Query 012670
Match_columns 458
No_of_seqs 151 out of 1419
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:05:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 2.3E-47 5E-52 393.7 28.4 442 4-457 121-568 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 1.8E-38 4E-43 312.5 20.7 370 29-456 115-494 (498)
3 PRK15462 dipeptide/tripeptide 100.0 5.7E-32 1.2E-36 275.6 31.6 377 32-457 101-487 (493)
4 PRK10207 dipeptide/tripeptide 100.0 1.1E-30 2.4E-35 269.4 32.0 372 32-455 106-482 (489)
5 TIGR00924 yjdL_sub1_fam amino 100.0 6.7E-30 1.4E-34 263.3 31.2 360 30-454 101-473 (475)
6 PRK09584 tppB putative tripept 100.0 2.8E-29 6.1E-34 260.1 30.6 369 31-454 112-484 (500)
7 PF00854 PTR2: POT family; In 100.0 2.6E-30 5.7E-35 258.5 11.8 339 26-392 28-370 (372)
8 TIGR00926 2A1704 Peptide:H+ sy 100.0 2.1E-27 4.6E-32 249.9 33.1 360 31-452 85-654 (654)
9 PRK11646 multidrug resistance 99.7 1.2E-15 2.5E-20 154.3 20.8 295 30-453 98-392 (400)
10 PRK10489 enterobactin exporter 99.7 4.9E-15 1.1E-19 150.5 24.6 299 29-456 108-406 (417)
11 PRK03545 putative arabinose tr 99.7 6E-15 1.3E-19 148.5 23.4 285 29-450 95-381 (390)
12 KOG2532 Permease of the major 99.7 8.5E-17 1.8E-21 163.7 9.9 332 5-449 111-447 (466)
13 PRK09874 drug efflux system pr 99.7 4.9E-15 1.1E-19 149.7 20.2 300 29-455 105-404 (408)
14 PRK05122 major facilitator sup 99.7 4.7E-14 1E-18 142.4 27.2 282 30-452 111-392 (399)
15 TIGR00902 2A0127 phenyl propri 99.7 3.7E-14 8E-19 142.5 25.1 282 29-444 92-374 (382)
16 TIGR00893 2A0114 d-galactonate 99.7 1.5E-14 3.2E-19 144.4 22.0 86 30-121 81-166 (399)
17 TIGR00900 2A0121 H+ Antiporter 99.6 1.5E-14 3.2E-19 143.3 21.3 265 30-406 91-361 (365)
18 PRK11551 putative 3-hydroxyphe 99.6 4.1E-14 8.9E-19 143.1 23.8 85 29-119 101-185 (406)
19 PRK12382 putative transporter; 99.6 6.1E-14 1.3E-18 141.2 24.7 278 29-448 110-388 (392)
20 TIGR00711 efflux_EmrB drug res 99.6 5.2E-15 1.1E-19 153.1 17.4 311 29-407 88-409 (485)
21 PRK14995 methyl viologen resis 99.6 1.7E-14 3.7E-19 149.9 20.9 314 29-407 92-412 (495)
22 PRK15402 multidrug efflux syst 99.6 1.1E-13 2.3E-18 140.2 24.9 269 30-406 100-368 (406)
23 COG2814 AraJ Arabinose efflux 99.6 1.1E-13 2.3E-18 136.0 23.0 287 30-454 100-391 (394)
24 TIGR00894 2A0114euk Na(+)-depe 99.6 5.1E-14 1.1E-18 145.2 21.8 86 30-121 130-216 (465)
25 PRK11128 putative 3-phenylprop 99.6 1.7E-13 3.6E-18 137.7 24.6 262 29-407 92-354 (382)
26 PRK06814 acylglycerophosphoeth 99.6 3.5E-14 7.7E-19 162.0 19.5 288 29-406 106-394 (1140)
27 PF07690 MFS_1: Major Facilita 99.6 1.9E-14 4.1E-19 141.9 14.4 84 30-119 84-167 (352)
28 PRK10504 putative transporter; 99.6 3.2E-13 7E-18 139.4 24.0 87 30-122 97-183 (471)
29 PRK10054 putative transporter; 99.6 7.4E-14 1.6E-18 140.9 18.6 263 30-407 95-358 (395)
30 PRK11663 regulatory protein Uh 99.6 3.1E-13 6.7E-18 138.2 23.2 82 29-116 109-190 (434)
31 TIGR00892 2A0113 monocarboxyla 99.6 5.5E-14 1.2E-18 144.5 17.6 307 30-443 106-415 (455)
32 TIGR00899 2A0120 sugar efflux 99.6 3.9E-13 8.6E-18 134.0 22.9 87 29-121 85-173 (375)
33 cd06174 MFS The Major Facilita 99.6 3E-13 6.5E-18 132.8 21.7 264 29-446 85-349 (352)
34 TIGR00903 2A0129 major facilit 99.6 2.8E-13 6.1E-18 135.2 21.3 84 30-120 78-161 (368)
35 PRK10213 nepI ribonucleoside t 99.6 5.9E-13 1.3E-17 134.3 23.6 83 29-117 106-188 (394)
36 TIGR00879 SP MFS transporter, 99.6 5.2E-13 1.1E-17 137.0 22.9 87 30-122 126-215 (481)
37 PRK10091 MFS transport protein 99.6 8.2E-13 1.8E-17 132.7 23.3 85 29-119 89-173 (382)
38 PRK09705 cynX putative cyanate 99.6 1E-12 2.2E-17 132.5 23.8 285 30-451 96-383 (393)
39 PF05977 MFS_3: Transmembrane 99.5 9E-13 1.9E-17 136.6 23.2 268 28-407 100-368 (524)
40 PRK11195 lysophospholipid tran 99.5 1.3E-12 2.8E-17 131.8 23.6 78 35-119 92-169 (393)
41 TIGR00710 efflux_Bcr_CflA drug 99.5 1.6E-12 3.4E-17 130.1 21.9 88 29-122 91-178 (385)
42 PRK11010 ampG muropeptide tran 99.5 4.1E-12 9E-17 131.8 25.1 88 29-122 105-193 (491)
43 PRK10077 xylE D-xylose transpo 99.5 3.5E-12 7.5E-17 131.9 24.4 87 30-122 119-213 (479)
44 PRK03699 putative transporter; 99.5 3.1E-12 6.7E-17 129.1 22.9 85 29-119 93-178 (394)
45 PRK15011 sugar efflux transpor 99.5 3.5E-12 7.6E-17 128.6 22.9 86 30-121 104-191 (393)
46 PRK11102 bicyclomycin/multidru 99.5 8.8E-12 1.9E-16 124.6 25.6 85 30-120 78-162 (377)
47 PRK09556 uhpT sugar phosphate 99.5 1.9E-12 4.2E-17 133.6 20.6 85 29-119 120-207 (467)
48 TIGR00895 2A0115 benzoate tran 99.5 4.2E-12 9.2E-17 127.2 22.6 84 30-119 104-187 (398)
49 PRK15403 multidrug efflux syst 99.5 1E-11 2.2E-16 126.1 24.7 85 29-119 102-186 (413)
50 TIGR00890 2A0111 Oxalate/Forma 99.5 1.6E-12 3.4E-17 129.2 18.2 287 29-442 89-375 (377)
51 PRK12307 putative sialic acid 99.5 3.6E-12 7.8E-17 129.7 20.6 77 29-111 104-180 (426)
52 TIGR00901 2A0125 AmpG-related 99.5 3.8E-12 8.3E-17 126.4 20.2 88 29-122 81-176 (356)
53 PRK11273 glpT sn-glycerol-3-ph 99.5 8.5E-12 1.8E-16 128.2 23.2 84 30-119 119-203 (452)
54 PRK03633 putative MFS family t 99.4 2.4E-11 5.3E-16 121.9 24.2 69 29-103 92-160 (381)
55 PRK10406 alpha-ketoglutarate t 99.4 2.4E-11 5.3E-16 124.1 24.2 81 30-116 123-211 (432)
56 COG2271 UhpC Sugar phosphate p 99.4 6E-12 1.3E-16 122.6 18.5 89 29-123 115-206 (448)
57 TIGR00898 2A0119 cation transp 99.4 2.4E-11 5.1E-16 126.6 24.6 84 30-122 179-262 (505)
58 PRK09952 shikimate transporter 99.4 3.5E-11 7.5E-16 123.2 25.3 76 33-114 127-210 (438)
59 TIGR00883 2A0106 metabolite-pr 99.4 7.6E-12 1.6E-16 125.1 20.0 82 32-119 97-186 (394)
60 TIGR02332 HpaX 4-hydroxyphenyl 99.4 1.9E-11 4.2E-16 124.0 22.4 86 29-120 94-185 (412)
61 PRK08633 2-acyl-glycerophospho 99.4 2.7E-11 5.9E-16 138.5 25.3 270 30-406 102-382 (1146)
62 TIGR00891 2A0112 putative sial 99.4 1.5E-11 3.3E-16 123.6 20.2 82 30-117 99-182 (405)
63 PRK11652 emrD multidrug resist 99.4 4.4E-11 9.4E-16 120.5 23.3 83 30-118 95-177 (394)
64 PRK10642 proline/glycine betai 99.4 7.6E-11 1.7E-15 122.5 25.6 77 33-115 120-204 (490)
65 TIGR01299 synapt_SV2 synaptic 99.4 1E-10 2.3E-15 125.5 26.7 87 30-122 254-353 (742)
66 PRK11902 ampG muropeptide tran 99.4 1.1E-10 2.5E-15 117.9 25.8 85 30-120 93-178 (402)
67 PRK10473 multidrug efflux syst 99.4 4.7E-11 1E-15 120.2 22.8 84 30-119 90-173 (392)
68 PRK15075 citrate-proton sympor 99.4 5.1E-11 1.1E-15 121.8 22.4 73 33-111 119-199 (434)
69 TIGR00881 2A0104 phosphoglycer 99.4 1.5E-11 3.3E-16 122.2 17.9 85 30-120 82-167 (379)
70 TIGR00897 2A0118 polyol permea 99.4 9.1E-11 2E-15 118.7 23.0 76 30-111 104-180 (402)
71 TIGR00712 glpT glycerol-3-phos 99.4 4.5E-11 9.8E-16 122.3 19.9 85 30-120 117-202 (438)
72 TIGR00792 gph sugar (Glycoside 99.4 1.8E-10 3.9E-15 117.6 24.2 269 31-409 99-381 (437)
73 PRK11043 putative transporter; 99.4 1.6E-10 3.4E-15 116.8 23.4 86 30-121 93-178 (401)
74 PRK03893 putative sialic acid 99.4 3.6E-11 7.9E-16 124.9 18.9 80 29-114 106-185 (496)
75 PRK09528 lacY galactoside perm 99.3 4.4E-11 9.4E-16 121.7 17.7 139 265-451 266-405 (420)
76 PLN00028 nitrate transmembrane 99.3 9.3E-11 2E-15 121.3 19.8 85 30-121 123-216 (476)
77 TIGR01272 gluP glucose/galacto 99.3 3.6E-10 7.8E-15 110.2 21.3 90 25-120 4-109 (310)
78 KOG3764 Vesicular amine transp 99.3 4.5E-11 9.7E-16 115.3 13.7 96 27-127 155-250 (464)
79 KOG1330 Sugar transporter/spin 99.3 6.9E-12 1.5E-16 123.3 8.3 94 25-124 115-209 (493)
80 TIGR02718 sider_RhtX_FptX side 99.3 6.9E-10 1.5E-14 111.7 23.0 84 34-123 100-183 (390)
81 TIGR00887 2A0109 phosphate:H+ 99.3 1.1E-09 2.3E-14 114.3 24.3 84 30-119 114-220 (502)
82 TIGR00896 CynX cyanate transpo 99.3 6.1E-10 1.3E-14 110.6 21.0 80 29-115 85-166 (355)
83 TIGR00882 2A0105 oligosacchari 99.3 4.2E-10 9.2E-15 113.5 19.8 288 34-446 102-392 (396)
84 TIGR01301 GPH_sucrose GPH fami 99.2 2E-09 4.3E-14 110.1 23.2 334 32-453 115-475 (477)
85 TIGR00889 2A0110 nucleoside tr 99.2 1.5E-09 3.3E-14 110.4 21.2 148 267-452 257-405 (418)
86 PF13347 MFS_2: MFS/sugar tran 99.2 2.4E-09 5.3E-14 109.2 22.3 270 30-410 102-386 (428)
87 PRK15034 nitrate/nitrite trans 99.2 2.4E-09 5.1E-14 108.9 21.5 89 29-124 126-232 (462)
88 PRK09848 glucuronide transport 99.2 5.3E-09 1.2E-13 107.4 23.4 92 299-409 291-389 (448)
89 PRK10133 L-fucose transporter; 99.2 4.6E-09 1E-13 107.5 21.5 64 28-97 114-177 (438)
90 TIGR00788 fbt folate/biopterin 99.1 1.1E-09 2.4E-14 113.0 16.5 285 31-409 120-414 (468)
91 COG2223 NarK Nitrate/nitrite t 99.1 2.6E-09 5.6E-14 104.4 17.5 89 30-126 104-195 (417)
92 KOG2533 Permease of the major 99.1 2.2E-08 4.7E-13 102.8 23.1 87 28-120 131-223 (495)
93 PF03209 PUCC: PUCC protein; 99.1 4.6E-08 1E-12 96.0 23.5 272 27-410 85-365 (403)
94 PRK09669 putative symporter Ya 99.1 3.7E-08 8E-13 101.0 23.5 66 345-410 318-390 (444)
95 TIGR00886 2A0108 nitrite extru 99.1 2.3E-09 4.9E-14 106.6 13.8 77 30-113 90-177 (366)
96 PF06609 TRI12: Fungal trichot 99.0 1.3E-08 2.7E-13 106.0 19.2 318 30-406 130-465 (599)
97 TIGR00885 fucP L-fucose:H+ sym 99.0 2.3E-08 5.1E-13 101.4 19.3 84 29-118 92-201 (410)
98 TIGR00805 oat sodium-independe 99.0 7.2E-08 1.6E-12 102.9 23.8 90 30-125 171-282 (633)
99 KOG2615 Permease of the major 98.9 3.4E-08 7.5E-13 95.1 15.1 286 26-406 116-412 (451)
100 PRK10429 melibiose:sodium symp 98.9 2.9E-07 6.2E-12 95.3 22.2 65 345-409 323-394 (473)
101 COG0738 FucP Fucose permease [ 98.9 1.5E-07 3.3E-12 91.7 18.4 293 26-453 99-413 (422)
102 PF11700 ATG22: Vacuole efflux 98.8 1.9E-06 4.1E-11 88.7 26.5 98 345-457 379-476 (477)
103 KOG0569 Permease of the major 98.8 4.5E-07 9.8E-12 92.2 21.5 342 29-455 114-460 (485)
104 PRK11462 putative transporter; 98.8 1.6E-06 3.5E-11 89.4 24.9 87 31-122 109-202 (460)
105 COG2807 CynX Cyanate permease 98.8 8E-07 1.7E-11 85.5 20.5 85 30-121 98-183 (395)
106 PF03825 Nuc_H_symport: Nucleo 98.7 2.2E-06 4.7E-11 86.5 21.8 128 299-452 270-398 (400)
107 TIGR00806 rfc RFC reduced fola 98.7 7.4E-07 1.6E-11 89.8 17.4 85 30-122 114-201 (511)
108 KOG0255 Synaptic vesicle trans 98.7 8.7E-06 1.9E-10 85.3 25.6 86 25-119 165-250 (521)
109 KOG2504 Monocarboxylate transp 98.7 5.3E-07 1.2E-11 93.4 15.3 339 29-449 132-476 (509)
110 COG2814 AraJ Arabinose efflux 98.6 1.2E-06 2.7E-11 86.5 16.3 141 262-450 49-189 (394)
111 PRK03545 putative arabinose tr 98.6 1.8E-06 3.9E-11 86.9 17.2 137 266-450 49-185 (390)
112 KOG1330 Sugar transporter/spin 98.5 1.3E-07 2.7E-12 93.6 6.8 140 267-453 74-213 (493)
113 KOG4686 Predicted sugar transp 98.5 2.2E-06 4.8E-11 79.6 13.7 309 29-452 134-446 (459)
114 TIGR02332 HpaX 4-hydroxyphenyl 98.5 5.9E-06 1.3E-10 83.9 17.0 142 266-449 48-189 (412)
115 PF01306 LacY_symp: LacY proto 98.5 2.6E-05 5.7E-10 77.9 20.9 119 299-454 286-405 (412)
116 COG2211 MelB Na+/melibiose sym 98.5 2.8E-05 6.1E-10 78.6 21.0 273 30-409 111-397 (467)
117 PRK10213 nepI ribonucleoside t 98.4 1.8E-05 3.9E-10 79.9 19.2 129 266-442 60-188 (394)
118 PRK14995 methyl viologen resis 98.4 1.5E-05 3.3E-10 82.9 18.8 140 263-450 43-183 (495)
119 TIGR00710 efflux_Bcr_CflA drug 98.4 1.1E-05 2.4E-10 80.5 17.1 139 264-450 43-181 (385)
120 PRK11646 multidrug resistance 98.4 1.5E-05 3.3E-10 80.5 17.3 125 273-446 58-182 (400)
121 PRK10054 putative transporter; 98.4 1.5E-05 3.3E-10 80.5 17.1 138 263-449 45-182 (395)
122 TIGR00880 2_A_01_02 Multidrug 98.4 1.5E-05 3.2E-10 66.8 14.4 131 269-447 6-136 (141)
123 PRK11663 regulatory protein Uh 98.4 2.2E-05 4.9E-10 80.2 18.2 135 265-447 62-196 (434)
124 PF03092 BT1: BT1 family; Int 98.4 1.2E-05 2.6E-10 82.1 15.9 92 30-125 85-176 (433)
125 TIGR00711 efflux_EmrB drug res 98.4 1E-05 2.2E-10 83.7 15.7 140 263-450 39-178 (485)
126 PRK10091 MFS transport protein 98.3 2.2E-05 4.7E-10 78.8 17.4 139 264-450 41-179 (382)
127 PRK11551 putative 3-hydroxyphe 98.3 2.8E-05 6E-10 78.6 17.8 110 264-405 53-162 (406)
128 PF07690 MFS_1: Major Facilita 98.3 1.1E-05 2.3E-10 79.3 14.4 134 263-444 34-167 (352)
129 KOG0254 Predicted transporter 98.3 6.1E-05 1.3E-09 78.8 20.5 84 30-119 141-225 (513)
130 TIGR00900 2A0121 H+ Antiporter 98.3 3E-05 6.5E-10 76.5 17.3 117 264-407 37-153 (365)
131 PRK10504 putative transporter; 98.3 3.1E-05 6.7E-10 80.0 17.7 139 265-451 49-187 (471)
132 COG2270 Permeases of the major 98.3 6.7E-05 1.5E-09 74.0 18.4 90 300-410 316-405 (438)
133 TIGR00891 2A0112 putative sial 98.3 3.2E-05 7E-10 77.6 16.7 111 264-406 50-160 (405)
134 TIGR00805 oat sodium-independe 98.3 5.6E-06 1.2E-10 88.5 11.2 172 263-451 70-283 (633)
135 TIGR00893 2A0114 d-galactonate 98.2 1.5E-05 3.3E-10 79.2 13.3 138 264-449 32-169 (399)
136 KOG3764 Vesicular amine transp 98.2 5E-06 1.1E-10 81.0 9.0 148 260-455 105-253 (464)
137 PRK09874 drug efflux system pr 98.2 0.00013 2.7E-09 73.7 19.2 136 266-450 59-194 (408)
138 PRK15403 multidrug efflux syst 98.2 9.7E-05 2.1E-09 75.1 18.4 133 270-450 60-192 (413)
139 TIGR00880 2_A_01_02 Multidrug 98.2 2.8E-06 6.1E-11 71.3 5.9 87 30-122 50-136 (141)
140 KOG3626 Organic anion transpor 98.2 0.00049 1.1E-08 73.0 23.0 89 33-127 239-346 (735)
141 PRK15402 multidrug efflux syst 98.1 0.00013 2.9E-09 73.6 18.0 133 268-448 55-187 (406)
142 PRK10473 multidrug efflux syst 98.1 0.00013 2.8E-09 73.4 17.6 136 266-449 43-178 (392)
143 PTZ00207 hypothetical protein; 98.1 0.00068 1.5E-08 71.4 23.2 82 29-119 118-200 (591)
144 PRK09556 uhpT sugar phosphate 98.1 1.9E-05 4.2E-10 81.5 10.7 144 265-448 68-211 (467)
145 PRK03699 putative transporter; 98.1 0.00017 3.6E-09 72.7 17.2 134 266-446 47-180 (394)
146 PRK11102 bicyclomycin/multidru 98.1 8.9E-05 1.9E-09 73.9 15.0 135 267-449 32-166 (377)
147 TIGR00895 2A0115 benzoate tran 98.1 4.1E-05 8.9E-10 76.5 12.4 109 266-406 57-165 (398)
148 TIGR00885 fucP L-fucose:H+ sym 98.1 0.00027 5.8E-09 71.8 18.4 115 263-406 40-154 (410)
149 TIGR00924 yjdL_sub1_fam amino 98.0 7.3E-05 1.6E-09 77.4 14.1 140 266-452 53-195 (475)
150 PRK03633 putative MFS family t 98.0 0.00021 4.5E-09 71.7 17.1 112 263-406 43-154 (381)
151 PRK05122 major facilitator sup 98.0 5.8E-06 1.3E-10 83.4 5.7 90 30-125 301-390 (399)
152 PRK10207 dipeptide/tripeptide 98.0 7.9E-05 1.7E-09 77.4 14.0 106 272-407 61-168 (489)
153 TIGR00712 glpT glycerol-3-phos 98.0 0.00018 4E-09 73.6 16.4 144 264-450 64-207 (438)
154 cd06174 MFS The Major Facilita 98.0 0.00014 3.1E-09 71.0 14.7 134 264-445 37-170 (352)
155 PRK09705 cynX putative cyanate 98.0 0.00019 4E-09 72.4 15.8 110 264-406 47-156 (393)
156 TIGR00881 2A0104 phosphoglycer 98.0 2.1E-05 4.6E-10 77.9 8.8 137 265-449 34-171 (379)
157 PRK11652 emrD multidrug resist 98.0 0.00042 9.2E-09 69.7 18.2 134 266-447 48-181 (394)
158 TIGR00903 2A0129 major facilit 98.0 0.0002 4.3E-09 71.6 15.6 90 345-451 78-167 (368)
159 TIGR01299 synapt_SV2 synaptic 98.0 0.00056 1.2E-08 74.1 20.0 110 265-406 206-315 (742)
160 TIGR00886 2A0108 nitrite extru 98.0 0.00038 8.2E-09 69.0 17.3 112 263-406 39-150 (366)
161 PRK12382 putative transporter; 98.0 0.00024 5.3E-09 71.4 16.0 119 264-406 54-172 (392)
162 PRK12307 putative sialic acid 98.0 0.00047 1E-08 70.1 18.2 111 264-406 56-166 (426)
163 PRK03893 putative sialic acid 98.0 0.00041 8.9E-09 72.0 18.1 109 266-406 60-168 (496)
