Query 012667
Match_columns 458
No_of_seqs 172 out of 1215
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 13:54:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 7E-106 2E-110 816.8 40.2 436 1-449 24-484 (485)
2 2dc0_A Probable amidase; struc 100.0 6E-105 2E-109 798.6 36.6 414 1-441 19-433 (434)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 2E-103 5E-108 795.9 36.2 431 1-449 23-477 (478)
4 3a2q_A 6-aminohexanoate-cyclic 100.0 5E-102 2E-106 790.9 39.4 435 1-450 26-483 (493)
5 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 8E-103 3E-107 788.4 31.2 426 1-449 19-467 (471)
6 1m22_A Peptide amidase, PAM; e 100.0 1E-101 4E-106 789.7 37.8 430 1-448 29-490 (503)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 7E-100 3E-104 771.7 31.4 419 1-446 25-466 (476)
8 1o9p_A Malonamidase E2; malona 100.0 1.1E-97 4E-102 740.8 34.0 390 1-442 20-411 (414)
9 3a1k_A Amidase; AS family enzy 100.0 3.8E-98 1E-102 763.3 23.6 434 1-444 32-505 (521)
10 3ppm_A Fatty-acid amide hydrol 100.0 1.3E-94 4.4E-99 739.5 30.7 419 1-448 89-572 (573)
11 3u85_B Histone-lysine N-methyl 22.8 21 0.0007 18.0 0.2 8 131-138 8-15 (21)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=7.3e-106 Score=816.82 Aligned_cols=436 Identities=31% Similarity=0.455 Sum_probs=378.2
Q ss_pred CHHHHHHHHHHhhCCCCCCceEEEecCHHHHHHHHHHHHHHH-HcCCCCCCCcCcEEEEeeccCCCCccCCCCccccccC
Q 012667 1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRY-KKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKV 79 (458)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~na~~~~~~~~a~~~A~~~d~~~-~~g~~~~~L~Gipi~vKD~~~v~g~~tt~Gs~~~~~~ 79 (458)
||+++|++||+++| +.+|||+++++|+|+++|+++|+++ ++|++ ||||||||+|||||+|+|++||+||..+.++
T Consensus 24 el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~ 99 (485)
T 3ip4_A 24 DVVKDIYDAIEETD---PTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKDNIITNGLETTCASKMLEGF 99 (485)
T ss_dssp HHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEETTBCBTTBCCCTTSGGGTTC
T ss_pred HHHHHHHHHHHHhC---CCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEcCcccCCCccCCCChhhcCC
Confidence 68999999999998 8999999999999999999999999 89998 9999999999999999999999999988765
Q ss_pred CCCCCCHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccceeeccCCCc
Q 012667 80 RPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS 159 (458)
Q Consensus 80 ~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~a~gtD~gGS 159 (458)
. +++|+++|++||++|||++||||||||+++.+|.|++||+|+||||++|+|||||||||++||+|++++|+|||||||
T Consensus 100 ~-~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGS 178 (485)
T 3ip4_A 100 V-PIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGS 178 (485)
T ss_dssp C-CSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEECSSST
T ss_pred C-CCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHHHHhhcCCCceeeeccCCcc
Confidence 4 579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceeecCCCCcccCCCCCCCCCCCceeccCCCCHHHHHHHHHHHcCCCCCCCCCCCCCCCcccccccCCCCC
Q 012667 160 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSIS 239 (458)
Q Consensus 160 iR~PAa~~Gv~G~kPt~g~~s~~G~~p~~~~ld~~Gpmarsv~Dl~~l~~~l~~~d~~d~~~~~~p~~~~~~~~~~~~~~ 239 (458)
||+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|.++|+.|+.+...|..++... ....++
T Consensus 179 IRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~~~~~~~~~~~~~-~~~~~~ 257 (485)
T 3ip4_A 179 IRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSE-IGKDIK 257 (485)
T ss_dssp THHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCCCCSTT-TTCCCT
T ss_pred hhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCcccccccccCccchhhh-hccCcc
Confidence 9999999999999999999999999999999999999999999999999999999988876554433222111 123578
Q ss_pred CeEEEEeCCCCc-CCCHHHHHHHHHHHHHHHHhcCcEEEEeeCCChHHHHHHHHHHHHHHHHHHHHHH------------
Q 012667 240 AIKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY------------ 306 (458)
Q Consensus 240 ~lrIgv~~~~~~-~~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~~~~~~~~~~~~~~~e~~~~~~~~------------ 306 (458)
++||||+.+++. .++++++++++++++.|+++ ||+|+++++|.++.....+..++..|+..++.++
T Consensus 258 ~lrigv~~~~~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~~~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 336 (485)
T 3ip4_A 258 GLKVALPKEYLGEGVADDVKEAVQNAVETLKSL-GAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEA 336 (485)
T ss_dssp TCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHT-TCEEEEECCTTGGGHHHHHHHHHHHHHHHHTTTCSSSSSSCCCTTC
T ss_pred CcEEEEECCcccCCCCHHHHHHHHHHHHHHHHC-CCEEEEeCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence 999999988664 48999999999999999998 9999999999877777777777888887654322
Q ss_pred ------HHhcCCCCCCHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHHHhccCCEEEccCCCCCcccccchhh
Q 012667 307 ------LQKINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDAL 375 (458)
Q Consensus 307 ------~~~~~~~~~~~~~~~~l~~~~-----~~s~~~y~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~ 375 (458)
+...+.+.+.++++.++..+. .....+|.++++.|+++++.+.++|+++|+||+||++.+||+++....
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~ 416 (485)
T 3ip4_A 337 HSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEID 416 (485)
T ss_dssp CSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTT
T ss_pred ccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccC
Confidence 111112346777776665443 223346889999999999999999999999999999999999875321
Q ss_pred hcCcchhhhhhhhhcccccccccCCCeEEEecccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhccccCCCCc
Q 012667 376 KTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPK 449 (458)
Q Consensus 376 ~~~~~~~~~~~~~~~~t~~~Nl~g~PaisvP~g~~~~glPvGlQlvg~~~~D~~ll~~a~~lE~~~~~~~~~p~ 449 (458)
+ .........||.+||++|+|+++||+|++ +|||+||||||++|+|+.||++|++||+.++|..++|+
T Consensus 417 ---~--~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlqlvg~~~~d~~lL~~A~~lE~~~~~~~~~p~ 484 (485)
T 3ip4_A 417 ---D--PLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVAYQYETQYNLHDVYEK 484 (485)
T ss_dssp ---C--HHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHHHHHHHSCCTTTGGG
T ss_pred ---C--hHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEeEEEEcCCCCHHHHHHHHHHHHHhcCcccCCCC
Confidence 1 11111122489999999999999999997 89999999999999999999999999999999888775
No 2
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=5.8e-105 Score=798.59 Aligned_cols=414 Identities=27% Similarity=0.386 Sum_probs=374.2
Q ss_pred CHHHHHHHHHHhhCCCCCCceEEEecCHHHHHHHHHHHHHHHHcCCCCCCCcCcEEEEeeccCCCCccCCCCccccccCC
Q 012667 1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVR 80 (458)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~g~~~~~L~Gipi~vKD~~~v~g~~tt~Gs~~~~~~~ 80 (458)
||+++|++||++.| + +|||+++++|+|+++|+++|+++++|+.+||||||||+|||||||+|++||+||..+ +.
