Citrus Sinensis ID: 012668
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | 2.2.26 [Sep-21-2011] | |||||||
| P46032 | 585 | Peptide transporter PTR2 | yes | no | 0.997 | 0.781 | 0.763 | 0.0 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.980 | 0.761 | 0.658 | 1e-176 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.991 | 0.796 | 0.616 | 1e-166 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.989 | 0.794 | 0.606 | 1e-164 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.908 | 0.763 | 0.599 | 1e-154 | |
| Q9LQL2 | 614 | Nitrate transporter 1.5 O | no | no | 0.960 | 0.716 | 0.420 | 1e-107 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.993 | 0.763 | 0.443 | 1e-107 | |
| Q9FNL7 | 582 | Peptide transporter PTR3- | no | no | 0.932 | 0.733 | 0.443 | 1e-103 | |
| Q8GXN2 | 589 | Nitrate transporter 1.8 O | no | no | 0.986 | 0.767 | 0.419 | 1e-102 | |
| Q9SZY4 | 577 | Nitrate transporter 1.4 O | no | no | 0.956 | 0.759 | 0.426 | 1e-101 |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/457 (76%), Positives = 399/457 (87%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
M LTLSAS+PALKPAEC+G CPSATPAQYA+FF GLYLIALGTGGIKPCVSSFGADQF
Sbjct: 127 MSALTLSASVPALKPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQF 186
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTDS ERV+K SFFNWFYFSINIGAL+SSSL+VWIQ+N GWGLGFGIP +FMG AIASF
Sbjct: 187 DDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASF 246
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
F GT LYRFQ+PGGSPITR+ QV+VASFRK +++VP D+TLLYETQDK SAI GSRKIEH
Sbjct: 247 FFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEH 306
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
+D+ + LDKAAV+S+ E KSGD+SN W LCTVTQVEELKILIRMFPIWA+GI+FSAVYAQ
Sbjct: 307 TDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQ 366
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
MST+FV+QG M+ IGSF +PPA+L +FD SVI WVP+YD+ IVP+ARKFTG ++GF+
Sbjct: 367 MSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFT 426
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
E+QRMGIGLF+SVLCM+AAA+VEI RL +A +L LV+ VPIS+ WQIPQYF+LGAAE
Sbjct: 427 EIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAE 486
Query: 361 VCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420
V FIGQLEFFYDQSPDAMRSLCSAL+LLT ALGNYLSS ILT+VTYFTT G+ GWI D
Sbjct: 487 VFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISD 546
Query: 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
NLN GHLDYFFWLLAGLS+ NM +Y A +YKQKKA
Sbjct: 547 NLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQKKA 583
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 618 bits (1594), Expect = e-176, Method: Compositional matrix adjust.
Identities = 303/460 (65%), Positives = 366/460 (79%), Gaps = 11/460 (2%)
Query: 1 MCTLTLSASIPALKPAECVGA---LCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGA 57
M LTLSAS+P LKPA C G LC AT QYAVFF GLYLIALGTGGIKPCVSSFGA
Sbjct: 138 MALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGA 197
Query: 58 DQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAI 117
DQFDDTD ERV+K SFFNWFYFSINIG+ ISS+L+VW+Q+N GWGLGF IP +FMG +I
Sbjct: 198 DQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSI 257
Query: 118 ASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRK 177
ASFF GT LYRFQ+PGGSPITR+CQVLVA++RK L +P D + LYET++K S I GSRK
Sbjct: 258 ASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRK 317
Query: 178 IEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAV 237
I+H+D + LDKAAV+S+ E KSG FSNPW LCTVTQVEE+K LIRMFPIWA+GIV+S +
Sbjct: 318 IQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVL 377
Query: 238 YAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKER 297
Y+Q+STLFV+QG M+ I SF IPPAS FD + V+ +PIYD+ +VP R+FTG +
Sbjct: 378 YSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPK 437
Query: 298 GFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLG 357
G ++LQRMGIGLFLSVL ++AAA+VE RL+LA++ V +SIFWQIPQY L+G
Sbjct: 438 GLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDF--------VAMSIFWQIPQYILMG 489
Query: 358 AAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGW 417
AEV FIG++EFFYD+SPDAMRS+CSAL+LL TA+G+YLSS ILT+V YFT GGK GW
Sbjct: 490 IAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGW 549
Query: 418 IPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
+PD+LNKGHLDYFFWLL L + N+ +Y + K+ +KKA
Sbjct: 550 VPDDLNKGHLDYFFWLLVSLGLVNIPVYALICVKHTKKKA 589
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 283/459 (61%), Positives = 350/459 (76%), Gaps = 5/459 (1%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
M LTLSAS+P LKP C C +Q AVFF LY+IALGTGGIKPCVSSFGADQF
Sbjct: 110 MTLLTLSASVPGLKPGNCNADTC-HPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQF 168
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
D+ D NE++KK SFFNWFYFSIN+GALI+++++VWIQ N GWG GFG+P + M A+ F
Sbjct: 169 DENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFF 228
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
F G+ YR QRPGGSP+TR+ QV+VA+FRK +++VP D +LL+ET D S I+GSRK+ H
Sbjct: 229 FFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVH 288
Query: 181 SDELRCLDKAAVVSDAE-IKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYA 239
+D L+ DKAAV S ++ IK G+ NPW LC+VTQVEELK +I + P+WATGIVF+ VY+
Sbjct: 289 TDNLKFFDKAAVESQSDSIKDGEV-NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYS 347
Query: 240 QMSTLFVEQGMVMDTSIG-SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERG 298
QMST+FV QG MD +G +F IP ASLS FD +SV+FW P+YD+ I+P+ARKFT ERG
Sbjct: 348 QMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERG 407
Query: 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGA 358
F++LQRMGIGL +S+ M A V+E+ RL + DQ + +SIFWQIPQY L+G
Sbjct: 408 FTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQK-QIHMSIFWQIPQYLLIGC 466
Query: 359 AEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWI 418
AEV TFIGQLEFFYDQ+PDAMRSLCSALSL T ALGNYLS+ ++TVV T GK GWI
Sbjct: 467 AEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWI 526
Query: 419 PDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
PDNLN+GHLDYFF+LLA LS N L+Y+ +K+YK KKA
Sbjct: 527 PDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKA 565
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 578 bits (1490), Expect = e-164, Method: Compositional matrix adjust.
Identities = 277/457 (60%), Positives = 347/457 (75%), Gaps = 4/457 (0%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
M LT+SAS+P L P C G C AT Q A+ F LYLIALGTGGIKPCVSSFGADQF
Sbjct: 111 MTLLTISASVPGLTPT-CSGETC-HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQF 168
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTD E+ K SFFNWFYF IN+GA+I+SS++VWIQ N GWG G G+P + M A+ F
Sbjct: 169 DDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFF 228
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
F+G++ YR Q+PGGSP+TRM QV+VAS RK +++P D +LLYE QD S+I GSRK+EH
Sbjct: 229 FAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEH 288
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
+ L DKAAV ++++ K S+ W LCTVTQVEELK LIR+ PIWATGIVF++VY+Q
Sbjct: 289 TKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQ 348
Query: 241 MSTLFVEQGMVMDTSIG-SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGF 299
M T+FV QG +D +G +F IP ASLS FD +SV+FW P+YDK+IVP ARK+TG ERGF
Sbjct: 349 MGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGF 408
Query: 300 SELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAA 359
++LQR+GIGL +S+ M +A ++E+ RL + L ++ ++P++IFWQ+PQYFL+G A
Sbjct: 409 TQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEE-TIPMTIFWQVPQYFLVGCA 467
Query: 360 EVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIP 419
EV TFIGQLEFFYDQ+PDAMRSLCSALSL A GNYLS+F++T+VT T +GG+ GWI
Sbjct: 468 EVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIA 527
Query: 420 DNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 456
NLN GHLDYFFWLLAGLS N L+Y+ AK Y KK
Sbjct: 528 KNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKK 564
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 274/457 (59%), Positives = 336/457 (73%), Gaps = 41/457 (8%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
M LTLSAS+P LKPAEC+G+LCP AT Q V F GLYLIALGTGGIKPCVSSFGADQF
Sbjct: 128 MVALTLSASVPGLKPAECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQF 187
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
D TD +ERV+K SFFNWFYF+INIGA +SS+++VWIQ+N GW LGF IP +FMG A SF
Sbjct: 188 DKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSF 247
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
F GT LYRFQ+P GSPIT +CQVLVA++RK NL+VP DST
Sbjct: 248 FFGTPLYRFQKPRGSPITSVCQVLVAAYRKSNLKVPEDST-------------------- 287
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
DE DA +NPW LCTVTQVEE+KIL+R+ PIWA+GI+FS +++Q
Sbjct: 288 -DE----------GDAN------TNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQ 330
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
+ TLFV+QG M +IG F IPPA+L FD SV+ VPIYD++IVP+ R+FTG +GF+
Sbjct: 331 IYTLFVQQGRCMKRTIGLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFT 390
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
ELQRMGIGLF+SVL ++ AA+VE RL+LAR+L+LV+ VP++IFWQIPQYFL+G A
Sbjct: 391 ELQRMGIGLFVSVLSLTFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAG 450
Query: 361 VCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIP- 419
V F+G++EFFY+QSPD+MRSLCSA +LLTT LGNYLSS I+T+V Y + GK WIP
Sbjct: 451 VFFFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS---GKDCWIPS 507
Query: 420 DNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 456
DN+N GHLDYFFWLL L N+ ++V + KY K
Sbjct: 508 DNINNGHLDYFFWLLVSLGSVNIPVFVFFSVKYTHMK 544
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/449 (42%), Positives = 296/449 (65%), Gaps = 9/449 (2%)
Query: 13 LKPAECVGAL--CPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVK 70
++P C + C S + + +F+F +YLIALG GG +P +++ GADQFD+ E
Sbjct: 135 IRPRGCGDEVTPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYS 194
Query: 71 KGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQ 130
K +FF++FY ++N+G+L S++++ + +D W LGF + F GT YR+
Sbjct: 195 KIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYF 254
Query: 131 RPGGSPITRMCQVLVASFRKWNLEVP---NDSTLLYETQDKASAIEGSRKIEHSDELRCL 187
+P G+P++R CQVLVA+ +K ++E P + +++ K +++ R+I H+DE + L
Sbjct: 255 KPTGNPLSRFCQVLVAATKKSSVEAPLRGREEMYDGDSEGKNASVNTGRRIVHTDEFKFL 314
Query: 188 DKAAVVS--DAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLF 245
DKAA ++ D + K D NPW LC VTQVEE+K ++R+ PIW I++S V+ QM++LF
Sbjct: 315 DKAAYITARDLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQMASLF 374
Query: 246 VEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGK-ERGFSELQR 304
VEQG M+TS+ F IPPAS+SSFD++SV ++ +Y +++ P+A +F +G +EL R
Sbjct: 375 VEQGAAMNTSVSDFKIPPASMSSFDILSVALFIFLYRRVLEPVANRFKKNGSKGITELHR 434
Query: 305 MGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTF 364
MGIGL ++V+ M AA +VE RL+ A + + S +SIFWQ PQY L+GA+EV +
Sbjct: 435 MGIGLVIAVIAMIAAGIVECYRLKYADK-SCTHCDGSSSLSIFWQAPQYSLIGASEVFMY 493
Query: 365 IGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424
+GQLEFF Q+PD ++S SAL +++ ++GN++SS ++T+V +T GWIP NLNK
Sbjct: 494 VGQLEFFNAQTPDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTEDHMPGWIPRNLNK 553
Query: 425 GHLDYFFWLLAGLSIFNMLLYVVCAKKYK 453
GHLD F++LLA L+ ++++Y+ CAK YK
Sbjct: 554 GHLDRFYFLLAALTSIDLVVYIACAKWYK 582
|
Low-affinity proton-dependent bidirectional nitrate transporter. Involved in nitrate loading into xylem and not in nitrate uptake. Not involved in histidine or dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/460 (44%), Positives = 292/460 (63%), Gaps = 5/460 (1%)
Query: 1 MCTLTLSASIPALKPAECVGA-LCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQ 59
M LT+SA IP L+P C G +C A AQ ++ + L L ALG+GGI+PCV +FGADQ
Sbjct: 109 MTLLTISAIIPTLRPPPCKGEEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQ 168
Query: 60 FDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIAS 119
FD++D N+ K ++FNW+YF + L++ +++VWIQDN GWGLG GIP + M ++ +
Sbjct: 169 FDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIA 228
Query: 120 FFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIE 179
F G LYR P GSP TR+ QV VA+FRK L + +D +LLY + + I K+
Sbjct: 229 FVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLT 288
Query: 180 HSDELRCLDKAAVVSDAE-IKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVY 238
H+ + LDKAA+V++ + +K G N W L TV +VEELK +IRM PI A+GI+ Y
Sbjct: 289 HTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAY 348
Query: 239 AQMSTLFVEQGMVMDTSI-GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKER 297
AQ T ++Q M+ + SF IP S+S F ++++ + YD++ V +ARKFTG ER
Sbjct: 349 AQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLER 408
Query: 298 GFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQ-NVSVPISIFWQIPQYFLL 356
G + L RMGIG +S++ A VE+ R +A E L+D+ + VPIS W IPQY L
Sbjct: 409 GITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLH 468
Query: 357 GAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTG 416
G AE IG LEFFYDQ+P++MRS +AL + ++GNY+S+ ++T+V F+ +
Sbjct: 469 GVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSN 528
Query: 417 WIPD-NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455
W+PD NLN+G L+YF+WL+ L N++ Y+ CAK Y K
Sbjct: 529 WLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYK 568
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/440 (44%), Positives = 284/440 (64%), Gaps = 13/440 (2%)
Query: 1 MCTLTLSASIPALKPAECVGAL---CPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGA 57
M LTLS +IP +KP EC C A+ Q AVFF LY +A+GTGG KP +S+ GA
Sbjct: 113 MMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGA 172
Query: 58 DQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAI 117
DQFD D E+ +K SFFNW+ FSI G L +++++V++QDN GW LG+G+P L + +I
Sbjct: 173 DQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISI 232
Query: 118 ASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRK 177
F GT YR + P GSP T+M +V+VASFRK N + +D T +E +G+
Sbjct: 233 TIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFP 292
Query: 178 IEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAV 237
I + LR LD+A+ +K+G ++ W LCT T+VEE K ++RM P+ V S +
Sbjct: 293 IHPTPSLRFLDRAS------LKTGT-NHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMM 345
Query: 238 YAQMSTLFVEQGMVMDTSI-GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKE 296
AQ++TLFV+QG +D + GSF+IPPASLS F +S++ + +YD++ V I RKFTG
Sbjct: 346 LAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNP 405
Query: 297 RGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQN-VSVPISIFWQIPQYFL 355
RG + LQRMGIGL +L M A+V E RL++A + L+ Q V +P++IF +PQ+ L
Sbjct: 406 RGITLLQRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVL 465
Query: 356 LGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKT 415
+G A+ + +LEFFYDQ+P++M+SL ++ S + A+GN++SSF+L+ V+ T G+
Sbjct: 466 MGMADSFLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGR- 524
Query: 416 GWIPDNLNKGHLDYFFWLLA 435
GWI +NLN+ LDY++ A
Sbjct: 525 GWILNNLNESRLDYYYLFFA 544
|
Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXN2|PTR47_ARATH Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/467 (41%), Positives = 305/467 (65%), Gaps = 15/467 (3%)
Query: 1 MCTLTLSASIPALKPAEC--VGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGAD 58
+ L+LS L+P+ C + C + + +F+ +YLIALG GG +P +++FGAD
Sbjct: 114 LMMLSLSTGALLLEPSGCGVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGAD 173
Query: 59 QFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPA--LFMGFA 116
QFD DS E K +FF++FY ++N+G+L S++++ + +D W LGF A F G
Sbjct: 174 QFDAEDSVEGHSKIAFFSYFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLV 233
Query: 117 IASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSR 176
+ F GT YR P SP +R CQVLVA+ RK ++V ++ LY+++ + + G +
Sbjct: 234 L--FLIGTPKYRHFTPRESPWSRFCQVLVAATRKAKIDVHHEELNLYDSETQYT---GDK 288
Query: 177 KIEHSDELRCLDKAAVVS---DAE-IKSGDFSNPWILCTVTQVEELKILIRMFPIWATGI 232
KI H+ R LD+AA+V+ +AE ++SG +PW LC+VTQVEE+K ++R+ PIW I
Sbjct: 289 KILHTKGFRFLDRAAIVTPDDEAEKVESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTI 348
Query: 233 VFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKF 292
++S V+ QM++LFV QG M T+I +F IP +S+SSFD++SV F++ Y + + P+ +
Sbjct: 349 LYSVVFTQMASLFVVQGAAMKTNIKNFRIPASSMSSFDILSVAFFIFAYRRFLDPLFARL 408
Query: 293 TGKER--GFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQI 350
ER G +ELQRMGIGL ++++ M +A +VEI+RL+ + S +SIFWQ+
Sbjct: 409 NKTERNKGLTELQRMGIGLVIAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQV 468
Query: 351 PQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTT 410
PQY L+GA+EV ++GQLEFF Q+P ++S SAL + + +LGNY+SS ++++V +T
Sbjct: 469 PQYMLIGASEVFMYVGQLEFFNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKIST 528
Query: 411 AGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
GWIP+NLNKGHL+ F++LLAGL+ + ++Y++CAK YK K+
Sbjct: 529 TDDVHGWIPENLNKGHLERFYFLLAGLTAADFVVYLICAKWYKYIKS 575
|
Low-affinity nitrate transporter. Involved in nitrate removal from xylem sap. Not involved in oligopeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/464 (42%), Positives = 287/464 (61%), Gaps = 26/464 (5%)
Query: 4 LTLSASIPALKPAECV-GALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDD 62
L ++ +P L+P C G C AT Q + + LYLIALGTGG+K +S FG+DQFDD
Sbjct: 113 LAVATKLPELRPPTCHHGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDD 172
Query: 63 TDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFS 122
D E+ FFN F+F I++G L++ +++V++QD G +GI + M AI F
Sbjct: 173 KDPKEKAHMAFFFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLC 232
Query: 123 GTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSD 182
GT YR+++ GSP+ ++ QV+ A+FRK +E+P LYE EG R IEH+D
Sbjct: 233 GTKRYRYKKSQGSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNP-----EGIR-IEHTD 286
Query: 183 ELRCLDKAAVVSDAEIKSGDFS---------NPWILCTVTQVEELKILIRMFPIWATGIV 233
+ LDKAA+V++ GDF NPW L +VT+VEE+K+++R+ PIWAT I+
Sbjct: 287 QFHLLDKAAIVAE-----GDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTII 341
Query: 234 FSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFT 293
F YAQM T VEQ M +IGSF IP SL+ F V +++ + +YD+ I+P +K+
Sbjct: 342 FWTTYAQMITFSVEQASTMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWK 401
Query: 294 GKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQY 353
GK GFS LQR+ IGL LS M+AAA+VE RL +A+ ++PIS+F +PQ+
Sbjct: 402 GKP-GFSSLQRIAIGLVLSTAGMAAAALVEQKRLSVAKS----SSQKTLPISVFLLVPQF 456
Query: 354 FLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGG 413
FL+GA E + GQL+FF QSP M+++ + L L T +LG ++SSF++++V T+
Sbjct: 457 FLVGAGEAFIYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTST 516
Query: 414 KTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
GW+ DN+N G LDYF+WLL LS N ++Y++CA +K K
Sbjct: 517 DVGWLADNINHGRLDYFYWLLVILSGINFVVYIICALWFKPTKG 560
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| 255561761 | 585 | peptide transporter, putative [Ricinus c | 0.995 | 0.779 | 0.868 | 0.0 | |
| 224111386 | 584 | predicted protein [Populus trichocarpa] | 0.997 | 0.782 | 0.866 | 0.0 | |
| 225424528 | 586 | PREDICTED: peptide transporter PTR2-like | 0.997 | 0.779 | 0.868 | 0.0 | |
| 449463497 | 586 | PREDICTED: peptide transporter PTR2-like | 0.997 | 0.779 | 0.838 | 0.0 | |
| 350536591 | 580 | oligopeptide transporter 1 [Solanum lyco | 0.997 | 0.787 | 0.838 | 0.0 | |
| 356525018 | 584 | PREDICTED: peptide transporter PTR2-like | 0.997 | 0.782 | 0.838 | 0.0 | |
| 356512257 | 584 | PREDICTED: peptide transporter PTR2-like | 0.997 | 0.782 | 0.831 | 0.0 | |
| 31088360 | 584 | peptide transporter 1 [Vicia faba] | 0.995 | 0.780 | 0.842 | 0.0 | |
| 149900503 | 583 | peptide transporter [Hakea actites] | 0.997 | 0.783 | 0.818 | 0.0 | |
| 6635838 | 559 | amino acid/peptide transporter [Prunus d | 0.938 | 0.769 | 0.839 | 0.0 |
| >gi|255561761|ref|XP_002521890.1| peptide transporter, putative [Ricinus communis] gi|223538928|gb|EEF40526.1| peptide transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/456 (86%), Positives = 432/456 (94%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
MCTLTLSAS+PALKP ECVG LCPSA+PAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF
Sbjct: 128 MCTLTLSASVPALKPVECVGPLCPSASPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 187
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTD ERVKKGSFFNWFYFSINIGAL+SSSL+V+IQDNAGWGLGFGIPALFMG AIASF
Sbjct: 188 DDTDRKERVKKGSFFNWFYFSINIGALVSSSLLVYIQDNAGWGLGFGIPALFMGIAIASF 247
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
F+GT LYRFQ+PGGSPITRMCQVLVASF KWNLEVP+DS+LLYETQD SAIEGSRK+EH
Sbjct: 248 FAGTPLYRFQKPGGSPITRMCQVLVASFHKWNLEVPSDSSLLYETQDGQSAIEGSRKMEH 307
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
S+EL+CLDKAAV+S+ E K+GDFSNPW LCTVTQVEELKIL+RMFPIWATGIVFSAVYAQ
Sbjct: 308 SNELKCLDKAAVISETEAKTGDFSNPWRLCTVTQVEELKILVRMFPIWATGIVFSAVYAQ 367
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
MST+FVEQGM+MDT+IGSFTIPPASLS+FDVISVI WVPIYD +IVPIARKFTGKERGFS
Sbjct: 368 MSTMFVEQGMLMDTTIGSFTIPPASLSTFDVISVICWVPIYDAVIVPIARKFTGKERGFS 427
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
ELQRMGIGLF+SVL MSAAA+VEI RL+LA EL LVD++V+VP+SIFWQIPQY L+GAAE
Sbjct: 428 ELQRMGIGLFISVLSMSAAALVEIRRLQLANELGLVDKDVAVPLSIFWQIPQYMLVGAAE 487
Query: 361 VCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420
V TFIGQLEFFY+QSPDAMRSLCSALSLLTT+LGNYLSSFILT+VTYFTT GGK GWIPD
Sbjct: 488 VFTFIGQLEFFYEQSPDAMRSLCSALSLLTTSLGNYLSSFILTMVTYFTTVGGKPGWIPD 547
Query: 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 456
NLN+GHLDYFFWLLAGLS+ NMLLY+VCAKKYK K+
Sbjct: 548 NLNEGHLDYFFWLLAGLSVVNMLLYIVCAKKYKHKR 583
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111386|ref|XP_002315835.1| predicted protein [Populus trichocarpa] gi|222864875|gb|EEF02006.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/457 (86%), Positives = 430/457 (94%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
MC LTLSASIPALKPAECVG+LCP ATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF
Sbjct: 128 MCALTLSASIPALKPAECVGSLCPPATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 187
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTD ERVKKGSFFNWFYFSINIGALISSS +V+IQDNAGWGLGFGIPALFMG AIASF
Sbjct: 188 DDTDPKERVKKGSFFNWFYFSINIGALISSSFLVYIQDNAGWGLGFGIPALFMGIAIASF 247
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
FSGT LYRFQRPGGSPITRMCQVLVASF KWNLEVP DS+LLYETQDK SAIEGSRK+ H
Sbjct: 248 FSGTPLYRFQRPGGSPITRMCQVLVASFHKWNLEVPLDSSLLYETQDKHSAIEGSRKLVH 307
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
SDEL+CLDKAAV+S+AE+KSGDF NPW LCTVTQVEELKILIRMFPIWATGIVFSAVYAQ
Sbjct: 308 SDELKCLDKAAVLSEAEMKSGDFPNPWRLCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 367
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
MST+FVEQGM+MDT+IGSFTIPPASLSSFDVISVI WVPIYD+I+VPIARKFTGKERGFS
Sbjct: 368 MSTMFVEQGMLMDTTIGSFTIPPASLSSFDVISVICWVPIYDRIVVPIARKFTGKERGFS 427
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
+LQRMGIGLF+SVL M+AAA+VEI RL+LA+EL L + V+VPISIFWQIPQY L+GA+E
Sbjct: 428 DLQRMGIGLFISVLSMTAAALVEIKRLQLAKELGLAGEAVAVPISIFWQIPQYMLVGASE 487
Query: 361 VCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420
V TFIGQ+EFFY++SPDAMRSLCSALSLLTT+LGNYLSSFILT+VTYFTT GGK GWIPD
Sbjct: 488 VFTFIGQIEFFYEESPDAMRSLCSALSLLTTSLGNYLSSFILTMVTYFTTTGGKPGWIPD 547
Query: 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
NLN+GHLDYFFWLLAGLS+ NML+YV CA+KYKQK +
Sbjct: 548 NLNEGHLDYFFWLLAGLSVLNMLVYVFCARKYKQKAS 584
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424528|ref|XP_002285274.1| PREDICTED: peptide transporter PTR2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/457 (86%), Positives = 430/457 (94%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
MCTLTLSA++PA KPA+CVG++CP AT AQYAVFFFGLYLIALGTGGIKPCVSSFGADQF
Sbjct: 129 MCTLTLSATVPAFKPADCVGSVCPPATTAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 188
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTD ERVKKGSFFNWFYFSINIGAL+SSS +VWIQDNAGWGLGFGIPALFMG AIASF
Sbjct: 189 DDTDPKERVKKGSFFNWFYFSINIGALVSSSFLVWIQDNAGWGLGFGIPALFMGIAIASF 248
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
FSGT LYRFQ+PGGSPITRMCQVLVASFRKW LEVP DS LLYET DK SAIEGSRK+EH
Sbjct: 249 FSGTPLYRFQKPGGSPITRMCQVLVASFRKWKLEVPKDSNLLYETPDKNSAIEGSRKLEH 308
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
S+EL+CLDKAAV+SDAEIKSGDFSNPW LCTVTQVEELKILIRMFPIWATGIVFSAVYAQ
Sbjct: 309 SNELKCLDKAAVISDAEIKSGDFSNPWNLCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 368
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
MST+FVEQGMVMDT+IGSFTIPPASLS+FDVISVIFWVP+YD+I+VPIARKFTGKERGFS
Sbjct: 369 MSTMFVEQGMVMDTNIGSFTIPPASLSTFDVISVIFWVPVYDRILVPIARKFTGKERGFS 428
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
ELQRMGIGLFLSVLCMSAAA+VEI RL+LA L+LVD++V+VP+SI WQIPQYFLLGAAE
Sbjct: 429 ELQRMGIGLFLSVLCMSAAALVEIKRLQLATALDLVDEDVAVPLSILWQIPQYFLLGAAE 488
Query: 361 VCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420
V TFIGQLEFFYDQSPDAMRSLCSALSLLTT+LGNYLS+FILTVVT TT GKTGWIPD
Sbjct: 489 VFTFIGQLEFFYDQSPDAMRSLCSALSLLTTSLGNYLSAFILTVVTTLTTEDGKTGWIPD 548
Query: 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
NLNKGHLDY+FWLLAGLS N+L+Y++CAK YK+KK
Sbjct: 549 NLNKGHLDYYFWLLAGLSFLNLLVYMICAKIYKRKKG 585
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463497|ref|XP_004149470.1| PREDICTED: peptide transporter PTR2-like [Cucumis sativus] gi|449526938|ref|XP_004170470.1| PREDICTED: peptide transporter PTR2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/457 (83%), Positives = 420/457 (91%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
MCTLTLSAS+PALKPAECVG +CP A+ AQY VFF GLYLIALGTGGIKPCVSSFGADQF
Sbjct: 127 MCTLTLSASVPALKPAECVGFMCPPASAAQYMVFFLGLYLIALGTGGIKPCVSSFGADQF 186
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTD ERVKKGSFFNWFYFSINIGALISSS +VWIQDNAGWGLGFGIPA+FMG AI SF
Sbjct: 187 DDTDPAERVKKGSFFNWFYFSINIGALISSSFLVWIQDNAGWGLGFGIPAVFMGLAIVSF 246
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
FSGT LYRFQ+PGGSPITRMCQVLVASF K NL VP+DS LLYE QDK+SAIEGSRK+EH
Sbjct: 247 FSGTKLYRFQKPGGSPITRMCQVLVASFHKRNLTVPSDSNLLYEVQDKSSAIEGSRKLEH 306
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
SDELRCLDKAAV+SDAE+KSGDFS+PW LCTVTQ+EE KILIRMFPIWATGIVF+AVYAQ
Sbjct: 307 SDELRCLDKAAVISDAELKSGDFSDPWRLCTVTQIEEFKILIRMFPIWATGIVFAAVYAQ 366
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
MSTLFVEQG ++D +IGSF IPPASLS+FDV+SVIFWVP+YD+ IVPIA+KFTGKERGF+
Sbjct: 367 MSTLFVEQGTMLDKTIGSFRIPPASLSTFDVVSVIFWVPVYDRFIVPIAKKFTGKERGFT 426
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
E+QRMGIGLF+SVLCMSAAAVVEI RL LAREL+LV + +VP+SI WQIPQYFLLGAAE
Sbjct: 427 EIQRMGIGLFISVLCMSAAAVVEIKRLELARELDLVHKPEAVPLSILWQIPQYFLLGAAE 486
Query: 361 VCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420
V TFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILT+VTY TT G++GWIPD
Sbjct: 487 VFTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTIVTYLTTRNGQSGWIPD 546
Query: 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
NLN+GHLD FFWLLAGLS N+L+Y VCAK+Y+ KKA
Sbjct: 547 NLNEGHLDLFFWLLAGLSFLNLLVYTVCAKRYRPKKA 583
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350536591|ref|NP_001233998.1| oligopeptide transporter 1 [Solanum lycopersicum] gi|4102839|gb|AAD01600.1| LeOPT1 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/457 (83%), Positives = 420/457 (91%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
MCTLTLSAS+PA KP +CVG++CPSA+PAQYA+FFFGLYLIALGTGGIKPCVSSFGADQF
Sbjct: 123 MCTLTLSASVPAFKPPQCVGSVCPSASPAQYAIFFFGLYLIALGTGGIKPCVSSFGADQF 182
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTD ERVKKGSFFNWFYFSINIGALISSSLIVWIQ+NAGWGLGFGIPA+FMG AIASF
Sbjct: 183 DDTDPKERVKKGSFFNWFYFSINIGALISSSLIVWIQENAGWGLGFGIPAVFMGIAIASF 242
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
F GT LYRFQ+PGGSP+TRMCQVLVA F KWNL VP+DSTLLYET DK+SAIEGSRK+ H
Sbjct: 243 FFGTPLYRFQKPGGSPLTRMCQVLVAVFHKWNLSVPDDSTLLYETPDKSSAIEGSRKLLH 302
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
+DELRCLDKAAVVSD E+ +GD+SN W LCTVTQVEELKILIRMFPIWATGIVFSAVYAQ
Sbjct: 303 TDELRCLDKAAVVSDNELTTGDYSNAWRLCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 362
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
MST+FVEQGMVMDT++GSF IP ASLS+FD ISVI WVP+YDKI+VPIAR+FTG ERGFS
Sbjct: 363 MSTMFVEQGMVMDTAVGSFKIPAASLSTFDTISVIVWVPVYDKILVPIARRFTGIERGFS 422
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
ELQRMGIGLFLS+LCMSAAA+VEI RL+LAR+L LVD+ VSVP+SIFWQIPQYF+LGAAE
Sbjct: 423 ELQRMGIGLFLSMLCMSAAAIVEIRRLQLARDLGLVDEAVSVPLSIFWQIPQYFILGAAE 482
Query: 361 VCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420
+ TFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT TT GGK GWIP+
Sbjct: 483 IFTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTSITTRGGKPGWIPN 542
Query: 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
NLN GHLDYFFWLLA LS FN+++YV + YK KKA
Sbjct: 543 NLNGGHLDYFFWLLAALSFFNLVIYVFLCQMYKSKKA 579
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525018|ref|XP_003531124.1| PREDICTED: peptide transporter PTR2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/457 (83%), Positives = 417/457 (91%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
M TLTLSAS+PALKPAEC+G CP ATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF
Sbjct: 127 MGTLTLSASVPALKPAECLGTACPPATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 186
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTD ER+KKGSFFNWFYFSINIGAL+SS+ IVWIQ+NAGWGLGFGIPALFM AI SF
Sbjct: 187 DDTDPQERIKKGSFFNWFYFSINIGALVSSTFIVWIQENAGWGLGFGIPALFMALAIGSF 246
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
F GT LYRFQ+PGGSPITRMCQV+VAS K NL VP DS LLYET DK+SAIEGSRK+ H
Sbjct: 247 FLGTPLYRFQKPGGSPITRMCQVVVASVWKRNLVVPEDSNLLYETPDKSSAIEGSRKLGH 306
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
SDEL+CLD+AAVVSDAE KSGD+SN W LCTVTQVEELKILIRMFP+WATGIVF+AVYAQ
Sbjct: 307 SDELKCLDRAAVVSDAESKSGDYSNQWRLCTVTQVEELKILIRMFPVWATGIVFAAVYAQ 366
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
MSTLFVEQG +M+T+ GSF IPPASLSSFDVISVIFWVP+YD+IIVPIARKFTGKERGFS
Sbjct: 367 MSTLFVEQGTMMNTNFGSFRIPPASLSSFDVISVIFWVPVYDRIIVPIARKFTGKERGFS 426
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
ELQRMGIGLF+SVLCMSAAA+VEI RL++A+E LVD+ V VP++IFWQIPQYFLLGAAE
Sbjct: 427 ELQRMGIGLFISVLCMSAAAIVEIVRLKVAKEHGLVDEPVPVPLNIFWQIPQYFLLGAAE 486
Query: 361 VCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420
V TF+GQLEFFYDQSPDAMRSLCSALSLLTT+LGNYLSSFILTVVTYFTT GG GWIPD
Sbjct: 487 VFTFVGQLEFFYDQSPDAMRSLCSALSLLTTSLGNYLSSFILTVVTYFTTQGGNPGWIPD 546
Query: 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
NLNKGHLDYFFWLLAGLS N +Y+V AK+YKQKK+
Sbjct: 547 NLNKGHLDYFFWLLAGLSFLNTFVYIVAAKRYKQKKS 583
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512257|ref|XP_003524837.1| PREDICTED: peptide transporter PTR2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/457 (83%), Positives = 417/457 (91%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
M TLTLSAS+PALKPAEC+G CP ATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF
Sbjct: 127 MGTLTLSASVPALKPAECLGPACPPATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 186
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTD ER+KKGSFFNWFYFSINIGAL+SS+ IVWIQ+NAGWGLGFGIPALFM AI SF
Sbjct: 187 DDTDPGERIKKGSFFNWFYFSINIGALVSSTFIVWIQENAGWGLGFGIPALFMALAIGSF 246
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
F GT LYRFQ+PGGSPITRMCQV+VAS RK NL VP DS+LLYET DK+SAIEGSRK+EH
Sbjct: 247 FLGTPLYRFQKPGGSPITRMCQVVVASVRKRNLVVPEDSSLLYETPDKSSAIEGSRKLEH 306
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
SDEL+CLD+AAV S AE KSGD+SN W LCTVTQVEELKILIRMFP+WAT IVF+AVYAQ
Sbjct: 307 SDELKCLDRAAVASAAESKSGDYSNKWRLCTVTQVEELKILIRMFPVWATVIVFAAVYAQ 366
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
MSTLFVEQG +M+T++GSF IPPASLSSFDVISVI WVP+YD+IIVPIARKFTG ERGFS
Sbjct: 367 MSTLFVEQGTMMNTNVGSFKIPPASLSSFDVISVIVWVPVYDRIIVPIARKFTGNERGFS 426
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
ELQRMGIGLF+SVLCMSAAA+VEI RL+LA+E LVD+ V VP++IFWQIPQYFLLGAAE
Sbjct: 427 ELQRMGIGLFISVLCMSAAAIVEIVRLQLAKEHGLVDEPVPVPLNIFWQIPQYFLLGAAE 486
Query: 361 VCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420
V TFIGQLEFFYDQSPDAMRSLCSAL+LLTT+LGNYLSSFILTV+TYFTT GG GWIPD
Sbjct: 487 VFTFIGQLEFFYDQSPDAMRSLCSALALLTTSLGNYLSSFILTVMTYFTTQGGNPGWIPD 546
Query: 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
NLNKGHLDYFFWLLAGLS NM +Y+V AK+YK+KK+
Sbjct: 547 NLNKGHLDYFFWLLAGLSFLNMFVYIVAAKRYKEKKS 583
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|31088360|gb|AAP44102.1| peptide transporter 1 [Vicia faba] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/457 (84%), Positives = 417/457 (91%), Gaps = 1/457 (0%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
M TLTLSASIPALKPAEC+GA+CP ATPAQYAVFF GLYLIALGTGGIKPCVSSFGADQF
Sbjct: 128 MGTLTLSASIPALKPAECLGAVCPPATPAQYAVFFIGLYLIALGTGGIKPCVSSFGADQF 187
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTDS ERVKKGSFFNWFYFSINIGALISSS IVWIQ+NAGWGLGFGIPALFMG AI SF
Sbjct: 188 DDTDSRERVKKGSFFNWFYFSINIGALISSSFIVWIQENAGWGLGFGIPALFMGLAIGSF 247
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
F GT LYRFQ+PGGSP+TRMCQV+ ASFRK NL VP DS+LLYET DK+SAIEGSRK++H
Sbjct: 248 FLGTPLYRFQKPGGSPLTRMCQVVAASFRKRNLTVPEDSSLLYETPDKSSAIEGSRKLQH 307
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
SDELRCLD+AAV+SD E K GD+SN W LCTVTQVEELKILIRMFP+WATGIVFSAVYAQ
Sbjct: 308 SDELRCLDRAAVISDDERKRGDYSNLWRLCTVTQVEELKILIRMFPVWATGIVFSAVYAQ 367
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
MST+FVEQG +MDTS+GSF IP ASLS+FDVISVIFWVP+YD+ IVPIARKFTGKERGFS
Sbjct: 368 MSTMFVEQGTMMDTSVGSFKIPAASLSTFDVISVIFWVPVYDRFIVPIARKFTGKERGFS 427
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
ELQRMGIGLF+SVLCMSAAA+VEI RL+LA+EL+LVD+ V VP++IF QIPQYFLLGAAE
Sbjct: 428 ELQRMGIGLFISVLCMSAAAIVEIKRLQLAKELDLVDKAVPVPLTIFLQIPQYFLLGAAE 487
Query: 361 VCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420
V TF+GQLEFFYDQSPDAMRSLCSALSLLTT+LGNYLSSFILTVV YFTT GG GWIPD
Sbjct: 488 VFTFVGQLEFFYDQSPDAMRSLCSALSLLTTSLGNYLSSFILTVVLYFTTRGGNPGWIPD 547
Query: 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
NLNKGHLDYF LAGLS NM LY+V AK+YK KKA
Sbjct: 548 NLNKGHLDYFSG-LAGLSFLNMFLYIVAAKRYKSKKA 583
|
Source: Vicia faba Species: Vicia faba Genus: Vicia Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|149900503|gb|ABR32183.1| peptide transporter [Hakea actites] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/457 (81%), Positives = 419/457 (91%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
M TLTLSAS+ A KP+ CVG++CP+ATPAQYAVFF GLYLIALGTGGIKPCVSSFGADQF
Sbjct: 126 MGTLTLSASVAAFKPSPCVGSVCPAATPAQYAVFFCGLYLIALGTGGIKPCVSSFGADQF 185
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTD ERV+KGSFFNWFYFSINIGALISSS +VWIQDNAGWGLGFGIP LFMG AI SF
Sbjct: 186 DDTDPVERVQKGSFFNWFYFSINIGALISSSFLVWIQDNAGWGLGFGIPTLFMGVAIISF 245
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
FSGT LYRFQ+PGGSP+ RMCQV VASFRKWNL+VP DS+LL+E DK SAIEGSRK+EH
Sbjct: 246 FSGTPLYRFQKPGGSPLMRMCQVFVASFRKWNLDVPQDSSLLFELPDKTSAIEGSRKLEH 305
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
SDELRCLDKAAVVSD +++ GD +NPW LCTVTQVEELKILIRMFPIWATGIVFSAVYAQ
Sbjct: 306 SDELRCLDKAAVVSDLDVQQGDLTNPWRLCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 365
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
MST+FVEQGMV+DT+IGSFTIPPASLS+FDV+SVI WVP+YD+++VP+ARKFTGKERGFS
Sbjct: 366 MSTMFVEQGMVLDTTIGSFTIPPASLSTFDVLSVIVWVPMYDRLLVPLARKFTGKERGFS 425
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
ELQRMGIGLF+S+L M+AAA+VEI RL++A+ L LVDQNV+VP+SI WQIPQYFL+GA+E
Sbjct: 426 ELQRMGIGLFISILSMTAAAIVEIRRLQIAKSLGLVDQNVAVPMSILWQIPQYFLVGASE 485
Query: 361 VCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420
+ TFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILT+VT TT GGK GWIPD
Sbjct: 486 IFTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTMVTTITTRGGKPGWIPD 545
Query: 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
NLN+GHLDYFFWLLAGLS N+++YV CA +YK KKA
Sbjct: 546 NLNEGHLDYFFWLLAGLSFLNLVIYVFCAARYKCKKA 582
|
Source: Hakea actites Species: Hakea actites Genus: Hakea Family: Proteaceae Order: Proteales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6635838|gb|AAF20002.1|AF213936_1 amino acid/peptide transporter [Prunus dulcis] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/430 (83%), Positives = 393/430 (91%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
MCTLT+SAS+PALKP +CV ++CPSA+PAQY VFFFGLYLIAL TGGIKPCVSSFGADQF
Sbjct: 127 MCTLTISASVPALKPPQCVDSVCPSASPAQYGVFFFGLYLIALRTGGIKPCVSSFGADQF 186
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTDS ERVKKGSFFNWFYFSINIGAL+SS+LIVW+QDNAGWGLGFGIPALFMG AI SF
Sbjct: 187 DDTDSRERVKKGSFFNWFYFSINIGALVSSTLIVWVQDNAGWGLGFGIPALFMGIAIVSF 246
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
FSGT LYRFQ+PGGSP+TRMCQVLVASFRKWNL+VP DS+LLYETQDK SAI+GSRK+EH
Sbjct: 247 FSGTPLYRFQKPGGSPLTRMCQVLVASFRKWNLDVPRDSSLLYETQDKGSAIKGSRKLEH 306
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
SDEL CLDKAAV+S+ E K+GDFSNPW +CTVTQVEELKILIRMFPIWATGIVFSAVYAQ
Sbjct: 307 SDELNCLDKAAVISETETKTGDFSNPWRICTVTQVEELKILIRMFPIWATGIVFSAVYAQ 366
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
M+T+FVEQGM+MDTS+GSFTIPPASLSSFDVISVIFWVPIYD+ IVPIARKFTGKERGFS
Sbjct: 367 MATMFVEQGMMMDTSVGSFTIPPASLSSFDVISVIFWVPIYDRFIVPIARKFTGKERGFS 426
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
ELQRMGIGLFLSVLCMSAAAVVE+ RL+LA EL LVD+ V+VP+SIFWQIPQYFLLGAAE
Sbjct: 427 ELQRMGIGLFLSVLCMSAAAVVEMKRLQLATELGLVDKEVAVPLSIFWQIPQYFLLGAAE 486
Query: 361 VCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420
+ TFIGQLEFFYDQS DAMRSLCSALS +G F +VTYFTT GGK GWIPD
Sbjct: 487 IFTFIGQLEFFYDQSSDAMRSLCSALSASDDFIGKLSELFDSDIVTYFTTQGGKAGWIPD 546
Query: 421 NLNKGHLDYF 430
NLN GHLDYF
Sbjct: 547 NLNDGHLDYF 556
|
Source: Prunus dulcis Species: Prunus dulcis Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.997 | 0.781 | 0.739 | 2.4e-186 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.980 | 0.761 | 0.641 | 4.8e-158 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.989 | 0.794 | 0.593 | 1.7e-146 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.989 | 0.794 | 0.586 | 1.5e-145 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.569 | 0.478 | 0.552 | 1.3e-139 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.993 | 0.763 | 0.436 | 3e-101 | |
| TAIR|locus:2033776 | 614 | NRT1.5 "nitrate transporter 1. | 0.986 | 0.736 | 0.409 | 1.2e-97 | |
| TAIR|locus:2161438 | 582 | PTR3 "peptide transporter 3" [ | 0.969 | 0.762 | 0.431 | 4.7e-96 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.965 | 0.766 | 0.419 | 1.4e-94 | |
| TAIR|locus:2119058 | 589 | NRT1.8 "NITRATE TRANSPORTER 1. | 0.980 | 0.762 | 0.411 | 1e-93 |
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1807 (641.2 bits), Expect = 2.4e-186, P = 2.4e-186
Identities = 338/457 (73%), Positives = 387/457 (84%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
M LTLSAS+PALKPAEC+G CPSATPAQYA+FF GLYLIALGTGGIKPCVSSFGADQF
Sbjct: 127 MSALTLSASVPALKPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQF 186
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTDS ERV+K SFFNWFYFSINIGAL+SSSL+VWIQ+N GWGLGFGIP +FMG AIASF
Sbjct: 187 DDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASF 246
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
F GT LYRFQ+PGGSPITR+ QV+VASFRK +++VP D+TLLYETQDK SAI GSRKIEH
Sbjct: 247 FFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEH 306
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
+D+ + LDKAAV+S+ E KSGD+SN W LCTVTQVEELKILIRMFPIWA+GI+FSAVYAQ
Sbjct: 307 TDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQ 366
Query: 241 MSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFS 300
MST+FV+QG M+ IGSF +PPA+L +FD SVI WVP+YD+ IVP+ARKFTG ++GF+
Sbjct: 367 MSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFT 426
Query: 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAE 360
E+QRMGIGLF+SVLCM+AAA+VEI RL +A +L LV+ VPIS+ WQIPQYF+LGAAE
Sbjct: 427 EIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAE 486
Query: 361 VCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXXGNYLSSFILTVVTYFTTAGGKTGWIPD 420
V FIGQLEFFYDQSPDAMR GNYLSS ILT+VTYFTT G+ GWI D
Sbjct: 487 VFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISD 546
Query: 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
NLN GHLDYFFWLLAGLS+ NM +Y A +YKQKKA
Sbjct: 547 NLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQKKA 583
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1540 (547.2 bits), Expect = 4.8e-158, P = 4.8e-158
Identities = 295/460 (64%), Positives = 355/460 (77%)
Query: 1 MCTLTLSASIPALKPAECVG---ALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGA 57
M LTLSAS+P LKPA C G ALC AT QYAVFF GLYLIALGTGGIKPCVSSFGA
Sbjct: 138 MALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGA 197
Query: 58 DQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAI 117
DQFDDTD ERV+K SFFNWFYFSINIG+ ISS+L+VW+Q+N GWGLGF IP +FMG +I
Sbjct: 198 DQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSI 257
Query: 118 ASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRK 177
ASFF GT LYRFQ+PGGSPITR+CQVLVA++RK L +P D + LYET++K S I GSRK
Sbjct: 258 ASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRK 317
Query: 178 IEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAV 237
I+H+D + LDKAAV+S+ E KSG FSNPW LCTVTQVEE+K LIRMFPIWA+GIV+S +
Sbjct: 318 IQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVL 377
Query: 238 YAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKER 297
Y+Q+STLFV+QG M+ I SF IPPAS FD + V+ +PIYD+ +VP R+FTG +
Sbjct: 378 YSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPK 437
Query: 298 GFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLG 357
G ++LQRMGIGLFLSVL ++AAA+VE RL+LA++ V +SIFWQIPQY L+G
Sbjct: 438 GLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDF--------VAMSIFWQIPQYILMG 489
Query: 358 AAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXXGNYLSSFILTVVTYFTTAGGKTGW 417
AEV FIG++EFFYD+SPDAMR G+YLSS ILT+V YFT GGK GW
Sbjct: 490 IAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGW 549
Query: 418 IPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
+PD+LNKGHLDYFFWLL L + N+ +Y + K+ +KKA
Sbjct: 550 VPDDLNKGHLDYFFWLLVSLGLVNIPVYALICVKHTKKKA 589
|
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| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1431 (508.8 bits), Expect = 1.7e-146, P = 1.7e-146
Identities = 273/460 (59%), Positives = 342/460 (74%)
Query: 1 MCTLTLSASIPALKPAECVGALC-PSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQ 59
M LTLSAS+P LKP C C P+++ Q AVFF LY+IALGTGGIKPCVSSFGADQ
Sbjct: 110 MTLLTLSASVPGLKPGNCNADTCHPNSS--QTAVFFVALYMIALGTGGIKPCVSSFGADQ 167
Query: 60 FDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIAS 119
FD+ D NE++KK SFFNWFYFSIN+GALI+++++VWIQ N GWG GFG+P + M A+
Sbjct: 168 FDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCF 227
Query: 120 FFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIE 179
FF G+ YR QRPGGSP+TR+ QV+VA+FRK +++VP D +LL+ET D S I+GSRK+
Sbjct: 228 FFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLV 287
Query: 180 HSDELRCLDKAAVVSDAE-IKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVY 238
H+D L+ DKAAV S ++ IK G+ NPW LC+VTQVEELK +I + P+WATGIVF+ VY
Sbjct: 288 HTDNLKFFDKAAVESQSDSIKDGEV-NPWRLCSVTQVEELKSIITLLPVWATGIVFATVY 346
Query: 239 AQMSTLFVEQGMVMDTSIG-SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKER 297
+QMST+FV QG MD +G +F IP ASLS FD +SV+FW P+YD+ I+P+ARKFT ER
Sbjct: 347 SQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNER 406
Query: 298 GFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLG 357
GF++LQRMGIGL +S+ M A V+E+ RL + DQ + +SIFWQIPQY L+G
Sbjct: 407 GFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQK-QIHMSIFWQIPQYLLIG 465
Query: 358 AAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXXGNYLSSFILTVVTYFTTAGGKTGW 417
AEV TFIGQLEFFYDQ+PDAMR GNYLS+ ++TVV T GK GW
Sbjct: 466 CAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGW 525
Query: 418 IPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
IPDNLN+GHLDYFF+LLA LS N L+Y+ +K+YK KKA
Sbjct: 526 IPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKA 565
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| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1422 (505.6 bits), Expect = 1.5e-145, P = 1.5e-145
Identities = 268/457 (58%), Positives = 338/457 (73%)
Query: 1 MCTLTLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQF 60
M LT+SAS+P L P C G C AT Q A+ F LYLIALGTGGIKPCVSSFGADQF
Sbjct: 111 MTLLTISASVPGLTPT-CSGETC-HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQF 168
Query: 61 DDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASF 120
DDTD E+ K SFFNWFYF IN+GA+I+SS++VWIQ N GWG G G+P + M A+ F
Sbjct: 169 DDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFF 228
Query: 121 FSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180
F+G++ YR Q+PGGSP+TRM QV+VAS RK +++P D +LLYE QD S+I GSRK+EH
Sbjct: 229 FAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEH 288
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
+ L DKAAV ++++ K S+ W LCTVTQVEELK LIR+ PIWATGIVF++VY+Q
Sbjct: 289 TKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQ 348
Query: 241 MSTLFVEQGMVMDTSIG-SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGF 299
M T+FV QG +D +G +F IP ASLS FD +SV+FW P+YDK+IVP ARK+TG ERGF
Sbjct: 349 MGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGF 408
Query: 300 SELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAA 359
++LQR+GIGL +S+ M +A ++E+ RL + L ++ ++P++IFWQ+PQYFL+G A
Sbjct: 409 TQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEE-TIPMTIFWQVPQYFLVGCA 467
Query: 360 EVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXXGNYLSSFILTVVTYFTTAGGKTGWIP 419
EV TFIGQLEFFYDQ+PDAMR GNYLS+F++T+VT T +GG+ GWI
Sbjct: 468 EVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIA 527
Query: 420 DNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 456
NLN GHLDYFFWLLAGLS N L+Y+ AK Y KK
Sbjct: 528 KNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKK 564
|
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| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-139, Sum P(2) = 1.3e-139
Identities = 147/266 (55%), Positives = 192/266 (72%)
Query: 193 VSDAEIKSGDFS-NPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMV 251
V + GD + NPW LCTVTQVEE+KIL+R+ PIWA+GI+FS +++Q+ TLFV+QG
Sbjct: 282 VPEDSTDEGDANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRC 341
Query: 252 MDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFL 311
M +IG F IPPA+L FD SV+ VPIYD++IVP+ R+FTG +GF+ELQRMGIGLF+
Sbjct: 342 MKRTIGLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFV 401
Query: 312 SVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFF 371
SVL ++ AA+VE RL+LAR+L+LV+ VP++IFWQIPQYFL+G A V F+G++EFF
Sbjct: 402 SVLSLTFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFF 461
Query: 372 YDQSPDAMRXXXXXXXXXXXXXGNYLSSFILTVVTYFTTAGGKTGWIP-DNLNKGHLDYF 430
Y+QSPD+MR GNYLSS I+T+V Y + GK WIP DN+N GHLDYF
Sbjct: 462 YEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS---GKDCWIPSDNINNGHLDYF 518
Query: 431 FWLLAGLSIFNMLLYVVCAKKYKQKK 456
FWLL L N+ ++V + KY K
Sbjct: 519 FWLLVSLGSVNIPVFVFFSVKYTHMK 544
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| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
Identities = 201/460 (43%), Positives = 285/460 (61%)
Query: 1 MCTLTLSASIPALKPAECVGA-LCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQ 59
M LT+SA IP L+P C G +C A AQ ++ + L L ALG+GGI+PCV +FGADQ
Sbjct: 109 MTLLTISAIIPTLRPPPCKGEEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQ 168
Query: 60 FDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIAS 119
FD++D N+ K ++FNW+YF + L++ +++VWIQDN GWGLG GIP + M ++ +
Sbjct: 169 FDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIA 228
Query: 120 FFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIE 179
F G LYR P GSP TR+ QV VA+FRK L + +D +LLY + + I K+
Sbjct: 229 FVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLT 288
Query: 180 HSDELRCLDKAAVVSDAE-IKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVY 238
H+ + LDKAA+V++ + +K G N W L TV +VEELK +IRM PI A+GI+ Y
Sbjct: 289 HTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAY 348
Query: 239 AQMSTLFVEQGMVMDTSI-GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKER 297
AQ T ++Q M+ + SF IP S+S F ++++ + YD++ V +ARKFTG ER
Sbjct: 349 AQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLER 408
Query: 298 GFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQ-NVSVPISIFWQIPQYFLL 356
G + L RMGIG +S++ A VE+ R +A E L+D+ + VPIS W IPQY L
Sbjct: 409 GITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLH 468
Query: 357 GAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXXGNYLSSFILTVVTYFTTAGGKTG 416
G AE IG LEFFYDQ+P++MR GNY+S+ ++T+V F+ +
Sbjct: 469 GVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSN 528
Query: 417 WIPDN-LNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455
W+PDN LN+G L+YF+WL+ L N++ Y+ CAK Y K
Sbjct: 529 WLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYK 568
|
|
| TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 189/461 (40%), Positives = 296/461 (64%)
Query: 1 MCTLTLSASIPALKPAECVGAL--CPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGAD 58
+ +L+LS+ + ++P C + C S + + +F+F +YLIALG GG +P +++ GAD
Sbjct: 123 LSSLSLSSYMFLIRPRGCGDEVTPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGAD 182
Query: 59 QFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIA 118
QFD+ E K +FF++FY ++N+G+L S++++ + +D W LGF +
Sbjct: 183 QFDEEHPKEGYSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLI 242
Query: 119 SFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVP-NDSTLLYE--TQDKASAIEGS 175
F GT YR+ +P G+P++R CQVLVA+ +K ++E P +Y+ ++ K +++
Sbjct: 243 LFLVGTPRYRYFKPTGNPLSRFCQVLVAATKKSSVEAPLRGREEMYDGDSEGKNASVNTG 302
Query: 176 RKIEHSDELRCLDKAAVVS--DAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIV 233
R+I H+DE + LDKAA ++ D + K D NPW LC VTQVEE+K ++R+ PIW I+
Sbjct: 303 RRIVHTDEFKFLDKAAYITARDLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTII 362
Query: 234 FSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFT 293
+S V+ QM++LFVEQG M+TS+ F IPPAS+SSFD++SV ++ +Y +++ P+A +F
Sbjct: 363 YSVVFTQMASLFVEQGAAMNTSVSDFKIPPASMSSFDILSVALFIFLYRRVLEPVANRFK 422
Query: 294 GK-ERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQ 352
+G +EL RMGIGL ++V+ M AA +VE RL+ A + + S +SIFWQ PQ
Sbjct: 423 KNGSKGITELHRMGIGLVIAVIAMIAAGIVECYRLKYA-DKSCTHCDGSSSLSIFWQAPQ 481
Query: 353 YFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXXGNYLSSFILTVVTYFTTAG 412
Y L+GA+EV ++GQLEFF Q+PD ++ GN++SS ++T+V +T
Sbjct: 482 YSLIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTED 541
Query: 413 GKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYK 453
GWIP NLNKGHLD F++LLA L+ ++++Y+ CAK YK
Sbjct: 542 HMPGWIPRNLNKGHLDRFYFLLAALTSIDLVVYIACAKWYK 582
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| TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 197/457 (43%), Positives = 287/457 (62%)
Query: 1 MCTLTLSASIPALKPAECVGAL---CPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGA 57
M LTLS +IP +KP EC C A+ Q AVFF LY +A+GTGG KP +S+ GA
Sbjct: 113 MMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGA 172
Query: 58 DQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAI 117
DQFD D E+ +K SFFNW+ FSI G L +++++V++QDN GW LG+G+P L + +I
Sbjct: 173 DQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISI 232
Query: 118 ASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRK 177
F GT YR + P GSP T+M +V+VASFRK N + +D T +E +G+
Sbjct: 233 TIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFP 292
Query: 178 IEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAV 237
I + LR LD+A+ +K+G ++ W LCT T+VEE K ++RM P+ V S +
Sbjct: 293 IHPTPSLRFLDRAS------LKTGT-NHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMM 345
Query: 238 YAQMSTLFVEQGMVMDTSI-GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKE 296
AQ++TLFV+QG +D + GSF+IPPASLS F +S++ + +YD++ V I RKFTG
Sbjct: 346 LAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNP 405
Query: 297 RGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQN-VSVPISIFWQIPQYFL 355
RG + LQRMGIGL +L M A+V E RL++A + L+ Q V +P++IF +PQ+ L
Sbjct: 406 RGITLLQRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVL 465
Query: 356 LGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXXGNYLSSFILTVVTYFTTAGGKT 415
+G A+ + +LEFFYDQ+P++M+ GN++SSF+L+ V+ T G+
Sbjct: 466 MGMADSFLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGR- 524
Query: 416 GWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452
GWI +NLN+ LDY++ A L++ N +L++V K Y
Sbjct: 525 GWILNNLNESRLDYYYLFFAVLNLVNFVLFLVVVKFY 561
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| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 192/458 (41%), Positives = 279/458 (60%)
Query: 4 LTLSASIPALKPAECV-GALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDD 62
L ++ +P L+P C G C AT Q + + LYLIALGTGG+K +S FG+DQFDD
Sbjct: 113 LAVATKLPELRPPTCHHGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDD 172
Query: 63 TDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFS 122
D E+ FFN F+F I++G L++ +++V++QD G +GI + M AI F
Sbjct: 173 KDPKEKAHMAFFFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLC 232
Query: 123 GTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSD 182
GT YR+++ GSP+ ++ QV+ A+FRK +E+P LYE EG R IEH+D
Sbjct: 233 GTKRYRYKKSQGSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNP-----EGIR-IEHTD 286
Query: 183 ELRCLDKAAVVSDAEIKSG-D---FSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVY 238
+ LDKAA+V++ + + D NPW L +VT+VEE+K+++R+ PIWAT I+F Y
Sbjct: 287 QFHLLDKAAIVAEGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTY 346
Query: 239 AQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERG 298
AQM T VEQ M +IGSF IP SL+ F V +++ + +YD+ I+P +K+ GK G
Sbjct: 347 AQMITFSVEQASTMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKP-G 405
Query: 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGA 358
FS LQR+ IGL LS M+AAA+VE RL +A+ ++PIS+F +PQ+FL+GA
Sbjct: 406 FSSLQRIAIGLVLSTAGMAAAALVEQKRLSVAKS----SSQKTLPISVFLLVPQFFLVGA 461
Query: 359 AEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXXGNYLSSFILTVVTYFTTAGGKTGWI 418
E + GQL+FF QSP M+ G ++SSF++++V T+ GW+
Sbjct: 462 GEAFIYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWL 521
Query: 419 PDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 456
DN+N G LDYF+WLL LS N ++Y++CA +K K
Sbjct: 522 ADNINHGRLDYFYWLLVILSGINFVVYIICALWFKPTK 559
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| TAIR|locus:2119058 NRT1.8 "NITRATE TRANSPORTER 1.8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
Identities = 191/464 (41%), Positives = 296/464 (63%)
Query: 4 LTLSASIPALKPAEC--VGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFD 61
L+LS L+P+ C + C + + +F+ +YLIALG GG +P +++FGADQFD
Sbjct: 117 LSLSTGALLLEPSGCGVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFD 176
Query: 62 DTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPA--LFMGFAIAS 119
DS E K +FF++FY ++N+G+L S++++ + +D W LGF A F G +
Sbjct: 177 AEDSVEGHSKIAFFSYFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVL-- 234
Query: 120 FFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIE 179
F GT YR P SP +R CQVLVA+ RK ++V ++ LY+++ + + G +KI
Sbjct: 235 FLIGTPKYRHFTPRESPWSRFCQVLVAATRKAKIDVHHEELNLYDSETQYT---GDKKIL 291
Query: 180 HSDELRCLDKAAVVS---DAE-IKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFS 235
H+ R LD+AA+V+ +AE ++SG +PW LC+VTQVEE+K ++R+ PIW I++S
Sbjct: 292 HTKGFRFLDRAAIVTPDDEAEKVESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTILYS 351
Query: 236 AVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGK 295
V+ QM++LFV QG M T+I +F IP +S+SSFD++SV F++ Y + + P+ +
Sbjct: 352 VVFTQMASLFVVQGAAMKTNIKNFRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKT 411
Query: 296 ER--GFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQY 353
ER G +ELQRMGIGL ++++ M +A +VEI+RL+ + S +SIFWQ+PQY
Sbjct: 412 ERNKGLTELQRMGIGLVIAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQY 471
Query: 354 FLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXXGNYLSSFILTVVTYFTTAGG 413
L+GA+EV ++GQLEFF Q+P ++ GNY+SS ++++V +T
Sbjct: 472 MLIGASEVFMYVGQLEFFNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDD 531
Query: 414 KTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457
GWIP+NLNKGHL+ F++LLAGL+ + ++Y++CAK YK K+
Sbjct: 532 VHGWIPENLNKGHLERFYFLLAGLTAADFVVYLICAKWYKYIKS 575