164 PRK09584 tppB putative tripept 97.9 0.00025 5.5E-09 73.9 16.1 116 301-452 87-204 (500)
165 PRK11043 putative transporter; 97.9 0.00054 1.2E-08 69.1 18.1 134 266-447 46-179 (401)
166 TIGR00890 2A0111 Oxalate/Forma 97.9 0.00026 5.7E-09 70.0 15.5 138 263-449 40-177 (377)
167 PF03137 OATP: Organic Anion T 97.9 1.6E-06 3.4E-11 90.6 -0.6 93 30-128 140-254 (539)
168 PRK11273 glpT sn-glycerol-3-ph 97.9 0.00056 1.2E-08 70.3 18.1 140 267-450 69-209 (452)
169 TIGR00879 SP MFS transporter, 97.9 0.0002 4.4E-09 73.2 14.4 110 264-402 74-183 (481)
170 PRK10489 enterobactin exporter 97.9 0.00016 3.5E-09 73.4 13.5 117 263-406 54-170 (417)
171 PRK11195 lysophospholipid tran 97.9 0.00055 1.2E-08 69.1 17.1 109 263-406 40-148 (393)
172 COG2271 UhpC Sugar phosphate p 97.9 0.00013 2.8E-09 72.0 11.0 117 299-452 91-209 (448)
173 TIGR00897 2A0118 polyol permea 97.9 0.00068 1.5E-08 68.5 16.9 116 263-406 50-166 (402)
174 PF00083 Sugar_tr: Sugar (and 97.8 2.4E-08 5.1E-13 102.5 -16.3 83 30-118 101-186 (451)
175 TIGR00894 2A0114euk Na(+)-depe 97.8 0.00016 3.5E-09 74.5 11.9 132 272-448 87-218 (465)
176 KOG3762 Predicted transporter 97.8 0.0002 4.3E-09 72.6 11.7 143 266-456 411-554 (618)
177 KOG2816 Predicted transporter 97.8 0.00021 4.6E-09 73.1 12.1 262 47-410 128-394 (463)
178 TIGR00899 2A0120 sugar efflux 97.8 0.00058 1.3E-08 67.8 15.1 139 264-450 36-177 (375)
179 TIGR00889 2A0110 nucleoside tr 97.8 2.4E-05 5.1E-10 79.7 5.1 89 31-125 308-403 (418)
180 PRK15462 dipeptide/tripeptide 97.8 0.00049 1.1E-08 71.1 14.6 115 302-452 76-192 (493)
181 PF05977 MFS_3: Transmembrane 97.8 0.0012 2.7E-08 68.8 17.4 121 260-407 44-164 (524)
182 PTZ00207 hypothetical protein; 97.8 0.00092 2E-08 70.4 16.5 121 299-452 88-208 (591)
183 TIGR00898 2A0119 cation transp 97.8 0.00025 5.4E-09 73.9 12.4 132 264-446 130-261 (505)
184 TIGR00892 2A0113 monocarboxyla 97.8 0.00059 1.3E-08 70.3 14.9 135 265-448 58-193 (455)
185 KOG0253 Synaptic vesicle trans 97.8 0.009 2E-07 58.2 21.4 83 27-117 162-245 (528)
186 PLN00028 nitrate transmembrane 97.8 0.0015 3.2E-08 67.7 17.8 117 303-448 102-218 (476)
187 PRK10133 L-fucose transporter; 97.7 0.0025 5.4E-08 65.3 19.1 113 265-406 65-177 (438)
188 PRK08633 2-acyl-glycerophospho 97.7 0.00092 2E-08 76.9 17.4 63 345-407 102-164 (1146)
189 TIGR01301 GPH_sucrose GPH fami 97.7 0.0018 3.9E-08 66.6 17.1 170 263-452 41-221 (477)
190 PRK15034 nitrate/nitrite trans 97.7 0.002 4.4E-08 65.9 17.3 89 299-404 97-185 (462)
191 TIGR00806 rfc RFC reduced fola 97.6 0.0038 8.3E-08 63.5 17.6 85 299-405 89-173 (511)
192 PRK10077 xylE D-xylose transpo 97.6 0.0029 6.3E-08 65.3 17.4 152 266-445 60-211 (479)
193 PRK11010 ampG muropeptide tran 97.6 0.0065 1.4E-07 63.2 19.4 110 305-447 84-193 (491)
194 KOG2533 Permease of the major 97.5 0.002 4.3E-08 66.6 14.3 95 345-449 133-227 (495)
195 PRK10642 proline/glycine betai 97.5 0.0014 3E-08 68.2 13.3 110 277-406 69-178 (490)
196 TIGR00901 2A0125 AmpG-related 97.5 0.0029 6.3E-08 62.6 14.9 116 305-446 60-175 (356)
197 KOG2563 Permease of the major 97.5 0.002 4.4E-08 64.2 13.3 61 32-98 141-201 (480)
198 PRK06814 acylglycerophosphoeth 97.5 0.00062 1.3E-08 78.3 11.5 63 345-407 107-169 (1140)
199 TIGR00887 2A0109 phosphate:H+ 97.5 0.0017 3.7E-08 67.8 13.7 114 267-406 62-175 (502)
200 KOG3626 Organic anion transpor 97.5 0.00051 1.1E-08 72.9 9.6 152 299-456 159-350 (735)
201 TIGR00896 CynX cyanate transpo 97.5 0.0023 4.9E-08 63.3 13.9 109 264-406 38-146 (355)
202 KOG2325 Predicted transporter/ 97.4 0.00057 1.2E-08 69.5 9.2 64 344-407 385-449 (488)
203 PF03137 OATP: Organic Anion T 97.4 2.6E-05 5.6E-10 81.6 -0.8 151 299-455 65-256 (539)
204 PRK10406 alpha-ketoglutarate t 97.4 0.0016 3.4E-08 66.5 12.0 111 276-406 74-184 (432)
205 PRK11902 ampG muropeptide tran 97.4 0.0074 1.6E-07 60.9 16.8 109 304-445 70-178 (402)
206 KOG2532 Permease of the major 97.4 0.003 6.6E-08 64.9 13.6 118 299-450 100-217 (466)
207 TIGR00792 gph sugar (Glycoside 97.3 0.002 4.3E-08 65.6 12.0 154 267-450 41-195 (437)
208 KOG3098 Uncharacterized conser 97.3 0.058 1.3E-06 54.9 21.9 157 266-453 280-439 (461)
209 PRK09952 shikimate transporter 97.3 0.0031 6.6E-08 64.6 12.3 112 275-406 74-185 (438)
210 TIGR00883 2A0106 metabolite-pr 97.2 0.0021 4.6E-08 63.9 10.7 95 299-406 62-156 (394)
211 PRK15011 sugar efflux transpor 97.1 0.023 5E-07 57.2 17.0 90 345-450 104-195 (393)
212 PRK15075 citrate-proton sympor 97.1 0.011 2.4E-07 60.4 14.7 108 279-406 70-177 (434)
213 TIGR00926 2A1704 Peptide:H+ sy 97.1 0.015 3.2E-07 62.4 15.5 253 31-331 82-344 (654)
214 PRK09528 lacY galactoside perm 97.0 0.00073 1.6E-08 68.7 4.7 86 30-121 314-400 (420)
215 PF06609 TRI12: Fungal trichot 97.0 0.018 3.8E-07 60.7 14.8 136 263-447 80-215 (599)
216 PRK11128 putative 3-phenylprop 97.0 0.0089 1.9E-07 59.9 12.3 61 345-407 93-153 (382)
217 KOG0252 Inorganic phosphate tr 96.9 0.0038 8.3E-08 62.4 8.7 122 301-449 377-498 (538)
218 TIGR00902 2A0127 phenyl propri 96.9 0.016 3.4E-07 58.1 13.0 61 345-407 93-153 (382)
219 KOG0254 Predicted transporter 96.9 0.014 3E-07 61.1 13.0 108 264-403 92-199 (513)
220 PF00854 PTR2: POT family; In 96.7 0.016 3.5E-07 57.9 11.9 125 303-455 2-129 (372)
221 PF11700 ATG22: Vacuole efflux 96.7 0.0032 7E-08 65.0 6.2 90 28-123 377-467 (477)
222 TIGR00882 2A0105 oligosacchari 96.6 0.045 9.7E-07 55.0 14.1 79 349-446 102-180 (396)
223 PRK11462 putative transporter; 96.5 0.08 1.7E-06 54.6 15.3 61 346-406 109-170 (460)
224 KOG0569 Permease of the major 96.5 0.12 2.5E-06 53.2 16.0 103 276-403 71-173 (485)
225 COG0738 FucP Fucose permease [ 96.4 0.12 2.5E-06 51.3 15.0 91 299-407 75-165 (422)
226 COG2223 NarK Nitrate/nitrite t 96.4 0.054 1.2E-06 53.8 12.7 154 259-453 44-197 (417)
227 COG2807 CynX Cyanate permease 96.4 0.044 9.6E-07 53.5 11.4 112 299-448 74-185 (395)
228 KOG2504 Monocarboxylate transp 96.4 0.032 6.9E-07 58.1 11.4 134 263-445 83-217 (509)
229 PRK09669 putative symporter Ya 96.3 0.033 7.1E-07 57.1 11.5 61 345-405 108-169 (444)
230 PF02487 CLN3: CLN3 protein; 96.3 0.82 1.8E-05 45.9 20.2 62 345-406 334-395 (402)
231 PF03209 PUCC: PUCC protein; 96.2 0.38 8.2E-06 48.0 17.1 99 303-406 51-149 (403)
232 TIGR02718 sider_RhtX_FptX side 96.1 0.23 4.9E-06 49.8 16.1 86 347-448 98-183 (390)
233 KOG2615 Permease of the major 96.1 0.023 5.1E-07 55.6 7.9 83 303-407 99-181 (451)
234 PF13347 MFS_2: MFS/sugar tran 95.9 0.054 1.2E-06 55.2 10.2 125 305-451 75-200 (428)
235 KOG2325 Predicted transporter/ 95.7 0.15 3.3E-06 52.2 12.5 155 266-451 76-231 (488)
236 PRK10429 melibiose:sodium symp 95.6 0.3 6.5E-06 50.5 14.7 59 345-403 105-164 (473)
237 TIGR01272 gluP glucose/galacto 95.6 0.061 1.3E-06 52.4 8.9 62 345-406 9-70 (310)
238 COG3104 PTR2 Dipeptide/tripept 95.5 0.013 2.8E-07 59.4 4.0 117 303-454 93-211 (498)
239 PF05978 UNC-93: Ion channel r 95.4 0.32 6.9E-06 42.1 11.8 62 345-406 88-149 (156)
240 KOG0255 Synaptic vesicle trans 95.2 0.29 6.2E-06 51.3 13.0 103 302-444 148-250 (521)
241 PF03825 Nuc_H_symport: Nucleo 95.0 0.035 7.7E-07 56.1 5.3 81 36-122 306-393 (400)
242 KOG4686 Predicted sugar transp 94.4 0.056 1.2E-06 51.0 4.6 76 34-115 355-433 (459)
243 PF06963 FPN1: Ferroportin1 (F 93.6 4.4 9.6E-05 41.3 16.9 62 344-405 354-415 (432)
244 PRK09848 glucuronide transport 93.5 0.079 1.7E-06 54.3 4.2 73 30-102 318-391 (448)
245 PF06813 Nodulin-like: Nodulin 93.3 1.4 2.9E-05 41.4 11.8 91 299-404 63-153 (250)
246 COG2211 MelB Na+/melibiose sym 93.2 1.9 4E-05 44.2 13.3 66 344-409 110-176 (467)
247 TIGR00769 AAA ADP/ATP carrier 93.1 6.9 0.00015 40.4 17.6 41 51-97 149-189 (472)
248 PF03092 BT1: BT1 family; Int 93.0 1.1 2.4E-05 45.8 11.7 87 303-407 60-149 (433)
249 KOG0252 Inorganic phosphate tr 93.0 0.14 3E-06 51.7 4.7 154 261-445 81-238 (538)
250 PF01770 Folate_carrier: Reduc 92.4 14 0.0003 37.4 18.7 51 345-395 339-389 (412)
251 TIGR00788 fbt folate/biopterin 92.2 0.32 6.9E-06 50.3 6.5 70 33-108 353-427 (468)
252 KOG0637 Sucrose transporter an 91.9 0.92 2E-05 45.9 9.0 167 219-404 32-201 (498)
253 PF01306 LacY_symp: LacY proto 91.8 1.2 2.6E-05 44.9 9.9 49 235-289 23-71 (412)
254 KOG3762 Predicted transporter 91.5 0.14 3.1E-06 52.5 2.9 94 30-129 458-552 (618)
255 KOG2563 Permease of the major 91.3 1.6 3.4E-05 44.2 9.9 119 263-407 81-201 (480)
256 COG0477 ProP Permeases of the 91.2 0.32 7E-06 45.4 5.0 80 29-114 92-175 (338)
257 PF01770 Folate_carrier: Reduc 90.8 17 0.00036 36.8 16.7 82 303-406 72-153 (412)
258 KOG2816 Predicted transporter 89.0 13 0.00028 38.3 14.8 87 347-450 114-200 (463)
259 TIGR00769 AAA ADP/ATP carrier 88.6 29 0.00063 35.9 17.0 58 351-408 133-191 (472)
260 PF05631 DUF791: Protein of un 88.4 3.5 7.5E-05 40.6 9.6 102 22-124 112-216 (354)
261 PF00083 Sugar_tr: Sugar (and 87.9 0.02 4.3E-07 58.6 -6.6 85 303-405 77-161 (451)
262 COG2270 Permeases of the major 87.5 0.65 1.4E-05 46.5 4.0 85 32-122 342-427 (438)
263 PF07672 MFS_Mycoplasma: Mycop 84.6 36 0.00078 32.0 14.7 60 70-129 3-67 (267)
264 PF03219 TLC: TLC ATP/ADP tran 82.3 65 0.0014 33.5 16.0 40 53-98 166-205 (491)
265 KOG3574 Acetyl-CoA transporter 76.3 90 0.002 31.4 16.6 58 350-407 373-430 (510)
266 PF02487 CLN3: CLN3 protein; 74.6 18 0.00039 36.5 8.9 111 299-450 86-196 (402)
267 KOG3574 Acetyl-CoA transporter 72.8 76 0.0016 31.9 12.3 54 352-405 139-192 (510)
268 KOG3098 Uncharacterized conser 72.7 34 0.00074 35.2 10.5 63 345-407 101-163 (461)
269 KOG4332 Predicted sugar transp 72.4 92 0.002 29.8 13.1 46 348-393 346-391 (454)
270 COG0477 ProP Permeases of the 70.8 64 0.0014 29.5 11.6 62 345-406 93-156 (338)
271 TIGR00939 2a57 Equilibrative N 69.5 59 0.0013 33.3 11.6 52 345-401 105-156 (437)
272 PF05978 UNC-93: Ion channel r 67.2 6.3 0.00014 34.1 3.4 58 30-93 88-145 (156)
273 KOG4332 Predicted sugar transp 64.6 8.1 0.00017 36.6 3.7 89 25-119 338-426 (454)
274 PRK07331 cobalt transport prot 62.0 1.6E+02 0.0035 28.7 14.7 31 349-379 189-220 (322)
275 PF06813 Nodulin-like: Nodulin 60.6 94 0.002 29.1 10.2 85 30-121 95-179 (250)
276 KOG3810 Micronutrient transpor 58.9 2E+02 0.0043 28.7 14.3 100 345-454 325-426 (433)
277 PF03219 TLC: TLC ATP/ADP tran 56.6 20 0.00043 37.3 5.3 65 40-109 291-355 (491)
278 COG3202 ATP/ADP translocase [E 56.3 2.5E+02 0.0055 29.1 14.8 40 54-99 171-210 (509)
279 KOG1237 H+/oligopeptide sympor 54.1 21 0.00045 37.9 5.1 65 26-96 453-517 (571)
280 PF01891 CbiM: Cobalt uptake s 50.5 1.4E+02 0.003 26.9 9.3 33 345-377 172-204 (205)
281 PRK03612 spermidine synthase; 48.2 2.5E+02 0.0055 29.5 12.0 53 353-406 117-169 (521)
282 TIGR02230 ATPase_gene1 F0F1-AT 48.1 62 0.0013 25.6 5.6 30 75-104 45-74 (100)
283 TIGR00939 2a57 Equilibrative N 46.4 3.4E+02 0.0074 27.7 20.7 61 345-405 371-431 (437)
284 PRK03612 spermidine synthase; 44.5 48 0.001 34.8 6.0 78 35-119 114-193 (521)
285 PF06963 FPN1: Ferroportin1 (F 41.5 3E+02 0.0066 28.1 11.1 27 261-287 38-64 (432)
286 TIGR00123 cbiM cobalamin biosy 40.2 2.4E+02 0.0051 25.8 9.1 100 268-379 109-212 (214)
287 PRK08319 cobalt transport prot 39.8 1.9E+02 0.0041 26.6 8.5 31 350-380 183-213 (224)
288 PRK11909 cobalt transport prot 36.9 3E+02 0.0065 25.4 9.3 35 346-380 183-218 (230)
289 PF05631 DUF791: Protein of un 36.5 4.4E+02 0.0095 26.2 17.1 61 345-405 120-186 (354)
290 PF06645 SPC12: Microsomal sig 36.1 63 0.0014 24.1 3.9 45 74-121 9-53 (76)
291 PF13000 Acatn: Acetyl-coenzym 30.6 83 0.0018 32.7 4.9 65 343-407 401-466 (544)
292 KOG0637 Sucrose transporter an 29.1 53 0.0011 33.7 3.2 63 29-96 140-202 (498)
293 PF13000 Acatn: Acetyl-coenzym 29.0 6.2E+02 0.013 26.6 10.7 42 365-406 137-178 (544)
294 PF06779 DUF1228: Protein of u 28.7 1.1E+02 0.0025 23.3 4.3 68 41-117 4-71 (85)
295 KOG1479 Nucleoside transporter 28.1 2.8E+02 0.0061 28.0 8.1 59 345-403 342-400 (406)
296 PF12832 MFS_1_like: MFS_1 lik 26.2 1.5E+02 0.0032 22.0 4.5 21 263-283 37-57 (77)
297 KOG4112 Signal peptidase subun 25.5 1.1E+02 0.0023 23.8 3.5 43 74-119 24-66 (101)
298 PF01733 Nucleoside_tran: Nucl 24.7 22 0.00047 34.5 -0.4 59 29-93 246-304 (309)
299 PF12273 RCR: Chitin synthesis 24.1 35 0.00077 28.3 0.8 16 103-118 1-16 (130)
300 KOG0253 Synaptic vesicle trans 23.3 3.5E+02 0.0076 27.4 7.4 60 344-405 164-223 (528)
301 PF02554 CstA: Carbon starvati 21.9 8.1E+02 0.018 24.5 13.7 41 71-115 54-95 (376)
302 COG3619 Predicted membrane pro 20.5 6.8E+02 0.015 23.1 13.2 26 431-456 200-225 (226)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-47 Score=393.65 Aligned_cols=442 Identities=52% Similarity=0.891 Sum_probs=391.0
Q ss_pred EEeecccCCCCCCCc----CCCCCCCCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHH
Q 012670 4 LTLSASIPALKPAEC----VGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFY 79 (458)
Q Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~ 79 (458)
+++++.+|.|+|.+| .++.|+.++......++.++.++++|.|+.+|+..++.+|||++.++++++++.+.|.|+|
T Consensus 121 lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~y 200 (571)
T KOG1237|consen 121 LTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFY 200 (571)
T ss_pred HHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHH
Confidence 577899999999886 8889999999999999999999999999999999999999999766666667889999999
Q ss_pred HHHHHHHHHHhHhhhhccccccchhhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCc
Q 012670 80 FSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDS 159 (458)
Q Consensus 80 ~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (458)
+..|+|..++-.+..|++++.||.+.|.++++.+++++++|+.+.+.|++.+|.++|...+.+++..+.+++....+.+.
T Consensus 201 f~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~ 280 (571)
T KOG1237|consen 201 FSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDP 280 (571)
T ss_pred HHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877665543
Q ss_pred chhhhccchhhhccCCcccccCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012670 160 TLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYA 239 (458)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 239 (458)
+...+ ...+....++.++++++|.+.+.......++...++|+.++.+++||.|..++.++++...++++..+.
T Consensus 281 ~~~~~------~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~a 354 (571)
T KOG1237|consen 281 EELYY------DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYA 354 (571)
T ss_pred hhccc------cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 32200 001112233456788999987754433233344678999999999999999999999999999999999
Q ss_pred hcchhHHHHHHhhcCCCcC-cccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHH
Q 012670 240 QMSTLFVEQGMVMDTSIGS-FTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSA 318 (458)
Q Consensus 240 ~~~s~~~~~~~~~~~~~~~-~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~ 318 (458)
|+.+.++.|+.+||+..++ +.+|++.++.+..+.+.+..|+.+++..|+.+|..++++..+.+.|+.+|+++..+++..
T Consensus 355 q~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~ 434 (571)
T KOG1237|consen 355 QMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAV 434 (571)
