RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012667
(458 letters)
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 328 bits (844), Expect = e-108
Identities = 156/445 (35%), Positives = 220/445 (49%), Gaps = 23/445 (5%)
Query: 7 IAAVRESSNPPMKMSFFINYNEEDILK--QATESTLRYKKGEPISVLDGVLIAVKDEIDC 64
I A+ N F+ + E L +A + R GEP+ L GV IAVKD ID
Sbjct: 34 IEALNPDLN------AFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKDNIDT 87
Query: 65 SPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARN 124
+ PTT G+K L P DA V RLR GA+++GKTNM E G+S N +G RN
Sbjct: 88 AGLPTTAGSKALEDYVP-PYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRN 146
Query: 125 PYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGV 184
P++ ++ GGSS GSAA VAAGL P+ALG D GGS+R+PAA CG+VG KPT+GR+ GV
Sbjct: 147 PWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGV 206
Query: 185 LPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLA 244
+PL ++ +G LA TV DA ++ I GP P P P V L + +++
Sbjct: 207 VPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVPPALAG--KDLKGLRIG 264
Query: 245 KYDAWFNDC--SDDIRVCCSRAVDKLCERYGWKVVEVTIPN-IEVMRLAHY---LTIGSE 298
D+R AV L E G +VVEV++P + LA Y G
Sbjct: 265 VPKELGGGGPLDPDVRAAFEAAVKAL-EAAGAEVVEVSLPLLSDDYALAAYYLARFDGER 323
Query: 299 CSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHR---NVFAKA 355
+ K G + + + + S Y A R + I R +F +
Sbjct: 324 YGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEV 383
Query: 356 DVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLP 415
DV++ PTT A +I + + +Y L + + N GLPA++VP G+ GLP
Sbjct: 384 DVLLTPTTPTPAPKIGESESDGDDPLEMY--LLDVFTVPANLAGLPAISVPAGFTADGLP 441
Query: 416 IGLQFIGKPWSEPTLMHIAFAMQAL 440
+GLQ IG + + TL+ +A A++
Sbjct: 442 VGLQLIGPAFDDATLLRLAAALEQA 466
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 294 bits (754), Expect = 1e-95
Identities = 155/446 (34%), Positives = 230/446 (51%), Gaps = 34/446 (7%)
Query: 2 VAERFIAAVRESSNPPMKMSFFINYNE-EDILKQATESTLRYKKGEPISVLDGVLIAVKD 60
+ E ++ E++NP + + + E K A + R +KG L GV I++KD
Sbjct: 2 LVEAYLDRA-EAANPKLNAFVTVFFEEALAQAKAADKRRARKEKG----PLHGVPISLKD 56
Query: 61 EIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYG 120
ID PTT G+K + P DA V RLR GA+++GKTNM E G++ N +G
Sbjct: 57 NIDVKGVPTTAGSK-ALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENSAFG 115
Query: 121 VARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIP 180
RNP+D S+ GGSS GSAA VAAGL P+A+G D GGS+R+PAA CG+VG KPT+GR+
Sbjct: 116 PTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVS 175
Query: 181 LSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF-PLLKSATSIS 239
GV+P + ++ VG LA TVEDA ++ I G P+ + P F LK +
Sbjct: 176 RYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPDFAEPLKKSLKGL 235
Query: 240 AIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSEC 299
I + + D +F+ +++ +A L E G +VVEV P+++ +Y+ +E
Sbjct: 236 RIGVPREDFYFS-LDPEVQRAVRKAAAAL-EALGHEVVEVEPPSLKHALPLYYIIAPAEA 293
Query: 300 STSLSSYLQKI------NCSDQGWDARV-----ALSVYGSFSSQEYIKAQKIRNHQMQIH 348
S++LS + D+ R+ ALS +S Y+KAQK+R +
Sbjct: 294 SSNLSDLDELYPRIRDELLGDE-VKRRIELGAYALSAG--YSGAYYLKAQKVRRLLRREF 350
Query: 349 RNVFAKADVIVVPTTGVTAYEIKDDALKTGE----LDYIYGAALVRYQIAGNFLGLPAVT 404
+F + DV++ PTT A + + A LD+ N GLPA++
Sbjct: 351 AGLFEELDVLLSPTTPTPAPRLGEAADSPTVLYNLLDFTANTVPA------NLAGLPAIS 404
Query: 405 VPVGYDTAGLPIGLQFIGKPWSEPTL 430
+P G+ GLP+GLQ IG P + TL
Sbjct: 405 LPAGFSEDGLPVGLQIIGPPGDDETL 430
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 288 bits (741), Expect = 5e-93
Identities = 156/447 (34%), Positives = 231/447 (51%), Gaps = 47/447 (10%)
Query: 23 FINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPC 82
FI EE+ L QA + + GE L G+ IA+KD I TT +K L P
Sbjct: 29 FITVTEEEALAQAKAADAKLAAGE-AGPLAGIPIAIKDNICTKGIRTTCASKILENYVP- 86
Query: 83 TGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 142
DA V +L+ GA+++GKTNM E G+S N +G +NP+D ++ GGSS GSAA
Sbjct: 87 PYDATVVEKLKAAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAA 146
Query: 143 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVE 202
VAAGL P ALG D GGS+R PAA CGVVG KPT+GR+ G++ ++ +G A TVE
Sbjct: 147 VAAGLAPAALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVE 206
Query: 203 DALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFND-CSDDIRVCC 261
DA ++ AI G P + +P + I +K+ +F + +++
Sbjct: 207 DAALLLNAIAGHDPKDSTSADVPVPDY-TAALGKDIKGLKIGVPKEYFGEGLDPEVKEAV 265
Query: 262 SRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY------LQKINCSD- 314
A+ KL E G ++VEV++P+ + A+Y+ +E S++L+ Y + + D
Sbjct: 266 EAAIKKL-EDLGAEIVEVSLPHTKYALPAYYIIAPAEASSNLARYDGVRYGYRAEDAKDL 324
Query: 315 ---------QGWDARV---------ALSV--YGSFSSQEYIKAQKIRNHQMQIHRNVFAK 354
+G+ V LS Y ++ Y+KAQK+R Q F K
Sbjct: 325 EEMYEKTRSEGFGEEVKRRIMLGTYVLSAGYYDAY----YLKAQKVRTLIKQDFEKAFEK 380
Query: 355 ADVIVVPTTGVTAY---EIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDT 411
DVI+ PT TA+ E DD L +Y + + + + N GLPA++VP G+D
Sbjct: 381 VDVILGPTAPTTAFKIGEKTDDPLA------MYLSDI--FTVPANLAGLPAISVPAGFDD 432
Query: 412 AGLPIGLQFIGKPWSEPTLMHIAFAMQ 438
GLP+GLQ IGK + E TL+++A+A +
Sbjct: 433 GGLPVGLQLIGKYFDEETLLNVAYAFE 459
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 265 bits (680), Expect = 4e-84
Identities = 136/445 (30%), Positives = 220/445 (49%), Gaps = 36/445 (8%)
Query: 19 KMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK 78
K++ F+ E LKQA + L G+ IAVKD I TT +K L
Sbjct: 29 KINAFLEVTVEKALKQAKKLDKAILT-----PLAGIPIAVKDNISTKGIVTTCASKILEN 83
Query: 79 VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG 138
P DA + RL+ GA+++GKTNM E G+S +G +NP++ ++ GGSS G
Sbjct: 84 YIP-PYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGG 142
Query: 139 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILA 198
SAA VAA L P +LG D GGS+R PA+ CGVVGFKPT+GR+ G++ ++ +G A
Sbjct: 143 SAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFA 202
Query: 199 ATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIR 258
TVED ++ I+G + +P + + +K+ + + +++
Sbjct: 203 RTVEDIALLLDVISGHDKRDSTSAKVP-DPEFFEELKKDLKGLKVGVVKEFSEEMDKEVQ 261
Query: 259 VCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY--------LQKI 310
A++ L E G ++VEV+ P+++ +Y+ SE S++L+ Y +++
Sbjct: 262 EKFENALEVL-EELGAEIVEVSFPHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEP 320
Query: 311 NC--------SDQGWDARVALS-VYGSFSSQE------YIKAQKIRNHQMQIHRNVFAKA 355
