYPSLTVPMG-QIDGLPVGLLFMGTAWSEPKLIEMAYAYEQR--TRARRP 489
Query: 449 KVF 451
F
Sbjct: 490 PHF 492
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 175/406 (43%), Gaps = 42/406 (10%)
Query: 27 NEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDA 86
+EE K+A T ++G+ L G+ + VKD PT GTK + P +A
Sbjct: 41 DEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTRAGTKA--PLPPLPEEA 98
Query: 87 CCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXX 146
V RLR GA+L KTN HE+ G +G NP G RN DPS+
Sbjct: 99 RAVRRLREAGALLFAKTNXHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALG 158
Query: 147 LCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALV 206
+ +LG D GGS+R+PA GVVGFKP++GR+ L G LPL+ + G L +V DA
Sbjct: 159 IGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHF 218
Query: 207 VYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVD 266
+ + G S PL + + L D ++R +R ++
Sbjct: 219 LTEILAGE-------------SIPLEGVQNPVFGVPL---DFLEGRLGVEVRKAFTRLLE 262
Query: 267 KLCERYGWKVVEVTIPNIEV----MRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARV- 321
L +V EV++P V RL Y + + + + +G+ +V
Sbjct: 263 DLPALRA-EVREVSLPLEGVYEVYTRLVRY--------EAARIHEKALKEHPEGFSPQVR 313
Query: 322 -ALSVYGSFSSQEYIKA----QKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALK 376
AL + + ++Y A + +R ++ R V D +++P + A + + ++
Sbjct: 314 EALLAGLALTEKDYRDAVAEREALRLELVKALRGV----DALLLPVQPLPAPPLGTEEVE 369
Query: 377 TGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIG 422
+ A + + + LG+P + +P G P+GLQ +G
Sbjct: 370 LESGRKGHREAFITLTLPFSLLGVPTLALPFA-KVEGXPVGLQVVG 414
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 171/427 (40%), Gaps = 49/427 (11%)
Query: 50 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 109
VL G +A+KD + + P G++ + P DA V RL GA + GK +L
Sbjct: 87 VLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSR-DATVVTRLLAAGATVAGKAVCEDLC 145
Query: 110 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 169
S P G RNP+D + A+G D GGS+R+PAA CGV
Sbjct: 146 FSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGV 205
Query: 170 VGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDA---LVVYAAINGPLPSQQPTVSLPK 226
VG KPTFG +P +G P+ T+ +G + TV DA L V A +G P Q +V
Sbjct: 206 VGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGD 265
Query: 227 VSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCS-RAVDKLCERYGWKVVEVTIPNIE 285
L + + +++ F V + RA G V EV IP
Sbjct: 266 Y---LSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNIP--- 319
Query: 286 VMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDAR------------------------- 320
H I + +T +Y Q ++ + G +A
Sbjct: 320 --WHLHAFHIWNVIATDGGAY-QMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSET 376
Query: 321 ---VALSVYGSFSS---QEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDA 374
VAL+ + ++ Y KA+ + + + DV+V+PT A E+ A
Sbjct: 377 VKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELP--A 434
Query: 375 LKTGELDYIYGA-ALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHI 433
+I A ++ + G P+++VP G GLP+G+ G+ + + T++ +
Sbjct: 435 KDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMMITGRHFDDATVLRV 493
Query: 434 AFAMQAL 440
A + L
Sbjct: 494 GRAFEKL 500
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 108/427 (25%), Positives = 171/427 (40%), Gaps = 49/427 (11%)
Query: 50 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 109
VL G +A+KD + + P G++ + P DA V RL GA + GK +L
Sbjct: 87 VLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSR-DATVVTRLLAAGATVAGKAVCEDLC 145
Query: 110 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 169
S P G RNP+D + A+G D GG++R+PAA CGV
Sbjct: 146 FSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAAFCGV 205
Query: 170 VGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDA---LVVYAAINGPLPSQQPTVSLPK 226
VG KPTFG +P +G P+ T+ +G + TV DA L V A +G P Q +V
Sbjct: 206 VGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGD 265
Query: 227 VSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCS-RAVDKLCERYGWKVVEVTIPNIE 285
L + + +++ F V + RA G V EV IP
Sbjct: 266 Y---LSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNIP--- 319
Query: 286 VMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDAR------------------------- 320
H I + +T +Y Q ++ + G +A