T Consensus 19 el~~a~l~ri~~~~---~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~--~~ 92 (434)
T 2dc0_A 19 ALLEEALERAKAFQ---D-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTRAGTKAP--LP 92 (434)
T ss_dssp HHHHHHHHHHHHTG---G-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTTBCCCTTCSSC--CC
T ss_pred HHHHHHHHHHHHhC---C-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCCcccCCCCccc--CC
Confidence 68999999999998 8 999999999999999999999999999999999999999999999999999999877 55
Q ss_pred CCCCCHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccceeeccCCCcc
Q 012667 81 PCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV 160 (458)
Q Consensus 81 ~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~a~gtD~gGSi 160 (458)
++++|+++|++|+++|||++||||||||+++.+|.|++||+|+||||++++|||||||||++||+|++++|+||||||||
T Consensus 93 ~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSI 172 (434)
T 2dc0_A 93 PLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSI 172 (434)
T ss_dssp CCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHHTSSSCEEEECSSSTT
T ss_pred CCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCCCceeeecCCChhh
Confidence 54799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeecCCCCcccCCCCCCCCCCCceeccCCCCHHHHHHHHHHHcCCCCCCCCCCCCCCCcccccccCCCCCC
Q 012667 161 RMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISA 240 (458)
Q Consensus 161 R~PAa~~Gv~G~kPt~g~~s~~G~~p~~~~ld~~Gpmarsv~Dl~~l~~~l~~~d~~d~~~~~~p~~~~~~~~~~~~~~~ 240 (458)
|+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|.++ +.|+ ...++
T Consensus 173 RiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~----------------~~~~~ 235 (434)
T 2dc0_A 173 RIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPL----------------EGVQN 235 (434)
T ss_dssp HHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCC----------------CCCCS
T ss_pred hhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCc----------------ccccC
Confidence 999999999999999999999999999999999999999999999999999996 4432 12578
Q ss_pred eEEEEeCCCC-cCCCHHHHHHHHHHHHHHHHhcCcEEEEeeCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 012667 241 IKLAKYDAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDA 319 (458)
Q Consensus 241 lrIgv~~~~~-~~~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 319 (458)
+||||+.+++ ..++++++++++++++.|+++ |++|+++++| ++.....+..++..|....+..++.. +.+.+.+.+
T Consensus 236 lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~~~~p-~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~ 312 (434)
T 2dc0_A 236 PVFGVPLDFLEGRLGVEVRKAFTRLLEDLPAL-RAEVREVSLP-LEGVYEVYTRLVRYEAARIHEKALKE-HPEGFSPQV 312 (434)
T ss_dssp CEEEECHHHHTTCSCHHHHHHHHHHHHHTTTT-TCEEEECCCC-CTTHHHHHHHHHHHHHHHHSHHHHHH-CGGGSCHHH
T ss_pred CEEEEECccccCCCCHHHHHHHHHHHHHHHHC-CCEEEEeCCC-cHHHHHHHHHHHHHHHHHHHHHHHHh-chhhcCHHH
Confidence 9999987654 348999999999999999998 9999999998 66666677778888998888777765 556799999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHhccCCEEEccCCCCCcccccchhhhcCcchhhhhhhhhcccccccccC
Q 012667 320 RVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLG 399 (458)
Q Consensus 320 ~~~l~~~~~~s~~~y~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~g 399 (458)
+.++..+..++..+|.++++.|+++++.+.++|+++|+||+||++.++|+++................+..||.+||++|
T Consensus 313 ~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G 392 (434)
T 2dc0_A 313 REALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLG 392 (434)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhC
Confidence 99999999999999999999999999999999999999999999999999875321000000111223467999999999
Q ss_pred CCeEEEecccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhc
Q 012667 400 LPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALC 441 (458)
Q Consensus 400 ~PaisvP~g~~~~glPvGlQlvg~~~~D~~ll~~a~~lE~~~ 441 (458)
+|+++||+|+ .+|||+||||||++|+|+.||++|++||+++
T Consensus 393 ~PaisvP~g~-~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~~ 433 (434)
T 2dc0_A 393 VPTLALPFAK-VEGMPVGLQVVGAYGEDGKVLALGGWLEARL 433 (434)
T ss_dssp CCEEEEEEEE-ETTEEEEEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCeEEEecCC-CCCCCeEEEEECCCCchHHHHHHHHHHHHhh
Confidence 9999999999 7899999999999999999999999999875
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=1.5e-103 Score=795.92 Aligned_cols=431 Identities=29% Similarity=0.456 Sum_probs=373.3
Q ss_pred CHHHHHHHHHHhhCCCCCCceEEEecCHHHHHHHHHHHHHHHHcCCCCCCCcCcEEEEeeccCCCCccCCCCccccccCC
Q 012667 1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVR 80 (458)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~g~~~~~L~Gipi~vKD~~~v~g~~tt~Gs~~~~~~~ 80 (458)
||+++|++||+++| +.+|||+++++|+|+++|+++|++ .||||||||+|||||+++|++||+||..+.++
T Consensus 23 el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~~d~~------~gpL~GvPi~vKD~~~~~G~~tt~Gs~~~~~~- 92 (478)
T 3h0l_A 23 EVVESFYDRYNQTE---EKVKAYITPLYGKALKQAESLKER------ELPLFGIPIAVKDNILVEGEKTTCASKILENF- 92 (478)
T ss_dssp HHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHTCCCT------TSTTTTCEEEEETTBCCTTSBCCTTCGGGTTC-
T ss_pred HHHHHHHHHHHHhC---CcCcEEEEeChHHHHHHHHhhchh------cCCcCCceEEEEcCccCCCCCcCCcCHhhcCC-
Confidence 68999999999998 899999999999999999999975 68999999999999999999999999987765
Q ss_pred CCCCCHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccceeeccCCCcc
Q 012667 81 PCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV 160 (458)
Q Consensus 81 ~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~a~gtD~gGSi 160 (458)
++++|+++|++|+++|||++||||||||+++.+|.|++||+|+||||++++|||||||||++||+|++++|+||||||||
T Consensus 93 ~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSi 172 (478)
T 3h0l_A 93 VAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSI 172 (478)
T ss_dssp BCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTSSSCEEEECSSSTT
T ss_pred CCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCCCceeeecCCCCcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeecCCCCcccCCCCCCCCCCCceeccCCCCHHHHHHHHHHHcCCCCCCCCCCCCCCCcccccccCCCCCC
Q 012667 161 RMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISA 240 (458)
Q Consensus 161 R~PAa~~Gv~G~kPt~g~~s~~G~~p~~~~ld~~Gpmarsv~Dl~~l~~~l~~~d~~d~~~~~~p~~~~~~~~~~~~~~~ 240 (458)
|+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|.++|+.|+.+...|..++... ....+++
T Consensus 173 R~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~~~~~~~-~~~~~~~ 251 (478)
T 3h0l_A 173 RQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEWSEE-VKKEVKG 251 (478)
T ss_dssp HHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCCCHHHH-TTCCCTT
T ss_pred hhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccccCccchhhh-hccCCCC
Confidence 999999999999999999999999999999999999999999999999999999988876554433222111 1235789
Q ss_pred eEEEEeCCCCcC-CCHHHHHHHHHHHHHHHHhcCcEEEEeeCCChHHHHHHHHHHHHHHHHHHHHHH-------------
Q 012667 241 IKLAKYDAWFND-CSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY------------- 306 (458)
