RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012667
(458 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 268 bits (685), Expect = 2e-85
Identities = 137/462 (29%), Positives = 216/462 (46%), Gaps = 36/462 (7%)
Query: 2 VAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDE 61
V + A+ E ++P + F+ ++E+ +K+A E K + L G+ + +KD
Sbjct: 25 VVKDIYDAI-EETDP--TIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDN 81
Query: 62 IDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGV 121
I + TT +K L ++ + +L A+L+GK NM E G S ++
Sbjct: 82 IITNGLETTCASKMLEG-FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKK 140
Query: 122 ARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPL 181
NP+D + GGSS GSAA VAAGL P++LG D GGS+R PAA CGVVG KPT+GR+
Sbjct: 141 TVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSR 200
Query: 182 SGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAI 241
G++ ++ +G L V+D +V AI+G + + + V F I +
Sbjct: 201 FGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGK-DIKGL 259
Query: 242 KLAKYDAWFND-CSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECS 300
K+A + + +DD++ AV+ L + G V EV++PN + ++Y+ SE S
Sbjct: 260 KVALPKEYLGEGVADDVKEAVQNAVETL-KSLGAVVEEVSLPNTKFGIPSYYVIASSEAS 318
Query: 301 TSLSSY------------------LQKINCSDQGWDARVALSVYGSFSSQEYIKA----- 337
++LS + + G + + + + S Y A
Sbjct: 319 SNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKS 378
Query: 338 QKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNF 397
QK+R VF DV+V PT TA+ + ++ D + A N
Sbjct: 379 QKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEI-----DDPLTMYANDLLTTPVNL 433
Query: 398 LGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 439
GLP ++VP G G PIGLQFIGKP+ E TL +A+ +
Sbjct: 434 AGLPGISVPCGQSN-GRPIGLQFIGKPFDEKTLYRVAYQYET 474
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 228 bits (582), Expect = 2e-70
Identities = 122/429 (28%), Positives = 198/429 (46%), Gaps = 34/429 (7%)
Query: 45 GEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTN 104
E G+ +A+KD I TT ++ L DA V +++ G ++VGK N
Sbjct: 52 VEKKGKFWGIPVAIKDNILTLGMRTTCASRILENYES-VFDATVVKKMKEAGFVVVGKAN 110
Query: 105 MHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPA 164
+ E G+S + RNP+D ++ GGSS GSAA V+AG+ ALG D GGSVR PA
Sbjct: 111 LDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPA 170
Query: 165 ALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSL 224
+LCGVVG+KPT+G + G++ ++ +G + TV DA ++ I+G T
Sbjct: 171 SLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDE-NDATTVN 229
Query: 225 PKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNI 284
KV F + + +D + + A+ L ER G KV V IP+I
Sbjct: 230 RKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLL-ERLGAKVERVKIPHI 288
Query: 285 EVMRLAHYLTIGSECSTSLSSYLQ-----------------KINCSDQGWDARVALSVYG 327
+ +Y+ +E S++L+ + K G + R + +
Sbjct: 289 KYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGT 348
Query: 328 SFSSQEYIKAQ-----KIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDY 382
S Y +A K+R V ++ D I+ PT+ VTA++I + D
Sbjct: 349 FTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIK------DP 402
Query: 383 IYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCI 442
+ + + I N GLPA++VP G+ LP+G+Q IG+ +++ + IA A++
Sbjct: 403 LTYYLMDIFTIPANLAGLPAISVPFGFSN-NLPVGVQVIGRRFADGKVFRIARAIEK--N 459
Query: 443 SEFRKPKVF 451
S + + +F
Sbjct: 460 SPYNENGMF 468
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 172 bits (436), Expect = 5e-49
Identities = 124/480 (25%), Positives = 192/480 (40%), Gaps = 47/480 (9%)
Query: 2 VAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDE 61
+ + ++ + ++ I N D LK+A E + G L G+ + +KD
Sbjct: 26 LTQAYLQRIAALDRTGPRLRAVIELNP-DALKEAAERDRERRDGRLRGPLHGIPLLLKDN 84
Query: 62 IDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGT-----SGIN 116
I+ +P T+ G+ L RP DA V RLR GA+++GKTN+ E SG +
Sbjct: 85 INAAPMATSAGSLALQGFRPD--DAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWS 142
Query: 117 PHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTF 176
G RNPY S GSSSGSA VAA L VA+G + GS+ PAA+ GVVG KPT
Sbjct: 143 ARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTV 202
Query: 177 GRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSAT 236
G + G++P++++ G +A +V DA V AI G + T ++P + +
Sbjct: 203 GLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDYTARL 262
Query: 237 SISAIKLAKYDAWFNDCSDDIRV-CCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTI 295
++ + + R G VV V +PN A +
Sbjct: 263 DPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERTLL 322
Query: 296 GSECSTSLSSYL------------------------QKINCSDQGWDARVALSVYGSFSS 331
E L Y + + +A +
Sbjct: 323 LYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYI 382
Query: 332 QEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRY 391
+ A+++ + + D +V PTTGV +
Sbjct: 383 RARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAW-----------PIRSEGDDFPGES 431
Query: 392 QIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVF 451
A G P++TVP+G GLP+GL F+G WSEP L+ +A+A + + R+P F
Sbjct: 432 YSAAAVAGYPSLTVPMGQ-IDGLPVGLLFMGTAWSEPKLIEMAYAYEQ--RTRARRPPHF 488
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 144 bits (362), Expect = 3e-38
Identities = 96/470 (20%), Positives = 158/470 (33%), Gaps = 79/470 (16%)
Query: 35 ATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRL 94
T+ + + +L GV +++K+ + +T G + D V L+L
Sbjct: 82 LTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPS-ESDCVVVQVLKL 140