Sbjct: 320 --WHLHAFHIWNVIATDGGAY-QMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSET 376
Query: 321 ---VALSVYGSFSS---QEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDA 374
VAL+ + ++ Y KA+ + + + DV+V+PT A E+ A
Sbjct: 377 VKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELP--A 434
Query: 375 LKTGELDYIYGA-ALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHI 433
+I A ++ + G P+++VP G GLP+G+ G+ + + T++ +
Sbjct: 435 KDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMMITGRHFDDATVLRV 493
Query: 434 AFAMQAL 440
A + L
Sbjct: 494 GRAFEKL 500
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 101/416 (24%), Positives = 164/416 (39%), Gaps = 78/416 (18%)
Query: 85 DACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXX 144
DA V R+R G +L+GKTN E+G + +G RNP++ +
Sbjct: 100 DAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVA 159
Query: 145 XXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRI-PLSGVLPLNWTVGMV--GILAATV 201
L PVA G D GSVR+PA++CGVVG KPT GRI P V + G G+ A +V
Sbjct: 160 AALSPVAHGNDAAGSVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSV 219
Query: 202 EDALVVYAAINGPLPSQQ---PTVSLPKVS---------------------FPLLKSATS 237
D + ++G P PT S P F L +
Sbjct: 220 RDIAALLDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAA 279
Query: 238 ISAIKLAKYDAWFNDCSD-------------DIRVCCSRAVDKLCERYGWKV------VE 278
+ A A +D +D D C A+ + ER G + +
Sbjct: 280 AARGAAAALAALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDD 339
Query: 279 VTIPNIEVMRLAHYLT--IGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIK 336
V + E+++ A +T + C L Y K+ ++ W+A L + + + Q
Sbjct: 340 VEWTSWEMVKRADQVTGRAFAACVDELRYYAGKV---ERWWEAGWDLLILPTVTRQ---- 392
Query: 337 AQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGN 396
+I + AK T E + A +G L ++ + + N
Sbjct: 393 -------TPEIGELMLAKG----------TDLEGRQSAFISGSLQ------MLAFTVPFN 429
Query: 397 FLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFH 452
G PA+++P+G + G+PIG+Q + E L+ +A ++ R+P++ +
Sbjct: 430 VSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQLLN 485
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 169/416 (40%), Gaps = 34/416 (8%)
Query: 28 EEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDAC 87
E++L +A G+P L GV AVKD ID + P + DA
Sbjct: 75 REEVLAEARALDASPATGKP---LYGVPFAVKDNIDVAGLPCSAACPAF--TYEPDRDAT 129
Query: 88 CVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXL 147
V RLR GAI++GKTN+ + G G +G R +D I+ L
Sbjct: 130 VVARLRAAGAIVLGKTNLDQFATGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGL 189
Query: 148 CPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVV 207
+LG D GS R+PAA +VG KPT G + SGV+P ++ V + AA+V + ++
Sbjct: 190 VAFSLGTDTAGSGRVPAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFAASVAEGTLI 249
Query: 208 YAAING-------PLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVC 260
G PSQ+ LP V + + + + + N
Sbjct: 250 RRIAEGYDAADPYSRPSQK--RRLPHVGL-------RVGVPRQDQREFYGNTA---YAAL 297
Query: 261 CSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWD-- 318
RA+D++ ++VE+ A L G + L + ++ + +D
Sbjct: 298 YQRALDEMIS-LDAELVEIDFAPFR--DAAKLLYGGPWVAERLEAVGDHLSRAPDSFDPV 354
Query: 319 ARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTG 378
R + + S+ + + Q Q +A+ D++++P T T ++++
Sbjct: 355 VRSIVETAKTLSAVDAFRGQYELAALTQQANAQWARMDILLLP-TAPTIHKVEAVMADPV 413
Query: 379 ELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIA 434
L+ G Y N L A+ VP G+ GLP G+ +G +S+ ++ IA
Sbjct: 414 RLNSQLG----HYTNFVNLLDCAAIAVPAGFIETGLPFGVTLVGPAFSDDSMALIA 465
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/416 (24%), Positives = 164/416 (39%), Gaps = 78/416 (18%)
Query: 85 DACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXX 144
DA V R+R G +L+GKTN E+G + +G RNP++ +
Sbjct: 100 DAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVA 159
Query: 145 XXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRI-PLSGVLPLNWTVGMV--GILAATV 201
L PVA G D G+VR+PA++CGVVG KPT GRI P V + G G+ A +V
Sbjct: 160 AALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSV 219
Query: 202 EDALVVYAAINGPLPSQQ---PTVSLPKVS---------------------FPLLKSATS 237
D + ++G P PT S P F L +
Sbjct: 220 RDIAALLDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAA 279
Query: 238 ISAIKLAKYDAWFNDCSD-------------DIRVCCSRAVDKLCERYGWKV------VE 278
+ A A +D +D D C A+ + ER G + +