N +G+ V + G+++ Y+KAQK+R + +F +
Sbjct: 321 NSLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEV 380
Query: 356 DVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLP 415
DVIV PT ++I + E+ Y+ + N GLPA++VP G GLP
Sbjct: 381 DVIVSPTAPTLPFKIGEKLDDPLEM-YLSDI----LTVPANLAGLPAISVPCGVKEKGLP 435
Query: 416 IGLQFIGKPWSEPTLMHIAFAMQAL 440
IGLQ IGK + + TL+ +++A +
Sbjct: 436 IGLQIIGKCFDDKTLLQVSYAFEQA 460
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 235 bits (602), Expect = 2e-72
Identities = 142/428 (33%), Positives = 203/428 (47%), Gaps = 15/428 (3%)
Query: 28 EEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDAC 87
E L +A GEP+ L GV AVK+ D + T G+K P T DA
Sbjct: 49 AERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFDVAGLTTLAGSKINRDRPPATRDAT 108
Query: 88 CVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGL 147
V RL GA+LVG NM E G + N HYG RNP+D ++I GGSS GSAA VAAGL
Sbjct: 109 AVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGL 168
Query: 148 CPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVV 207
P LG D GS+R+PA+LCG+ G KPT+GR+ +G P ++ +G A +V D +V
Sbjct: 169 VPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALV 228
Query: 208 YAAINGPLPSQQPTVSLPKVS-FPLLKSATSISAIKLAKYDAWF-NDCSDDIRVCCSRAV 265
Y + GP P P PLL +++A +F + R AV
Sbjct: 229 YDVLQGPDPQDPFQADRPAEPTAPLL--DRGAEGLRIAVLGGYFAQWADPEARA----AV 282
Query: 266 DKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWD--ARVAL 323
D++ + G EV +P R A ++ SE + +L + Q +D +R L
Sbjct: 283 DRVAKALG-ATREVELPEAARARAAAFIITASEGG---NLHLPALRTRPQDFDPASRDRL 338
Query: 324 SVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYI 383
+ Y++AQ+ R Q +F DV++ P T +A I + ++ ++
Sbjct: 339 LAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSAPLIGQETMRIDGVELP 398
Query: 384 YGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCIS 443
A L +F+GLP V VP+ GLPIG+Q I PW E + A A++ ++
Sbjct: 399 VRANLGILTQPISFIGLPVVAVPLRTP-GGLPIGVQLIAAPWREDLALRAAAALEQQGVA 457
Query: 444 EFRKPKVF 451
P VF
Sbjct: 458 AAPVPTVF 465
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 228 bits (583), Expect = 1e-69
Identities = 141/410 (34%), Positives = 194/410 (47%), Gaps = 39/410 (9%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA 110
L GV I +KD I+ + PTT GT L P T DA V RL GA+ +GK NMHEL
Sbjct: 74 LAGVPIVIKDNINTAGMPTTAGTPALLGFVPAT-DAPVVQRLLDAGAVPLGKANMHELAF 132
Query: 111 GTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVV 170
G + N +G RNPYDP++I GGSS G+AA VAA L P LG D GGSVR+PAALCGVV
Sbjct: 133 GITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAALCGVV 192
Query: 171 GFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFP 230
G +PT GR GV+P++ T VG +A +V D ++ A I G P
Sbjct: 193 GLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITGDAALPAPV--------- 243
Query: 231 LLKSATSISAIKLAKYDAWFNDCSD-DIRVCCSRAVDKLCERYGWKVVEVTIPNI----- 284
+++ ++L A F D D D+ A+ KL G VE+ +P +
Sbjct: 244 ------ALAGLRLGVPAAPFWDGLDPDVAAVAEAALAKL-AAAGVTFVELDLPGLHELNE 296
Query: 285 ---------EVMR-LAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEY 334
E + L YL + S + +I D R L S Y
Sbjct: 297 AVGFPIALYEALADLRAYLR-ENGAGVSFEELVARIASPDVRAIFRDLLDP-PQISEDAY 354
Query: 335 IKAQKIRNHQMQ-IHRNVFA--KADVIVVPTTGVTAYEIKDD-ALKTGELDYIYGAALVR 390
A + ++Q +R FA D I+ PTT +TA I DD + A ++R
Sbjct: 355 RAALDVGRPRLQAWYRQAFARHGLDAILFPTTPLTAPPIGDDDTVILNGAAVPTFARVIR 414
Query: 391 YQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQAL 440
+ GLP +++P G GLP+GL+ G S+ L+ I A++ +
Sbjct: 415 NTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLLAIGRALERV 464
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 227 bits (580), Expect = 2e-69
Identities = 134/400 (33%), Positives = 189/400 (47%), Gaps = 15/400 (3%)
Query: 44 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 103
G P+ L GV AVK+ D + T G K + P DA V RL GA+LVG
Sbjct: 58 AGSPLGPLAGVPFAVKNLFDVAGLTTLAGAKINRDLAPAKRDATLVQRLSAAGAVLVGAL 117
Query: 104 NMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 163
NM E G + N HYG RNP+D ++I GGSS GSAA VAAGL P +LG D GS+R+P
Sbjct: 118 NMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVP 177
Query: 164 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVS 223
A+LCGV G KPT+GR+ GV P ++ VG A +VED + Y + GP P
Sbjct: 178 ASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTD 237
Query: 224 LP-KVSFPLLKSATSISAIKLAKYDAWFNDCSD-DIRVCCSRAVDKLCERYGWKVVEVTI 281
P + + PLL IS +++A WF +D + R L V +
Sbjct: 238 RPAEPTVPLL--PAGISGLRIAVLGGWFQQNADPEALAAVGRVAKALGAT-----TIVEL 290
Query: 282 PNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWD--ARVALSVYGSFSSQEYIKAQK 339
P+ E R A ++ SE + +L + Q +D R L + Y +AQ+
Sbjct: 291 PDAERARAAAFVITASEGG---NLHLDALRTRPQDFDPATRDRLLAGALLPASWYAQAQR 347
Query: 340 IRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLG 399
R+ R +F + DV++ P T +A I + + + A L + +F G
Sbjct: 348 FRHWFRDAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFAG 407
Query: 400 LPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 439
LP + P+ LPIG+Q I PW E + A ++
Sbjct: 408 LPVLAAPL-PRPGRLPIGVQLIAAPWREDLCLRAAAVLER 446
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 204 bits (521), Expect = 1e-60
Identities = 137/446 (30%), Positives = 209/446 (46%), Gaps = 52/446 (11%)
Query: 28 EEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDAC 87
E L A S R+++GEP +LDGV +++KD +PT G++ + P DA
Sbjct: 49 AEGALAAARASEERWRRGEPCGLLDGVPVSIKDIFLTRGWPTLRGSRAIDADGPWDVDAP 108
Query: 88 CVMRLRLCGAILVGKTNMHELGAGTSGI--NPHYGVARNPYDPSKITGGSSSGSAAVVAA 145
V RLR GA+L+GKT E G G+ +P YG+ RNP+D GGSS G+AA VA
Sbjct: 109 AVARLREAGAVLLGKTTTPEFG--WKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVAL 166
Query: 146 GLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDAL 205
G+ P+++G DGGGSVR+PA+ CG GFKPTFGR+PL P T+ VG + TV DA
Sbjct: 167 GMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAA 225
Query: 206 VVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKY--DAWFNDCSDDIRVCCSR 263
++ I P + P SF L + +++A Y + D ++ ++
Sbjct: 226 LLLDVIARPDARDWSALPPPTTSF-LDALDRDVRGLRIA-YSPTLGYVDVDPEVAALVAQ 283
Query: 264 AVDKLCERYGWKVVEV------TIPNIEVM------RLAHYLTIGSECSTSLSSYLQKIN 311
AV +L G +V EV + V+ RL L G L L++I
Sbjct: 284 AVQRL-AALGARVEEVDPGFSDPVEAFHVLWFAGAARLLRALPPGQR--ALLDPGLRRI- 339