Query: 95 CGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGV 154
GA+ TN+ + NP +G NP+ SK GGSS G A++ +G P+ LG
Sbjct: 141 QGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGT 200
Query: 155 DGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNW----TVGMVGILAATVEDALVVYAA 210
D GGS+R P+A CG+ G KPT R+ SG+ + +G +A VE + A
Sbjct: 201 DIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKA 260
Query: 211 INGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCE 270
+ P + ++ + + D + R + E
Sbjct: 261 LLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIET--KQRLE 318
Query: 271 RYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCS--------------DQG 316
G ++ NI L+ G S S+LQ
Sbjct: 319 AAGHTLIPFLPNNIPYA--LEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPS 376
Query: 317 WDARV--------------ALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKA--DVIVV 360
W R+ L+ S+++ K Q Q + DV++
Sbjct: 377 WFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLT 436
Query: 361 PTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGY----------- 409
P G A ++ TG + Y + N L PA VPV
Sbjct: 437 PMLG-PALDLNTPGRATG---------AISYTVLYNCLDFPAGVVPVTTVTAEDDAQMEL 486
Query: 410 ------------------DTAGLPIGLQFIGKPWSEPTLMHIAFAM-QAL 440
++ GLP+ +Q + PW E + + Q +
Sbjct: 487 YKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLM 536
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 137 bits (345), Expect = 9e-37
Identities = 99/401 (24%), Positives = 154/401 (38%), Gaps = 35/401 (8%)
Query: 41 RYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILV 100
+ + + L G+ + +KD ID + PT G++ +P + VM L+ GA ++
Sbjct: 44 KSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDA-PVVMMLKRAGATII 102
Query: 101 GKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV 160
GKT + NP++ GGSSSGSAA V AG+ P+ALG GGSV
Sbjct: 103 GKTTTTAFASR------DPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSV 156
Query: 161 RMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQP 220
PAA CG KP+F +P GV +W + VG+ A ED A+ G
Sbjct: 157 IRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGI 216
Query: 221 TVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVT 280
A ++ F + +A K ER G V +
Sbjct: 217 ---------------VPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAID 261
Query: 281 IPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKI 340
+P + I + ++ + + R +L + +EY +A++I
Sbjct: 262 LPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRI 321
Query: 341 RNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGL 400
+ VF DV++ + TA RY +G
Sbjct: 322 GRRGRRELGEVFEGVDVLLTYSAPGTAPAKALA-----------STGDPRYNRLWTLMGN 370
Query: 401 PAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAM-QAL 440
P V VPV GLPIG+Q I + ++ + A+ + AL
Sbjct: 371 PCVNVPVL-KVGGLPIGVQVIARFGNDAHALATAWFLEDAL 410
>d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's
yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 320
Score = 32.6 bits (74), Expect = 0.081
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 311 NCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQ--IHRNVFAKADVIVVPTTGVTAY 368
N D A++ L Y F ++ KA + N + Q +H N FA+ V+ T Y
Sbjct: 1 NNIDFDSIAKMLLIKYKDFILSKFKKAAPVENIRFQNLVHTNQFAQ-GVLGQSQHLCTVY 59
Query: 369 E---IKDDALKTGELDYIYGAALVRYQIAGNF 397
+ L+T +LD IY + G+
Sbjct: 60 DNPSWHSIVLETLDLDLIYKNVDKEFAKDGHA 91
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria
gonorrhoeae [TaxId: 485]}
Length = 286
Score = 29.5 bits (66), Expect = 0.81
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 336 KAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAAL 388
+AQ R+ + + RN + IVV T T I AL TGE+D +Y AL
Sbjct: 194 RAQNARSEGLNLVRNRKGRLPHIVVVTAEPTPSRISSIALGTGEIDCVYHFAL 246
>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 321
Score = 27.0 bits (60), Expect = 4.6
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 266 DKLCERY-----GWKVVEVTIPNIEV---MRLAHYLTIGSECSTSLSSYLQKINCSDQGW 317
D++C Y +V + N+ V + G C + L +CS GW
Sbjct: 1 DQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLNGVKPLILRDCSVAGW 60
>d1rvxa_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 323
Score = 27.1 bits (60), Expect = 5.4
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 266 DKLCERY-----GWKVVEVTIPNIEV---MRLAHYLTIGSECSTSLSSYLQKINCSDQGW 317
D +C Y V V N+ V + L G C + LQ C+ GW
Sbjct: 1 DTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLKGIAPLQLGKCNIAGW 60
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 317
Score = 26.6 bits (59), Expect = 6.4
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 266 DKLCERY-----GWKVVEVTIPNIEV---MRLAHYLTIGSECSTSLSSYLQKINCSDQGW 317
DK+C Y V +T N+ V L H G C+T+L L C+ +G
Sbjct: 1 DKICIGYQSTNSTETVDTLTETNVPVTHAKELLHTSHNGMLCATNLGHPLILDTCTIEGL 60
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 26.9 bits (58), Expect = 7.0
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 380 LDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPI 416
+Y G L R++ + V P+G+D GLP
Sbjct: 54 KNYTMGDVLARFRRMQGY----EVLHPMGWDAFGLPA 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,772,392
Number of extensions: 85420
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 13
Length of query: 458
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 370
Effective length of database: 1,199,356
Effective search space: 443761720
Effective search space used: 443761720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)