Sbjct: 280 AARGAAAALAALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDD 339
Query: 279 VTIPNIEVMRLAHYLT--IGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIK 336
V + E+++ A +T + C L Y K+ ++ W+A L + + + Q
Sbjct: 340 VEWTSWEMVKRADQVTGRAFAACVDELRYYAGKV---ERWWEAGWDLLILPTVTRQ---- 392
Query: 337 AQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGN 396
+I + AK T E + A +G L ++ + + N
Sbjct: 393 -------TPEIGELMLAKG----------TDLEGRQSAFISGSLQ------MLAFTVPFN 429
Query: 397 FLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFH 452
G PA+++P+G + G+PIG+Q + E L+ +A ++ R+P++ +
Sbjct: 430 VSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQLLN 485
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 152/383 (39%), Gaps = 54/383 (14%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA 110
L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT +
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKTTTTAFAS 112
Query: 111 G--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCG 168
T+ +NPH + + P+ALG GGSV PAA CG
Sbjct: 113 RDPTATLNPH--------NTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIQPAAYCG 164
Query: 169 VVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPLPSQQPTV 222
KP+F +P GV +W + VG+ A ED A+ + +G +P++ P +
Sbjct: 165 TAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRI 224
Query: 223 SLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIP 282
+ + F A++ A +A K ER G V + +P
Sbjct: 225 GVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGASVQAIDLP 263
Query: 283 NI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKI 340
E R+ H + E +L+ + + + R +L + +EY +A++I
Sbjct: 264 EAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKEYDEARRI 321
Query: 341 RNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGL 400
+ VF DV++ + A T + RY +G
Sbjct: 322 GRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNRLWTLMGN 370
Query: 401 PAVTVPVGYDTAGLPIGLQFIGK 423
P V VPV GLPIG+Q I +
Sbjct: 371 PCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 156/384 (40%), Gaps = 56/384 (14%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA 110
L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT +
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKTTTTAFAS 112
Query: 111 G--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCG 168
T+ +NPH + + P+ALG GGSV PAA CG
Sbjct: 113 RDPTATLNPH--------NTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCG 164
Query: 169 VVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPLPSQQPTV 222
KP+F +P GV +W + VG+ A ED A+ + +G +P++ P +
Sbjct: 165 TAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRI 224
Query: 223 SLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIP 282
+ + F A++ A +A K ER G V + +P
Sbjct: 225 GVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGASVQAIDLP 263
Query: 283 NI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKI 340
E R+ H + E +L+ + + + R +L + +EY +A++I
Sbjct: 264 EAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKEYDEARRI 321
Query: 341 RNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDAL-KTGELDYIYGAALVRYQIAGNFLG 399
+ VF DV++ + TA AL TG+ RY +G
Sbjct: 322 GRRGRRELGEVFEGVDVLLTYSAPGTA---PAKALASTGD---------PRYNRLWTLMG 369
Query: 400 LPAVTVPVGYDTAGLPIGLQFIGK 423
P V VPV GLPIG+Q I +
Sbjct: 370 NPCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 152/383 (39%), Gaps = 54/383 (14%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA 110
L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT +
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKTTTTAFAS 112
Query: 111 G--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCG 168
T+ +NPH + + P+ALG GGSV PAA CG
Sbjct: 113 RDPTATLNPH--------NTGHSPGGSSSGSAAAVGAGMIPLALGAQTGGSVIRPAAYCG 164
Query: 169 VVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPLPSQQPTV 222
KP+F +P GV +W + VG+ A ED A+ + +G +P++ P +
Sbjct: 165 TAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRI 224
Query: 223 SLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIP 282
+ + F A++ A +A K ER G V + +P
Sbjct: 225 GVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGASVQAIDLP 263
Query: 283 NI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKI 340
E R+ H + E +L+ + + + R +L + +EY +A++I
Sbjct: 264 EAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKEYDEARRI 321