Q Consensus 241 lrIgv~~~~~~~-~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~~~~~~~~~~~~~~~e~~~~~~~~------------- 306 (458)
+||||+.+++.. ++++++++++++++.|+++ ||+|+++++|.++.....+..++..|+..++.++
T Consensus 252 lrIgv~~~~~~~~~~p~v~~a~~~a~~~L~~~-G~~v~~v~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 330 (478)
T 3h0l_A 252 LKIGLPKEFFEYELQPQVKEAFENFIKELEKE-GFEIKEVSLPHVKYSIPTYYIIAPSEASSNLARYDGVRYGYRAKEYK 330 (478)
T ss_dssp CEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHT-TCEEEEECCTTGGGHHHHHHHHHHHHHHHHTTTCSSSSSSCCCSCCS
T ss_pred CEEEEECCcccCCCCHHHHHHHHHHHHHHHHC-CCEEEEeCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence 999999887644 8999999999999999998 9999999999877777777788888887755322
Q ss_pred -----HHhcCCCCCCHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHHHhccCCEEEccCCCCCcccccchhhh
Q 012667 307 -----LQKINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALK 376 (458)
Q Consensus 307 -----~~~~~~~~~~~~~~~~l~~~~-----~~s~~~y~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~ 376 (458)
+...+...+.++++.++..+. .....+|.++++.|+++++.+.++|+++|+||+||++.+||+++...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~-- 408 (478)
T 3h0l_A 331 DIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERL-- 408 (478)
T ss_dssp SHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTS--
T ss_pred cHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCccccc--
Confidence 111112346777777665543 23345688999999999999999999999999999999999987532
Q ss_pred cCcchhhhhhhhhcccccccccCCCeEEEecccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhccccCCCCc
Q 012667 377 TGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPK 449 (458)
Q Consensus 377 ~~~~~~~~~~~~~~~t~~~Nl~g~PaisvP~g~~~~glPvGlQlvg~~~~D~~ll~~a~~lE~~~~~~~~~p~ 449 (458)
.+ .........||.+||++|+|+++||+|+ .+|||+||||||++|+|+.||++|++||+.++|..++|-
T Consensus 409 -~~--~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~~~~~~~p~ 477 (478)
T 3h0l_A 409 -EN--PIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPVGGQLIGKHWDETTLLQISYLWEQKFKHYEKIPL 477 (478)
T ss_dssp -SS--HHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCGGGCCSC
T ss_pred -CC--hHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCcccCCCC
Confidence 11 1111122248999999999999999999 789999999999999999999999999999998877763
No 4
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=5.2e-102 Score=790.85 Aligned_cols=435 Identities=22% Similarity=0.302 Sum_probs=375.8
Q ss_pred CHHHHHHHHHHhhCCCCCCceEEEecCHHHHHHHHHHHHHHHHcCCCCCCCcCcEEEEeecc-CCCCccCCCCccccc--
Q 012667 1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEI-DCSPYPTTGGTKWLH-- 77 (458)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~g~~~~~L~Gipi~vKD~~-~v~g~~tt~Gs~~~~-- 77 (458)
||+++|++||++.| +.+|||+++++|+|+++|++ | .||||||||+||||| +|+|++||+||..+.
T Consensus 26 el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~-d--------~gpL~GvPi~vKD~~~~v~G~~Tt~Gs~~~~~~ 93 (493)
T 3a2q_A 26 ELLEATIAHVQAVN---PEINAVIIPLFEKARRESEL-A--------SGPFAGVPYLLKDLTVVSQGDINTSSIKGMKES 93 (493)
T ss_dssp HHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHH-C--------CSTTTTCEEEEESSSSCCTTSBCCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhC---CccCeEEecCHHHHHHHhhh-c--------CCCcCCcEEEEecCCcCcCCCcccccChhhhhc
Confidence 68999999999998 89999999999999999998 7 489999999999999 999999999998876
Q ss_pred cCCCCCCCHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccceeeccCC
Q 012667 78 KVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGG 157 (458)
Q Consensus 78 ~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~a~gtD~g 157 (458)
++ ++.+|+++|++|+++|||++||||||||+++.+|.|++||+|+||||++|+|||||||||++||+|++++|+|||||
T Consensus 94 ~~-~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVAaG~~~~alGtDtg 172 (493)
T 3a2q_A 94 GY-RADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAA 172 (493)
T ss_dssp TC-BCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESS
T ss_pred CC-CCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceeeecCCC
Confidence 65 45799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccceeecCCCCcccCCCC--C-CCCCCCceeccCCCCHHHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 012667 158 GSVRMPAALCGVVGFKPTFGRIPLSGV--L-PLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKS 234 (458)
Q Consensus 158 GSiR~PAa~~Gv~G~kPt~g~~s~~G~--~-p~~~~ld~~Gpmarsv~Dl~~l~~~l~~~d~~d~~~~~~p~~~~~~~~~ 234 (458)
||||+||+||||||||||+||+|+.|+ . ++++++|++|||||||+|+++++++|.++|+.|+.+...|..++... .
T Consensus 173 GSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~~~-~ 251 (493)
T 3a2q_A 173 GAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTASRPYAQG-I 251 (493)
T ss_dssp STTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCCCCCCSSCHHHH-T
T ss_pred cccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCCCcccccCCCcchhhh-c
Confidence 999999999999999999999999998 5 77789999999999999999999999999888765433332111110 1
Q ss_pred CCCCCCeEEEEeCCCC--c-CCCHHHHHHHHHHHHHHHHhcCcEEEEeeCCChH--HHHHHHHHHHHHHHHHHHHHH---
Q 012667 235 ATSISAIKLAKYDAWF--N-DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIE--VMRLAHYLTIGSECSTSLSSY--- 306 (458)
Q Consensus 235 ~~~~~~lrIgv~~~~~--~-~~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~~~--~~~~~~~~~~~~e~~~~~~~~--- 306 (458)
....+++||||+.+++ . .++++++++++++++.|+++ |++|+++++|.+. .....+..++..|....+..+
T Consensus 252 ~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 330 (493)
T 3a2q_A 252 SENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAAL-GHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERNGEL 330 (493)
T ss_dssp TSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHT-TCEEEECCCGGGGCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHC-CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346889999998765 3 48999999999999999998 9999999987444 455566677778887744433
Q ss_pred HH-hcCCCCCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCEEEccCCCCCcccccchhhh-c----Cc
Q 012667 307 LQ-KINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVF-AKADVIVVPTTGVTAYEIKDDALK-T----GE 379 (458)
Q Consensus 307 ~~-~~~~~~~~~~~~~~l~~~~~~s~~~y~~a~~~r~~~~~~~~~~f-~~~D~ll~Pt~~~~a~~~~~~~~~-~----~~ 379 (458)
+. ......+.+.++.+++.+..++..+|.++++.|+++++.+.++| +++|+||+||++.++|++++.... . +.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~ 410 (493)
T 3a2q_A 331 IGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGR 410 (493)
T ss_dssp HTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSS
T ss_pred hcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCcccccccccccccc
Confidence 32 11345689999999999999999999999999999999999999 999999999999999998753211 0 00
Q ss_pred -ch-hhhhhhhhcccccccccCCCeEEEecccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhccccCCCCch
Q 012667 380 -LD-YIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKV 450 (458)
Q Consensus 380 -~~-~~~~~~~~~~t~~~Nl~g~PaisvP~g~~~~glPvGlQlvg~~~~D~~ll~~a~~lE~~~~~~~~~p~~ 450 (458)
.. ......+..||.+||++|+|+++||+|++.+|||+||||||++|+|+.||++|++||++++|..++|+.