T ss_pred hhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHH
Confidence 9999999999999999987 999999999999999999999999999999999988766789999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHh
Q 012670 319 AAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLS 398 (458)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig 398 (458)
.+..+..|++.+.+ +....+++|++|++++|+++|+||++..++.+|+.++++|++||+..+++|.+..++|+.++
T Consensus 435 aa~vE~krl~~~~~----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~ls 510 (571)
T KOG1237|consen 435 AGIVEAKRLKTAVS----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLS 510 (571)
T ss_pred HHHHHHHHhhhhhh----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887655 11224579999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhhhhccCCCcCCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 012670 399 SFILTVVTYFTTAGGKTGWIP-DNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457 (458)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~~~ 457 (458)
..++.++...+.. ..+|++ +++|.+.++++|++++.+..+..+.+.+..++|++++.
T Consensus 511 s~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~ 568 (571)
T KOG1237|consen 511 SVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDD 568 (571)
T ss_pred HHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccc
Confidence 9999988766532 347999 99999999999999999999999999999999987653
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=312.46 Aligned_cols=370 Identities=22% Similarity=0.317 Sum_probs=278.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+...++++++++++|+|++|||.+++++|+|+++|+ ||+.+|+++|++.|+|++++|++++++++++||++.|.+
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4688999999999999999999999999999999886 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecC--CCCCchh------hHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCccccc
Q 012670 109 PALFMGFAIASFFSGTSLYRFQR--PGGSPIT------RMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEH 180 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (458)
+++.+.+++++++++++.+...+ ++.+++. ...+........ + +.. +-.
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~-------------~l~ 247 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAA-----L-----LTL-------------LLN 247 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHH-----H-----HHH-------------HHH
Confidence 99999999999999998776532 2222221 011111111100 0 000 000
Q ss_pred CCccchhhhhhcc-ccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HhhcCCCcC
Q 012670 181 SDELRCLDKAAVV-SDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQG-MVMDTSIGS 258 (458)
Q Consensus 181 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~ 258 (458)
.+++++....... .......+.. . .++.. +|+|+....++++...++||+.++|+.+.+..++ .+.|++..|
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~~--~---~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g 321 (498)
T COG3104 248 QNTFSGVLLVISILIAIIYFAEAF--R---SPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFG 321 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--c---cCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccc
Confidence 0001111000000 0000000000 0 02223 7899999999999999999999999999887776 456677566
Q ss_pred cccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 012670 259 FTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQ 338 (458)
Q Consensus 259 ~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
+++|++++|++|++.++++.|+++++++|+.++. + +++...|+++|+.+++.+++.+.....+. .
T Consensus 322 ~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~---~ps~~~KFalGl~l~g~~fl~l~~~~~~~-----------~ 386 (498)
T COG3104 322 FEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-K---QPSTPIKFALGLILAGLGFLILLLAGIWF-----------G 386 (498)
T ss_pred eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-C---CCCcchHHHHHHHHHHHHHHHHHHHHHhh-----------c
Confidence 9999999999999999999999999999887664 2 38999999999999999999998874431 1
Q ss_pred CCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCC
Q 012670 339 NVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWI 418 (458)
Q Consensus 339 ~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~ 418 (458)
+++...|++|++++|+++++||.+++|.+++.+++.+|+++++.+++.|++.++.|+.++..+.+.-.. +.
T Consensus 387 ~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~-------- 457 (498)
T COG3104 387 GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD-------- 457 (498)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc--------
Confidence 113457999999999999999999999999999999999999999999999999999999888773221 00
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 012670 419 PDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 456 (458)
Q Consensus 419 ~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~~ 456 (458)
+..+.......|+.+++++++..+.++...++.+|..
T Consensus 458 -~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~ 494 (498)
T COG3104 458 -PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMM 494 (498)
T ss_pred -hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 0111233456789999999999988888887776643
No 3
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=5.7e-32 Score=275.57 Aligned_cols=377 Identities=15% Similarity=0.152 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHH
Q 012670 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPAL 111 (458)
Q Consensus 32 ~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i 111 (458)
..+++++.++++|.|.++|+.+++++|+||++++ +|+++++++|...|+|+.++|.++|++.+++|||+.|.++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 4466778888899999999999999999988752 499999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcceeecCC-CCCchhh--HHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 112 FMGFAIASFFSGTSLYRFQRP-GGSPITR--MCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 112 ~~~l~~ii~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++++++++++.++.+.+... ++++..+ .............. ....+... .+. + .+.+
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----------~~~--~--~~~~ 237 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLV----ATPALITV-----------LFW--K--EWSV 237 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHH----HHHHHHHH-----------HHH--H--HHHH
Confidence 898988888877766544211 1122211 00000000000000 00000000 000 0 0000
Q ss_pred hhhc---cccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HhhcCCCcCcccCcC
Q 012670 189 KAAV---VSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQG-MVMDTSIGSFTIPPA 264 (458)
Q Consensus 189 ~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~~ 264 (458)
.... ....... .+...+....+|+|++..++.++...++||+.|+|..+.+...+ +++|+++.|+++|++
T Consensus 238 ~~~~~~~~~~~~~~------~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~ 311 (493)
T PRK15462 238 YALIVATIIGLGVL------AKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTA 311 (493)
T ss_pred HHHHHHHHHHHHHH------HHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHH
Confidence 0000 0000000 00000112346788899999999999999999999998766555 678999899999999
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012670 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
|+|++|++.+++++|++.+++.++.+| +++++...|+.+|+++.++|++.+.+..... +++ ..+
T Consensus 312 ~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~----~~~--------~~~ 375 (493)
T PRK15462 312 MFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKFALGLGLMSAGFCILTLSARWS----AMY--------GHS 375 (493)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc----CCC--------CCc
Confidence 999999999999999999966554332 2247899999999999999999887765321 111 137
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHH-HHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTT-ALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~-~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
|.+|++..++++++||.+.+|.+++++.+.+|++++|+++|+|++.. ++|+.+++.+.+.......+++ .-. .-.
T Consensus 376 s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~--~~~--~~~ 451 (493)
T PRK15462 376 SLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDAS--GAI--NYS 451 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcc--ccc--cch
Confidence 89999999999999999999999999999999999999999999954 8999999888886532110000 000 001
Q ss_pred CchhHHHHHHHHHHHHHH-HHHHH-HhhhccccccC
Q 012670 424 KGHLDYFFWLLAGLSIFN-MLLYV-VCAKKYKQKKA 457 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~-~v~~~-~~~~~~~~~~~ 457 (458)
...+..+|..++.++++. .++++ .+.+.+|.|+|
T Consensus 452 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
T PRK15462 452 INAYIEVFDQITWGALACVGVVLMIWLYQALKFRNR 487 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 124667788888877766 55444 34444444443
No 4
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=1.1e-30 Score=269.36 Aligned_cols=372 Identities=19% Similarity=0.218 Sum_probs=256.2
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHH
Q 012670 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPAL 111 (458)
Q Consensus 32 ~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i 111 (458)
..++++++++++|.|+++|+..++++|+||++++ ||+++++++|++.|+|+++||.++|++.+++|||++|+++++
T Consensus 106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 3466899999999999999999999999988752 378899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCcceeecC--CCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchh--
Q 012670 112 FMGFAIASFFSGTSLYRFQR--PGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCL-- 187 (458)
Q Consensus 112 ~~~l~~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 187 (458)
.++++++.+.+.++.+++.+ |++++ .|..+.............. ..... ++.....+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~l~~~~~~~~~~~-----~~~~~------------~~~~~~~~~~~ 243 (489)
T PRK10207 182 GLIIALLVYFACRGMVKDIGSEPDHKP-MSFSKLLLVLLGSVVMIFV-----CAWLM------------HNVEVANLVLI 243 (489)
T ss_pred HHHHHHHHHHHcchhhcccCCCCCccc-hhhhhHHHHHHHHHHHHHH-----HHHHH------------hhhhHHHHHHH
Confidence 88877777777766654432 22222 2333322111100000000 00000 000000000
Q ss_pred hhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH-hhcCCCcCcccCcCcc
Q 012670 188 DKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGM-VMDTSIGSFTIPPASL 266 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~l 266 (458)
....+...... ++..+.++ .++++.+....++...+++|..+.|..+.+..+.. +++++..|+.++++++
T Consensus 244 ~~~~i~~~~f~--------~~~~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~ 314 (489)
T PRK10207 244 VLSIVVTIIFF--------REAFKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSF 314 (489)
T ss_pred HHHHHHHHHHH--------HHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHH
Confidence 00000000000 00001122 33555556666777899999999999877666554 5677667889999999
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012670 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
+++|++.++++.|+.+++..+ +++|+.++++..|+.+|+++.++|++.+....... . +. +..++.
T Consensus 315 ~~~n~~~iii~~pl~~~l~~r----l~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~------~~--~~~~s~ 379 (489)
T PRK10207 315 QALNPFWVVVASPILAGIYTH----LGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---A------DA--QGLTSP 379 (489)
T ss_pred HhHhHHHHHHHHHHHHHHHHH----HhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---c------CC--CCccCH
Confidence 999999999999999885444 44344348999999999999999987665432110 0 00 113578
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012670 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
||+++.+++.|+||++.+|++++++++.+|++++|.++|+|++.+++|+.+|..+.+.+....+ ..++. ...+.
T Consensus 380 ~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~--~~~~~----~~~~~ 453 (489)
T PRK10207 380 WFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN--ITDPL----ETLPV 453 (489)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccch----hhhhh
Confidence 9999999999999999999999999999999999999999999999999999998876531100 00000 00124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012670 427 LDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
+.++|..+++++++..++++++.++++|.
T Consensus 454 ~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 454 YTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999998888888877777653
No 5
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.98 E-value=6.7e-30 Score=263.27 Aligned_cols=360 Identities=19% Similarity=0.244 Sum_probs=257.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++++++.|+|.|+++|+..++++|+++++++ ++|+++++++|++.|+|.++||+++|++.+++|||+.|+++
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 456778899999999999999999999999987652 14899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhH----HHHH-------HHHHHhhccccCCCcchhhhccchhhhccCCccc
Q 012670 110 ALFMGFAIASFFSGTSLYRFQRPGGSPITRM----CQVL-------VASFRKWNLEVPNDSTLLYETQDKASAIEGSRKI 178 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (458)
++.++++.+++++.++.+++.++++++..+. .+.. ................
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 239 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIA------------------ 239 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHH------------------
Confidence 9888888777777776665433322221110 0000 0000000000000000
Q ss_pred ccCCccchhh-hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-HHhhcCCC
Q 012670 179 EHSDELRCLD-KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQ-GMVMDTSI 256 (458)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~ 256 (458)
+...... .....+..... ..+ +.++ +++++..+.++++...+++|+.|+|..+.+..+ ..++|++.
T Consensus 240 ---~~~~~~~~~~~~~~~~~~~----~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~ 307 (475)
T TIGR00924 240 ---NILLMTVTLAVIIFFFRLA----FKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEM 307 (475)
T ss_pred ---HHHHHHHHHHHHHHHHHHH----Hhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence 0000000 00000000000 000 1122 234445567888899999999999999876544 45678888
Q ss_pred cCcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012670 257 GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELV 336 (458)
Q Consensus 257 ~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 336 (458)
+++++|+++++++|++.+++++|+.++++.++.+| .++++...|+.+|+++.++++..+.+.... .++
T Consensus 308 ~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~---- 375 (475)
T TIGR00924 308 LGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDPTTPLKFTLGMLFCGASFLTFAASIWF----ADA---- 375 (475)
T ss_pred cceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC----
Confidence 88999999999999999999999999765554443 222677889999999999999988765321 111
Q ss_pred CCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcC
Q 012670 337 DQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTG 416 (458)
Q Consensus 337 ~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~ 416 (458)
..++|++|+++++++.++||.+..|..++++++.+|+++||+++|++.+...+|+.+++.+......