Query: 341 RNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGL 400
+ VF DV++ + A T + RY +G
Sbjct: 322 GRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNRLWTLMGN 370
Query: 401 PAVTVPVGYDTAGLPIGLQFIGK 423
P V VPV GLPIG+Q I +
Sbjct: 371 PCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 152/383 (39%), Gaps = 54/383 (14%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA 110
L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT +
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKTTTTAFAS 112
Query: 111 G--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCG 168
T+ +NPH + + P+ALG GGSV PAA CG
Sbjct: 113 RDPTATLNPH--------NTGHSPGASSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCG 164
Query: 169 VVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPLPSQQPTV 222
KP+F +P GV +W + VG+ A ED A+ + +G +P++ P +
Sbjct: 165 TAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRI 224
Query: 223 SLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIP 282
+ + F A++ A +A K ER G V + +P
Sbjct: 225 GVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGASVQAIDLP 263
Query: 283 NI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKI 340
E R+ H + E +L+ + + + R +L + +EY +A++I
Sbjct: 264 EAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKEYDEARRI 321
Query: 341 RNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGL 400
+ VF DV++ + A T + RY +G
Sbjct: 322 GRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNRLWTLMGN 370
Query: 401 PAVTVPVGYDTAGLPIGLQFIGK 423
P V VPV GLPIG+Q I +
Sbjct: 371 PCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 154/383 (40%), Gaps = 54/383 (14%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA 110
L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT +
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKTTTTAFAS 112
Query: 111 G--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCG 168
T+ +NPH + P + + P+ALG GGSV PAA CG
Sbjct: 113 RDPTATLNPH----NTGHSPGGSSAGSAAAVGAG----MIPLALGTQTGGSVIRPAAYCG 164
Query: 169 VVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPLPSQQPTV 222
KP+F +P GV +W + VG+ A ED A+ + +G +P++ P +
Sbjct: 165 TAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRI 224
Query: 223 SLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIP 282
+ + F A++ A +A K ER G V + +P
Sbjct: 225 GVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGASVQAIDLP 263
Query: 283 NI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKI 340
E R+ H + E +L+ + + + R +L + +EY +A++I
Sbjct: 264 EAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKEYDEARRI 321
Query: 341 RNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGL 400
+ VF DV++ + A T + RY +G
Sbjct: 322 GRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNRLWTLMGN 370
Query: 401 PAVTVPVGYDTAGLPIGLQFIGK 423
P V VPV GLPIG+Q I +
Sbjct: 371 PCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 154/383 (40%), Gaps = 54/383 (14%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA 110
L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT +
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKTTTTAFAS 112
Query: 111 G--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCG 168
T+ +NPH + P + + P+ALG GGSV PAA CG
Sbjct: 113 RDPTATLNPH----NTGHSPGGASSGSAAAVGAG----MIPLALGTQTGGSVIRPAAYCG 164
Query: 169 VVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPLPSQQPTV 222
KP+F +P GV +W + VG+ A ED A+ + +G +P++ P +
Sbjct: 165 TAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRI 224
Query: 223 SLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIP 282
+ + F A++ A +A K ER G V + +P
Sbjct: 225 GVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGASVQAIDLP 263
Query: 283 NI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKI 340
E R+ H + E +L+ + + + R +L + +EY +A++I
Sbjct: 264 EAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKEYDEARRI 321
Query: 341 RNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGL 400
+ VF DV++ + A T + RY +G
Sbjct: 322 GRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNRLWTLMGN 370
Query: 401 PAVTVPVGYDTAGLPIGLQFIGK 423
P V VPV GLPIG+Q I +
Sbjct: 371 PCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 151/383 (39%), Gaps = 54/383 (14%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA 110