Query: 312 CSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVF-AKADVIVVPTTGVTAYEI 370
+++G ++S+ +Y+ A +R + F + D+++ PT + A+E
Sbjct: 340 -AERG----------ATYSASDYLDATAVR-AALGARMGAFHERYDLLLTPTLPIPAFEA 387
Query: 371 KDDALKTGELDYIYGAALVR------YQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKP 424
D G+ L + N PA +VP G+ AGLP+GLQ +G
Sbjct: 388 GHDVPP--------GSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPR 439
Query: 425 WSEPTLMHIAFAMQALCISEFRKPKV 450
S+ ++ +A A + P
Sbjct: 440 HSDDLVLRVARAYEQALPWPHGAPAA 465
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 199 bits (508), Expect = 8e-59
Identities = 129/430 (30%), Positives = 202/430 (46%), Gaps = 31/430 (7%)
Query: 21 SFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVR 80
+ FI+ EE +++A S+ R++ G + +LDG+ IA KD D + TT G+ L
Sbjct: 40 AVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDVAGSVTTAGSVVLANAA 99
Query: 81 PCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY--DPSKITGGSSSG 138
P + DA V L G + +G+TNM E G+NPHYG NP D +I GGSSSG
Sbjct: 100 PASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSG 159
Query: 139 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILA 198
SA VAAGL PVA+G D GGSVR+PAA G+VG+K T GR + GV PL ++ +G L
Sbjct: 160 SAVAVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLC 219
Query: 199 ATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIR 258
+V DA+ + AA+ G L + + ++ F+D +R
Sbjct: 220 RSVRDAVWIDAAMRGLTAPDVVRRPLAGLRLVVPETVV-------------FDDAEPGVR 266
Query: 259 VCCSRAVDKLCERYGWKVVEVTIPNI-EVMRL-AHYLTIGSECSTSLSSYLQKINCSDQG 316
AV++L + G V P E++ L A + + + + +L + +
Sbjct: 267 AAFEAAVERL-QAAGALVERQAFPAFQEILDLIARHGWLVTAEAFALHQERLDGPDAAR- 324
Query: 317 WDARVA--LSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEI---- 370
D RV + ++ +YI + R ++ ++ PT A +
Sbjct: 325 MDPRVVKRTRLGRKITASDYIALLEARE-RLIAQVTRELGGALLATPTVAHVAPPLAPLE 383
Query: 371 KDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTL 430
DD +L + +R + GNFL + V++P G AG+P+GL + L
Sbjct: 384 ADD-----DLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERL 438
Query: 431 MHIAFAMQAL 440
+ A A++A+
Sbjct: 439 LRAALAVEAV 448
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 196 bits (499), Expect = 7e-58
Identities = 129/408 (31%), Positives = 192/408 (47%), Gaps = 31/408 (7%)
Query: 41 RYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILV 100
R + G + LDG ++++KD D + PT G+ P DA V RLR GA+++
Sbjct: 36 RRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGADALIVQRLRNAGAVII 95
Query: 101 GKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV 160
GKT+M E G+NPHYG N DP++I GGSSSG+A VA G +A+G D GGSV
Sbjct: 96 GKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSV 155
Query: 161 RMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQ 218
R+PAAL G+VGFKPT RIPL G PL+ ++ +G LA TV D A + G P+P +
Sbjct: 156 RIPAALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLE 215
Query: 219 QPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVE 278
V+ ++ P D D+ ++ L E+ G ++ +
Sbjct: 216 VLPVAGLRIGLP---------------KGYLLADMEPDVAAAFEASLAAL-EKAGARIAD 259
Query: 279 VTIPNIEVMRLAHYLTIGS----ECSTSLSSYLQKINCSDQGWDARVA--LSVYGSFSSQ 332
+ I ++ + RLA IGS E S + +L D D RV LS +
Sbjct: 260 LAIDDL-IARLAEATRIGSIAGIEASHIHADWLAD---LDANVDIRVKRPLSRRIKVPLE 315
Query: 333 EYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQ 392
Y + + R + A D+ +P T + A I + E D + L+R
Sbjct: 316 AYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVEN-LLLRNT 374
Query: 393 IAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQAL 440
N L ++T+P+ A LP GL + S+ L+ A +++ L
Sbjct: 375 QVANQFDLCSITLPMP-GMA-LPAGLMLTARNGSDRRLLAAAASVEKL 420
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 180 bits (458), Expect = 1e-51
Identities = 134/431 (31%), Positives = 202/431 (46%), Gaps = 37/431 (8%)
Query: 23 FINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPC 82
F + + + A + G S L G+ ++VKD D + T G++ L P
Sbjct: 44 FTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVAGQVTRAGSRVLADAPPA 103
Query: 83 TGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY----DPSKITGGSSSG 138
DA V RLR GA+L+G+TNM E G+NPHYG RNP+ +I GGSSSG
Sbjct: 104 AADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSG 163
Query: 139 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILA 198
+A VA G+ ALG D GGS+R+PAALCG+ GFKPT R+PL G +PL+ T+ +G LA
Sbjct: 164 AAVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLA 223
Query: 199 ATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDD-I 257
+V +V A + + + V +A + ++LA D D +
Sbjct: 224 RSVACCALVDAVL-----AGEEPVVP---------AARPLEGLRLAVPTTVVLDGLDATV 269
Query: 258 RVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECS-TSLSSYL---QKINCS 313
RA+ +L G + E+ P E+ LA I ++ ++ SY +
Sbjct: 270 AAAFERALKRL-SAAGAIIEEIAFP--ELAELA---EINAKGGFSAAESYAWHRPLLARH 323
Query: 314 DQGWDARVALSV-YG-SFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIK 371
+D RVA + G S+ +YI R + A+ D +V+PT + I
Sbjct: 324 RDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIA 383
Query: 372 DDALKTGELDYIYGAALV-RYQIAGNFLGLPAVTVPVGYDTAG-LPIGLQFIGKPWSEPT 429
D L+ + + AL+ R NFL A+++P G P+GL G P +
Sbjct: 384 D--LEADDAAFFRTNALLLRNPSLINFLDGCALSLPCH--APGEAPVGLMLAGAPGRDDR 439
Query: 430 LMHIAFAMQAL 440
L+ IA A++A+
Sbjct: 440 LLAIALAVEAV 450
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 178 bits (453), Expect = 2e-50
Identities = 133/459 (28%), Positives = 196/459 (42%), Gaps = 54/459 (11%)
Query: 29 EDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCS-PYPTTGGTKWLHKVRPCTGDAC 87
D A K G+ L G+ + +KD ID + P PTT G+ L RP T DA
Sbjct: 51 PDAEADAAALDAERKAGKVRGPLHGIPVLLKDNIDAADPMPTTAGSLALAGNRP-TRDAF 109
Query: 88 CVMRLRLCGAILVGKTNMHEL-----GAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 142
V RLR GA+++GK N+ E +SG + G+ RNPY + GSSSGS A
Sbjct: 110 LVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAA 169
Query: 143 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVE 202
VAAGL VA+G + GS+ PAA+ G+VG KPT G + G++P++ + G + TV
Sbjct: 170 VAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVA 229
Query: 203 DALVVYAAINGPLPSQQPTVSLPKVSFPLLK--SATSISAIKLAKYDAWFNDCSDDIRVC 260
DA V AI G P+ T S P + + A ++ +L + ++
Sbjct: 230 DAAAVLTAIAGGDPADPATASAPAPAVDYVAALDADALRGARLGVARNYLGY-HPEVDAQ 288
Query: 261 CSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQ------KINCSD 314