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P46032 | PTR2_ARATH | No assigned EC number | 0.7636 | 0.9978 | 0.7811 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pm.C_LG_X000383 | SubName- Full=Putative uncharacterized protein; (584 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 458 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 1e-105 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 6e-30 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 1e-28 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 7e-12 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 3e-08 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 7e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.003 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 317 bits (815), Expect = e-105
Identities = 147/393 (37%), Positives = 214/393 (54%), Gaps = 27/393 (6%)
Query: 3 TLTLSASIPALKPAEC-VGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFD 61
T+ L + I A+ +GA+ PS +P Q A+F+ GLYLIALGTGGIKP VS+FGADQFD
Sbjct: 3 TILLGSIIYAIGHVLLTLGAIPPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQFD 62
Query: 62 DTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFF 121
+T R FF+WFYFSIN G+LI++ + ++Q N G+ LGFG+PA+ M A+ F
Sbjct: 63 ETQDPRRD---GFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVFL 119
Query: 122 SGTSLYRFQ-RPGGSPITRM-CQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIE 179
G+ Y+ + PGGSP T ++ A+ + L++P DS LY +K + S+
Sbjct: 120 LGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWALEKYNKRSISQTKV 179
Query: 180 HSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYA 239
H+ AV+ K F + V L+ ++ M PIWA I+ ++
Sbjct: 180 HTR-------VAVIFIPLPK---FWALF--DQQGSVWLLQAILLMLPIWAFWILPDQMWT 227
Query: 240 QMSTLFVEQGMVMDTSIGS-FTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERG 298
Q++TL V Q MD I F IPPAS SF+ ++V+ +PI D ++ P+ R +RG
Sbjct: 228 QLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLR----LKRG 283
Query: 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGA 358
+ QR G+G+F+ ++ AA+VE R R A L L +VP+ I W +P+ F+ G
Sbjct: 284 LTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLFILWSLPELFISGV 343
Query: 359 AEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTT 391
G LEF D P +M SL + LS
Sbjct: 344 GLA----GALEFAPDALPSSMMSLWTLLSAAAA 372
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 6e-30
Identities = 82/381 (21%), Positives = 137/381 (35%), Gaps = 50/381 (13%)
Query: 34 FFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLI 93
+ GL LI +GTG KP +SS + + D ++ F FY INIG+LI+ +
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIIT 175
Query: 94 VWIQDNAGWGLGFGIPALFM--GFAIASFFSGTSLYRFQRPGGSPITRM--CQVLVASFR 149
+ N GW +GFG+ A+ M G I P +P++ VL
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVV 235
Query: 150 KWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWIL 209
+ + LL Q+ S + + I +
Sbjct: 236 M--ILAALLTLLL--NQNTFSGV----------------LLVISILIAIIYFAEAFRSPK 275
Query: 210 CTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVM-DTSIGSFTIPPASLSS 268
+E + L+ P++ ++F A+Y QM + + I F +PPA S
Sbjct: 276 VF----DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQS 331
Query: 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLR 328
+ +I + PI + + R + S + +GL L ++ +
Sbjct: 332 LNPFFIILFSPILAALWTKLGRG----NKQPSTPIKFALGLIL----AGLGFLILLLAGI 383
Query: 329 LARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSL 388
S +S++W + Y L E+ L +P A++S A+
Sbjct: 384 WFG-------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWF 436
Query: 389 LTTALGNYLSSFI--LTVVTY 407
LT A G L + LT VT
Sbjct: 437 LTVAAGQTLGGQVAGLTAVTD 457
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-28
Identities = 85/313 (27%), Positives = 148/313 (47%), Gaps = 53/313 (16%)
Query: 19 VGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWF 78
+GA+ P A+ GL LIALGTGGIKPCVS+FG DQF++ + R + FF++F
Sbjct: 73 LGAVPSLGHPLHDALSLVGLALIALGTGGIKPCVSAFGGDQFEERQLSLRFR---FFSFF 129
Query: 79 YFSINIGALISSSLIVWIQ--------DNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQ 130
YF+IN G+L S++I I + L FG+P + M A+ F G+ +Y+ +
Sbjct: 130 YFAINAGSLF-STIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKK 188
Query: 131 RPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKA 190
P G+ ++++ + +V + +K + E L LD A
Sbjct: 189 PPVGNIVSKVMKCIVFALKKR----------------------FRTRSEDWPRLHWLDWA 226
Query: 191 AVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGM 250
A + + K L+R+ ++ +F A++ Q + + Q
Sbjct: 227 APKYLIRM----------------IRSTKRLLRVLFLFIPLPMFWALFDQQGSRWTLQAT 270
Query: 251 VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLF 310
MD +G F I P + + + + V+ VPI+D ++ P K + F+ L++M +G+
Sbjct: 271 RMDGDVGLFPIQPDQMQAVNPLLVLILVPIFDYVVYPALAKCGTR---FTSLRKMAVGML 327
Query: 311 LSVLCMSAAAVVE 323
L+ L + AA+++
Sbjct: 328 LAALAFAVAALLQ 340
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 26 ATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIG 85
A + F+GL IA+G+G K SS ++ D R F FY SINIG
Sbjct: 97 AMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRR---DGGFTLFYMSINIG 153
Query: 86 ALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSG 123
+ IS L I +N G+ +GF + A+ M + +FF+G
Sbjct: 154 SFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAG 191
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILT 403
+SI WQ+PQY L A EV + LEF Y Q+P M+S+ AL LLT A+GN I+
Sbjct: 550 VSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGN----IIVL 605
Query: 404 VVTYF 408
++ F
Sbjct: 606 IIAEF 610
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSS 91
+ + G+ IA+G G K SS + ++ D + F +Y SINIG+ S
Sbjct: 113 GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSML 168
Query: 92 LIVWIQDNAGWGLGFGIPALFMGFAIASF 120
W+ GW + F + + M + +F
Sbjct: 169 ATPWLAAKYGWSVAFALSVVGMLITVVNF 197
|
Length = 500 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 18 CVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNW 77
A + + G +L+ LG G + P ++ A+ F ++G
Sbjct: 74 FALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWF------PPKERGRALGL 127
Query: 78 FYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFF 121
F +GAL+ L + ++ GW F I A+
Sbjct: 128 FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL 171
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.98 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.97 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.96 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.7 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.69 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.68 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.68 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.66 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.66 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.65 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.65 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.65 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.64 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.64 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.64 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.63 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.62 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.62 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.61 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.61 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.59 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.58 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.58 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.58 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.58 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.58 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.57 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.57 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.57 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.57 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.56 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.55 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.55 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.54 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.54 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.52 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.51 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.51 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.5 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.5 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.5 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.49 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.49 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.48 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.48 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.47 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.47 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.47 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.45 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.44 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.44 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.44 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.44 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.44 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.43 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.42 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.41 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.41 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.41 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.4 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.4 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.4 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.39 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.39 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.38 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.36 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.36 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.36 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.35 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.33 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.32 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.3 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.29 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.29 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.28 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.27 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.26 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.25 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.23 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.21 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.2 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.19 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.17 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.15 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.14 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.13 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.09 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.08 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.06 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.05 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.04 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.01 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.01 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.88 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.88 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.85 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.85 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.82 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.81 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.72 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.7 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.68 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.65 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.63 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.6 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.55 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.52 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.47 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.47 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.46 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.43 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.42 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.41 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.38 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.37 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.37 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.36 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.36 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.35 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.34 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.33 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.32 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.31 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.31 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.3 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.28 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.27 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.25 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.23 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.22 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.2 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.2 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.19 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.16 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.14 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.13 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.13 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.08 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.08 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.07 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.06 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.06 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.04 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.04 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.04 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.03 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.02 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 97.99 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 97.99 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 97.99 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 97.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 97.97 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 97.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 97.96 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 97.95 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 97.94 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.94 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 97.93 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 97.9 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 97.9 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 97.9 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 97.85 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 97.85 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.83 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 97.82 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.81 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.8 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 97.79 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 97.79 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.78 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 97.77 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.77 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 97.76 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 97.76 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.75 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 97.75 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 97.74 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.73 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.7 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.7 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.62 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 97.6 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.57 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.51 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 97.49 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.48 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.48 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.48 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 97.48 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.48 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.47 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.45 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.42 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 97.39 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.39 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.37 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.34 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.33 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 97.25 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 97.24 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 97.13 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 97.12 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.07 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 97.0 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 96.99 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 96.98 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 96.92 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 96.87 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 96.85 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.73 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 96.66 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 96.6 | |
| PRK11462 | 460 | putative transporter; Provisional | 96.49 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 96.47 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 96.43 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 96.41 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 96.36 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 96.36 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 96.35 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.26 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.18 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 96.14 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.05 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 95.85 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.73 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 95.6 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 95.6 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.54 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.44 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 95.18 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 95.0 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 94.43 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.63 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 93.45 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 93.34 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 93.2 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 93.14 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 93.02 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 92.98 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 92.37 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 92.16 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 91.94 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 91.77 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 91.47 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 91.34 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 91.16 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 90.81 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 89.04 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 88.64 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 88.41 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 87.88 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 87.52 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 84.6 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 82.31 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=393.65 Aligned_cols=442 Identities=52% Similarity=0.891 Sum_probs=391.0
Q ss_pred EEeecccCCCCCCCc----CCCCCCCCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHH
Q 012668 4 LTLSASIPALKPAEC----VGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFY 79 (458)
Q Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~ 79 (458)
+++++.+|.|+|.+| .++.|+.++......++.++.++++|.|+.+|+..++.+|||++.++++++++.+.|.|+|
T Consensus 121 lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~y 200 (571)
T KOG1237|consen 121 LTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFY 200 (571)
T ss_pred HHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHH
Confidence 577899999999886 8889999999999999999999999999999999999999999766666667889999999
Q ss_pred HHHHHHHHHHhHhhhhccccccchhhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCc
Q 012668 80 FSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDS 159 (458)
Q Consensus 80 ~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (458)
+..|+|..++-.+..|++++.||.+.|.++++.+++++++|+.+.+.|++.+|.++|...+.+++..+.+++....+.+.
T Consensus 201 f~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~ 280 (571)
T KOG1237|consen 201 FSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDP 280 (571)
T ss_pred HHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877665543
Q ss_pred chhhhccchhhhccCCcccccCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012668 160 TLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYA 239 (458)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 239 (458)
+...+ ...+....++.++++++|.+.+.......++...++|+.++.+++||.|..++.++++...++++..+.
T Consensus 281 ~~~~~------~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~a 354 (571)
T KOG1237|consen 281 EELYY------DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYA 354 (571)
T ss_pred hhccc------cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 32200 001112233456788999987754433233344678999999999999999999999999999999999
Q ss_pred hcchhHHHHHHhhcCCCcC-cccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHH
Q 012668 240 QMSTLFVEQGMVMDTSIGS-FTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSA 318 (458)
Q Consensus 240 ~~~s~~~~~~~~~~~~~~~-~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~ 318 (458)
|+.+.++.|+.+||+..++ +.+|++.++.+..+.+.+..|+.+++..|+.+|..++++..+.+.|+.+|+++..+++..
T Consensus 355 q~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~ 434 (571)
T KOG1237|consen 355 QMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAV 434 (571)
T ss_pred hhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHH
Confidence 9999999999999999987 999999999999999999999999999999999988766789999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHh
Q 012668 319 AAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLS 398 (458)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig 398 (458)
.+..+..|++.+.+ +....+++|++|++++|+++|+||++..++.+|+.++++|++||+..+++|.+..++|+.++
T Consensus 435 aa~vE~krl~~~~~----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~ls 510 (571)
T KOG1237|consen 435 AGIVEAKRLKTAVS----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLS 510 (571)
T ss_pred HHHHHHHHhhhhhh----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887655 11224579999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhhhhccCCCcCCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 012668 399 SFILTVVTYFTTAGGKTGWIP-DNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457 (458)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~~~ 457 (458)
..++.++...+.. ..+|++ +++|.+.++++|++++.+..+..+.+.+..++|++++.
T Consensus 511 s~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~ 568 (571)
T KOG1237|consen 511 SVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDD 568 (571)
T ss_pred HHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccc
Confidence 9999988766532 347999 99999999999999999999999999999999987653
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=312.46 Aligned_cols=370 Identities=22% Similarity=0.317 Sum_probs=278.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+...++++++++++|+|++|||.+++++|+|+++|+ ||+.+|+++|++.|+|++++|++++++++++||++.|.+
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4688999999999999999999999999999999886 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecC--CCCCchh------hHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCccccc
Q 012668 109 PALFMGFAIASFFSGTSLYRFQR--PGGSPIT------RMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (458)
+++.+.+++++++++++.+...+ ++.+++. ...+........ + +.. +-.
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~-------------~l~ 247 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAA-----L-----LTL-------------LLN 247 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHH-----H-----HHH-------------HHH
Confidence 99999999999999998776532 2222221 011111111100 0 000 000
Q ss_pred CCccchhhhhhcc-ccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HhhcCCCcC
Q 012668 181 SDELRCLDKAAVV-SDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQG-MVMDTSIGS 258 (458)
Q Consensus 181 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~ 258 (458)
.+++++....... .......+.. . .++.. +|+|+....++++...++||+.++|+.+.+..++ .+.|++..|
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~~--~---~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g 321 (498)
T COG3104 248 QNTFSGVLLVISILIAIIYFAEAF--R---SPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFG 321 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--c---cCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccc
Confidence 0001111000000 0000000000 0 02223 7899999999999999999999999999887776 456677566
Q ss_pred cccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 012668 259 FTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQ 338 (458)
Q Consensus 259 ~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
+++|++++|++|++.++++.|+++++++|+.++. + +++...|+++|+.+++.+++.+.....+. .
T Consensus 322 ~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~---~ps~~~KFalGl~l~g~~fl~l~~~~~~~-----------~ 386 (498)
T COG3104 322 FEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-K---QPSTPIKFALGLILAGLGFLILLLAGIWF-----------G 386 (498)
T ss_pred eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-C---CCCcchHHHHHHHHHHHHHHHHHHHHHhh-----------c
Confidence 9999999999999999999999999999887664 2 38999999999999999999998874431 1
Q ss_pred CCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCC
Q 012668 339 NVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWI 418 (458)
Q Consensus 339 ~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~ 418 (458)
+++...|++|++++|+++++||.+++|.+++.+++.+|+++++.+++.|++.++.|+.++..+.+.-.. +.
T Consensus 387 ~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~-------- 457 (498)
T COG3104 387 GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD-------- 457 (498)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc--------
Confidence 113457999999999999999999999999999999999999999999999999999999888773221 00
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 012668 419 PDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 456 (458)
Q Consensus 419 ~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~~ 456 (458)
+..+.......|+.+++++++..+.++...++.+|..
T Consensus 458 -~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~ 494 (498)
T COG3104 458 -PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMM 494 (498)
T ss_pred -hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 0111233456789999999999988888887776643
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=275.57 Aligned_cols=377 Identities=15% Similarity=0.152 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHH
Q 012668 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPAL 111 (458)
Q Consensus 32 ~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i 111 (458)
..+++++.++++|.|.++|+.+++++|+||++++ +|+++++++|...|+|+.++|.++|++.+++|||+.|.++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 4466778888899999999999999999988752 499999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcceeecCC-CCCchhh--HHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 112 FMGFAIASFFSGTSLYRFQRP-GGSPITR--MCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 112 ~~~l~~ii~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++++++++++.++.+.+... ++++..+ .............. ....+... .+. + .+.+
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----------~~~--~--~~~~ 237 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLV----ATPALITV-----------LFW--K--EWSV 237 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHH----HHHHHHHH-----------HHH--H--HHHH
Confidence 898988888877766544211 1122211 00000000000000 00000000 000 0 0000
Q ss_pred hhhc---cccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HhhcCCCcCcccCcC
Q 012668 189 KAAV---VSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQG-MVMDTSIGSFTIPPA 264 (458)
Q Consensus 189 ~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~~ 264 (458)
.... ....... .+...+....+|+|++..++.++...++||+.|+|..+.+...+ +++|+++.|+++|++
T Consensus 238 ~~~~~~~~~~~~~~------~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~ 311 (493)
T PRK15462 238 YALIVATIIGLGVL------AKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTA 311 (493)
T ss_pred HHHHHHHHHHHHHH------HHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHH
Confidence 0000 0000000 00000112346788899999999999999999999998766555 678999899999999
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
|+|++|++.+++++|++.+++.++.+| +++++...|+.+|+++.++|++.+.+..... +++ ..+
T Consensus 312 ~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~----~~~--------~~~ 375 (493)
T PRK15462 312 MFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKFALGLGLMSAGFCILTLSARWS----AMY--------GHS 375 (493)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc----CCC--------CCc
Confidence 999999999999999999966554332 2247899999999999999999887765321 111 137
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHH-HHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTT-ALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~-~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
|.+|++..++++++||.+.+|.+++++.+.+|++++|+++|+|++.. ++|+.+++.+.+.......+++ .-. .-.
T Consensus 376 s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~--~~~--~~~ 451 (493)
T PRK15462 376 SLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDAS--GAI--NYS 451 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcc--ccc--cch
Confidence 89999999999999999999999999999999999999999999954 8999999888886532110000 000 001
Q ss_pred CchhHHHHHHHHHHHHHH-HHHHH-HhhhccccccC
Q 012668 424 KGHLDYFFWLLAGLSIFN-MLLYV-VCAKKYKQKKA 457 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~-~v~~~-~~~~~~~~~~~ 457 (458)
...+..+|..++.++++. .++++ .+.+.+|.|+|
T Consensus 452 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
T PRK15462 452 INAYIEVFDQITWGALACVGVVLMIWLYQALKFRNR 487 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 124667788888877766 55444 34444444443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=269.36 Aligned_cols=372 Identities=19% Similarity=0.218 Sum_probs=256.2
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHH
Q 012668 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPAL 111 (458)
Q Consensus 32 ~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i 111 (458)
..++++++++++|.|+++|+..++++|+||++++ ||+++++++|++.|+|+++||.++|++.+++|||++|+++++
T Consensus 106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 3466899999999999999999999999988752 378899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCcceeecC--CCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchh--
Q 012668 112 FMGFAIASFFSGTSLYRFQR--PGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCL-- 187 (458)
Q Consensus 112 ~~~l~~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 187 (458)
.++++++.+.+.++.+++.+ |++++ .|..+.............. ..... ++.....+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~l~~~~~~~~~~~-----~~~~~------------~~~~~~~~~~~ 243 (489)
T PRK10207 182 GLIIALLVYFACRGMVKDIGSEPDHKP-MSFSKLLLVLLGSVVMIFV-----CAWLM------------HNVEVANLVLI 243 (489)
T ss_pred HHHHHHHHHHHcchhhcccCCCCCccc-hhhhhHHHHHHHHHHHHHH-----HHHHH------------hhhhHHHHHHH
Confidence 88877777777766654432 22222 2333322111100000000 00000 000000000
Q ss_pred hhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH-hhcCCCcCcccCcCcc
Q 012668 188 DKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGM-VMDTSIGSFTIPPASL 266 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~l 266 (458)
....+...... ++..+.++ .++++.+....++...+++|..+.|..+.+..+.. +++++..|+.++++++
T Consensus 244 ~~~~i~~~~f~--------~~~~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~ 314 (489)
T PRK10207 244 VLSIVVTIIFF--------REAFKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSF 314 (489)
T ss_pred HHHHHHHHHHH--------HHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHH
Confidence 00000000000 00001122 33555556666777899999999999877666554 5677667889999999
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012668 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
+++|++.++++.|+.+++..+ +++|+.++++..|+.+|+++.++|++.+....... . +. +..++.
T Consensus 315 ~~~n~~~iii~~pl~~~l~~r----l~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~------~~--~~~~s~ 379 (489)
T PRK10207 315 QALNPFWVVVASPILAGIYTH----LGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---A------DA--QGLTSP 379 (489)
T ss_pred HhHhHHHHHHHHHHHHHHHHH----HhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---c------CC--CCccCH
Confidence 999999999999999885444 44344348999999999999999987665432110 0 00 113578
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
||+++.+++.|+||++.+|++++++++.+|++++|.++|+|++.+++|+.+|..+.+.+....+ ..++. ...+.
T Consensus 380 ~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~--~~~~~----~~~~~ 453 (489)
T PRK10207 380 WFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN--ITDPL----ETLPV 453 (489)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccch----hhhhh
Confidence 9999999999999999999999999999999999999999999999999999998876531100 00000 00124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012668 427 LDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
+.++|..+++++++..++++++.++++|.
T Consensus 454 ~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 454 YTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999998888888877777653
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-30 Score=263.27 Aligned_cols=360 Identities=19% Similarity=0.244 Sum_probs=257.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++++++.|+|.|+++|+..++++|+++++++ ++|+++++++|++.|+|.++||+++|++.+++|||+.|+++
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 456778899999999999999999999999987652 14899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhH----HHHH-------HHHHHhhccccCCCcchhhhccchhhhccCCccc
Q 012668 110 ALFMGFAIASFFSGTSLYRFQRPGGSPITRM----CQVL-------VASFRKWNLEVPNDSTLLYETQDKASAIEGSRKI 178 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (458)
++.++++.+++++.++.+++.++++++..+. .+.. ................
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 239 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIA------------------ 239 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHH------------------
Confidence 9888888777777776665433322221110 0000 0000000000000000
Q ss_pred ccCCccchhh-hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-HHhhcCCC
Q 012668 179 EHSDELRCLD-KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQ-GMVMDTSI 256 (458)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~ 256 (458)
+...... .....+..... ..+ +.++ +++++..+.++++...+++|+.|+|..+.+..+ ..++|++.
T Consensus 240 ---~~~~~~~~~~~~~~~~~~~----~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~ 307 (475)
T TIGR00924 240 ---NILLMTVTLAVIIFFFRLA----FKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEM 307 (475)
T ss_pred ---HHHHHHHHHHHHHHHHHHH----Hhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence 0000000 00000000000 000 1122 234445567888899999999999999876544 45678888
Q ss_pred cCcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012668 257 GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELV 336 (458)
Q Consensus 257 ~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 336 (458)
+++++|+++++++|++.+++++|+.++++.++.+| .++++...|+.+|+++.++++..+.+.... .++
T Consensus 308 ~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~---- 375 (475)
T TIGR00924 308 LGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDPTTPLKFTLGMLFCGASFLTFAASIWF----ADA---- 375 (475)
T ss_pred cceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC----
Confidence 88999999999999999999999999765554443 222677889999999999999988765321 111
Q ss_pred CCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcC
Q 012668 337 DQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTG 416 (458)
Q Consensus 337 ~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~ 416 (458)
..++|++|+++++++.++||.+..|..++++++.+|+++||+++|++.+...+|+.+++.+......
T Consensus 376 ----~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~--------- 442 (475)
T TIGR00924 376 ----GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV--------- 442 (475)
T ss_pred ----CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 1247999999999999999999999999999999999999999999999999999999998875531
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012668 417 WIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 417 ~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
..+...+|..+++++++..++++++.++.+|
T Consensus 443 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 473 (475)
T TIGR00924 443 -------PQGVTGVFGKIGLVTLLVGVVMALMVPWLNR 473 (475)
T ss_pred -------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1224567888888888888888888877765
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=260.10 Aligned_cols=369 Identities=18% Similarity=0.253 Sum_probs=255.3
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHH
Q 012668 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPA 110 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~ 110 (458)
...+++++++.|+|.|.+.|+..++++|+||++++ +|+++++++|++.|+|..+||+++|++.+++|||+.|++++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 45677889999999999999999999999987652 36779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcceeec--CCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 111 LFMGFAIASFFSGTSLYRFQ--RPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 111 i~~~l~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
+.++++++.+++.++.+++. +|++++. |..+....+.....+..... ..+.+. . .......+.
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~--------~--~~~~~~~~~ 252 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPI-NYRKLLLTIVGVVALIAIAT----WLLHNQ--------E--IARMALGVV 252 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCcccc-chhhHHHHHHHHHHHHHHHH----HHHhcc--------h--HHHHHHHHH
Confidence 88888887776666555443 2222222 22222111111000000000 000000 0 000000000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH-hhcCCCcCcccCcCccc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGM-VMDTSIGSFTIPPASLS 267 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~l~ 267 (458)
...... ... ...++.++ +|+++....+.++...++||+.+.|.++.+..+.. ++|++..|+.+++++++
T Consensus 253 ~~~~~~-~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~ 322 (500)
T PRK09584 253 ALGIVV-IFG--------KEAFAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQ 322 (500)
T ss_pred HHHHHH-HHH--------HHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHH
Confidence 000000 000 00001122 34555666677778899999999999998887764 46667778899999999
Q ss_pred cchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhH
Q 012668 268 SFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIF 347 (458)
Q Consensus 268 ~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 347 (458)
++|++.+++++|+.+++ ++|+.+| .++.+|+.+|+++.++|++.+.....+ +++ +..+|.+
T Consensus 323 s~n~i~iil~~p~~~~~----~~~l~~r---~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~--------~~~vs~~ 383 (500)
T PRK09584 323 ALNPFWIMIGSPILAAI----YNKMGDR---LPMPHKFAIGMVLCSGAFLVLPLGAKF----AND--------AGIVSVN 383 (500)
T ss_pred HHhHHHHHHHHHHHHHH----HHHhCcC---CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC--------CCccCHH
Confidence 99999999999999884 4444444 678899999999999999998776422 111 1246788
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC-CCch
Q 012668 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL-NKGH 426 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
|+++++++.|+||++++|.+++++++.+|+++||+++|+|.+..++|+.+++.+.+.+.... -..+.. ..+.
T Consensus 384 ~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~-------~~~~~~~~~~~ 456 (500)
T PRK09584 384 WLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPD-------NVTDPLMSLEV 456 (500)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------ccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999988887543100 000011 1123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012668 427 LDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
+...|..+++++++.++++++..++.+|
T Consensus 457 ~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 457 YGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888898888777777777766654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-30 Score=258.54 Aligned_cols=339 Identities=40% Similarity=0.661 Sum_probs=220.6
Q ss_pred CCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhh
Q 012668 26 ATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLG 105 (458)
Q Consensus 26 ~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~ 105 (458)
+...+.+.+++++.++++|.|++|||..++++|||+++++ .+|+++|+|||+++|+|+++++.+.+|+++++||.+.
T Consensus 28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~ 104 (372)
T PF00854_consen 28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG 104 (372)
T ss_dssp ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence 3455788999999999999999999999999999998742 3599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCcceeec-CCCCCchhh-HHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCc
Q 012668 106 FGIPALFMGFAIASFFSGTSLYRFQ-RPGGSPITR-MCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDE 183 (458)
Q Consensus 106 F~i~~i~~~l~~ii~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (458)
|+++++.+++++++++..++.|++. +|.++++.+ .........+++....+ .............. .......
T Consensus 105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~ 178 (372)
T PF00854_consen 105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVP-KGSSWLDWALFQYS-----ERSIFGI 178 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH--HHHHHHHHHHHHHC-----CCCCCCC
T ss_pred hhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccc-cchHHHHHhhhhhh-----hhhhhhh
Confidence 9999999999999999999988887 666677766 33334444444433332 11111110000000 0000000
Q ss_pred cchhhhhhccccccccCCCCCCCcc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcC-ccc
Q 012668 184 LRCLDKAAVVSDAEIKSGDFSNPWI-LCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGS-FTI 261 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~ 261 (458)
....+.......... .|. .++++++++.|.+.+.++.+...+.++..+.+..+....+...+|+...+ +.+
T Consensus 179 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (372)
T PF00854_consen 179 IVFIRAAVIFFPEIF-------FWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGI 251 (372)
T ss_dssp CCHHHHHHHHCCCHH-------HHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-----
T ss_pred hhhccchhhhhhhhh-------hcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhcccccccccccccc
Confidence 001110000000000 011 02335566667777777777667777777777666666776777777777 899
Q ss_pred CcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 012668 262 PPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVS 341 (458)
Q Consensus 262 ~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
|+++++++|++.++++.|+.+++++|+.++ +++ +++..|+.+|.++..++++.....+..|....+++|
T Consensus 252 p~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~------- 320 (372)
T PF00854_consen 252 PPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---PSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG------- 320 (372)
T ss_dssp -SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T-------
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---chhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-------
Confidence 999999999999999999999999998873 233 899999999999999999998888775544433333
Q ss_pred ccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHH
Q 012668 342 VPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTA 392 (458)
Q Consensus 342 ~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ 392 (458)
..+.+|++..+++.+++|.+..+.+.+.+++.+|++..+.++|+|+....
T Consensus 321 -~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~ 370 (372)
T PF00854_consen 321 -KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSA 370 (372)
T ss_dssp -T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH-
T ss_pred -CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhc
Confidence 34558888999999999999999999988888888888888888777654
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=249.86 Aligned_cols=360 Identities=33% Similarity=0.577 Sum_probs=286.0
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc-------cch
Q 012668 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA-------GWG 103 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~-------gw~ 103 (458)
....++++.++++|.|+++||..++.+|+|+++++ ++|.++|.|+|+++|+|+++++++.+++.+++ ||+
T Consensus 85 ~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~ 161 (654)
T TIGR00926 85 DLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYP 161 (654)
T ss_pred HHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchH
Confidence 45578999999999999999999999999986542 34899999999999999999999999998554 699
Q ss_pred hhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCc
Q 012668 104 LGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDE 183 (458)
Q Consensus 104 ~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (458)
++|.+++++++++++++...++.+++.+|+++++.++.+++..+.+++..... ...+
T Consensus 162 ~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~-----------------------~~~~ 218 (654)
T TIGR00926 162 LAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRS-----------------------EHWP 218 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCC-----------------------cccc
Confidence 99999999999999999999988877777777777777777666654321110 0011
Q ss_pred cchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCc
Q 012668 184 LRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPP 263 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 263 (458)
.+|.|.+... ...++++++|+++++++++...++||..+.|+.+.+..|+..+++.++++.+++
T Consensus 219 ~~~ld~a~~~----------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~ 282 (654)
T TIGR00926 219 LHWLDYAKDK----------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQP 282 (654)
T ss_pred hhHHHHhccc----------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCH
Confidence 3455554211 123567889999999999999999999999999999999988888888889999
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLR--------------- 328 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~--------------- 328 (458)
++++.+|++.++++.|++++.++|..+|++.+ .++..|+.+|+++++++++.+...+..+++
T Consensus 283 ~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~ 359 (654)
T TIGR00926 283 DQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQV 359 (654)
T ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEE
Confidence 99999999999999999998888888775444 789999999999999999999888877650
Q ss_pred ----------------------------H------------Hhh--h-----------------------------c---
Q 012668 329 ----------------------------L------------ARE--L-----------------------------E--- 334 (458)
Q Consensus 329 ----------------------------~------------~~~--~-----------------------------~--- 334 (458)
. .+. + +
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (654)
T TIGR00926 360 LNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISY 439 (654)
T ss_pred ecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCceE
Confidence 0 000 0 0
Q ss_pred -c------------------------------------------------------------------------------
Q 012668 335 -L------------------------------------------------------------------------------ 335 (458)
Q Consensus 335 -~------------------------------------------------------------------------------ 335 (458)
+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (654)
T TIGR00926 440 VLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRID 519 (654)
T ss_pred EEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeeccccc
Confidence 0
Q ss_pred ---------------------cCCC--------------CCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhH
Q 012668 336 ---------------------VDQN--------------VSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMR 380 (458)
Q Consensus 336 ---------------------~~~~--------------~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~ 380 (458)
++++ ..+++|++|++++|++.++||++.+.+.+++.++++|++||
T Consensus 520 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mk 599 (654)
T TIGR00926 520 NAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMK 599 (654)
T ss_pred ccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHH
Confidence 0000 02336789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012668 381 SLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 381 g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
...+++|.+..++|+.+...+...=.. ..-...|..++.+.++.++++.++.+.|
T Consensus 600 s~~~a~~~~~~~~g~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 600 SVLQALWLLTVAIGNLIVVVIAEFENF-----------------SVQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-----------------hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999988776553110 1123457777778777777777777654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=154.32 Aligned_cols=295 Identities=13% Similarity=0.105 Sum_probs=177.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|++.+...|...+++.|.+|+++ |++++++++...++|..+||.++|++. ++|||+.|++.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 56778899999999999999999999999998776 999999999999999999999999998 68999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhh
Q 012668 110 ALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDK 189 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (458)
++..++..+...+..++. ++.+.. .+.. + ++..
T Consensus 171 ~~~~~~~~i~~~~~~~~~---~~~~~~-~~~~----------------------------------------~--~~~~- 203 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAY---KLSTVR-TPVR----------------------------------------E--GMTR- 203 (400)
T ss_pred HHHHHHHHHHHHHhCCcc---cccccc-hhhH----------------------------------------H--HHHH-
Confidence 876665544433322211 100000 0000 0 0000
Q ss_pred hhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccccc
Q 012668 190 AAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSF 269 (458)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~l 269 (458)
...+.+ +.... .....++..+.+....+..... + . ++.....+.+..+
T Consensus 204 ------------------------~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~p~~~~--~-~-~~~~~~~g~l~~~ 251 (400)
T PRK11646 204 ------------------------VLRDKR-FVTYV---LTLTGYYMLAVQVMLMLPIMVN--D-I-AGSPSAVKWMYAI 251 (400)
T ss_pred ------------------------HHcCch-HHHHH---HHHHHHHHHHHHHHHhhhhhHH--h-h-cCCchHHHHHHHH
Confidence 000111 11111 1111122222222111111111 1 1 0011112222233
Q ss_pred hhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHH
Q 012668 270 DVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQ 349 (458)
Q Consensus 270 n~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 349 (458)
+....+.......+ ..+| | .+..+++..+.++.++++..+...+ +.++.
T Consensus 252 ~~~~~~~~~~~~~~----~~~~---r---~~~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~ 300 (400)
T PRK11646 252 EACLSLTLLYPIAR----WSEK---R---FRLEHRLMAGLLIMSLSMFPIGMVS---------------------NLQQL 300 (400)
T ss_pred HHHHHHHHHHHHHH----HHHH---h---cchhHHHHHHHHHHHHHHHHHHHhh---------------------hHHHH
Confidence 33322222222222 2222 1 3334556777777777776665432 34445
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHH
Q 012668 350 IPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDY 429 (458)
Q Consensus 350 i~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (458)
+....+.++|+++..|...+.+.+.+|++.+|..+|++++..++|..+|+.+.+.+.+.... .+....
T Consensus 301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~------------~~~~~~ 368 (400)
T PRK11646 301 FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA------------LNQPEL 368 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh------------cCCcch
Confidence 55667889999999999999999999999999999999999999999999999988654210 011234
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 012668 430 FFWLLAGLSIFNMLLYVVCAKKYK 453 (458)
Q Consensus 430 ~f~~~a~i~~~~~v~~~~~~~~~~ 453 (458)
.|...+++++++.+.+....|+.|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~ 392 (400)
T PRK11646 369 PWMMLGIIGLITLLALYWQFSQKR 392 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhch
Confidence 566666776766666555444443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-15 Score=150.51 Aligned_cols=299 Identities=10% Similarity=-0.002 Sum_probs=177.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+...|...+++.|.+++++ |+++.++++...++|..+||.++|++.+..||+|.|++
T Consensus 108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~ 181 (417)
T PRK10489 108 PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL 181 (417)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 356777888999999999999999999999998776 89999999999999999999999999988899999998
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..+++.+..+...+ .++++++..+ .. + +..+
T Consensus 182 ~~~~~~~~~~~~~~l~~----~~~~~~~~~~-------------------------------------~~---~--~~~~ 215 (417)
T PRK10489 182 AAAGTFITLLPLLRLPA----LPPPPQPREH-------------------------------------PL---R--SLLA 215 (417)
T ss_pred HHHHHHHHHHHHHhCCC----CCCCCccccc-------------------------------------ch---H--HHHH
Confidence 88766665554433221 1111100000 00 0 0000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
.. +.+.+.+.+.... + .... +.........+... .....+.-....+.+..
T Consensus 216 ~~----------------------~~~~~~~~~~~~~-~--~~~~-~~~~~~~~~~~p~~---~~~~~g~~~~~~g~~~~ 266 (417)
T PRK10489 216 GF----------------------RFLLASPVVGGIA-L--LGGL-LTMASAVRVLYPAL---ADEVWQMGAAQIGLLYA 266 (417)
T ss_pred HH----------------------HHHHcChHHHHHH-H--HHHH-HHHHHhHHHhhHHH---HHhccCCChhHhHHHHH
Confidence 00 0000011111111 1 1111 11111111111111 11111100111223333
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012668 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
...+..++...+..+ +.+| .++.+.+..+.++.+++++.+... .+++.
T Consensus 267 ~~~~g~~ig~~~~~~----l~~~-------~~~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~ 314 (417)
T PRK10489 267 AVPLGAALGALTSGW----LAHS-------ARPGLLMLLSTLGSFLAVGLFGLM---------------------PMWIL 314 (417)
T ss_pred HHHHHHHHHHHHHHH----hhhc-------cCcchHHHHHHHHHHHHHHHHHcc---------------------chHHH
Confidence 333334444444443 3332 222334566666666676655432 14455
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhH
Q 012668 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLD 428 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
.....++.+++.+...+...+++.+..|++.||+.+|+++....+|..+|+.+.+.+.+.. +..