T Consensus 411 ~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~A~~lE~~~~~~~~~p~~ 483 (493)
T 3a2q_A 411 QSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQL 483 (493)
T ss_dssp CGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHHHHHHHHHHHSCCTTCCCGG
T ss_pred cchhhhhhhhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHHHHHHHHHHHhcCcccCCCCC
Confidence 00 111234467999999999999999999988999999999999999999999999999999887777764
No 5
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=8e-103 Score=788.38 Aligned_cols=426 Identities=30% Similarity=0.489 Sum_probs=371.2
Q ss_pred CHHHHHHHHHHhhCCCCCCceEEEecCHHHHHHHHHHHHHHHHcCCCCCCCcCcEEEEeeccCCCCccCCCCccccccCC
Q 012667 1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVR 80 (458)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~g~~~~~L~Gipi~vKD~~~v~g~~tt~Gs~~~~~~~ 80 (458)
||+++|++||++.| +.+|||++++ |+|+++|+++|+++ |||||||+|||||+|+|++||+||..+.++.
T Consensus 19 el~~a~l~ri~~~~---~~lna~~~~~-~~al~~A~~~d~~~-------pL~GvPi~vKD~~~~~G~~tt~Gs~~~~~~~ 87 (471)
T 3kfu_E 19 EVAQAYLKRVQELD---PGLGAFLSLN-ERLLEEAEAVDPGL-------PLAGLVVAVKDNIATRGLRTTAGSRLLENFV 87 (471)
T ss_dssp HHHHHHHHHHHHHH---HHHCCEEEEC-CTTTHHHHTSCCSC-------TTTTCEEEEETTBCCTTSCCCTTCSTTTTCC
T ss_pred HHHHHHHHHHHHhC---CCccEEEEeC-HHHHHHHHhcCccC-------CcCCCeEEEECCcccCCccccccCHhHcCCC
Confidence 68999999999998 8999999999 99999999999642 9999999999999999999999999887664
Q ss_pred CCCCCHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccceeeccCCCcc
Q 012667 81 PCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV 160 (458)
Q Consensus 81 ~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~a~gtD~gGSi 160 (458)
+.+|+++|++|+++|||++||||||||+++.+|.|++||+|+||||++++|||||||||++||+|++++|+||||||||
T Consensus 88 -~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSi 166 (471)
T 3kfu_E 88 -PPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSV 166 (471)
T ss_dssp -CSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTT
T ss_pred -CCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccccCCCCcc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeecCCCCcccCCCCCCCCCCCceeccCCCCHHHHHHHHHHHcCCCCCCCCCCCCCCCcccccccCCCCCC
Q 012667 161 RMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISA 240 (458)
Q Consensus 161 R~PAa~~Gv~G~kPt~g~~s~~G~~p~~~~ld~~Gpmarsv~Dl~~l~~~l~~~d~~d~~~~~~p~~~~~~~~~~~~~~~ 240 (458)
|+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|.++|+.|+.+...| .++... ....+++
T Consensus 167 R~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~-~~~~~~-~~~~~~~ 244 (471)
T 3kfu_E 167 RQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLP-PRFQEA-LEGPLPP 244 (471)
T ss_dssp HHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCC-CCTTCC-SCCCCSS
T ss_pred ccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCC-cchhhh-hccCCCC
Confidence 99999999999999999999999999999999999999999999999999999998876654433 222111 1235789
Q ss_pred eEEEEeCCCCcCCCHHHHHHHHHHHHHHHHhcCcEEEEeeCCChHHHHHHHHHHHHHHHHHHHHHH--------------
Q 012667 241 IKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY-------------- 306 (458)
Q Consensus 241 lrIgv~~~~~~~~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~~~~~~~~~~~~~~~e~~~~~~~~-------------- 306 (458)
+||||+.+++..++++++++++++++.|+++ ||+|+++++|.++.....+..++..|+..++.++
T Consensus 245 lrIgv~~~~~~~~~p~v~~a~~~a~~~L~~~-G~~v~~v~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~~~ 323 (471)
T 3kfu_E 245 LRLGVVREALAGNSPGVERALEEALKVFREL-GLSVREVSWPSLPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEV 323 (471)
T ss_dssp CEEEEEGGGTTTCCHHHHHHHHHHHHHHHTT-TCEEEEECCTTGGGHHHHHHHHHHHHHHHHGGGCSTTTTSCCCCCSSS
T ss_pred CEEEEECCccCCCCHHHHHHHHHHHHHHHHc-CCeeeeecCccHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhH
Confidence 9999998876448999999999999999998 9999999999877777777788888887655432
Q ss_pred ---HHhcCCCCCCHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHHHhccCCEEEccCCCCCcccccchhhhcC
Q 012667 307 ---LQKINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTG 378 (458)
Q Consensus 307 ---~~~~~~~~~~~~~~~~l~~~~-----~~s~~~y~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~ 378 (458)
+...+ ..+.++++.++..+. .++..+|.++++.|+++++.+.++|+++|+||+||++.++|+++....
T Consensus 324 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~--- 399 (471)
T 3kfu_E 324 EGMMEATR-ALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRD--- 399 (471)
T ss_dssp HHHHHHHH-TTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTCS---
T ss_pred HHHHHhhh-hhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCCCccccccc---
Confidence 22212 238888887776553 234458999999999999999999999999999999999999865311
Q ss_pred cchhhhhhhhhcccccccccCCCeEEEecccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhc-cccCCCCc
Q 012667 379 ELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALC-ISEFRKPK 449 (458)
Q Consensus 379 ~~~~~~~~~~~~~t~~~Nl~g~PaisvP~g~~~~glPvGlQlvg~~~~D~~ll~~a~~lE~~~-~~~~~~p~ 449 (458)
....+ ....||.+||++|+|+++||+|+ .+|||+||||||++|+|+.||++|++||++. +|..++|.