T Consensus 376 ----~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~--------- 442 (475)
T TIGR00924 376 ----GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV--------- 442 (475)
T ss_pred ----CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 1247999999999999999999999999999999999999999999999999999999998875531
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012670 417 WIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 417 ~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
..+...+|..+++++++..++++++.++.+|
T Consensus 443 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 473 (475)
T TIGR00924 443 -------PQGVTGVFGKIGLVTLLVGVVMALMVPWLNR 473 (475)
T ss_pred -------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1224567888888888888888888877765
No 6
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.97 E-value=2.8e-29 Score=260.10 Aligned_cols=369 Identities=18% Similarity=0.253 Sum_probs=255.3
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHH
Q 012670 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPA 110 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~ 110 (458)
...+++++++.|+|.|.+.|+..++++|+||++++ +|+++++++|++.|+|..+||+++|++.+++|||+.|++++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 45677889999999999999999999999987652 36779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcceeec--CCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 111 LFMGFAIASFFSGTSLYRFQ--RPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 111 i~~~l~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
+.++++++.+++.++.+++. +|++++. |..+....+.....+..... ..+.+. . .......+.
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~--------~--~~~~~~~~~ 252 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPI-NYRKLLLTIVGVVALIAIAT----WLLHNQ--------E--IARMALGVV 252 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCcccc-chhhHHHHHHHHHHHHHHHH----HHHhcc--------h--HHHHHHHHH
Confidence 88888887776666555443 2222222 22222111111000000000 000000 0 000000000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH-hhcCCCcCcccCcCccc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGM-VMDTSIGSFTIPPASLS 267 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~l~ 267 (458)
...... ... ...++.++ +|+++....+.++...++||+.+.|.++.+..+.. ++|++..|+.+++++++
T Consensus 253 ~~~~~~-~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~ 322 (500)
T PRK09584 253 ALGIVV-IFG--------KEAFAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQ 322 (500)
T ss_pred HHHHHH-HHH--------HHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHH
Confidence 000000 000 00001122 34555666677778899999999999998887764 46667778899999999
Q ss_pred cchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhH
Q 012670 268 SFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIF 347 (458)
Q Consensus 268 ~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 347 (458)
++|++.+++++|+.+++ ++|+.+| .++.+|+.+|+++.++|++.+.....+ +++ +..+|.+
T Consensus 323 s~n~i~iil~~p~~~~~----~~~l~~r---~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~--------~~~vs~~ 383 (500)
T PRK09584 323 ALNPFWIMIGSPILAAI----YNKMGDR---LPMPHKFAIGMVLCSGAFLVLPLGAKF----AND--------AGIVSVN 383 (500)
T ss_pred HHhHHHHHHHHHHHHHH----HHHhCcC---CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC--------CCccCHH
Confidence 99999999999999884 4444444 678899999999999999998776422 111 1246788
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC-CCch
Q 012670 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL-NKGH 426 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
|+++++++.|+||++++|.+++++++.+|+++||+++|+|.+..++|+.+++.+.+.+.... -..+.. ..+.
T Consensus 384 ~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~-------~~~~~~~~~~~ 456 (500)
T PRK09584 384 WLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPD-------NVTDPLMSLEV 456 (500)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------ccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999988887543100 000011 1123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012670 427 LDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
+...|..+++++++.++++++..++.+|
T Consensus 457 ~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 457 YGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888898888777777777766654
No 7
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.96 E-value=2.6e-30 Score=258.54 Aligned_cols=339 Identities=40% Similarity=0.661 Sum_probs=220.6
Q ss_pred CCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhh
Q 012670 26 ATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLG 105 (458)
Q Consensus 26 ~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~ 105 (458)
+...+.+.+++++.++++|.|++|||..++++|||+++++ .+|+++|+|||+++|+|+++++.+.+|+++++||.+.
T Consensus 28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~ 104 (372)
T PF00854_consen 28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG 104 (372)
T ss_dssp ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence 3455788999999999999999999999999999998742 3599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCcceeec-CCCCCchhh-HHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCc
Q 012670 106 FGIPALFMGFAIASFFSGTSLYRFQ-RPGGSPITR-MCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDE 183 (458)
Q Consensus 106 F~i~~i~~~l~~ii~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (458)
|+++++.+++++++++..++.|++. +|.++++.+ .........+++....+ .............. .......
T Consensus 105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~ 178 (372)
T PF00854_consen 105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVP-KGSSWLDWALFQYS-----ERSIFGI 178 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH--HHHHHHHHHHHHHC-----CCCCCCC
T ss_pred hhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccc-cchHHHHHhhhhhh-----hhhhhhh
Confidence 9999999999999999999988887 666677766 33334444444433332 11111110000000 0000000
Q ss_pred cchhhhhhccccccccCCCCCCCcc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcC-ccc
Q 012670 184 LRCLDKAAVVSDAEIKSGDFSNPWI-LCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGS-FTI 261 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~ 261 (458)
....+.......... .|. .++++++++.|.+.+.++.+...+.++..+.+..+....+...+|+...+ +.+
T Consensus 179 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (372)
T PF00854_consen 179 IVFIRAAVIFFPEIF-------FWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGI 251 (372)
T ss_dssp CCHHHHHHHHCCCHH-------HHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-----
T ss_pred hhhccchhhhhhhhh-------hcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhcccccccccccccc
Confidence 001110000000000 011 02335566667777777777667777777777666666776777777777 899
Q ss_pred CcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 012670 262 PPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVS 341 (458)
Q Consensus 262 ~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
|+++++++|++.++++.|+.+++++|+.++ +++ +++..|+.+|.++..++++.....+..|....+++|
T Consensus 252 p~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~------- 320 (372)
T PF00854_consen 252 PPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---PSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG------- 320 (372)
T ss_dssp -SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T-------
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---chhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-------
Confidence 999999999999999999999999998873 233 899999999999999999998888775544433333
Q ss_pred ccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHH
Q 012670 342 VPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTA 392 (458)
Q Consensus 342 ~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ 392 (458)
..+.+|++..+++.+++|.+..+.+.+.+++.+|++..+.++|+|+....
T Consensus 321 -~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~ 370 (372)
T PF00854_consen 321 -KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSA 370 (372)
T ss_dssp -T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH-
T ss_pred -CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhc
Confidence 34558888999999999999999999988888888888888888777654
No 8
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.96 E-value=2.1e-27 Score=249.86 Aligned_cols=360 Identities=33% Similarity=0.577 Sum_probs=286.0
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc-------cch
Q 012670 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA-------GWG 103 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~-------gw~ 103 (458)
....++++.++++|.|+++||..++.+|+|+++++ ++|.++|.|+|+++|+|+++++++.+++.+++ ||+
T Consensus 85 ~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~ 161 (654)
T TIGR00926 85 DLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYP 161 (654)
T ss_pred HHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchH
Confidence 45578999999999999999999999999986542 34899999999999999999999999998554 699
Q ss_pred hhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCc
Q 012670 104 LGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDE 183 (458)
Q Consensus 104 ~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (458)
++|.+++++++++++++...++.+++.+|+++++.++.+++..+.+++..... ...+
T Consensus 162 ~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~-----------------------~~~~ 218 (654)
T TIGR00926 162 LAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRS-----------------------EHWP 218 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCC-----------------------cccc
Confidence 99999999999999999999988877777777777777777666654321110 0011
Q ss_pred cchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCc
Q 012670 184 LRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPP 263 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 263 (458)
.+|.|.+... ...++++++|+++++++++...++||..+.|+.+.+..|+..+++.++++.+++
T Consensus 219 ~~~ld~a~~~----------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~ 282 (654)
T TIGR00926 219 LHWLDYAKDK----------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQP 282 (654)
T ss_pred hhHHHHhccc----------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCH
Confidence 3455554211 123567889999999999999999999999999999999988888888889999
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLR--------------- 328 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~--------------- 328 (458)
++++.+|++.++++.|++++.++|..+|++.+ .++..|+.+|+++++++++.+...+..+++
T Consensus 283 ~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~ 359 (654)
T TIGR00926 283 DQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQV 359 (654)
T ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEE
Confidence 99999999999999999998888888775444 789999999999999999999888877650
Q ss_pred ----------------------------H------------Hhh--h-----------------------------c---
Q 012670 329 ----------------------------L------------ARE--L-----------------------------E--- 334 (458)
Q Consensus 329 ----------------------------~------------~~~--~-----------------------------~--- 334 (458)
. .+. + +
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (654)
T TIGR00926 360 LNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISY 439 (654)
T ss_pred ecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCceE
Confidence 0 000 0 0
Q ss_pred -c------------------------------------------------------------------------------
Q 012670 335 -L------------------------------------------------------------------------------ 335 (458)
Q Consensus 335 -~------------------------------------------------------------------------------ 335 (458)
+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (654)
T TIGR00926 440 VLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRID 519 (654)
T ss_pred EEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeeccccc
Confidence 0
Q ss_pred ---------------------cCCC--------------CCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhH
Q 012670 336 ---------------------VDQN--------------VSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMR 380 (458)
Q Consensus 336 ---------------------~~~~--------------~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~ 380 (458)
++++ ..+++|++|++++|++.++||++.+.+.+++.++++|++||
T Consensus 520 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mk 599 (654)
T TIGR00926 520 NAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMK 599 (654)
T ss_pred ccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHH
Confidence 0000 02336789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012670 381 SLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 381 g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
...+++|.+..++|+.+...+...=.. ..-...|..++.+.++.++++.++.+.|
T Consensus 600 s~~~a~~~~~~~~g~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 600 SVLQALWLLTVAIGNLIVVVIAEFENF-----------------SVQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-----------------hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999988776553110 1123457777778777777777777654
No 9
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.70 E-value=1.2e-15 Score=154.32 Aligned_cols=295 Identities=13% Similarity=0.105 Sum_probs=177.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|++.+...|...+++.|.+|+++ |++++++++...++|..+||.++|++. ++|||+.|++.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 56778899999999999999999999999998776 999999999999999999999999998 68999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhh
Q 012670 110 ALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDK 189 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (458)
++..++..+...+..++. ++.+.. .+.. + ++..
T Consensus 171 ~~~~~~~~i~~~~~~~~~---~~~~~~-~~~~----------------------------------------~--~~~~- 203 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAY---KLSTVR-TPVR----------------------------------------E--GMTR- 203 (400)
T ss_pred HHHHHHHHHHHHHhCCcc---cccccc-hhhH----------------------------------------H--HHHH-
Confidence 876665544433322211 100000 0000 0 0000
Q ss_pred hhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccccc
Q 012670 190 AAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSF 269 (458)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~l 269 (458)
...+.+ +.... .....++..+.+....+..... + . ++.....+.+..+
T Consensus 204 ------------------------~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~p~~~~--~-~-~~~~~~~g~l~~~ 251 (400)
T PRK11646 204 ------------------------VLRDKR-FVTYV---LTLTGYYMLAVQVMLMLPIMVN--D-I-AGSPSAVKWMYAI 251 (400)
T ss_pred ------------------------HHcCch-HHHHH---HHHHHHHHHHHHHHHhhhhhHH--h-h-cCCchHHHHHHHH
Confidence 000111 11111 1111122222222111111111 1 1 0011112222233
Q ss_pred hhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHH
Q 012670 270 DVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQ 349 (458)
Q Consensus 270 n~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 349 (458)
+....+.......+ ..+| | .+..+++..+.++.++++..+...+ +.++.
T Consensus 252 ~~~~~~~~~~~~~~----~~~~---r---~~~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~ 300 (400)
T PRK11646 252 EACLSLTLLYPIAR----WSEK---R---FRLEHRLMAGLLIMSLSMFPIGMVS---------------------NLQQL 300 (400)
T ss_pred HHHHHHHHHHHHHH----HHHH---h---cchhHHHHHHHHHHHHHHHHHHHhh---------------------hHHHH
Confidence 33322222222222 2222 1 3334556777777777776665432 34445
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHH
Q 012670 350 IPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDY 429 (458)
Q Consensus 350 i~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (458)
+....+.++|+++..|...+.+.+.+|++.+|..+|++++..++|..+|+.+.+.+.+.... .+....
T Consensus 301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~------------~~~~~~ 368 (400)
T PRK11646 301 FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA------------LNQPEL 368 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh------------cCCcch
Confidence 55667889999999999999999999999999999999999999999999999988654210 011234
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 012670 430 FFWLLAGLSIFNMLLYVVCAKKYK 453 (458)
Q Consensus 430 ~f~~~a~i~~~~~v~~~~~~~~~~ 453 (458)
.|...+++++++.+.+....|+.|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~ 392 (400)
T PRK11646 369 PWMMLGIIGLITLLALYWQFSQKR 392 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhch
Confidence 566666776766666555444443
No 10
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.69 E-value=4.9e-15 Score=150.51 Aligned_cols=299 Identities=10% Similarity=-0.002 Sum_probs=177.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+...|...+++.|.+++++ |+++.++++...++|..+||.++|++.+..||+|.|++
T Consensus 108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~ 181 (417)
T PRK10489 108 PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL 181 (417)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 356777888999999999999999999999998776 89999999999999999999999999988899999998
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..+++.+..+...+ .++++++..+ .. + +..+
T Consensus 182 ~~~~~~~~~~~~~~l~~----~~~~~~~~~~-------------------------------------~~---~--~~~~ 215 (417)
T PRK10489 182 AAAGTFITLLPLLRLPA----LPPPPQPREH-------------------------------------PL---R--SLLA 215 (417)
T ss_pred HHHHHHHHHHHHHhCCC----CCCCCccccc-------------------------------------ch---H--HHHH
Confidence 88766665554433221 1111100000 00 0 0000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
.. +.+.+.+.+.... + .... +.........+... .....+.-....+.+..
T Consensus 216 ~~----------------------~~~~~~~~~~~~~-~--~~~~-~~~~~~~~~~~p~~---~~~~~g~~~~~~g~~~~ 266 (417)
T PRK10489 216 GF----------------------RFLLASPVVGGIA-L--LGGL-LTMASAVRVLYPAL---ADEVWQMGAAQIGLLYA 266 (417)
T ss_pred HH----------------------HHHHcChHHHHHH-H--HHHH-HHHHHhHHHhhHHH---HHhccCCChhHhHHHHH
Confidence 00 0000011111111 1 1111 11111111111111 11111100111223333
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012670 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
...+..++...+..+ +.+| .++.+.+..+.++.+++++.+... .+++.
T Consensus 267 ~~~~g~~ig~~~~~~----l~~~-------~~~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~ 314 (417)
T PRK10489 267 AVPLGAALGALTSGW----LAHS-------ARPGLLMLLSTLGSFLAVGLFGLM---------------------PMWIL 314 (417)
T ss_pred HHHHHHHHHHHHHHH----hhhc-------cCcchHHHHHHHHHHHHHHHHHcc---------------------chHHH
Confidence 333334444444443 3332 222334566666666676655432 14455
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhH
Q 012670 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLD 428 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
.....++.+++.+...+...+++.+..|++.||+.+|+++....+|..+|+.+.+.+.+.. +..
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~----------------g~~ 378 (417)
T PRK10489 315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM----------------TPV 378 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh----------------chh
Confidence 5667788889888888888899999999999999999999999999999999999876422 123
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccc
Q 012670 429 YFFWLLAGLSIFNMLLYVVCAKKYKQKK 456 (458)
Q Consensus 429 ~~f~~~a~i~~~~~v~~~~~~~~~~~~~ 456 (458)
..+...+++.++..++.....+++|+++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (417)
T PRK10489 379 ASASASGFGLLIIGVLLLLVLGELRRFR 406 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4455556555555555555555555544
No 11
>PRK03545 putative arabinose transporter; Provisional
Probab=99.68 E-value=6e-15 Score=148.54 Aligned_cols=285 Identities=11% Similarity=0.046 Sum_probs=174.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+...|...+++.|++|++| |+++++++..+.++|..+||.+++++.+++|||+.|++
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 168 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA 168 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence 478888999999999999999999999999999876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++..+..+...++ +|++++ .+ +-+
T Consensus 169 ~~~~~~l~~~~~~~~~~~----~~~~~~-~~----------------------------------------------~~~ 197 (390)
T PRK03545 169 IGGGALITLLLLIKLLPL----LPSEHS-GS----------------------------------------------LKS 197 (390)
T ss_pred HHHHHHHHHHHHHHhCCC----CCCCCc-ch----------------------------------------------HHH
Confidence 887665554443322221 111100 00 000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcc-cCcCcc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMF-PIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFT-IPPASL 266 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~l 266 (458)
. .+....+.+.... ..+......+..+ +....... +. . +.+ ...+.+
T Consensus 198 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~--~~-~-g~s~~~~~~~ 246 (390)
T PRK03545 198 L-----------------------PLLFRRPALVSLYLLTVVVVTAHFTAY----SYIEPFVQ--QV-A-GLSENFATLL 246 (390)
T ss_pred H-----------------------HHHHhCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--Hh-c-CCCccHHHHH
Confidence 0 0000001111111 1111111111111 11111111 10 0 011 111222
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012670 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
.....+..++...+..+ +.+|. . ++++..+..+.+++...+.... .+.
T Consensus 247 ~~~~~~~~~~g~~~~g~----l~dr~-------~-~~~~~~~~~~~~~~~~~l~~~~--------------------~~~ 294 (390)
T PRK03545 247 LLLFGGAGIIGSVLFSR----LGNRH-------P-SGFLLIAIALLLVCLLLLLPAA--------------------NSE 294 (390)
T ss_pred HHHHHHHHHHHHHHHHH----Hhhcc-------c-hhHHHHHHHHHHHHHHHHHHHh--------------------chH
Confidence 22233333334444433 33332 2 2345556555555554433221 245
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012670 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
+.+++..++.|++.....+...+.+.+..| +.+|.++|+++....+|..+|+.+.+.+.+. .+
T Consensus 295 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~----------------~g 357 (390)
T PRK03545 295 WHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH----------------LG 357 (390)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------cC
Confidence 566677888899988888888888888877 5789999999999999999999999987632 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 427 LDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
+...|...+.+.+++.+.+....|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 358 LSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcc
Confidence 456778888888777777665554
No 12
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.68 E-value=8.5e-17 Score=163.71 Aligned_cols=332 Identities=14% Similarity=0.190 Sum_probs=200.7
Q ss_pred EeecccCCCCCCCcCCCCCCCCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHH
Q 012670 5 TLSASIPALKPAECVGALCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINI 84 (458)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~ni 84 (458)
.+|+..++|+| ++...+...+++.|+++|++.|...|++..+.++|.|++| |++..++.+.+..+
T Consensus 111 ~~sa~~t~l~P---------~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~ 175 (466)
T KOG2532|consen 111 LISALLTLLTP---------LAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQL 175 (466)
T ss_pred HHHHHHHHHHH---------HHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHH
Confidence 45777888899 7777777788999999999999999999999999999998 99999999999999
Q ss_pred HHHHHhHhhhhcccc-ccchhhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhh
Q 012670 85 GALISSSLIVWIQDN-AGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLY 163 (458)
Q Consensus 85 G~~igp~l~g~l~~~-~gw~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (458)
|.+++-+++|++.++ +||+++||+.++..++..+++++... +.|++|+... +.++.