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~----------------g~~ 378 (417)
T PRK10489 315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM----------------TPV 378 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh----------------chh
Confidence 5667788889888888888899999999999999999999999999999999999876422 123
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccc
Q 012668 429 YFFWLLAGLSIFNMLLYVVCAKKYKQKK 456 (458)
Q Consensus 429 ~~f~~~a~i~~~~~v~~~~~~~~~~~~~ 456 (458)
..+...+++.++..++.....+++|+++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (417)
T PRK10489 379 ASASASGFGLLIIGVLLLLVLGELRRFR 406 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4455556555555555555555555544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-15 Score=148.54 Aligned_cols=285 Identities=11% Similarity=0.046 Sum_probs=174.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+...|...+++.|++|++| |+++++++..+.++|..+||.+++++.+++|||+.|++
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 168 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA 168 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence 478888999999999999999999999999999876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++..+..+...++ +|++++ .+ +-+
T Consensus 169 ~~~~~~l~~~~~~~~~~~----~~~~~~-~~----------------------------------------------~~~ 197 (390)
T PRK03545 169 IGGGALITLLLLIKLLPL----LPSEHS-GS----------------------------------------------LKS 197 (390)
T ss_pred HHHHHHHHHHHHHHhCCC----CCCCCc-ch----------------------------------------------HHH
Confidence 887665554443322221 111100 00 000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcc-cCcCcc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMF-PIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFT-IPPASL 266 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~l 266 (458)
. .+....+.+.... ..+......+..+ +....... +. . +.+ ...+.+
T Consensus 198 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~--~~-~-g~s~~~~~~~ 246 (390)
T PRK03545 198 L-----------------------PLLFRRPALVSLYLLTVVVVTAHFTAY----SYIEPFVQ--QV-A-GLSENFATLL 246 (390)
T ss_pred H-----------------------HHHHhCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--Hh-c-CCCccHHHHH
Confidence 0 0000001111111 1111111111111 11111111 10 0 011 111222
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012668 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
.....+..++...+..+ +.+|. . ++++..+..+.+++...+.... .+.
T Consensus 247 ~~~~~~~~~~g~~~~g~----l~dr~-------~-~~~~~~~~~~~~~~~~~l~~~~--------------------~~~ 294 (390)
T PRK03545 247 LLLFGGAGIIGSVLFSR----LGNRH-------P-SGFLLIAIALLLVCLLLLLPAA--------------------NSE 294 (390)
T ss_pred HHHHHHHHHHHHHHHHH----Hhhcc-------c-hhHHHHHHHHHHHHHHHHHHHh--------------------chH
Confidence 22233333334444433 33332 2 2345556555555554433221 245
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
+.+++..++.|++.....+...+.+.+..| +.+|.++|+++....+|..+|+.+.+.+.+. .+
T Consensus 295 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~----------------~g 357 (390)
T PRK03545 295 WHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH----------------LG 357 (390)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------cC
Confidence 566677888899988888888888888877 5789999999999999999999999987632 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 427 LDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
+...|...+.+.+++.+.+....|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 358 LSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcc
Confidence 456778888888777777665554
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-17 Score=163.71 Aligned_cols=332 Identities=14% Similarity=0.190 Sum_probs=200.7
Q ss_pred EeecccCCCCCCCcCCCCCCCCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHH
Q 012668 5 TLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINI 84 (458)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~ni 84 (458)
.+|+..++|+| ++...+...+++.|+++|++.|...|++..+.++|.|++| |++..++.+.+..+
T Consensus 111 ~~sa~~t~l~P---------~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~ 175 (466)
T KOG2532|consen 111 LISALLTLLTP---------LAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQL 175 (466)
T ss_pred HHHHHHHHHHH---------HHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHH
Confidence 45777888899 7777777788999999999999999999999999999998 99999999999999
Q ss_pred HHHHHhHhhhhcccc-ccchhhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhh
Q 012668 85 GALISSSLIVWIQDN-AGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLY 163 (458)
Q Consensus 85 G~~igp~l~g~l~~~-~gw~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (458)
|.+++-+++|++.++ +||+++||+.++..++..+++++... +.|++|+... +.++.
T Consensus 176 g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~----d~P~~h~~is-------------------~~El~ 232 (466)
T KOG2532|consen 176 GTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS----DSPSKHPNIS-------------------EKELK 232 (466)
T ss_pred HHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCC-------------------HHHHH
Confidence 999999999999999 99999999999866666666544332 3455544211 00000
Q ss_pred hccchhhhccCCcccccCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 012668 164 ETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMST 243 (458)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s 243 (458)
+ +...+....... ....|| |.+++-.++++.-+..+.-......
T Consensus 233 ~----------------------I~~~k~~~~~~~---~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~ 276 (466)
T KOG2532|consen 233 Y----------------------IEKGKSEAHVKK---KPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYL 276 (466)
T ss_pred H----------------------HHhcccccccCC---CCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 0 000000000000 001122 2222222222222211111111111
Q ss_pred hHHHHHHhhcCCCcCccc-CcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHH--HHHHHHHHHHHHHHH
Q 012668 244 LFVEQGMVMDTSIGSFTI-PPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRM--GIGLFLSVLCMSAAA 320 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~-~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~--~~G~~l~~~g~~~~~ 320 (458)
.....+.+++..+ ++++ ..+++.+++.+...+...+...+.+++.+| .-. .+..+|+ .++....++.++.++
T Consensus 277 l~~y~PtY~~~VL-~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~ 351 (466)
T KOG2532|consen 277 LLTYLPTYLKEVL-GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLA 351 (466)
T ss_pred HHHHhhHHHHHHh-CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeee
Confidence 1112222332221 1222 456677777777777766666666656554 211 3444454 555555666666655
Q ss_pred HHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhh-hhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhh
Q 012668 321 VVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTF-IGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSS 399 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~-~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~ 399 (458)
+... -+. +..+.....+++..... +..+.-..+.+| ++.+..+|+.+....++..++|
T Consensus 352 ~~~~-------------------~~~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P 410 (466)
T KOG2532|consen 352 FTSD-------------------EHR-LLAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAP 410 (466)
T ss_pred ecCC-------------------Ccc-hHHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 5421 011 22222222222222222 223333333354 8899999999999999999999
Q ss_pred HHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012668 400 FILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
.+++.+.+ . + +.......|++.+++.+++.++|.++.
T Consensus 411 ~~vg~~~~-~-----------~-t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 411 LLVGIIVT-D-----------N-TREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HheeeEeC-C-----------C-CHHHHHHHHHHHHHHHHHhchheeEee
Confidence 99998753 1 1 123457889999999999998888774
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-15 Score=149.73 Aligned_cols=300 Identities=14% Similarity=0.136 Sum_probs=179.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+ ..|...+.+.|++++++ |+++++++....++|..++|.+++++.+..+||+.|++
T Consensus 105 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 177 (408)
T PRK09874 105 QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI 177 (408)
T ss_pred hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 357778889999999865 46778888999998776 99999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++..+..++..++. .++.+++... ++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------------------------------------~~~~ 210 (408)
T PRK09874 178 TASVLFLCFLVTLFCIREN--FQPVSKKEML---------------------------------------------HMRE 210 (408)
T ss_pred HHHHHHHHHHHHHHHhccC--cccccchhhh---------------------------------------------HHHH
Confidence 8876665555433322210 0111100000 0000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
... ..++.+...... .....+..........+..+..+............+.+..
T Consensus 211 ~~~----------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 265 (408)
T PRK09874 211 VVT----------------------SLKNPKLVLSLF---VTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIAS 265 (408)
T ss_pred HHH----------------------hCcCCchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 000 000001111011 1111111221111111111111111110000000111222
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012668 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
+..+..++..++..+ +.+|. .+++.+..+.++.+++++.....+ +.+.
T Consensus 266 ~~~l~~~~~~~~~g~----l~dr~-------g~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 313 (408)
T PRK09874 266 VPGVAALLSAPRLGK----LGDRI-------GPEKILITALIFSVLLLIPMSFVQ---------------------TPLQ 313 (408)
T ss_pred HHHHHHHHHHHHHHH----HHhcc-------ccchhHHHHHHHHHHHHHHHHHhc---------------------cHHH
Confidence 233333444444444 34443 333455566665555555443321 4455
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhH
Q 012668 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLD 428 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
..+..++.+++++...|...+.+.+..|++.+|..+++++....+|..+|+.+.+.+.+. .++.
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~----------------~g~~ 377 (408)
T PRK09874 314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN----------------YGFR 377 (408)
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh----------------cchh
Confidence 566778899999999999999999999999999999999999999999999999977531 1256
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc
Q 012668 429 YFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 429 ~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
..|.+.+++++++.+..+...+|.+.+
T Consensus 378 ~~f~~~~~~~l~~~~~~~~~~~~~~~~ 404 (408)
T PRK09874 378 AVFLVTAGVVLFNAVYSWNSLRRRRIP 404 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 778888888888887776666555543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-14 Score=142.37 Aligned_cols=282 Identities=11% Similarity=0.036 Sum_probs=173.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++.+++.|+|.+...|...+.+.|++++++ |+++++++..+.++|..+||.+++++.+++||++.|++.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 45678899999999999999999999999998876 999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhh
Q 012668 110 ALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDK 189 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (458)
++..++..+ +.++ .++.+++++ ++.++
T Consensus 185 ~~~~~~~~~---~~~~-~~~~~~~~~----------------------------------------------~~~~~--- 211 (399)
T PRK05122 185 MLLALLGLL---LARP-RPAVPPVKG----------------------------------------------ERLPF--- 211 (399)
T ss_pred HHHHHHHHH---HHhc-CCCCCCCCc----------------------------------------------cchhH---
Confidence 664433222 2121 111000000 00000
Q ss_pred hhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccccc
Q 012668 190 AAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSF 269 (458)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~l 269 (458)
.+..|........+.. ....+....+....... +.. .. ..+.....
T Consensus 212 -------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~---~~-~~~~~~~~ 257 (399)
T PRK05122 212 -------------------------RRVLGRVWPYGMGLAL---ASIGFGTIATFITLYYA--ARG---WD-GAALALTL 257 (399)
T ss_pred -------------------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--Hcc---cc-cchHHHHH
Confidence 0001111111111110 11111111111111111 111 10 11112222
Q ss_pred hhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHH
Q 012668 270 DVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQ 349 (458)
Q Consensus 270 n~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 349 (458)
..+..++..++..+ +.+| .++++.+..+.++.++++..+... .+.+.+
T Consensus 258 ~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~ 305 (399)
T PRK05122 258 FGVAFVGARLLFGN----LINR-------LGGLRVAIVSLLVEILGLLLLWLA---------------------PSPWMA 305 (399)
T ss_pred HHHHHHHHHHHHHH----HHHH-------hccHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHH
Confidence 23333333444444 4444 233355667777777776665543 145556
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHH
Q 012668 350 IPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDY 429 (458)
Q Consensus 350 i~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (458)
++..++.|++.+...|.....+.+..|++.||+.+|+++....+|..+++.+.+.+.+. .+++.
T Consensus 306 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----------------~g~~~ 369 (399)
T PRK05122 306 LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW----------------FGYPS 369 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------cCHHH
Confidence 67789999999999998888888999999999999999999999999988888876531 12566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 012668 430 FFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 430 ~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
.|.+.+++++++.+..++..++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 370 IFLAAALAALLGLALTWLLYRRA 392 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777766655544433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-14 Score=142.48 Aligned_cols=282 Identities=12% Similarity=0.011 Sum_probs=176.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+.+.+.+.+...|...++..+. +++ |++.++......++|.++||+++|++.+++|||+.|++
T Consensus 92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 92 HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 4678888899999999999999998887543 233 88999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.+....+.++ .+..+++ .+|+++. .+ + . ..+..++
T Consensus 164 ~~~~~~~~~~-~~~~~~~---~~~~~~~-~~------------------~------------------~--~~~~~~~-- 198 (382)
T TIGR00902 164 LTAGLAFMLI-GFLIKPT---IPPKDAI-PE------------------D------------------E--SQGDSAF-- 198 (382)
T ss_pred HHHHHHHHHH-HHHcCCC---CCCCccc-cc------------------c------------------c--cccchhH--
Confidence 7654333322 2222221 0111100 00 0 0 0000000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
......|++ ..+.....+.+....+..+....... +... .....+.+..
T Consensus 199 ------------------------~~~l~~~~~---~~~l~~~~l~~~~~~~~~~~~~~~l~--~~g~--s~~~~g~l~~ 247 (382)
T TIGR00902 199 ------------------------IALLKNPMN---LRFLAAVCLIQGAHAAYYGFSAIYWQ--AAGI--SASATGLLWG 247 (382)
T ss_pred ------------------------HHHHcChHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--HCCC--CHhHHHHHHH
Confidence 000011222 11222223333333333333222211 1111 1111223333
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012668 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
++.+..++..++.++ +.+| +++++.+.+|.++.++....+...+ +++.
T Consensus 248 ~~~~~~i~~~~~~~~----l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~ 295 (382)
T TIGR00902 248 IGVLAEIIIFAFSNK----LFQN-------CSARDLLLISAIACVGRWAIIGAIE---------------------AFPL 295 (382)
T ss_pred HHHHHHHHHHHHhHH----HHhh-------CCHHHHHHHHHHHHHHHHHHHHhHh---------------------hHHH
Confidence 344444444444444 4454 5666778889999988888776543 6677
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHH-HHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchh
Q 012668 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSL-LTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHL 427 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~-~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
++..++++++++++..+....++.+. |++.++..+++++ ...++|..+|+.+++.+.+.. +
T Consensus 296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~----------------g- 357 (382)
T TIGR00902 296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL----------------G- 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------c-
Confidence 77789999999999999999999998 9999999999986 567899999999999876421 1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012668 428 DYFFWLLAGLSIFNMLL 444 (458)
Q Consensus 428 ~~~f~~~a~i~~~~~v~ 444 (458)
...|+..+++++++.++
T Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 24577777777765443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=144.43 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++++++.|+|.+...|...+++.|++|+++ |+++++++....++|.+++|.+++++.++.+||+.|++.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 77888999999999999999999999999998876 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 012668 110 ALFMGFAIASFF 121 (458)
Q Consensus 110 ~i~~~l~~ii~~ 121 (458)
++..++..+..+
T Consensus 155 ~~~~~~~~~~~~ 166 (399)
T TIGR00893 155 GVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHHhh
Confidence 876655554433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=143.30 Aligned_cols=265 Identities=8% Similarity=0.033 Sum_probs=165.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++++++.|++.+...|...+++.|++++++ |+++++++....++|.++||.+++++.+..|||+.|++.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 67888999999999999999999999999998876 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCC-CCCchh-hHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchh
Q 012668 110 ALFMGFAIASFFSGTSLYRFQRP-GGSPIT-RMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCL 187 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
++..+++.+..+..+.+ ++++ ++++.. +..+ +..
T Consensus 165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------------------------------------------~~~ 200 (365)
T TIGR00900 165 AVGFAISALLIVSVRIP--ELAASEIQALSNAVLR------------------------------------------DTR 200 (365)
T ss_pred HHHHHHHHHHHHhcccc--cCCCccccccchhHHH------------------------------------------HHH
Confidence 87666555443333221 1110 000000 0000 000
Q ss_pred hhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc----chhHHHHHHhhcCCCcCcccCc
Q 012668 188 DKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQM----STLFVEQGMVMDTSIGSFTIPP 263 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~----~s~~~~~~~~~~~~~~~~~~~~ 263 (458)
+.. +...+.+.+.... .....+...+... ...+..+. .+.+ ....
T Consensus 201 ~~~----------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~ 249 (365)
T TIGR00900 201 EGI----------------------KFVLKNPLLRTLL---LLALLFNLVFAPAIVALFPYVQSKY--LGRG----STHY 249 (365)
T ss_pred hHH----------------------HHHHcCcHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHH--hCCc----hHHH
Confidence 000 0000011111111 1111122222111 11121111 1111 1112
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+.+.....+..++..++..+ +.+| ..+.+.+..+.++.++++....... +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~----l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 299 (365)
T TIGR00900 250 GWVLAAFGLGALLGALLLGL----LGRY-------FKRMALMTGAIFVIGLAILVVGLTP-------------------P 299 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHH-------hchhHHHHHHHHHHHHHHHHHHhhc-------------------h
Confidence 22333333344444444443 3344 2333445566666666665555431 1
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+...+..++.+++.+...+...+++.+..|++.||...|+++....++..+++.+.+.+.
T Consensus 300 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 300 -NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25566778899999999999999999999999999999999999999999999999988765
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-14 Score=143.06 Aligned_cols=85 Identities=15% Similarity=0.288 Sum_probs=75.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+...|...+.+.|++++++ |++++++++...++|..++|.+++++.+..+||+.|++
T Consensus 101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 367788899999999999999999999999998876 99999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q 012668 109 PALFMGFAIAS 119 (458)
Q Consensus 109 ~~i~~~l~~ii 119 (458)
.++..++..+.
T Consensus 175 ~~~~~~~~~~~ 185 (406)
T PRK11551 175 GGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHH
Confidence 87655544443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-14 Score=141.22 Aligned_cols=278 Identities=9% Similarity=0.085 Sum_probs=171.1
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+...+++++++.|+|.+...|...+.+.|.+++++ |+++++++..+.++|..+||++++++.+++||++.+.+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 367788999999999999999999999999998876 99999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
..+..++.+ .+.++ .++.+++++. .+ ++.
T Consensus 184 ~~~~~~~~~---~~~~~-~~~~~~~~~~--------------------------------------------~~--~~~- 212 (392)
T PRK12382 184 TMVLPLLAW---AFNGT-VRKVPAHAGE--------------------------------------------RP--SLW- 212 (392)
T ss_pred HHHHHHHHH---HHHHh-ccCCCCCccc--------------------------------------------Cc--hHH-
Confidence 654332222 11111 1111100000 00 000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRM-FPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLS 267 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 267 (458)
+..|.+.+. .........+........ .+.. +... . ..+...
T Consensus 213 ---------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~-----~~~~---~-~~~~~~ 255 (392)
T PRK12382 213 ---------------------------SVVGLIWKPGLGLALQGVGFAVIGTFVS-LYFA-----SKGW---A-MAGFTL 255 (392)
T ss_pred ---------------------------HHHHHHHHhHHHHHHHHHHHhHHHHHHH-HHHH-----hcCC---c-hhHHHH
Confidence 001111110 000111111111111101 1111 1111 1 111122
Q ss_pred cchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhH
Q 012668 268 SFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIF 347 (458)
Q Consensus 268 ~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 347 (458)
....+..++..++..+ +.+|. ++++.+..+..+.++++...... .+.+
T Consensus 256 ~~~~~~~~~~~~~~g~----l~~r~-------g~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 303 (392)
T PRK12382 256 TAFGGAFVLMRVLFGW----MPDRF-------GGVKVAIVSLLVETVGLLLLWLA---------------------PTAW 303 (392)
T ss_pred HHHHHHHHHHHHHHHH----HHHhc-------CCCeehHHHHHHHHHHHHHHHHc---------------------ccHH
Confidence 2233333444455554 44443 22344566777777776655442 1445
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchh
Q 012668 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHL 427 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
+..+..++.+++++...|...+.+.+..|++.||+..|+++....+|+.+|+.+.+.+.+.. ++
T Consensus 304 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~----------------g~ 367 (392)
T PRK12382 304 VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF----------------GY 367 (392)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------Cc
Confidence 56667888999999988988899999999999999999999999999999999999775321 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 012668 428 DYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 428 ~~~f~~~a~i~~~~~v~~~~~ 448 (458)
...|.+.+++.+++.+..+..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 368 PSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 566777777777776665543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-15 Score=153.08 Aligned_cols=311 Identities=14% Similarity=0.110 Sum_probs=177.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+...+++++++.|+|.+...|...+++.|.+|+++ |++++++++...++|..+||.++|++.+++|||+.|++
T Consensus 88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 367888999999999999999999999999998876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++..+..++..++ ++++.+...|..+............... +..++.+|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~g~~l~~~~~~~~~~~~---------------------~~~~~~~~~~ 217 (485)
T TIGR00711 162 NVPIGIIVVVVAFFILPR---DKPAASENFDFLGLLLLSVGLGSLLYGL---------------------SEGPERGWFD 217 (485)
T ss_pred hhHHHHHHHHHHHHHcCC---ccccccCCCcHHHHHHHHHHHHHHHHHH---------------------hhCCCCCCCC
Confidence 887666555544333332 1122112223332222211110000000 0000001111
Q ss_pred hhhccc---------cccccCCCCCCCcccccchhhHHHHHHH--HHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCc
Q 012668 189 KAAVVS---------DAEIKSGDFSNPWILCTVTQVEELKILI--RMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIG 257 (458)
Q Consensus 189 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 257 (458)
...+.. .... .++..++++..+.+.+. ...............+......+.....+ .....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~s 289 (485)
T TIGR00711 218 SNEILILSITGLVAIIAFV-------VWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQ-VLGYT 289 (485)
T ss_pred chHHHHHHHHHHHHHHHHH-------HHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence 100000 0000 00000000001111110 01111111111222221111111111111 01110
Q ss_pred CcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 012668 258 SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVD 337 (458)
Q Consensus 258 ~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
....+.+.....+..++..++..+ +.+| .++++.+.+|.++.++++.++....
T Consensus 290 --~~~~g~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~g~~~~~~~~~~~~~~~-------------- 342 (485)
T TIGR00711 290 --ALQAGLHILPVGLAPMLSSPIAGR----MGDK-------IDPRKLVTIGLILYAVGFYWRAFTF-------------- 342 (485)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH----HHhh-------cCcHHHHHHHHHHHHHHHHHHhccC--------------
Confidence 111233334444455556666655 3444 3344566778887777777665211
Q ss_pred CCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 338 QNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 338 ~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+...+.++.+...++.++|.++..++....+.+..|++.+|.++|+.+..+.+|+.+|+.+.+.+.+
T Consensus 343 ---~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 343 ---TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1113455666778999999999998888888899999999999999999999999999999888754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=149.92 Aligned_cols=314 Identities=11% Similarity=0.069 Sum_probs=172.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++++++.|+|.+...|...+.+.+.+++++ +|+++++++....++|..+||+++|++.++.||||.|++
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 378889999999999999999999998888875443 399999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
..+..++.+++.+...++- +++++...|..+..........+....+.. . +.....|.-
T Consensus 167 ~~~~~~~~~~l~~~~l~~~---~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~----------------~--~~~~~~~~~ 225 (495)
T PRK14995 167 NVPIVLVVMGLTARYVPRQ---AGRRDQPLNLGHALMLIVAILLLVYSAKTA----------------L--KGFLSLWVT 225 (495)
T ss_pred HHHHHHHHHHHHHHhCCCC---CCCCCCCCChHhHHHHHHHHHHHHHHHHhc----------------c--ccCCchHHH
Confidence 8876666655543333321 111111123322222111100000000000 0 000000000
Q ss_pred h-----hhccccccccCCCCCCCcccccchhhHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCccc
Q 012668 189 K-----AAVVSDAEIKSGDFSNPWILCTVTQVEELKILIR--MFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTI 261 (458)
Q Consensus 189 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 261 (458)
. .......... ++...+++..+.+.+.. ..............+......+.. +.+...+-...
T Consensus 226 ~~~~~~~~~~l~~f~~-------~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~lq~v~g~s~~ 295 (495)
T PRK14995 226 SLTLLTGALLLGLFIR-------TQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQ---ELQFVHGLSPL 295 (495)
T ss_pred HHHHHHHHHHHHHHHH-------HHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHH
Confidence 0 0000000000 00000011111111100 000001111111111111111111 11111100011
Q ss_pred CcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 012668 262 PPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVS 341 (458)
Q Consensus 262 ~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
..+.......+...+..++..+ +.+|. .+++.+..|.++.+++++.+.....
T Consensus 296 ~ag~~~~~~~~~~~~~~~~~g~----l~~r~-------g~~~~~~~g~~~~~~~~~~l~~~~~----------------- 347 (495)
T PRK14995 296 EAGMFMLPVMVASGFSGPIAGI----LVSRL-------GLRLVATGGMALSALSFYGLAMTDF----------------- 347 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHc-------CchHHHHHHHHHHHHHHHHHHHhcC-----------------
Confidence 2222333333444455555555 45553 2334567788877777766554321
Q ss_pred ccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 342 VPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 342 ~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
..+.+......++.|+|.++..++....+.+.+|++.+|..++++++.+++|+.+|..+.+.+.+
T Consensus 348 -~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 348 -STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred -CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12444456678899999999999999999999999999999999999999999999999998854
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=140.21 Aligned_cols=269 Identities=10% Similarity=-0.011 Sum_probs=157.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|++.+...|...+.+.|.+++++ |.+++++......+|..+||.+++++.++.+||+.|++.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 56778899999999999999999999999998776 888999999888999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhh
Q 012668 110 ALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDK 189 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (458)
++..+++.+..+...++.+++++++.+..+ ..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~ 207 (406)
T PRK15402 174 AALAALSFFGLWRAMPETAGRVGEKLSLKE----------------------------------------------LGRD 207 (406)
T ss_pred HHHHHHHHHHHHHhCCCCCccccccccHHH----------------------------------------------HHHH
Confidence 876666555433322211000000000000 0000
Q ss_pred hhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccccc
Q 012668 190 AAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSF 269 (458)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~l 269 (458)
. +.....+.+................+......+..+ ..+ .. ....+.....
T Consensus 208 ~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g--~~--~~~~g~~~~~ 259 (406)
T PRK15402 208 Y----------------------KLVLKNRRFVAGALALGLVSLPLLAWIALSPVILIS--GEQ--LS--SYEYGLLQVP 259 (406)
T ss_pred H----------------------HHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhC--CC--HHHHHHHHHH
Confidence 0 000000111111111000000001111111111111 111 10 1111111111
Q ss_pred hhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHH
Q 012668 270 DVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQ 349 (458)
Q Consensus 270 n~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 349 (458)
..+..++..++.++ +.+| .+..+.+.++.++.+++...+...... ...+++|+
T Consensus 260 ~~~~~~~g~~~~g~----l~~r-------~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------~~~~~~~~ 312 (406)
T PRK15402 260 VFGALIAGNLTLAR----LTSR-------RPLRSLIRMGLWPMVAGLLLAALATVI----------------SSHAYLWL 312 (406)
T ss_pred HHHHHHHHHHHHHH----HHHh-------cCHHHHHHHHHHHHHHHHHHHHHHHHc----------------ccccHHHH
Confidence 11222233333333 4444 334455677877777777776654311 01256677
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 350 IPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 350 i~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
++..++.++|++...+..+...... +++.+|++.+++++.+.++..+|+.+.+.+.
T Consensus 313 ~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 313 TAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8889999999999988887777654 4589999999999999999999999988764
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=135.97 Aligned_cols=287 Identities=16% Similarity=0.175 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+++.++++|++.|+..|.+.+...+...|..|+++ |++++++...+..++..+|.++|.|+.|.+|||+.|++.
T Consensus 100 ~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~i 173 (394)
T COG2814 100 SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAI 173 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHH
Confidence 89999999999999999999999999999999987 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCC--CchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchh
Q 012668 110 ALFMGFAIASFFSGTSLYRFQRPGG--SPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCL 187 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
+...+++++..+...+ ++++++. .++.
T Consensus 174 a~l~ll~~~~~~~~lP--~~~~~~~~~~~~~------------------------------------------------- 202 (394)
T COG2814 174 AVLALLALLLLWKLLP--PSEISGSLPGPLR------------------------------------------------- 202 (394)
T ss_pred HHHHHHHHHHHHHhCC--CccCCCCCCcchh-------------------------------------------------
Confidence 8766666655443332 0111100 0000
Q ss_pred hhhhccccccccCCCCCCCcccccchhhHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCc-ccCcC
Q 012668 188 DKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIR--MFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSF-TIPPA 264 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~ 264 (458)
++.+.+.+ .........+++......++++. ..+.... ++ .-..+
T Consensus 203 ----------------------------~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~---P~L~~v~-g~s~~~vs 250 (394)
T COG2814 203 ----------------------------TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIR---PFLESVA-GFSVSAVS 250 (394)
T ss_pred ----------------------------HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHH---HHHHHcc-CCCHhHHH
Confidence 01111111 11111112222222222222221 1111111 11 11233
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
+...++++..++...+.++ +.+| ++.+-+....++.++.+..+.+.. .
T Consensus 251 ~~Ll~~Gv~~~~Gn~~gGr----l~dr--------~~~~~l~~~~~l~a~~~l~l~~~~--------------------~ 298 (394)
T COG2814 251 LVLLAFGIAGFIGNLLGGR----LADR--------GPRRALIAALLLLALALLALTFTG--------------------A 298 (394)
T ss_pred HHHHHHHHHHHHHHHHHhh----hccc--------cchhHHHHHHHHHHHHHHHHHHhc--------------------c
Confidence 3444455555555555555 4443 222445556667777776666542 2
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+.+..+...++.+++.............+.+ ++.++..++++....++|..+|..+++.+.+.
T Consensus 299 ~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~---------------- 361 (394)
T COG2814 299 SPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA---------------- 361 (394)
T ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 3444444555555555544444444444433 47888999999999999999999999988632
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012668 425 GHLDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
.++....++.+.+.+++.+..+...++.++
T Consensus 362 ~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 362 LGYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 235566777777777666666555544444
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-14 Score=145.20 Aligned_cols=86 Identities=14% Similarity=0.250 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc-cchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA-GWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~-gw~~~F~i 108 (458)
+...+++.+++.|++.+...|...+.+.|++|+++ |+++++++..+.++|.+++|++++++.+.. |||+.|++
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i 203 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence 45678899999999999999999999999999887 999999999999999999999999999884 99999999
Q ss_pred HHHHHHHHHHHHH
Q 012668 109 PALFMGFAIASFF 121 (458)
Q Consensus 109 ~~i~~~l~~ii~~ 121 (458)
.++..++..+.++
T Consensus 204 ~~~~~~~~~~~~~ 216 (465)
T TIGR00894 204 FGIVGCAWSLLWF 216 (465)
T ss_pred hhHHHHHHHHHHH
Confidence 8876655544443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-13 Score=137.70 Aligned_cols=262 Identities=11% Similarity=0.045 Sum_probs=158.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+.+.|++.+...|...++..|+ +++ |+++++......++|..+||+++|++.+++|||..|++
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 4678888889999999999999998888876 223 78889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++..+..+ ..+ +.+|++++.. + . .....++
T Consensus 164 ~~~~~~~~~~~~~-~~~---~~~~~~~~~~-----------------~--------------------~--~~~~~~~-- 198 (382)
T PRK11128 164 LTAGVASMLLGQL-LRP---TIMPQGESRQ-----------------Q--------------------E--SAGWPAW-- 198 (382)
T ss_pred HHHHHHHHHHHHH-ccC---CCCCcccccc-----------------c--------------------c--ccccchH--
Confidence 7765444433322 221 1111110000 0 0 0000000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
++..+.|.+.... ....+....+....+.+.....+.+.+ +...+.+..
T Consensus 199 ------------------------~~i~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~g~s----~~~~g~~~~ 247 (382)
T PRK11128 199 ------------------------KALLKEPTVWRFL---LCVSLLQGSHAAYYGFSAIYWQAAGYS----ASTIGYLWS 247 (382)
T ss_pred ------------------------HHHHcChhHHHHH---HHHHHHHHHhHhHHHHHHHHHHHCCCC----HhHHHHHHH
Confidence 0011112221111 112222222222222222211111111 111233334
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012668 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
++.+..++...+.++ +.+| .+.++.+.++.++.+++++.+...+ +.++
T Consensus 248 ~~~~~~~~~~~~~g~----l~~r-------~~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~ 295 (382)
T PRK11128 248 LGVVAEVLIFAFSNR----LFRR-------WSARDLLLLSAICGVVRWGLMGSTT---------------------ALPW 295 (382)
T ss_pred HHHHHHHHHHHHHHH----HHHH-------CCHHHHHHHHHHHHHHHHHHHHhhh---------------------hHHH
Confidence 444444444444444 4555 4445667778888777776665432 5666
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHH-HHHHHHHHHhhHHhhhhhh
Q 012668 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSL-LTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~-~~~~ig~~ig~~l~~~~~~ 407 (458)
+++..++.++++++..+....++.+. |++.++..+++.+ +.+.+|..+|+.+.+.+.+
T Consensus 296 ~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 296 LIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999999999998887 5556688888886 6677888899999997763
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-14 Score=162.00 Aligned_cols=288 Identities=11% Similarity=-0.011 Sum_probs=162.5
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+.+.|...+++.|++++++ |++++++..++.++|.++||+++|++.+..||++.|.+
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 468889999999999999999999999999999887 99999999999999999999999999999999999955
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++++++.+...+. +++...... +.+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------------------------------------~~~~~~ 212 (1140)
T PRK06814 180 LMGIAVLGWLASLFIPKT----GNAAPDLKI-------------------------------------------DRNIIR 212 (1140)
T ss_pred HHHHHHHHHHHHhhCCCC----CCCCCCCee-------------------------------------------ccchHH
Confidence 555444444443332221 111100000 000000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
... . .+ +.+...+.++... .....++.......+.+..+... .++.-....+.+..
T Consensus 213 ~~~----~---------~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~---~~g~~~~~~g~~~~ 268 (1140)
T PRK06814 213 STI----T---------LL-----KYAKADKRIWLAI---LGISWFWLVGAVVLSQLPLLAKE---TLGGDENVATLFLA 268 (1140)
T ss_pred HHH----H---------HH-----HHHhcCchHHHHH---HHHHHHHHHHHHHHHHhHHHHHH---HcCCchHHHHHHHH
Confidence 000 0 00 0000011111111 11112222222111111111111 11100112333445
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-CCCCccchhH
Q 012668 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVD-QNVSVPISIF 347 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~ 347 (458)
...+..++...+..+ +.++. ...+.+..+.++.+++.+.+.+..... . .....+.. ..-....+.+
T Consensus 269 ~~~~g~~ig~~~~g~----l~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 335 (1140)
T PRK06814 269 VFSVGVAVGSFLASK----LSEGR-------ITLLYVPIGALLMGLFGLDLAFASSSV-P-AEPAQLKSILVFLSKRHGW 335 (1140)
T ss_pred HHHHHHHHHHHHHHH----HhCCc-------eeeeeehHHHHHHHHHHHHHHhccccc-c-cccccccchhhhhcccccH
Confidence 555555566655555 33222 111233344444444333332210000 0 00000000 0000002445
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
++++..++.|++.++..+...+++.+.+|++.+|+++|++++...+|..+++.+.+.+.
T Consensus 336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778889999999999999999999999999999999999999999999999988775
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=141.91 Aligned_cols=84 Identities=20% Similarity=0.417 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++++++.|++.+...|...+++.|++++++ |+++++++....++|..+||.+++++.+++|||+.|++.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 45588999999999999999999999999999977 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 012668 110 ALFMGFAIAS 119 (458)
Q Consensus 110 ~i~~~l~~ii 119 (458)
++..++..++
T Consensus 158 ~~~~~~~~il 167 (352)
T PF07690_consen 158 AILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHH
T ss_pred cchhhhhhhh
Confidence 9877777664
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-13 Score=139.40 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++++++.|+|.+...|...+.+.|.+|+++ |+++++++....++|..+||.++|++.++.|||+.|+++
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 67788899999999999999999999999998765 899999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 012668 110 ALFMGFAIASFFS 122 (458)
Q Consensus 110 ~i~~~l~~ii~~~ 122 (458)
.+...+..+....
T Consensus 171 ~~~~~l~~~~~~~ 183 (471)
T PRK10504 171 IPVGIIGAIATLM 183 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 8766655554433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-14 Score=140.92 Aligned_cols=263 Identities=14% Similarity=0.106 Sum_probs=155.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+.+.+.+.+.+.|...+...|.+++++ |++++++.+...|+|.++||.+++++.+ .||+..|++.
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~ 167 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA 167 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence 45566677778888888889999999999998765 9999999999999999999999999875 7999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhh
Q 012668 110 ALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDK 189 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (458)
++..++.++...+..++ ++|++++..+ + . + +.
T Consensus 168 ~~~~~i~~i~~~~~~~~---~~~~~~~~~~---------~---------------------------~--------~-~~ 199 (395)
T PRK10054 168 AICSAFPLVFIQIWVQR---SEKAIATETG---------S---------------------------V--------W-SP 199 (395)
T ss_pred HHHHHHHHHHHHHHHhc---cccccccchh---------h---------------------------h--------h-hh
Confidence 87776665443222221 1111100000 0 0 0 00
Q ss_pred hhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhh-cCCCcCcccCcCcccc
Q 012668 190 AAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVM-DTSIGSFTIPPASLSS 268 (458)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~l~~ 268 (458)
++....|.+.... ....+....+....+.+....... +.... ....+.+..
T Consensus 200 -----------------------~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~ 251 (395)
T PRK10054 200 -----------------------SVLLQDKALLWFT---CSGFLASFVSGAFASCISQYVMVVADSDFA--EKVVAVVLP 251 (395)
T ss_pred -----------------------hhhccCceehHHH---HHHHHHHHHHHHhhhhHHHHHHHhcccchH--HHHHHHHHH
Confidence 0000011111111 111111111111111111111111 11100 111122333
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012668 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
.+....+..++..++ +.+| .++++.+..|.++.++++..+.... .+.+.
T Consensus 252 ~~~~~~~~~~~~~g~----~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~ 300 (395)
T PRK10054 252 VNAAMVVSLQYSVGR----RLNA-------ANIRPLMTAGTLCFVIGLVGFIFSG--------------------NSLLL 300 (395)
T ss_pred hhhhheeeehhHHHH----HHcc-------CCchhHHHHHHHHHHHHHHHHHHcc--------------------hHHHH
Confidence 333333333333333 3333 3444566777777777776655421 13444
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+.+..++.++|+....|...+.+.+.+|++++|.+.+..+ ...+|..+|+.+.+.+.+
T Consensus 301 ~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~ 358 (395)
T PRK10054 301 WGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT 358 (395)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 5567889999999999999999999999999999988765 566899999999998864
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-13 Score=138.15 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=72.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.|...|...+.+.|++++++ |++++++++.+.++|..++|.+++++.+.+|||+.|++
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 356777788889999999999999999999998876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 012668 109 PALFMGFA 116 (458)
Q Consensus 109 ~~i~~~l~ 116 (458)
.++..++.
T Consensus 183 ~~i~~~~~ 190 (434)
T PRK11663 183 AGIIAIVV 190 (434)
T ss_pred HHHHHHHH
Confidence 87655443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-14 Score=144.55 Aligned_cols=307 Identities=11% Similarity=0.023 Sum_probs=167.5
Q ss_pred hhHHHHHH-HHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 30 QYAVFFFG-LYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~-l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
+.+.+++. +++.|++.|...+...+.+.++++ ++ |+++.++.+.+.++|..++|++++++.+.+|||+.|++
T Consensus 106 ~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~ 178 (455)
T TIGR00892 106 NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLI 178 (455)
T ss_pred hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 45555543 578899999876777788888884 44 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..+++.+..++.++.-.. ++..+..+ . ...+..+ ..+..+..+..+
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~---------~---~~~~~~~-----------------~~~~~~~~~~~~ 227 (455)
T TIGR00892 179 LGGLLLHCCVCGALMRPVGPS--QRVSKSKS---------K---EGLPPDG-----------------STKKLSKKSTAE 227 (455)
T ss_pred HHHHHHHHHHHHHHhCCCCcc--cccccccc---------c---ccCCCCC-----------------ccccccccchhh
Confidence 988766655544444331100 00000000 0 0000000 000000000000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
.. ..+. ..+ ....+.+ .............+....+.+..... +.... ....+.+..
T Consensus 228 ~~--------------~~~~--~~~-~~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s--~~~~g~~~~ 283 (455)
T TIGR00892 228 KI--------------NRFL--DFS-LFTHRGF---LVYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD--EYEAAFLLS 283 (455)
T ss_pred hh--------------hhhc--chH-HhcCchH---HHHHHHHHHHHHHccchHHHHHHHHH--HcCCC--HHHHHHHHH
Confidence 00 0000 000 0001111 11111111222222222222222111 11111 112233344
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012668 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQR--MGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~--~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
+..+..++..|+..++. +|.. .++.++ +..+.++.++++++.... .+.
T Consensus 284 ~~~~~~~~~~~~~g~l~----d~~~-----~~~~~~~~~~~~~~~~~l~~ll~~~~---------------------~~~ 333 (455)
T TIGR00892 284 IIGFVDIFARPSCGLIA----GLKW-----IRPHVQYLFSFALLFNGLTHLLCALA---------------------GDY 333 (455)
T ss_pred HHHHHHHHHHHHHHHHh----cccc-----cCHHHHHHHHHHHHHHHHHHHHHHHh---------------------chH
Confidence 44555556666666533 2211 122222 233334344443333221 255
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
+++++..++.|++.+...+...+.+.+..|++.+|..+|+++...++|+.+|+.+.+.+.+.. ++
T Consensus 334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~---------------g~ 398 (455)
T TIGR00892 334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT---------------KN 398 (455)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc---------------CC
Confidence 667778889999999999999999999999999999999999999999999999999765321 12
Q ss_pred hHHHHHHHHHHHHHHHH
Q 012668 427 LDYFFWLLAGLSIFNML 443 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v 443 (458)
+...|.+.+++.+++.+
T Consensus 399 ~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 399 YKYIFYASGSIVVSAGL 415 (455)
T ss_pred cchHHHHhhHHHHHHHH
Confidence 34556666655555444
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-13 Score=134.04 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=69.7
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccch--hhHHHHHHHHHHHHHhHhhhhccccccchhhh
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSF--FNWFYFSINIGALISSSLIVWIQDNAGWGLGF 106 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~--~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F 106 (458)
.+.+.+++.+.+.+.+.+...|...++..|..++++ |.++ .++.+...++|..+||.+++++.+++|||+.|
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f 158 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMF 158 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHH
Confidence 356777788888888888888988888888876554 4433 68888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 012668 107 GIPALFMGFAIASFF 121 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~ 121 (458)
++.++..++..+..+
T Consensus 159 ~~~~~~~~~~~~~~~ 173 (375)
T TIGR00899 159 LTAALAFVLCGVLVW 173 (375)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998876665555433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-13 Score=132.81 Aligned_cols=264 Identities=20% Similarity=0.249 Sum_probs=183.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+...+++.+++.|++.+...|...+++.|.+++++ |++++++.+...++|..+||.+++++.+..+||+.|++
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 367888999999999999999999999999999876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++..+...+..
T Consensus 159 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 174 (352)
T cd06174 159 LAILGLLLALLLLFLL---------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 8876666555432211
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
|.+.... ......................+. ... .....+.+..
T Consensus 175 ------------------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~ 218 (352)
T cd06174 175 ------------------------------RLLLLLA---LAFFLLSFGYYGLLTYLPLYLQEV-LGL--SAAEAGLLLS 218 (352)
T ss_pred ------------------------------HHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHh-cCC--CHHHHHHHHH
Confidence 0000001 011111111111111111111110 000 0112334444
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhH
Q 012668 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQ-RMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIF 347 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~-~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 347 (458)
...+..++..++..+ +.+|.++ ++ .+..+.++..+++......+ +.+
T Consensus 219 ~~~~~~~i~~~~~~~----~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~---------------------~~~ 266 (352)
T cd06174 219 LFGLGGILGALLGGL----LSDRLGR-------RRLLLLIGLLLAALGLLLLALAP---------------------SLA 266 (352)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHh-------hhHHHHHHHHHHHHHHHHHHHhc---------------------cHH
Confidence 555555566666665 4444322 23 56778888888877766542 466
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchh
Q 012668 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHL 427 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
...+..++.+++++...+...+++.+..|++.|+..+|+++...++|..+++.+.+.+.+. .++
T Consensus 267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~----------------~~~ 330 (352)
T cd06174 267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT----------------GGY 330 (352)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------cCc
Confidence 7788999999999999999999999999999999999999999999999999999977531 123
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012668 428 DYFFWLLAGLSIFNMLLYV 446 (458)
Q Consensus 428 ~~~f~~~a~i~~~~~v~~~ 446 (458)
...|.+.+++.+++.+.+.
T Consensus 331 ~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 331 GGVFLILAALALLAALLLL 349 (352)
T ss_pred chHHHHHHHHHHHHHHHhe
Confidence 4567777777776666543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-13 Score=135.21 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++.+++.|+|.+.. +.....+.+++|+++ |+++++++..+.++|.++++++++++.+++|||+.|++.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 6788999999999999964 555566689998766 999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHH
Q 012668 110 ALFMGFAIASF 120 (458)
Q Consensus 110 ~i~~~l~~ii~ 120 (458)
++..++..++.
T Consensus 151 ~~l~~~~~~~~ 161 (368)
T TIGR00903 151 AAVAAAGIILV 161 (368)
T ss_pred HHHHHHHHHHH
Confidence 76554444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.9e-13 Score=134.34 Aligned_cols=83 Identities=16% Similarity=0.285 Sum_probs=75.6
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.|...|...+++.|++++++ |+++++++..+.++|..+||++++++.+.+|||+.|++
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 478899999999999999999999999999998876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 012668 109 PALFMGFAI 117 (458)
Q Consensus 109 ~~i~~~l~~ 117 (458)
.++..++..
T Consensus 180 ~~~l~~~~~ 188 (394)
T PRK10213 180 AAVMGVLCI 188 (394)
T ss_pred HHHHHHHHH
Confidence 876555443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-13 Score=136.96 Aligned_cols=87 Identities=17% Similarity=0.398 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhh---hhccccccchhhh
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLI---VWIQDNAGWGLGF 106 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~---g~l~~~~gw~~~F 106 (458)
+.+.+++++++.|+|.|...+...++++|++++++ |++++++++.+.++|.+++|.++ +++.+..|||+.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 45688999999999999999999999999999887 99999999999999999999999 8877889999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 012668 107 GIPALFMGFAIASFFS 122 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~~ 122 (458)
++.++..++.++..++
T Consensus 200 ~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 200 GLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9976655555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-13 Score=132.66 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=75.1
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.|...|...+.+.|++++++ |+++++++..+.++|..+||.+++++.+..|||+.|++
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 478899999999999999999998999999988765 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012668 109 PALFMGFAIAS 119 (458)
Q Consensus 109 ~~i~~~l~~ii 119 (458)
.++..++..+.
T Consensus 163 ~~~~~~~~~~~ 173 (382)
T PRK10091 163 IAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHH
Confidence 88765555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=132.55 Aligned_cols=285 Identities=13% Similarity=0.082 Sum_probs=164.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc-cchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA-GWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~-gw~~~F~i 108 (458)
+...+++++++.|+|.|...+...+.+.|+++ ++ |+++++++..+.+.|..+|+.+++++.++. +||+.|.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 67788999999999999999999999999986 55 899999999999999999999999998875 89998876
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++.++.++...+ ++|++++ .+ + ..
T Consensus 169 ~~~~~~~~~~~~~~~~~----~~~~~~~------------------~~--------------------~---~~------ 197 (393)
T PRK09705 169 WALPAVVALFAWWWQSA----REVASSH------------------KT--------------------T---TT------ 197 (393)
T ss_pred HHHHHHHHHHHHHHHhc----CCCcccc------------------CC--------------------C---cC------
Confidence 55544443333322211 1111100 00 0 00
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMF-PIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLS 267 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 267 (458)
+.+.. .+.+ .+... ........++......+.++ . +.+.+ ....+.+.
T Consensus 198 -----------------~~~~l-----~~~~-~~~l~~~~~~~~~~~~~~~~~lp~~l-~---~~g~s----~~~ag~~~ 246 (393)
T PRK09705 198 -----------------PVRVV-----FTPR-AWTLGVYFGLINGGYASLIAWLPAFY-I---EIGAS----AQYSGSLL 246 (393)
T ss_pred -----------------Ccccc-----cCHh-HHHHHHHHHHHHHHHHHHHHHHHHHH-H---HcCCC----hhhhhHHH
Confidence 00000 0111 11111 11111111111111111111 1 11111 11122333
Q ss_pred cchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhH
Q 012668 268 SFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIF 347 (458)
Q Consensus 268 ~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 347 (458)
.+..+..++..++.++ +.+| .++.+.+.++..+.++++..+.... .+..
T Consensus 247 ~~~~i~~i~g~~~~g~----l~~r-------~~~~~~~~~~~~l~~~~~~~~~~~~--------------------~~~~ 295 (393)
T PRK09705 247 ALMTLGQAAGALLMPA----MARH-------QDRRKLLMLALVLQLVGFCGFIWLP--------------------LQLP 295 (393)
T ss_pred HHHHHHHHHHHHHHHH----HHhh-------ccchHHHHHHHHHHHHHHHHHHHcc--------------------chHH
Confidence 3444444444444444 4444 3333556667777666665544321 1111
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012668 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSP-DAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP-~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
.. ..++.+++.+...|.....+.+..| ++.+|..+|+.+....++..+++.+.+.+.+.. ++
T Consensus 296 ~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~---------------g~ 358 (393)
T PRK09705 296 VL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS---------------GN 358 (393)
T ss_pred HH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------CC
Confidence 11 2345677777888887777777774 678999999999999999999999999876432 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Q 012668 427 LDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
+...|.+.++.+++..++...+.++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 359 YLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455666666666666655444333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-13 Score=136.55 Aligned_cols=268 Identities=17% Similarity=0.138 Sum_probs=169.6
Q ss_pred CchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhH
Q 012668 28 PAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFG 107 (458)
Q Consensus 28 ~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~ 107 (458)
..+++.+++..++.|++.+...|.-++++.+..|+++ ..++.++.....|+.-++||.++|.+....|-.+.|.
T Consensus 100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ 173 (524)
T PF05977_consen 100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL 173 (524)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 3467888899999999999999999999999999877 8999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchh
Q 012668 108 IPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCL 187 (458)
Q Consensus 108 i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
++++..++.++.+...++.. +++..+.....+.+....+ +
T Consensus 174 inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~r------------------------------------y- 213 (524)
T PF05977_consen 174 INALSFLISILALLRWKPPP---PPSSLPRERFFSALREGLR------------------------------------Y- 213 (524)
T ss_pred HHHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHHH------------------------------------H-
Confidence 99988777665554443321 1111110000000000000 0
Q ss_pred hhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HhhcCCCcCcccCcCcc
Q 012668 188 DKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQG-MVMDTSIGSFTIPPASL 266 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~~~l 266 (458)
+.+.+.+...+.. ..++..........+.... ...+.. ....+.+
T Consensus 214 ---------------------------v~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a~~~l~~~----a~~yGll 259 (524)
T PF05977_consen 214 ---------------------------VRSSPPLRSVLLR---SFLFNLFASAVWALLPLFARDVLGGG----ASGYGLL 259 (524)
T ss_pred ---------------------------HhcchHHHHHHHH---HHHHHHhhhHHHHhhhHHHHHHhCCc----HHHHHHH
Confidence 0001111111111 1111111111111122221 111111 1111222
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012668 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
...-++..++.+ +..+..+| + .+..+.+..+.++.+++++.+++.. +.