T Consensus 400 --~~~~~-~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~g~w~~~~p~ 467 (471)
T 3kfu_E 400 --PLAMY-REDLYTVGANLTGLPALSFPAGF-EGHLPVGLQLLAPWGEDERLLRAALAFEEATARAHLKAPL 467 (471)
T ss_dssp --HHHHH-GGGTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECSTTCHHHHHHHHHHHHHHSSCCCCCTTC
T ss_pred --hHHHH-HHhhhhhcchhhCCCeEEEeCCC-CCCCCeEEEEECCCCCHHHHHHHHHHHHHHhcCcccCCCc
Confidence 11111 11238999999999999999999 8999999999999999999999999999999 88887774
No 6
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=1.1e-101 Score=789.65 Aligned_cols=430 Identities=29% Similarity=0.435 Sum_probs=369.2
Q ss_pred CHHHHHHHHHHhhCCCCCCceEEEecCHHHHHHHHHHHHHHHHcCCCCCCCcCcEEEEeeccCCCCccCCCCccccccCC
Q 012667 1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVR 80 (458)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~g~~~~~L~Gipi~vKD~~~v~g~~tt~Gs~~~~~~~ 80 (458)
||+++|++||+++|+.++.+|||+++++| |+++|+++|+++++|+..||||||||+|||||+|+|++||+||..+.++
T Consensus 29 el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~~~- 106 (503)
T 1m22_A 29 TLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQGF- 106 (503)
T ss_dssp HHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCCTTSCCCTTCGGGTTC-
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCceeEeecccccCCCCcCCCCHhhcCC-
Confidence 68999999999998666889999999998 9999999999999999999999999999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHcCCeEEEecccccccc-----CCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccceeecc
Q 012667 81 PCTGDACCVMRLRLCGAILVGKTNMHELGA-----GTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVD 155 (458)
Q Consensus 81 ~~~~da~~v~~L~~aGai~~gkt~~~e~~~-----~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~a~gtD 155 (458)
++ +|+++|++||++|||++||||||||++ +.+|+|++||+|+||||++|+|||||||||++||+|++++|+|||
T Consensus 107 ~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~alGtD 185 (503)
T 1m22_A 107 RP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTE 185 (503)
T ss_dssp CC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCCSSSHHHHHHHHTTSSSEEEEEE
T ss_pred CC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHcCCCceeeecC
Confidence 55 999999999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccceeecCCCCcccCCCCCCCCCCCceeccCCCCHHHHHHHHHHHcCCCCCCCCCCCCCC---Cccccc
Q 012667 156 GGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPK---VSFPLL 232 (458)
Q Consensus 156 ~gGSiR~PAa~~Gv~G~kPt~g~~s~~G~~p~~~~ld~~Gpmarsv~Dl~~l~~~l~~~d~~d~~~~~~p~---~~~~~~ 232 (458)
||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.++|+.|+.+...|. .++...
T Consensus 186 tgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~~~~~~~~~~~~ 265 (503)
T 1m22_A 186 TDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDYTAR 265 (503)
T ss_dssp SSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCCCCTTCGGGGGCTTCCCCCGGGG
T ss_pred CCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHHHcCCCCCCccccccccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999888754433221 111111
Q ss_pred ccCCCCCCeEEEEeCCCCcCCCHHHHHHHHHHHHHHHHhcCcEEEEeeCCChHHHHHHHHHHHHHHHHHHHHHHHHhc--
Q 012667 233 KSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKI-- 310 (458)
Q Consensus 233 ~~~~~~~~lrIgv~~~~~~~~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~-- 310 (458)
.....++++||||+.+++ .++++++++++++++.|+++ |++|+++++|.+.++...+..++..|+..++..++...
T Consensus 266 ~~~~~~~~lrIgv~~~~~-~~~~~v~~a~~~a~~~L~~~-G~~v~~~~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 343 (503)
T 1m22_A 266 LDPQGLRGKRIGLLQTPL-LKYRGMPPLIEQAATELRRA-GAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRA 343 (503)
T ss_dssp CCTTTTTTCEEEEECSGG-GGSTTHHHHHHHHHHHHHHT-TCEEEEECCTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCCCCEEEEECccc-cCCHHHHHHHHHHHHHHHHc-CCEEEEeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 111246899999998765 48999999999999999998 99999999987654444555666778777766665431
Q ss_pred ------------------CCCCCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--HHHHhcc--CCEEEccCCCCCcc
Q 012667 311 ------------------NCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQI--HRNVFAK--ADVIVVPTTGVTAY 368 (458)
Q Consensus 311 ------------------~~~~~~~~~~~~l~~~~~~s~~~y~~a~~~r~~~~~~--~~~~f~~--~D~ll~Pt~~~~a~ 368 (458)
....+.+.++.++..+..++..+|.++++.|+++++. +.++|++ +|+||+||+ .++|
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~ 422 (503)
T 1m22_A 344 PLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAW 422 (503)
T ss_dssp SCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCC
T ss_pred ccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCc
Confidence 0124566677777778889999999999888888765 9999975 999999999 4666
Q ss_pred cccchhhhcCcchhhhhhhhhcccccccccCCCeEEEecccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhccccCCCC
Q 012667 369 EIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKP 448 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~g~PaisvP~g~~~~glPvGlQlvg~~~~D~~ll~~a~~lE~~~~~~~~~p 448 (458)
+++.. .+.. ...||.+||++|+|+|+||+|++ +|||+||||||++|+|+.||++|++||+++++ +++|
T Consensus 423 ~~~~~----~~~~------~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~~~-~~~p 490 (503)
T 1m22_A 423 PIRSE----GDDF------PGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLFMGTAWSEPKLIEMAYAYEQRTRA-RRPP 490 (503)
T ss_dssp BTTC-------CC------TTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHHHHHHHHCC-CCCC
T ss_pred ccccc----cCcc------cccccccchhhCCCeEEeccccC-CCCCeEEEEECCCCChHHHHHHHHHHHHhhCC-CCCC
Confidence 65421 1100 14689999999999999999987 89999999999999999999999999999975 3443
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=7.4e-100 Score=771.73 Aligned_cols=419 Identities=29% Similarity=0.445 Sum_probs=356.2
Q ss_pred CHHHHHHHHHHhhCCCCCCceEEEecCHHHHHHHHHHHHHHHHcCCCCCCCcCcEEEEeeccCCCCccCCCCccccccCC
Q 012667 1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVR 80 (458)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~g~~~~~L~Gipi~vKD~~~v~g~~tt~Gs~~~~~~~ 80 (458)
||+++|++||+++| +.+|||+++++|+|+ |+ + ||||||||+|||||+|+|++||+||..+.++
T Consensus 25 el~~a~l~ri~~~~---~~lna~~~~~~~~al------d~-----~--gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~~~- 87 (476)
T 2gi3_A 25 KLPQLSLETIKRLD---PHVKAFISVRENVSV------EK-----K--GKFWGIPVAIKDNILTLGMRTTCASRILENY- 87 (476)
T ss_dssp THHHHHHHHHHHHH---HHHCCEEEECCCCCC------CC-----C--STTTTCEEEEETTBCCSSSCCCTTCGGGTTC-
T ss_pred HHHHHHHHHHHHhC---CceeEEEecChhhhh------hc-----c--CCcCCceEEEEcCccCCCCccCccChhhcCC-
Confidence 79999999999998 899999999998887 32 2 8999999999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccceeeccCCCcc
Q 012667 81 PCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV 160 (458)
Q Consensus 81 ~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~a~gtD~gGSi 160 (458)