RA+ +L + G V++V + A + + E L++YL+ +
Sbjct: 289 FERALAEL-KAAGAVVIDVVDLDDGDWGEAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLA 347
Query: 315 QGWDARVALSV--YGSFSSQEYIKAQKIRNHQMQIHRNVFAKA----------------- 355
A F + + +AQ + + A A
Sbjct: 348 DLIAFNRAQHAREMPYFGQELFEQAQAAPGLDDPAYLDALADAKRLAGPEGIDAALKEHR 407
Query: 356 -DVIVVPTTGVTAYEIKDDALKTGE-LDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAG 413
D +V PTTG A+ I D + A V G P +TVP+G G
Sbjct: 408 LDALVAPTTG-PAWLI--DLINGDSFGGSSSTPAAVA--------GYPHLTVPMGQ-VQG 455
Query: 414 LPIGLQFIGKPWSEPTLMHIAFAM-QALCISEFRKPKVF 451
LP+GL FIG WSE L+ + +A QA + R+ F
Sbjct: 456 LPVGLSFIGAAWSEARLLELGYAYEQA---THARREPRF 491
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 168 bits (427), Expect = 2e-46
Identities = 136/430 (31%), Positives = 185/430 (43%), Gaps = 48/430 (11%)
Query: 28 EEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTG--- 84
EED+L QA R + E + L GV AVKD ID + PTT C
Sbjct: 10 EEDLLAQAAALDARDARPERLP-LYGVPFAVKDNIDVAGLPTTAA---------CPAFAY 59
Query: 85 ----DACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSA 140
DA V LR GAI+VGKTN+ + G G YG RN +DP+ I+GGSSSGSA
Sbjct: 60 TPEEDATVVALLRAAGAIVVGKTNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSA 119
Query: 141 AVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAAT 200
VA GL P ALG D GS R+PAAL +VG KPT G + +GV+P ++ V I A T
Sbjct: 120 VAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALT 179
Query: 201 VEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVC 260
V DA V P + LP + + A +F S
Sbjct: 180 VADAEQVLRIAAAPDARDPYSRPLPAAA-LRRFPPPPRVGVPRAAQLEFF-GDSQAEAA- 236
Query: 261 CSRAVDKLCERYGWKVVEVTI-PNIEVMRLAH--------YLTIGSECSTSLSSYLQKIN 311
+ AV++L E G +VVE+ P +E L + Y +G + +
Sbjct: 237 FAAAVERL-EALGVEVVEIDFAPFLETAALLYEGPWVAERYAAVGEFVEAQPDALDPVV- 294
Query: 312 CSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTG--VTAYE 369
R ++ FS+ + AQ + + A DV++VPT T E
Sbjct: 295 --------RGIITSATRFSAADAFAAQYRLAALRRKAEALLAGVDVLLVPTAPTHPTIEE 346
Query: 370 IKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPT 429
+ D + + L Y N L L AV VP G+ + GLP G+ IG + +
Sbjct: 347 VLADPVGL-------NSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAA 399
Query: 430 LMHIAFAMQA 439
L + +QA
Sbjct: 400 LASLGRRLQA 409
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 162 bits (413), Expect = 1e-45
Identities = 117/403 (29%), Positives = 165/403 (40%), Gaps = 60/403 (14%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGT-KWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 109
L G+ AVKD D + Y T G WL + T A V +L GA VGKT EL
Sbjct: 26 LAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKTQTDELA 85
Query: 110 AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGV 169
+G N HYG NP P ++ GGSSSGSAA VA GL ALG D GGSVR PA+ CG+
Sbjct: 86 FSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGL 145
Query: 170 VGFKPTFGRIPLSGVLPLNWTVGMVGILA------ATVEDALVVYAAINGPLPSQQPTVS 223
G +PT GRI L GV+PL + VG A V + L+ A PL +
Sbjct: 146 YGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLT---QRLL 202
Query: 224 LPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPN 283
+P F LL A +R A+ +L G ++P
Sbjct: 203 IPVDLFALLDPA---------------------VRAALEAALARLRPHLG-PAKPASVPP 240
Query: 284 IEVMRLAHYLTIGSECSTSLSSYLQK--INCSDQGWDARVALSV---------YGSFSSQ 332
+ + Y LQ + W + + G+ +
Sbjct: 241 LSLDEW--YEAF---------RVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTA 289
Query: 333 EYIKAQKIRNHQMQIHRN-VFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRY 391
+ ++A + R + V+++PT A ++ + L+ AL
Sbjct: 290 DQVEAARARRAAFARELAALLGPDAVLLLPTVPGAA-PLRGAPFE--ALEAYRERALRLL 346
Query: 392 QIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIA 434
IAG GLP +++P+ G P GL IG S+ +L+ +A
Sbjct: 347 CIAG-LAGLPQISLPLA-SVDGAPFGLSLIGPRGSDRSLLALA 387
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 165 bits (419), Expect = 1e-45
Identities = 129/428 (30%), Positives = 192/428 (44%), Gaps = 55/428 (12%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHEL-- 108
L G +A+KD + + P G+ L P DA V RL GA +VGK +L
Sbjct: 88 LAGKTVALKDNVAVAGVPMMNGSSTLEGFVPSF-DATVVTRLLDAGATIVGKATCEDLCF 146
Query: 109 --GAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAAL 166
G+ TS P NP DP GGSSSGSAA+VAAG +A+G D GGS+R+P+A
Sbjct: 147 SGGSHTSDPGP----VHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAW 202
Query: 167 CGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGP--LPSQQPTVSL 224
CG+ G KPT G +P +G P+ T+ +G + ATV D ++ I G L +QP
Sbjct: 203 CGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPA--Q 260
Query: 225 PKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCS--RAVDKLCERYGWKVVEVTIP 282
P V + +K+ F + + V + A +L E G V EV+IP
Sbjct: 261 PPVDDYTAALDRGVKGLKIGILREGFGLPNSEPEVDEAVRAAAKRL-EDLGATVEEVSIP 319
Query: 283 NIEVMRLAHYLTIGSECSTSL----SSY---------LQKINCSDQGWDARV-ALSV--- 325
+ + LA + I +E +T+ + Y ++ GW R LS
Sbjct: 320 -LHRLALAIWNPIATEGATAQMMLGNGYGFNWKGLYDTGLLDAFGAGWRERADDLSETVK 378
Query: 326 -------YG--SFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALK 376
YG + + Y KA+ + + K D++V+PTT + A +
Sbjct: 379 LVMLLGQYGLERYHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDAS 438
Query: 377 TGELDYIYGAALVRYQIAGN-----FLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLM 431
E Y+ A ++ N G PA++VP G GLP+GL +G+ + E T++
Sbjct: 439 REE--YVSRA----LEMIANTAPFDVTGHPAMSVPCGL-VDGLPVGLMLVGRHFDEATIL 491
Query: 432 HIAFAMQA 439
A A +A
Sbjct: 492 RAAAAFEA 499
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 155 bits (395), Expect = 2e-42
Identities = 75/190 (39%), Positives = 107/190 (56%), Gaps = 7/190 (3%)
Query: 26 YNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGD 85
++ E A ST R+ KGEP+ LDGV + +K+ I P GT P D
Sbjct: 47 FDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENIATRGVPVPLGTAATDLP-PAAAD 105
Query: 86 ACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAA 145
A RLR GA+++ KT M + G +SG++ +G+ RNP+D + GGSS+G+ A AA
Sbjct: 106 APPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAA 165
Query: 146 GLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMV-GILAATVEDA 204
G P+ LG D GGSVR+PA CG+VG KP+ GRIP+ P G G + TV+DA
Sbjct: 166 GYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPID---P--PYTGRCAGPMTRTVDDA 220
Query: 205 LVVYAAINGP 214
++ + ++ P