T Consensus 260 ~a~~gvGai~Ga-----l~~~~l~~---~---~~~~~lv~~~~~~~a~~~~~lal~~---------------------~~ 307 (524)
T PF05977_consen 260 LAAFGVGAILGA-----LLLPRLRR---R---LSSRRLVLLASLLFALALLLLALSP---------------------SF 307 (524)
T ss_pred HHHHHHHHHHHH-----HHHHHhhc---c---cCcchhhHHHHHHHHHHHHHHhcch---------------------HH
Confidence 222222222222 22222222 2 4444566777777777777766642 56
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+...+..++.|++........++.+++.+|+.++|+.++++.+....+..+|..+.+.+.+
T Consensus 308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 308 WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788999999999999999999999999999999999999999999999999998764
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=131.76 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=67.6
Q ss_pred HHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHHHHH
Q 012668 35 FFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMG 114 (458)
Q Consensus 35 ~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~~ 114 (458)
++.+++.|++.|...|...+++.|++|++| |++++++.....++|..+||.++|++.+. .|+..|++.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 678889999999999999999999999876 99999999999999999999999999885 58888887766554
Q ss_pred HHHHH
Q 012668 115 FAIAS 119 (458)
Q Consensus 115 l~~ii 119 (458)
++.+.
T Consensus 165 ~~~~~ 169 (393)
T PRK11195 165 LAALF 169 (393)
T ss_pred HHHHH
Confidence 44443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=130.09 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=77.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+...+...+++.|.+|+++ |++++++++...++|..+||.+++++.++.|||+.|++
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 367788899999999999999999999999999776 99999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHh
Q 012668 109 PALFMGFAIASFFS 122 (458)
Q Consensus 109 ~~i~~~l~~ii~~~ 122 (458)
.++..++..+..++
T Consensus 165 ~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 165 LSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHH
Confidence 87766655554433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-12 Score=131.80 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=76.6
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc-cccchhhhH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD-NAGWGLGFG 107 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~-~~gw~~~F~ 107 (458)
.+.+.+++.+++.+++.+...+...+++.|++|++| |+++.++...+.++|.++++.+++++.+ ..|||..|+
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~ 178 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW 178 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 467778888899999999999999999999999876 9999999999999999999999999998 579999999
Q ss_pred HHHHHHHHHHHHHHh
Q 012668 108 IPALFMGFAIASFFS 122 (458)
Q Consensus 108 i~~i~~~l~~ii~~~ 122 (458)
+.++..++..+..++
T Consensus 179 i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 179 LMAALLIPCIIATLL 193 (491)
T ss_pred HHHHHHHHHHHHHHh
Confidence 988766665554433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-12 Score=131.90 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc--------cccc
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ--------DNAG 101 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~--------~~~g 101 (458)
....+++++++.|++.|+..|...++++|++|+++ |+++++++..+..+|.++++.+++.+. +.+|
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 192 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence 45677899999999999999999999999999887 999999999999999999988876543 4579
Q ss_pred chhhhHHHHHHHHHHHHHHHh
Q 012668 102 WGLGFGIPALFMGFAIASFFS 122 (458)
Q Consensus 102 w~~~F~i~~i~~~l~~ii~~~ 122 (458)
||+.|++.++..++..+..++
T Consensus 193 Wr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 193 WRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHc
Confidence 999999987766665544433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-12 Score=129.05 Aligned_cols=85 Identities=9% Similarity=0.166 Sum_probs=71.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc-ccccchhhhH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ-DNAGWGLGFG 107 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~-~~~gw~~~F~ 107 (458)
.+...+++.+.+.|++.|...+...+.+.|++|+++ |+++++..+...++|..++|.+.+++. +..|||+.|.
T Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 367788899999999999999999999999997765 899999999999999999999988875 4679999999
Q ss_pred HHHHHHHHHHHH
Q 012668 108 IPALFMGFAIAS 119 (458)
Q Consensus 108 i~~i~~~l~~ii 119 (458)
+.++..++..+.
T Consensus 167 ~~~~~~~~~~~~ 178 (394)
T PRK03699 167 CIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHH
Confidence 877655554443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-12 Score=128.63 Aligned_cols=86 Identities=12% Similarity=0.136 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhc--cchhhHHHHHHHHHHHHHhHhhhhccccccchhhhH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKK--GSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFG 107 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R--~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~ 107 (458)
+.+.+++...+.+...+...|...++..|+.++++ | ....++...+.++|.++||++++++.+++|||+.|+
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~ 177 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence 45555444444444455678888888888775544 3 234578889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 012668 108 IPALFMGFAIASFF 121 (458)
Q Consensus 108 i~~i~~~l~~ii~~ 121 (458)
+.++..++..+...
T Consensus 178 ~~~~~~~~~~~~~~ 191 (393)
T PRK15011 178 SAAVAFIVCGVMVW 191 (393)
T ss_pred HHHHHHHHHHHHHH
Confidence 98876655554433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-12 Score=124.62 Aligned_cols=85 Identities=15% Similarity=0.240 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|++.+...+...+++.|.+++++ |++++++++...++|..++|.+++++.+..|||+.|++.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 56778899999999999999999999999998776 999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 012668 110 ALFMGFAIASF 120 (458)
Q Consensus 110 ~i~~~l~~ii~ 120 (458)
++..++..+..
T Consensus 152 ~~~~~~~~~~~ 162 (377)
T PRK11102 152 ALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHH
Confidence 77665554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-12 Score=133.59 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=73.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc---cchhh
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA---GWGLG 105 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~---gw~~~ 105 (458)
.+.+.+++.+++.|++.|...|...+.++|++|+++ |+++++++..+.++|.++++++..++.+.. +||..
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 478889999999999999999999999999999987 999999999999999999999988876653 69999
Q ss_pred hHHHHHHHHHHHHH
Q 012668 106 FGIPALFMGFAIAS 119 (458)
Q Consensus 106 F~i~~i~~~l~~ii 119 (458)
|.+.++..++..++
T Consensus 194 f~~~g~~~~~~~i~ 207 (467)
T PRK09556 194 FIFPSIIALIIGFI 207 (467)
T ss_pred HHHHHHHHHHHHHH
Confidence 98877655544333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-12 Score=127.19 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|++.+...|...+++.|++++++ |+++++++..+.++|..++|.+++++.++.||++.|++.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 56778899999999999999999999999998776 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 012668 110 ALFMGFAIAS 119 (458)
Q Consensus 110 ~i~~~l~~ii 119 (458)
++...+..++
T Consensus 178 ~~~~~~~~~~ 187 (398)
T TIGR00895 178 GIAPLLLLLL 187 (398)
T ss_pred hhHHHHHHHH
Confidence 6544444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-11 Score=126.13 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=74.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++++++.|++.+...+...+.+.|.+++++ |.++++++....++|..+||++++++.++.|||+.|++
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 377888999999999998777777888999998876 89999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHH
Q 012668 109 PALFMGFAIAS 119 (458)
Q Consensus 109 ~~i~~~l~~ii 119 (458)
.++..+++.+.
T Consensus 176 ~~~~~~i~~~~ 186 (413)
T PRK15403 176 IAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHH
Confidence 88766666554
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=129.18 Aligned_cols=287 Identities=13% Similarity=0.047 Sum_probs=162.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++++.+.|+|.+...+.....+.++++ ++ |+++.+++..+.++|..+++.+.+++.+..|||+.|++
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 367888899999999999888888888888886 34 89999999999999998877777777777899999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++..+..++..++ +|++.. . +.++. ..++.++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~----~~~~~~-~-----------------~~~~~-------------------~~~~~~~~- 199 (377)
T TIGR00890 162 MGIIFLLVIVLGAFLIGY----PPGQLI-K-----------------TNIEV-------------------SVKDYTVW- 199 (377)
T ss_pred HHHHHHHHHHHHHHheec----Cchhcc-c-----------------cCccc-------------------chhhhhHH-
Confidence 887666555443332221 111000 0 00000 00000000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
+....+.+........ ............+..... +.... ....+.+..
T Consensus 200 -------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~ 247 (377)
T TIGR00890 200 -------------------------EMLRTPQFWVLYLSFF---LNAVSGLLLIGLYKPYGQ--SLGLS--DGFLVLAVS 247 (377)
T ss_pred -------------------------HHHcCccHHHHHHHHH---HHhHHHHHHHHHHHHHHH--HcCCC--HHHHHHHHH
Confidence 0000011111111111 111111111111111111 11110 111223334
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012668 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
+..+..++..++..+ +.+|.+ +++.+.++.++.++++....... ..+.+.
T Consensus 248 ~~~~~~~~~~~~~g~----l~dr~g-------~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~ 297 (377)
T TIGR00890 248 ISSIFNGGGRPFLGA----LSDKIG-------RQKTMSIVFGISAVGMAAMLFIP-------------------MLNDVL 297 (377)
T ss_pred HHHHHHHHHHHHHHH----HHHHHh-------hhhhhhHHHHHHHHHHHHHHHcc-------------------cchhHH
Confidence 444444455555555 344432 22345666666777666554432 012222
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhH
Q 012668 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLD 428 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
++...++.+++.+...+...+++.+..|++.||...|+.+....+|..+++.+.+.+.+.. ++.
T Consensus 298 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~ 361 (377)
T TIGR00890 298 FLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI----------------GFE 361 (377)
T ss_pred HHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh----------------chh
Confidence 3344566677777677777888999999999999999999999999999999998765321 245
Q ss_pred HHHHHHHHHHHHHH
Q 012668 429 YFFWLLAGLSIFNM 442 (458)
Q Consensus 429 ~~f~~~a~i~~~~~ 442 (458)
..|.+.+++++++.
T Consensus 362 ~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 362 YTFIVTGAFALTSL 375 (377)
T ss_pred hHHHHHHHHHHHhc
Confidence 66666666655543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-12 Score=129.73 Aligned_cols=77 Identities=16% Similarity=0.393 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++++.+.|+|.|...+...+++.|++++++ |+++.+++..+.++|.+++|.+++++.+.+|||+.|++
T Consensus 104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 367888999999999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred HHH
Q 012668 109 PAL 111 (458)
Q Consensus 109 ~~i 111 (458)
.++
T Consensus 178 ~~~ 180 (426)
T PRK12307 178 GLL 180 (426)
T ss_pred HHH
Confidence 654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-12 Score=126.36 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=74.6
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc-------
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG------- 101 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g------- 101 (458)
.+.+.++...++.+++.+...|...+++.|++|+++ |+++.++...+.++|.++++.+++++.+..|
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~ 154 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT 154 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 345556666667888999999999999999998776 9999999999999999999999999988888
Q ss_pred -chhhhHHHHHHHHHHHHHHHh
Q 012668 102 -WGLGFGIPALFMGFAIASFFS 122 (458)
Q Consensus 102 -w~~~F~i~~i~~~l~~ii~~~ 122 (458)
||+.|++.++..++..++.++
T Consensus 155 ~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 155 LWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877666655443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.5e-12 Score=128.24 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHH-HHHhHhhhhccccccchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGA-LISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~-~igp~l~g~l~~~~gw~~~F~i 108 (458)
+...+++.+++.|++.|...|.....+.|++++++ |++++++++.+.++|. +++|+++..+....|||+.|++
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 56677888999999999999988899999998876 9999999999999986 5566654444344599999999
Q ss_pred HHHHHHHHHHH
Q 012668 109 PALFMGFAIAS 119 (458)
Q Consensus 109 ~~i~~~l~~ii 119 (458)
.++..++..++
T Consensus 193 ~~~~~~~~~~l 203 (452)
T PRK11273 193 PAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHH
Confidence 87665554433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-11 Score=121.91 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=60.5
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccch
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWG 103 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~ 103 (458)
.+.+.+++.+++.|++.+...|...+.+.|..++++ |+++++++....++|..+||.+++++.+...|+
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 92 VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 367888999999999999999998888888887765 999999999999999999999999998764333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-11 Score=124.10 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc--------cccc
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ--------DNAG 101 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~--------~~~g 101 (458)
++..+++.|++.|+|.|+..|...+++.|++|+++ |+++.++.+.+.+.|.++++.+++.+. +.+|
T Consensus 123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 196 (432)
T PRK10406 123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG 196 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence 34578899999999999999999999999999887 999999999999999999988766554 2579
Q ss_pred chhhhHHHHHHHHHH
Q 012668 102 WGLGFGIPALFMGFA 116 (458)
Q Consensus 102 w~~~F~i~~i~~~l~ 116 (458)
||+.|++.++..++.
T Consensus 197 Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 197 WRIPFALGAVLAVVA 211 (432)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999877754443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-12 Score=122.57 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=78.1
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhh--hhccccccchhhh
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLI--VWIQDNAGWGLGF 106 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~--g~l~~~~gw~~~F 106 (458)
.+.+.+.+-..+.|.-.|.-.|.+..+++.+|+.+| |++..+++..+.|+|..+.|++. +++..+++||..|
T Consensus 115 ~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f 188 (448)
T COG2271 115 PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAF 188 (448)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHH
Confidence 377888888899999999999999999999999998 99999999999999999999999 9999999999999
Q ss_pred HHHHHHHH-HHHHHHHhc
Q 012668 107 GIPALFMG-FAIASFFSG 123 (458)
Q Consensus 107 ~i~~i~~~-l~~ii~~~~ 123 (458)
++++++.+ ++++.++..
T Consensus 189 ~~pgiiaiival~~~~~~ 206 (448)
T COG2271 189 YFPGIIAIIVALILLFLL 206 (448)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 99986444 444444443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-11 Score=126.65 Aligned_cols=84 Identities=15% Similarity=0.197 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|++.+...|...+++.|++++++ |+++.+++..+..+|.+++|.+++++.+ ||+.|++.
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 67889999999999999999999999999999887 9999999999999999999999877653 99999998
Q ss_pred HHHHHHHHHHHHh
Q 012668 110 ALFMGFAIASFFS 122 (458)
Q Consensus 110 ~i~~~l~~ii~~~ 122 (458)
++..++..+..++
T Consensus 250 ~i~~~~~~~~~~~ 262 (505)
T TIGR00898 250 SLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHHHHh
Confidence 8766655555433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-11 Score=123.20 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc--------ccccchh
Q 012668 33 VFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ--------DNAGWGL 104 (458)
Q Consensus 33 ~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~--------~~~gw~~ 104 (458)
.+++.+.+.|++.|+..|...+.+.|++|+++ |++..+....+..+|.+++..+.+++. +++|||+
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~ 200 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI 200 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence 57889999999999999999999999999877 999999999999999999887777664 3579999
Q ss_pred hhHHHHHHHH
Q 012668 105 GFGIPALFMG 114 (458)
Q Consensus 105 ~F~i~~i~~~ 114 (458)
.|++.++..+
T Consensus 201 ~f~~~~~~~l 210 (438)
T PRK09952 201 PFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHH
Confidence 9998876543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.6e-12 Score=125.06 Aligned_cols=82 Identities=12% Similarity=0.248 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc--------ccccch
Q 012668 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ--------DNAGWG 103 (458)
Q Consensus 32 ~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~--------~~~gw~ 103 (458)
..+++++++.|+|.+...+...+++.|++++++ |+++.++...+.++|.++++++++.+. +.++||
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 357889999999999999999999999999887 999999999999999999999887653 357999
Q ss_pred hhhHHHHHHHHHHHHH
Q 012668 104 LGFGIPALFMGFAIAS 119 (458)
Q Consensus 104 ~~F~i~~i~~~l~~ii 119 (458)
+.|.+.++..+++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 171 IPFLVSAVLVLIGLYL 186 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887755554433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-11 Score=124.03 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=74.1
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc------cccc
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD------NAGW 102 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~------~~gw 102 (458)
.+...+++.+++.|++.|...|...+.+.+++|+++ |+++++++..+.++|..++|.+++++.+ ..||
T Consensus 94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw 167 (412)
T TIGR02332 94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGW 167 (412)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch
Confidence 367888999999999999999999999999999876 9999999999999999999999999864 4699
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 012668 103 GLGFGIPALFMGFAIASF 120 (458)
Q Consensus 103 ~~~F~i~~i~~~l~~ii~ 120 (458)
|+.|++.++..++..++.
T Consensus 168 r~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 168 QWLFLLEGFPSVILGVMT 185 (412)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999876555443333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-11 Score=138.51 Aligned_cols=270 Identities=12% Similarity=0.063 Sum_probs=153.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc--------c-
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN--------A- 100 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~--------~- 100 (458)
+.+.+++.+++.|++.+...|...+++.|++++++ |+++++++..+.++|.++||++++++.+. +
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~ 175 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL 175 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 57888999999999999999999999999999877 99999999999999999999999999875 2
Q ss_pred cchhhhHHHHHHHH-HHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccc
Q 012668 101 GWGLGFGIPALFMG-FAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIE 179 (458)
Q Consensus 101 gw~~~F~i~~i~~~-l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (458)
+|++.+.+.++... ++++..+.. ++ .|..++... ++. .
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~------------------~~~----------------~-- 214 (1146)
T PRK08633 176 GRIAPAGLVLLAVAVLGLIFAYRL-PK----VPAAAPEVF------------------DKK----------------K-- 214 (1146)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcC-cC----CCCCCcccc------------------ccc----------------c--
Confidence 34444444333222 222222222 11 111100000 000 0
Q ss_pred cCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HhhcCCCcC
Q 012668 180 HSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQG-MVMDTSIGS 258 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~ 258 (458)
....-...+.. +.+...+.+. ...+...+++.........+.... .....+
T Consensus 215 ~~~~~~~~~~~----------------------~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--- 266 (1146)
T PRK08633 215 YLFPKLLWRNL----------------------KLLRSDRVLW---LAIIGLSYFWFISQLAQANFPAYAKEVLGLD--- 266 (1146)
T ss_pred cccHHHHHHHH----------------------HHHhcCcHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC---
Confidence 00000000000 0000001111 111112222222221111111111 111111
Q ss_pred cccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 012668 259 FTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQ 338 (458)
Q Consensus 259 ~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
.....+++.....+..++...+.++ +.+| ....+.+.++.++.+++++++....
T Consensus 267 ~~~~~g~~~~~~~ig~~~g~~~~g~----l~~r-------~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 320 (1146)
T PRK08633 267 NTFQVQYLLAASAIGIGIGSLLAGR----LSGR-------HIELGLVPLGALGLALSLFLLPTAP--------------- 320 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HhCC-------ceEccchhHHHHHHHHHHHHHHHhh---------------
Confidence 0001222333333333444444444 3343 2223445566666666666655432
Q ss_pred CCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 339 NVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 339 ~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+++++..++.+++.++..+...+++.+.+|++.||.++|+.++...+|..+++.++..+.
T Consensus 321 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 321 ------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred ------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778899999999999999999999999999999999999999999988877776553
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=123.64 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc--chhhhH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG--WGLGFG 107 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g--w~~~F~ 107 (458)
+.+.+++.+++.|++.+...|...+++.|++++++ |+++++++....++|..+++.+++.+.+..+ ||+.|+
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 67788999999999999999999999999999876 9999999999999999999999999888766 999999
Q ss_pred HHHHHHHHHH
Q 012668 108 IPALFMGFAI 117 (458)
Q Consensus 108 i~~i~~~l~~ 117 (458)
+.++..++.+
T Consensus 173 ~~~~~~~~~~ 182 (405)
T TIGR00891 173 ISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHH
Confidence 8766544443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-11 Score=120.54 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++.+++.|++.+...+....+..|.+++++ |+++++++..+..+|..+||.+++++.+..|||+.|++.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 57788899999999999888888889999887765 889999999999999999999999999989999999998
Q ss_pred HHHHHHHHH
Q 012668 110 ALFMGFAIA 118 (458)
Q Consensus 110 ~i~~~l~~i 118 (458)
++..++..+
T Consensus 169 ~~~~~~~~~ 177 (394)
T PRK11652 169 LLLGAGVTF 177 (394)
T ss_pred HHHHHHHHH
Confidence 765544433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-11 Score=122.45 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc--------ccccchh
Q 012668 33 VFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ--------DNAGWGL 104 (458)
Q Consensus 33 ~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~--------~~~gw~~ 104 (458)
.+.+.+++.|+|.|+..|...+++.|++|+++ |+++.++...+.++|..+|+.++.++. .++|||+
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 47899999999999999999999999999887 999999999988899888886655442 2689999
Q ss_pred hhHHHHHHHHH
Q 012668 105 GFGIPALFMGF 115 (458)
Q Consensus 105 ~F~i~~i~~~l 115 (458)
.|++.++..++
T Consensus 194 ~f~i~~~~~l~ 204 (490)
T PRK10642 194 PFFIALPLGII 204 (490)
T ss_pred HHHHHHHHHHH
Confidence 99997764443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-10 Score=125.46 Aligned_cols=87 Identities=24% Similarity=0.407 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc----------
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN---------- 99 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~---------- 99 (458)
+.+.+++++++.|+|.|+..|...+++.+.+|+++ |++.++++.....+|.++++.++.++...
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 67888999999999999999999999999999876 99999999999999999999887665433
Q ss_pred ---ccchhhhHHHHHHHHHHHHHHHh
Q 012668 100 ---AGWGLGFGIPALFMGFAIASFFS 122 (458)
Q Consensus 100 ---~gw~~~F~i~~i~~~l~~ii~~~ 122 (458)
.+||+.|++.++..++.++..++
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999887766665554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-10 Score=117.94 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc-ccchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN-AGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~-~gw~~~F~i 108 (458)
+.+.+++..++.++..+...|...+++.|+++++| |+++.++...+.++|..+|+.+++++.+. .|||..|++
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 45656666667788999999999999999998877 99999999999999999999999999885 599999999
Q ss_pred HHHHHHHHHHHH
Q 012668 109 PALFMGFAIASF 120 (458)
Q Consensus 109 ~~i~~~l~~ii~ 120 (458)
.++..++..+..
T Consensus 167 ~a~~~l~~~l~~ 178 (402)
T PRK11902 167 MAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHH
Confidence 887665554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-11 Score=120.24 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++++++.|++.+...+...+++.|.+++++ |++++++++...++|..++|.+++++.+..|||+.|++.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 56677889999999999999999999999998876 999999999999999999999999998889999999998
Q ss_pred HHHHHHHHHH
Q 012668 110 ALFMGFAIAS 119 (458)
Q Consensus 110 ~i~~~l~~ii 119 (458)
++..++..+.
T Consensus 164 ~~~~~i~~~~ 173 (392)
T PRK10473 164 AAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHH
Confidence 8765555544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-11 Score=121.83 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc--------ccccchh
Q 012668 33 VFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ--------DNAGWGL 104 (458)
Q Consensus 33 ~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~--------~~~gw~~ 104 (458)
.+++++++.|++.|...|+..+++.|++|+++ |+++.+++....++|..+|+.+++.+. +.+|||+
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 56889999999999999999999999999887 999999999999999998888887763 4689999
Q ss_pred hhHHHHH
Q 012668 105 GFGIPAL 111 (458)
Q Consensus 105 ~F~i~~i 111 (458)
.|++.++
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9998654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=122.17 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHh-HhhhhccccccchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISS-SLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp-~l~g~l~~~~gw~~~F~i 108 (458)
+.+.+++.+++.|++.+...|...+++.|++++++ |+++++++..+.++|..++| ++++.+.+..+||+.|++
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 67888999999999999999999999999999876 99999999999999999999 677888888999999998
Q ss_pred HHHHHHHHHHHH
Q 012668 109 PALFMGFAIASF 120 (458)
Q Consensus 109 ~~i~~~l~~ii~ 120 (458)
.++..++..++.
T Consensus 156 ~~~~~~~~~~~~ 167 (379)
T TIGR00881 156 PGIIAIIVSLIC 167 (379)
T ss_pred HHHHHHHHHHHH
Confidence 886555544443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.1e-11 Score=118.68 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHH-HHHhHhhhhccccccchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGA-LISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~-~igp~l~g~l~~~~gw~~~F~i 108 (458)
+...+++.+.+.|+|.+...+...+.+.+.+++++ |+++++++..+.++|. .+||++++++.+..||+..++.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 56677888999999998888888888889988776 9999999999999996 6899999999988997766665
Q ss_pred HHH
Q 012668 109 PAL 111 (458)
Q Consensus 109 ~~i 111 (458)
...
T Consensus 178 ~~~ 180 (402)
T TIGR00897 178 ALA 180 (402)
T ss_pred HHH
Confidence 443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-11 Score=122.34 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhh-ccccccchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVW-IQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~-l~~~~gw~~~F~i 108 (458)
+...+++.+.+.|++.|...|.....+.|++|+++ |++++++++.+.++|..++|.+.++ +.++.+||+.|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45667788999999999999999999999999887 9999999999999999999887775 4445799999999
Q ss_pred HHHHHHHHHHHH
Q 012668 109 PALFMGFAIASF 120 (458)
Q Consensus 109 ~~i~~~l~~ii~ 120 (458)
.++..++..+..
T Consensus 191 ~~~~~~i~~~~~ 202 (438)
T TIGR00712 191 PAICAIIVALFA 202 (438)
T ss_pred HHHHHHHHHHHH
Confidence 887666654443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-10 Score=117.60 Aligned_cols=269 Identities=14% Similarity=0.128 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc-------ccccch
Q 012668 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ-------DNAGWG 103 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~-------~~~gw~ 103 (458)
...+++..++.+++.+...+...++..+..++++ +|++..++.....++|..+++.+.+.+. +..|||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 4555666777888888888888899998876533 3899999999999999888776655443 356899
Q ss_pred hhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCc
Q 012668 104 LGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDE 183 (458)
Q Consensus 104 ~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (458)
+.|.+.++..++..++.+...++ +++..+.. ..++
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e----~~~~~~~~-----------------------------------------~~~~ 208 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKE----RYSEIPKN-----------------------------------------IEKK 208 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEe----cCCCCCcc-----------------------------------------cccC
Confidence 99998887666555443333321 11100000 0000
Q ss_pred cchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCc
Q 012668 184 LRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPP 263 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 263 (458)
.+..+.. +.....|.+... .......+..+......... ..+...+ .....
T Consensus 209 ~~~~~~~----------------------~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~ 259 (437)
T TIGR00792 209 LSLKQIF----------------------KALFKNDQLLIL---CLAYLFYNLAFNIKNGVQVY---YFTYVLG-DPELF 259 (437)
T ss_pred CCHHHHH----------------------HHHhCCHHHHHH---HHHHHHHHHHHHHHcchhhe---eEeeecC-ChHHH
Confidence 0000000 000001112111 11122222222211111111 1111111 01111
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+.+..+..+..++..++..+ +.+|. ..++.+..|.++.+++++...+..
T Consensus 260 ~~~~~~~~i~~ii~~~~~~~----l~~r~-------g~~~~~~~~~~~~~~~~~~~~~~~-------------------- 308 (437)
T TIGR00792 260 SYMGSIAIVAGLIGVLLFPR----LVKKF-------GRKILFAGGILLMVLGYLIFFFAG-------------------- 308 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 22333334444555555555 45553 333556777777777766655432
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc-------hhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP-------DAMRSLCSALSLLTTALGNYLSSFILTVVTYFT 409 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~ 409 (458)
.+.+..++..++.+++.+...+...+.+.+.+| ++.+|.+.|++++...+|..+++.+.+.+.+..
T Consensus 309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 309 SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 134455667788899999999999999988876 567899999999999999999999999886543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=116.80 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|+|.+...+...+++.|++++++ |.+.++......++|..++|.+++++.+++|||+.|++.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 56778889999999998888888999999998776 788899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH
Q 012668 110 ALFMGFAIASFF 121 (458)
Q Consensus 110 ~i~~~l~~ii~~ 121 (458)
++..++..+..+
T Consensus 167 ~~~~~~~~~~~~ 178 (401)
T PRK11043 167 FAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHH
Confidence 776655554443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-11 Score=124.90 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+...+...+++.|.+++++ |++++++++.+.++|..++|.+++++.+++|||+.|++
T Consensus 106 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~ 179 (496)
T PRK03893 106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI 179 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 367788999999999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 012668 109 PALFMG 114 (458)
Q Consensus 109 ~~i~~~ 114 (458)
.++..+
T Consensus 180 ~~~~~~ 185 (496)
T PRK03893 180 GILPII 185 (496)
T ss_pred HHHHHH
Confidence 655433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-11 Score=121.71 Aligned_cols=139 Identities=10% Similarity=0.050 Sum_probs=97.1
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
.+..++.+..++..++..+ +.+|.+ +++.+..+.++.+++..++++.+
T Consensus 266 ~~~~~~~~~~~~~~~~~g~----l~dr~g-------~~~~~~~~~~l~~~~~~l~~~~~--------------------- 313 (420)
T PRK09528 266 YLNSFQVFLEALIMFFAPF----IINRIG-------AKNALLLAGTIMAVRIIGSGFAT--------------------- 313 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhC-------cchhhHHHHHHHHHHHHHHHhcc---------------------
Confidence 3444444445555555555 455543 23456677777777776665532
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHH-HHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSAL-SLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~-~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
++++++...++.+++.....+...+++.+..|++.++...+. +++...+|+.+++.+.+.+.+..
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-------------- 379 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-------------- 379 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh--------------
Confidence 566677788899999988888889999999999999887655 67788999999999998775321
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
++...|...+++.++..++.+...++
T Consensus 380 --G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 380 --GFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 24567887787777766666554443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.3e-11 Score=121.31 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc---------cc
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD---------NA 100 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~---------~~ 100 (458)
+...+++.+++.|++.+...+ ....+++++++++ |++++++.....++|..+++.+.+.+.. ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 567778889999999987654 4567899998876 9999999998888898888777765532 25
Q ss_pred cchhhhHHHHHHHHHHHHHHH
Q 012668 101 GWGLGFGIPALFMGFAIASFF 121 (458)
Q Consensus 101 gw~~~F~i~~i~~~l~~ii~~ 121 (458)
|||+.|++.++..++..+..+
T Consensus 196 gWr~~f~i~g~l~l~~~l~~~ 216 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILVL 216 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 899999998876655544433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-10 Score=110.16 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=74.4
Q ss_pred CCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc-----
Q 012668 25 SATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN----- 99 (458)
Q Consensus 25 ~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~----- 99 (458)
.+...+...+.++..++|.|.+..++..++++++.-++++ +++.+++......+|..+||++++.+...
T Consensus 4 ~~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~ 77 (310)
T TIGR01272 4 AASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDL 77 (310)
T ss_pred hHHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch
Confidence 3455688999999999999999999999999999998876 89999999999999999999999987631
Q ss_pred -----------ccchhhhHHHHHHHHHHHHHH
Q 012668 100 -----------AGWGLGFGIPALFMGFAIASF 120 (458)
Q Consensus 100 -----------~gw~~~F~i~~i~~~l~~ii~ 120 (458)
.+|++.|++.+....+..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 78 SMQVATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999996655444333333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-11 Score=115.30 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=86.3
Q ss_pred CCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhh
Q 012668 27 TPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGF 106 (458)
Q Consensus 27 ~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F 106 (458)
...+++.++++|.+.|+|.+....+..++++|.|++++ +|++++|+.-..+.+|-.+||+.||.+.|..|++..|
T Consensus 155 fg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF 229 (464)
T KOG3764|consen 155 FGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF 229 (464)
T ss_pred HcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence 34578899999999999999999999999999999876 4999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcce
Q 012668 107 GIPALFMGFAIASFFSGTSLY 127 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~~~~~~~ 127 (458)
++.++++++...+-++..+.+
T Consensus 230 lVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 230 LVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred HHHHHHHHHHHHHHHheeCcc
Confidence 999988888877766655543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.9e-12 Score=123.27 Aligned_cols=94 Identities=18% Similarity=0.256 Sum_probs=83.2
Q ss_pred CCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc-ch
Q 012668 25 SATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG-WG 103 (458)
Q Consensus 25 ~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g-w~ 103 (458)
...+...+.+.+.|.+.|+|++.+.|..+++++|.|++.+ |+++++++|+++++|..+|.+.+.++.+.-+ ||
T Consensus 115 ~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr 188 (493)
T KOG1330|consen 115 SGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR 188 (493)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence 3444678899999999999999999999999999999887 9999999999999999999999999988766 99
Q ss_pred hhhHHHHHHHHHHHHHHHhcC
Q 012668 104 LGFGIPALFMGFAIASFFSGT 124 (458)
Q Consensus 104 ~~F~i~~i~~~l~~ii~~~~~ 124 (458)
|.|+..+++.++..++.+++.
T Consensus 189 ~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 189 WAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred EEEEeehHHHHHHHHHHHhhc
Confidence 999999987777666654444
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.9e-10 Score=111.74 Aligned_cols=84 Identities=11% Similarity=-0.045 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHHHH
Q 012668 34 FFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFM 113 (458)
Q Consensus 34 ~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~ 113 (458)
+.....+.++..+...+...++..+..++++ ++.+.+.+.++..+|..+|+.+.+++.+++|||..|++.++..
T Consensus 100 ~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~ 173 (390)
T TIGR02718 100 AVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVP 173 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 3444555667788888888888777776655 7778888888889999999999999999999999999998766
Q ss_pred HHHHHHHHhc
Q 012668 114 GFAIASFFSG 123 (458)
Q Consensus 114 ~l~~ii~~~~ 123 (458)
++..+..++.
T Consensus 174 ~~~~~~~~~~ 183 (390)
T TIGR02718 174 LASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHc
Confidence 6655554333
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-09 Score=114.30 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc-----------
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD----------- 98 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~----------- 98 (458)
+...+++++++.|+|.|+..|....++.+.+|+++ |+++.++++...++|.++|+.++.++..
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 187 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 36789999999999999999999999999999987 9999999999999999999988876532
Q ss_pred ------------cccchhhhHHHHHHHHHHHHH
Q 012668 99 ------------NAGWGLGFGIPALFMGFAIAS 119 (458)
Q Consensus 99 ------------~~gw~~~F~i~~i~~~l~~ii 119 (458)
+++||+.|.+.++..++.++.
T Consensus 188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred cccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 248999998877655554443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-10 Score=110.56 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=66.8
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc--cchhhh
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA--GWGLGF 106 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~--gw~~~F 106 (458)
.+...+++.+++.|+|.+...+.....+.|.++ ++ |+++++++..+.++|..+++.+++++.++. +||+.|
T Consensus 85 ~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f 157 (355)
T TIGR00896 85 PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL 157 (355)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 356777899999999999988888889988885 34 899999999999999999999999987765 399998
Q ss_pred HHHHHHHHH
Q 012668 107 GIPALFMGF 115 (458)
Q Consensus 107 ~i~~i~~~l 115 (458)
.+.++..++
T Consensus 158 ~~~~~~~~~ 166 (355)
T TIGR00896 158 AWWALPALL 166 (355)
T ss_pred HHHHHHHHH
Confidence 876654433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-10 Score=113.50 Aligned_cols=288 Identities=7% Similarity=0.012 Sum_probs=158.9
Q ss_pred HHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHHHH
Q 012668 34 FFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFM 113 (458)
Q Consensus 34 ~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~ 113 (458)
.+++.++.+++.+...|...++..|.-+ + ++..++......++|.++||.++|.+.+ .+||+.|++.++..
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~ 172 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFA 172 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHH
Confidence 4556677888888888888777665321 1 4567788889999999999999998876 69999999988766
Q ss_pred HHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhhhhcc
Q 012668 114 GFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVV 193 (458)
Q Consensus 114 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (458)
++..+..+...++ +|+++... +. .+ . ..++.+.-+.
T Consensus 173 ~~~~~~~~~~~~~----~~~~~~~~----------~~----~~-~---------------------~~~~~~~~~~---- 208 (396)
T TIGR00882 173 LILMLLLMFAKPK----APSSATVA----------NA----LG-A---------------------NASAFSLKLA---- 208 (396)
T ss_pred HHHHHHHHHhCCC----Cchhhhhh----------cc----cc-c---------------------ccCCCCHHHH----
Confidence 6555443332221 11110000 00 00 0 0000000000
Q ss_pred ccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-HHhhc-CCCcCcccCcCccccchh
Q 012668 194 SDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQ-GMVMD-TSIGSFTIPPASLSSFDV 271 (458)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~-~~~~~-~~~~~~~~~~~~l~~ln~ 271 (458)
.+....|.+...+. ........+.+....+... ....+ ...+ ....+....+..
T Consensus 209 -------------------~~~l~~~~~~~~~l---~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~g~~~~~~~ 264 (396)
T TIGR00882 209 -------------------LELFRQRKFWMFVL---YVVGVACVYDVFDQQFANFFTSFFATPQQG--TRVFGYVTTMGE 264 (396)
T ss_pred -------------------HHHHcCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccccc--hHHHHHHHHHHH
Confidence 00000011111111 1112222222221111111 11111 0100 001122333333
Q ss_pred hhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHH
Q 012668 272 ISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIP 351 (458)
Q Consensus 272 ~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 351 (458)
+..++......+ +.+|. ++++.+.++.++.++++...... .+.+++++
T Consensus 265 i~~~~~~~~~g~----l~~r~-------g~~~~l~~~~~l~~l~~~~~~~~---------------------~~~~~~~~ 312 (396)
T TIGR00882 265 LLNALIMFCAPL----IINRI-------GAKNALLIAGTIMSVRIIGSSFA---------------------TTALEVVI 312 (396)
T ss_pred HHHHHHHHHHHH----HHHHh-------ccchhHHHHHHHHHHHHHHHHhc---------------------CChHHHHH
Confidence 333444444444 44553 33345677777777766654432 25666777
Q ss_pred HHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHH-HHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHH
Q 012668 352 QYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSAL-SLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYF 430 (458)
Q Consensus 352 ~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~-~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
..++.+++.........+++.+..|++.+++..+. ++....+|+.+++.+.+.+.+.. ++...
T Consensus 313 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~----------------G~~~~ 376 (396)
T TIGR00882 313 LKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI----------------GFQGA 376 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc----------------ccHHH
Confidence 88999999888877788888888888888886665 67889999999999999876321 25677
Q ss_pred HHHHHHHHHHHHHHHH
Q 012668 431 FWLLAGLSIFNMLLYV 446 (458)
Q Consensus 431 f~~~a~i~~~~~v~~~ 446 (458)
|.+.+++.++..++..
T Consensus 377 f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 377 YLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877777666543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-09 Score=110.08 Aligned_cols=334 Identities=12% Similarity=0.069 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhc--cccc---------
Q 012668 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWI--QDNA--------- 100 (458)
Q Consensus 32 ~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l--~~~~--------- 100 (458)
..+.+++.+.-++.....+...++++|.+|+++. +++.++++.....++|..+|+.++++. .+.+
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 4556666677778888888899999999998761 246899999999999999999999875 2221
Q ss_pred ----cchhhhHHHHHHHHHHHHHHHhcCcceeecCCCC-CchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCC
Q 012668 101 ----GWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGG-SPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGS 175 (458)
Q Consensus 101 ----gw~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (458)
+.|+.|++.++.++++.++..+..++. ++.. +...+ .++...
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~---~~~~~~~~~~-------------~~~~~~----------------- 237 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVKEN---PLIGSDDFIN-------------SEAAPP----------------- 237 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeeecc---CCCccccchh-------------hhcccc-----------------
Confidence 678999999988887777655444432 1111 00000 000000
Q ss_pred cccccCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCC
Q 012668 176 RKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTS 255 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 255 (458)
. +..++-.+.+. ++..++. -|.+.+++..-++..+-|..+....+.++-+..+-..+
T Consensus 238 -~-~~~~~~~~~~i-----------------~~~~~~m----P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~ 294 (477)
T TIGR01301 238 -S-KHGEEAFFGEL-----------------FGAFKYL----PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSV 294 (477)
T ss_pred -c-ccchhhhHHHH-----------------HHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCC
Confidence 0 00000000000 0000000 12233344444444444454444455554432221111
Q ss_pred Cc--CcccC---cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 012668 256 IG--SFTIP---PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLR-- 328 (458)
Q Consensus 256 ~~--~~~~~---~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~-- 328 (458)
-. .++-. ..+-..+|.+... +.+.+..++.+|.+.+ +....++.++.+++++...+......+
T Consensus 295 ~~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g~~------k~~~~~s~~~~~~~l~~~~~i~~~~~~~~ 364 (477)
T TIGR01301 295 NQGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWGAG------KRLWGIVNIILAICLAATVLVTYVAKNSR 364 (477)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccc------hhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 00 01000 1111222222222 3333344455553211 123367888888888887765421000
Q ss_pred HHhhh-cccCCCCCccch-hHHHHHHHHHHhHHHHHhhhhhhhhhhcccch--hhHHHHHHHHHHHHHHHHHHhhHHhhh
Q 012668 329 LAREL-ELVDQNVSVPIS-IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPD--AMRSLCSALSLLTTALGNYLSSFILTV 404 (458)
Q Consensus 329 ~~~~~-~~~~~~~~~~~s-~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~--~~~g~~~g~~~~~~~ig~~ig~~l~~~ 404 (458)
..+.+ +.+. .+.. .+..+....+.|+.-......=++++.+..|+ +..|.++|+.|++..+...+.....+.
T Consensus 365 ~~~~~~~~~~----~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 365 YYDGDGESLP----PPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred cccccccccC----cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 00000 0110 0112 35667788999999999999999999999995 455999999999999999999887777
Q ss_pred hhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012668 405 VTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYK 453 (458)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~ 453 (458)
+.+..+ ++....+.+-++.++++++..++..+|.+
T Consensus 441 ~~~~~g--------------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 441 WDQLFG--------------GGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHcC--------------CCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 543322 12235567777777777777766655544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-09 Score=110.41 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=100.1
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012668 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
..++.+..++...+.++ +.+| +++++.+.++.++.++++..+..... ...++
T Consensus 257 ~~~~~i~~i~~~~~~g~----l~dr-------~g~r~~l~~~~~~~~v~~~l~~~~~~-----------------~~~~~ 308 (418)
T TIGR00889 257 MSLSQFSEIFFILTIPF----FLKR-------FGIKKVMLLSLVAWALRFGFFAYGDP-----------------EYFGY 308 (418)
T ss_pred HHHHHHHHHHHHHHHHH----HHHH-------hCcHHHHHHHHHHHHHHHHHHHHcCc-----------------chhhH
Confidence 33344444444444444 4555 34446677888877777666654210 01123
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHH-HHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSL-LTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~-~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
+.+++..++.+++++...+....++.+..|++.||..+|+.+ ...++|..+|+.+.+.+.+.... .+..
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~----------~~~~ 378 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA----------YGTF 378 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc----------ccCC
Confidence 445667899999999999999999999999999999999997 67899999999999987643210 0001
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012668 426 HLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
+++..|.+.+++.++..+.++++.++-
T Consensus 379 ~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 379 DWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 356778888877777777666655533
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-09 Score=109.23 Aligned_cols=270 Identities=13% Similarity=0.088 Sum_probs=165.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc-------cc
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA-------GW 102 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~-------gw 102 (458)
....+++..++..++...+.....++..|..++++ +|.+..++.....++|.++...+.+.+.+.. +|
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~ 176 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY 176 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence 34445777777899999999999999999998754 3999999999999999876665555543321 68
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCC
Q 012668 103 GLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSD 182 (458)
Q Consensus 103 ~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (458)
++.+.+.++...+..++..+..|+-.++.++++ +
T Consensus 177 ~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~----------------------------------------------~ 210 (428)
T PF13347_consen 177 RWMALVLAIVGLVFFLITFFFVKERSVEVTEQE----------------------------------------------K 210 (428)
T ss_pred HHHHHHHHHHHHHHhhhhhheeeeccccccccc----------------------------------------------c
Confidence 998888887666666665544443000000000 0
Q ss_pred ccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHh-hcCCCcCccc
Q 012668 183 ELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMV-MDTSIGSFTI 261 (458)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~ 261 (458)
+.++.+..+ ..++ .|.+.. ++......+.......+.+.....+ ++.. +
T Consensus 211 ~~~~~~~~~----------------~~~~------nr~~~~---l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~----~- 260 (428)
T PF13347_consen 211 KISLRDSLR----------------SLFR------NRPFRI---LLLAFFLQWLAFALMNTFLPYYFTYVLGNE----G- 260 (428)
T ss_pred ccccccchh----------------hhcc------cchHHH---HHHHHHHHHhhhhhhhhHHHHHHHHHhcCc----h-
Confidence 000111100 0001 111211 2222333333333222222222111 1111 1
Q ss_pred CcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 012668 262 PPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVS 341 (458)
Q Consensus 262 ~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
..+.+..+..+..++..|+..+ +.+|.+++ +.+..+.++.+++.++..+...
T Consensus 261 ~~~~~~~~~~~~~~v~~~~~~~----l~~r~gk~-------~~~~~~~~~~~~~~~~~~~~~~----------------- 312 (428)
T PF13347_consen 261 LISIFMLIFFVASIVGSPLWGR----LSKRFGKK-------KVYIIGLLLAALGFLLLFFLGP----------------- 312 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----HHHHccce-------eehhhhHHHHHHHHHHHHHHHh-----------------
Confidence 1122233334444455555555 55554333 4567788888887777766531
Q ss_pred ccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccch-------hhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc
Q 012668 342 VPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPD-------AMRSLCSALSLLTTALGNYLSSFILTVVTYFTT 410 (458)
Q Consensus 342 ~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~-------~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~ 410 (458)
.+.+++++..++.+++.+.......+...|..+. +..|.+.|++++...++..+++.+.+.+.....
T Consensus 313 --~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 313 --GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred --hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 2678888999999999999999999999998884 457999999999999999999999998866543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-09 Score=108.88 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc-----c-----
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ-----D----- 98 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~-----~----- 98 (458)
.++..+++.+++.|++ |...+.....++++||+++ |+++++++....|+|..+++++++.+. +
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~ 198 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN 198 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4688999999999998 6678889999999999887 999999998778888877666655432 1
Q ss_pred --------cccchhhhHHHHHHHHHHHHHHHhcC
Q 012668 99 --------NAGWGLGFGIPALFMGFAIASFFSGT 124 (458)
Q Consensus 99 --------~~gw~~~F~i~~i~~~l~~ii~~~~~ 124 (458)
..+||.++++-.+..++..+.+++..
T Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~ 232 (462)
T PRK15034 199 GVPQADGSVMSLANAAWIWVPLLAIATIAAWSGM 232 (462)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34577777777666655555544443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-09 Score=107.36 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=72.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
.+.++.+.+|.++.+++++.+.+.. ..+.++.++..++.++|+++..+...+...+.+|++
T Consensus 291 ~g~~~~~~~g~~~~~i~~~~~~~~~-------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~ 351 (448)
T PRK09848 291 IGKKNTFLIGALLGTCGYLLFFWVS-------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYG 351 (448)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4445667888888888776665421 124555667788999999999999999999998865
Q ss_pred -------hHHHHHHHHHHHHHHHHHHhhHHhhhhhhhh
Q 012668 379 -------MRSLCSALSLLTTALGNYLSSFILTVVTYFT 409 (458)
Q Consensus 379 -------~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~ 409 (458)
.+|.+.|++++.+.+|..+|+.+.+.+....
T Consensus 352 ~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 352 EYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4699999999999999999999998876543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-09 Score=107.48 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=54.2
Q ss_pred CchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc
Q 012668 28 PAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ 97 (458)
Q Consensus 28 ~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~ 97 (458)
..+...+++++++.|+|.|...+..++.+.|..++++ |...++++.....+|..+||++++.+.
T Consensus 114 a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477889999999999999999999999998755443 666789999999999999999987653
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=113.00 Aligned_cols=285 Identities=15% Similarity=0.108 Sum_probs=159.9
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHH
Q 012668 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPA 110 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~ 110 (458)
.....+.+.+.+++.+...+...+++.|..+ |+. ..++...++.|.+.++|.++|+.++|++.++++|+..|++.+
T Consensus 120 ~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a 195 (468)
T TIGR00788 120 AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITA 195 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 3344457889999999999999999999998 431 235567788889999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhhh
Q 012668 111 LFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKA 190 (458)
Q Consensus 111 i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (458)
...++..+..++.+++.+..+|+.+.. +...+ . ..+. ...+..
T Consensus 196 ~l~ll~~~~~~~~~E~~~~~~~~~~~~-~~~~~----~----------------------------~~~~----~~~~~~ 238 (468)
T TIGR00788 196 ALLLLQLFVSNLSKERRAFVRPRIGTY-LEMNM----A----------------------------LLTL----GVLANV 238 (468)
T ss_pred HHHHHHHHHHHhccccccccccccccc-chhhh----h----------------------------hhhh----hHHHHH
Confidence 766666444444332100001110000 00000 0 0000 000000
Q ss_pred hccccccccCCCCCCCcccccchhhHHH------HHHHHHHHHHHHHHH-HHHHHhhcchhHHHHHHhhcCCCcCcccCc
Q 012668 191 AVVSDAEIKSGDFSNPWILCTVTQVEEL------KILIRMFPIWATGIV-FSAVYAQMSTLFVEQGMVMDTSIGSFTIPP 263 (458)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~l~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 263 (458)
.++..+. +.+...+. +..+ +........+.+..+. + . ...++
T Consensus 239 ---------------------~~~~~~l~~~l~~~~i~~~l~---fifl~~~~~~~~~~~~f~~~~---~-~---lG~s~ 287 (468)
T TIGR00788 239 ---------------------KVQILGLRGAIQLLEIAKPLI---FIFLSYANLPGASGSVFCATT---Q-C---LPGGP 287 (468)
T ss_pred ---------------------HHHHHHHHHHHhcHHHHHHHH---HHHHHHhhcCCCCceeEEEEc---c-c---CCCCc
Confidence 0000011 11111111 1111 1111111111111100 0 1 12223
Q ss_pred Cc---cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 012668 264 AS---LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNV 340 (458)
Q Consensus 264 ~~---l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
.. +....++..++...+.++ +.+| .+.++.+.++.++.+++.......... -+ ...|
T Consensus 288 ~~~G~~~~~~~v~~i~g~~~~~~----~~~~-------~~~r~~l~~~~~l~~~~~~~~~~l~~~-~~--~~~g------ 347 (468)
T TIGR00788 288 SFSGMSKVVGNLGSLCGVGGYDR----FLKT-------FPYRLLFGVTTLLYTLSSLFDLILVKR-WN--LAFG------ 347 (468)
T ss_pred chhhhHHHHHHHHHHHHHHHHHH----HHhh-------CCHHHHHHHHHHHHHHHHhCceeeeec-cc--cccC------
Confidence 22 223333333444444444 2233 566677788888777766443211100 00 0000
Q ss_pred CccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhh
Q 012668 341 SVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFT 409 (458)
Q Consensus 341 ~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~ 409 (458)
..+.++.....++.+++.++...+.+.++.+.+|++.+|+..++.....++|..+++.+++.+.+..
T Consensus 348 --i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 348 --ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred --CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0123345556788999999999999999999999999999999999999999999999888887543
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-09 Score=104.44 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc---chhhh
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG---WGLGF 106 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g---w~~~F 106 (458)
+.+.+++..+++|++.|- .....+.++.+||+|+ ++.+++++. .-|+|..+...+++++....| ||.+-
T Consensus 104 ~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~ 175 (417)
T COG2223 104 STWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVA 175 (417)
T ss_pred chHHHHHHHHHHhcccce-ehcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 346888888999998776 5667788999999987 899999999 999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCcc
Q 012668 107 GIPALFMGFAIASFFSGTSL 126 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~~~~~~ 126 (458)
.+..+.++++.+.+++..++
T Consensus 176 ~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 176 GIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 98888888888777666653
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-08 Score=102.79 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=76.6
Q ss_pred CchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhc------ccccc
Q 012668 28 PAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWI------QDNAG 101 (458)
Q Consensus 28 ~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l------~~~~g 101 (458)
..+.+.+++-++++|+.++...|+....++.+|.++| |+.-+++++.+.++|..+|.+++..+ ....|
T Consensus 131 ~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g 204 (495)
T KOG2533|consen 131 VHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG 204 (495)
T ss_pred HhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence 4578899999999999999999999999999999887 99999999999999999999999875 34579
Q ss_pred chhhhHHHHHHHHHHHHHH
Q 012668 102 WGLGFGIPALFMGFAIASF 120 (458)
Q Consensus 102 w~~~F~i~~i~~~l~~ii~ 120 (458)
|||.|.+.+++.++..++.