L G+ + +KD ID + PT G++ +P + DA VM L+ GA ++GKT +
Sbjct: 54 LRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKTTTTAFAS 112
Query: 111 G--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCG 168
T+ +NPH + + P+ALG GG V PAA CG
Sbjct: 113 RDPTATLNPH--------NTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGXVIRPAAYCG 164
Query: 169 VVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPLPSQQPTV 222
KP+F +P GV +W + VG+ A ED A+ + +G +P++ P +
Sbjct: 165 TAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRI 224
Query: 223 SLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIP 282
+ + F A++ A +A K ER G V + +P
Sbjct: 225 GVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGASVQAIDLP 263
Query: 283 NI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKI 340
E R+ H + E +L+ + + + R +L + +EY +A++I
Sbjct: 264 EAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKEYDEARRI 321
Query: 341 RNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGL 400
+ VF DV++ + A T + RY +G
Sbjct: 322 GRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNRLWTLMGN 370
Query: 401 PAVTVPVGYDTAGLPIGLQFIGK 423
P V VPV GLPIG+Q I +
Sbjct: 371 PCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 151/383 (39%), Gaps = 54/383 (14%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA 110
L G+ + + D ID + PT G++ +P + DA VM L+ GA ++GKT +
Sbjct: 54 LRGIAVGIADIIDTANMPTEMGSEIYRGWQPRS-DAPVVMMLKRAGATIIGKTTTTAFAS 112
Query: 111 G--TSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCG 168
T+ +NPH + + P+ALG GGSV PAA CG
Sbjct: 113 RDPTATLNPH--------NTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCG 164
Query: 169 VVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED------ALVVYAAINGPLPSQQPTV 222
KP+F +P GV +W + VG+ A ED A+ + +G +P++ P +
Sbjct: 165 TAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRI 224
Query: 223 SLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIP 282
+ + F A++ A +A K ER G V + +P
Sbjct: 225 GVVRQEF--------AGAVEPAAEQGL-------------QAAIKAAERAGASVQAIDLP 263
Query: 283 NI--EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKI 340
E R+ H + E +L+ + + + R +L + +EY +A++I
Sbjct: 264 EAVHEAWRI-HPIIQDFEAHRALAWEFSE-HHDEIAPMLRASLDATVGLTPKEYDEARRI 321
Query: 341 RNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGL 400
+ VF DV++ + A T + RY +G
Sbjct: 322 GRRGRRELGEVFEGVDVLLTYS-----------APGTAPAKALASTGDPRYNRLWTLMGN 370
Query: 401 PAVTVPVGYDTAGLPIGLQFIGK 423
P V VPV GLPIG+Q I +
Sbjct: 371 PCVNVPV-LKVGGLPIGVQVIAR 392
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 50 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 109
+L GV +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 97 LLYGVPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 155
Query: 110 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 169
NP +G NP+ SK P+ LG D GGS+R P+A CG+
Sbjct: 156 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 215
Query: 170 VGFKPTFGRIPLSGV 184
G KPT R+ SG+
Sbjct: 216 CGLKPTGNRLSKSGL 230
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 50 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 109
+L GV +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 104 LLYGVPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 162
Query: 110 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 169
NP +G NP+ SK P+ LG D GGS+R P+A CG+
Sbjct: 163 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 222
Query: 170 VGFKPTFGRIPLSGV 184
G KPT R+ SG+
Sbjct: 223 CGLKPTGNRLSKSGL 237
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 50 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 109
+L GV +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 103 LLYGVPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 161
Query: 110 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 169
NP +G NP+ SK P+ LG D GGS+R P+A CG+
Sbjct: 162 FSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 221
Query: 170 VGFKPTFGRIPLSGV 184
G KPT R+ SG+
Sbjct: 222 CGLKPTGNRLSKSGL 236
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 50 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 109
+L GV +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 127 LLYGVPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 185