T Consensus 176 g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~----d~P~~h~~is-------------------~~El~ 232 (466)
T KOG2532|consen 176 GTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS----DSPSKHPNIS-------------------EKELK 232 (466)
T ss_pred HHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCC-------------------HHHHH
Confidence 999999999999999 99999999999866666666544332 3455544211 00000
Q ss_pred hccchhhhccCCcccccCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 012670 164 ETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMST 243 (458)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s 243 (458)
+ +...+....... ....|| |.+++-.++++.-+..+.-......
T Consensus 233 ~----------------------I~~~k~~~~~~~---~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~ 276 (466)
T KOG2532|consen 233 Y----------------------IEKGKSEAHVKK---KPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYL 276 (466)
T ss_pred H----------------------HHhcccccccCC---CCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 0 000000000000 001122 2222222222222211111111111
Q ss_pred hHHHHHHhhcCCCcCccc-CcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHH--HHHHHHHHHHHHHHH
Q 012670 244 LFVEQGMVMDTSIGSFTI-PPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRM--GIGLFLSVLCMSAAA 320 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~-~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~--~~G~~l~~~g~~~~~ 320 (458)
.....+.+++..+ ++++ ..+++.+++.+...+...+...+.+++.+| .-. .+..+|+ .++....++.++.++
T Consensus 277 l~~y~PtY~~~VL-~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~ 351 (466)
T KOG2532|consen 277 LLTYLPTYLKEVL-GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLA 351 (466)
T ss_pred HHHHhhHHHHHHh-CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeee
Confidence 1112222332221 1222 456677777777777766666666656554 211 3444454 555555666666655
Q ss_pred HHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhh-hhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhh
Q 012670 321 VVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTF-IGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSS 399 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~-~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~ 399 (458)
+... -+. +..+.....+++..... +..+.-..+.+| ++.+..+|+.+....++..++|
T Consensus 352 ~~~~-------------------~~~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P 410 (466)
T KOG2532|consen 352 FTSD-------------------EHR-LLAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAP 410 (466)
T ss_pred ecCC-------------------Ccc-hHHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 5421 011 22222222222222222 223333333354 8899999999999999999999
Q ss_pred HHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012670 400 FILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
.+++.+.+ . + +.......|++.+++.+++.++|.++.
T Consensus 411 ~~vg~~~~-~-----------~-t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 411 LLVGIIVT-D-----------N-TREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HheeeEeC-C-----------C-CHHHHHHHHHHHHHHHHHhchheeEee
Confidence 99998753 1 1 123457889999999999998888774
No 13
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.66 E-value=4.9e-15 Score=149.73 Aligned_cols=300 Identities=14% Similarity=0.136 Sum_probs=179.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+ ..|...+.+.|++++++ |+++++++....++|..++|.+++++.+..+||+.|++
T Consensus 105 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 177 (408)
T PRK09874 105 QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI 177 (408)
T ss_pred hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 357778889999999865 46778888999998776 99999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++..+..++..++. .++.+++... ++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------------------------------------~~~~ 210 (408)
T PRK09874 178 TASVLFLCFLVTLFCIREN--FQPVSKKEML---------------------------------------------HMRE 210 (408)
T ss_pred HHHHHHHHHHHHHHHhccC--cccccchhhh---------------------------------------------HHHH
Confidence 8876665555433322210 0111100000 0000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
... ..++.+...... .....+..........+..+..+............+.+..
T Consensus 211 ~~~----------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 265 (408)
T PRK09874 211 VVT----------------------SLKNPKLVLSLF---VTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIAS 265 (408)
T ss_pred HHH----------------------hCcCCchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 000 000001111011 1111111221111111111111111110000000111222
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012670 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
+..+..++..++..+ +.+|. .+++.+..+.++.+++++.....+ +.+.
T Consensus 266 ~~~l~~~~~~~~~g~----l~dr~-------g~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 313 (408)
T PRK09874 266 VPGVAALLSAPRLGK----LGDRI-------GPEKILITALIFSVLLLIPMSFVQ---------------------TPLQ 313 (408)
T ss_pred HHHHHHHHHHHHHHH----HHhcc-------ccchhHHHHHHHHHHHHHHHHHhc---------------------cHHH
Confidence 233333444444444 34443 333455566665555555443321 4455
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhH
Q 012670 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLD 428 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
..+..++.+++++...|...+.+.+..|++.+|..+++++....+|..+|+.+.+.+.+. .++.
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~----------------~g~~ 377 (408)
T PRK09874 314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN----------------YGFR 377 (408)
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh----------------cchh
Confidence 566778899999999999999999999999999999999999999999999999977531 1256
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc
Q 012670 429 YFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 429 ~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
..|.+.+++++++.+..+...+|.+.+
T Consensus 378 ~~f~~~~~~~l~~~~~~~~~~~~~~~~ 404 (408)
T PRK09874 378 AVFLVTAGVVLFNAVYSWNSLRRRRIP 404 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 778888888888887776666555543
No 14
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.66 E-value=4.7e-14 Score=142.37 Aligned_cols=282 Identities=11% Similarity=0.036 Sum_probs=173.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++.+++.|+|.+...|...+.+.|++++++ |+++++++..+.++|..+||.+++++.+++||++.|++.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 45678899999999999999999999999998876 999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhh
Q 012670 110 ALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDK 189 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (458)
++..++..+ +.++ .++.+++++ ++.++
T Consensus 185 ~~~~~~~~~---~~~~-~~~~~~~~~----------------------------------------------~~~~~--- 211 (399)
T PRK05122 185 MLLALLGLL---LARP-RPAVPPVKG----------------------------------------------ERLPF--- 211 (399)
T ss_pred HHHHHHHHH---HHhc-CCCCCCCCc----------------------------------------------cchhH---
Confidence 664433222 2121 111000000 00000
Q ss_pred hhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccccc
Q 012670 190 AAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSF 269 (458)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~l 269 (458)
.+..|........+.. ....+....+....... +.. .. ..+.....
T Consensus 212 -------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~---~~-~~~~~~~~ 257 (399)
T PRK05122 212 -------------------------RRVLGRVWPYGMGLAL---ASIGFGTIATFITLYYA--ARG---WD-GAALALTL 257 (399)
T ss_pred -------------------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--Hcc---cc-cchHHHHH
Confidence 0001111111111110 11111111111111111 111 10 11112222
Q ss_pred hhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHH
Q 012670 270 DVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQ 349 (458)
Q Consensus 270 n~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 349 (458)
..+..++..++..+ +.+| .++++.+..+.++.++++..+... .+.+.+
T Consensus 258 ~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~ 305 (399)
T PRK05122 258 FGVAFVGARLLFGN----LINR-------LGGLRVAIVSLLVEILGLLLLWLA---------------------PSPWMA 305 (399)
T ss_pred HHHHHHHHHHHHHH----HHHH-------hccHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHH
Confidence 23333333444444 4444 233355667777777776665543 145556
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHH
Q 012670 350 IPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDY 429 (458)
Q Consensus 350 i~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (458)
++..++.|++.+...|.....+.+..|++.||+.+|+++....+|..+++.+.+.+.+. .+++.
T Consensus 306 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----------------~g~~~ 369 (399)
T PRK05122 306 LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW----------------FGYPS 369 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------cCHHH
Confidence 67789999999999998888888999999999999999999999999988888876531 12566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 012670 430 FFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 430 ~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
.|.+.+++++++.+..++..++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 370 IFLAAALAALLGLALTWLLYRRA 392 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777766655544433
No 15
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.65 E-value=3.7e-14 Score=142.48 Aligned_cols=282 Identities=12% Similarity=0.011 Sum_probs=176.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+.+.+.+.+...|...++..+. +++ |++.++......++|.++||+++|++.+++|||+.|++
T Consensus 92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 92 HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 4678888899999999999999998887543 233 88999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.+....+.++ .+..+++ .+|+++. .+ + . ..+..++
T Consensus 164 ~~~~~~~~~~-~~~~~~~---~~~~~~~-~~------------------~------------------~--~~~~~~~-- 198 (382)
T TIGR00902 164 LTAGLAFMLI-GFLIKPT---IPPKDAI-PE------------------D------------------E--SQGDSAF-- 198 (382)
T ss_pred HHHHHHHHHH-HHHcCCC---CCCCccc-cc------------------c------------------c--cccchhH--
Confidence 7654333322 2222221 0111100 00 0 0 0000000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
......|++ ..+.....+.+....+..+....... +... .....+.+..
T Consensus 199 ------------------------~~~l~~~~~---~~~l~~~~l~~~~~~~~~~~~~~~l~--~~g~--s~~~~g~l~~ 247 (382)
T TIGR00902 199 ------------------------IALLKNPMN---LRFLAAVCLIQGAHAAYYGFSAIYWQ--AAGI--SASATGLLWG 247 (382)
T ss_pred ------------------------HHHHcChHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--HCCC--CHhHHHHHHH
Confidence 000011222 11222223333333333333222211 1111 1111223333
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012670 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
++.+..++..++.++ +.+| +++++.+.+|.++.++....+...+ +++.
T Consensus 248 ~~~~~~i~~~~~~~~----l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~ 295 (382)
T TIGR00902 248 IGVLAEIIIFAFSNK----LFQN-------CSARDLLLISAIACVGRWAIIGAIE---------------------AFPL 295 (382)
T ss_pred HHHHHHHHHHHHhHH----HHhh-------CCHHHHHHHHHHHHHHHHHHHHhHh---------------------hHHH
Confidence 344444444444444 4454 5666778889999988888776543 6677
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHH-HHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchh
Q 012670 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSL-LTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHL 427 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~-~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
++..++++++++++..+....++.+. |++.++..+++++ ...++|..+|+.+++.+.+.. +
T Consensus 296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~----------------g- 357 (382)
T TIGR00902 296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL----------------G- 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------c-
Confidence 77789999999999999999999998 9999999999986 567899999999999876421 1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012670 428 DYFFWLLAGLSIFNMLL 444 (458)
Q Consensus 428 ~~~f~~~a~i~~~~~v~ 444 (458)
...|+..+++++++.++
T Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 24577777777765443
No 16
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.65 E-value=1.5e-14 Score=144.43 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++++++.|+|.+...|...+++.|++|+++ |+++++++....++|.+++|.+++++.++.+||+.|++.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 77888999999999999999999999999998876 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 012670 110 ALFMGFAIASFF 121 (458)
Q Consensus 110 ~i~~~l~~ii~~ 121 (458)
++..++..+..+
T Consensus 155 ~~~~~~~~~~~~ 166 (399)
T TIGR00893 155 GVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHHhh
Confidence 876655554433
No 17
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.65 E-value=1.5e-14 Score=143.30 Aligned_cols=265 Identities=8% Similarity=0.033 Sum_probs=165.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++++++.|++.+...|...+++.|++++++ |+++++++....++|.++||.+++++.+..|||+.|++.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 67888999999999999999999999999998876 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCC-CCCchh-hHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchh
Q 012670 110 ALFMGFAIASFFSGTSLYRFQRP-GGSPIT-RMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCL 187 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
++..+++.+..+..+.+ ++++ ++++.. +..+ +..
T Consensus 165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------------------------------------------~~~ 200 (365)
T TIGR00900 165 AVGFAISALLIVSVRIP--ELAASEIQALSNAVLR------------------------------------------DTR 200 (365)
T ss_pred HHHHHHHHHHHHhcccc--cCCCccccccchhHHH------------------------------------------HHH
Confidence 87666555443333221 1110 000000 0000 000
Q ss_pred hhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc----chhHHHHHHhhcCCCcCcccCc
Q 012670 188 DKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQM----STLFVEQGMVMDTSIGSFTIPP 263 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~----~s~~~~~~~~~~~~~~~~~~~~ 263 (458)
+.. +...+.+.+.... .....+...+... ...+..+. .+.+ ....
T Consensus 201 ~~~----------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~ 249 (365)
T TIGR00900 201 EGI----------------------KFVLKNPLLRTLL---LLALLFNLVFAPAIVALFPYVQSKY--LGRG----STHY 249 (365)
T ss_pred hHH----------------------HHHHcCcHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHH--hCCc----hHHH
Confidence 000 0000011111111 1111122222111 11121111 1111 1112
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+.+.....+..++..++..+ +.+| ..+.+.+..+.++.++++....... +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~----l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 299 (365)
T TIGR00900 250 GWVLAAFGLGALLGALLLGL----LGRY-------FKRMALMTGAIFVIGLAILVVGLTP-------------------P 299 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHH-------hchhHHHHHHHHHHHHHHHHHHhhc-------------------h
Confidence 22333333344444444443 3344 2333445566666666665555431 1
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+...+..++.+++.+...+...+++.+..|++.||...|+++....++..+++.+.+.+.
T Consensus 300 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 300 -NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25566778899999999999999999999999999999999999999999999999988765
No 18
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.64 E-value=4.1e-14 Score=143.06 Aligned_cols=85 Identities=15% Similarity=0.288 Sum_probs=75.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+...|...+.+.|++++++ |++++++++...++|..++|.+++++.+..+||+.|++
T Consensus 101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 367788899999999999999999999999998876 99999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q 012670 109 PALFMGFAIAS 119 (458)
Q Consensus 109 ~~i~~~l~~ii 119 (458)
.++..++..+.
T Consensus 175 ~~~~~~~~~~~ 185 (406)
T PRK11551 175 GGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHH
Confidence 87655544443
No 19
>PRK12382 putative transporter; Provisional
Probab=99.64 E-value=6.1e-14 Score=141.22 Aligned_cols=278 Identities=9% Similarity=0.085 Sum_probs=171.1
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+...+++++++.|+|.+...|...+.+.|.+++++ |+++++++..+.++|..+||++++++.+++||++.+.+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 367788999999999999999999999999998876 99999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
..+..++.+ .+.++ .++.+++++. .+ ++.
T Consensus 184 ~~~~~~~~~---~~~~~-~~~~~~~~~~--------------------------------------------~~--~~~- 212 (392)
T PRK12382 184 TMVLPLLAW---AFNGT-VRKVPAHAGE--------------------------------------------RP--SLW- 212 (392)
T ss_pred HHHHHHHHH---HHHHh-ccCCCCCccc--------------------------------------------Cc--hHH-
Confidence 654332222 11111 1111100000 00 000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRM-FPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLS 267 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 267 (458)
+..|.+.+. .........+........ .+.. +... . ..+...
T Consensus 213 ---------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~-----~~~~---~-~~~~~~ 255 (392)
T PRK12382 213 ---------------------------SVVGLIWKPGLGLALQGVGFAVIGTFVS-LYFA-----SKGW---A-MAGFTL 255 (392)
T ss_pred ---------------------------HHHHHHHHhHHHHHHHHHHHhHHHHHHH-HHHH-----hcCC---c-hhHHHH
Confidence 001111110 000111111111111101 1111 1111 1 111122
Q ss_pred cchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhH
Q 012670 268 SFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIF 347 (458)
Q Consensus 268 ~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 347 (458)
....+..++..++..+ +.+|. ++++.+..+..+.++++...... .+.+
T Consensus 256 ~~~~~~~~~~~~~~g~----l~~r~-------g~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 303 (392)
T PRK12382 256 TAFGGAFVLMRVLFGW----MPDRF-------GGVKVAIVSLLVETVGLLLLWLA---------------------PTAW 303 (392)
T ss_pred HHHHHHHHHHHHHHHH----HHHhc-------CCCeehHHHHHHHHHHHHHHHHc---------------------ccHH
Confidence 2233333444455554 44443 22344566777777776655442 1445
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchh
Q 012670 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHL 427 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
+..+..++.+++++...|...+.+.+..|++.||+..|+++....+|+.+|+.+.+.+.+.. ++
T Consensus 304 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~----------------g~ 367 (392)
T PRK12382 304 VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF----------------GY 367 (392)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------Cc
Confidence 56667888999999988988899999999999999999999999999999999999775321 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 012670 428 DYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 428 ~~~f~~~a~i~~~~~v~~~~~ 448 (458)
...|.+.+++.+++.+..+..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 368 PSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 566777777777776665543
No 20
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.64 E-value=5.2e-15 Score=153.08 Aligned_cols=311 Identities=14% Similarity=0.110 Sum_probs=177.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+...+++++++.|+|.+...|...+++.|.+|+++ |++++++++...++|..+||.++|++.+++|||+.|++
T Consensus 88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 367888999999999999999999999999998876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++..+..++..++ ++++.+...|..+............... +..++.+|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~g~~l~~~~~~~~~~~~---------------------~~~~~~~~~~ 217 (485)
T TIGR00711 162 NVPIGIIVVVVAFFILPR---DKPAASENFDFLGLLLLSVGLGSLLYGL---------------------SEGPERGWFD 217 (485)
T ss_pred hhHHHHHHHHHHHHHcCC---ccccccCCCcHHHHHHHHHHHHHHHHHH---------------------hhCCCCCCCC
Confidence 887666555544333332 1122112223332222211110000000 0000001111
Q ss_pred hhhccc---------cccccCCCCCCCcccccchhhHHHHHHH--HHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCc
Q 012670 189 KAAVVS---------DAEIKSGDFSNPWILCTVTQVEELKILI--RMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIG 257 (458)
Q Consensus 189 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 257 (458)
...+.. .... .++..++++..+.+.+. ...............+......+.....+ .....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~s 289 (485)
T TIGR00711 218 SNEILILSITGLVAIIAFV-------VWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQ-VLGYT 289 (485)
T ss_pred chHHHHHHHHHHHHHHHHH-------HHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence 100000 0000 00000000001111110 01111111111222221111111111111 01110
Q ss_pred CcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 012670 258 SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVD 337 (458)
Q Consensus 258 ~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
....+.+.....+..++..++..+ +.+| .++++.+.+|.++.++++.++....