T Consensus 205 W~~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 205 WRWLFIIEGVITLVLGIVV 223 (495)
T ss_pred ceeehhHHHHHHHHHHheE
Confidence 9999999997666555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.6e-08 Score=96.00 Aligned_cols=272 Identities=10% Similarity=0.087 Sum_probs=155.6
Q ss_pred CCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhh
Q 012668 27 TPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGF 106 (458)
Q Consensus 27 ~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F 106 (458)
...+......+.++.|+|.+...+...++++|..+||+ |+++.++.|...-+|..++.++.|.+-+.++-.-..
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~ 158 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLI 158 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence 33455566677788999999999999999999999987 999999999999999999999999888877643222
Q ss_pred HH----HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCC
Q 012668 107 GI----PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSD 182 (458)
Q Consensus 107 ~i----~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (458)
-+ +.+.+.+.++-.+-.+++..+ .... +..+
T Consensus 159 ~v~~~~a~i~~~l~~ia~wg~E~r~~~--~~~~-------------------------------------------~~~~ 193 (403)
T PF03209_consen 159 QVIQGVALIALLLNLIALWGQEPRRSR--RAAA-------------------------------------------AERP 193 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcc--cccC-------------------------------------------CCCC
Confidence 22 122222222222111111000 0000 0000
Q ss_pred ccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcC--cc
Q 012668 183 ELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGS--FT 260 (458)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~--~~ 260 (458)
+..+.+.... ...+ .+.++++.+ .+..++-+..... ++ .-+++ +.
T Consensus 194 ~~~f~~a~~~-----------------~~~~--~~a~~f~~f---l~l~t~a~~~QD~-----iL------EPygg~Vfg 240 (403)
T PF03209_consen 194 RPPFREAWRQ-----------------VWAS--PQARRFFVF---LFLGTLAFFMQDV-----IL------EPYGGEVFG 240 (403)
T ss_pred CccHHHHHHH-----------------HHhC--CChhHHHHH---HHHHHHHHHhhHH-----Hc------CCchhHHcC
Confidence 0111111000 0000 112322221 1112221111110 11 01111 22
Q ss_pred cCcCccccchh---hhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 012668 261 IPPASLSSFDV---ISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVD 337 (458)
Q Consensus 261 ~~~~~l~~ln~---~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
++++.-.-+|+ .-+++...+..++ ..|. .++.+...+|..+.++++.+.......
T Consensus 241 msv~eTT~Lta~~~~G~L~G~~~~g~~----l~~~------~~~~~~a~~G~~~~~~~f~lii~a~~~------------ 298 (403)
T PF03209_consen 241 MSVGETTRLTAFWGGGTLLGMLLAGFL----LSRR------LGKKRTAALGCLLGALAFALIILAGPL------------ 298 (403)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC------CCchHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 33332222222 2233333333432 2221 222233445666666666555443211
Q ss_pred CCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc
Q 012668 338 QNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTT 410 (458)
Q Consensus 338 ~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~ 410 (458)
-+.+.+....++.|+|.++......+...+.++++..|..+|.|...++++..++..+++.+.+..+
T Consensus 299 ------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 299 ------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred ------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2567788899999999999999999999999999999999999999999999999999998877543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-08 Score=101.02 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc-------hhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP-------DAMRSLCSALSLLTTALGNYLSSFILTVVTYFTT 410 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~ 410 (458)
+.+.+++..++.++|++...+...+.+.|.+| ++..|...+.+.+...+|..+|+.+.+.+.+...
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556667789999999999999999999886 3456788999999999999999999998866543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=106.58 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc----------c
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD----------N 99 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~----------~ 99 (458)
+.+.+++++++.|++.+.. +...+.++|++++++ |+++++++....++|..+++.+++.+.+ +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 6778889999999997765 557889999998876 9999999999999999988888877654 3
Q ss_pred ccchhhhH-HHHHHH
Q 012668 100 AGWGLGFG-IPALFM 113 (458)
Q Consensus 100 ~gw~~~F~-i~~i~~ 113 (458)
.+||+.|+ +.++..
T Consensus 163 ~~w~~~~~~~~~~~~ 177 (366)
T TIGR00886 163 LAWGWAFVIVPAGIL 177 (366)
T ss_pred ccccchhHHHHHHHH
Confidence 48999994 434433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=106.02 Aligned_cols=318 Identities=13% Similarity=0.039 Sum_probs=165.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+..+..+.|+|.|... +....++|..|.+. |..++.+..+..-+...++|.++..+..+-+|||.|++.
T Consensus 130 ~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~ 202 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF 202 (599)
T ss_pred cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence 77788999999999987776 45666899998765 776766666665555557777777777677999999999
Q ss_pred HHHHHHHHHHHHhcCcceeec--CCCCCc----h--hhHHHHHHHHHHhhccccCCCc-chhhhccchhhhccCCccccc
Q 012668 110 ALFMGFAIASFFSGTSLYRFQ--RPGGSP----I--TRMCQVLVASFRKWNLEVPNDS-TLLYETQDKASAIEGSRKIEH 180 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~--~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 180 (458)
++...++++..+++.+.-++. +.++.+ + .|+.+.+...........+.+- ...+ +++.+
T Consensus 203 ~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~------------~~W~S 270 (599)
T PF06609_consen 203 IIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPY------------YPWKS 270 (599)
T ss_pred HHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCC------------CCCCC
Confidence 987777776644333221111 111111 1 3455555555543322222110 0000 11111
Q ss_pred CCccchhhhhhccccccccCCCCCCCccccc--chhh------HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhh
Q 012668 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCT--VTQV------EELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVM 252 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v------~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~ 252 (458)
...+.-+-.......... .||.+. +++. ++.|.+... .....+.-+.|.....++..+..++
T Consensus 271 a~VIa~lviG~~~Lv~F~-------~wE~~~~~~~Pl~P~~Lf~~~r~~~~~---lvi~fi~G~~~~s~~~l~p~~~~~v 340 (599)
T PF06609_consen 271 AHVIAPLVIGFVLLVAFV-------VWEWFGAPKDPLFPHRLFKDRRGFAAL---LVISFISGMNFFSVNILWPQQVVNV 340 (599)
T ss_pred ccchhhHHHHHHHHHHHH-------HhhhhccCCCCcCCHHHhccchHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111111100000000000 111110 1111 112222111 1122222222333333344433222
Q ss_pred c-CCCcCcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012668 253 D-TSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLAR 331 (458)
Q Consensus 253 ~-~~~~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~ 331 (458)
- .+..+. ...+++.....+...+.+.+... +.++. .+.++.+.+|.+++.+++..+.....
T Consensus 341 f~~d~~~~-~~~~~~s~~~~fg~~~g~~i~g~----l~~~i------r~~Kw~li~~~~~~ta~~Gama~~~~------- 402 (599)
T PF06609_consen 341 FGSDPISI-TEIGWISSPVGFGSCAGAVILGL----LFSKI------RHIKWQLIFGSVLMTAFCGAMAAVRP------- 402 (599)
T ss_pred ccCCCccc-ceeehhhhhHHHHHHHHHHHHHH----HHHHc------cchhHHHHHHHHHHHHHHHHHHHccC-------
Confidence 1 110000 01234444444444444444333 33332 12345667777776665555544321
Q ss_pred hhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 332 ELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 332 ~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+ ..+.+ +...++.++|.+.+..+....+.-..|++.-|..+|+....+.+|+.+|..+...+.
T Consensus 403 ---------~-n~~~~--i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 403 ---------D-NKNAA--IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred ---------C-CcchH--HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0 11222 344567778888888888888888899999999999999999999999998886653
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-08 Score=101.40 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=70.4
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc----------
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD---------- 98 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~---------- 98 (458)
.+.+.+++++++.|+|.|..++..++.+.+..++++ |++..++.....++|..+||.+++.+..
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 467888999999999999999999999999887765 8889999999999999999999987742
Q ss_pred ----------------cccchhhhHHHHHHHHHHHH
Q 012668 99 ----------------NAGWGLGFGIPALFMGFAIA 118 (458)
Q Consensus 99 ----------------~~gw~~~F~i~~i~~~l~~i 118 (458)
..+||+.|.+.++..++..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24699999987765544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.2e-08 Score=102.93 Aligned_cols=90 Identities=17% Similarity=0.157 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc---------
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA--------- 100 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~--------- 100 (458)
....+++++++.|+|.++..|...+++.|.+++++ |+.++++++.+..+|..+|++++|++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 35677899999999999999999999999999887 999999999999999999999999987643
Q ss_pred -------------cchhhhHHHHHHHHHHHHHHHhcCc
Q 012668 101 -------------GWGLGFGIPALFMGFAIASFFSGTS 125 (458)
Q Consensus 101 -------------gw~~~F~i~~i~~~l~~ii~~~~~~ 125 (458)
+||..|++.+++.++..+.+++..+
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~ 282 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPK 282 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2777899888766665554444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.4e-08 Score=95.12 Aligned_cols=286 Identities=13% Similarity=0.106 Sum_probs=156.0
Q ss_pred CCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc---cccc
Q 012668 26 ATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD---NAGW 102 (458)
Q Consensus 26 ~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~---~~gw 102 (458)
+.+.+.+.+..+|++.|+..|- -..+.+.++|.+++|+ |+.+++.+..+..+|..+||.+|||+.+ ..|-
T Consensus 116 ~~S~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~ 188 (451)
T KOG2615|consen 116 ALSRNFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGS 188 (451)
T ss_pred HHHHHHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhcc
Confidence 3444666777779999998876 4567899999999977 9999999999999999999999999988 3343
Q ss_pred hhhhHHHHHHHHHHHH--H-H-HhcCcceeecCCCC---CchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCC
Q 012668 103 GLGFGIPALFMGFAIA--S-F-FSGTSLYRFQRPGG---SPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGS 175 (458)
Q Consensus 103 ~~~F~i~~i~~~l~~i--i-~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (458)
.+-++.+-...+++.. . + ++..+.... ++++ .++.+.. +.
T Consensus 189 ~p~alP~~~v~i~a~~~v~~~~~~lpETL~~-rk~~~~~~~~~~~~-------------------------~~------- 235 (451)
T KOG2615|consen 189 YPFALPCLLVFILAAGDVTFFPWFLPETLPL-RKRNDEHSTLQEAA-------------------------DD------- 235 (451)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhCCccccc-hhhcccccchhhhh-------------------------hh-------
Confidence 3333323332222222 2 2 222222211 1111 0000000 00
Q ss_pred cccccCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhh-cC
Q 012668 176 RKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVM-DT 254 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~-~~ 254 (458)
+ ..-.+.+|+...... +++- ..+.++..+. .-..++.|....+.+....... +.
T Consensus 236 -~-~~~~~~~~~~~v~~l----------rn~p---~~~~i~~~~i----------~~l~~~ly~~l~s~~~~t~~~l~~~ 290 (451)
T KOG2615|consen 236 -R-LALLKFARIFKVAAL----------RNPP---LLDFISVLRI----------FGLHYFLYLELFSGLENTVLFLTHG 290 (451)
T ss_pred -h-hhhcchhhhhhhhhh----------cCcc---ccchHHHHHH----------HHHHHHHHHHHHHHHHhhHHHhhcC
Confidence 0 001111222221100 0000 0011111111 1112222333333221111111 11
Q ss_pred CCcCcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012668 255 SIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELE 334 (458)
Q Consensus 255 ~~~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~ 334 (458)
.++-.....+.+....++...+.+-. ..|..+|..+. .......++.++.-.+.++....
T Consensus 291 rfg~ss~~~G~vl~~tGl~m~~~ql~----~~~~l~~~~~~-----~~a~l~~~l~~~vP~~llls~~~----------- 350 (451)
T KOG2615|consen 291 RFGYSSMQQGKVLSTTGLLMLVIQLA----LVPILPRYKGN-----IKAVLLFSLLLIVPAFLLLSLAR----------- 350 (451)
T ss_pred ccCCChhhheeeeehhhHHHHHHHHh----ccccccccccc-----hhhHHHHHHHHHHHHHHHHhccc-----------
Confidence 11111223344444445444444422 23344443322 22334444444444444444331
Q ss_pred ccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 335 LVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 335 ~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
....+..+..+.++......+....++.+..|++.||...|+.....+++.++||++.+.+.
T Consensus 351 ----------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 351 ----------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred ----------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 33556778899999999999999999999999999999999999999999999999998765
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-07 Score=95.29 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc-------hhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhh
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP-------DAMRSLCSALSLLTTALGNYLSSFILTVVTYFT 409 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~ 409 (458)
+.+.+++..++.+++.+...+...+++.+.+| ++..|.+.|.+.+..-+|..+++.+.+.+.+..
T Consensus 323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44556667788999999999999999999977 455677999999999999999999998876544
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-07 Score=91.66 Aligned_cols=293 Identities=12% Similarity=0.091 Sum_probs=168.0
Q ss_pred CCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc------
Q 012668 26 ATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN------ 99 (458)
Q Consensus 26 ~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~------ 99 (458)
+.......|++++.++|.|-+..++..++++++..++++ ..+-+++......+|+++||++++++.++
T Consensus 99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~ 172 (422)
T COG0738 99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM 172 (422)
T ss_pred hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 566689999999999999999999999999999998875 45567888888999999999999998773
Q ss_pred -------------ccchhhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhcc
Q 012668 100 -------------AGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQ 166 (458)
Q Consensus 100 -------------~gw~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (458)
-.|++.|.+.+....+..+.....+ +.+.++..+.
T Consensus 173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k--~p~~~~~~~~------------------------------ 220 (422)
T COG0738 173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSK--LPDLQVAAPS------------------------------ 220 (422)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc--CCcCCccccc------------------------------
Confidence 2377777776654444443333322 1111111100
Q ss_pred chhhhccCCcccccCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchh-H
Q 012668 167 DKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTL-F 245 (458)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~-~ 245 (458)
..++. .....+..+... ..+.......|...+..... +
T Consensus 221 ----------~~~~~------------------------------~~~~~~l~~~~~-~~~gvl~~FlYVG~Eva~gsfl 259 (422)
T COG0738 221 ----------LGASG------------------------------SAGLSSLFQNKH-LRLGVLAIFLYVGAEVAIGSFL 259 (422)
T ss_pred ----------ccccc------------------------------cchHHHHHhChH-HHHHHHHHHHHHhHHHHHHHHH
Confidence 00000 000001111111 11222333344443333322 2
Q ss_pred HHHHHh-hcCCCcCcccCcCccccchhhhHHHHHhhhhh-hhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 012668 246 VEQGMV-MDTSIGSFTIPPASLSSFDVISVIFWVPIYDK-IIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVE 323 (458)
Q Consensus 246 ~~~~~~-~~~~~~~~~~~~~~l~~ln~~~vi~~~pl~~~-~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~ 323 (458)
+..... .+.+ +. +..+.......+-..+| +..++.+| +++.+-+..-.+...+-++...+.
T Consensus 260 ~~y~~~~~g~~----~~-----~aa~~~s~~~~~~~vGRFig~~lm~~-------~~~~k~Laf~a~~~ill~~~~~l~- 322 (422)
T COG0738 260 VSYLEELLGLN----EQ-----QAAYYLSFFWVGFMVGRFIGSALMSR-------IKPEKYLAFYALIAILLLLAVALI- 322 (422)
T ss_pred HHHHHhcCCcc----HH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-------hCHHHHHHHHHHHHHHHHHHHHHh-
Confidence 222211 1111 11 11222222222222233 34446665 455554444333322222222222
Q ss_pred HHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhh
Q 012668 324 INRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILT 403 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~ 403 (458)
+-.+.+....+.|+.....+|+..+...+..| ......+....+..+|+.+-|.+.+
T Consensus 323 ---------------------~g~v~~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G 379 (422)
T COG0738 323 ---------------------GGVVALYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQG 379 (422)
T ss_pred ---------------------cChHHHHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHH
Confidence 22455667888999999999999999999999 5555666677777888888888888
Q ss_pred hhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012668 404 VVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYK 453 (458)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~ 453 (458)
.+.+.. +....+.....+|.+-.+.+.++.++.|
T Consensus 380 ~i~d~~----------------g~~~~~~~~pllc~lyV~~~~~~~~~~k 413 (422)
T COG0738 380 VIADMF----------------GIQLTFLIVPLLCYLYVLFFALIGKKSK 413 (422)
T ss_pred HHHHhh----------------hhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 776432 1234455566777777777777776665
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-06 Score=88.71 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+.+.+.+.-++.|+..+-..+.+-++..+..|++..+...|++.+..-....+||.+.+.+.+.+.
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-------------- 444 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-------------- 444 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 445566677789999999999999999999999999999999999999999999999999986542
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 012668 425 GHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~~~ 457 (458)
+..+.+..+.++.+++.++++.+.....++++
T Consensus 445 -~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~~A 476 (477)
T PF11700_consen 445 -SQRYGFLFLLVLFLIGLILLFFVDVEKGREDA 476 (477)
T ss_pred -CchhHHHHHHHHHHHHHHHHhhccchhhhhcc
Confidence 23455667777777777777665555544443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.5e-07 Score=92.19 Aligned_cols=342 Identities=12% Similarity=0.081 Sum_probs=178.7
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhh--hccccccchhhh
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIV--WIQDNAGWGLGF 106 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g--~l~~~~gw~~~F 106 (458)
.+..++.+++++.|+..|........++++.-|++- |+..-.....+.++|.++|.+++- .++..-.|++.+
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~ 187 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLL 187 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHH
Confidence 377889999999999999999999999999999987 999999999999999999976662 455666799999
Q ss_pred HHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccch
Q 012668 107 GIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRC 186 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (458)
.++.+..++.++...+..+.-+.---+++...+..+.++.-... .. +.....+. ..+ .-.+..+..++.++
T Consensus 188 ~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~---~~--~~~~~e~~-~~e---~~~~~~~~~~~~sl 258 (485)
T KOG0569|consen 188 AFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGK---ED--VEAEIEEM-LRE---IEEEELEKKKQISL 258 (485)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCC---Cc--chhHHHHH-HHH---HHHhccccccCCcH
Confidence 99888666666655443321100000112222222211111110 00 00000000 000 00000000011111
Q ss_pred hhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH--HHHHhhcCCCcCcccCcC
Q 012668 187 LDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFV--EQGMVMDTSIGSFTIPPA 264 (458)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~ 264 (458)
.+ +.+.+..++.+.+ . +.....+|+..... .+....-.+. |+....+
T Consensus 259 ~~--------------------------~~~~~~lR~~~~i--~--~~v~~~qq~sGi~ai~~Yst~i~~~a-G~~~~~a 307 (485)
T KOG0569|consen 259 RQ--------------------------LLKNPTLRRPLLI--G--IVVSFAQQFSGINAIFFYSTSIFKTA-GFTPEEA 307 (485)
T ss_pred HH--------------------------HhcCcchhHHHHH--H--HHHHHHHHhcCcceeHHHHHHHHHHc-CCCHHHH
Confidence 11 1111111112111 1 11111233332111 1111100111 1111111
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
...+.....+-+...+. ...+.+|+++ +..+..+..++.+..+.+......... .+ ++
T Consensus 308 ~~an~~~g~v~~~~t~~---~~~lid~~gR-------RpLll~~~~~~~~~~~~~~~~~~l~~~----~~--------~~ 365 (485)
T KOG0569|consen 308 QYANLGIGIVNLLSTLV---SPFLIDRLGR-------RPLLLISLSLMAVALLLMSIALFLSNS----FG--------SW 365 (485)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhcCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHH----hh--------hH
Confidence 12121111111122111 1224555433 356777777777776666655433211 00 01
Q ss_pred hhHHHHHHHHHHhHHHHHh-hhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCT-FIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~-~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
-.+..+.+.++..++..+- .|..+-+..+..|++.|..++......+-+.+.+-......+++..+
T Consensus 366 ~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g------------- 432 (485)
T KOG0569|consen 366 LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG------------- 432 (485)
T ss_pred HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 1122344555555554444 68899999999999999999999999999999988887777764321
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
.+.|.++++.+.+..+..++..+-.|.|
T Consensus 433 ----~~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 433 ----PYVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred ----chhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 2557777777777777666665555544
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-06 Score=89.38 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc-------ccch
Q 012668 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN-------AGWG 103 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~-------~gw~ 103 (458)
...+++.-++..++.........++..+..++.+ +|.+..++.....++|..+++.+...+.+. .||+
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~ 183 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ 183 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 3445556666788888888899999999987654 399999999999999988887775443332 3577
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 012668 104 LGFGIPALFMGFAIASFFS 122 (458)
Q Consensus 104 ~~F~i~~i~~~l~~ii~~~ 122 (458)
....+.++...++..+.+.
T Consensus 184 ~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 184 GGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7666666554444444333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8e-07 Score=85.55 Aligned_cols=85 Identities=22% Similarity=0.377 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc-cchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA-GWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~-gw~~~F~i 108 (458)
+...++.+..+.|.|-+.......+.+.+.||++ -+..+++|..++++|+.+++.++..+.++. |||....+
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 5677899999999999999999999999999875 588999999999999999999999999887 79997777
Q ss_pred HHHHHHHHHHHHH
Q 012668 109 PALFMGFAIASFF 121 (458)
Q Consensus 109 ~~i~~~l~~ii~~ 121 (458)
=+...++++++++
T Consensus 171 WAl~allAl~~Wl 183 (395)
T COG2807 171 WALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHh
Confidence 6766666666543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-06 Score=86.45 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=89.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
++..+.+.++.+..++=..++...+. +....+..+.+.+.++|+..++....+..++.+.+|++
T Consensus 270 ~g~~~ll~~a~~~~~vR~~l~a~~~~----------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~ 333 (400)
T PF03825_consen 270 FGIKWLLLLALVAYAVRWLLYAYFSD----------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE 333 (400)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcC----------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc
Confidence 66667788888887777766665420 00011122344567899999999999999999999999
Q ss_pred hHHHHHHHHHHH-HHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012668 379 MRSLCSALSLLT-TALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 379 ~~g~~~g~~~~~-~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
.|+..++++... .++|..+|..+++.+.+....+. ...+...|.+.+++.++..+++++..|+.
T Consensus 334 ~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~----------~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 334 LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG----------MFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh----------hhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999998765 68999999999998865332110 01234566777777777777777665443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.4e-07 Score=89.82 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH-
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI- 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i- 108 (458)
+...+.+.+++.|+++|+.. .....+..++|++| |+++.+++..+.++|.++++++++++ .++|||+-+..
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln 185 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHH
Confidence 67888999999999999999 99999999999887 99999999999999999999999994 46899975554
Q ss_pred --HHHHHHHHHHHHHh
Q 012668 109 --PALFMGFAIASFFS 122 (458)
Q Consensus 109 --~~i~~~l~~ii~~~ 122 (458)
+.....+++++-++
T Consensus 186 ~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 186 IISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 44445555555444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.7e-06 Score=85.33 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=76.6
Q ss_pred CCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchh
Q 012668 25 SATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGL 104 (458)
Q Consensus 25 ~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~ 104 (458)
.+...+.+.+++.+.+.|++.++...+...+++|.+++++ |+.+..+ ......|+.++|++++++.. +|||
T Consensus 165 ~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~ 235 (521)
T KOG0255|consen 165 TAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRW 235 (521)
T ss_pred HHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHH
Confidence 3445589999999999999999999999999999999987 9999999 88999999999999999987 9999
Q ss_pred hhHHHHHHHHHHHHH
Q 012668 105 GFGIPALFMGFAIAS 119 (458)
Q Consensus 105 ~F~i~~i~~~l~~ii 119 (458)
.+++..+..++.++.
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 236 LFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988766665555
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.3e-07 Score=93.37 Aligned_cols=339 Identities=14% Similarity=0.081 Sum_probs=179.4
Q ss_pred chhHHHHHHH-HHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhH
Q 012668 29 AQYAVFFFGL-YLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFG 107 (458)
Q Consensus 29 ~~~~~~~~~l-~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~ 107 (458)
.+.+.+++.. ++.|+|.|+.......+++.+|++ + |+.+.++-..+..+|.++=|.+.-++.+.+|||+.++
T Consensus 132 ~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l 204 (509)
T KOG2504|consen 132 TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALL 204 (509)
T ss_pred hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H------HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHH
Confidence 3566666665 668999999999999999977654 3 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchh
Q 012668 108 IPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCL 187 (458)
Q Consensus 108 i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
+-+...+-.++.-+..++...+.+|. ...+... ........+..........++ +..+.+..++-...
T Consensus 205 ~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 272 (509)
T KOG2504|consen 205 IFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN-----SAASVESTPKPVELRISERDS-----GLKKLSLSNLATLK 272 (509)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc-----ccccccccccccccccccCCC-----CCCcccccchhhhh
Confidence 87765544444444444321111111 0000000 000000000000000000000 00000000000000
Q ss_pred hhhhccccccccCCCCCCCcccccch---hhHHHHHH--HHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccC
Q 012668 188 DKAAVVSDAEIKSGDFSNPWILCTVT---QVEELKIL--IRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIP 262 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~--~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 262 (458)
+.. ..++....+ ...|.+.+ ..++.+.....+....+......+.....+ ..+. +..
T Consensus 273 ~~~--------------~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~--~g~~--~~~ 334 (509)
T KOG2504|consen 273 RGP--------------DKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS--LGLS--SND 334 (509)
T ss_pred hCC--------------ccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCC--hhh
Confidence 000 000000000 00011111 112222222222222222222222222221 1110 111
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+.+..+-++.-++..++... +.++.. .+..+...++++..+++.+...+.
T Consensus 335 aa~l~Siigi~~i~gRi~~G~----laD~~~-----~~~~~~~~~~ll~~gl~~~~~p~~-------------------- 385 (509)
T KOG2504|consen 335 AAFLLSIIGVSDIIGRIILGL----LADKPG-----IRALVLFLLTLLIAGLARLFLPFA-------------------- 385 (509)
T ss_pred hHHHHHHHHHhhhhhhhhhhh----hcCccc-----cchHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 222222222222333333333 222211 334455677777777777555553
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
.+++.++..-++.|+..+.........+.+..+.+.-..+.|+..+.++++..+|+.+.+.+.+.+
T Consensus 386 -~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t------------- 451 (509)
T KOG2504|consen 386 -TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT------------- 451 (509)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc-------------
Confidence 366667777889999999999998899999999999999999999999999999999999765432
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012668 423 NKGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
++|...|...++..+++.++.++..
T Consensus 452 --g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 452 --GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred --CCeeeehhhcChHHHHHHHHHHHhH
Confidence 2245556667777677776655554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=86.52 Aligned_cols=141 Identities=16% Similarity=0.088 Sum_probs=119.9
Q ss_pred CcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 012668 262 PPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVS 341 (458)
Q Consensus 262 ~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
..+++-++++..+.+..|+... +.+| .++++.+...+.+..+|.++..+.
T Consensus 49 ~aG~lis~yAl~~ai~ap~l~~----lt~r-------~~Rr~lLl~~l~lFi~~n~l~alA------------------- 98 (394)
T COG2814 49 AAGQLITAYALGVALGAPLLAL----LTGR-------LERRRLLLGLLALFIVSNLLSALA------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHcc-------cchHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 3566778888889999998887 4444 455567777788888888888775
Q ss_pred ccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCC
Q 012668 342 VPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDN 421 (458)
Q Consensus 342 ~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~ 421 (458)
.+++.+.++.++.++..+..++...+.+.+.+|+++|++++++.+....++..+|..++..+.+.. +
T Consensus 99 --p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------G----- 165 (394)
T COG2814 99 --PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------G----- 165 (394)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------h-----
Confidence 388889999999999999999999999999999999999999999999999999999999887543 2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 422 LNKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 422 ~~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
....|+.+++++++..+..+...+
T Consensus 166 -----WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 166 -----WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 478899999999988888777776
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-06 Score=86.89 Aligned_cols=137 Identities=11% Similarity=0.022 Sum_probs=101.0
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+.....+...+..+.... +.+| +++++.+..+.++.+++.+..... .+
T Consensus 49 ~~~~~~~~~~~~~~~~g~----l~dr-------~g~r~~~~~~~~~~~~~~~~~~~~---------------------~~ 96 (390)
T PRK03545 49 MLTIYAWVVALMSLPLML----LTSN-------VERRKLLIGLFVLFIASHVLSALA---------------------WN 96 (390)
T ss_pred HHHHHHHHHHHHHHHHHH----HHcC-------CChHHHHHHHHHHHHHHHHHHHHh---------------------cc
Confidence 333444444444444444 4555 455577888888888887777664 26
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
++++.+..+++|++.+...+...+++.+..|++.|+..+|++....++|..+++.+.+.+.+..
T Consensus 97 ~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~---------------- 160 (390)
T PRK03545 97 FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL---------------- 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh----------------
Confidence 7788888899999999999999999999999999999999999999999999999988765321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 426 HLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
++...|++.++++++..+..+...+
T Consensus 161 gw~~~f~~~~~~~~l~~~~~~~~~~ 185 (390)
T PRK03545 161 GWRTTFLAIGGGALITLLLLIKLLP 185 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2456777777777666555444333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-07 Score=93.64 Aligned_cols=140 Identities=16% Similarity=0.215 Sum_probs=110.8
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012668 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
+..--+.-.++.|+.+. +.+| .++.+.+++|..+-.++.+..++.. +.
T Consensus 74 ~~vf~v~~~i~sPl~gy----Ladr-------yNR~~v~~vG~~iW~~Av~~~~fs~---------------------~F 121 (493)
T KOG1330|consen 74 QTVFIVVFMIASPLFGY----LADR-------YNRKRVIAVGIFIWTLAVFASGFSN---------------------HF 121 (493)
T ss_pred hHHHHHHHHHHHHHHHH----HHhh-------cCcceEEeeHHHHHHHHHHHHHHHH---------------------HH
Confidence 33333334466788877 5555 5666889999999999988888753 67
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
|.+++.-.+.|+||....|...+++.|..|+..|+++.+++++...+|..+|...+..+.+.+ ++
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~---------------~~ 186 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT---------------FW 186 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc---------------cc
Confidence 778889999999999999999999999999999999999999999999999998888776432 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012668 427 LDYFFWLLAGLSIFNMLLYVVCAKKYK 453 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~~~~~ 453 (458)
..+.|...++++++.+++.+++.+--+
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 466788888888888877665554433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.2e-06 Score=79.61 Aligned_cols=309 Identities=12% Similarity=0.149 Sum_probs=170.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+..++.+.|+|.--...+.+.....+|..+| ...+|++.....-+|+..-..+.+|+.+..+ |. |.
T Consensus 134 ~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~-~~-~~- 204 (459)
T KOG4686|consen 134 HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMG-RM-FP- 204 (459)
T ss_pred HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHH-Hh-cc-
Confidence 367788899999999999999999999999999988 9999999999999999999999999988765 21 11
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
...-..+++...+-. +. .. .+.+..-......+. ++...+-++ + . -+|
T Consensus 205 ~~ghT~LG~~l~~~~-~t--------c~----~slical~lg~~D~r---Aerilh~e~------g--~--~Ge------ 252 (459)
T KOG4686|consen 205 GVGHTLLGLWLCFEV-KT--------CK----QSLICALSLGLSDDR---AERILHLEE------G--F--LGE------ 252 (459)
T ss_pred cchHHHHHHHHHHHH-HH--------HH----HHHHHHHHhhhhhhH---HHHHHhhhc------C--c--ccC------
Confidence 111111111111100 00 00 000000000000000 000000000 0 0 000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccc
Q 012668 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMF-PIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLS 267 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 267 (458)
.| + .++++.+...+ .+....+.++.....+.+ .-+...... +.+++..-.
T Consensus 253 ----------------~p----k---Ltdv~~f~ppfw~~~iicv~yyva~fPFi~---lg~~fF~~r---fGlS~~~a~ 303 (459)
T KOG4686|consen 253 ----------------EP----K---LTDVNTFYPPFWVLVIICVLYYVAWFPFIT---LGPMFFQKR---FGLSAVSAG 303 (459)
T ss_pred ----------------Cc----c---cccccccCccHHHHHHHHHHHHHHHHHHhh---hhHHHHHHh---hCCChhhcc
Confidence 00 0 11222221111 112223333333322221 111111111 123332223
Q ss_pred cchh---hhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 268 SFDV---ISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 268 ~ln~---~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
+++. ....+..|+++.+++ |++++ .+.+..+.+....+=..+.+
T Consensus 304 ~i~s~vy~Isav~spvfg~i~D----k~G~n------~~wv~~a~~~tl~~H~~l~F----------------------- 350 (459)
T KOG4686|consen 304 NILSTVYGISAVLSPVFGAISD----KYGFN------LWWVASACILTLLGHSGLFF----------------------- 350 (459)
T ss_pred chhhhhhhhhhhhhhhHHHhHh----hhcce------ehhHHHHHHHHHHHhhhHHh-----------------------
Confidence 3332 333456677777443 44432 13333444433333333332
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+.+-...++.+.|++..+..-..+-.+....|+..-|+.-|..+..+++|-.+.+.+.+.+.+.. ++ .
T Consensus 351 t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~-----g~-------y 418 (459)
T KOG4686|consen 351 TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD-----GS-------Y 418 (459)
T ss_pred hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC-----Cc-------h
Confidence 23334468889999999999999999999999999999999999999999999999999876422 11 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012668 425 GHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
...+.+|+..+.+++....+.+.++|+-
T Consensus 419 ~~le~ffl~~~~~aL~svgil~~~N~kq 446 (459)
T KOG4686|consen 419 DNLEAFFLIIGLMALTSVGILFYLNKKQ 446 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhheeccc
Confidence 3466778888888888877777766654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.9e-06 Score=83.90 Aligned_cols=142 Identities=11% Similarity=0.017 Sum_probs=101.6
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+.....+...+.+++..+ +.+|+ .+++.+.++.++.+++.+...+. .+
T Consensus 48 ~~s~~~~~~~~~~~~~g~----l~dr~-------G~r~~~~~~~~~~~~~~~~~~~~---------------------~~ 95 (412)
T TIGR02332 48 AATLFYAAYVICGIPSNI----MLAII-------GARRWIAGIMVLWGIASTATMFA---------------------TG 95 (412)
T ss_pred HHHHHHHHHHHHHhhHHH----HHHHh-------ChHHHHHHHHHHHHHHHHHHHHh---------------------cC
Confidence 344444444555555555 45553 33456788888888888877664 26
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
++++++..++.|++++...|...+++.+..|++.||..+|+++....+|..+++.+.+.+..... . .+..
T Consensus 96 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~----~~~~ 165 (412)
T TIGR02332 96 PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG------L----MALK 165 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------C----CCcc
Confidence 77888899999999999999999999999999999999999999999999999999886642100 0 0112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 012668 426 HLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
+....|.+.++++++..++.+++.
T Consensus 166 gwr~~f~~~~~~~l~~~~~~~~~~ 189 (412)
T TIGR02332 166 GWQWLFLLEGFPSVILGVMTWFWL 189 (412)
T ss_pred chhHHHHHHHHHHHHHHHHHhhcc
Confidence 346778777777766655544443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.6e-05 Score=77.95 Aligned_cols=119 Identities=6% Similarity=0.006 Sum_probs=89.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
+++++.+.++..++++=.+..++. .+++++++...++++-..+......-++.+..|++
T Consensus 286 ig~k~~Lllag~i~~iRi~~~~~~---------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r 344 (412)
T PF01306_consen 286 IGAKNLLLLAGVIMAIRIIGSGFA---------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR 344 (412)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHT-----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG
T ss_pred cChHhHHHHHHHHHHHHHHHHhhh---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh
Confidence 555667777777777766666654 37788889999999999999999999999999999
Q ss_pred hHHHHHHH-HHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012668 379 MRSLCSAL-SLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 379 ~~g~~~g~-~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
...+...+ ..+..++|..+.+.+.+.+.+.. +++..|++++++.+...++..+..++.++
T Consensus 345 lsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~----------------G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 345 LSATLYLVGFQFAKQIGIIILSPLAGYLYDRI----------------GFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc----------------CcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 99888777 46888999998888888776422 35667889998888777776666555554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-05 Score=78.63 Aligned_cols=273 Identities=12% Similarity=0.081 Sum_probs=152.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhc----cc---cccc
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWI----QD---NAGW 102 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l----~~---~~gw 102 (458)
.....++--++.+++.....-...++.+...++.+ +|.+..++..+..++|.++...+.+.+ .+ ..||
T Consensus 111 k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~ 185 (467)
T COG2211 111 KLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGY 185 (467)
T ss_pred chHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Confidence 34444566678889999999999999999998765 499999999999999977654444333 22 3466
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCC
Q 012668 103 GLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSD 182 (458)
Q Consensus 103 ~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (458)
+..-.+-+++..+.++..++..|+ +..+..+.. ...
T Consensus 186 ~~~~~~~~vi~~i~~l~~~~~v~E---R~~~~~~~~-----------------------------------------~~~ 221 (467)
T COG2211 186 QGTALVLGVIGVILLLFCFFNVKE---RVVETQPTK-----------------------------------------TGV 221 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---ccCccccCc-----------------------------------------ccc
Confidence 665555555444444443333322 111000000 000
Q ss_pred ccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccC
Q 012668 183 ELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIP 262 (458)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 262 (458)
+..+.+.. ...++....+.+.......+..++...+.+..+. +-.++.-+..
T Consensus 222 ~~~~~~~~-------------------------~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~---~y~lg~~~l~ 273 (467)
T COG2211 222 KLKLKDSF-------------------------LLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYV---TYVLGDPELF 273 (467)
T ss_pred cccHHHHH-------------------------HHHHccchHHHHHHHHHHHHHHHHHHhhhhheeE---EEEcCChHHH
Confidence 00111110 0011111112222233333444433333222211 1111111222
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
+...........++..++. .++.+|++ .++.+.+|.++.+++...+.+..
T Consensus 274 ~~~~~~~~~~~~l~~~~~~----p~L~~~~g-------kk~~~~~~~~~~~i~~~~~~f~~------------------- 323 (467)
T COG2211 274 AYLLLLASGAGLLIGLILW----PRLVKKFG-------KKKLFLIGLLLLAVGYLLLYFTP------------------- 323 (467)
T ss_pred HHHHHHHHHHHHHHHHHhH----HHHHHHhc-------hHHHHHHHHHHHHHHHHHHHhhc-------------------
Confidence 2222222222222222222 23555543 34677888888888888877753
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccch-------hhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhh
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPD-------AMRSLCSALSLLTTALGNYLSSFILTVVTYFT 409 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~-------~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~ 409 (458)
..+.++.++..++.++|.....+.-++.+.+..+- +..|..-+.+.+.+=+|..++..+.+.+....
T Consensus 324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 12566667777999999999999999999887664 45677888888888889988888888776543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-05 Score=79.87 Aligned_cols=129 Identities=8% Similarity=-0.039 Sum_probs=98.1
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
....+.+...+..|+..+ +.+| +++++.+..+.++.+++.+..... .+
T Consensus 60 ~~~~~~~~~~~~~~~~g~----l~Dr-------~grr~~~~~~~~~~~~~~~~~~~~---------------------~~ 107 (394)
T PRK10213 60 SVTVTAFVAMFASLFITQ----TIQA-------TDRRYVVILFAVLLTLSCLLVSFA---------------------NS 107 (394)
T ss_pred HHHHHHHHHHHHHHHHHH----Hhcc-------cCcHHHHHHHHHHHHHHHHHHHHH---------------------Ch
Confidence 334455555666666666 4455 444567788888888887776553 26
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
.+++++..++.|++.+...|...+++.+..|++.|+...+......++|..+++.+.+.+.+..
T Consensus 108 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~---------------- 171 (394)
T PRK10213 108 FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI---------------- 171 (394)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------
Confidence 7888889999999999999999999999999999999999999999999999999999775321
Q ss_pred hhHHHHHHHHHHHHHHH
Q 012668 426 HLDYFFWLLAGLSIFNM 442 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~ 442 (458)
++...|.+.++++++..
T Consensus 172 gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 172 GWRNVFNAAAVMGVLCI 188 (394)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 24566776666555443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-05 Score=82.94 Aligned_cols=140 Identities=12% Similarity=0.025 Sum_probs=103.4
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+|+...+.+......++.++ +.+| +.+++.+..+.++.+++.+..+..
T Consensus 43 ~~~~~~~~~l~~~~~~~~~G~----l~D~-------~Grk~~l~~~~~~~~~~~~~~~~a-------------------- 91 (495)
T PRK14995 43 LLWIIDIYSLVMAGMVLPMGA----LGDR-------IGFKRLLMLGGTLFGLASLAAAFS-------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHH-------hccHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence 455555556666667777776 4455 334467788888888888887764
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcc-cchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCC
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQ-SPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDN 421 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~-aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~ 421 (458)
.+++.+++..+++|+|.+...|.....+.+. .|++.|++.+|++.....+|..+|+.+++.+.+.
T Consensus 92 -~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~------------- 157 (495)
T PRK14995 92 -PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH------------- 157 (495)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------------
Confidence 2778888899999999999999888877665 4789999999999999999999999999977532
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 422 LNKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 422 ~~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.++.+.|.+...++++..++..+..+
T Consensus 158 ---~gwr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 158 ---FYWGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12356677766666665555444433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-05 Score=80.47 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=100.9
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++...+.+...+..++..+ +.+|. ++++.+..+.++.+++.+.....
T Consensus 43 g~~~~~~~~~~~~~~~~~g~----l~d~~-------g~r~~~~~~~~~~~~~~~~~~~~--------------------- 90 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGP----LSDRY-------GRRPVLLLGLFIFALSSLGLALS--------------------- 90 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhh----HHHhc-------CChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 34444455555566666666 44553 33356777888887777776553
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+.+.+++..++.+++.+...+...+++.+..|++.|+...|..+....+|..+++.+.+.+.+..
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------------- 156 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-------------- 156 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------
Confidence 266777888999999999999999999999999999999999999999999999999988664311
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
++...|.+.+++.++..+..+...+
T Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 157 --SWHAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2355677767666666655544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-05 Score=80.55 Aligned_cols=125 Identities=10% Similarity=0.003 Sum_probs=93.7
Q ss_pred hHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHH
Q 012668 273 SVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQ 352 (458)
Q Consensus 273 ~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 352 (458)
...+..|+.++ +.+|. ++++.+..+.++.+++++..... .+++++++.
T Consensus 58 ~~~~~~~~~G~----l~dr~-------g~k~~l~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~ 105 (400)
T PRK11646 58 IQQGLGIFGGA----IADRF-------GAKPMIVTGMLMRAAGFATMAIA---------------------HEPWLLWLS 105 (400)
T ss_pred HHHHHHhhhhH----HHHHh-------CchHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHH
Confidence 33444555555 44553 33456788888888888777653 266778888
Q ss_pred HHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHH
Q 012668 353 YFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFW 432 (458)
Q Consensus 353 ~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 432 (458)
.++.+++++...|...+.+.+..|++.|+..+|+.....++|..+|+.+.+.+.. .++...|.
T Consensus 106 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~-----------------~g~~~~f~ 168 (400)
T PRK11646 106 CILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ-----------------YDFRLVCA 168 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999987752 12356677
Q ss_pred HHHHHHHHHHHHHH
Q 012668 433 LLAGLSIFNMLLYV 446 (458)
Q Consensus 433 ~~a~i~~~~~v~~~ 446 (458)
+.+++.++..++..
T Consensus 169 ~~~~~~~~~~i~~~ 182 (400)
T PRK11646 169 TGAVLFVLAAAFNA 182 (400)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655554433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-05 Score=80.47 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=96.3
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.++...+..+..++..|+.++ +.+|.++ ++.+.++.++.+++++.+.+.+
T Consensus 45 ~g~~~s~~~~~~~~~~~~~G~----l~Dr~g~-------k~~~~~~~~~~~~~~~~~~~~~------------------- 94 (395)
T PRK10054 45 IGYAMTIALTIGVVFSLGFGI----LADKFDK-------KRYMLLAITAFASGFIAIPLVN------------------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhhcCc-------chhHHHHHHHHHHHHHHHHHHh-------------------
Confidence 344455555566667777777 4444332 2456777777778777766543
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
+++..++...+.+.+.....+...++..+..|++.|++..|+.+...++|..+|+.+.+.+... +|
T Consensus 95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~-------g~----- 160 (395)
T PRK10054 95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQ-------SI----- 160 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cc-----
Confidence 4455555667777787888888999999999999999999999999999999999999976521 12
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012668 423 NKGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
...|.+.+++.++..+...+..
T Consensus 161 -----~~~f~~~~~~~~i~~i~~~~~~ 182 (395)
T PRK10054 161 -----NLPFWLAAICSAFPLVFIQIWV 182 (395)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655444433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-05 Score=66.76 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=93.0
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012668 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
...+..++..++..+ +.+|. ++++.+..+..+..++.+..... .+.+.
T Consensus 6 ~~~~~~~~~~~~~g~----~~d~~-------g~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~ 53 (141)
T TIGR00880 6 GYALGQLIYSPLSGL----LTDRF-------GRKPVLLVGLFIFVLSTAMFALS---------------------SNITV 53 (141)
T ss_pred eehhHHHHHHhhHHH----HHhhc-------chhHHHHHHHHHHHHHHHHHHHh---------------------ccHHH
Confidence 344445566666665 34443 33355666767666666655543 25566
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhH
Q 012668 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLD 428 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
.....++.+++.....+...+++.+..|++.|+..++..+....+|..+++.+.+.+.+. .++.
T Consensus 54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~ 117 (141)
T TIGR00880 54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF----------------LGWR 117 (141)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc----------------cchH
Confidence 777889999999999999999999999999999999999999999999999998876421 1234
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012668 429 YFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 429 ~~f~~~a~i~~~~~v~~~~ 447 (458)
..|.+.+.+.++..+..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 118 APFLFLAILALAAFILLAF 136 (141)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5566666666655555443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-05 Score=80.23 Aligned_cols=135 Identities=12% Similarity=0.016 Sum_probs=97.7
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++.....+...+..++.++ +.+|. ++++.+.++.++.+++.++.....
T Consensus 62 ~~~~~~~~~~~~~~~~~G~----l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~--------------------- 109 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGI----VSDRS-------NARYFMGIGLIATGIINILFGFSS--------------------- 109 (434)
T ss_pred HHHHHHHHHHHHHHhhhhH----HHhhc-------CCchhHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3444444555566666666 45553 333567888888888877666542
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+++.++...++.+++++...+...+++.+..|++.||..+|+++...++|..+++.+.+.+.+.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~---------------- 173 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH---------------- 173 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------------
Confidence 5666677788899999999999999999999999999999999999999999999988876521
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 012668 425 GHLDYFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~ 447 (458)
.++.+.|.+.++++++..+...+
T Consensus 174 ~gw~~~f~~~~i~~~~~~~~~~~ 196 (434)
T PRK11663 174 YGWRYGMMIAGIIAIVVGLFLCW 196 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 12456677777666655444433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-05 Score=82.13 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.....+.+.+..+|.+.......+++.+.-.+|.. +|+...++.+....+|.+++-.++|++.++.++++.|.++
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 444556777888999999999999999999866542 2788899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCc
Q 012668 110 ALFMGFAIASFFSGTS 125 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~ 125 (458)
++...+.++..++..+
T Consensus 161 ~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 161 AALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8766666555444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-05 Score=83.66 Aligned_cols=140 Identities=13% Similarity=0.083 Sum_probs=102.7
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+++.....+...+..|+..+ +.+|+ ++++.+.++.++.+++.+.....
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~----l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~-------------------- 87 (485)
T TIGR00711 39 VQWVITSYMLANAISIPLTGW----LAKRF-------GTRRLFLISTFAFTLGSLLCGVA-------------------- 87 (485)
T ss_pred hhHHHHHHHHHHHHHHHhHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHhCc--------------------
Confidence 445566666666677777776 44553 33456778888888777766543
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
.+++.+++..+++|++.+...+...+++.+..|++.|+..++++.....+|..+|+.+.+.+.+.. +|
T Consensus 88 -~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~w----- 155 (485)
T TIGR00711 88 -PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY------HW----- 155 (485)
T ss_pred -CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc------Cc-----
Confidence 267778889999999999999999999999999999999999999999999999999988764211 22
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 423 NKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.+.|.+.+.++++..++.++..+
T Consensus 156 -----~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 156 -----RWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred -----eehhhhhhHHHHHHHHHHHHHcC
Confidence 44566666665555554444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-05 Score=78.81 Aligned_cols=139 Identities=14% Similarity=0.039 Sum_probs=102.5
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
++....+.+...+..|+..+ +.+| .++++.+.++.++.+++.++....
T Consensus 41 g~~~s~~~~~~~~~~~~~g~----l~dr-------~g~r~~~~~~~~~~~~~~~l~~~~--------------------- 88 (382)
T PRK10091 41 GHMISYYALGVVVGAPIIAL----FSSR-------YSLKHILLFLVALCVIGNAMFTLS--------------------- 88 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHcc-------CccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 44555566666677777776 4455 344467788888888888776654
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+++++.+..++.|++++...+.....+.+..|++.|+..++.+.....+|..+++.+.+.+.+.
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~--------------- 153 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE--------------- 153 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh---------------
Confidence 26778888899999999999998899999999999999999999999999999998888765421
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.++.+.|.+.++++++..+..+...+
T Consensus 154 -~gwr~~f~~~~~~~~~~~~~~~~~lp 179 (382)
T PRK10091 154 -FSWRYTFLLIAVFNIAVLASIYFWVP 179 (382)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12456777777766665554443333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.8e-05 Score=78.55 Aligned_cols=110 Identities=13% Similarity=0.059 Sum_probs=83.4
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++.....+..++..++.++ +.+|.+ +++.+..+.++.+++.+.....