++++|+++|++||++|||++||||||||+++.+|.|++||+|+||||++|+|||||||||++||+|++++|+||||||||
T Consensus 88 ~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSI 167 (476)
T 2gi3_A 88 ESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSV 167 (476)
T ss_dssp CCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTT
T ss_pred CCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCceEeecCCCchh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeecCCCCcccCCCCCCCCCCCceeccCCCCHHHHHHHHHHHcCCCCCCCCCCCCCCCcccccccCCCCCC
Q 012667 161 RMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISA 240 (458)
Q Consensus 161 R~PAa~~Gv~G~kPt~g~~s~~G~~p~~~~ld~~Gpmarsv~Dl~~l~~~l~~~d~~d~~~~~~p~~~~~~~~~~~~~~~ 240 (458)
|+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|.++|+.|+.+...|. ++... ....+++
T Consensus 168 RiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~-~~~~~-~~~~~~~ 245 (476)
T 2gi3_A 168 RQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKV-DFLSE-IEEGVSG 245 (476)
T ss_dssp HHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCC-CSSTT-TTSCCTT
T ss_pred hhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCc-chhhh-hhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999887765433332 11110 1234688
Q ss_pred eEEEEeCCCC-cCCCHHHHHHHHHHHHHHHHhcCcEEEEeeCCChHHHHHHHHHHHHHHHHHHHHHH-------------
Q 012667 241 IKLAKYDAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY------------- 306 (458)
Q Consensus 241 lrIgv~~~~~-~~~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~~~~~~~~~~~~~~~e~~~~~~~~------------- 306 (458)
+||||+.+++ ..++++++++++++++.|+++ |++|+++++|.+......+..+...|...++..+
T Consensus 246 lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~~~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 324 (476)
T 2gi3_A 246 MKFAVPEEIYEHDIEEGVSERFEEALKLLERL-GAKVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKG 324 (476)
T ss_dssp CEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHT-TCEEEEECCTTGGGHHHHHHHHHHHHHHTC-----------------
T ss_pred CEEEEECccccCCCCHHHHHHHHHHHHHHHHC-CCEEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 9999998875 348999999999999999998 9999999998766655566667777777655332
Q ss_pred ----HHhcCCCCCCHHHHHHHHhccCCCH-----HHHHHHHHHHHHHHHHHHHHhccCCEEEccCCCCCcccccchhhhc
Q 012667 307 ----LQKINCSDQGWDARVALSVYGSFSS-----QEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKT 377 (458)
Q Consensus 307 ----~~~~~~~~~~~~~~~~l~~~~~~s~-----~~y~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~ 377 (458)
+...+.+.+.+.++.++..+..++. .+|.++++.|+++++.+.++|+++|+||+||++.++|++++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~---- 400 (476)
T 2gi3_A 325 LREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEI---- 400 (476)
T ss_dssp -------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTC----
T ss_pred HHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCccccc----
Confidence 1111234567788777766654433 378889999999999999999999999999999999998651
Q ss_pred CcchhhhhhhhhcccccccccCCCeEEEecccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhccccCC
Q 012667 378 GELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFR 446 (458)
Q Consensus 378 ~~~~~~~~~~~~~~t~~~Nl~g~PaisvP~g~~~~glPvGlQlvg~~~~D~~ll~~a~~lE~~~~~~~~ 446 (458)
.. ..... ....||.+||++|+|+++||+|++ +|||+||||||++|+|+.||++|++||++++|..+
T Consensus 401 ~~-~~~~~-~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~~d~~lL~~A~~lE~~~~~~~~ 466 (476)
T 2gi3_A 401 KD-PLTYY-LMDIFTIPANLAGLPAISVPFGFS-NNLPVGVQVIGRRFADGKVFRIARAIEKNSPYNEN 466 (476)
T ss_dssp CC-HHHHH-TTTTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECCTTCHHHHHHHHHHHHHHCTTSBT
T ss_pred cc-chhhh-hccceeccccccCCceEEEecccC-CCCCeEEEEEcCCCCHHHHHHHHHHHHHhcCcccc
Confidence 11 01111 113689999999999999999986 79999999999999999999999999999987544
No 8
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=1.1e-97 Score=740.76 Aligned_cols=390 Identities=26% Similarity=0.360 Sum_probs=350.2
Q ss_pred CHHHHHHHHHHhhCCCCCCceEEEecCHHHHHHHHHHHHHHHHcCCCCCCCcCcEEEEeeccCCCCccCCCCccccccCC
Q 012667 1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVR 80 (458)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~g~~~~~L~Gipi~vKD~~~v~g~~tt~Gs~~~~~~~ 80 (458)
||+++|++||++.| +.+|||+++++|+| + +..||||||||+|||||+|+|++||+||..+.++
T Consensus 20 el~~a~l~ri~~~~---~~lna~~~~~~~~a-~------------~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~- 82 (414)
T 1o9p_A 20 AAIAQSHAAIEARE---KEVHAFVRHDKSAR-A------------QASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGW- 82 (414)
T ss_dssp HHHHHHHHHHHHHH---HHHCCEEEECTTCC-C------------CSSSTTTTCEEEEETTBCCSSSCCCTTSGGGTTC-
T ss_pred HHHHHHHHHHHHhC---ccccEEEEeCHHHh-c------------ccCCCcCCCEEEEEcccccCCcccCcCCHhhccC-
Confidence 68999999999998 89999999998877 2 3578999999999999999999999999988766
Q ss_pred CCCCCHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccceeeccCCCcc
Q 012667 81 PCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV 160 (458)
Q Consensus 81 ~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~a~gtD~gGSi 160 (458)
++.+|+++|++|+++|||++||||||||++ .|+ |+|+||||++|+|||||||||++||+|++++|+||||||||
T Consensus 83 ~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSI 156 (414)
T 1o9p_A 83 QPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSV 156 (414)
T ss_dssp CCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTT
T ss_pred CCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcCCCceEEeeCCchhh
Confidence 457999999999999999999999999998 455 99999999999999999999999999999999999999999
Q ss_pred ccccccccceeecCCCCcccCCCCCCCCCCCceeccCCCCHHHHHHHHHHHcCCCCCCCCCCCCCCCcccccccCCCCCC
Q 012667 161 RMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISA 240 (458)
Q Consensus 161 R~PAa~~Gv~G~kPt~g~~s~~G~~p~~~~ld~~Gpmarsv~Dl~~l~~~l~~~d~~d~~~~~~p~~~~~~~~~~~~~~~ 240 (458)
|+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|.+++ +. .+ ....++
T Consensus 157 RiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~--~~----~~---------~~~~~~ 221 (414)
T 1o9p_A 157 IRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS--EF----SG---------IVPAKA 221 (414)
T ss_dssp HHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCG--GG----SS---------CCCCSS
T ss_pred hHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCC--cc----cc---------ccCCCC
Confidence 9999999999999999999999999999999999999999999999999999954 10 00 123578
Q ss_pred eEEEEeCCCCc-CCCHHHHHHHHHHHHHHHHhcCcEEEEeeCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 012667 241 IKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPN-IEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWD 318 (458)
Q Consensus 241 lrIgv~~~~~~-~~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 318 (458)
+|||++.+++. .++++++++++++++.|+++ |++|+++++|. +..+...+..++..|....+..++.. ..+.+.+.