T Consensus 290 --~~~~g~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~g~~~~~~~~~~~~~~~-------------- 342 (485)
T TIGR00711 290 --ALQAGLHILPVGLAPMLSSPIAGR----MGDK-------IDPRKLVTIGLILYAVGFYWRAFTF-------------- 342 (485)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH----HHhh-------cCcHHHHHHHHHHHHHHHHHHhccC--------------
Confidence 111233334444455556666655 3444 3344566778887777777665211
Q ss_pred CCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 338 QNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 338 ~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+...+.++.+...++.++|.++..++....+.+..|++.+|.++|+.+..+.+|+.+|+.+.+.+.+
T Consensus 343 ---~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 343 ---TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1113455666778999999999998888888899999999999999999999999999999888754
No 21
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.63 E-value=1.7e-14 Score=149.92 Aligned_cols=314 Identities=11% Similarity=0.069 Sum_probs=172.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++++++.|+|.+...|...+.+.+.+++++ +|+++++++....++|..+||+++|++.++.||||.|++
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 378889999999999999999999998888875443 399999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
..+..++.+++.+...++- +++++...|..+..........+....+.. . +.....|.-
T Consensus 167 ~~~~~~~~~~l~~~~l~~~---~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~----------------~--~~~~~~~~~ 225 (495)
T PRK14995 167 NVPIVLVVMGLTARYVPRQ---AGRRDQPLNLGHALMLIVAILLLVYSAKTA----------------L--KGFLSLWVT 225 (495)
T ss_pred HHHHHHHHHHHHHHhCCCC---CCCCCCCCChHhHHHHHHHHHHHHHHHHhc----------------c--ccCCchHHH
Confidence 8876666655543333321 111111123322222111100000000000 0 000000000
Q ss_pred h-----hhccccccccCCCCCCCcccccchhhHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCccc
Q 012670 189 K-----AAVVSDAEIKSGDFSNPWILCTVTQVEELKILIR--MFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTI 261 (458)
Q Consensus 189 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 261 (458)
. .......... ++...+++..+.+.+.. ..............+......+.. +.+...+-...
T Consensus 226 ~~~~~~~~~~l~~f~~-------~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~lq~v~g~s~~ 295 (495)
T PRK14995 226 SLTLLTGALLLGLFIR-------TQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQ---ELQFVHGLSPL 295 (495)
T ss_pred HHHHHHHHHHHHHHHH-------HHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHH
Confidence 0 0000000000 00000011111111100 000001111111111111111111 11111100011
Q ss_pred CcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 012670 262 PPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVS 341 (458)
Q Consensus 262 ~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
..+.......+...+..++..+ +.+|. .+++.+..|.++.+++++.+.....
T Consensus 296 ~ag~~~~~~~~~~~~~~~~~g~----l~~r~-------g~~~~~~~g~~~~~~~~~~l~~~~~----------------- 347 (495)
T PRK14995 296 EAGMFMLPVMVASGFSGPIAGI----LVSRL-------GLRLVATGGMALSALSFYGLAMTDF----------------- 347 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHc-------CchHHHHHHHHHHHHHHHHHHHhcC-----------------
Confidence 2222333333444455555555 45553 2334567788877777766554321
Q ss_pred ccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 342 VPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 342 ~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
..+.+......++.|+|.++..++....+.+.+|++.+|..++++++.+++|+.+|..+.+.+.+
T Consensus 348 -~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 348 -STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred -CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12444456678899999999999999999999999999999999999999999999999998854
No 22
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.62 E-value=1.1e-13 Score=140.21 Aligned_cols=269 Identities=10% Similarity=-0.011 Sum_probs=157.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|++.+...|...+.+.|.+++++ |.+++++......+|..+||.+++++.++.+||+.|++.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 56778899999999999999999999999998776 888999999888999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhh
Q 012670 110 ALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDK 189 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (458)
++..+++.+..+...++.+++++++.+..+ ..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~ 207 (406)
T PRK15402 174 AALAALSFFGLWRAMPETAGRVGEKLSLKE----------------------------------------------LGRD 207 (406)
T ss_pred HHHHHHHHHHHHHhCCCCCccccccccHHH----------------------------------------------HHHH
Confidence 876666555433322211000000000000 0000
Q ss_pred hhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccccc
Q 012670 190 AAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSF 269 (458)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~l 269 (458)
. +.....+.+................+......+..+ ..+ .. ....+.....
T Consensus 208 ~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g--~~--~~~~g~~~~~ 259 (406)
T PRK15402 208 Y----------------------KLVLKNRRFVAGALALGLVSLPLLAWIALSPVILIS--GEQ--LS--SYEYGLLQVP 259 (406)
T ss_pred H----------------------HHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhC--CC--HHHHHHHHHH
Confidence 0 000000111111111000000001111111111111 111 10 1111111111
Q ss_pred hhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHH
Q 012670 270 DVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQ 349 (458)
Q Consensus 270 n~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 349 (458)
..+..++..++.++ +.+| .+..+.+.++.++.+++...+...... ...+++|+
T Consensus 260 ~~~~~~~g~~~~g~----l~~r-------~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------~~~~~~~~ 312 (406)
T PRK15402 260 VFGALIAGNLTLAR----LTSR-------RPLRSLIRMGLWPMVAGLLLAALATVI----------------SSHAYLWL 312 (406)
T ss_pred HHHHHHHHHHHHHH----HHHh-------cCHHHHHHHHHHHHHHHHHHHHHHHHc----------------ccccHHHH
Confidence 11222233333333 4444 334455677877777777776654311 01256677
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 350 IPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 350 i~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
++..++.++|++...+..+...... +++.+|++.+++++.+.++..+|+.+.+.+.
T Consensus 313 ~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 313 TAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8889999999999988887777654 4589999999999999999999999988764
No 23
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.1e-13 Score=135.97 Aligned_cols=287 Identities=16% Similarity=0.175 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+++.++++|++.|+..|.+.+...+...|..|+++ |++++++...+..++..+|.++|.|+.|.+|||+.|++.
T Consensus 100 ~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~i 173 (394)
T COG2814 100 SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAI 173 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHH
Confidence 89999999999999999999999999999999987 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCC--CchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchh
Q 012670 110 ALFMGFAIASFFSGTSLYRFQRPGG--SPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCL 187 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
+...+++++..+...+ ++++++. .++.
T Consensus 174 a~l~ll~~~~~~~~lP--~~~~~~~~~~~~~------------------------------------------------- 202 (394)
T COG2814 174 AVLALLALLLLWKLLP--PSEISGSLPGPLR------------------------------------------------- 202 (394)
T ss_pred HHHHHHHHHHHHHhCC--CccCCCCCCcchh-------------------------------------------------
Confidence 8766666655443332 0111100 0000
Q ss_pred hhhhccccccccCCCCCCCcccccchhhHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCc-ccCcC
Q 012670 188 DKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIR--MFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSF-TIPPA 264 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~ 264 (458)
++.+.+.+ .........+++......++++. ..+.... ++ .-..+
T Consensus 203 ----------------------------~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~---P~L~~v~-g~s~~~vs 250 (394)
T COG2814 203 ----------------------------TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIR---PFLESVA-GFSVSAVS 250 (394)
T ss_pred ----------------------------HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHH---HHHHHcc-CCCHhHHH
Confidence 01111111 11111112222222222222221 1111111 11 11233
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012670 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
+...++++..++...+.++ +.+| ++.+-+....++.++.+..+.+.. .
T Consensus 251 ~~Ll~~Gv~~~~Gn~~gGr----l~dr--------~~~~~l~~~~~l~a~~~l~l~~~~--------------------~ 298 (394)
T COG2814 251 LVLLAFGIAGFIGNLLGGR----LADR--------GPRRALIAALLLLALALLALTFTG--------------------A 298 (394)
T ss_pred HHHHHHHHHHHHHHHHHhh----hccc--------cchhHHHHHHHHHHHHHHHHHHhc--------------------c
Confidence 3444455555555555555 4443 222445556667777776666542 2
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+.+..+...++.+++.............+.+ ++.++..++++....++|..+|..+++.+.+.
T Consensus 299 ~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~---------------- 361 (394)
T COG2814 299 SPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA---------------- 361 (394)
T ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 3444444555555555544444444444433 47888999999999999999999999988632
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012670 425 GHLDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
.++....++.+.+.+++.+..+...++.++
T Consensus 362 ~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 362 LGYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 235566777777777666666555544444
No 24
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.61 E-value=5.1e-14 Score=145.20 Aligned_cols=86 Identities=14% Similarity=0.250 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc-cchhhhHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA-GWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~-gw~~~F~i 108 (458)
+...+++.+++.|++.+...|...+.+.|++|+++ |+++++++..+.++|.+++|++++++.+.. |||+.|++
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i 203 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence 45678899999999999999999999999999887 999999999999999999999999999884 99999999
Q ss_pred HHHHHHHHHHHHH
Q 012670 109 PALFMGFAIASFF 121 (458)
Q Consensus 109 ~~i~~~l~~ii~~ 121 (458)
.++..++..+.++
T Consensus 204 ~~~~~~~~~~~~~ 216 (465)
T TIGR00894 204 FGIVGCAWSLLWF 216 (465)
T ss_pred hhHHHHHHHHHHH
Confidence 8876655544443
No 25
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.61 E-value=1.7e-13 Score=137.70 Aligned_cols=262 Identities=11% Similarity=0.045 Sum_probs=158.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+.+.|++.+...|...++..|+ +++ |+++++......++|..+||+++|++.+++|||..|++
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 4678888889999999999999998888876 223 78889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++..+..+ ..+ +.+|++++.. + . .....++
T Consensus 164 ~~~~~~~~~~~~~-~~~---~~~~~~~~~~-----------------~--------------------~--~~~~~~~-- 198 (382)
T PRK11128 164 LTAGVASMLLGQL-LRP---TIMPQGESRQ-----------------Q--------------------E--SAGWPAW-- 198 (382)
T ss_pred HHHHHHHHHHHHH-ccC---CCCCcccccc-----------------c--------------------c--ccccchH--
Confidence 7765444433322 221 1111110000 0 0 0000000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
++..+.|.+.... ....+....+....+.+.....+.+.+ +...+.+..
T Consensus 199 ------------------------~~i~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~g~s----~~~~g~~~~ 247 (382)
T PRK11128 199 ------------------------KALLKEPTVWRFL---LCVSLLQGSHAAYYGFSAIYWQAAGYS----ASTIGYLWS 247 (382)
T ss_pred ------------------------HHHHcChhHHHHH---HHHHHHHHHhHhHHHHHHHHHHHCCCC----HhHHHHHHH
Confidence 0011112221111 112222222222222222211111111 111233334
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012670 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
++.+..++...+.++ +.+| .+.++.+.++.++.+++++.+...+ +.++
T Consensus 248 ~~~~~~~~~~~~~g~----l~~r-------~~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~ 295 (382)
T PRK11128 248 LGVVAEVLIFAFSNR----LFRR-------WSARDLLLLSAICGVVRWGLMGSTT---------------------ALPW 295 (382)
T ss_pred HHHHHHHHHHHHHHH----HHHH-------CCHHHHHHHHHHHHHHHHHHHHhhh---------------------hHHH
Confidence 444444444444444 4555 4445667778888777776665432 5666
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHH-HHHHHHHHHhhHHhhhhhh
Q 012670 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSL-LTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~-~~~~ig~~ig~~l~~~~~~ 407 (458)
+++..++.++++++..+....++.+. |++.++..+++.+ +.+.+|..+|+.+.+.+.+
T Consensus 296 ~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 296 LIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999999999998887 5556688888886 6677888899999997763
No 26
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.59 E-value=3.5e-14 Score=162.00 Aligned_cols=288 Identities=11% Similarity=-0.011 Sum_probs=162.5
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+.+.|...+++.|++++++ |++++++..++.++|.++||+++|++.+..||++.|.+
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 468889999999999999999999999999999887 99999999999999999999999999999999999955
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++++++.+...+. +++...... +.+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------------------------------------~~~~~~ 212 (1140)
T PRK06814 180 LMGIAVLGWLASLFIPKT----GNAAPDLKI-------------------------------------------DRNIIR 212 (1140)
T ss_pred HHHHHHHHHHHHhhCCCC----CCCCCCCee-------------------------------------------ccchHH
Confidence 555444444443332221 111100000 000000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
... . .+ +.+...+.++... .....++.......+.+..+... .++.-....+.+..
T Consensus 213 ~~~----~---------~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~---~~g~~~~~~g~~~~ 268 (1140)
T PRK06814 213 STI----T---------LL-----KYAKADKRIWLAI---LGISWFWLVGAVVLSQLPLLAKE---TLGGDENVATLFLA 268 (1140)
T ss_pred HHH----H---------HH-----HHHhcCchHHHHH---HHHHHHHHHHHHHHHHhHHHHHH---HcCCchHHHHHHHH
Confidence 000 0 00 0000011111111 11112222222111111111111 11100112333445
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-CCCCccchhH
Q 012670 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVD-QNVSVPISIF 347 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~ 347 (458)
...+..++...+..+ +.++. ...+.+..+.++.+++.+.+.+..... . .....+.. ..-....+.+
T Consensus 269 ~~~~g~~ig~~~~g~----l~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 335 (1140)
T PRK06814 269 VFSVGVAVGSFLASK----LSEGR-------ITLLYVPIGALLMGLFGLDLAFASSSV-P-AEPAQLKSILVFLSKRHGW 335 (1140)
T ss_pred HHHHHHHHHHHHHHH----HhCCc-------eeeeeehHHHHHHHHHHHHHHhccccc-c-cccccccchhhhhcccccH
Confidence 555555566655555 33222 111233344444444333332210000 0 00000000 0000002445
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
++++..++.|++.++..+...+++.+.+|++.+|+++|++++...+|..+++.+.+.+.
T Consensus 336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778889999999999999999999999999999999999999999999999988775
No 27
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.58 E-value=1.9e-14 Score=141.91 Aligned_cols=84 Identities=20% Similarity=0.417 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++++++.|++.+...|...+++.|++++++ |+++++++....++|..+||.+++++.+++|||+.|++.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 45588999999999999999999999999999977 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 012670 110 ALFMGFAIAS 119 (458)
Q Consensus 110 ~i~~~l~~ii 119 (458)
++..++..++
T Consensus 158 ~~~~~~~~il 167 (352)
T PF07690_consen 158 AILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHH
T ss_pred cchhhhhhhh
Confidence 9877777664
No 28
>PRK10504 putative transporter; Provisional
Probab=99.58 E-value=3.2e-13 Score=139.40 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++++++.|+|.+...|...+.+.|.+|+++ |+++++++....++|..+||.++|++.++.|||+.|+++
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 67788899999999999999999999999998765 899999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 012670 110 ALFMGFAIASFFS 122 (458)
Q Consensus 110 ~i~~~l~~ii~~~ 122 (458)
.+...+..+....
T Consensus 171 ~~~~~l~~~~~~~ 183 (471)
T PRK10504 171 IPVGIIGAIATLM 183 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 8766655554433
No 29
>PRK10054 putative transporter; Provisional
Probab=99.58 E-value=7.4e-14 Score=140.92 Aligned_cols=263 Identities=14% Similarity=0.106 Sum_probs=155.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+.+.+.+.+.+.|...+...|.+++++ |++++++.+...|+|.++||.+++++.+ .||+..|++.
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~ 167 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA 167 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence 45566677778888888889999999999998765 9999999999999999999999999875 7999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhh
Q 012670 110 ALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDK 189 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (458)
++..++.++...+..++ ++|++++..+ + . + +.
T Consensus 168 ~~~~~i~~i~~~~~~~~---~~~~~~~~~~---------~---------------------------~--------~-~~ 199 (395)
T PRK10054 168 AICSAFPLVFIQIWVQR---SEKAIATETG---------S---------------------------V--------W-SP 199 (395)
T ss_pred HHHHHHHHHHHHHHHhc---cccccccchh---------h---------------------------h--------h-hh
Confidence 87776665443222221 1111100000 0 0 0 00
Q ss_pred hhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhh-cCCCcCcccCcCcccc
Q 012670 190 AAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVM-DTSIGSFTIPPASLSS 268 (458)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~l~~ 268 (458)
++....|.+.... ....+....+....+.+....... +.... ....+.+..
T Consensus 200 -----------------------~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~ 251 (395)
T PRK10054 200 -----------------------SVLLQDKALLWFT---CSGFLASFVSGAFASCISQYVMVVADSDFA--EKVVAVVLP 251 (395)
T ss_pred -----------------------hhhccCceehHHH---HHHHHHHHHHHHhhhhHHHHHHHhcccchH--HHHHHHHHH
Confidence 0000011111111 111111111111111111111111 11100 111122333
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012670 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
.+....+..++..++ +.+| .++++.+..|.++.++++..+.... .+.+.
T Consensus 252 ~~~~~~~~~~~~~g~----~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~ 300 (395)
T PRK10054 252 VNAAMVVSLQYSVGR----RLNA-------ANIRPLMTAGTLCFVIGLVGFIFSG--------------------NSLLL 300 (395)
T ss_pred hhhhheeeehhHHHH----HHcc-------CCchhHHHHHHHHHHHHHHHHHHcc--------------------hHHHH
Confidence 333333333333333 3333 3444566777777777776655421 13444
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+.+..++.++|+....|...+.+.+.+|++++|.+.+..+ ...+|..+|+.+.+.+.+
T Consensus 301 ~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~ 358 (395)
T PRK10054 301 WGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT 358 (395)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 5567889999999999999999999999999999988765 566899999999998864
No 30
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.58 E-value=3.1e-13 Score=138.15 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=72.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.|...|...+.+.|++++++ |++++++++.+.++|..++|.+++++.+.+|||+.|++
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 356777788889999999999999999999998876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 012670 109 PALFMGFA 116 (458)
Q Consensus 109 ~~i~~~l~ 116 (458)
.++..++.
T Consensus 183 ~~i~~~~~ 190 (434)
T PRK11663 183 AGIIAIVV 190 (434)
T ss_pred HHHHHHHH
Confidence 87655443
No 31
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.58 E-value=5.5e-14 Score=144.55 Aligned_cols=307 Identities=11% Similarity=0.023 Sum_probs=167.5
Q ss_pred hhHHHHHH-HHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 30 QYAVFFFG-LYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~-l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
+.+.+++. +++.|++.|...+...+.+.++++ ++ |+++.++.+.+.++|..++|++++++.+.+|||+.|++
T Consensus 106 ~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~ 178 (455)
T TIGR00892 106 NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLI 178 (455)
T ss_pred hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 45555543 578899999876777788888884 44 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..+++.+..++.++.-.. ++..+..+ . ...+..+ ..+..+..+..+
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~---------~---~~~~~~~-----------------~~~~~~~~~~~~ 227 (455)
T TIGR00892 179 LGGLLLHCCVCGALMRPVGPS--QRVSKSKS---------K---EGLPPDG-----------------STKKLSKKSTAE 227 (455)
T ss_pred HHHHHHHHHHHHHHhCCCCcc--cccccccc---------c---ccCCCCC-----------------ccccccccchhh
Confidence 988766655544444331100 00000000 0 0000000 000000000000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
.. ..+. ..+ ....+.+ .............+....+.+..... +.... ....+.+..