T Consensus 53 g~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 100 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGR----LADRIG-------RKRILIVSVALFGLFSLATAQA--------------------- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------CchhHHHHHHHHHHHHHHHHHh---------------------
Confidence 34445555555566666666 455533 3356677777777766555543
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
.+++++++..++.|++.+...+...+++.+..|++.|+..+++.+....+|..+++.+...+
T Consensus 101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26777888899999999999999999999999999999999999999999999998887654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-05 Score=79.31 Aligned_cols=134 Identities=19% Similarity=0.180 Sum_probs=100.4
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+++.....+...+..++.++ +.+| .++++.+.++.++.+++.....+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~g~----l~dr-------~g~r~~l~~~~~~~~~~~~~~~~~-------------------- 82 (352)
T PF07690_consen 34 IGLLFSAFFLGSALFSPFAGY----LSDR-------FGRRRVLIIGLLLFALGSLLLAFA-------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHH-------S-HHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHH-------cCCeeeEeehhhhhhhHHHHhhhh--------------------
Confidence 344455555556667777666 4555 344467788888888884444432
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
.+.+.+++..++.|++.+...+...+++.+..|++.|+..+++.....++|..+++.+.+.+.+.
T Consensus 83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-------------- 147 (352)
T PF07690_consen 83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-------------- 147 (352)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--------------
T ss_pred -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc--------------
Confidence 14557888999999999999999999999999999999999999999999999999999976521
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 012668 423 NKGHLDYFFWLLAGLSIFNMLL 444 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~ 444 (458)
.++...|.+.+++.++..++
T Consensus 148 --~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 148 --FGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp --CHHCCHHHHHHHHHHHHHHH
T ss_pred --cccccccccccchhhhhhhh
Confidence 12345677777777777664
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.1e-05 Score=78.81 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc-ccchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN-AGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~-~gw~~~F~i 108 (458)
+...++++|++.|+|.|+..-.....++|.-|++. |+...+.+....++|..+|..++....+. ++||..+++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 88999999999999999999999999999998877 99999999999999999997666555443 599988888
Q ss_pred HHHHHHHHHHH
Q 012668 109 PALFMGFAIAS 119 (458)
Q Consensus 109 ~~i~~~l~~ii 119 (458)
..+..++..+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 77655444444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.31 E-value=3e-05 Score=76.47 Aligned_cols=117 Identities=12% Similarity=0.062 Sum_probs=87.3
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++..++.+...+..|+..+ +.+|+ ++++.+..+.++.+++.......... ..
T Consensus 37 g~~~~~~~~~~~i~~~~~G~----l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~----------------~~ 89 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGA----LADRY-------DRKKVMIGADLIRAVLVAVLPFVALL----------------GG 89 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhH----HHHhh-------chhHHHHHHHHHHHHHHHHHHHHHHc----------------CC
Confidence 34455555566667777766 44553 33356667777766666665554311 01
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
.+.+.+....++.+++.+...+...+++.+..|++.|+...+..+....+|..+|+.+.+.+.+
T Consensus 90 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 153 (365)
T TIGR00900 90 LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA 153 (365)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2667778889999999999999999999999999999999999999999999999999887753
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-05 Score=79.96 Aligned_cols=139 Identities=11% Similarity=0.055 Sum_probs=98.0
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++.....+...+..|+.++ +.+|+ .+++.+..+.++.+++.+..... .
T Consensus 49 ~~~~~~~~~~~~~~~~~g~----l~d~~-------g~r~~~~~~~~~~~~~~~~~~~~---------------------~ 96 (471)
T PRK10504 49 MVIVSYVLTVAVMLPASGW----LADRV-------GVRNIFFTAIVLFTLGSLFCALS---------------------G 96 (471)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHh-------chHHHHHHHHHHHHHHHHHHHHh---------------------C
Confidence 3344444444556666666 45553 23355666777777776655442 2
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+.+.+++..+++|+|.+...|...+.+.+..|++.++...|+.....++|..+|+.+.+.+.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~---------------- 160 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY---------------- 160 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh----------------
Confidence 6677788899999999999999999999999999999999999999999999999999877531
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012668 425 GHLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
.++.+.|.+...++.+..+......++
T Consensus 161 ~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 161 ASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 124566776666655555554444333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.7e-05 Score=74.02 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=70.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhh
Q 012668 300 SELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAM 379 (458)
Q Consensus 300 ~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~ 379 (458)
...+.+.+++++..+..+...+.+ ...-+.+.-.+.++..+-+...+=++..+.+|++.
T Consensus 316 g~k~vl~~~lvi~~~~~~~~~~~~---------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k 374 (438)
T COG2270 316 GSKPVLMIGLVILSIAALYLIFLE---------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK 374 (438)
T ss_pred CCceeehHHHHHHHHHHHHHHHcc---------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc
Confidence 333556677776666655555542 11223345578888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc
Q 012668 380 RSLCSALSLLTTALGNYLSSFILTVVTYFTT 410 (458)
Q Consensus 380 ~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~ 410 (458)
.++..|++++..-.++.+|+.+.+.+.+.+.
T Consensus 375 ~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 375 EGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred ccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999987664
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.2e-05 Score=77.57 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=86.9
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++..+..+...+..++.++ +.+|. .+++.+.++.++.+++.+...+.
T Consensus 50 g~~~~~~~~~~~~~~~~~G~----l~Dr~-------g~r~~~~~~~~~~~~~~~~~~~~--------------------- 97 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGL----WGDRY-------GRRLPMVTSIVLFSAGTLACGFA--------------------- 97 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHh-------ccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 44455555555666676666 44553 33356677877777777766654
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+++.+....++.|++++...+...+++.+..|++.|+..+++.+....+|..+++.+.+.+.
T Consensus 98 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 98 PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 266777888999999999999999999999999999999999999999999999999888765
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.6e-06 Score=88.53 Aligned_cols=172 Identities=12% Similarity=0.121 Sum_probs=109.6
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------h--
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRL--A-------R-- 331 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~--~-------~-- 331 (458)
.+++.+.+.+.-.+..++..+ +.+| .++++.+.+|.++.++|.++..+.+.....+ . +
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~----~~~r-------~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSY----FGTK-------LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHH----hhcc-------cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 455566666666666666665 4444 3344667889999999988887654211000 0 0
Q ss_pred --hhcccCCC---------------CCc--cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHH
Q 012668 332 --ELELVDQN---------------VSV--PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTA 392 (458)
Q Consensus 332 --~~~~~~~~---------------~~~--~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ 392 (458)
+.++-..+ ... ...+..++++.+++|+|++...+.+.+++.+..|++.|+.+.|+++....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 00000000 000 11345567799999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHhhhhhhhhc-c-----------CCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012668 393 LGNYLSSFILTVVTYFTT-A-----------GGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 393 ig~~ig~~l~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
+|..+|+.+++.+.+... . ++|..|. +..+..|.+.++++++..+.++++.++
T Consensus 219 iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWi------GaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWI------GAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred hhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHH------HHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999998765321 0 0011111 123344677777777766665555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-05 Score=79.18 Aligned_cols=138 Identities=14% Similarity=0.069 Sum_probs=101.1
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++..++.+...+..++..+ +.+|.++| +.+..+.++.+++.......
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~----l~d~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 79 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGW----LLDRFGAR-------KTLAVFIVIWGVFTGLQAFA--------------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHH----HHHhcCcc-------eeeHHHHHHHHHHHHHHHHH---------------------
Confidence 44555566666667777666 44554322 34566777777776666554
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+++.+++..++.|++.+...+...+++.+..|++.|+..+++......+|..+++.+.+.+.+..
T Consensus 80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------- 145 (399)
T TIGR00893 80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-------------- 145 (399)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC--------------
Confidence 267778889999999999999999999999999999999999999999999999999988654211
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhh
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
++.+.|.+.++++++..+..++..
T Consensus 146 --~~~~~~~~~~~~~~~~~~~~~~~~ 169 (399)
T TIGR00893 146 --SWQWAFIIEGVLGIIWGVLWLKFI 169 (399)
T ss_pred --CchHHHHHHHHHHHHHHHHhhhee
Confidence 135667777777666665554433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5e-06 Score=80.95 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=119.0
Q ss_pred ccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 012668 260 TIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQN 339 (458)
Q Consensus 260 ~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
+...+++...-++.-++..|+++. +.+| +.....+.+|++++..+-+++++++
T Consensus 105 ~~~iG~LFaskA~~qllvnp~~G~----l~~~-------iGy~ipm~~Gl~vmf~sTilFafg~---------------- 157 (464)
T KOG3764|consen 105 NTQIGLLFASKALVQLLVNPFFGN----LIDR-------IGYKIPMVAGLFVMFLSTILFAFGN---------------- 157 (464)
T ss_pred ccchhHHHHHHHHHHHHhcccchh----hHHH-------hccccHHHHHHHHHHHHHHHHHHcc----------------
Confidence 344555555566666666677766 3444 3444678999999999999999985
Q ss_pred CCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhh-HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCC
Q 012668 340 VSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAM-RSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWI 418 (458)
Q Consensus 340 ~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~-~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~ 418 (458)
+++.++++..++|+|..++...+++.+.|..|++. ||.++|+..-..++|-.+|+.+++.+.+...
T Consensus 158 -----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-------- 224 (464)
T KOG3764|consen 158 -----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-------- 224 (464)
T ss_pred -----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC--------
Confidence 66788899999999999999999999999999987 5999999999999999999999998875432
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012668 419 PDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 419 ~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
...-|.++++++++...+-+++.+..+..
T Consensus 225 --------k~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 225 --------KSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred --------CcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 23449999999999998887777665543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00013 Score=73.66 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=94.8
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+..+..+...+..|+.++ +.+|. .+++.+..+.++.+++.++.... .+
T Consensus 59 ~~~~~~~~~~~~~~~~g~----l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~---------------------~~ 106 (408)
T PRK09874 59 VFSITFLFSAIASPFWGG----LADRK-------GRKIMLLRSALGMGIVMVLMGLA---------------------QN 106 (408)
T ss_pred HHHHHHHHHHHHHHHHHH----Hhhhh-------CcHHHHHHHHHHHHHHHHHHHHH---------------------hh
Confidence 344455555666666666 44443 23355667777777777665543 26
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
++++++..++.+++.+. .+...+.+.+..|++.|+...+.......+|..+++.+.+.+.+..
T Consensus 107 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------------- 169 (408)
T PRK09874 107 IWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY---------------- 169 (408)
T ss_pred HHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 67777888888888654 5777888899999999999999999999999999999988765321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 426 HLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
++...|.+.+++.++..+..++..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 170 GLRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2355677777776666665544443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.7e-05 Score=75.06 Aligned_cols=133 Identities=8% Similarity=0.038 Sum_probs=95.1
Q ss_pred hhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHH
Q 012668 270 DVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQ 349 (458)
Q Consensus 270 n~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 349 (458)
..+...+.+++... +.+|++ +++.+..+.++.+++.+..... .+++++
T Consensus 60 ~~~~~~~~~~~~G~----l~dr~G-------rr~~l~~~~~~~~~~~~~~~~a---------------------~~~~~l 107 (413)
T PRK15403 60 YLAGGMALQWLLGP----LSDRIG-------RRPVLITGALIFTLACAATLFT---------------------TSMTQF 107 (413)
T ss_pred HHHHHHHHHHhhhH----HHHHcC-------chHHHHHHHHHHHHHHHHHHHc---------------------CCHHHH
Confidence 33333445555554 555543 3356677777777777666553 267788
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHH
Q 012668 350 IPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDY 429 (458)
Q Consensus 350 i~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (458)
++..+++|++++...+.....+.+..|++.+++.++++.....+|..+|+.+++.+.+. .++.+
T Consensus 108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~----------------~gw~~ 171 (413)
T PRK15403 108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF----------------VHWKV 171 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------cCHHH
Confidence 88999999999887777788888899999999999999999999999999988876521 12456
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 012668 430 FFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 430 ~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.|.+.+++.++..+..++..+
T Consensus 172 ~f~~~~~~~~i~~~~~~~~lp 192 (413)
T PRK15403 172 LFAIIAVMGLIAFVGLLLAMP 192 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 777777777766655444333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.8e-06 Score=71.26 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++..++.|++.+...+...+.+.|.+|+++ |+++++++....++|..++|.+++++.+..+|++.|++.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 56677888899999999999999999999999877 999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHh
Q 012668 110 ALFMGFAIASFFS 122 (458)
Q Consensus 110 ~i~~~l~~ii~~~ 122 (458)
+...+++.+...+
T Consensus 124 ~~~~~~~~~~~~~ 136 (141)
T TIGR00880 124 AILALAAFILLAF 136 (141)
T ss_pred HHHHHHHHHHHhh
Confidence 8766666555433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00049 Score=72.96 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc-------------
Q 012668 33 VFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN------------- 99 (458)
Q Consensus 33 ~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~------------- 99 (458)
.++++.++.|+|+.+..|.-.+.+=|-..+++ -...+++++...-+|+++|.++|++..+-
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~ 312 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITP 312 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCC
Confidence 67899999999999999999999888877766 68899999999999999999999987442
Q ss_pred -----c-cchhhhHHHHHHHHHHHHHHHhcCcce
Q 012668 100 -----A-GWGLGFGIPALFMGFAIASFFSGTSLY 127 (458)
Q Consensus 100 -----~-gw~~~F~i~~i~~~l~~ii~~~~~~~~ 127 (458)
+ .|+..|++++.+.++..+.++++-|..
T Consensus 313 ~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 313 TDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 1 388899999988888777777666544
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00013 Score=73.64 Aligned_cols=133 Identities=15% Similarity=0.080 Sum_probs=91.8
Q ss_pred cchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhH
Q 012668 268 SFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIF 347 (458)
Q Consensus 268 ~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 347 (458)
....+...+..++.+. +.+|+ ++++.+.++.++.+++.+..... .+++
T Consensus 55 ~~~~~~~~~~~~~~G~----l~dr~-------g~r~~l~~~~~~~~~~~~~~~~~---------------------~~~~ 102 (406)
T PRK15402 55 TAYLAGGMFLQWLLGP----LSDRI-------GRRPVMLAGVAFFILTCLAILLA---------------------QSIE 102 (406)
T ss_pred HHHHHHHHHHHHHHHH----HHHHh-------CChHHHHHHHHHHHHHHHHHHHH---------------------ccHH
Confidence 3334444455555555 45553 33356677777777776665543 2566
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchh
Q 012668 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHL 427 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
.++...++.|++.+...+...+.+.+..|++.++..+++......++..+|+.+.+.+.+.. +|
T Consensus 103 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------~w---------- 166 (406)
T PRK15402 103 QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL------PW---------- 166 (406)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------Cc----------
Confidence 77778899999999988999999999999999999999988888888899988887664311 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 012668 428 DYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 428 ~~~f~~~a~i~~~~~v~~~~~ 448 (458)
...|.+.++++++..+..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~ 187 (406)
T PRK15402 167 RGMFVLFAALAALSFFGLWRA 187 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHh
Confidence 455666676666665544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00013 Score=73.35 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=96.5
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
...+..+...+..|+.++ +.+|.+ +++.+..+.++.+++....... .+
T Consensus 43 ~~~~~~~~~~~~~~~~G~----l~Dr~g-------~r~~l~~~~~~~~i~~~~~~~~---------------------~~ 90 (392)
T PRK10473 43 AFSVYLAGMAAAMLFAGK----IADRSG-------RKPVAIPGAALFIIASLLCSLA---------------------ET 90 (392)
T ss_pred HHHHHHHHHHHHHHhHhH----HHHHhC-------ChHHHHHHHHHHHHHHHHHHHh---------------------Cc
Confidence 334444445566677776 444433 2356677777777777766543 25
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
.++++...++++++.+...+...+++.+..|++.|+...+..+....++..+++.+.+.+.+. .
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~----------------~ 154 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK----------------F 154 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------c
Confidence 666777889999999999999999999999999999999999999999999998888765421 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 012668 426 HLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
++...|.+.++++++..++.+...
T Consensus 155 g~~~~~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 155 PWQSLFYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHc
Confidence 235566777766666665544433
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00068 Score=71.38 Aligned_cols=82 Identities=13% Similarity=0.023 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHH-HhHhhhhccccccchhhhH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALI-SSSLIVWIQDNAGWGLGFG 107 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~i-gp~l~g~l~~~~gw~~~F~ 107 (458)
.+.+.+++.+++.|+|.+.+.+.....+.++|| ++ |+++.++.....++|+++ +++..+++.+ +|++.|+
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl 188 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF 188 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 378888999999999999999999999999996 44 899999999999999975 6666666653 6788788
Q ss_pred HHHHHHHHHHHH
Q 012668 108 IPALFMGFAIAS 119 (458)
Q Consensus 108 i~~i~~~l~~ii 119 (458)
+.++..++..++
T Consensus 189 ~l~vl~~vv~ll 200 (591)
T PTZ00207 189 FLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHH
Confidence 777655544444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.9e-05 Score=81.50 Aligned_cols=144 Identities=13% Similarity=0.008 Sum_probs=95.6
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++.....+.-.+.+++.++ +.+|+ ++++.+.++.++.+++.+..+..... ...
T Consensus 68 ~~~s~~~~~~~~~~~~~G~----l~Dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~----------------~~~ 120 (467)
T PRK09556 68 MIGLGFSITYGVGKTLVGY----YADGK-------NTKQFLPFLLILSAICMLGFGASLGS----------------GSV 120 (467)
T ss_pred HHHHHHHHHHHHHHhhhhh----Hhhcc-------CccchHHHHHHHHHHHHHHHHHHHhc----------------ccc
Confidence 3344444444456666666 45554 33456667777766666555542110 013
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+.+.+++..++.|++++...|...+++.+..|++.||.++|++.....+|..+++.+........ . .
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~--------~-----~ 187 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF--------F-----D 187 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh--------c-----c
Confidence 67778888999999999999999999999999999999999999999999999988775443210 0 0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q 012668 425 GHLDYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~ 448 (458)
++....|.+.++++++..++.+++
T Consensus 188 ~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 188 GHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHh
Confidence 112344666666666555554444
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00017 Score=72.74 Aligned_cols=134 Identities=9% Similarity=0.017 Sum_probs=93.7
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+...+.+...+..++..+ +.+|+ ++++.+..+.++.+++.++..+. .+
T Consensus 47 ~~s~~~~~~~i~~~~~g~----l~dr~-------g~r~~~~~~~~~~~i~~~l~~~~---------------------~~ 94 (394)
T PRK03699 47 TFTFLNAGILISIFLNAW----LMEII-------PLKRQLIFGFALMILAVAGLMFS---------------------HS 94 (394)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHh-------hHHHHHHHHHHHHHHHHHHHHHc---------------------ch
Confidence 334444444555566665 44443 33356677777777777766653 25
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
.+++++..++.+++.+...+...+.+.+..|++.|+..++..+....+|..+++.+.+.+... ..
T Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------------~~ 159 (394)
T PRK03699 95 LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR---------------SI 159 (394)
T ss_pred HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------cc
Confidence 667778889999999999999999999999999999999999888899998888887755310 01
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 012668 426 HLDYFFWLLAGLSIFNMLLYV 446 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~ 446 (458)
++.+.|...+++.++..++.+
T Consensus 160 gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 160 EWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 245667776766665554433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.9e-05 Score=73.95 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=97.5
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012668 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
.....+...+..++..+ +.+|+ ++++.+..+.++.+++.......+ +.
T Consensus 32 ~~~~~~~~~~~~~~~g~----l~d~~-------g~~~~~~~~~~~~~i~~~~~~~~~---------------------~~ 79 (377)
T PRK11102 32 LSAYILGFAIGQLFYGP----MADSF-------GRKPVILGGTLVFALAAVACALAQ---------------------TI 79 (377)
T ss_pred HHHHHHHHHHHHHhhch----HHhhc-------CChHHHHHHHHHHHHHHHHHHHHc---------------------cH
Confidence 33444444555566555 44553 334567788888888877776542 55
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
+.++...++.+++.+...+...+++.+..|++.|+..+++++....+|..+++.+.+.+.+.. +
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------~ 143 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF----------------S 143 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------------C
Confidence 667778899999999999999999999999999999999999999999999999888765321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 012668 427 LDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
+...|.+.++++++..+...+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~ 166 (377)
T PRK11102 144 WHAIFWVLALAAILAAALVFFFI 166 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567776766666655544433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.1e-05 Score=76.47 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=82.5
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+..+..+..++..++..+ +.+|. ++++.+..+.++.+++.++.... .+
T Consensus 57 ~~~~~~~~~~~~~~~~g~----l~d~~-------g~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 104 (398)
T TIGR00895 57 LFSAGLIGMAFGALFFGP----LADRI-------GRKRVLLWSILLFSVFTLLCALA---------------------TN 104 (398)
T ss_pred HHHHHHHHHHHHHHHhHH----HHHHh-------hhHHHHHHHHHHHHHHHHHHHHc---------------------cc
Confidence 334444444455555555 44443 33356677777777776666543 25
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+.+++..++.+++.+...+...+++.+..|++.|+..+++......+|..+++.+.+.+.
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 6667788999999999999999999999999999999999999999999999999888664
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00027 Score=71.78 Aligned_cols=115 Identities=13% Similarity=0.029 Sum_probs=89.9
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+++.....+...+..+...+ +.+|+ .+++.+.+|.++.+++.++......
T Consensus 40 ~g~l~s~~~~g~~i~~~~~g~----l~~r~-------G~r~~~~~g~~l~~~g~~l~~~~~~------------------ 90 (410)
T TIGR00885 40 AALVQSAFYGGYFIMAIPAAI----FMKKL-------SYKAGILLGLFLYALGAFLFWPAAE------------------ 90 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHh-------CchHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 344555555666666676666 55663 3446788899998888777544321
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
..++++++...++.|+|.++..+..+.++.+..|++.+++.+++.+..+++|..+|+.+...+.
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256777788999999999999999999999999999999999999999999999999988774
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.3e-05 Score=77.40 Aligned_cols=140 Identities=10% Similarity=-0.024 Sum_probs=97.8
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+.........+..++.++ +.+|+ ..+++.+.++.++.+++.+++.... +
T Consensus 53 ~~~~~~~~~~~~~~~~G~----laDr~------~G~~~~l~~~~~~~~~g~~~~~~~~---------------------~ 101 (475)
T TIGR00924 53 IFGAYSALVYLLTSVGWW----FGDRV------WGTKKTMVLGGIVLMLGHFMLAMSI---------------------Y 101 (475)
T ss_pred HHHHHHHHHHHHHhhHHH----HHHhh------cchHHHHHHHHHHHHHHHHHHHhcc---------------------c
Confidence 334444444455555555 44442 2333567888888888887776532 4
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh---hHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA---MRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~---~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
.+.+++...+.++|+++..|...+++.+..|++ .|+...++++...++|..+|+.+.+.+.+..
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~------------- 168 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY------------- 168 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 556667888999999999999999999999875 4888999999999999999999999775311
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012668 423 NKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
+++..|.+.++..+++.+.++...+.+
T Consensus 169 ---g~~~~f~~~~~~~~~~~l~~~~~~~~~ 195 (475)
T TIGR00924 169 ---GYHVGFNLAAVGMVIGLLTFFAGRHML 195 (475)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHccccc
Confidence 245667776666566655555444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00021 Score=71.66 Aligned_cols=112 Identities=9% Similarity=0.059 Sum_probs=87.0
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+++.....+...+..|+..+ +.+|+ .+++.+..+.++.+++.......+
T Consensus 43 ~G~~~s~~~l~~~~~~~~~g~----l~dr~-------g~k~~~~~~~~~~~~~~~~~~~~~------------------- 92 (381)
T PRK03633 43 VGVVSSSYFTGNLVGTLLAGY----VIKRI-------GFNRSYYLASLIFAAGCAGLGLMV------------------- 92 (381)
T ss_pred HHHHHHHHHHHHHHHHHhHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 344555555555666666666 44443 333567788888888877766542
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+.+++..++.|++.+...|...+.+.+..|++.|++.++.+....++|..+|+.+.+.+.
T Consensus 93 --~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 93 --GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66777888999999999999998888888999999999999999999999999999988664
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.8e-06 Score=83.35 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++..++.|++.+...|.....+.|.+|+++ |++++++++...++|..++|.+.|++.++.||++.|++.
T Consensus 301 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 374 (399)
T PRK05122 301 SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAA 374 (399)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 45566778889999999988988888888887765 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCc
Q 012668 110 ALFMGFAIASFFSGTS 125 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~ 125 (458)
+...+++++..+..++
T Consensus 375 ~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 375 ALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8877777766555444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.9e-05 Score=77.38 Aligned_cols=106 Identities=8% Similarity=0.006 Sum_probs=79.1
Q ss_pred hhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHH
Q 012668 272 ISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIP 351 (458)
Q Consensus 272 ~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 351 (458)
....++.++.++ +.+|+ ..+++.+.+|.++.+++.+.+.+.. .....++.
T Consensus 61 ~~~~~~~~~~G~----laDr~------~G~r~~~~~g~~~~~~g~~~~~~~~--------------------~~~~ll~~ 110 (489)
T PRK10207 61 ALVYGLISIGGY----VGDHL------LGTKRTIVLGAIVLAIGYFMTGMSL--------------------LKPDLIFI 110 (489)
T ss_pred HHHHHHHhhHHH----hhhhc------cchHHHHHHHHHHHHHHHHHHHHhc--------------------cchhHHHH
Confidence 334444556666 44542 2334678899999988887777532 11222446
Q ss_pred HHHHHhHHHHHhhhhhhhhhhcccchh--hHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 352 QYFLLGAAEVCTFIGQLEFFYDQSPDA--MRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 352 ~~~l~g~ge~l~~~~~~~~~~~~aP~~--~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
..+++++|+++..|...+++.++.|++ .|+...+.+.+..++|..+|+.+++.+.+
T Consensus 111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999887 45778999999999999999999998763
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00018 Score=73.57 Aligned_cols=144 Identities=14% Similarity=0.029 Sum_probs=95.5
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++..+..+...+..++..+ +.+|.+ +++.+..+.++.+++.+....... ..
T Consensus 64 g~~~~~~~~~~~~~~~~~G~----l~dr~g-------~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 115 (438)
T TIGR00712 64 GFALSAISIAYGFSKFIMGS----VSDRSN-------PRVFLPAGLILSAAVMLLMGFVPW-----------------AT 115 (438)
T ss_pred HHHHHHHHHHHHHhhhccch----hhhccC-------CceehHHHHHHHHHHHHHHhcccc-----------------cc
Confidence 33444444445555566666 455543 224556677777777666544310 01
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+.+.+.+..++.+++++...+...+.+.+..|++.||..+|+++...++|..+++.+.+......
T Consensus 116 ~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-------------- 181 (438)
T TIGR00712 116 SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-------------- 181 (438)
T ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh--------------
Confidence 244556667889999999999999999999999999999999999999999999887766432110
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.++...|.+.++++++..++.+++.+
T Consensus 182 -~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 182 -NDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12356677777777776655544443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00014 Score=70.99 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=99.0
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
++......+...+..|+..+ +.+|.++ ++.+.++.++..++.......+
T Consensus 37 ~~~~~~~~~~~~~~~~~~g~----~~d~~g~-------r~~~~~~~~~~~~~~~~~~~~~-------------------- 85 (352)
T cd06174 37 GLIVSAFSLGYALGSLLAGY----LSDRFGR-------RRVLLLGLLLFALGSLLLAFAS-------------------- 85 (352)
T ss_pred HHHHHHHHHHHHHHHHhHHH----HHHHhCC-------chhhHHHHHHHHHHHHHHHHhc--------------------
Confidence 34455555555666677666 4455332 3467788888888877766542
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
+.+.+++..++.+++.+...+...+++.+..|++.|+..++.......+|..+++.+.+.+.+..
T Consensus 86 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------- 150 (352)
T cd06174 86 -SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-------------- 150 (352)
T ss_pred -cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 66778889999999999999999999999999999999999999999999999999998775321
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLY 445 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~ 445 (458)
+....|.+.+++.++..+..
T Consensus 151 --~~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 151 --GWRWLFLILAILGLLLALLL 170 (352)
T ss_pred --hHHHHHHHHHHHHHHHHHHH
Confidence 13455666666555555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00019 Score=72.45 Aligned_cols=110 Identities=14% Similarity=0.008 Sum_probs=87.3
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++.+.+.+...+.+|+..+ +.+|+ .+++.+..+.++.+++.+...+.+
T Consensus 47 g~~~s~~~~~~~l~~~~~g~----l~dr~-------G~r~~l~~~~~l~~~~~~~~~~a~-------------------- 95 (393)
T PRK09705 47 ALLTALPVVTMGGLALAGSW----LHQHV-------SERRSVAISLLLIAVGALMRELYP-------------------- 95 (393)
T ss_pred HHHHHHHHHHHHHHhhhhHH----HHHHh-------CchHHHHHHHHHHHHHHHHHHHCc--------------------
Confidence 44455555556666677666 45553 444778899999999998887753
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+++.+++..+++|+|++...+...+.+.+..| +.|+.++|.+......|..+|+.+.+.+.
T Consensus 96 -~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 96 -QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred -chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888999999999999999999988887 77999999999999999999998888654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.1e-05 Score=77.89 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=96.7
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
.+..+..+...+..++..+ +.+|.+ +++.+.++.++.+++.++.....
T Consensus 34 ~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~~--------------------- 81 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGS----VSDRSN-------PRVFLPIGLILCAIVNLFFGFST--------------------- 81 (379)
T ss_pred HHHHHHHHHHHhhhhhhhH----HHHhhC-------CeehhHHHHHHHHHHHHHHHHhh---------------------
Confidence 3444444555555666665 445533 33567788888888877776642
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhH-HhhhhhhhhccCCCcCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSF-ILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~-l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
+.+.+++..++.+++.+...+...+++.+..|++.|+..+++++....+|..+++. +...+...
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------------- 146 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL--------------- 146 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc---------------
Confidence 66777888999999999999999999999999999999999999999999999984 44433211
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhh
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
.+....|.+.++++++..++.++..
T Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 147 -YSWHWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred -CCchhHHHHHHHHHHHHHHHHheee
Confidence 1124556776766666555554443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00042 Score=69.66 Aligned_cols=134 Identities=10% Similarity=0.011 Sum_probs=92.6
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
......+...+..++.+. +.+|+ ++++.+..+.++.+++.+..... .+
T Consensus 48 ~~~~~~~~~~~~~~~~G~----l~Dr~-------grr~~~~~~~~~~~~~~~~~~~~---------------------~~ 95 (394)
T PRK11652 48 VMAAYLLTYGLSQLFYGP----LSDRV-------GRRPVILVGMSIFILGTLVALFA---------------------HS 95 (394)
T ss_pred HHHHHHHHHHHHHHhhhh----HHHhc-------CChHHHHHHHHHHHHHHHHHHHH---------------------cc
Confidence 334444445556666665 45553 33355677777777776665443 25
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
.+.+++..++.|++.+...+...++..+..|++.++...+.++....++..+++.+.+.+.+..
T Consensus 96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~---------------- 159 (394)
T PRK11652 96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF---------------- 159 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------
Confidence 6777788899999998888888889999999999999999999999999999998888764211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 012668 426 HLDYFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~ 447 (458)
++...|.+.++++++..+...+
T Consensus 160 g~~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK11652 160 GWRACYLFLLLLGAGVTFSMAR 181 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 1355666666655544444333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0002 Score=71.59 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+++++++..+++|+|++. .+.....+.+..|++.|++++++.+....+|..+++.++..+.+.. +
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~------g-------- 142 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG------G-------- 142 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------c--------
Confidence 678889999999999996 4566666789999999999999999999999999999888775311 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012668 425 GHLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
....|.+.++++++..++.++..+.
T Consensus 143 --Wr~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 143 --LQLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3667878788777776665555443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00056 Score=74.14 Aligned_cols=110 Identities=11% Similarity=0.033 Sum_probs=83.4
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++..+..+..++..++..+ +.+|+ .+++.+.++.++.+++.++..+..
T Consensus 206 ~l~s~~~lG~iiG~li~G~----LsDR~-------GRR~~lii~lil~~i~~ll~afa~--------------------- 253 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGG----LADKL-------GRKQCLLICLSVNGFFAFFSSFVQ--------------------- 253 (742)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3444444555555555555 55553 333566777777777666665432
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+++++++..++.|+|.+...|....++.+..|++.||..++++.....+|.++++.+...+.
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888999999999999999999999999999999999999999999999988776554
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00038 Score=68.97 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=81.9
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+++..+..+...+..++..+ +.+|++ +++.+.++.++.+++.++....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~i~~~~~~~~~------------------- 88 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGF----LVDKFG-------PRYTTTLSLLLLAIPCLWAGLAV------------------- 88 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHH----HHHHhC-------chHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 344555566666667777776 445533 33567788888888887776542
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+++.+++..+++|++.+.. +....++.+..|++.|+..++++....++|..+++.+.+.+.
T Consensus 89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 15566777888899987654 567889999999999999999999888888888877776554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00024 Score=71.35 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=82.9
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+.+.....+...+.+|+.++ +.+|+ ++++.+.++.+..+++.+........ . ....
T Consensus 54 g~~~s~~~~~~~i~~~~~G~----l~Dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~-----------~--~~~~ 109 (392)
T PRK12382 54 GIAVGIQFLATVLTRGYAGR----LADQY-------GAKRSALQGMLACGLAGLAYLLAAIL-----------P--VSAP 109 (392)
T ss_pred HHHHHHHHHHHHHHhhhhhH----HHHhh-------cchHHHHHHHHHHHHHHHHHHhhhcc-----------c--cchh
Confidence 44455555666677777777 44553 33356667766655554332221000 0 0001
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+.+++++..+++|+|.+...+...+++.+..|++.|+..++.+......|..+|+.+.+.+.
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 256777888999999999999999999999999999999999999999999999999988764
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00047 Score=70.05 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=86.6
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+....+..+...+..|+..+ +.+|. ++++.+.++.++.+++.......+
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~----l~dr~-------g~r~~l~~~~~~~~~~~~~~~~~~-------------------- 104 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGL----LADKF-------GRKPLMMWSIVAYSVGTGLSGLAS-------------------- 104 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHh-------CChHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 33444555555566666666 55553 334667888888888877766643
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+.+++..++.|+|.+...+....++.+..|++.|+..++++.....+|..+++.+.+.+.
T Consensus 105 -~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 105 -GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred -HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 66778888999999999999999999999999999999999999999999999988777553
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00041 Score=72.02 Aligned_cols=109 Identities=14% Similarity=0.191 Sum_probs=83.7
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+.....+...+..++..+ +.+|. .+++.+.++.++.+++.+...+.. +
T Consensus 60 ~~~~~~~~~~~~~~~~g~----l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~---------------------~ 107 (496)
T PRK03893 60 LISAAFISRWFGGLLLGA----MGDRY-------GRRLAMVISIVLFSVGTLACGFAP---------------------G 107 (496)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHHh---------------------H
Confidence 333344444455555555 45553 333566778777888877776542 6
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+++.+..++.|++.+...+....++.+..|++.|+..++++....++|+.+++.+.+.+.
T Consensus 108 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 108 YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777888999999999999999999999999999999999999999999999999888764
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00025 Score=73.92 Aligned_cols=116 Identities=6% Similarity=-0.034 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhh-
Q 012668 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAM- 379 (458)
Q Consensus 301 ~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~- 379 (458)
+++.+.+|.++.+++..++.+.. .+.+.+.+...++++|.++..|...+++.+..|++.
T Consensus 87 ~r~~~~~g~~~~~ig~~l~~~~~--------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~ 146 (500)
T PRK09584 87 TKRVIMLGAIVLAIGYALVAWSG--------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP 146 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch
Confidence 34567788888888876665431 133445567889999999999999999999988643
Q ss_pred -HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012668 380 -RSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 380 -~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
++...++++...++|..+|+.+.+.+.+. .++.+.|.+.++..+++.+.+++..+++
T Consensus 147 ~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~----------------~g~~~~F~i~~i~~~i~~i~~~~~~~~~ 204 (500)
T PRK09584 147 RLDGAFTMYYMSINIGSFFSMLATPWLAAK----------------YGWSVAFALSVVGMLITVVNFAFCQRWV 204 (500)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHh----------------hCHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 44578889999999999999999977531 1246677776665566665555544443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00054 Score=69.09 Aligned_cols=134 Identities=13% Similarity=0.043 Sum_probs=93.3
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+..+..+...+..++.++ +.+|++ +++.+..+.++.+++.+..... .+
T Consensus 46 ~~s~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------~~ 93 (401)
T PRK11043 46 SLSLFLAGFALGQLLWGP----LSDRYG-------RKPVLLAGLSLFALGSLGMLWV---------------------ES 93 (401)
T ss_pred HHHHHHHHHHHHHHhhhh----HHhhcC-------CcHHHHHHHHHHHHHHHHHHHh---------------------cC
Confidence 344444444555566665 455533 3356677777777776666543 26
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
.+++++..++.|+|.....+...+.+.+..|++.++...+..+....++..+++.+.+.+.+..
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~---------------- 157 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF---------------- 157 (401)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------
Confidence 6777778899999988888888899999999999999999988888999999998888765211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 012668 426 HLDYFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~ 447 (458)
++...|.+.+++.++..+..+.
T Consensus 158 g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 158 GWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 2355666666666665554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00026 Score=69.95 Aligned_cols=138 Identities=19% Similarity=0.140 Sum_probs=95.8
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.++...+..+...+..|+.++ +.+|.++| +.+.++.++.+++.+.....+
T Consensus 40 ~g~~~s~~~~~~~~~~~~~G~----l~d~~G~r-------~~~~~~~~~~~~~~~~~~~~~------------------- 89 (377)
T TIGR00890 40 VAIWFTLLLIGLAMSMPVGGL----LADKFGPR-------AVAMLGGILYGLGFTFYAIAD------------------- 89 (377)
T ss_pred HHHHHHHHHHHHHHHhhhhHH----HHHHcCcc-------chhHHhHHHHHHHHHHHHHHH-------------------
Confidence 344455555555666677676 45554332 456778888888887766653
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
+++.+.+...+.|++++...+.....+.+..| +.|+.+++++....++|..+++.+...+.+
T Consensus 90 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------------- 151 (377)
T TIGR00890 90 --SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN--------------- 151 (377)
T ss_pred --HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh---------------
Confidence 66777778889999999888888888888777 469999999999999998876666554431
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012668 423 NKGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
..++...|.+.++++++..+..++..
T Consensus 152 -~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 152 -LEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 12246677777777776665554443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.6e-06 Score=90.57 Aligned_cols=93 Identities=18% Similarity=0.288 Sum_probs=3.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc----------
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN---------- 99 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~---------- 99 (458)
-...++++.++.|+|+.+..|.-.+.+=|..++++ -+..+++++....+|+++|.++|+...+.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 45778899999999999999999999999988877 68899999999999999999999876431
Q ss_pred -----------cc-chhhhHHHHHHHHHHHHHHHhcCccee
Q 012668 100 -----------AG-WGLGFGIPALFMGFAIASFFSGTSLYR 128 (458)
Q Consensus 100 -----------~g-w~~~F~i~~i~~~l~~ii~~~~~~~~~ 128 (458)
+| |+..|.+.+...++..+-++++-|+++
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 23 889999998877766666666555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00056 Score=70.33 Aligned_cols=140 Identities=15% Similarity=0.022 Sum_probs=90.8
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012668 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
.....+...+.+|+.++ +.+|. .+++.+.++.++.+++.+...+.... ..+.
T Consensus 69 ~~~~~i~~~~~~~~~G~----l~Dr~-------g~k~~l~~~~~~~~i~~~~~~~~~~~-----------------~~~~ 120 (452)
T PRK11273 69 LSGISIAYGFSKFIMGS----VSDRS-------NPRVFLPAGLILAAAVMLFMGFVPWA-----------------TSSI 120 (452)
T ss_pred HHHHHHHHHHHHhhhhh----hhhcc-------CCchhHHHHHHHHHHHHHHHHhhhcc-----------------cccH
Confidence 33344444556666666 45553 33356778888887777766654210 1245
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH-hhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYL-SSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~i-g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
+.+++..++.+++++...|.....+.+..|++.|+..+|+++...++|+.+ ++.+...+.. . .
T Consensus 121 ~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~---------------~ 184 (452)
T PRK11273 121 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-F---------------N 184 (452)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-h---------------c
Confidence 566777889999999988888888899999999999999999999998754 4433222210 0 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 426 HLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
++...|.+.++++++..++.++..+
T Consensus 185 gw~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 185 DWHAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 2345677777666665555444443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0002 Score=73.19 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=84.1
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++..+..+...+..++.++ +.+| ..+++.+.++.++.+++.++...... .
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~----l~d~-------~grr~~~~~~~~~~~~~~~~~~~~~~------------------~ 124 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGW----LSDR-------FGRKKSLLIIALLFVIGAILMGLAAF------------------A 124 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhH----hhhh-------hhhHHHHHHHHHHHHHHHHHHHHhcc------------------c
Confidence 34444555555566666666 4444 33446677888888887777655321 1
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFIL 402 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~ 402 (458)
.+.+.+++..++.|+|.+...+...+++.+..|++.|+..+++++....+|..+++.+.
T Consensus 125 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 24456778899999999999999999999999999999999999999999999999988
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00016 Score=73.36 Aligned_cols=117 Identities=10% Similarity=-0.049 Sum_probs=82.0
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+.+.....+..++..++.++ +.+|+++ ++.+..+.++.++++......... .
T Consensus 54 ~g~~~~~~~l~~~~~~~~~G~----l~dr~g~-------~~~l~~~~~~~~~~~~~~~~~~~~----------------~ 106 (417)
T PRK10489 54 VGLSVTLTGGAMFIGLMVGGV----LADRYDR-------KKLILLARGTCGLGFIGLALNAFL----------------P 106 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhHH----HhhhcCC-------ceEEEehHHHHHHHHHHHHHHHHc----------------C
Confidence 344555555555666666666 4455332 233445666666655554332100 0
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
..+.+++.+..++.+++.++..+...+.+.+..|++.++...+++....++|..+|+.+.+.+.
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 1255666778888999999999999999999999999999999999999999999999998765
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00055 Score=69.05 Aligned_cols=109 Identities=15% Similarity=0.072 Sum_probs=84.1
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+++.....+...++.|+.++ +.+|++ +++.+.++.++.+++.+......
T Consensus 40 ~~~~~~~~~l~~~l~~~~~G~----laDr~g-------rr~vl~~~~~~~~~~~~~~~~~~------------------- 89 (393)
T PRK11195 40 QPLLQMFFVLAYIVLAPFVGA----FADSFP-------KGRVMFIANGIKLLGCLLMLFGI------------------- 89 (393)
T ss_pred HHHHHHHHHHHHHHHHhhhhH----hhhccC-------CchhhHHHHHHHHHHHHHHHHHH-------------------
Confidence 345555666666777888887 555543 33566777777766655544321
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+. +...+++|+++++..|...+++.+..|++.|+.+.|.+.....+|..+|+.+++.+.
T Consensus 90 --~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 90 --HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred --HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 456788999999999999999999999999999999999999999999999999875
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00013 Score=72.03 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=98.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
.++++.+.+|+++.++..+++++.+ |.+.+++..++.|.-.++-.|+....+.+-.|++
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs~---------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~ 149 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFSP---------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK 149 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhhh---------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc
Confidence 6777889999999999999999863 7788888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHh--hhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012668 379 MRSLCSALSLLTTALGNYLSSFIL--TVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
.||+..++|+.+.++|+.+.+.+. +.+... .+....|.+-++++++..++.+...|..
T Consensus 150 eRG~~~siWn~shNiGGal~~~~~~la~~~~~----------------~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 150 ERGTWWSIWNTSHNIGGALAPLVALLAFFAFH----------------GGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred ccCceEEEehhhhhcccchHHHHHHHHHHHhc----------------cchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999998 444311 1245678888888888887777665543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00068 Score=68.52 Aligned_cols=116 Identities=16% Similarity=0.061 Sum_probs=81.1
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+.....+.+...+..|+.++ +.+| .++++.+..+.++.+++.+........
T Consensus 50 ~g~~~~~~~~~~~i~~~~~g~----l~dr-------~g~k~~l~~~~~~~~~~~~~~~~~~~~----------------- 101 (402)
T TIGR00897 50 SASAFTLYGIAAAISAWISGV----VAEI-------IGPLKTMMIGLLLWCVGHAAFIVFGLG----------------- 101 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHH-------cCcHHHHHHHHHHHHHHHHHHHHHhcc-----------------
Confidence 334445555555666777766 5555 344466777888777776544321100
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHH-HHhhHHhhhhh
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGN-YLSSFILTVVT 406 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~-~ig~~l~~~~~ 406 (458)
..+++.+++...+.|+|.....+...+.+.+..|++.||.++|+++...++|. .+++.+.+.+.
T Consensus 102 ~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 102 HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12455566778889999988888888889999999999999999999999996 57777766543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.4e-08 Score=102.47 Aligned_cols=83 Identities=17% Similarity=0.284 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc---ccchhhh
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN---AGWGLGF 106 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~---~gw~~~F 106 (458)
+...+.+++++.|+|.|+..+....++.+..|++. |++...+......+|.+++..++-.+.+. .+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999999999999999999999998887 99999999999999999998776544333 4599999
Q ss_pred HHHHHHHHHHHH
Q 012668 107 GIPALFMGFAIA 118 (458)
Q Consensus 107 ~i~~i~~~l~~i 118 (458)
.++++..++.++
T Consensus 175 ~~~~~~~l~~~~ 186 (451)
T PF00083_consen 175 IFGAIPSLLVLL 186 (451)
T ss_pred cccccccccccc
Confidence 988765544333
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00016 Score=74.52 Aligned_cols=132 Identities=19% Similarity=0.145 Sum_probs=92.3
Q ss_pred hhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHH
Q 012668 272 ISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIP 351 (458)
Q Consensus 272 ~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 351 (458)
+.-++.+++.++ +.+|++ +++.+..+.++.+++.++...... .+.+++++
T Consensus 87 ~~~~~~~~~~g~----l~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~-------------------~~~~~l~~ 136 (465)
T TIGR00894 87 YGQIIIQIPVGY----LAGKYV-------FKWSIGIGMFLSSVISIVIPWAAG-------------------GGIALVVF 136 (465)
T ss_pred HHHHHHHcchHH----HHHHhC-------cchhhHHHHHHHHHHHHHHHHHHH-------------------cCchHHHH
Confidence 334455555555 455543 235566777766666655443321 24566788
Q ss_pred HHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHH
Q 012668 352 QYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFF 431 (458)
Q Consensus 352 ~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 431 (458)
..+++|++++...|....++.+..|++.|+.++|+++....+|..+++.+.+.+.... .+| ...|
T Consensus 137 ~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-----~gw----------~~~f 201 (465)
T TIGR00894 137 CRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW-----GGW----------PMIF 201 (465)
T ss_pred HHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCC----------Ceeh
Confidence 8999999999999999999999999999999999999999999999999988765310 023 3456
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012668 432 WLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 432 ~~~a~i~~~~~v~~~~~ 448 (458)
.+.++++++..++.+..
T Consensus 202 ~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 202 YVFGIVGCAWSLLWFVF 218 (465)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 66666666555544443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0002 Score=72.59 Aligned_cols=143 Identities=16% Similarity=0.160 Sum_probs=104.8
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
...++-..-+++-+++.+ +.+|.+ ....+.+|+.+.++=++.+...+ +
T Consensus 411 ~~a~~~~gEI~~~ffs~k----lI~kiG-------Hv~v~~lgLa~~~~Rf~~~S~L~---------------------n 458 (618)
T KOG3762|consen 411 VSALCHAGEILFYFFSFK----LIEKIG-------HVNVMYLGLACNVGRFLYYSYLQ---------------------N 458 (618)
T ss_pred hhhhhccchHHHHHHHHH----HHHHhc-------ccceeeehhhHHHHHHHHHHHhc---------------------C
Confidence 344444444455555555 556543 33567788888888888888874 7
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHH-HHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTT-ALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~-~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+|..++-.+++++..+++..+..+++...+||+++..++|+..... ++|..+|+.+++.+....
T Consensus 459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f--------------- 523 (618)
T KOG3762|consen 459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF--------------- 523 (618)
T ss_pred chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee---------------
Confidence 7777777899999999999999999999999999999999976554 677777777777654221
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 012668 425 GHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 456 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~~ 456 (458)
+....|...++.+++..+.+..+.++.+++.
T Consensus 524 -g~~ttf~~~giAcl~~l~~~~~iq~~l~~~~ 554 (618)
T KOG3762|consen 524 -GARTTFRIFGIACLVTLALFISIQLLLKRRG 554 (618)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 2356688888888888877777777666654
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=73.08 Aligned_cols=262 Identities=15% Similarity=0.091 Sum_probs=148.3
Q ss_pred CCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHHHHHHHHHHHHhcCcc
Q 012668 47 GIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSL 126 (458)
Q Consensus 47 ~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~~l~~ii~~~~~~~ 126 (458)
.......+.++|...+++ |...+++...+...+..++|.+++++.+.+|.-.+|++++...+++.+...+..++
T Consensus 128 ~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 128 AIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred hhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 355566677888887776 99999999999999999999999999999999999999998888877765554443
Q ss_pred eeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhhhhccccccccCCCCCCC
Q 012668 127 YRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNP 206 (458)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (458)
-.+++...+ . .. +.++..++.+|-... +
T Consensus 202 sl~~~~~~~--~---------------~~--------------------~~~~~~~~~~~~~~~---------------~ 229 (463)
T KOG2816|consen 202 SLQEKERSD--A---------------TL--------------------RELTPGSLDSSHVAD---------------A 229 (463)
T ss_pred ccCcccccc--c---------------cc--------------------cccCCCcccchhhhh---------------h
Confidence 222111110 0 00 000000111110000 0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcc-cCcCcc----ccchhhhHHHHHhhh
Q 012668 207 WILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFT-IPPASL----SSFDVISVIFWVPIY 281 (458)
Q Consensus 207 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~l----~~ln~~~vi~~~pl~ 281 (458)
+..... ..+.|..+.++.........-..-.+...++ +.+..++ ++ ...+.+ +.+..+..+++.|+
T Consensus 230 ~~~~~~--~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~-----yl~~~f~-w~~~~~s~~~~~~~~~~~i~~l~~~~~- 300 (463)
T KOG2816|consen 230 FQSLTK--VGPDRLLLLLLLVAFLSSLPEAGGASDVLLL-----YLKAKFG-WNKKEFSDLLSLVSILGIISQLLLLPL- 300 (463)
T ss_pred hhhhcc--cCCCccchHHHHHHHHHHHHHhcCceeEEEE-----EEeeecC-cCHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 000000 0111211111111111100000000100000 0111111 00 001111 22222222233333
Q ss_pred hhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHH
Q 012668 282 DKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEV 361 (458)
Q Consensus 282 ~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~ 361 (458)
..+..+ ..+.+..|++.-.++..+.++.+ + .|+.....+......
T Consensus 301 -------l~~~l~------~~~~i~lGl~~~~~~~~~~af~~---------------------~-~w~~~~~~v~~~~~~ 345 (463)
T KOG2816|consen 301 -------LSSILG------EKRLISLGLLSEFLQLLLFAFAT---------------------E-TWMMFAAGVVVALAG 345 (463)
T ss_pred -------HHHHHh------hhhHhhHHHHHHHHHHHHHHHhc---------------------c-chhhhHHHHHHHhhc
Confidence 322211 11367889999999999988874 3 234455566666777
Q ss_pred HhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc
Q 012668 362 CTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTT 410 (458)
Q Consensus 362 l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~ 410 (458)
.+.|...+++.+.++++.+|...++.....++.+.+++.+.+.+...+.