Sbjct: 221 ALLMSVLSRP 230
Score = 39.2 bits (92), Expect = 0.004
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 401 PAVTVPVGYDTAGLPIGLQFIGK 423
PA ++ G+ GLPIGLQ +G
Sbjct: 412 PAASINCGFTRDGLPIGLQIVGP 434
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 154 bits (392), Expect = 6e-42
Identities = 124/426 (29%), Positives = 181/426 (42%), Gaps = 36/426 (8%)
Query: 29 EDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACC 88
E+ L QA +G+ L GV + VK +D + + TT G + L K D+
Sbjct: 51 EEALAQADAVDAARARGDDPGPLAGVPVTVKVNVDQAGFATTNGVR-LQKDLIAPADSPV 109
Query: 89 VMRLRLCGAILVGKTNMHELG--AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAG 146
V LR GA+++G+TN T NP +G NP+DPS GGSS G+AA VAAG
Sbjct: 110 VDNLRKAGAVIIGRTNTPAFSYRWFTD--NPLHGRTLNPWDPSLTPGGSSGGAAAAVAAG 167
Query: 147 LCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPL-------SGVLPLNWTVGMVGILAA 199
+ +A G D GGS+R PA CGV G +PT GR+P + +V G LA
Sbjct: 168 IGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQ--GPLAR 225
Query: 200 TVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRV 259
TV D + AA+ P P V P P K A+ + D ++
Sbjct: 226 TVADLRLALAAMAAPDPRDPWWVPAPLEGPPRPKRV----ALCVRPDGL---DVDPEVEA 278
Query: 260 CCSRAVDKLCERYGWKVVEVT-IPNI-EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGW 317
A +L E GW V EV P + E L L +G L++ + D G
Sbjct: 279 ALRDAARRL-EDAGWTVEEVDDTPPLREAAELQERLWLGDGYEALLAAAEAE---GDPG- 333
Query: 318 DARVALSVY----GSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDD 373
A AL Y+ A R + + F ++++P + + D
Sbjct: 334 -ALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDYPLLLMPVSAELPFPDDLD 392
Query: 374 ALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHI 433
++ A L QIA F+GLP ++VP G G+P+G+Q + + E +
Sbjct: 393 RQGAEGFRRVWEAQL--PQIALPFMGLPGLSVPTGL-VGGVPVGVQLVAGRFREDLCLAA 449
Query: 434 AFAMQA 439
A++A
Sbjct: 450 GEAIEA 455
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 153 bits (387), Expect = 2e-41
Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 3/180 (1%)
Query: 32 LKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMR 91
+A + R GE + +L GV IA+KD++D + TT G+ T DA V R
Sbjct: 55 RAEAEAAQQRLDAGERLPLL-GVPIAIKDDVDVAGEVTTYGSA--GHGPAATSDAEVVRR 111
Query: 92 LRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVA 151
LR GA+++GKTN+ EL + +G RNP+DP++ GGSS GSAA VAAGL PVA
Sbjct: 112 LRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVA 171
Query: 152 LGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 211
LG DGGGS+R+P+ CG+ G KP RI L + + G +A +V DA ++ A
Sbjct: 172 LGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDAT 231
Score = 52.6 bits (126), Expect = 2e-07
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 17/127 (13%)
Query: 322 ALSVYGSFSSQEYIKAQKIRNHQMQIH---RNVFAKADVIVVPTTG-----VTAYEIKDD 373
A++ GSF S + A +R ++ + +++F DV+V P T + AY+
Sbjct: 332 AIARLGSFFSDRRMAA--LRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIGAYQ---- 385
Query: 374 ALKTGELDYIYGAA-LVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMH 432
+ G + + V Y N G PA VP +D GLP+ +Q +G+P+ E TL+
Sbjct: 386 --RRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLA 443
Query: 433 IAFAMQA 439
+A +++
Sbjct: 444 LAAQIES 450
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 153 bits (389), Expect = 3e-41
Identities = 118/409 (28%), Positives = 178/409 (43%), Gaps = 33/409 (8%)
Query: 47 PISVLDGVLIAVKDEIDCSP-YPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNM 105
S L G+ + VKD + + PT+ GT L DA V +L+ GA ++GK NM
Sbjct: 133 KKSNLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIA-DQDATIVKQLKEEGAFVLGKANM 191
Query: 106 HELG-----AGTSGINPHYGVARNPYDPSKI-TGGSSSGSAAVVAAGLCPVALGVDGGGS 159
E SG + G NPY P K T GSSSGSA VVAA P+A+G + GS
Sbjct: 192 SEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADFAPLAVGTETTGS 251
Query: 160 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ 219
+ PAA VVG +P+ G + +G++PL T+ G +A TV+DA ++ A+ G
Sbjct: 252 IVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMIGYDEKDV 311
Query: 220 PTVSLPKVSFPLLKSATSISAIKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVE 278
T + SI +K K F+ D D+ R + + K + G + +
Sbjct: 312 MTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVDQQDENRKAVAEKIRKDLQDAGAILTD 371
Query: 279 VTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARV-ALSVYGSFSSQEYIKA 337
N + + T+ E +++ Y Q + V +L +F+ ++
Sbjct: 372 YIQLNNG--GVDNLQTLEYEFKHNVNDYFS------QQKNVPVKSLEEIIAFNKKD--SK 421
Query: 338 QKIRNHQMQIH----RNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQI 393
++I+ Q I + VV T+ A + D L LD ALV
Sbjct: 422 RRIKYGQTLIEASEKSAITKDEFEKVVQTSQENAKKELDRYLVEKGLD-----ALVMINN 476
Query: 394 AGNFL----GLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQ 438
L G P + VP GYD G P+G F+GK + E L +I +A +
Sbjct: 477 EEVLLSAVAGYPELAVPAGYDNNGEPVGAVFVGKQFGEKELFNIGYAYE 525
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 151 bits (383), Expect = 6e-40
Identities = 82/194 (42%), Positives = 99/194 (51%), Gaps = 19/194 (9%)
Query: 28 EEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTG--- 84
E D+L QA R P L GV AVKD ID + PTT C
Sbjct: 49 EADLLAQAAALEARDPAALP---LYGVPFAVKDNIDVAGLPTTAA---------CPAFAY 96
Query: 85 ----DACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSA 140
DA V RLR GAI++GKTN+ + G G YG RN +DP ++GGSSSGSA
Sbjct: 97 TPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSA 156
Query: 141 AVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAAT 200
VA GL ALG D GS R+PAA +VG KPT G + GV+P T+ V + A T
Sbjct: 157 VAVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALT 216
Query: 201 VEDALVVYAAINGP 214
V+DA V A + G
Sbjct: 217 VDDADAVLAVMAGF 230
Score = 42.1 bits (100), Expect = 4e-04
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 351 VFAKADVIVVPTTG--VTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVG 408
V A D ++VPT T E+ D + + L Y N L L A+ VP G
Sbjct: 363 VLAGIDALLVPTAPTHPTIAEVAADPIG-------LNSRLGTYTNFVNLLDLCALAVPAG 415
Query: 409 YDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 439
+ GLP G+ I +++ L +A +QA
Sbjct: 416 FRADGLPFGVTLIAPAFADQALADLAARLQA 446
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 149 bits (377), Expect = 7e-40
Identities = 86/190 (45%), Positives = 109/190 (57%), Gaps = 7/190 (3%)
Query: 29 EDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACC 88