T Consensus 222 lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~ 299 (414)
T 1o9p_A 222 PRIGVVRQEFAGAVEPAAEQGLQAAIKAAERA-GASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSE-HHDEIAPM 299 (414)
T ss_dssp CEEEECCCGGGCCCCHHHHHHHHHHHHHHHHT-TCEEEECCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH-SGGGSCHH
T ss_pred CEEEEECccccCCCCHHHHHHHHHHHHHHHHC-CCEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHHHHh-ChhhcCHH
Confidence 99999987654 48999999999999999998 99999999884 34455556667788998888888776 55679999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHhccCCEEEccCCCCCcccccchhhhcCcchhhhhhhhhccccccccc
Q 012667 319 ARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFL 398 (458)
Q Consensus 319 ~~~~l~~~~~~s~~~y~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~ 398 (458)
++.++..+..++..+|.++++.|+++++++.++|+++|+||+||++.++|+++... .. ...||.+||++
T Consensus 300 ~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~--~~---------~~~~t~~~nl~ 368 (414)
T 1o9p_A 300 LRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALAS--TG---------DPRYNRLWTLM 368 (414)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCC--CC---------CGGGTHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccC--Cc---------ccchhhhhHhc
Confidence 99999999999999999999999999999999999999999999999999985421 01 12589999999
Q ss_pred CCCeEEEecccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhcc
Q 012667 399 GLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCI 442 (458)
Q Consensus 399 g~PaisvP~g~~~~glPvGlQlvg~~~~D~~ll~~a~~lE~~~~ 442 (458)
|+|+++||+|++. |||+||||||++|+|+.||++|++||++++
T Consensus 369 G~PaisvP~g~~~-GlPvGvqlvg~~~~d~~lL~~a~~le~~~~ 411 (414)
T 1o9p_A 369 GNPCVNVPVLKVG-GLPIGVQVIARFGNDAHALATAWFLEDALA 411 (414)
T ss_dssp CCCEEEEEEEEET-TEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCC-CCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 9999999999987 999999999999999999999999999875
No 9
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=3.8e-98 Score=763.32 Aligned_cols=434 Identities=23% Similarity=0.332 Sum_probs=357.1
Q ss_pred CHHHHHHHHHHhhCCCCCCceEEE-ecCHHHHHHHHHHHHHH---------HHcCCCCCCCcCcEEEEeeccCCCCccCC
Q 012667 1 MVAERFIAAVRESSNPPMKMSFFI-NYNEEDILKQATESTLR---------YKKGEPISVLDGVLIAVKDEIDCSPYPTT 70 (458)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~na~~-~~~~~~a~~~A~~~d~~---------~~~g~~~~~L~Gipi~vKD~~~v~g~~tt 70 (458)
|++++++++|++.+ +.+|+++ .+.++++ .++.+.|+. ..+|+..||||||||+|||||+|+|++||
T Consensus 32 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPi~vKD~i~v~G~~Tt 107 (521)
T 3a1k_A 32 ALIDGALGSYDVVD---QLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAGVPMM 107 (521)
T ss_dssp HHHHHHTHHHHHHH---HHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTTTTCEEEEETTBCCTTSCBC
T ss_pred HHHHHHHHHHHHHH---hhhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCCCCCEEEEEcCcccCCcccC
Confidence 47889999999987 5566666 6666666 566666541 12478889999999999999999999999
Q ss_pred CCccccccCCCCCCCHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccc
Q 012667 71 GGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPV 150 (458)
Q Consensus 71 ~Gs~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~ 150 (458)
+||..+.++. +++||++|++||++|||++||||||||+++.+|+|++||+|+||||++|+|||||||||++||+|++++
T Consensus 108 ~Gs~~~~~~~-~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAAVAag~~~~ 186 (521)
T 3a1k_A 108 NGSRTVEGFT-PSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDF 186 (521)
T ss_dssp TTCTTTTTBC-CSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEEEECCSSSHHHHHHHHTTSSSE
T ss_pred CCChhhcCCC-CCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHhcCCcce
Confidence 9999887664 579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCccccccccccceeecCCCCcccCCCCCCCCCCCceeccCCCCHHHHHHHHHHHcCCCCCCCCCCC-CCCCcc
Q 012667 151 ALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVS-LPKVSF 229 (458)
Q Consensus 151 a~gtD~gGSiR~PAa~~Gv~G~kPt~g~~s~~G~~p~~~~ld~~Gpmarsv~Dl~~l~~~l~~~d~~d~~~~~-~p~~~~ 229 (458)
|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+|+.|+.+.. .|..++
T Consensus 187 alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vlag~d~~D~~~~~~~~~~~~ 266 (521)
T 3a1k_A 187 AIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGDY 266 (521)
T ss_dssp EEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHHHCSCCSSCTTSCTTCCCCCS
T ss_pred ecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHHHhCCCCCCccccccCCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999999999887765422 122222
Q ss_pred cccccCCCCCCeEEEEeCCCCc--CCCHHHHHHHHHHHHHHHHhcCcEEEEeeCCChHHHHHHHHHHHHHHH--------
Q 012667 230 PLLKSATSISAIKLAKYDAWFN--DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSEC-------- 299 (458)
Q Consensus 230 ~~~~~~~~~~~lrIgv~~~~~~--~~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~~~~~~~~~~~~~~~e~-------- 299 (458)
... ....++++|||++.+++. .++++++++++++++.|+++ |++|+++++|........+..+...+.
T Consensus 267 ~~~-l~~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~-Ga~v~ev~~p~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (521)
T 3a1k_A 267 LST-LDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEI-GCTVEEVNIPWHLHAFHIWNVIATDGGAYQMLDGN 344 (521)
T ss_dssp STT-TTSCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGGG-TCEEEEECCTHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hhh-hccCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHHC-CCEEEEeCCCchHhHHHHHHHHHHHHHHhhhhhcc
Confidence 111 123478999999887553 37999999999999999998 999999999866544333433332221
Q ss_pred --------------HHHHHHHHHhcCCCCCCHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHHHhccCCEEEcc
Q 012667 300 --------------STSLSSYLQKINCSDQGWDARVALSVY----GSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVP 361 (458)
Q Consensus 300 --------------~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~s~~~y~~a~~~r~~~~~~~~~~f~~~D~ll~P 361 (458)
...+..+... +.+.+.+.++.++..+ ..++..+|.++++.|+++++.++++|+++|+||+|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~P 423 (521)
T 3a1k_A 345 GYGMNAEGLYDPELMAHFASRRIQ-HADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQFDVLVMP 423 (521)
T ss_dssp TTCSSSCSCCCHHHHHHHHHHHHH-SGGGSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred ccccchhhhhhHHHHHHHHHHhhh-hhhhcCHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 2222233333 4456889998877655 35677899999999999999999999999999999
Q ss_pred CCCCCcccccchhhhcCcchhhhhhhhhcccccccccCCCeEEEecccCCCCCceEEEEEcCCCChHHHHHHHHHHHH-h
Q 012667 362 TTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA-L 440 (458)
Q Consensus 362 t~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~g~PaisvP~g~~~~glPvGlQlvg~~~~D~~ll~~a~~lE~-~ 440 (458)
|+|.++|++++..... .........++.||.+||++|+|+|+||+|+ .+|||+||||||++|+|+.||++|++||+ .
T Consensus 424 t~p~~a~~~~~~~~~~-~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~d~~LL~~A~~~E~~~ 501 (521)
T 3a1k_A 424 TLPYVASELPAKDVDR-ATFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMMITGRHFDDATVLRVGRAFEKLR 501 (521)
T ss_dssp SCSSCCCBCCCTTCCH-HHHHHHHHTTCTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccccccCch-hhHHHHHHhhhcccccchhcCCCcEEeeccc-CCCCCeeEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 9999999987521100 0011111234568999999999999999999 68999999999999999999999999999 6
Q ss_pred cccc
Q 012667 441 CISE 444 (458)
Q Consensus 441 ~~~~ 444 (458)
.+|.