T Consensus 228 ~~--------------~~~~--~~~-~~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s--~~~~g~~~~ 283 (455)
T TIGR00892 228 KI--------------NRFL--DFS-LFTHRGF---LVYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD--EYEAAFLLS 283 (455)
T ss_pred hh--------------hhhc--chH-HhcCchH---HHHHHHHHHHHHHccchHHHHHHHHH--HcCCC--HHHHHHHHH
Confidence 00 0000 000 0001111 11111111222222222222222111 11111 112233344
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012670 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQR--MGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~--~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
+..+..++..|+..++. +|.. .++.++ +..+.++.++++++.... .+.
T Consensus 284 ~~~~~~~~~~~~~g~l~----d~~~-----~~~~~~~~~~~~~~~~~l~~ll~~~~---------------------~~~ 333 (455)
T TIGR00892 284 IIGFVDIFARPSCGLIA----GLKW-----IRPHVQYLFSFALLFNGLTHLLCALA---------------------GDY 333 (455)
T ss_pred HHHHHHHHHHHHHHHHh----cccc-----cCHHHHHHHHHHHHHHHHHHHHHHHh---------------------chH
Confidence 44555556666666533 2211 122222 233334344443333221 255
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012670 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
+++++..++.|++.+...+...+.+.+..|++.+|..+|+++...++|+.+|+.+.+.+.+.. ++
T Consensus 334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~---------------g~ 398 (455)
T TIGR00892 334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT---------------KN 398 (455)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc---------------CC
Confidence 667778889999999999999999999999999999999999999999999999999765321 12
Q ss_pred hHHHHHHHHHHHHHHHH
Q 012670 427 LDYFFWLLAGLSIFNML 443 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v 443 (458)
+...|.+.+++.+++.+
T Consensus 399 ~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 399 YKYIFYASGSIVVSAGL 415 (455)
T ss_pred cchHHHHhhHHHHHHHH
Confidence 34556666655555444
No 32
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.57 E-value=3.9e-13 Score=134.04 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=69.7
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccch--hhHHHHHHHHHHHHHhHhhhhccccccchhhh
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSF--FNWFYFSINIGALISSSLIVWIQDNAGWGLGF 106 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~--~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F 106 (458)
.+.+.+++.+.+.+.+.+...|...++..|..++++ |.++ .++.+...++|..+||.+++++.+++|||+.|
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f 158 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMF 158 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHH
Confidence 356777788888888888888988888888876554 4433 68888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 012670 107 GIPALFMGFAIASFF 121 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~ 121 (458)
++.++..++..+..+
T Consensus 159 ~~~~~~~~~~~~~~~ 173 (375)
T TIGR00899 159 LTAALAFVLCGVLVW 173 (375)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998876665555433
No 33
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.57 E-value=3e-13 Score=132.81 Aligned_cols=264 Identities=20% Similarity=0.249 Sum_probs=183.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+...+++.+++.|++.+...|...+++.|.+++++ |++++++.+...++|..+||.+++++.+..+||+.|++
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 367888999999999999999999999999999876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++..+...+..
T Consensus 159 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 174 (352)
T cd06174 159 LAILGLLLALLLLFLL---------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 8876666555432211
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
|.+.... ......................+. ... .....+.+..
T Consensus 175 ------------------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~ 218 (352)
T cd06174 175 ------------------------------RLLLLLA---LAFFLLSFGYYGLLTYLPLYLQEV-LGL--SAAEAGLLLS 218 (352)
T ss_pred ------------------------------HHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHh-cCC--CHHHHHHHHH
Confidence 0000001 011111111111111111111110 000 0112334444
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhH
Q 012670 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQ-RMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIF 347 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~-~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 347 (458)
...+..++..++..+ +.+|.++ ++ .+..+.++..+++......+ +.+
T Consensus 219 ~~~~~~~i~~~~~~~----~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~---------------------~~~ 266 (352)
T cd06174 219 LFGLGGILGALLGGL----LSDRLGR-------RRLLLLIGLLLAALGLLLLALAP---------------------SLA 266 (352)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHh-------hhHHHHHHHHHHHHHHHHHHHhc---------------------cHH
Confidence 555555566666665 4444322 23 56778888888877766542 466
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchh
Q 012670 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHL 427 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
...+..++.+++++...+...+++.+..|++.|+..+|+++...++|..+++.+.+.+.+. .++
T Consensus 267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~----------------~~~ 330 (352)
T cd06174 267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT----------------GGY 330 (352)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------cCc
Confidence 7788999999999999999999999999999999999999999999999999999977531 123
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012670 428 DYFFWLLAGLSIFNMLLYV 446 (458)
Q Consensus 428 ~~~f~~~a~i~~~~~v~~~ 446 (458)
...|.+.+++.+++.+.+.
T Consensus 331 ~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 331 GGVFLILAALALLAALLLL 349 (352)
T ss_pred chHHHHHHHHHHHHHHHhe
Confidence 4567777777776666543
No 34
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.57 E-value=2.8e-13 Score=135.21 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++.+++.|+|.+.. +.....+.+++|+++ |+++++++..+.++|.++++++++++.+++|||+.|++.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 6788999999999999964 555566689998766 999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHH
Q 012670 110 ALFMGFAIASF 120 (458)
Q Consensus 110 ~i~~~l~~ii~ 120 (458)
++..++..++.
T Consensus 151 ~~l~~~~~~~~ 161 (368)
T TIGR00903 151 AAVAAAGIILV 161 (368)
T ss_pred HHHHHHHHHHH
Confidence 76554444433
No 35
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.57 E-value=5.9e-13 Score=134.34 Aligned_cols=83 Identities=16% Similarity=0.285 Sum_probs=75.6
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.|...|...+++.|++++++ |+++++++..+.++|..+||++++++.+.+|||+.|++
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 478899999999999999999999999999998876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 012670 109 PALFMGFAI 117 (458)
Q Consensus 109 ~~i~~~l~~ 117 (458)
.++..++..
T Consensus 180 ~~~l~~~~~ 188 (394)
T PRK10213 180 AAVMGVLCI 188 (394)
T ss_pred HHHHHHHHH
Confidence 876555443
No 36
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.56 E-value=5.2e-13 Score=136.96 Aligned_cols=87 Identities=17% Similarity=0.398 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhh---hhccccccchhhh
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLI---VWIQDNAGWGLGF 106 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~---g~l~~~~gw~~~F 106 (458)
+.+.+++++++.|+|.|...+...++++|++++++ |++++++++.+.++|.+++|.++ +++.+..|||+.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 45688999999999999999999999999999887 99999999999999999999999 8877889999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 012670 107 GIPALFMGFAIASFFS 122 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~~ 122 (458)
++.++..++.++..++
T Consensus 200 ~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 200 GLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9976655555444433
No 37
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.55 E-value=8.2e-13 Score=132.66 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=75.1
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.|...|...+.+.|++++++ |+++++++..+.++|..+||.+++++.+..|||+.|++
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 478899999999999999999998999999988765 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012670 109 PALFMGFAIAS 119 (458)
Q Consensus 109 ~~i~~~l~~ii 119 (458)
.++..++..+.
T Consensus 163 ~~~~~~~~~~~ 173 (382)
T PRK10091 163 IAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHH
Confidence 88765555443
No 38
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.55 E-value=1e-12 Score=132.55 Aligned_cols=285 Identities=13% Similarity=0.082 Sum_probs=164.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc-cchhhhHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA-GWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~-gw~~~F~i 108 (458)
+...+++++++.|+|.|...+...+.+.|+++ ++ |+++++++..+.+.|..+|+.+++++.++. +||+.|.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 67788999999999999999999999999986 55 899999999999999999999999998875 89998876
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++.++.++...+ ++|++++ .+ + ..
T Consensus 169 ~~~~~~~~~~~~~~~~~----~~~~~~~------------------~~--------------------~---~~------ 197 (393)
T PRK09705 169 WALPAVVALFAWWWQSA----REVASSH------------------KT--------------------T---TT------ 197 (393)
T ss_pred HHHHHHHHHHHHHHHhc----CCCcccc------------------CC--------------------C---cC------
Confidence 55544443333322211 1111100 00 0 00
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMF-PIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLS 267 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 267 (458)
+.+.. .+.+ .+... ........++......+.++ . +.+.+ ....+.+.
T Consensus 198 -----------------~~~~l-----~~~~-~~~l~~~~~~~~~~~~~~~~~lp~~l-~---~~g~s----~~~ag~~~ 246 (393)
T PRK09705 198 -----------------PVRVV-----FTPR-AWTLGVYFGLINGGYASLIAWLPAFY-I---EIGAS----AQYSGSLL 246 (393)
T ss_pred -----------------Ccccc-----cCHh-HHHHHHHHHHHHHHHHHHHHHHHHHH-H---HcCCC----hhhhhHHH
Confidence 00000 0111 11111 11111111111111111111 1 11111 11122333
Q ss_pred cchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhH
Q 012670 268 SFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIF 347 (458)
Q Consensus 268 ~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 347 (458)
.+..+..++..++.++ +.+| .++.+.+.++..+.++++..+.... .+..
T Consensus 247 ~~~~i~~i~g~~~~g~----l~~r-------~~~~~~~~~~~~l~~~~~~~~~~~~--------------------~~~~ 295 (393)
T PRK09705 247 ALMTLGQAAGALLMPA----MARH-------QDRRKLLMLALVLQLVGFCGFIWLP--------------------LQLP 295 (393)
T ss_pred HHHHHHHHHHHHHHHH----HHhh-------ccchHHHHHHHHHHHHHHHHHHHcc--------------------chHH
Confidence 3444444444444444 4444 3333556667777666665544321 1111
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012670 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSP-DAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP-~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
.. ..++.+++.+...|.....+.+..| ++.+|..+|+.+....++..+++.+.+.+.+.. ++
T Consensus 296 ~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~---------------g~ 358 (393)
T PRK09705 296 VL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS---------------GN 358 (393)
T ss_pred HH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------CC
Confidence 11 2345677777888887777777774 678999999999999999999999999876432 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Q 012670 427 LDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
+...|.+.++.+++..++...+.++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 359 YLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455666666666666655444333
No 39
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.54 E-value=9e-13 Score=136.55 Aligned_cols=268 Identities=17% Similarity=0.138 Sum_probs=169.6
Q ss_pred CchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhH
Q 012670 28 PAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFG 107 (458)
Q Consensus 28 ~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~ 107 (458)
..+++.+++..++.|++.+...|.-++++.+..|+++ ..++.++.....|+.-++||.++|.+....|-.+.|.
T Consensus 100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ 173 (524)
T PF05977_consen 100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL 173 (524)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 3467888899999999999999999999999999877 8999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchh
Q 012670 108 IPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCL 187 (458)
Q Consensus 108 i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
++++..++.++.+...++.. +++..+.....+.+....+ +
T Consensus 174 inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~r------------------------------------y- 213 (524)
T PF05977_consen 174 INALSFLISILALLRWKPPP---PPSSLPRERFFSALREGLR------------------------------------Y- 213 (524)
T ss_pred HHHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHHH------------------------------------H-
Confidence 99988777665554443321 1111110000000000000 0
Q ss_pred hhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HhhcCCCcCcccCcCcc
Q 012670 188 DKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQG-MVMDTSIGSFTIPPASL 266 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~~~l 266 (458)
+.+.+.+...+.. ..++..........+.... ...+.. ....+.+
T Consensus 214 ---------------------------v~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a~~~l~~~----a~~yGll 259 (524)
T PF05977_consen 214 ---------------------------VRSSPPLRSVLLR---SFLFNLFASAVWALLPLFARDVLGGG----ASGYGLL 259 (524)
T ss_pred ---------------------------HhcchHHHHHHHH---HHHHHHhhhHHHHhhhHHHHHHhCCc----HHHHHHH
Confidence 0001111111111 1111111111111122221 111111 1111222
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012670 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
...-++..++.+ +..+..+| + .+..+.+..+.++.+++++.+++.. +.
T Consensus 260 ~a~~gvGai~Ga-----l~~~~l~~---~---~~~~~lv~~~~~~~a~~~~~lal~~---------------------~~ 307 (524)
T PF05977_consen 260 LAAFGVGAILGA-----LLLPRLRR---R---LSSRRLVLLASLLFALALLLLALSP---------------------SF 307 (524)
T ss_pred HHHHHHHHHHHH-----HHHHHhhc---c---cCcchhhHHHHHHHHHHHHHHhcch---------------------HH
Confidence 222222222222 22222222 2 4444566777777777777766642 56
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+...+..++.|++........++.+++.+|+.++|+.++++.+....+..+|..+.+.+.+
T Consensus 308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 308 WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788999999999999999999999999999999999999999999999999998764
No 40
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.54 E-value=1.3e-12 Score=131.76 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=67.6
Q ss_pred HHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHHHHH
Q 012670 35 FFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMG 114 (458)
Q Consensus 35 ~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~~ 114 (458)
++.+++.|++.|...|...+++.|++|++| |++++++.....++|..+||.++|++.+. .|+..|++.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 678889999999999999999999999876 99999999999999999999999999885 58888887766554
Q ss_pred HHHHH
Q 012670 115 FAIAS 119 (458)
Q Consensus 115 l~~ii 119 (458)
++.+.
T Consensus 165 ~~~~~ 169 (393)
T PRK11195 165 LAALF 169 (393)
T ss_pred HHHHH
Confidence 44443
No 41
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.52 E-value=1.6e-12 Score=130.09 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=77.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+...+...+++.|.+|+++ |++++++++...++|..+||.+++++.++.|||+.|++
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 367788899999999999999999999999999776 99999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHh
Q 012670 109 PALFMGFAIASFFS 122 (458)
Q Consensus 109 ~~i~~~l~~ii~~~ 122 (458)
.++..++..+..++
T Consensus 165 ~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 165 LSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHH
Confidence 87766655554433
No 42
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.51 E-value=4.1e-12 Score=131.80 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=76.6
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc-cccchhhhH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD-NAGWGLGFG 107 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~-~~gw~~~F~ 107 (458)
.+.+.+++.+++.+++.+...+...+++.|++|++| |+++.++...+.++|.++++.+++++.+ ..|||..|+
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~ 178 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW 178 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 467778888899999999999999999999999876 9999999999999999999999999998 579999999
Q ss_pred HHHHHHHHHHHHHHh
Q 012670 108 IPALFMGFAIASFFS 122 (458)
Q Consensus 108 i~~i~~~l~~ii~~~ 122 (458)
+.++..++..+..++
T Consensus 179 i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 179 LMAALLIPCIIATLL 193 (491)
T ss_pred HHHHHHHHHHHHHHh
Confidence 988766665554433
No 43
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.51 E-value=3.5e-12 Score=131.90 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc--------cccc
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ--------DNAG 101 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~--------~~~g 101 (458)
....+++++++.|++.|+..|...++++|++|+++ |+++++++..+..+|.++++.+++.+. +.+|
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 192 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence 45677899999999999999999999999999887 999999999999999999988876543 4579
Q ss_pred chhhhHHHHHHHHHHHHHHHh
Q 012670 102 WGLGFGIPALFMGFAIASFFS 122 (458)
Q Consensus 102 w~~~F~i~~i~~~l~~ii~~~ 122 (458)
||+.|++.++..++..+..++
T Consensus 193 Wr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 193 WRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHc
Confidence 999999987766665544433
No 44
>PRK03699 putative transporter; Provisional
Probab=99.50 E-value=3.1e-12 Score=129.05 Aligned_cols=85 Identities=9% Similarity=0.166 Sum_probs=71.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc-ccccchhhhH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ-DNAGWGLGFG 107 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~-~~~gw~~~F~ 107 (458)
.+...+++.+.+.|++.|...+...+.+.|++|+++ |+++++..+...++|..++|.+.+++. +..|||+.|.
T Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 367788899999999999999999999999997765 899999999999999999999988875 4679999999
Q ss_pred HHHHHHHHHHHH
Q 012670 108 IPALFMGFAIAS 119 (458)
Q Consensus 108 i~~i~~~l~~ii 119 (458)
+.++..++..+.
T Consensus 167 ~~~~~~~~~~~~ 178 (394)
T PRK03699 167 CIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHH
Confidence 877655554443
No 45
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.50 E-value=3.5e-12 Score=128.63 Aligned_cols=86 Identities=12% Similarity=0.136 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhc--cchhhHHHHHHHHHHHHHhHhhhhccccccchhhhH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKK--GSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFG 107 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R--~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~ 107 (458)
+.+.+++...+.+...+...|...++..|+.++++ | ....++...+.++|.++||++++++.+++|||+.|+
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~ 177 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence 45555444444444455678888888888775544 3 234578889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 012670 108 IPALFMGFAIASFF 121 (458)
Q Consensus 108 i~~i~~~l~~ii~~ 121 (458)
+.++..++..+...
T Consensus 178 ~~~~~~~~~~~~~~ 191 (393)
T PRK15011 178 SAAVAFIVCGVMVW 191 (393)
T ss_pred HHHHHHHHHHHHHH
Confidence 98876655554433
No 46
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.50 E-value=8.8e-12 Score=124.62 Aligned_cols=85 Identities=15% Similarity=0.240 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|++.+...+...+++.|.+++++ |++++++++...++|..++|.+++++.+..|||+.|++.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 56778899999999999999999999999998776 999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 012670 110 ALFMGFAIASF 120 (458)
Q Consensus 110 ~i~~~l~~ii~ 120 (458)
++..++..+..
T Consensus 152 ~~~~~~~~~~~ 162 (377)
T PRK11102 152 ALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHH
Confidence 77665554443
No 47
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.49 E-value=1.9e-12 Score=133.59 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=73.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc---cchhh
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA---GWGLG 105 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~---gw~~~ 105 (458)
.+.+.+++.+++.|++.|...|...+.++|++|+++ |+++++++..+.++|.++++++..++.+.. +||..