E L +A E+ R G+ + +L GV IAVKD++D + PT GT +V P T D+
Sbjct: 61 EAALAEAAEADRRRAAGDRLPLL-GVPIAVKDDVDVAGVPTAFGTA--GEVPPATADSEV 117
Query: 89 VMRLRLCGAILVGKTNMHELGAG--TSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAG 146
V RLR GA++VGKTN ELG TSG P +G RNP+ GGSS GSAA VAAG
Sbjct: 118 VRRLRAAGAVIVGKTNTCELGQWPFTSG--PAFGHTRNPWSRDHTPGGSSGGSAAAVAAG 175
Query: 147 LCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALV 206
L A+G DG GSVR+PAA +VG KP GRI + + + G LA TV DA +
Sbjct: 176 LVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAAL 235
Query: 207 VYAAINGPLP 216
+ A +G P
Sbjct: 236 LLDAASGNHP 245
Score = 57.8 bits (140), Expect = 5e-09
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 341 RNHQMQIHRNV---FAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAG-- 395
R + R V F DV++ PTT + G D + G A R IA
Sbjct: 365 RAAEAAAQRRVGSIFDIVDVVLAPTTAQPPPRV-------GAFDRLGGWATDRAMIAACP 417
Query: 396 -----NFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 439
N LG P++ VP G+ + GLPIG Q +G SEP L+ +A ++A
Sbjct: 418 YTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLEA 466
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 132 bits (333), Expect = 9e-34
Identities = 66/153 (43%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 28 EEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDAC 87
+ +L +A E +GE L G+ A KD TT G+ P DA
Sbjct: 55 RDALLAEAAEKDAALARGEYRGWLHGMPQAPKDLAPTKGIRTTLGSPIFADQVP-QEDAI 113
Query: 88 CVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGL 147
V R+R GAI +GKTN E G G+ NP YG RNPYDPS+ GGSS G+AA +A +
Sbjct: 114 VVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAALALRM 173
Query: 148 CPVALGVDGGGSVRMPAALCGVVGFKPTFGRIP 180
PVA G D GS+R PAA V GF+P+ GR+P
Sbjct: 174 LPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVP 206
Score = 56.9 bits (138), Expect = 1e-08
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 329 FSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDY---IYG 385
++ + +A IR+ Q +F + D + +PT V ++ E + I G
Sbjct: 358 LTAAQVYEASVIRSAWYQALLRLFERYDFLALPTAQVFPFDA--------EWRWPRAIAG 409
Query: 386 AALVRYQ------IAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 439
A+ Y + GLPA++VPVG++ AGLP+G+Q IG P ++ ++ +A A +
Sbjct: 410 RAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLAHAYEQ 469
Query: 440 L 440
Sbjct: 470 A 470
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 130 bits (329), Expect = 4e-33
Identities = 67/189 (35%), Positives = 96/189 (50%), Gaps = 9/189 (4%)
Query: 35 ATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRL 94
A + +GE L G+ + VK+ + + PTT G L P DA V RL+
Sbjct: 61 ARAADAARARGE-RGPLLGIPVTVKESFNVAGLPTTWGFPDLRDYVP-AEDAVAVARLKA 118
Query: 95 CGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGV 154
GA+++GKTN+ N YG NP+D ++ GGSS GSAA +AAG +++G
Sbjct: 119 AGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGS 178
Query: 155 DGGGSVRMPAALCGVVGFKPTFGRIPLSG-------VLPLNWTVGMVGILAATVEDALVV 207
D GGS+R+PA CGV KPT G +PL G LP + + G +A + D ++
Sbjct: 179 DIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALL 238
Query: 208 YAAINGPLP 216
+ GP P
Sbjct: 239 LDVMAGPDP 247
Score = 44.3 bits (105), Expect = 9e-05
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 329 FSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAY---EIKDDALKTGELD---Y 382
S ++++ A R R FA+ DV++ P T A+ D + ++D Y
Sbjct: 365 LSHRDWLFADAAREELRAAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSY 424
Query: 383 IYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSE 427
Y LV +A GLPA +P+G GLP+G+Q +G P E
Sbjct: 425 PYWDQLVWAGLAT-LPGLPATAIPIGLSATGLPVGVQIVG-PALE 467
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 124 bits (313), Expect = 3e-31
Identities = 106/407 (26%), Positives = 186/407 (45%), Gaps = 56/407 (13%)
Query: 43 KKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGK 102
+K L + +KD S PT +K L +P + +A V +L GA V K
Sbjct: 29 EKNNKDGPLANCVFTIKDNFATSEGPTHASSKSLENFKP-SYNATVVQKLINAGAKPVAK 87
Query: 103 TNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRM 162
+ ELG G +G+ +G+ +NP D SK+ GGSSSGSAA + A+G D G SVR+
Sbjct: 88 VHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKNI-SFAIGSDTGDSVRL 146
Query: 163 PAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 222
PA+ G VGFKP++G I G+ ++ V V DA+++ + G + +V
Sbjct: 147 PASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSV 206
Query: 223 SLPKVSFPLLKSATSISAIKLAKYD--AWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVT 280
+ I+ +K K A+ + C ++ ++ KL + +EV
Sbjct: 207 DV------------KINNVKKTKPKKVAYLD-CFKELEEYVAKKYKKLINILKSENIEVE 253
Query: 281 I--PNIEVMRL--AHYLTIG-SECSTSLS-----SYLQK----------INCSDQGWDAR 320
+ ++++ Y I SE S++L+ ++ + IN +G+
Sbjct: 254 KIKIDEKLLKAIKPVYKIISYSEASSNLANLNGIAFGNREKGSSWEEIMINTRSEGFGKM 313
Query: 321 VALS-VYGSF----SSQE--YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDD 373
V + GS+ +QE ++KA+K+R + ++ K D+++ P A +I ++
Sbjct: 314 VQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDEN 373
Query: 374 ALKT-GELDYIYGAALVRYQIAGNFLGLPAVTVPVG-YDTAGLPIGL 418
K+ +DYI + N +G P++++P+G Y+ LP L
Sbjct: 374 ENKSDNYMDYILTIS--------NLVGNPSLSIPLGKYN--NLPFNL 410
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 119 bits (299), Expect = 1e-29
Identities = 63/149 (42%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
Query: 51 LDGVLIAVKDEIDCSPYPTT-GGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 109
L G+ AVKD D Y T G W T A V+ + GA VGKT M E+
Sbjct: 27 LHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTIMDEMA 86
Query: 110 AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGV 169
+G N HYG NP P ++ GGSSSGSA V A L +LG D GGSVR+PA+ CG+
Sbjct: 87 YSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGI 146
Query: 170 VGFKPTFGRIPLSGVLPLNWTVGMVGILA 198
GF+P+ G + GV+P+ + VG A
Sbjct: 147 FGFRPSHGAVSTVGVIPMAQSFDTVGWFA 175
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 118 bits (298), Expect = 5e-29
Identities = 66/165 (40%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 51 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA 110
GV +KD +D + PT G+ RP D+ + G I +GKT + E G
Sbjct: 74 FSGVPTFIKDNVDVAGLPTMHGSDAWTP-RPAKADSDFARQFLATGLISLGKTQLPEFGF 132
Query: 111 GTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVV 170
S +P G RNP++ G SS GSAA+VAAG+ P+A DGGGS+R+PAA CG+V