T Consensus 502 ~~~~ 505 (521)
T 3a1k_A 502 GAFP 505 (521)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6553
No 10
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=1.3e-94 Score=739.50 Aligned_cols=419 Identities=23% Similarity=0.280 Sum_probs=342.3
Q ss_pred CHHHHHHHHHHhhCCCCCCceEEEecCHHHHHHHHHHHHHHHHcCCCCCCCcCcEEEEeeccCCCCccCCCCccccccCC
Q 012667 1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVR 80 (458)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~g~~~~~L~Gipi~vKD~~~v~g~~tt~Gs~~~~~~~ 80 (458)
||+++|++||++.| +.+||++++.++ ++++|++++. .||||||||+|||||+++|++||+||..+.+.
T Consensus 89 ev~~a~l~ri~~~~---~~~na~~~~~~~-a~~~a~~~~~-------~gpL~GvPi~vKD~~~~~G~~tt~Gs~~~~~~- 156 (573)
T 3ppm_A 89 AVFFTYLGKAWEVN---KGTNCVTSYLTD-CETQLSQAPR-------QGLLYGVPVSLKECFSYKGHDSTLGLSLNEGM- 156 (573)
T ss_dssp HHHHHHHHHHHHHH---HHHCCEEEECTT-HHHHHHHCCT-------TCTTTTCEEEEETTBCCBTCCCCTTCGGGTTC-
T ss_pred HHHHHHHHHHHHhC---CccCEEEEECHH-HHHHHHhhhh-------cCCcCCCeEEEEcccCCCCCCcCCcChhhcCC-
Confidence 68999999999998 899999999876 5666665542 38999999999999999999999999887665
Q ss_pred CCCCCHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccceeeccCCCcc
Q 012667 81 PCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV 160 (458)
Q Consensus 81 ~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~a~gtD~gGSi 160 (458)
++++||++|++|+++|||++||||||||+++.++.|+.||+|+||||++++||||||||||+||+|++++|+||||||||
T Consensus 157 ~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~alGtDtgGSI 236 (573)
T 3ppm_A 157 PSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSI 236 (573)
T ss_dssp CBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTT
T ss_pred CCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHHcCCCcEEEecCCCcch
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeecCCCCcccCCCCCCCCCC----CceeccCCCCHHHHHHHHHHHcCCCC--CCCCCCCCCCCccccccc
Q 012667 161 RMPAALCGVVGFKPTFGRIPLSGVLPLNWT----VGMVGILAATVEDALVVYAAINGPLP--SQQPTVSLPKVSFPLLKS 234 (458)
Q Consensus 161 R~PAa~~Gv~G~kPt~g~~s~~G~~p~~~~----ld~~Gpmarsv~Dl~~l~~~l~~~d~--~d~~~~~~p~~~~~~~~~ 234 (458)
|+||+||||||||||+||+|+.|++|.+++ +|++|||||||+|+++++++|.++|+ .|+.. .+.++...
T Consensus 237 RiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~~~~d~~~-----~~~~~~~~ 311 (573)
T 3ppm_A 237 RFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTV-----PPLPFREE 311 (573)
T ss_dssp HHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHHCTTS-----CCCCCCHH
T ss_pred hhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccccccCCCC-----Cccccchh
Confidence 999999999999999999999999998765 89999999999999999999998653 22221 11222211
Q ss_pred -CCCCCCeEEEEeCCCCc-CCCHHHHHHHHHHHHHHHHhcCcEEEEeeCCChHHHHHHH-HHHHHHHHHHHHHHHHHhc-
Q 012667 235 -ATSISAIKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAH-YLTIGSECSTSLSSYLQKI- 310 (458)
Q Consensus 235 -~~~~~~lrIgv~~~~~~-~~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~~~~~~~~~-~~~~~~e~~~~~~~~~~~~- 310 (458)
....+++||||+.++.. .++|+++++++++++.|+++ ||+|+++++|.+......+ ...+..|....+...+...
T Consensus 312 ~~~~~~~lrigv~~~~~~~~~~p~v~~a~~~a~~~L~~~-G~~v~~~~~p~~~~~~~~~~~~~~~~dg~~~~~~~~~~e~ 390 (573)
T 3ppm_A 312 VYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAA-GHTLIPFLPNNIPYALEVLSTGGLFSDGGRSFLQNFKGDF 390 (573)
T ss_dssp HHTCCCCCEEEECSCCSSSCCCHHHHHHHHHHHHHHHHT-TCEEEECCCTTHHHHHHTHHHHHHTTBTTHHHHGGGTTSC
T ss_pred hcccCCCCEEEEEcccCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEecCccHHHHHHHHHHHHHhhhhHHHHHHHhccCc
Confidence 23478999999976543 48999999999999999998 9999999999876644322 2222223222221111100
Q ss_pred ------------------------CCCCCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHhc--cCCEEEccCCC
Q 012667 311 ------------------------NCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFA--KADVIVVPTTG 364 (458)
Q Consensus 311 ------------------------~~~~~~~~~~~~l~~~~~~s~~~y~~a~~~r~~~~~~~~~~f~--~~D~ll~Pt~~ 364 (458)
....+.+.+...+..++..+..+|++.+..|.++++.|.+.|+ ++|+||||+ +
T Consensus 391 ~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt-~ 469 (573)
T 3ppm_A 391 VDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPM-L 469 (573)
T ss_dssp CCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC-C
T ss_pred ccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCC-C
Confidence 0012334444455666778899999999989999999888885 599999999 4
Q ss_pred CCcccccchhhhcCcchhhhhhhhhcccccccccCCCeEEEecccC-----------------------------CCCCc
Q 012667 365 VTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYD-----------------------------TAGLP 415 (458)
Q Consensus 365 ~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~g~PaisvP~g~~-----------------------------~~glP 415 (458)
.++++++... . ...+..||.+||++|+|+++||+|+. .+|+|
T Consensus 470 ~pA~~h~~~~----~-----~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlP 540 (573)
T 3ppm_A 470 GPALDLNTPG----R-----ATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLP 540 (573)
T ss_dssp CSCCBTTCGG----G-----CGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCSSCSHHHHHHHHHTCSCTTCE
T ss_pred CCCcCCcccc----c-----cccccchhhhhHhhCCCeEEEecccccccccccccccccccchhhhhhhhhhhhccCCCc
Confidence 5778775311 0 11235799999999999999999853 37999
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhccccCCCC
Q 012667 416 IGLQFIGKPWSEPTLMHIAFAMQALCISEFRKP 448 (458)
Q Consensus 416 vGlQlvg~~~~D~~ll~~a~~lE~~~~~~~~~p 448 (458)
|||||||++++|++||++|+.+|++++. .|+|
T Consensus 541 VgVQiVGrr~~EEklL~~a~~IE~~l~~-~~~~ 572 (573)
T 3ppm_A 541 VAVQCVALPWQEELCLRFMREVEQLMTP-QKQP 572 (573)
T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHHHCT-TSCC
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHHHhc-ccCC
Confidence 9999999999999999999999999975 4554
No 11
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=22.85 E-value=21 Score=17.99 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=4.5
Q ss_pred CCCCCchH
Q 012667 131 ITGGSSSG 138 (458)
Q Consensus 131 ~~GGSSgG 138 (458)
-||||+++
T Consensus 8 rpg~s~~s 15 (21)
T 3u85_B 8 RPGTTGGG 15 (26)
T ss_pred CCCcccCC
Confidence 36766543
Done!