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999998865543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00058 Score=67.81 Aligned_cols=139 Identities=10% Similarity=-0.057 Sum_probs=87.2
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRM-GIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~-~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
+.+.....+..++.+|+.++ +.+|.++ ++.+ ..+.++.+++.++....
T Consensus 36 g~~~~~~~~~~~~~~~~~g~----l~Dr~g~-------r~~~~~~~~~~~~~~~~~~~~~-------------------- 84 (375)
T TIGR00899 36 GLFYTGSAIVGIAVSQLLAT----RSDYQGD-------RKGLILFCCLLAALACLLFAWN-------------------- 84 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhccCC-------chHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 33444555555667777666 4455332 2343 34455555554444432
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHH--HHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCC
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLC--SALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~--~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~ 420 (458)
.+++.+++...+.+.+.....|...+++.+..|++.|+.. .+......++|..+|+.+.+.+.+.
T Consensus 85 -~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~------------ 151 (375)
T TIGR00899 85 -RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG------------ 151 (375)
T ss_pred -chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh------------
Confidence 2555566666777777777888888888888888777644 6777788889999999888876421
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 421 ~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.+++..|.+.+++.++..+..++..+
T Consensus 152 ----~~~~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 152 ----FGFTVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12356677777766666655554433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.4e-05 Score=79.68 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHH-HHHHHHHHHHhHhhhhcccc------ccch
Q 012668 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFY-FSINIGALISSSLIVWIQDN------AGWG 103 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~-~~~niG~~igp~l~g~l~~~------~gw~ 103 (458)
...+++..++.|++.+...+.....+.|++|+++ |++++++++ ....+|..+||+++|++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 4566778899999999999999999999999876 999999997 56789999999999999987 4699
Q ss_pred hhhHHHHHHHHHHHHHHHhcCc
Q 012668 104 LGFGIPALFMGFAIASFFSGTS 125 (458)
Q Consensus 104 ~~F~i~~i~~~l~~ii~~~~~~ 125 (458)
+.|++.++..+++.+.+++..+
T Consensus 382 ~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999888766666655444333
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00049 Score=71.05 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh--h
Q 012668 302 LQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA--M 379 (458)
Q Consensus 302 ~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~--~ 379 (458)
++.+.+|.++.+++.+++...+ .+.........+..+|.++..+...+++.+..|++ .
T Consensus 76 rr~iliG~il~~lg~lll~~~~--------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~ 135 (493)
T PRK15462 76 RMAVMLGALLMAIGHVVLGASE--------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR 135 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc
Confidence 3567888888888876554321 11222444556677888888888889999999875 7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012668 380 RSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 380 ~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
|+...++.+...++|+.+++.+.+.+.+. .+++..|.+.++..+++.+.++...|++
T Consensus 136 R~sgf~i~Y~~~nlG~~iap~l~g~L~~~----------------~Gw~~~F~iaaigm~l~li~~~~~~~~l 192 (493)
T PRK15462 136 RDGGFSLMYAAGNVGSIIAPIACGYAQEE----------------YSWAMGFGLAAVGMIAGLVIFLCGNRHF 192 (493)
T ss_pred ccceehHHHHHHHHHHHHHHHHHHHHHhh----------------hChHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999999999999987531 1245667776665555555555444343
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0012 Score=68.81 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=91.5
Q ss_pred ccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 012668 260 TIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQN 339 (458)
Q Consensus 260 ~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
....+.++....+..++++++.+. +.+| .++++.+...-++.++....+.+....
T Consensus 44 ~~~valv~~a~~LP~~Llsl~aG~----laDr-------~drrrili~~~~~~~~~~~~L~~l~~~-------------- 98 (524)
T PF05977_consen 44 PLMVALVQAASTLPILLLSLFAGA----LADR-------FDRRRILILSQLLRALVALLLAVLAFF-------------- 98 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----Hhhc-------ccchHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 344555677777777888888887 4555 334456666666555544444443221
Q ss_pred CCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 340 VSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 340 ~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
...+.|.+++..++.|++..+..|.-++.+-+.+|++.-..+.++.....+++..+||.+++.+..
T Consensus 99 --~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 99 --GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred --CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 124677778888999999999999999999999999999999999999999999999999998754
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00092 Score=70.40 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=86.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
..+++.+.+|.++.++|.++..+.... ....+.+.+.+..++.|+|++...+.....+.+..| +
T Consensus 88 ~G~R~vllig~ll~~iG~ll~ala~~~---------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~ 151 (591)
T PTZ00207 88 LGPRPIFVLSMTVFCLGTLLFALTFQE---------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-S 151 (591)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhcc---------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-h
Confidence 445577889999999998887764210 001267778888999999999999999999999887 6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012668 379 MRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
.||.++|++....++|..+.+.+...+.. .+...+|.+++++.++..++.+.+.+..
T Consensus 152 ~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----------------~~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 152 NRGAVVAIMKTFTGLGSAILGSIQLAFFS-----------------DNTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 78999999999999999864444443321 1134556777777777666655544433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00025 Score=73.88 Aligned_cols=132 Identities=11% Similarity=0.109 Sum_probs=96.0
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+..+.+..+..++..++.++ +.+|++ +++.+.++.++.+++.+...+.
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~----l~Dr~G-------rr~~~~~~~~~~~i~~~~~~~~--------------------- 177 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGY----LSDRFG-------RKKVLLLSTLVTAVSGVLTAFS--------------------- 177 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHH----hhhhcc-------chHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 33445555555566666666 455543 2355677777777776666553
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+++.+++..++.|++.+...+....++.+..|++.|+...++......+|..+++.+...+. +
T Consensus 178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~------- 241 (505)
T TIGR00898 178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------D------- 241 (505)
T ss_pred ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------H-------
Confidence 267778889999999999999999999999999999999999999999999998888776543 1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLYV 446 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~ 446 (458)
+...|.+.++.+++..+..+
T Consensus 242 ---wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 242 ---WRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH
Confidence 35566776666665555443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00059 Score=70.27 Aligned_cols=135 Identities=16% Similarity=0.058 Sum_probs=90.2
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++.........+.+|+..+ +.+|++ +++.+..+.++.+++.++....+
T Consensus 58 ~~~s~~~~~~~~~~~~~G~----l~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~--------------------- 105 (455)
T TIGR00892 58 WISSIMLAVLYAGGPISSI----LVNRFG-------CRPVVIAGGLLASLGMILASFSS--------------------- 105 (455)
T ss_pred HHHHHHHHHHHHhhHHHHH----HHHHcC-------chHHHHhhHHHHHHHHHHHHHhh---------------------
Confidence 3333444444556666665 555543 33566777777777777665532
Q ss_pred hhHHHHHH-HHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 345 SIFWQIPQ-YFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 345 s~~~li~~-~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
+.+.++.. .++.|++.+...++....+.+..| +.|+..+|+++....+|..+++.+.+.+.+..
T Consensus 106 ~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-------------- 170 (455)
T TIGR00892 106 NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-------------- 170 (455)
T ss_pred hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--------------
Confidence 44444433 467899988877777777777775 78999999999999999999999888765321
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHh
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~ 448 (458)
++...|.+.++++++..+..+++
T Consensus 171 --gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 171 --GWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHHh
Confidence 24677888887776665544433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.009 Score=58.23 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=58.8
Q ss_pred CCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhh
Q 012668 27 TPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGF 106 (458)
Q Consensus 27 ~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F 106 (458)
.+-+...+.+-+.+.|+|.|+ .|...++-.+..|... |..-.=.. .-..+|.++.-.+.=.+..++||||..
T Consensus 162 ~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l 233 (528)
T KOG0253|consen 162 ASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLL 233 (528)
T ss_pred CCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344777888889999999999 8999998888887765 54433333 566678888877776667788999955
Q ss_pred HHHH-HHHHHHH
Q 012668 107 GIPA-LFMGFAI 117 (458)
Q Consensus 107 ~i~~-i~~~l~~ 117 (458)
.... ++++.+.
T Consensus 234 ~~~~~pl~~~a~ 245 (528)
T KOG0253|consen 234 FTSSTPLMFAAR 245 (528)
T ss_pred HHHHhHHHHHHH
Confidence 4444 4444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0015 Score=67.72 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHH
Q 012668 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSL 382 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~ 382 (458)
+.+.++.++.+++.++..... +.+.+++..++.|++++... ....++.+..|++.||.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~---------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~ 159 (476)
T PLN00028 102 YGSAFLLMLTAPAVFCMSLVS---------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGT 159 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeH
Confidence 556677777777766655532 55566677888999988654 45667889999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 012668 383 CSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 383 ~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~ 448 (458)
.+|+++...++|..+++.+...+.......+. .+..++...|.+.++++++..++.+++
T Consensus 160 a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~-------~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 160 ANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA-------PSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------cchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888887766554322110000 001134677888888777666555544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0025 Score=65.33 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=84.0
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
.+.....+...+.+++..+ +.+|+ .+++.+.+|.++.+++.++...... ..
T Consensus 65 l~~~~~~~g~~i~~~~~g~----l~dr~-------G~r~~l~~g~~~~~~~~~l~~~~~~------------------a~ 115 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGI----LMKKL-------SYKAGIITGLFLYALGAALFWPAAE------------------IM 115 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHHHh------------------cC
Confidence 3344444555566666655 55553 4447788899988888876532110 13
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+++.+++..+++|+|.+...+..+.++.+..|++.++..+++.+....+|..+++.++..+.
T Consensus 116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778889999999999999999999999888887777899999999999999998877543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00092 Score=76.91 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+++.+++..++.|++.++..|...+++.+..|++.|+.++|+.....++|..+|+.+++.+..
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999999999999999999999999999999999988754
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0018 Score=66.62 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=105.5
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-CC--
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRM-GIGLFLSVLCMSAAAVVEINRLRLARELELV-DQ-- 338 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~-~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~-- 338 (458)
.+.+..+.++..++.+|+.+++.++...|+++ ++.+ ..|.+..++++.++....... .++ +.
T Consensus 41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GR-------Rrp~il~g~~~~~~~l~ll~~~~~~~-------~~~~~~~~ 106 (477)
T TIGR01301 41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGR-------RRPFIAAGAALVAFAVILIGFAADIG-------HLFGDNLD 106 (477)
T ss_pred HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCC-------hHHHHHHHHHHHHHHHHHHHhCchhh-------hhcccccc
Confidence 34456677778888888888876655444432 2333 445666777767666532110 000 00
Q ss_pred CCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhH--HHHHHHHHHHHHHHHHHhhHHhhhhhhh--h---cc
Q 012668 339 NVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMR--SLCSALSLLTTALGNYLSSFILTVVTYF--T---TA 411 (458)
Q Consensus 339 ~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~--g~~~g~~~~~~~ig~~ig~~l~~~~~~~--~---~~ 411 (458)
+.......+..++...+..++.....++.-+++.|..|++.| +.+.+......++|+.+|+.+++..... . .+
T Consensus 107 ~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~ 186 (477)
T TIGR01301 107 KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKT 186 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccc
Confidence 001112234556667777888888889999999999999866 6789999999999999999998864211 0 00
Q ss_pred CCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012668 412 GGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
+.+ +.. ..++...|.+.+++.++..++-.+..|..
T Consensus 187 ~~~-~~~-----~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 187 EAC-GVS-----CANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred ccc-ccc-----cchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 000 001 12466778777777777666666555544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.002 Score=65.90 Aligned_cols=89 Identities=11% Similarity=-0.001 Sum_probs=66.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
+.+++.+.++.++.++..+..++... +...+++.+++..++.|++ +...+.....+.+..|++
T Consensus 97 ~G~R~v~~~~~ll~~i~~~~~~~a~~----------------~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~ 159 (462)
T PRK15034 97 FGGRRWTVFSTAILIIPCVWLGIAVQ----------------NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA 159 (462)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHc----------------ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh
Confidence 34446778888888888777765310 0113777888889999998 668899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhh
Q 012668 379 MRSLCSALSLLTTALGNYLSSFILTV 404 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~ 404 (458)
.||++.|++....++|..++..+...
T Consensus 160 ~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 160 KQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999966666666655555543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0038 Score=63.48 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=75.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
.++++.+.++.+..++..++.++.. +.+.+.+..++.|++|+... ....++++..|++
T Consensus 89 lG~K~vL~l~~l~Wsl~t~L~~fa~---------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k 146 (511)
T TIGR00806 89 LRYKPVLVLQALSFVCVWLLLLLGT---------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS 146 (511)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH
Confidence 3444677888888877777777753 77889999999999999999 9999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 012668 379 MRSLCSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
.|++++|+++....+|.++++.+++.+
T Consensus 147 ER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 147 RYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999984
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0029 Score=65.32 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=94.0
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
..+...+...+.+++..+ +.+|+ .+++.+.++.++.+++.+.....+.-. .+...+....
T Consensus 60 ~~s~~~ig~~~~~~~~G~----l~dr~-------Grr~~~~~~~~l~~i~~~~~~~~~~~~---------~~~~~~~~~~ 119 (479)
T PRK10077 60 CVASALIGCIIGGALGGY----CSNRF-------GRRDSLKIAAVLFFISALGSAWPEFGF---------TSIGPDNTGY 119 (479)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHh-------ccHHHHHHHHHHHHHHHHHHHhhcccc---------ccccccchhH
Confidence 333444444555566665 55553 333667777777777766555421000 0000000123
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
++.+++..+++|++.+...|...+++.+..|++.||.+++++.....+|..+++.+...+..... ..+ .+..
T Consensus 120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~~----~~~~ 191 (479)
T PRK10077 120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGD----ASW----LNTD 191 (479)
T ss_pred HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCc----ccc----cccC
Confidence 45567788999999999999999999999999999999999999999999888776654432110 001 1112
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 012668 426 HLDYFFWLLAGLSIFNMLLY 445 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~ 445 (458)
++.+.|.+.++.+++..+..
T Consensus 192 gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 192 GWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 34566776666665554433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0065 Score=63.22 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHH
Q 012668 305 MGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCS 384 (458)
Q Consensus 305 ~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~ 384 (458)
+.++.++.+++....++.+. ..+.+++.+..++.+++.....+...+++.+..|++.||...
T Consensus 84 ll~~~i~~~~~~~~~a~~~~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~ 145 (491)
T PRK11010 84 LLATQLLLLVAIAAMGFLEP------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGA 145 (491)
T ss_pred HHHHHHHHHHHHHHHHHcCC------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHH
Confidence 55666666666666555321 135677777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 012668 385 ALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 385 g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~ 447 (458)
++......+|..+++.+...+.+. ..+....|.+.++++++..+..++
T Consensus 146 ~i~~~g~~lG~llg~~l~~~l~~~---------------~~GWr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 146 AISVLGYRLAMLVSGGLALWLADR---------------YLGWQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---------------ccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998888766420 012466777777776666554443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.002 Score=66.56 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
|.+.++...++.|+.|....|....++..-..++.||..+|+|+....+|+++|+.+..-+.+.......
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~---------- 202 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL---------- 202 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc----------
Confidence 6777888899999999999999999999999999999999999999999999999998876432211111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh
Q 012668 425 GHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
.++.+.|.+-++++++..++.+++.
T Consensus 203 ~gW~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 203 AGWRWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred CCceeehhHHHHHHHHHHheEEEEe
Confidence 3357889999999988887655443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0014 Score=68.20 Aligned_cols=110 Identities=11% Similarity=0.131 Sum_probs=79.9
Q ss_pred HHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHH
Q 012668 277 WVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLL 356 (458)
Q Consensus 277 ~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~ 356 (458)
..++...+.-++.+|+ .+++.+.++.++.+++.++.++.+.+.. -| .+.+..++...+++
T Consensus 69 ~~~ig~~~~G~l~Dr~-------Grr~~l~~~~~l~~i~~~~~a~~~~~~~-----~g--------~~a~~~l~~~R~l~ 128 (490)
T PRK10642 69 IRPLGGLFFGMLGDKY-------GRQKILAITIVIMSISTFCIGLIPSYAT-----IG--------IWAPILLLLCKMAQ 128 (490)
T ss_pred HHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHhcccHHH-----HH--------HHHHHHHHHHHHHH
Confidence 3344444444466664 4447788899999888888777532100 00 01122467788999
Q ss_pred hHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 357 GAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 357 g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
|+|.+...+...+++.+..|++.||.+++++.....+|..+|+.+...+.
T Consensus 129 G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~ 178 (490)
T PRK10642 129 GFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIS 178 (490)
T ss_pred HhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888888887765543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0029 Score=62.57 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHH
Q 012668 305 MGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCS 384 (458)
Q Consensus 305 ~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~ 384 (458)
+..+.++.+++...+.+... ..+.+++....++.+++.....+...+++.+..|++.|+...
T Consensus 60 l~~~~~~~~~~~~~l~~~~~------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~ 121 (356)
T TIGR00901 60 LVLTQVLLLSLLLILSFLVP------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGS 121 (356)
T ss_pred HHHHHHHHHHHHHHHHcCCc------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHH
Confidence 35666666666555544321 125555666677788888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 012668 385 ALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYV 446 (458)
Q Consensus 385 g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~ 446 (458)
++.....++|..+++.+...+...... ++.+.......|.+.+++.++..+..+
T Consensus 122 ~~~~~~~~~G~~~~~~l~~~l~~~~g~--------~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 122 TIYIVGYRAGMLLSGSLALVLASPEFA--------NTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc--------ccccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998776532210 001111245667776666555444433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.002 Score=64.21 Aligned_cols=61 Identities=13% Similarity=-0.036 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc
Q 012668 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD 98 (458)
Q Consensus 32 ~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~ 98 (458)
...+.|..+.+.++-.+.-..+.+-+-||+++| |..+..+=.++..+|.++|.++.+.+..
T Consensus 141 ~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 141 PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred hhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence 466788899999999888888889999999987 9999999999988999988888877754
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00062 Score=78.33 Aligned_cols=63 Identities=17% Similarity=0.049 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+++++++..+++|+++++..|...+.+.+..|++.++.++|+.....++|.++|+.+++.+..
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888999999999999999999999999999999999999999999999999999998763
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0017 Score=67.77 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=81.5
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012668 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
.....+..++..++..+ +.+|+ .+++.+.++.++..++.++....... ....+.
T Consensus 62 ~~~~~ig~~ig~~~~g~----l~d~~-------Grr~~~~~~~~~~~v~~~~~~~~~~~---------------~~~~~~ 115 (502)
T TIGR00887 62 NGSASIGTLAGQLFFGW----LADKL-------GRKRVYGMELIIMIIATVASGLSPGS---------------SPKSVM 115 (502)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhh-------ccHHHHHHHHHHHHHHHHHHHHccCc---------------ccchHH
Confidence 33333334444555554 55553 33356677777777776665543100 001135
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+++..++.|++++...+....++.+..|++.||..+++.+....+|..+++.+...+.
T Consensus 116 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 116 ATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999999998877654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00051 Score=72.86 Aligned_cols=152 Identities=17% Similarity=0.176 Sum_probs=109.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-----hhhc--------------cc-C-CC------CCccchhH
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEIN----RLRLA-----RELE--------------LV-D-QN------VSVPISIF 347 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~----~~~~~-----~~~~--------------~~-~-~~------~~~~~s~~ 347 (458)
.++.+.+++|.+++++|.++..+.+.. .++.. .++. .. . +. .++...+.
T Consensus 159 ~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (735)
T KOG3626|consen 159 GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFL 238 (735)
T ss_pred cCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHH
Confidence 455577899999999999988875332 11110 0000 00 0 00 11112233
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc---------cCCCcCCC
Q 012668 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTT---------AGGKTGWI 418 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~---------~~~~~~~~ 418 (458)
.+++++++.|+|+..+.+.+.+++.|.+-++.-.++.|+.+.+..+|-++|..+++++.+..- ++.|..|+
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI 318 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI 318 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh
Confidence 566789999999999999999999999999999999999999999999999999998866422 12233443
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 012668 419 PDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 456 (458)
Q Consensus 419 ~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~~ 456 (458)
+.++.-|.+.+.+.++..+.++++-|.+++++
T Consensus 319 ------GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 319 ------GAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 33455588899999999999999888887644
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0023 Score=63.34 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=79.3
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
++...++.+...+..++.++ +.+|++ +++.+.++.++..++.+.. ..
T Consensus 38 g~~~s~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~-~~--------------------- 84 (355)
T TIGR00896 38 GLLTALPVLCFAVLAPLAPW----LARRFG-------EERSVAAGLLLIAAGILIR-SA--------------------- 84 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHH----HHHHhC-------chHHHHHHHHHHHHHHHHH-Hh---------------------
Confidence 44455566666677777777 455533 3355677777766665544 21
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+.+.+++..++.++|.+...+.....+.+..| +.|+..+++++...++|..+++.+.+.+.
T Consensus 85 ~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 85 PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 255666778899999999988888888888776 58999999999999999999988877664
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00057 Score=69.50 Aligned_cols=64 Identities=5% Similarity=0.014 Sum_probs=53.3
Q ss_pred chhHHHHH-HHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 344 ISIFWQIP-QYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 344 ~s~~~li~-~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
++++.+.+ ..++.|.+.-+++....+.-+++.-+..+|.++|++.+...++..+|+.+...+..
T Consensus 385 v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 385 VPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred cChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence 34443344 35788888888899999999999999999999999999999999999988887653
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.42 E-value=2.6e-05 Score=81.58 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=3.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--h-h-------hccc-------------C--C--CCCccchhHHH
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRL--A--R-E-------LELV-------------D--Q--NVSVPISIFWQ 349 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~--~--~-~-------~~~~-------------~--~--~~~~~~s~~~l 349 (458)
.++.+.+++|.+++++|.+++.+.+.....+ . . . ..+- + + +......++.+
T Consensus 65 ~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 144 (539)
T PF03137_consen 65 GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVF 144 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHH
Confidence 4556778999999999999987654332111 0 0 0 0000 0 0 11112234667
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc------------cCCCcCC
Q 012668 350 IPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTT------------AGGKTGW 417 (458)
Q Consensus 350 i~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~------------~~~~~~~ 417 (458)
++++++.|+|..-..+.+.+|+.|.++++.-+.+.|+.+....+|.++|..+++.+.+..- +++|..|
T Consensus 145 ~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~W 224 (539)
T PF03137_consen 145 ILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRW 224 (539)
T ss_dssp -------SSS----------------------------------------------------------------------
T ss_pred HHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccH
Confidence 7899999999999999999999999999999999999999999999999999987765311 1223345
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012668 418 IPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 418 ~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
+ +.++.-|.+.+++.++..+.++.+-|++++.
T Consensus 225 v------GAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 225 V------GAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp --------------------------------------
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 4 2334457788888888888888877777654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0016 Score=66.53 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=79.5
Q ss_pred HHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHH
Q 012668 276 FWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFL 355 (458)
Q Consensus 276 ~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 355 (458)
+..|+...+.-++.+|+ .+++.+.++.++.+++.+...+.+.+. ..+ ..+...+++..++
T Consensus 74 ~~~~ig~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~~l~~~R~l 133 (432)
T PRK10406 74 LMRPIGGWLFGRIADKH-------GRKKSMLISVCMMCFGSLVIACLPGYE-----TIG--------TWAPALLLLARLF 133 (432)
T ss_pred HHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHHHHHHhhcCCch-----hHH--------HHHHHHHHHHHHH
Confidence 33345555445566664 344677888888888877766532100 000 0134567788999
Q ss_pred HhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 356 LGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 356 ~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+|+|++...|...+++.+..|++.||.+.++.......|..+++.+...+.
T Consensus 134 ~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 134 QGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred HHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888888877655544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0074 Score=60.92 Aligned_cols=109 Identities=14% Similarity=-0.016 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHH
Q 012668 304 RMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLC 383 (458)
Q Consensus 304 ~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~ 383 (458)
.+.++.++.++++..+.+.+. ..+.+.+.+..++.++......|...+++.+..|++.|+.+
T Consensus 70 ~l~~~~~~~~l~~~~l~~~~~------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~ 131 (402)
T PRK11902 70 WLLLTQVGLAASIAAMAFCPP------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAG 131 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHH
Confidence 356666777666666554311 12566666677778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 012668 384 SALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLY 445 (458)
Q Consensus 384 ~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~ 445 (458)
.++......+|..+++.+...+.+. + .+....|.+.+++.++..+..
T Consensus 132 ~~~~~~g~~~g~i~g~~l~~~l~~~--------~-------~gw~~~f~i~a~~~l~~~l~~ 178 (402)
T PRK11902 132 AAVKVLGYRLAMLVSGGLALWLADR--------V-------LGWGNTYLLMAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhc--------c-------cCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887766421 0 123566777777666555443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.003 Score=64.86 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=93.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
+..++.+..+.++.+++-++...... .+.+.+++..+++|++++...|.......+-+|++
T Consensus 100 ~G~r~v~~~~~~~sa~~t~l~P~aa~-------------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~ 160 (466)
T KOG2532|consen 100 FGARRVFFISGLISALLTLLTPLAAS-------------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN 160 (466)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHH-------------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH
Confidence 34447788888888888888777652 35567788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 379 MRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.|++..++......+|.+++-.+.+.+-+. +-+| ...|-+.++++++..++.+.+.+
T Consensus 161 Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-----~~GW----------~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 161 ERSTFIAILTAGSQLGTIITMPVSGLLCES-----SLGW----------PSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-----CCCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999888877532 1234 45567777777777766655544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.002 Score=65.62 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=90.9
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012668 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
..+..+.-.+..|+.+.+.++.-.|.++| +..+..+.++.+++.+++...... ......
T Consensus 41 ~~~~~i~~~i~~p~~G~lsDr~~~r~Grr------r~~i~~~~~~~~i~~~~~~~~~~~---------------~~~~~~ 99 (437)
T TIGR00792 41 FLVARILDAITDPIMGNIVDRTRTRWGKF------RPWLLIGAIPFSIVLVLLFTTPDF---------------SATGKL 99 (437)
T ss_pred HHHHHHHHHhccchheEeeecCCCCCCCc------chhHHHhHHHHHHHHHHHHhCCCC---------------CcchHH
Confidence 33344444555566666444432222211 223566777777766665442100 001235
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhccc-chhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQS-PDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~a-P~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
+|.+..+++.+++..+..++..++..+.. |++.|+...+..+....+|..+++.+...+......+ .+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~---------~~~~ 170 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGG---------DDKF 170 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------cccc
Confidence 66777888889999998888888888877 5788999999999998998888777665544221100 0112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 426 HLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
++...+.+.++++++..++.++..+
T Consensus 171 g~~~~~~i~~~l~~~~~~~~~~~~~ 195 (437)
T TIGR00792 171 GWFMFALVLALIGVVSLIICFFGTK 195 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 3455566666666666555444333
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.058 Score=54.94 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=90.5
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CC-CCCc
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELV--DQ-NVSV 342 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~--~~-~~~~ 342 (458)
+..++.+.+-+..-+.+-....+-+|. ++ +.....+.+|.++.-+++++...-. +++..+- ++ +...
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~ri-r~---fg~~~~~~~~~~~~~~~~~li~l~~------p~dap~~~t~~~~~~~ 349 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRI-RG---FGRKPTVLIGIIIHLIGFLLIHLSF------PNDAPLRPTDSPPLLF 349 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhh-hh---cccCcchhHHHHHHHHHHHHHhccc------cccCCCCCCccccccc
Confidence 444555555554444333333333332 22 5555667777777666655544321 1111110 11 1112
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
..+.....+..++.|++..+.....+..+.... ++.|..+..++-+-.++++.++........
T Consensus 350 ~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~---------------- 412 (461)
T KOG3098|consen 350 TPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLL---------------- 412 (461)
T ss_pred ccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhH----------------
Confidence 223445566789999999999999999999999 567778888888888888876655444221
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012668 423 NKGHLDYFFWLLAGLSIFNMLLYVVCAKKYK 453 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~ 453 (458)
.....+...+++.+...+++...++.+
T Consensus 413 ----l~~~~l~~~i~~~i~~~~~~~~~~~~~ 439 (461)
T KOG3098|consen 413 ----LYIYTLGLPIFCVIATTIFFIVAERTQ 439 (461)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234555666666666666655553
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0031 Score=64.62 Aligned_cols=112 Identities=8% Similarity=0.116 Sum_probs=81.8
Q ss_pred HHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHH
Q 012668 275 IFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYF 354 (458)
Q Consensus 275 i~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 354 (458)
.+..|+...+.-++.+|+ .+++.+.++.++.+++.++.++.+.... .+ ..+++.++...+
T Consensus 74 ~~~~~~g~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~~l~~~R~ 133 (438)
T PRK09952 74 FLFRPLGGVVFGHFGDRL-------GRKRMLMLTVWMMGIATALIGLLPSFST-----IG--------WWAPVLLVTLRA 133 (438)
T ss_pred HHHHhhHHHHHHHHHHhh-------ccHHHHHHHHHHHHHHHHHHhcCCcHHH-----HH--------HHHHHHHHHHHH
Confidence 345566666666677774 4446778888888888777766431100 00 011224667789
Q ss_pred HHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 355 LLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 355 l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
++|++++...|....++.+..|++.||..++.......+|..++..+...+.
T Consensus 134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988877766554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0021 Score=63.89 Aligned_cols=95 Identities=8% Similarity=0.115 Sum_probs=71.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
..+++.+.++.++.+++..+....+.... ......+.+++..+++|++.+...+....++.+..|++
T Consensus 62 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~ 128 (394)
T TIGR00883 62 IGRKKTLVITLLMMGIGTLLIGLLPSYAT-------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG 128 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCChhh-------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc
Confidence 34446677888888888777665421100 00011234667789999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 379 MRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.|+..++.......+|..+++.+...+.
T Consensus 129 ~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 129 KRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877654
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.023 Score=57.17 Aligned_cols=90 Identities=8% Similarity=-0.026 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhH--HHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMR--SLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~--g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
+.+++.+...+.+.......|...+++.+..|++.| +.+.+..+...++|..+|+.+.+.+.+..
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------------- 170 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------------- 170 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-------------
Confidence 444444444444444456678888888776665533 45678888899999999999999775321
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 423 NKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
++...|.+.++++++..+..++..+
T Consensus 171 ---gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 171 ---SFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 2456677777777666665554444
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.011 Score=60.42 Aligned_cols=108 Identities=6% Similarity=0.046 Sum_probs=76.4
Q ss_pred hhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhH
Q 012668 279 PIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGA 358 (458)
Q Consensus 279 pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ 358 (458)
|+...+.-++.+|+ .+++.+..+.++..++..+.++.+.... . + ......+++..+++|+
T Consensus 70 ~ig~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~l~~~~~~~~~-~----~--------~~~~~~l~~~R~l~G~ 129 (434)
T PRK15075 70 PLGAIVLGAYIDRV-------GRRKGLIVTLSIMASGTLLIAFVPGYAT-I----G--------LAAPLLVLLGRLLQGF 129 (434)
T ss_pred hhHHHHHHHHhhhh-------chHHHHHHHHHHHHHHHHHHHhCCcHHH-H----H--------HHHHHHHHHHHHHhhc
Confidence 44444444566664 4446778888888888777776421100 0 0 0001235677899999
Q ss_pred HHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 359 AEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 359 ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+...+....++.+..|++.||..+++.....++|..+++.++..+.
T Consensus 130 ~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 130 SAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred cccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888888777776653
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.015 Score=62.41 Aligned_cols=253 Identities=9% Similarity=-0.063 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc-chhh----
Q 012668 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG-WGLG---- 105 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g-w~~~---- 105 (458)
.......++.++++.++..++-.++.+++.++.+ .+++.+..++|++..+.+.+. .+++..+..... +...
T Consensus 82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~~ 157 (654)
T TIGR00926 82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGCQ 157 (654)
T ss_pred chHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccC
Confidence 4666778899999999999999999999998876 245567999999999988885 555666654433 3221
Q ss_pred --h-HHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCC
Q 012668 106 --F-GIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSD 182 (458)
Q Consensus 106 --F-~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (458)
| +..++.+++.++.++.+...++..++.+.......++......... +.....
T Consensus 158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~------------------------~~~~~~ 213 (654)
T TIGR00926 158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR------------------------KRFSTR 213 (654)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH------------------------HhhccC
Confidence 2 2455666777777787776665555543332223333221111000 000000
Q ss_pred ccchhhhhhccccccccCCCCCCCcccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcc
Q 012668 183 ELRCLDKAAVVSDAEIKSGDFSNPWILC--TVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFT 260 (458)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 260 (458)
+.+| ...|..+ .....++.+...+++.++...+.+++.+.+.......+..++++..+.+.
T Consensus 214 ~~~~-----------------~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~ 276 (654)
T TIGR00926 214 SEHW-----------------PLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG 276 (654)
T ss_pred Cccc-----------------chhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC
Confidence 0000 0011111 12223567888888999999999999889888888888888887644333
Q ss_pred cCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012668 261 IPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLAR 331 (458)
Q Consensus 261 ~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~ 331 (458)
..+...+.++.+-.++..++...+..++..++.++ ..++.++.-+.+.+.++.+.+........++-+
T Consensus 277 g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~~~ 344 (654)
T TIGR00926 277 GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKVNP 344 (654)
T ss_pred CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445677888888888888888888999887554 567888999999999998888888776655544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00073 Score=68.67 Aligned_cols=86 Identities=16% Similarity=0.041 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhH-HHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNW-FYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~-~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
+.+.+++..++.+++.+...+.....+.+.+|++. |++.++. +....++|..+||.++|++.|..||+..|.+
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~ 387 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI 387 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 56667777888888888888888888889888765 7777766 6778899999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 012668 109 PALFMGFAIASFF 121 (458)
Q Consensus 109 ~~i~~~l~~ii~~ 121 (458)
.++..++..++.+
T Consensus 388 ~~~~~~i~~~~~~ 400 (420)
T PRK09528 388 LGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 7776655554433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.018 Score=60.70 Aligned_cols=136 Identities=16% Similarity=0.220 Sum_probs=90.4
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
..|+...+.+...+..|+.+++++- +.+++.+..|.++..+|.+..+..+
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDl-----------fGRr~~~i~g~~l~vvG~Iv~atA~------------------- 129 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDL-----------FGRRYFFIIGSLLGVVGSIVCATAQ------------------- 129 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHH-----------hcchHHHHHHHHHHHhHHHHhhcCC-------------------
Confidence 4566666666666667777764433 3344778899999999988877542
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012668 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
+...++.+.++.|+|.+.... ....+.+..|.+.|+...++...........++.+...+.. ..+|
T Consensus 130 --~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~------~~~W----- 195 (599)
T PF06609_consen 130 --NMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA------HSGW----- 195 (599)
T ss_pred --cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc------CCCc-----
Confidence 666778899999999777664 45558899999999888777666555555556666554421 1234
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Q 012668 423 NKGHLDYFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~ 447 (458)
.+.|.+..++..++.+..++
T Consensus 196 -----Rw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 196 -----RWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred -----chHHHHHHHHHHHHHHHHHH
Confidence 55666666665555554333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0089 Score=59.89 Aligned_cols=61 Identities=8% Similarity=-0.167 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+.|.+.+...+.+++.....|...+.+.+. ++.|+...+......++|..+|+.+++.+.+
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 566666778888998888888877777765 3456777788888889999999999998753
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0038 Score=62.40 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhH
Q 012668 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMR 380 (458)
Q Consensus 301 ~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~ 380 (458)
+.+.-.-|++++.+-++.++..-.+ .......++..-+.+-+++-.-+.+......+..|.+.|
T Consensus 377 Rk~iq~~GF~~~~i~~~~~~~~y~~----------------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR 440 (538)
T KOG0252|consen 377 RKYIQLMGFFIMTIFFFVIAGPYNQ----------------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVR 440 (538)
T ss_pred hHHHHHhhHHHHHHHHHHHcCCccc----------------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHh
Confidence 3355677888877776666553210 011122233344555566655566777777899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012668 381 SLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 381 g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
|..-|++-...=+|.++|........+. ++ ....+....++++++.++++.+.-+++-
T Consensus 441 ~t~hGIsAA~GK~GAivg~~~F~~~t~~-------~y----p~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 441 STCHGISAASGKAGAIVGAFGFLYLTDH-------NY----PPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred hhhhhHHHHhccchHHHHHHHhhHhhhc-------cC----CccccchHHHHHHHHHHHHhHheeEEee
Confidence 9999999999999999888877755421 11 1113456778898988888887765544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.016 Score=58.13 Aligned_cols=61 Identities=7% Similarity=-0.191 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+.+.+++..++++.+.....|...+++.+ +++.|+...|......++|..+++.+.+.+.+
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~ 153 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG 153 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888888887754 45778999999999999999999999887764
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.014 Score=61.09 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=86.1
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++.....+...+..++..+ +.+++ .+++.+.++.++..+|.++.....
T Consensus 92 s~~~s~~~lga~~g~l~~g~----l~d~~-------GRk~~l~~~~~~~~iG~ii~~~a~-------------------- 140 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGR----LGDRI-------GRKKTLLLAVVLFLIGAIIIALAP-------------------- 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHh-------hhHHHHHHHHHHHHHHHHHHHHhh--------------------
Confidence 45555555555666666666 44443 333677888888888888887753
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILT 403 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~ 403 (458)
++++++++.++.|+|.+........++.+.+|++.||.......+...+|-.++..++.
T Consensus 141 -~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 141 -SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred -hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999999999999999999999999999888844433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.016 Score=57.87 Aligned_cols=125 Identities=12% Similarity=0.053 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh---h
Q 012668 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA---M 379 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~---~ 379 (458)
+-+.+|.++..+|.+++.+.... ...+...+...+.++..+.++|.++.-|...++..|+.+++ .
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~------------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~ 69 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP------------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR 69 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS------------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc------------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence 34678888888898886665311 00011234567888999999999999999999999999987 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012668 380 RSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 380 ~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
+......++...++|..++..+...+++. .++...|.+.++..+++.+.++.-.++++++
T Consensus 70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 70 RDSFFNWFYWGINIGSLFSPTLVPYIQQN----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHC----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhHHHHHHHHhhhhHhhcccchhhccc----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 66677788999999999999888877631 2356778888888888888887766666654
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0032 Score=65.00 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=79.2
Q ss_pred CchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc-chhhh
Q 012668 28 PAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG-WGLGF 106 (458)
Q Consensus 28 ~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g-w~~~F 106 (458)
..+.+.+++.-++.|+..|+..+...++.+++.|+++ .+..|++|...-...+.+||++.|.+.+..| -|+.|
T Consensus 377 ~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~ 450 (477)
T PF11700_consen 377 LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGF 450 (477)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 3466778888889999999999999999999999987 7999999999999999999999999998876 88999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012668 107 GIPALFMGFAIASFFSG 123 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~~~ 123 (458)
....+++++++++++..
T Consensus 451 ~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 451 LFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888788887776443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.045 Score=55.05 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=52.7
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhH
Q 012668 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLD 428 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
..+..++.+++.....|...+++.+..++ ++...|......++|..+|+.+++.+... +..
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-----------------~~~ 162 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILFSI-----------------DPQ 162 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhhcc-----------------Cch
Confidence 44556778888888888888877665443 34566777777889999999888866421 124
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012668 429 YFFWLLAGLSIFNMLLYV 446 (458)
Q Consensus 429 ~~f~~~a~i~~~~~v~~~ 446 (458)
..|.+.++++++..++.+
T Consensus 163 ~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 163 IVFWLGSGFALILMLLLM 180 (396)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567666666666654443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.08 Score=54.60 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP-DAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP-~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
..|+.+.+.+..++.-+...+-.++..+.++ ++.|...++.-.....+|..+++.+...+.
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv 170 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLV 170 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999999999888 888999999999999988888777765443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.12 Score=53.22 Aligned_cols=103 Identities=17% Similarity=0.071 Sum_probs=75.6
Q ss_pred HHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHH
Q 012668 276 FWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFL 355 (458)
Q Consensus 276 ~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 355 (458)
+.+.+...+..++.+|+++| .-+.+..++..++.+.....-.. -+...++++.++
T Consensus 71 iG~~~Gs~~~~~la~~~GRK-------~~l~~~~~l~~~~~~~~~~s~~~------------------~~~e~li~GR~i 125 (485)
T KOG0569|consen 71 IGGMIGSFSSGLLADRFGRK-------NALLLSNLLAVLAALLMGLSKSA------------------PSFEMLILGRLI 125 (485)
T ss_pred HHHHHHHHHHHHHHHhhcch-------HHHHHHHHHHHHHHHHHHHHHHh------------------hhHHHHHHHHHH
Confidence 44455555555677775433 44555555555554444432211 266778889999
Q ss_pred HhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhh
Q 012668 356 LGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILT 403 (458)
Q Consensus 356 ~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~ 403 (458)
.|+..++......-++.+.+|++.||.+..+..+...+|..++..++.
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l 173 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL 173 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998866655
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.12 Score=51.27 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=78.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
.+.++-+..|+.++++|+.+..-.... .++..++.+.++.+.|.++...+.+.++....|++
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa~~------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~ 136 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAASS------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPE 136 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhh------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence 556678899999999998887643322 36667777899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 379 MRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
....=+++....+.+|..++|.+++.+..
T Consensus 137 ~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 137 SAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998754
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.054 Score=53.79 Aligned_cols=154 Identities=11% Similarity=0.045 Sum_probs=96.4
Q ss_pred cccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 012668 259 FTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQ 338 (458)
Q Consensus 259 ~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
+.++++....+.+..++... +.......+.+|+ .+++....++++..+-.+...+...+
T Consensus 44 ~~LS~~q~~ll~aiPil~Ga-llRl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~~------------- 102 (417)
T COG2223 44 FGLSEGQKGLLVAIPILVGA-LLRLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVTY------------- 102 (417)
T ss_pred cCCCHHHHHHHHHHHHHHhH-HHHHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHccC-------------
Confidence 45666666555555544333 2233333356664 44477788888888888888877532
Q ss_pred CCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCC
Q 012668 339 NVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWI 418 (458)
Q Consensus 339 ~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~ 418 (458)
.+.|.++..-++.|++- -.+..++..+.+-.||+.+|.++|++. ..|+|..+...+...+..... +
T Consensus 103 -----~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g------~- 168 (417)
T COG2223 103 -----PSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG------F- 168 (417)
T ss_pred -----CchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh------h-
Confidence 24445555555666554 345778889999999999999999999 888888877777776653221 0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012668 419 PDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYK 453 (458)
Q Consensus 419 ~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~ 453 (458)
+.....-.+.....++..+.+++..+...
T Consensus 169 ------~~w~~~~~i~~~~l~v~~v~~~~~~~d~p 197 (417)
T COG2223 169 ------LAWRNVAGIYVVALAIAAVLAWLGMNDVP 197 (417)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 01233334444555566666666655443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.044 Score=53.47 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=83.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
+...+.+..++++.++|..+=... +.+.++....+.|.|.+..+...-+++-+.-| +
T Consensus 74 ~g~er~l~~~Llli~~G~~iR~~~----------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k 130 (395)
T COG2807 74 FGEERSLFLALLLIAAGILIRSLG----------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-K 130 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcc----------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-c
Confidence 677788888888888876664432 45667788999999999999999999999888 5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 012668 379 MRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~ 448 (458)
..+.++|+|.....++..+++.+...+.+.. .+| .....+-+..++++.++.+..
T Consensus 131 ~~~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW----------~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 131 RVGLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGW----------RGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred chhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccH----------HHHHHHHHHHHHHHHHHHhhh
Confidence 6789999999999999999999888775322 123 333444455666666655554
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.032 Score=58.12 Aligned_cols=134 Identities=12% Similarity=0.100 Sum_probs=101.0
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+|+.++...+..+.+|+... +.+|+ ..+..+++|.+++++|+++..+..
T Consensus 83 ~~~i~sl~~~~~~~~gpl~s~----l~~rf-------g~R~v~i~G~~v~~~g~~lssF~~------------------- 132 (509)
T KOG2504|consen 83 IAWIGSLLLGVYLLAGPLVSA----LCNRF-------GCRTVMIAGGLVAALGLLLSSFAT------------------- 132 (509)
T ss_pred HHHHHHHHHHHHHHhccHHHH----HHhhc-------CchHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 567777777777888888887 66664 444778999999999999998864
Q ss_pred cchhHHHHHH-HHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCC
Q 012668 343 PISIFWQIPQ-YFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDN 421 (458)
Q Consensus 343 ~~s~~~li~~-~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~ 421 (458)
+.|.+++. .++.|+|.+++..+....+. ...++.|++++|+...-.++|..+=+.+...+.+..
T Consensus 133 --~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~------------ 197 (509)
T KOG2504|consen 133 --SLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY------------ 197 (509)
T ss_pred --hHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh------------
Confidence 66666665 58999999999988888887 578899999999999999998887777777664322
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHH
Q 012668 422 LNKGHLDYFFWLLAGLSIFNMLLY 445 (458)
Q Consensus 422 ~~~~~~~~~f~~~a~i~~~~~v~~ 445 (458)
+..+.+++.+.+.+-..+..
T Consensus 198 ----G~r~~~l~~~~~~l~~~~~~ 217 (509)
T KOG2504|consen 198 ----GWRGALLIFGGISLNVLVAG 217 (509)
T ss_pred ----CcHHHHHHHHHHHHHHHHHH
Confidence 23455666666664333333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.033 Score=57.06 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhccc-chhhHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQS-PDAMRSLCSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~a-P~~~~g~~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
..+|..+.+.+.+.+..+...+-.++..+.. +++.|+..++.-.....+|+.+++.+...+
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl 169 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPL 169 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888889988877 557788888888888888888877665443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.82 Score=45.90 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.|.+++..+..|+-.+.+-......+.+..|++.|...+|.....-++|-.+++.++-.+.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56666667788888888999999999999999999999999999999999999988877543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.38 Score=47.96 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHH
Q 012668 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSL 382 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~ 382 (458)
.-+..|.++...+..+......... .+.+ +.+.+...........+.+.|+|......+.++++.|.+|++.|+.
T Consensus 51 PyI~~G~~~~~~g~~~ap~a~~~l~---~~~~--~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~ 125 (403)
T PF03209_consen 51 PYIWGGTLLQAGGLAIAPFALLLLA---ESGQ--QSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPR 125 (403)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc---cccc--ccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhh
Confidence 3456677777776666555432210 0000 0000111112234567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 383 CSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 383 ~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
..++.+.+.-+|.+++..+.+.+.
T Consensus 126 ~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 126 VVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999888654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.23 Score=49.78 Aligned_cols=86 Identities=10% Similarity=-0.015 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
.|+.....+.++......+...++..+..+++.++.+.+.......+|..+|+...+.+.+.. +
T Consensus 98 ~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~----------------g 161 (390)
T TIGR02718 98 GWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF----------------G 161 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------C
Confidence 344445556667777777888888888888888888888888888888888887666554321 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 012668 427 LDYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~ 448 (458)
.+..|.+.+++.++..+..++.
T Consensus 162 w~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 162 QRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3567888887777666655444
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.023 Score=55.65 Aligned_cols=83 Identities=17% Similarity=0.001 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHH
Q 012668 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSL 382 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~ 382 (458)
..+.++.+..++++.+++.-. +...++.+-++.|+..+.++ ..-+++.|.++++.|+.
T Consensus 99 pvll~c~~~va~s~ll~~~S~---------------------~F~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~r~l 156 (451)
T KOG2615|consen 99 PVLLACLIGVALSYLLWALSR---------------------NFAAFVLARFLGGIFKGNLS-VIRAIISDVVSEKYRPL 156 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhhhhccCchH-HHHHHHHhhcChhhccc
Confidence 567788888888877777642 55556666888888887765 45789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 383 CSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 383 ~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
.++......++|.++||.+++.+..
T Consensus 157 ~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 157 GMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred eeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999999876
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.054 Score=55.20 Aligned_cols=125 Identities=17% Similarity=0.241 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc-hhhHHHH
Q 012668 305 MGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP-DAMRSLC 383 (458)
Q Consensus 305 ~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP-~~~~g~~ 383 (458)
+.+|.++.++++.++...... +.+......|+.+.+++..++..+...+..++..+..+ ++.|...
T Consensus 75 ~l~g~i~~~~~~~llf~~~p~-------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l 141 (428)
T PF13347_consen 75 ILIGAILLALSFFLLFSPPPA-------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRL 141 (428)
T ss_pred eehhhHHHHHHHHHhhccccc-------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhH
Confidence 567888888887777653100 00111245677888888899999999999999999998 4689999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012668 384 SALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 384 ~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
.+.-.....+|+.+...+...+... +++.-...++.....+.+++.++..++..+..|.
T Consensus 142 ~~~~~~~~~~g~~l~~~~~~~l~~~---------~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 142 SSWRMIFSMIGSLLASFLAPILVSW---------FGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh---------hccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 9999999999987666666655422 2111111145566666667766666666655555
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.15 Score=52.16 Aligned_cols=155 Identities=15% Similarity=0.075 Sum_probs=87.4
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc-
Q 012668 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI- 344 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 344 (458)
......+.-.++.|+++.+. .++ .+.++.+++|.+++.+|.+++...+.. +.
T Consensus 76 viaa~slg~~i~~liF~~Ws-------~k~---~~~k~Pli~s~ii~~~g~llY~~l~~~-----------------~~~ 128 (488)
T KOG2325|consen 76 VIAASSLGHAIFSLIFGIWS-------NKT---GSVKKPLIVSFLIAIIGNLLYLALAYV-----------------PNG 128 (488)
T ss_pred HHHHHHHHHHhcchhhcccc-------ccc---CCcccCHHHHHHHHHHHHHHHHHHHhc-----------------ccc
Confidence 33444555556666666531 111 233577899999999999999766542 12
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+.+++.+++++.|+|.+... ..=+++.+..-.+.|-++++.....+.+|..+|+.+...+...-+++- .|.++ ..-
T Consensus 129 ~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~--~i~~~-~~~ 204 (488)
T KOG2325|consen 129 VKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGF--MILPG-LIF 204 (488)
T ss_pred hHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCce--EEcCc-ceE
Confidence 66788899999999965443 233455554445555566666666666666666666655543221111 12221 111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012668 425 GHLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
+.++.-=++.+++.++..++..+..+-
T Consensus 205 n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 205 NMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred EecchHHHHHHHHHHHHHHHHHhheee
Confidence 223333345555666666655554443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.3 Score=50.48 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhccc-chhhHHHHHHHHHHHHHHHHHHhhHHhh
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQS-PDAMRSLCSALSLLTTALGNYLSSFILT 403 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~a-P~~~~g~~~g~~~~~~~ig~~ig~~l~~ 403 (458)
...|+.+.+++..++..+..++..++..+.+ +++.|....+.-....++|+.+.+.+..