Sbjct: 133 SASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLV 192
Query: 171 GFKPTFGRIPLSG---VLPLNWTVGMV--GILAATVEDALVVYAA 210
G KP+ GR+PL LP+N +V G+L TV D Y
Sbjct: 193 GLKPSRGRLPLDPELRRLPVN----IVANGVLTRTVRDTAAFYRE 233
Score = 44.2 bits (105), Expect = 9e-05
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 346 QIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDY-IYGAALVRYQI---AGNFLGLP 401
+++ F DV++ PT T EI D+ L+ Y N G P
Sbjct: 366 RVYARFFGTYDVVLTPTLAHTTPEI---GYLDPTQDFDTVLDRLISYVAFTPLQNATGEP 422
Query: 402 AVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 439
A+++P+G + GLP+G+ F E TL+ +A+ ++
Sbjct: 423 AISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEE 460
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 112 bits (280), Expect = 2e-26
Identities = 108/415 (26%), Positives = 181/415 (43%), Gaps = 48/415 (11%)
Query: 49 SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHEL 108
S L G+ + +KD I PT+ GT L K DA V L+ GA+++GKTNM E
Sbjct: 228 SALYGMPVLLKDNIGTKELPTSAGTVAL-KDWVIGKDATIVENLKANGALILGKTNMSEW 286
Query: 109 GAGT-----SGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 163
AG +G + G ++NPY + GSSSGSA + +A+G + GS+ P
Sbjct: 287 AAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAIAIGTETNGSIITP 346
Query: 164 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDA-LVVYAAINGPLPSQQPTV 222
A+ VG+KP+ G + G++PL+ G L TV DA L A N T
Sbjct: 347 ASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTNTTSNPPLSTD 406
Query: 223 SLPKVSFPLL---KSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVE- 278
+L LL +S + IK K D ++ G ++E
Sbjct: 407 ALKGKRIGLLADGESNEETAVIKKIKLD---------------------LQKAGATIIEG 445
Query: 279 VTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQ 338
+ + E + + ++ L+ +LQ + ++ + + + +Y +++
Sbjct: 446 IAVGEFEQKDTDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQSE 505
Query: 339 KIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIY-----GAALVRYQI 393
+++ Q I + +AD + + E+ D L+ +LD + G+ + I
Sbjct: 506 LVKSQQSTITKQ---QADNLASNLIQSSQNEL-DSVLQKDKLDAVVTIGMGGSVMFLAPI 561
Query: 394 AGNFLGLPAVTVPVGYDT-AGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRK 447
AGN P +T+P GYD + PI L FI S+ L+++ +A + S+ RK
Sbjct: 562 AGN----PELTIPAGYDEESNQPISLTFITARNSDKILLNMGYAYEQ--QSKNRK 610
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 110 bits (276), Expect = 3e-26
Identities = 62/181 (34%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Query: 43 KKGEPISVLDGVLIAVKDEIDCSPY-PTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVG 101
K L G+ + +KD I+ + T+ GT L + + DA V +LR GA+++G
Sbjct: 72 KIKGVRGPLHGIPVLLKDNIETNDSMHTSAGTIALEQHIS-SEDAFLVTKLREAGAVILG 130
Query: 102 KTNMHELGAGTS-----GINPHYGVARNPYDPSKIT---GGSSSGSAAVVAAGLCPVALG 153
K NM EL S G + G NPY + GGSS+GSA VAA V++G
Sbjct: 131 KANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVVSVG 190
Query: 154 VDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 213
+ GS+ PA VVG KPT G I G++P ++ G A TV DA ++ ++ G
Sbjct: 191 TETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGSLTG 250
Query: 214 P 214
Sbjct: 251 V 251
Score = 53.3 bits (128), Expect = 2e-07
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 372 DDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLM 431
D AL+ LD I + + I G P++ +P GY G P G+ +SE TL+
Sbjct: 414 DFALEKYNLDAILFPSYIGSTICAK-AGYPSIAIPAGYMEGGRPFGITLASTAFSEGTLI 472
Query: 432 HIAFAM-QALCISEFRKP 448
+A+A QA ++ RK
Sbjct: 473 KLAYAFEQA---TKHRKI 487
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 100 bits (250), Expect = 9e-23
Identities = 103/414 (24%), Positives = 172/414 (41%), Gaps = 60/414 (14%)
Query: 68 PTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYD 127
+T G++ L K T V RL G I++G++N E G + +G P+D
Sbjct: 81 LSTSGSR-LFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFD 139
Query: 128 PSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPL 187
S+ GGSS G+AA+V++G+ +A DGGGS+R+PA+ G++G KP+ GRIP+
Sbjct: 140 NSRNAGGSSGGAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPGSYR 199
Query: 188 NWTVGMVGI-LAATVEDA--LVVY---AAINGPLPSQQPTVSLPKVSFPLLKSATSISAI 241
W V L +V D L+ Y + P P T+S + L + +
Sbjct: 200 GWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFP--LATLSKESLFQSLQRP------L 251
Query: 242 KLAKY-DAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVT---IPNIEVMRLAHYLTIG 296
K+A Y + + S D +AV L E+ G +VVE+ + EVMR Y +
Sbjct: 252 KIAFYQRSPDGSPVSLDAAKALKQAVTFLREQ-GHEVVELEEFPLDMTEVMR--SYYIMN 308
Query: 297 S--------ECSTSLSSYLQKINCSDQGWDARVALSVYGS---FSSQEYIKAQKIRNHQM 345
S + +L + K + W ++Y S ++ Y + + +
Sbjct: 309 SVETAAMFDDIEDALGRPMTKDDMETMTW------AIYQSGQDIPAKRYSQVLQKWDTYS 362
Query: 346 QIHRNVFAKADVIVVPTTGVTA---------YEIKDDALKTGE------LDYIY-----G 385
+ D+++ TT A ++ + + + +
Sbjct: 363 ATMASFHETYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKS 422
Query: 386 AALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 439
A+ Y N G PA+++P GLP+G+Q I E L+ IA +A
Sbjct: 423 LAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDLLLGIAEQFEA 476
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 83.7 bits (207), Expect = 3e-17
Identities = 72/214 (33%), Positives = 97/214 (45%), Gaps = 21/214 (9%)
Query: 30 DILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGT---KWLHKVRPCTGDA 86
D LK+A S R +GE + LDG+ KD G+ K L R DA
Sbjct: 55 DALKEAEASDARRARGETLGPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQR----DA 110
Query: 87 CCVMRLRLCGAILVGKTNMHELGAGTSGINP-HYGVARNPYDPSKITG----GSSSGSAA 141
+ RLR GAI +GKTNM + G G+ YG A +PY+ + +T GSS+G+
Sbjct: 111 FTIERLRAAGAICLGKTNMPPMANG--GMQRGVYGRAESPYNAAYLTAPFASGSSNGAGT 168
Query: 142 VVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATV 201
AA L + S R PA+ G+ + P+ G I + G PL T+ +V A T+
Sbjct: 169 ATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTM 228
Query: 202 EDALVVYAAI-------NGPLPSQQPTVSLPKVS 228
D L V I G L QP V +PK S
Sbjct: 229 ADLLEVLDVIVADDPDTRGDLWRLQPWVPIPKAS 262
Score = 40.5 bits (95), Expect = 0.002
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 398 LGLPAVTVPVGY--DTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 439
LG+P VTVP+G D G+P+GL F G+ + + L+ A A +A
Sbjct: 510 LGVPTVTVPMGVMADI-GMPVGLTFAGRAYDDNALLRFAAAFEA 552
>gnl|CDD|182208 PRK10046, dpiA, two-component response regulator DpiA; Provisional.