Query: 110 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 169
NP +G NP+ SK P+ LG D GGS+R P+A CG+
Sbjct: 186 FSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 245
Query: 170 VGFKPTFGRIPLSGV 184
G KPT R+ SG+
Sbjct: 246 CGLKPTGNRLSKSGL 260
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 50 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 109
+L GV +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 123 LLYGVPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 181
Query: 110 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 169
NP +G NP+ SK P+ LG D GGS+R P+A CG+
Sbjct: 182 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 241
Query: 170 VGFKPTFGRIPLSGV 184
G KPT R+ SG+
Sbjct: 242 CGLKPTGNRLSKSGL 256
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 50 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 109
+L GV +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 141 LLYGVPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 199
Query: 110 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 169
NP +G NP+ SK P+ LG D GGS+R P+A CG+
Sbjct: 200 FSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 259
Query: 170 VGFKPTFGRIPLSGV 184
G KPT R+ SG+
Sbjct: 260 CGLKPTGNRLSKSGL 274
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 50 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 109
+L GV +++K+ + +T G L++ P D V L+L GA+ TN+ +
Sbjct: 141 LLYGVPVSLKECFSYKGHDSTLGLS-LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 199
Query: 110 AGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGV 169
NP +G NP+ SK P+ LG D GGS+R P+A CG+
Sbjct: 200 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 259
Query: 170 VGFKPTFGRIPLSGV 184
G KPT R+ SG+
Sbjct: 260 CGLKPTGNRLSKSGL 274
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 374 ALKTGELD-YIYGAALVRYQIAGNFLGLPAVTVPVGY--DTAGLPIGLQFIGKPW 425
+LKTG+LD +IY AA++ Y+ AG G VT+ GY T G I LQ G PW
Sbjct: 201 SLKTGKLDAFIYDAAVLNYK-AGRDEGCKLVTIGSGYIFATTGYGIALQ-KGSPW 253
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 270 ERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKIN 311
E++GW +VE + NI L L + +TSL+ +L + N
Sbjct: 177 EQWGWNIVEFYLGNISEQTLXERLKADATDNTSLAEHLSETN 218
>pdb|1FIU|A Chain A, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|1FIU|B Chain B, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|1FIU|C Chain C, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|1FIU|D Chain D, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|4ABT|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Ngomiv With Cognate Uncleaved Dna
pdb|4ABT|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Ngomiv With Cognate Uncleaved Dna
Length = 286
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 336 KAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAAL 388
+AQ R+ + + RN + IVV T T I AL TGE+D +Y AL
Sbjct: 194 RAQNARSEGLNLVRNRKGRLPHIVVVTAEPTPSRISSIALGTGEIDCVYHFAL 246
>pdb|4GGB|A Chain A, Crystal Structure Of A Proposed Galactarolactone
Cycloisomerase From Agrobacterium Tumefaciens, Target
Efi-500704, With Bound Ca, Disordered Loops
pdb|4HPN|A Chain A, Crystal Structure Of A Proposed Galactarolactone
Cycloisomerase From Agrobacterium Tumefaciens, Target
Efi-500704, With Bound Ca, Ordered Loops
Length = 378
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 21/70 (30%)
Query: 5 RFIAAVRESSNPPMKM---------------------SFFINYNEEDILKQATESTLRYK 43
R IAAVRE+ P M++ F I++ EE ++ + ++ R +
Sbjct: 176 RVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGIDWFEEPVVPEQLDAYARVR 235
Query: 44 KGEPISVLDG 53
G+PI V G
Sbjct: 236 AGQPIPVAGG 245
>pdb|3IZ6|O Chain O, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 151
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 186 PLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAK 245
P +W V AA VE+ +++ AA G +PSQ V + PL+KS T +++ K
Sbjct: 22 PPSW----VKTAAADVEE-MIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILK 76
Query: 246 YDAWFNDCSDDIRVCCSRAV 265
+ +D+ +AV
Sbjct: 77 AHGLAPEIPEDLYFLIKKAV 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,492,873
Number of Sequences: 62578
Number of extensions: 559855
Number of successful extensions: 1216
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 47
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)