T Consensus 105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~ 164 (473)
T PRK10429 105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL 164 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888889999999999999999998 6889999888866666777666655444
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.061 Score=52.36 Aligned_cols=62 Identities=11% Similarity=0.061 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
++.++++++++.+.|..+..+..+.++.+..|++.+.+.+++....+++|..+||.+.+.+.
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999775
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.013 Score=59.41 Aligned_cols=117 Identities=12% Similarity=0.023 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhh--H
Q 012668 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAM--R 380 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~--~ 380 (458)
+-+.+|.+++++|.+.++..+ ..+...+.++..++++|.+++-|...+++.++.|++. |
T Consensus 93 ~tI~lGail~~iGh~~L~~~~-------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dprr 153 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISS-------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRR 153 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccc-------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCccc
Confidence 567899999999999887631 0245678889999999999999999999999998754 5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012668 381 SLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 381 g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
....++++...++|+.+++.+.+.+... .+++..|.+.++-..++.+.|++..|+++.
T Consensus 154 D~gFt~fY~~iNiGsl~~p~i~~~~~~~----------------~g~~~gF~~aavGm~~gl~~f~~~~r~~~~ 211 (498)
T COG3104 154 DGGFTLFYMGINIGSLIAPIITGLLAIN----------------YGWHVGFGLAAVGMIIGLVIFLLGRRHVKG 211 (498)
T ss_pred CCCccEEEEEeehHHHHHHHHHHHHHHh----------------hCHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence 5567788888999999999999987631 235677888888888888888877666653
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.32 Score=42.09 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+.++++-++.|+|..+.+...-.++.+...++.+++.++++......+..+|..+.-.+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999998888877666543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.29 Score=51.26 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHH
Q 012668 302 LQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRS 381 (458)
Q Consensus 302 ~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g 381 (458)
+..+.++.++..++-+...+. .+++.+.+..++.|++..........++.+..+++.|+
T Consensus 148 k~~~~~~~~~~~i~~~~~a~a---------------------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~ 206 (521)
T KOG0255|consen 148 KPVLLVSLLLFIIFGILTAFA---------------------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRG 206 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------------------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhh
Confidence 356677777766666555554 37888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 012668 382 LCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLL 444 (458)
Q Consensus 382 ~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~ 444 (458)
.+..+ ......++.+++...+.+.. +| .+.+++.++.+.+..+.
T Consensus 207 ~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 207 LALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHHHHHHH
Confidence 99999 77777777777777776642 23 56667766666655555
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.035 Score=56.06 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=62.9
Q ss_pred HHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHH-HHHHHHHhHhhhhccccccchh------hhHH
Q 012668 36 FGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSI-NIGALISSSLIVWIQDNAGWGL------GFGI 108 (458)
Q Consensus 36 ~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~-niG~~igp~l~g~l~~~~gw~~------~F~i 108 (458)
.+.++-|+..|.+.+.....+.+..|+|. |.++.+++.... .+|..+|..++|++.|++|-+. .|.+
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v 379 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLV 379 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 34456899999999999999999999987 999999998865 5999999999999999887554 4444
Q ss_pred HHHHHHHHHHHHHh
Q 012668 109 PALFMGFAIASFFS 122 (458)
Q Consensus 109 ~~i~~~l~~ii~~~ 122 (458)
++...++..+++.+
T Consensus 380 ~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 380 FAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHHHHHHHh
Confidence 55444444444433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.056 Score=50.97 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc---chhhhHHHH
Q 012668 34 FFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG---WGLGFGIPA 110 (458)
Q Consensus 34 ~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g---w~~~F~i~~ 110 (458)
-|.++.++|+...+..-..-.+++...|+|+ .+++++..+...|+|-.+-|+++|++.++-| |--+|.+..
T Consensus 355 Py~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 355 PYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 3788999999998877777888888889887 9999999999999999999999999988644 444566554
Q ss_pred HHHHH
Q 012668 111 LFMGF 115 (458)
Q Consensus 111 i~~~l 115 (458)
..+.+
T Consensus 429 ~~~aL 433 (459)
T KOG4686|consen 429 GLMAL 433 (459)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.63 E-value=4.4 Score=41.27 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
.+...++.+.++-=+|.=..--...-++.+..|++.||...|+=+..+++...+...++-.+
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46666666777777888888889999999999999999999999999999998887776544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.079 Score=54.27 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChh-hhhhccchhhHHHHHHHHHHHHHhHhhhhccccccc
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSN-ERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGW 102 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~-~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw 102 (458)
+.+.+++..++.++|.+...+...++..|..|++|.+ .+++++..++.+.+...+|..+|+.+.|++.+..||
T Consensus 318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566677788999999999999999999998765421 112358888999999999999999999987665555
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.4 Score=41.43 Aligned_cols=91 Identities=14% Similarity=0.079 Sum_probs=66.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
..+...+.+|.++..+|+........++ ....+.|.+.+...+.+.|....+........+.-|+
T Consensus 63 ~gp~~~l~iG~~~~~~GY~~~~l~~~~~--------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~- 127 (250)
T PF06813_consen 63 FGPWVVLLIGAVLGFVGYGLLWLAVSGR--------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR- 127 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCc--------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-
Confidence 4555667888888888887776543211 1113566677777888888888888888888888985
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhh
Q 012668 379 MRSLCSALSLLTTALGNYLSSFILTV 404 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~ 404 (458)
.||.+.|+.-...++++.+=..+...
T Consensus 128 ~RG~vvgilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 128 SRGTVVGILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred ccCceehhhhHHHHhHHHHHHHHHHH
Confidence 79999999999999988765554443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.9 Score=44.22 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=54.7
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP-DAMRSLCSALSLLTTALGNYLSSFILTVVTYFT 409 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP-~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~ 409 (458)
.+..+..+.|.+.+++.-+++.+-.++.....+ ++.|....+......++|+.+...+...+....
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~ 176 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLF 176 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788889999999999999988888877664 577888999999999999888888877666443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=93.14 E-value=6.9 Score=40.37 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=35.8
Q ss_pred cchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc
Q 012668 51 CVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ 97 (458)
Q Consensus 51 ~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~ 97 (458)
.--++..|.+..+| -.|.+++++.+.|+|..+|+.+..++.
T Consensus 149 lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889998877 788999999999999999999998876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.1 Score=45.83 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhccc---chhh
Q 012668 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQS---PDAM 379 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~a---P~~~ 379 (458)
.-+.+|.++.+++.+.+...... ..+........++..+|..+.....-+.+.+.+ |++
T Consensus 60 ~Y~~i~~~~~~~~~~~~~~~~~~-----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~- 121 (433)
T PF03092_consen 60 PYMIIGWLLGAVSALVLALLPAS-----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES- 121 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-
Confidence 33566666665555555544211 123444555667778887777766666555544 555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 380 RSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 380 ~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+|..++..+..+.+|+.++..+++...+
T Consensus 122 ~g~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 122 RGDLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 8899999999999999999999887653
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.14 Score=51.68 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=100.3
Q ss_pred cCcCccccchhhh---HHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 012668 261 IPPASLSSFDVIS---VIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVD 337 (458)
Q Consensus 261 ~~~~~l~~ln~~~---vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
.|+...+.+|... .++.+-++++ +.+++++ +..+..-++++.++-+..+...
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~----lgD~~GR-------K~vYG~~liImIi~t~~~~~s~-------------- 135 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGW----LGDKFGR-------KKVYGKELIIMIICSALSGLSV-------------- 135 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH----HHhhhcc-------hhhhhHHHHHHHHHHHHhccCC--------------
Confidence 5666666666543 3456666666 4444332 2455556666655554322211
Q ss_pred CCCCcc-chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcC
Q 012668 338 QNVSVP-ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTG 416 (458)
Q Consensus 338 ~~~~~~-~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~ 416 (458)
..+.+ --++|+..--+++|+|.+.=-|.+-+...+.+-++.||...+..+.++++|-..|..+...+....+..
T Consensus 136 -~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~---- 210 (538)
T KOG0252|consen 136 -GTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKI---- 210 (538)
T ss_pred -CCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhcc----
Confidence 11222 235777888899999999999999999999999999999999999999999888887777665544311
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 012668 417 WIPDNLNKGHLDYFFWLLAGLSIFNMLLY 445 (458)
Q Consensus 417 ~~~~~~~~~~~~~~f~~~a~i~~~~~v~~ 445 (458)
+++.-....++..|-+.-.++++..+.-
T Consensus 211 -~~~~~~~~~ld~vWRl~~glg~vpa~~~ 238 (538)
T KOG0252|consen 211 -FNGPSTYPHLDGVWRIIFGLGAVPALLV 238 (538)
T ss_pred -CCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 1111122457788877776666655543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=92.37 E-value=14 Score=37.39 Aligned_cols=51 Identities=6% Similarity=0.007 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGN 395 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~ 395 (458)
++|....++++......+..+....-+.+...++.-|...|++.+..-+=.
T Consensus 339 ~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 339 NIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQ 389 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence 788889999999999999999988888888888888888888766554433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.32 Score=50.32 Aligned_cols=70 Identities=11% Similarity=-0.031 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc-----chhhhH
Q 012668 33 VFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG-----WGLGFG 107 (458)
Q Consensus 33 ~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g-----w~~~F~ 107 (458)
......++.+++.+........++.+..|+++ +++.++++....|+|..+++.++|++.++.| ++..+.
T Consensus 353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~ 426 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWL 426 (468)
T ss_pred eeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHH
Confidence 44455677888888888888999999999887 8999999999999999999999999999888 665444
Q ss_pred H
Q 012668 108 I 108 (458)
Q Consensus 108 i 108 (458)
.
T Consensus 427 ~ 427 (468)
T TIGR00788 427 L 427 (468)
T ss_pred H
Confidence 3
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.92 Score=45.85 Aligned_cols=167 Identities=14% Similarity=0.055 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCC
Q 012668 219 KILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERG 298 (458)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~ 298 (458)
+.+++...+.+..-+.|....+..+-+.... ..+.. . .+.++...|+..++.+|+.+..+++.-.|+++|
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk-----~-~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR--- 101 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSL-GVPHK-----W-SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR--- 101 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHc-CCCcc-----c-ccccccccccccceecccccccccccccccccc---
Confidence 3344444444455555665554444443321 11211 1 234566778888899999998888777776543
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC-C-CccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQN-V-SVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP 376 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP 376 (458)
+.-+.++.++.++++++.+........ +.|++ . ..+......++.+.+.-+..-....+.=++..|..-
T Consensus 102 ---RPfI~~~s~~i~~~l~Lig~aaDig~~------lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~ 172 (498)
T KOG0637|consen 102 ---RPFILAGSLLIAVSLFLIGYAADIGLL------LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLAR 172 (498)
T ss_pred ---cchHHHhhHHHHHHHhhhhhHhhhhHH------hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhcc
Confidence 234677888888888877765422111 11221 1 223455556677788888888888888888888887
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHhhHHhhh
Q 012668 377 DAMRSL-CSALSLLTTALGNYLSSFILTV 404 (458)
Q Consensus 377 ~~~~g~-~~g~~~~~~~ig~~ig~~l~~~ 404 (458)
+..+.. +.+.+.++.++||.+|..++..
T Consensus 173 ~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 173 GDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred ChhhhhccchhHHHHHHhcceeeeecccc
Confidence 777777 9999999999999999988763
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.2 Score=44.89 Aligned_cols=49 Identities=10% Similarity=0.136 Sum_probs=28.7
Q ss_pred HHHHhhcchhHHHHHHhhcCCCcCcccCcCccccchhhhHHHHHhhhhhhhhhhh
Q 012668 235 SAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIA 289 (458)
Q Consensus 235 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~ 289 (458)
|..+....+.+..+..+.+ .-..+.+...+.+..++.+|+.+.+.+++.
T Consensus 23 ~gi~~pF~~iWL~~~~GLs------~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg 71 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLS------GTEIGIIFSAGSLFALLAQPVYGFISDKLG 71 (412)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHccccCCC------HHHHHHHHHHHHHHHHHHHHhHHHhcchhh
Confidence 4444444444554433333 224566777888889999999888555543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.14 Score=52.49 Aligned_cols=94 Identities=13% Similarity=0.013 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHH-HHHHHHHhHhhhhccccccchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSI-NIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~-niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
++|+....-++.|+..+.+..++.+.+.+..||+- |.++-++....- .+|--+|.++||.+.+++|=|..|.+
T Consensus 458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~ 531 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI 531 (618)
T ss_pred CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence 66676777799999999999999999999999987 788887765443 47888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceee
Q 012668 109 PALFMGFAIASFFSGTSLYRF 129 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~ 129 (458)
.++.+++.++.+....+..++
T Consensus 532 ~giAcl~~l~~~~~iq~~l~~ 552 (618)
T KOG3762|consen 532 FGIACLVTLALFISIQLLLKR 552 (618)
T ss_pred HHHHHHHHHHHHHHhhhhhcc
Confidence 999888888877766665544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.34 E-value=1.6 Score=44.19 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=75.2
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
..|+..++-++-+.++-...| +.+| +..+.-..+|..+.++|..+=.+-.. +..
T Consensus 81 ~~wlsmIym~v~vp~gf~~mw----~ldk-------~GLR~a~llgt~ln~iGa~Ir~iss~---------------p~v 134 (480)
T KOG2563|consen 81 ADWLSMIYMVVSVPFGFAAMW----ILDK-------FGLRTALLLGTVLNGIGAWIRLISSL---------------PFV 134 (480)
T ss_pred HHHHHHHHHHHHHHHhhHHHH----hhcc-------cchHHHHHHHHHHHHHHHHHhhhccC---------------ccc
Confidence 445555444444444444444 5555 34445667888888888666544211 011
Q ss_pred cchhH--HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012668 343 PISIF--WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 343 ~~s~~--~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+.+.+ ....++.+.+.++.++.-.-.-....--|++.|..+..+-.+.+.+|-++|..+-..+..
T Consensus 135 ~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 135 PPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred cccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 12333 345678888888877775545556666899999999998888888888888777776653
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.32 Score=45.40 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=65.4
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCC-CChhhhhhccchhhHHHH-HHHHHHHHHhHhhhhcccc--ccchh
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDD-TDSNERVKKGSFFNWFYF-SINIGALISSSLIVWIQDN--AGWGL 104 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~-~~~~~~~~R~~~~~~~~~-~~niG~~igp~l~g~l~~~--~gw~~ 104 (458)
.....+++.+.+.|++.+...|...+.+.|.+++ ++ |+...+.... ...+|..++|.+++++... .+||+
T Consensus 92 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (338)
T COG0477 92 VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA 165 (338)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4677778888889999999999999999999987 33 8889999888 6889999999888877654 68999
Q ss_pred hhHHHHHHHH
Q 012668 105 GFGIPALFMG 114 (458)
Q Consensus 105 ~F~i~~i~~~ 114 (458)
.|.+......
T Consensus 166 ~~~~~~~~~~ 175 (338)
T COG0477 166 AFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHH
Confidence 7777665443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=90.81 E-value=17 Score=36.76 Aligned_cols=82 Identities=11% Similarity=0.144 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHH
Q 012668 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSL 382 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~ 382 (458)
..++++.+...+...++.++ .+.+++-+..++.|++... -..-+++++..+|++.--+
T Consensus 72 pviil~~~~~i~t~~lll~~---------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~ 129 (412)
T PF01770_consen 72 PVIILQALSYIITWLLLLFG---------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQK 129 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHH
Confidence 44555655555555555554 2677777777777766644 4777899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 383 CSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 383 ~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+++..-.+.-+|..+|+.+++++.
T Consensus 130 vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 130 VTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888775
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.04 E-value=13 Score=38.33 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
||.++ ..-..-+........++++.|....+.|....|+.+.....+..+++.+++...+. .+
T Consensus 114 ~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~----------------~~ 176 (463)
T KOG2816|consen 114 YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF----------------LG 176 (463)
T ss_pred HHHhh-hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------------cC
Confidence 44444 33334455666788999999999999999999999999999999999999876532 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 427 LDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
+...|.+.+++.++..+...+..+
T Consensus 177 ~a~~f~ia~~~~~~~~~y~~~~l~ 200 (463)
T KOG2816|consen 177 IALVFLIAAASGILSLLYMLLFLP 200 (463)
T ss_pred chHHHHHHHHHHHHHHHHHhhccc
Confidence 455666666666655555444433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=88.64 E-value=29 Score=35.88 Aligned_cols=58 Identities=12% Similarity=-0.030 Sum_probs=45.8
Q ss_pred HHHHHHhH-HHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhh
Q 012668 351 PQYFLLGA-AEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYF 408 (458)
Q Consensus 351 ~~~~l~g~-ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~ 408 (458)
..|+...+ |...++-..++++.+....++..+..++.....++|..+|+.+...+.+.
T Consensus 133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~ 191 (472)
T TIGR00769 133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL 191 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33433333 33344448899999999999999999999999999999999998887643
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.41 E-value=3.5 Score=40.57 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=65.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHH-HHHHHHhHhhhhccccc
Q 012668 22 LCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSIN-IGALISSSLIVWIQDNA 100 (458)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~n-iG~~igp~l~g~l~~~~ 100 (458)
+|-+..+.+...+++++++-|+++.+..+.-++.......+++-+ ++..+.-|+......| +-+.++.+++=++.+..
T Consensus 112 scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~ 190 (354)
T PF05631_consen 112 SCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP-QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF 190 (354)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence 455666778999999999999999999998888776555333211 0113333333332222 33445555555666666
Q ss_pred cc--hhhhHHHHHHHHHHHHHHHhcC
Q 012668 101 GW--GLGFGIPALFMGFAIASFFSGT 124 (458)
Q Consensus 101 gw--~~~F~i~~i~~~l~~ii~~~~~ 124 (458)
+. ...|..+.+...++.++....+
T Consensus 191 ~~g~vaPF~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 191 GFGPVAPFDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcc
Confidence 55 7899999888877777654444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.02 Score=58.57 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHH
Q 012668 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSL 382 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~ 382 (458)
+-+.++.++..++.++..+...+ .+++.+.+..++.|+|.+...+....++.+.+|++.||.
T Consensus 77 ~~~~~~~~~~~i~~~~~~~~~~~------------------~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~ 138 (451)
T PF00083_consen 77 PALIISALLMIIGSILIAFAPSY------------------NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGF 138 (451)
T ss_pred ccccccccccccccccccccccc------------------ccccccccccccccccccccccccccccccccccccccc
Confidence 45566777777776666654210 267778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhh
Q 012668 383 CSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 383 ~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
+..+......+|..++..+...+
T Consensus 139 ~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 139 LSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999988887766544
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.52 E-value=0.65 Score=46.46 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc-cchhhhHHHH
Q 012668 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA-GWGLGFGIPA 110 (458)
Q Consensus 32 ~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~-gw~~~F~i~~ 110 (458)
..+.+.-+++|+..|+..+.+-+..++..|+++ -+++|++|...-..++.+||.+.+.+.+.. +-|..+..-.
T Consensus 342 ~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~ 415 (438)
T COG2270 342 LDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSII 415 (438)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 334455578999999999999999999999987 689999999999999999999999887643 3566676666
Q ss_pred HHHHHHHHHHHh
Q 012668 111 LFMGFAIASFFS 122 (458)
Q Consensus 111 i~~~l~~ii~~~ 122 (458)
+++.+++++++.
T Consensus 416 vll~iGl~~L~~ 427 (438)
T COG2270 416 VLLLIGLLLLLR 427 (438)
T ss_pred HHHHhhHhhEEe
Confidence 666666665443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=84.60 E-value=36 Score=32.05 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=41.9
Q ss_pred hccchhhHHHHHHHHHHHHHhHhhhhc---cc--cccchhhhHHHHHHHHHHHHHHHhcCcceee
Q 012668 70 KKGSFFNWFYFSINIGALISSSLIVWI---QD--NAGWGLGFGIPALFMGFAIASFFSGTSLYRF 129 (458)
Q Consensus 70 ~R~~~~~~~~~~~niG~~igp~l~g~l---~~--~~gw~~~F~i~~i~~~l~~ii~~~~~~~~~~ 129 (458)
+|+....+..|+-|+|+.+.-+.--+- .+ .-.|++++.+.+++.++-++++.+..+++..
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~ 67 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDI 67 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 478888888899999998775432111 11 2359999999988777777777666666543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=82.31 E-value=65 Score=33.50 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=34.5
Q ss_pred hhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc
Q 012668 53 SSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD 98 (458)
Q Consensus 53 ~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~ 98 (458)
-.+..|.+..+| -.|.++++..+.|+|..++..+..++.+
T Consensus 166 W~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678887776 7889999999999999999999888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 458 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 1e-19 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 6e-05 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 440 bits (1133), Expect = e-151
Identities = 99/441 (22%), Positives = 181/441 (41%), Gaps = 30/441 (6%)
Query: 18 CVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNW 77
CVG + F+ GL+LIALG+GGIKP VSSF DQFD ++ + F+
Sbjct: 96 CVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDM 152
Query: 78 FYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPI 137
FYF+IN G+ +S + + N G + FGIP + M A F+ G Y P
Sbjct: 153 FYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDP 212
Query: 138 TRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAE 197
V+ ++ +E + L+ SA I + L A V+
Sbjct: 213 HGFLPVIRSALLTK-VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF 271
Query: 198 IKSGDFS---NPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDT 254
+ +G V+ ++ ++R+ ++A F +++ Q ++ ++ Q +
Sbjct: 272 VGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQA---ND 328
Query: 255 SIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVL 314
+ PA + + + + V+ +P + ++ P + + L++MG G+ ++ L
Sbjct: 329 MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG---VKLTALRKMGAGIAITGL 385
Query: 315 CMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQ 374
+++ + +SIFWQI Y LL EV LEF Y Q
Sbjct: 386 SWIVVGTIQLMM------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQ 433
Query: 375 SPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLL 434
+P AM+ + L+ +GN + + ++ FF+
Sbjct: 434 APKAMKGTIMSFWTLSVTVGNLWVLLA---NVSVKSPTVTEQIVQTGMSVTAFQMFFF-- 488
Query: 435 AGLSIFNMLLYVVCAKKYKQK 455
AG +I +++ + A+ Y+ +
Sbjct: 489 AGFAILAAIVFALYARSYQMQ 509
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 3e-16
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 26 ATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIG 85
A P + F + LI +GTG +KP VS+ +D+ D ++ + F+ F F IN+G
Sbjct: 103 ALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLG 158
Query: 86 ALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSG 123
A I+ ++ Q+ AG+ + F + A+ M + ++ G
Sbjct: 159 AFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 7e-08
Identities = 33/207 (15%), Positives = 73/207 (35%), Gaps = 33/207 (15%)
Query: 216 EELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVI 275
E ++ P++ ++F A+ Q S + + S P + S + + ++
Sbjct: 277 TEHLRVVSYIPLFIAAVLFWAIEEQGSVVLA---TFAAERVDSSWFPVSWFQSLNPLFIM 333
Query: 276 FWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLF---LSVLCMSAAAVVEINRLRLARE 332
+ P + + + S + +GL LS L M+ +
Sbjct: 334 LYTPFFAWLWTAWKK------NQPSSPTKFAVGLMFAGLSFLLMAIPGAL---------- 377
Query: 333 LELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTA 392
S +S W + + L+ E+ L +P A S ++ L+++
Sbjct: 378 -----YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432
Query: 393 LGNYLSSFI------LTVVTYFTTAGG 413
+G+ L++ + + V YF+ G
Sbjct: 433 VGSALNAQLVTLYNAKSEVAYFSYFGL 459
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 1e-08
Identities = 66/442 (14%), Positives = 120/442 (27%), Gaps = 133/442 (30%)
Query: 21 ALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYF 80
AL PA+ V G+ LG+G K V+ D + +V+ F F+
Sbjct: 143 ALL-ELRPAKN-VLIDGV----LGSG--KTWVAL-------DVCLSYKVQCKMDFKIFW- 186
Query: 81 SINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRM 140
+N+ S ++ + L P
Sbjct: 187 -LNLKNCNSPETVLEMLQK--------------------------LLYQIDP-------- 211
Query: 141 CQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKS 200
W + S + + + R ++ CL +V
Sbjct: 212 ---------NWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCL----LVLL----- 251
Query: 201 GDFSNPWIL------CTVTQVEELKILI--RMFPIWATGIVFSAVYAQMSTLFVEQGMVM 252
+ N C KIL+ R + T + +A +S +
Sbjct: 252 -NVQNAKAWNAFNLSC--------KILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTP 300
Query: 253 DTSIGSF----TIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTG-----KERGFSELQ 303
D P L +V++ P II R K +L
Sbjct: 301 DEVKSLLLKYLDCRPQDLPR-EVLTTN---PRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 304 RMGIGLFLSVLCMSAAAVVEINRLR-LARELELVDQNVSVP---ISIFWQIPQYFLLGAA 359
+ I L+VL E R + L + + +P +S+ W
Sbjct: 357 TI-IESSLNVL--------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK------ 401
Query: 360 EVCTFIGQLEFFYDQS---PDAMRSLCSALSLLTTALGNYLSSFIL--TVVTYFTTAGGK 414
+ + + S S S S+ + + L ++V ++
Sbjct: 402 SDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI---P 456
Query: 415 TGWIPDNLNKGHLD-YFFWLLA 435
+ D+L +LD YF+ +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIG 478
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 38/282 (13%), Positives = 80/282 (28%), Gaps = 90/282 (31%)
Query: 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQ 240
D + +++S EI I+ + V L W + +
Sbjct: 39 QDMPK-----SILSKEEIDH-------IIMSKDAVSGTLRLF-----W----TLLSKQEE 77
Query: 241 MSTLFVEQGMVMD-----TSIGSFTIPPASLSSFDVISVI--FW--VPIYDKIIVPIARK 291
M FVE+ + ++ + I + P S+ + I + ++ K V +
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 292 FTGKERGFSELQR--------M-GIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342
+ + EL+ + G G + + A V ++ +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSG--KTWV---ALDVC--------LSYKVQCKM--- 180
Query: 343 PISIFW------QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNY 396
IFW P+ L ++ Q++ + D ++ + + L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLY---QIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 397 LSS-------FILTVVTYFTTAGGKTGWIPDNL-NKGHLDYF 430
L S +L N+ N + F
Sbjct: 238 LKSKPYENCLLVL-----------------LNVQNAKAWNAF 262
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.86 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.85 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.73 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.61 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.53 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.25 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.17 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.54 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.52 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.39 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.31 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.29 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 97.39 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 96.96 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=200.65 Aligned_cols=388 Identities=25% Similarity=0.404 Sum_probs=218.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhcc---chhhHHHHHHHHHHHHHhHhhhhccccccchhhh
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKG---SFFNWFYFSINIGALISSSLIVWIQDNAGWGLGF 106 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~---~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F 106 (458)
+.+.+++++++.|+|.|...|...+++.|++|+++ |+ ..+++++.+.++|..+||.+++++.++.|||+.|
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 67788999999999999999999999999999876 64 4566699999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccch
Q 012668 107 GIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRC 186 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (458)
++.++..+++.+.+++.++..++++|++++..+..+......+++..+.+ ................ .+++.+...+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~ 257 (524)
T 2xut_A 182 GIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAY---ALVNIPTLGI 257 (524)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHH---TGGGTTTTCS
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhh---hhcccchhhh
Confidence 99988777776666555444333223222211111111111111000000 0000000000000000 0000000000
Q ss_pred hhhhhc---cccccccCCCCCCCc-------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCC
Q 012668 187 LDKAAV---VSDAEIKSGDFSNPW-------ILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSI 256 (458)
Q Consensus 187 ~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 256 (458)
...... ...+... ..+| +.++.++.++.|+......++.....++..+.+..+.+..+....+...
T Consensus 258 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (524)
T 2xut_A 258 VAGLCCAMVLVMGFVG----AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ 333 (524)
T ss_dssp SHHHHHHHHHHHHHHH----TGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS
T ss_pred hhhhhhhhhhhhcccc----cchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe
Confidence 000000 0000000 0011 0011112233444444555566666667767776666666554443321
Q ss_pred cCcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012668 257 GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELV 336 (458)
Q Consensus 257 ~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 336 (458)
+ .+.+.+..++.+..++..++.+++..+..+|++++ .++.+++.+|.++.+++++++...+..
T Consensus 334 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~----------- 396 (524)
T 2xut_A 334 --W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLM----------- 396 (524)
T ss_dssp --S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTT-----------
T ss_pred --e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 1 35566777888888899999998766666665333 566777888888888887776543210
Q ss_pred CCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcC
Q 012668 337 DQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTG 416 (458)
Q Consensus 337 ~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~ 416 (458)
.+.+...+.+++++.+++.++|+++..+..++++.+.+|++.||.++|+++....+|+.+|+.+.+.+.+... .+
T Consensus 397 -~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~ 471 (524)
T 2xut_A 397 -MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TE 471 (524)
T ss_dssp -TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HH
T ss_pred -hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cc
Confidence 0001124667788899999999999999999999999999999999999999999999999999997753210 01
Q ss_pred CCCC-CCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012668 417 WIPD-NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 417 ~~~~-~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
|.++ +. +.....|++.+++++++.++++++.++++++
T Consensus 472 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
T 2xut_A 472 QIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARSYQMQ 509 (524)
T ss_dssp HHHHHHS--CHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred ccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2100 00 1112337777888888888777776666543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-20 Score=190.07 Aligned_cols=355 Identities=19% Similarity=0.243 Sum_probs=222.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++++++.|+|.|...|...++++|++|+++ ++|+.++++++.+.++|..+||.+++++.++.|||+.|++
T Consensus 106 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 106 FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 367888999999999999999999999999999876 2478899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeec---CCCCC-chhhHHHHHHH-------------HHHhhccccCCCcchhhhccchhhh
Q 012668 109 PALFMGFAIASFFSGTSLYRFQ---RPGGS-PITRMCQVLVA-------------SFRKWNLEVPNDSTLLYETQDKASA 171 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~---~~~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (458)
.++..+++++.+++..++..++ +|++. ...+..+.... ...... ....+ .
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~~~-~----------- 248 (491)
T 4aps_A 182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVG-WNSLP-A----------- 248 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHS-SCCTT-H-----------
T ss_pred HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcc-Ccccc-c-----------
Confidence 9887777776655443322211 11111 11111111000 000000 00000 0
Q ss_pred ccCCcccccCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHh
Q 012668 172 IEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMV 251 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~ 251 (458)
.. ............... ...++. +.....++++..+...++.....++..+.+..+.+..+..+
T Consensus 249 ---------~~--~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (491)
T 4aps_A 249 ---------YI--NLLTIVAIAIPVFYF----AWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE 312 (491)
T ss_dssp ---------HH--HHHHHHHHHHHHHHH----HHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH
T ss_pred ---------ch--hhhhHHHHHHHHHHH----HHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 00 000000000000000 000000 00011233444445556666777788877777665444322
Q ss_pred -hcCCCcCcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012668 252 -MDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLA 330 (458)
Q Consensus 252 -~~~~~~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~ 330 (458)
.+.. ....+.+..++.+..++..++.+++.+ |.++|. ....+++.+|.++.++++.++.......
T Consensus 313 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 378 (491)
T 4aps_A 313 RVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWT----AWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY---- 378 (491)
T ss_dssp SCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHH----HTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC----
T ss_pred HhccC----ccCHHHHhccchHHHHHHHHHHHHHHH----HHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 2211 245677788888888888888888544 433221 4556778899999999988877654210
Q ss_pred hhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc
Q 012668 331 RELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTT 410 (458)
Q Consensus 331 ~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~ 410 (458)
+++...+.+++++.+++.++|+++..+..++++.+..|++.||.++|+++....+|+.+++.+.+.+.+
T Consensus 379 --------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~--- 447 (491)
T 4aps_A 379 --------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA--- 447 (491)
T ss_dssp --------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG---
T ss_pred --------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 001124677888899999999999999999999999999999999999999999999999999887642
Q ss_pred cCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012668 411 AGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
.++...|...++++++..++.++..++.+++
T Consensus 448 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 448 --------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp --------------SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred --------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234567788888888887777766666543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.7e-17 Score=163.36 Aligned_cols=317 Identities=14% Similarity=0.063 Sum_probs=184.7
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc-chhhhH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG-WGLGFG 107 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g-w~~~F~ 107 (458)
.+.+.+++++++.|+|.|...|...+++.|++++++ |+++++++..+.++|..+||.+++++.+..| ||+.|+
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~ 190 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY 190 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 366788999999999999999999999999999876 9999999999999999999999999888898 999999
Q ss_pred HHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchh
Q 012668 108 IPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCL 187 (458)
Q Consensus 108 i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
+.++..++..++.++..++ +|+..... +....+.. .. ++. ..+..++..+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------------~~~~~~~~-~~-~~~--------~~~~~~~~~~~ 241 (451)
T 1pw4_A 191 MPAFCAILVALFAFAMMRD----TPQSCGLP---------------PIEEYKND-YP-DDY--------NEKAEQELTAK 241 (451)
T ss_dssp HHHHHHHHHHHHHHHHCCC----SSTTTCCC---------------SCTTTCCC-----------------------CCT
T ss_pred HHHHHHHHHHHHHHhhccC----CHhhcCCC---------------Chhhhccc-cc-ccc--------hhhhhcccccc
Confidence 9887666555443333322 11110000 00000000 00 000 00000000000
Q ss_pred hhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccc
Q 012668 188 DKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLS 267 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 267 (458)
+.. .+.....+.+ ..+.......+..+......+. .+.....+.-....+.+.
T Consensus 242 ~~~---------------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~ 294 (451)
T 1pw4_A 242 QIF---------------------MQYVLPNKLL---WYIAIANVFVYLLRYGILDWSP---TYLKEVKHFALDKSSWAY 294 (451)
T ss_dssp HHH---------------------HHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHH---HHBTTBSCCCHHHHHHHH
T ss_pred cch---------------------HHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCHHHHHHHH
Confidence 000 0000001111 1111222222222222222221 222221211111123334
Q ss_pred cchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012668 268 SFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSV-LCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 268 ~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
.+..+..++..++..+ +.+|..+ ++++.+.++.++.. ++++.+.... ..+.
T Consensus 295 ~~~~~~~~~~~~~~g~----l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 346 (451)
T 1pw4_A 295 FLYEYAGIPGTLLCGW----MSDKVFR-----GNRGATGVFFMTLVTIATIVYWMNP-------------------AGNP 346 (451)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHTST-----TCHHHHHHHHHHHHHHHHHHTTSCC-------------------TTCH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhc-----CCchhHHHHHHHHHHHHHHHHHHhc-------------------ccCH
Confidence 4444444555555555 4444300 22344455554444 5554443311 1245
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHH-HHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTAL-GNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~i-g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
+......++.+++.....+...+++.+..|++.||.++|+.+....+ |..+++.+.+.+.+..
T Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---------------- 410 (451)
T 1pw4_A 347 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---------------- 410 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------------
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 56667788888988888899999999999999999999999999999 9999999999876321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012668 426 HLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
++...|.+.+++++++.++.++..++
T Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 411 GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 24566777787777777766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=145.03 Aligned_cols=267 Identities=10% Similarity=0.054 Sum_probs=159.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc-cccc------
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ-DNAG------ 101 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~-~~~g------ 101 (458)
.+.+.+++++++.|+|.|...|...+++.|++|+++ |+++++++....++|..+||.+++++. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 468889999999999999999999999999999887 999999999999999999999999998 5555
Q ss_pred -------------------chhhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchh
Q 012668 102 -------------------WGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLL 162 (458)
Q Consensus 102 -------------------w~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (458)
||+.|++.+...++..+.+++.+. ++.+++.++ +
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~---------------------~---- 241 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDNHS---------------------D---- 241 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTCCC---------------------C----
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccccccc---------------------c----
Confidence 999998877655554444433221 010000000 0
Q ss_pred hhccchhhhccCCcccccCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012668 163 YETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMS 242 (458)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 242 (458)
.++.+..+.. ++....+.+.... .....+...+....
T Consensus 242 ------------------~~~~~~~~~~----------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 278 (438)
T 3o7q_A 242 ------------------AKQGSFSASL----------------------SRLARIRHWRWAV---LAQFCYVGAQTACW 278 (438)
T ss_dssp ------------------SSTTSHHHHH----------------------HHHTTCSHHHHHH---HHHHHHHHHHHHHH
T ss_pred ------------------ccccchhhhH----------------------HHHHhChHHHHHH---HHHHHHHHHHHHHH
Confidence 0000000000 0000001111111 11111111111111
Q ss_pred hhHHHHHHhhcCCCcCcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 012668 243 TLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVV 322 (458)
Q Consensus 243 s~~~~~~~~~~~~~~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~ 322 (458)
+.+.... .+..++-.....+.+..+..+..++..++..+ +.+| .++++.+.++.++.++++++....
T Consensus 279 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~~~~~~~~~~~~~~~~ 345 (438)
T 3o7q_A 279 SYLIRYA--VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW----LISR-------FAPHKVLAAYALIAMALCLISAFA 345 (438)
T ss_dssp HHHHHHH--HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------SCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHh--hhccCCcchhHHHHHHHHHHHHHHHHHHHHHH----HHHH-------hcchHHHHHHHHHHHHHHHHHHHc
Confidence 1111110 11111100112223333444444455555555 4454 333456677777777776665543
Q ss_pred HHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHh
Q 012668 323 EINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFIL 402 (458)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~ 402 (458)
+..+.+...++.+++.....|...+++.+..|++ ++..+++.. ...+|+.+++.+.
T Consensus 346 ----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~ 401 (438)
T 3o7q_A 346 ----------------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVM 401 (438)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHH
T ss_pred ----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHH
Confidence 2223445668888999999999999999999977 888888877 6779999999999
Q ss_pred hhhhhh
Q 012668 403 TVVTYF 408 (458)
Q Consensus 403 ~~~~~~ 408 (458)
+.+.+.
T Consensus 402 g~l~~~ 407 (438)
T 3o7q_A 402 GFVSDA 407 (438)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987643
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=142.07 Aligned_cols=83 Identities=11% Similarity=0.106 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|++.+...|...+++.|++|+++ |+++++++....++|..+||.+++++.++.|||+.|++.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 67788899999999999999999999999998877 999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 012668 110 ALFMGFAIA 118 (458)
Q Consensus 110 ~i~~~l~~i 118 (458)
++..++..+
T Consensus 161 ~~~~~~~~~ 169 (375)
T 2gfp_A 161 LVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 875555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-11 Score=121.66 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc--------
Q 012668 28 PAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN-------- 99 (458)
Q Consensus 28 ~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~-------- 99 (458)
..+.+.++++|++.|+|.|+..+...++++|..|+++ |++..+++..+..+|.++++.++..+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 3478899999999999999999999999999999887 99999999999999999999888766543
Q ss_pred ccchhhhHHHHHHHHHHH
Q 012668 100 AGWGLGFGIPALFMGFAI 117 (458)
Q Consensus 100 ~gw~~~F~i~~i~~~l~~ 117 (458)
.+||+.+.+..+..++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFL 214 (491)
T ss_dssp THHHHHHHTTHHHHHHHH
T ss_pred hhhHHHhhhhhhhhhhhh
Confidence 357777766655444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-11 Score=124.50 Aligned_cols=138 Identities=7% Similarity=-0.055 Sum_probs=93.2
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012668 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
..++.+..++...+..+ +.+|. .+++.+.++.++.++++..+... .+.
T Consensus 265 ~~~~~~~~~~~~~~~g~----l~dr~-------g~~~~l~~~~~~~~~~~~~~~~~---------------------~~~ 312 (417)
T 2cfq_A 265 TTMGELLNASIMFFAPL----IINRI-------GGKNALLLAGTIMSVRIIGSSFA---------------------TSA 312 (417)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHH-------CHHHHHHHHHHHHHHHHHHHTTC---------------------CSH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHh-------cHHHHHHHHHHHHHHHHHHHHHh---------------------ccH
Confidence 33444444444555555 44443 23345666777766665554321 244
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHH-HHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012668 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSAL-SLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~-~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
+++++...+.+++.....+....++.+..|++.||...+. ++..+.+|+.+++.+.+.+.+. .
T Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~----------------~ 376 (417)
T 2cfq_A 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES----------------I 376 (417)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH----------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh----------------c
Confidence 5566666777888777778888999999999999999998 5888999999999999976531 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012668 426 HLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
++...|.+.+++++++.++.++..++.
T Consensus 377 g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 377 GFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 255668888888888777766555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-06 Score=87.77 Aligned_cols=144 Identities=14% Similarity=0.041 Sum_probs=104.3
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++..+..+...+..++.++ +.+| ..+++.+.++.++.+++.++..+.... .
T Consensus 65 g~~~~~~~~~~~~~~~~~G~----l~dr-------~g~r~~l~~~~~~~~~~~~~~~~~~~~-----------------~ 116 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGS----VSDR-------SNPRVFLPAGLILAAAVMLFMGFVPWA-----------------T 116 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHH-------SCHHHHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred HHHHHHHHHHHHHHHHhHHH----HHHh-------cCchHHHHHHHHHHHHHHHHHHhhhhc-----------------c
Confidence 34445555555566666666 4555 334467788888888888887762110 0
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+++++++..++.|+|.+...+...+++.+..|++.|+..+|++.....+|..+++.+.+.+.+..+ +|
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----~w------ 185 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DW------ 185 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CS------
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cH------
Confidence 2677788899999999999999999999999999999999999999999999999999987543210 13
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
...|.+.++++++..++.++..+
T Consensus 186 ----~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 186 ----HAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp ----TTCTHHHHHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34466666666666655544433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-06 Score=86.71 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=89.7
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++.....+...+..++.++ +.+| ..+++.+.++.++.+++.++...... .
T Consensus 64 g~~~~~~~~~~~i~~~~~G~----l~dr-------~g~r~~l~~~~~~~~~~~~~~~~~~~------------------~ 114 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGI----LMKK-------LSYKAGIITGLFLYALGAALFWPAAE------------------I 114 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHH----HHHH-------SCHHHHHHHHHHHHHHHHHHHHHHHH------------------T
T ss_pred HHHHHHHHHHHHHHHHhHHH----HHHH-------hcchHHHHHHHHHHHHHHHHHHhccc------------------c
Confidence 33444455555566666666 4555 34446788898888888887743211 1
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+.+.+++..++.|+|.+...+...+++.+..|++.|+..+++.+...++|..+++.+.+.+.
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888889999999999999999999999999999999999999999999999999998775
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.2e-06 Score=85.01 Aligned_cols=142 Identities=15% Similarity=0.038 Sum_probs=106.1
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhc-ccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 012668 263 PASLSSFDVISVIFWVPIYDKIIVPIARK-FTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVS 341 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r-~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
.+++.....+...+..++.++ +.+| ++ +++.+.++.++.+++.++....
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~----l~dr~~g-------~r~~~~~~~~~~~~~~~~~~~~------------------- 105 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGF----VADRIIG-------ARPAVFWGGVLIMLGHIVLALP------------------- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHTSC-------HHHHHHHHHHHHHHHHHHHHSC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhcccc-------chHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 344555566666677777777 4455 22 2356778888888887776542
Q ss_pred ccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhh--HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCC
Q 012668 342 VPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAM--RSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIP 419 (458)
Q Consensus 342 ~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~--~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~ 419 (458)
.+.+++++..++.|+|.+...|...+++.+..|++. |+...+.++...++|..+++.+.+.+.+..
T Consensus 106 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------- 173 (491)
T 4aps_A 106 --FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA---------- 173 (491)
T ss_dssp --CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------
T ss_pred --hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh----------
Confidence 367778889999999999999999999999999988 888889899999999999999999875321
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012668 420 DNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 420 ~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
++...|.+.+++.+++.+.+++..++.
T Consensus 174 ------g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 174 ------GYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 245667777777777776666555544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-06 Score=83.89 Aligned_cols=134 Identities=11% Similarity=0.030 Sum_probs=99.0
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++.....+...+..++..+ +.+|.++| +.+..+.++.+++.......+
T Consensus 38 g~~~~~~~~~~~~~~~~~g~----l~dr~g~r-------~~~~~~~~~~~~~~~~~~~~~-------------------- 86 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGP----ISDRVGRR-------PVILVGMSIFMLATLVAVTTS-------------------- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHH----HHTTSCCC-------CCCHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhCCc-------hhHHHHHHHHHHHHHHHHHhc--------------------
Confidence 34455555555666666666 45554332 345577777777777776643
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
+.+.++...++.|++.+...+...+++.+..|++.|+..++..+....+|..+++.+.+.+.+.
T Consensus 87 -~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------------- 150 (375)
T 2gfp_A 87 -SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM--------------- 150 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---------------
T ss_pred -cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---------------
Confidence 6677888999999999999999999999999999999999999999999999999999876421
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLY 445 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~ 445 (458)
.++...|.+.+++.++..+..
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 151 -WNWRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHCCC
T ss_pred -ccHHHHHHHHHHHHHHHHHHH
Confidence 124556666666666555533
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.1e-06 Score=84.57 Aligned_cols=137 Identities=17% Similarity=0.126 Sum_probs=97.5
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012668 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++..+..+..++..++..+ +.+|+ ..+++.+.++.++.+++.++..... .
T Consensus 58 ~~~~~~~~~~~~~~~~~G~----l~dr~------~g~r~~~~~~~~~~~~~~~~~~~~~--------------------~ 107 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGW----IADRF------FGKYNTILWLSLIYCVGHAFLAIFE--------------------H 107 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHH----HHTTS------SCSHHHHHHHHHHHHHHHHHHHHTS--------------------S
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHH------hcchHHHHHHHHHHHHHHHHHHHhc--------------------c
Confidence 3344444445555566665 44443 0444667788888888877766531 1
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHH---HHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCC
Q 012668 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSAL---SLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDN 421 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~---~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~ 421 (458)
+.+++++..++.|+|++...|...+++.+..|++.|+...+. ++...++|..+|+.+.+.+.+.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~------------- 174 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN------------- 174 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-------------
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 567778889999999999999999999999999999877666 8899999999999988876531
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHH
Q 012668 422 LNKGHLDYFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 422 ~~~~~~~~~f~~~a~i~~~~~v~~~~ 447 (458)
.++...|.+.+++.++..+.+++
T Consensus 175 ---~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 175 ---FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 12456677777766666555544
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0054 Score=61.69 Aligned_cols=99 Identities=10% Similarity=0.088 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC----CCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc
Q 012668 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQN----VSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP 376 (458)
Q Consensus 301 ~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP 376 (458)
+++.+.++.++..++-++.++.... ....... .....+++.+++..+++|+|++...+....++.+.+|
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~-------~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p 156 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELG-------FTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTT-------TSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3366778888877776666532100 0000000 0012367788899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012668 377 DAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 377 ~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
++.||...++.+....+|..++..+.....
T Consensus 157 ~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 157 AHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 999999999999999999999888777654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00015 Score=72.01 Aligned_cols=89 Identities=10% Similarity=-0.038 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhH-HHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNW-FYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~-~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
+.+.+++...+.+++.+...+...+.+.|.+|++. |++++++ +..+.++|..+||.++|++.++.||+..|.+
T Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~ 384 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHH
Confidence 34555566666777766666777889999998765 8999998 5778889999999999999998899999998
Q ss_pred HHHHHHHHHHHHHhcC
Q 012668 109 PALFMGFAIASFFSGT 124 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~ 124 (458)
.++..+++.++.+...
T Consensus 385 ~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 385 LGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8877777766554433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.63 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.29 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.51 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 97.7 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.7e-15 Score=149.84 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc-ccchhhhHH
Q 012668 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN-AGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~-~gw~~~F~i 108 (458)
+...+++.+++.|++.|...|...++++|++++++ |+++++++..+.++|..++|.+++++.+. .+||+.|++
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~ 188 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 188 (447)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence 56788999999999999999999999999999887 99999999999999999999999886664 489999999
Q ss_pred HHHHHHHHHHHHHhc
Q 012668 109 PALFMGFAIASFFSG 123 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~ 123 (458)
.++..++..++.+..
T Consensus 189 ~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 189 PAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHh
Confidence 887665555544333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=1.2e-11 Score=119.23 Aligned_cols=119 Identities=8% Similarity=-0.038 Sum_probs=93.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012668 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
..+.+.+.++.++.+++++.+... .+.++.++..++.+++.+...+...+++.+..|++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 344 (417)
T d1pv7a_ 286 IGGKNALLLAGTIMSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR 344 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred cccccchhhhHHHHHHhhhccccc---------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh
Confidence 344466777877777777766553 36677788889999999999999999999999999
Q ss_pred hHHHHHHHH-HHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012668 379 MRSLCSALS-LLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 379 ~~g~~~g~~-~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
.||...|+. ++...+|..+++.+.+.+.+.. ++...|.+.++++++..++..+..|+.++
T Consensus 345 ~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 345 FSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999975 5678899999999988776432 24567888888888888877777665543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=1.3e-06 Score=84.68 Aligned_cols=143 Identities=14% Similarity=0.035 Sum_probs=102.9
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012668 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++.....+...+..++.++ +.+| ..+++.+.++.++.+++.++.+..... .
T Consensus 62 g~~~s~~~~~~~~~~~~~G~----l~Dr-------~g~r~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 113 (447)
T d1pw4a_ 62 GFALSGISIAYGFSKFIMGS----VSDR-------SNPRVFLPAGLILAAAVMLFMGFVPWA-----------------T 113 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHH-------SCHHHHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHH-------cCchHHHHHHHHHHHHHHhhccccchh-----------------h
Confidence 34455555555566666666 4555 344467788888888888877764322 1
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012668 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+.+++++..++.+++++...+...+++.+..|++.|+..+|+++....+|..+++.+......... +|
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-----~w------ 182 (447)
T d1pw4a_ 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DW------ 182 (447)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CS------
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh-----cc------
Confidence 3667788899999999999999999999999999999999999999999999999988776543221 23
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhh
Q 012668 424 KGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
...|.+.++++++..++.+...
T Consensus 183 ----~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 183 ----HAALYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp ----TTCTHHHHHHHHHHHHHHHHHC
T ss_pred ----cccchhhhhhHHHHHHHHHHhc
Confidence 2335555556555555554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=8e-06 Score=77.10 Aligned_cols=89 Identities=9% Similarity=-0.039 Sum_probs=75.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHH-HHHHHHHHHHhHhhhhccccccchhhhH
Q 012668 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFY-FSINIGALISSSLIVWIQDNAGWGLGFG 107 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~-~~~niG~~igp~l~g~l~~~~gw~~~F~ 107 (458)
.+.+..++..++.|++.+...|...+.+.|.+|+++ |++++++.+ ....+|..++|.++|++.|++||++.|+
T Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 367777888899999999999999999999999887 999999864 5677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012668 108 IPALFMGFAIASFFSG 123 (458)
Q Consensus 108 i~~i~~~l~~ii~~~~ 123 (458)
+.++..++..++.++.
T Consensus 384 ~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 384 VLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9887666666554433
|