Length = 225
Score = 32.3 bits (73), Expect = 0.42
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 33/114 (28%)
Query: 359 VVPTTGVTAYEIKDDALKTGELDYI--------YGAALVRYQIAGNFL------------ 398
VV TT + E +A++ G DY+ G L R++ + L
Sbjct: 81 VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQID 140
Query: 399 --------GLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAM-QALCIS 443
G P +P G D P+ L + K + EP + H A + QAL IS
Sbjct: 141 EMFNAYARGEPKDELPTGID----PLTLNAVRKLFKEPGVQHTAETVAQALTIS 190
>gnl|CDD|200086 TIGR01225, hutH, histidine ammonia-lyase. This enzyme deaminates
histidine to urocanic acid, the first step in histidine
degradation. It is closely related to phenylalanine
ammonia-lyase [Energy metabolism, Amino acids and
amines].
Length = 506
Score = 30.8 bits (70), Expect = 1.7
Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 26/134 (19%)
Query: 93 RLCGAILVGKTNMHELGAGTSGINPHYGVAR----------NPYDPSKITGGSSSGSAAV 142
+ AI+ + N L G SG+ V +P P K GS S +
Sbjct: 92 EVVRAIMALRLN--SLAKGYSGVRAE--VLDQLIALLNAGVHPVVPEK---GSVGASGDL 144
Query: 143 VAAGLCPVALGVDGGGSV-----RMPAA-LCGVVGFKPTFGRIPLSGVLPLNWTVGMVGI 196
A L +AL + G G RMPAA G +P G+ +N T M +
Sbjct: 145 --APLAHMALVLMGEGKAFFKGERMPAAEALAAAGLEPVTLA-AKEGLALINGTQAMTAL 201
Query: 197 LAATVEDALVVYAA 210
+ DA + A
Sbjct: 202 ALLALFDAEDLLRA 215
>gnl|CDD|215106 PLN00212, PLN00212, glutelin; Provisional.
Length = 493
Score = 30.2 bits (68), Expect = 2.5
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 324 SVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPT 362
+ F ++ ++QK R+ +IH+ F + DV+ +P
Sbjct: 126 QQFQQFLTEGQSQSQKFRDEHQKIHQ--FRQGDVVALPA 162
>gnl|CDD|224753 COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic
component [Inorganic ion transport and metabolism].
Length = 299
Score = 29.7 bits (67), Expect = 3.4
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 129 SKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLN 188
+ TGGSSS A VVA G V LG G+ A V P G
Sbjct: 157 ATYTGGSSSVVAKVVAGGEAAVGLGNLYYGAYAKDKAKGAPVEVV-----YPEEGTG--- 208
Query: 189 WTVGMVGILAAT 200
V +L
Sbjct: 209 VNPSGVALLKKA 220
>gnl|CDD|203238 pfam05351, GMP_PDE_delta, GMP-PDE, delta subunit. GMP-PDE delta
subunit was originally identified as a fourth subunit of
rod-specific cGMP phosphodiesterase (PDE)(EC:3.1.4.35).
The precise function of PDE delta subunit in the rod
specific GMP-PDE complex is unclear. In addition, PDE
delta subunit is not confined to photoreceptor cells but
is widely distributed in different tissues. PDE delta
subunit is thought to be a specific soluble transport
factor for certain prenylated proteins and Arl2-GTP a
regulator of PDE-mediated transport.
Length = 156
Score = 28.8 bits (65), Expect = 3.5
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 363 TGVTAYEI-KDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPI 416
TG +EI KD + + + VRYQ FL L V V + P+
Sbjct: 21 TGKVLFEIAKDPSDEDLPEEDPNAGREVRYQFPPKFLKLKTVGATVEFTVGDKPV 75
>gnl|CDD|149922 pfam09015, NgoMIV_restric, NgoMIV restriction enzyme. Members of
this family are prokaryotic DNA restriction enzymes,
exhibiting an alpha/beta structure, with a central
region comprising a mixed six-stranded beta-sheet with
alpha-helices on each side. A long 'arm' protrudes out
of the core of the domain between strands beta2 and
beta3 and is mainly involved in the tetramerisation
interface of the protein. These restriction enzymes
recognise the double-stranded sequence GCCGGC and cleave
after G-1.
Length = 277
Score = 29.4 bits (66), Expect = 3.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 336 KAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAAL 388
+AQ R + + RN + IVV T I AL TG++D +Y AL
Sbjct: 185 RAQNTRTEALNLIRNRKGRLPHIVVVTAEPLPSRIASLALGTGDIDCVYHFAL 237
>gnl|CDD|163682 cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate aldolase-like,
N-terminal catalytic TIM barrel domain. This family of
bacterial enzymes is sequence-similar to
4-hydroxy-2-oxovalerate aldolase (HOA) but its exact
function is unknown. This family includes the
Bacteroides vulgatus Bvu_2661 protein and belongs to the
DRE-TIM metallolyase superfamily. DRE-TIM metallolyases
include 2-isopropylmalate synthase (IPMS),
alpha-isopropylmalate synthase (LeuA),
3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate
synthase, citramalate synthase, 4-hydroxy-2-oxovalerate
aldolase, re-citrate synthase, transcarboxylase 5S,
pyruvate carboxylase, AksA, and FrbC. These members all
share a conserved triose-phosphate isomerase (TIM)
barrel domain consisting of a core beta(8)-alpha(8)
motif with the eight parallel beta strands forming an
enclosed barrel surrounded by eight alpha helices. The
domain has a catalytic center containing a divalent
cation-binding site formed by a cluster of invariant
residues that cap the core of the barrel. In addition,
the catalytic site includes three invariant residues -
an aspartate (D), an arginine (R), and a glutamate (E) -
which is the basis for the domain name "DRE-TIM".
Length = 266
Score = 28.7 bits (65), Expect = 5.4
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV-K 59
+ F+ + S K++ ++Y +DI S SV+D + +A K
Sbjct: 55 FCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASG---------SVVDMIRVAFHK 105
Query: 60 DEID 63
E D
Sbjct: 106 HEFD 109
>gnl|CDD|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the
GT1 family of glycosyltransferases. ExpE7 in
Sinorhizobium meliloti has been shown to be involved in
the biosynthesis of galactoglucans (exopolysaccharide
II).
Length = 359
Score = 28.8 bits (65), Expect = 6.5
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 13/60 (21%)
Query: 323 LSVYGSFSSQEYIKAQKIRNHQMQIH--------RNVFAKADVIVVPTT-----GVTAYE 369
L + G+ E + + +++ + +A+ DV+VVP+ + E
Sbjct: 223 LVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIRE 282
>gnl|CDD|173854 cd08489, PBP2_NikA, The substrate-binding component of an ABC-type
nickel import system contains the type 2 periplasmic
binding fold. This family represents the periplasmic
substrate-binding domain of nickel transport system,
which functions in the import of nickel and in the
control of chemotactic response away from nickel. The
ATP-binding cassette (ABC) type nickel transport system
is comprised of five subunits NikABCDE: the two
pore-forming integral inner membrane proteins NikB and
NikC; the two inner membrane-associated proteins with
ATPase activity NikD and NikE; and the periplasmic
nickel binding NikA, the initial nickel receptor. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA. The DppA binds dipeptides and some
tripeptides and is involved in chemotaxis toward
dipeptides, whereas the OppA binds peptides of a wide
range of lengths (2-35 amino acid residues) and plays a
role in recycling of cell wall peptides, which precludes
any involvement in chemotaxis. Most of other periplasmic
binding proteins are comprised of only two globular
subdomains corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 488
Score = 28.7 bits (65), Expect = 8.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 374 ALKTGELDYIYGAALV 389
AL++GE+D IYGA +
Sbjct: 203 ALQSGEIDLIYGADGI 218
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,766,275
Number of extensions: 2350463
Number of successful extensions: 2217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2133
Number of HSP's successfully gapped: 69
Length of query: 458
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 358
Effective length of database: 6,502,202
Effective search space: 2327788316
Effective search space used: 2327788316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.4 bits)