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 478889999999999999999999999999999987 999999999999999999999988876653 69999
Q ss_pred hHHHHHHHHHHHHH
Q 012670 106 FGIPALFMGFAIAS 119 (458)
Q Consensus 106 F~i~~i~~~l~~ii 119 (458)
|.+.++..++..++
T Consensus 194 f~~~g~~~~~~~i~ 207 (467)
T PRK09556 194 FIFPSIIALIIGFI 207 (467)
T ss_pred HHHHHHHHHHHHHH
Confidence 98877655544333
No 48
>TIGR00895 2A0115 benzoate transport.
Probab=99.49 E-value=4.2e-12 Score=127.19 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|++.+...|...+++.|++++++ |+++++++..+.++|..++|.+++++.++.||++.|++.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 56778899999999999999999999999998776 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 012670 110 ALFMGFAIAS 119 (458)
Q Consensus 110 ~i~~~l~~ii 119 (458)
++...+..++
T Consensus 178 ~~~~~~~~~~ 187 (398)
T TIGR00895 178 GIAPLLLLLL 187 (398)
T ss_pred hhHHHHHHHH
Confidence 6544444433
No 49
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.48 E-value=1e-11 Score=126.13 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=74.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++++++.|++.+...+...+.+.|.+++++ |.++++++....++|..+||++++++.++.|||+.|++
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 377888999999999998777777888999998876 89999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHH
Q 012670 109 PALFMGFAIAS 119 (458)
Q Consensus 109 ~~i~~~l~~ii 119 (458)
.++..+++.+.
T Consensus 176 ~~~~~~i~~~~ 186 (413)
T PRK15403 176 IAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHH
Confidence 88766666554
No 50
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.48 E-value=1.6e-12 Score=129.18 Aligned_cols=287 Identities=13% Similarity=0.047 Sum_probs=162.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++++.+.|+|.+...+.....+.++++ ++ |+++.+++..+.++|..+++.+.+++.+..|||+.|++
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 367888899999999999888888888888886 34 89999999999999998877777777777899999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
.++..++..+..++..++ +|++.. . +.++. ..++.++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~----~~~~~~-~-----------------~~~~~-------------------~~~~~~~~- 199 (377)
T TIGR00890 162 MGIIFLLVIVLGAFLIGY----PPGQLI-K-----------------TNIEV-------------------SVKDYTVW- 199 (377)
T ss_pred HHHHHHHHHHHHHHheec----Cchhcc-c-----------------cCccc-------------------chhhhhHH-
Confidence 887666555443332221 111000 0 00000 00000000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCcccc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSS 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (458)
+....+.+........ ............+..... +.... ....+.+..
T Consensus 200 -------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~ 247 (377)
T TIGR00890 200 -------------------------EMLRTPQFWVLYLSFF---LNAVSGLLLIGLYKPYGQ--SLGLS--DGFLVLAVS 247 (377)
T ss_pred -------------------------HHHcCccHHHHHHHHH---HHhHHHHHHHHHHHHHHH--HcCCC--HHHHHHHHH
Confidence 0000011111111111 111111111111111111 11110 111223334
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012670 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
+..+..++..++..+ +.+|.+ +++.+.++.++.++++....... ..+.+.
T Consensus 248 ~~~~~~~~~~~~~g~----l~dr~g-------~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~ 297 (377)
T TIGR00890 248 ISSIFNGGGRPFLGA----LSDKIG-------RQKTMSIVFGISAVGMAAMLFIP-------------------MLNDVL 297 (377)
T ss_pred HHHHHHHHHHHHHHH----HHHHHh-------hhhhhhHHHHHHHHHHHHHHHcc-------------------cchhHH
Confidence 444444455555555 344432 22345666666777666554432 012222
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhH
Q 012670 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLD 428 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
++...++.+++.+...+...+++.+..|++.||...|+.+....+|..+++.+.+.+.+.. ++.
T Consensus 298 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~ 361 (377)
T TIGR00890 298 FLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI----------------GFE 361 (377)
T ss_pred HHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh----------------chh
Confidence 3344566677777677777888999999999999999999999999999999998765321 245
Q ss_pred HHHHHHHHHHHHHH
Q 012670 429 YFFWLLAGLSIFNM 442 (458)
Q Consensus 429 ~~f~~~a~i~~~~~ 442 (458)
..|.+.+++++++.
T Consensus 362 ~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 362 YTFIVTGAFALTSL 375 (377)
T ss_pred hHHHHHHHHHHHhc
Confidence 66666666655543
No 51
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.47 E-value=3.6e-12 Score=129.73 Aligned_cols=77 Identities=16% Similarity=0.393 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++++.+.|+|.|...+...+++.|++++++ |+++.+++..+.++|.+++|.+++++.+.+|||+.|++
T Consensus 104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 367888999999999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred HHH
Q 012670 109 PAL 111 (458)
Q Consensus 109 ~~i 111 (458)
.++
T Consensus 178 ~~~ 180 (426)
T PRK12307 178 GLL 180 (426)
T ss_pred HHH
Confidence 654
No 52
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.47 E-value=3.8e-12 Score=126.36 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=74.6
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc-------
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG------- 101 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g------- 101 (458)
.+.+.++...++.+++.+...|...+++.|++|+++ |+++.++...+.++|.++++.+++++.+..|
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~ 154 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT 154 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 345556666667888999999999999999998776 9999999999999999999999999988888
Q ss_pred -chhhhHHHHHHHHHHHHHHHh
Q 012670 102 -WGLGFGIPALFMGFAIASFFS 122 (458)
Q Consensus 102 -w~~~F~i~~i~~~l~~ii~~~ 122 (458)
||+.|++.++..++..++.++
T Consensus 155 ~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 155 LWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877666655443
No 53
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.47 E-value=8.5e-12 Score=128.24 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHH-HHHhHhhhhccccccchhhhHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGA-LISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~-~igp~l~g~l~~~~gw~~~F~i 108 (458)
+...+++.+++.|++.|...|.....+.|++++++ |++++++++.+.++|. +++|+++..+....|||+.|++
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 56677888999999999999988899999998876 9999999999999986 5566654444344599999999
Q ss_pred HHHHHHHHHHH
Q 012670 109 PALFMGFAIAS 119 (458)
Q Consensus 109 ~~i~~~l~~ii 119 (458)
.++..++..++
T Consensus 193 ~~~~~~~~~~l 203 (452)
T PRK11273 193 PAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHH
Confidence 87665554433
No 54
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.45 E-value=2.4e-11 Score=121.91 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=60.5
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccch
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWG 103 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~ 103 (458)
.+.+.+++.+++.|++.+...|...+.+.|..++++ |+++++++....++|..+||.+++++.+...|+
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 92 VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 367888999999999999999998888888887765 999999999999999999999999998764333
No 55
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.44 E-value=2.4e-11 Score=124.10 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc--------cccc
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ--------DNAG 101 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~--------~~~g 101 (458)
++..+++.|++.|+|.|+..|...+++.|++|+++ |+++.++.+.+.+.|.++++.+++.+. +.+|
T Consensus 123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 196 (432)
T PRK10406 123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG 196 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence 34578899999999999999999999999999887 999999999999999999988766554 2579
Q ss_pred chhhhHHHHHHHHHH
Q 012670 102 WGLGFGIPALFMGFA 116 (458)
Q Consensus 102 w~~~F~i~~i~~~l~ 116 (458)
||+.|++.++..++.
T Consensus 197 Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 197 WRIPFALGAVLAVVA 211 (432)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999877754443
No 56
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.44 E-value=6e-12 Score=122.57 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=78.1
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhh--hhccccccchhhh
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLI--VWIQDNAGWGLGF 106 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~--g~l~~~~gw~~~F 106 (458)
.+.+.+.+-..+.|.-.|.-.|.+..+++.+|+.+| |++..+++..+.|+|..+.|++. +++..+++||..|
T Consensus 115 ~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f 188 (448)
T COG2271 115 PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAF 188 (448)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHH
Confidence 377888888899999999999999999999999998 99999999999999999999999 9999999999999
Q ss_pred HHHHHHHH-HHHHHHHhc
Q 012670 107 GIPALFMG-FAIASFFSG 123 (458)
Q Consensus 107 ~i~~i~~~-l~~ii~~~~ 123 (458)
++++++.+ ++++.++..
T Consensus 189 ~~pgiiaiival~~~~~~ 206 (448)
T COG2271 189 YFPGIIAIIVALILLFLL 206 (448)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 99986444 444444443
No 57
>TIGR00898 2A0119 cation transport protein.
Probab=99.44 E-value=2.4e-11 Score=126.65 Aligned_cols=84 Identities=15% Similarity=0.197 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|++.+...|...+++.|++++++ |+++.+++..+..+|.+++|.+++++.+ ||+.|++.
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 67889999999999999999999999999999887 9999999999999999999999877653 99999998
Q ss_pred HHHHHHHHHHHHh
Q 012670 110 ALFMGFAIASFFS 122 (458)
Q Consensus 110 ~i~~~l~~ii~~~ 122 (458)
++..++..+..++
T Consensus 250 ~i~~~~~~~~~~~ 262 (505)
T TIGR00898 250 SLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHHHHh
Confidence 8766655555433
No 58
>PRK09952 shikimate transporter; Provisional
Probab=99.44 E-value=3.5e-11 Score=123.20 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc--------ccccchh
Q 012670 33 VFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ--------DNAGWGL 104 (458)
Q Consensus 33 ~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~--------~~~gw~~ 104 (458)
.+++.+.+.|++.|+..|...+.+.|++|+++ |++..+....+..+|.+++..+.+++. +++|||+
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~ 200 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI 200 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence 57889999999999999999999999999877 999999999999999999887777664 3579999
Q ss_pred hhHHHHHHHH
Q 012670 105 GFGIPALFMG 114 (458)
Q Consensus 105 ~F~i~~i~~~ 114 (458)
.|++.++..+
T Consensus 201 ~f~~~~~~~l 210 (438)
T PRK09952 201 PFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 59
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.44 E-value=7.6e-12 Score=125.06 Aligned_cols=82 Identities=12% Similarity=0.248 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc--------ccccch
Q 012670 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ--------DNAGWG 103 (458)
Q Consensus 32 ~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~--------~~~gw~ 103 (458)
..+++++++.|+|.+...+...+++.|++++++ |+++.++...+.++|.++++++++.+. +.++||
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 357889999999999999999999999999887 999999999999999999999887653 357999
Q ss_pred hhhHHHHHHHHHHHHH
Q 012670 104 LGFGIPALFMGFAIAS 119 (458)
Q Consensus 104 ~~F~i~~i~~~l~~ii 119 (458)
+.|.+.++..+++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 171 IPFLVSAVLVLIGLYL 186 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887755554433
No 60
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.43 E-value=1.9e-11 Score=124.03 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=74.1
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc------cccc
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD------NAGW 102 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~------~~gw 102 (458)
.+...+++.+++.|++.|...|...+.+.+++|+++ |+++++++..+.++|..++|.+++++.+ ..||
T Consensus 94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw 167 (412)
T TIGR02332 94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGW 167 (412)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch
Confidence 367888999999999999999999999999999876 9999999999999999999999999864 4699
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 012670 103 GLGFGIPALFMGFAIASF 120 (458)
Q Consensus 103 ~~~F~i~~i~~~l~~ii~ 120 (458)
|+.|++.++..++..++.
T Consensus 168 r~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 168 QWLFLLEGFPSVILGVMT 185 (412)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999876555443333
No 61
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.42 E-value=2.7e-11 Score=138.51 Aligned_cols=270 Identities=12% Similarity=0.063 Sum_probs=153.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc--------c-
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN--------A- 100 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~--------~- 100 (458)
+.+.+++.+++.|++.+...|...+++.|++++++ |+++++++..+.++|.++||++++++.+. +
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~ 175 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL 175 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 57888999999999999999999999999999877 99999999999999999999999999875 2
Q ss_pred cchhhhHHHHHHHH-HHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccc
Q 012670 101 GWGLGFGIPALFMG-FAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIE 179 (458)
Q Consensus 101 gw~~~F~i~~i~~~-l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (458)
+|++.+.+.++... ++++..+.. ++ .|..++... ++. .
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~------------------~~~----------------~-- 214 (1146)
T PRK08633 176 GRIAPAGLVLLAVAVLGLIFAYRL-PK----VPAAAPEVF------------------DKK----------------K-- 214 (1146)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcC-cC----CCCCCcccc------------------ccc----------------c--
Confidence 34444444333222 222222222 11 111100000 000 0
Q ss_pred cCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HhhcCCCcC
Q 012670 180 HSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQG-MVMDTSIGS 258 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~ 258 (458)
....-...+.. +.+...+.+. ...+...+++.........+.... .....+
T Consensus 215 ~~~~~~~~~~~----------------------~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--- 266 (1146)
T PRK08633 215 YLFPKLLWRNL----------------------KLLRSDRVLW---LAIIGLSYFWFISQLAQANFPAYAKEVLGLD--- 266 (1146)
T ss_pred cccHHHHHHHH----------------------HHHhcCcHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC---
Confidence 00000000000 0000001111 111112222222221111111111 111111
Q ss_pred cccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 012670 259 FTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQ 338 (458)
Q Consensus 259 ~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
.....+++.....+..++...+.++ +.+| ....+.+.++.++.+++++++....
T Consensus 267 ~~~~~g~~~~~~~ig~~~g~~~~g~----l~~r-------~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 320 (1146)
T PRK08633 267 NTFQVQYLLAASAIGIGIGSLLAGR----LSGR-------HIELGLVPLGALGLALSLFLLPTAP--------------- 320 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HhCC-------ceEccchhHHHHHHHHHHHHHHHhh---------------
Confidence 0001222333333333444444444 3343 2223445566666666666655432
Q ss_pred CCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 339 NVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 339 ~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+++++..++.+++.++..+...+++.+.+|++.||.++|+.++...+|..+++.++..+.
T Consensus 321 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 321 ------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred ------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778899999999999999999999999999999999999999999988877776553
No 62
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.41 E-value=1.5e-11 Score=123.64 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc--chhhhH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG--WGLGFG 107 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g--w~~~F~ 107 (458)
+.+.+++.+++.|++.+...|...+++.|++++++ |+++++++....++|..+++.+++.+.+..+ ||+.|+
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 67788999999999999999999999999999876 9999999999999999999999999888766 999999
Q ss_pred HHHHHHHHHH
Q 012670 108 IPALFMGFAI 117 (458)
Q Consensus 108 i~~i~~~l~~ 117 (458)
+.++..++.+
T Consensus 173 ~~~~~~~~~~ 182 (405)
T TIGR00891 173 ISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHH
Confidence 8766544443
No 63
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.41 E-value=4.4e-11 Score=120.54 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++.+++.|++.+...+....+..|.+++++ |+++++++..+..+|..+||.+++++.+..|||+.|++.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 57788899999999999888888889999887765 889999999999999999999999999989999999998
Q ss_pred HHHHHHHHH
Q 012670 110 ALFMGFAIA 118 (458)
Q Consensus 110 ~i~~~l~~i 118 (458)
++..++..+
T Consensus 169 ~~~~~~~~~ 177 (394)
T PRK11652 169 LLLGAGVTF 177 (394)
T ss_pred HHHHHHHHH
Confidence 765544433
No 64
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.41 E-value=7.6e-11 Score=122.45 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc--------ccccchh
Q 012670 33 VFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ--------DNAGWGL 104 (458)
Q Consensus 33 ~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~--------~~~gw~~ 104 (458)
.+.+.+++.|+|.|+..|...+++.|++|+++ |+++.++...+.++|..+|+.++.++. .++|||+
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 47899999999999999999999999999887 999999999988899888886655442 2689999
Q ss_pred hhHHHHHHHHH
Q 012670 105 GFGIPALFMGF 115 (458)
Q Consensus 105 ~F~i~~i~~~l 115 (458)
.|++.++..++
T Consensus 194 ~f~i~~~~~l~ 204 (490)
T PRK10642 194 PFFIALPLGII 204 (490)
T ss_pred HHHHHHHHHHH
Confidence 99997764443
No 65
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.40 E-value=1e-10 Score=125.46 Aligned_cols=87 Identities=24% Similarity=0.407 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc----------
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN---------- 99 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~---------- 99 (458)
+.+.+++++++.|+|.|+..|...+++.+.+|+++ |++.++++.....+|.++++.++.++...
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 67888999999999999999999999999999876 99999999999999999999887665433
Q ss_pred ---ccchhhhHHHHHHHHHHHHHHHh
Q 012670 100 ---AGWGLGFGIPALFMGFAIASFFS 122 (458)
Q Consensus 100 ---~gw~~~F~i~~i~~~l~~ii~~~ 122 (458)
.+||+.|++.++..++.++..++
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999887766665554443
No 66
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.40 E-value=1.1e-10 Score=117.94 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc-ccchhhhHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN-AGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~-~gw~~~F~i 108 (458)
+.+.+++..++.++..+...|...+++.|+++++| |+++.++...+.++|..+|+.+++++.+. .|||..|++
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 45656666667788999999999999999998877 99999999999999999999999999885 599999999
Q ss_pred HHHHHHHHHHHH
Q 012670 109 PALFMGFAIASF 120 (458)
Q Consensus 109 ~~i~~~l~~ii~ 120 (458)
.++..++..+..
T Consensus 167 ~a~~~l~~~l~~ 178 (402)
T PRK11902 167 MAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHH
Confidence 887665554443
No 67
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.40 E-value=4.7e-11 Score=120.24 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++++++.|++.+...+...+++.|.+++++ |++++++++...++|..++|.+++++.+..|||+.|++.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 56677889999999999999999999999998876 999999999999999999999999998889999999998
Q ss_pred HHHHHHHHHH
Q 012670 110 ALFMGFAIAS 119 (458)
Q Consensus 110 ~i~~~l~~ii 119 (458)
++..++..+.
T Consensus 164 ~~~~~i~~~~ 173 (392)
T PRK10473 164 AAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHH
Confidence 8765555544
No 68
>PRK15075 citrate-proton symporter; Provisional
Probab=99.39 E-value=5.1e-11 Score=121.83 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc--------ccccchh
Q 012670 33 VFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ--------DNAGWGL 104 (458)
Q Consensus 33 ~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~--------~~~gw~~ 104 (458)
.+++++++.|++.|...|+..+++.|++|+++ |+++.+++....++|..+|+.+++.+. +.+|||+
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 56889999999999999999999999999887 999999999999999998888887763 4689999
Q ss_pred hhHHHHH
Q 012670 105 GFGIPAL 111 (458)
Q Consensus 105 ~F~i~~i 111 (458)
.|++.++
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9998654
No 69
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.39 E-value=1.5e-11 Score=122.17 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHh-HhhhhccccccchhhhHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISS-SLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp-~l~g~l~~~~gw~~~F~i 108 (458)
+.+.+++.+++.|++.+...|...+++.|++++++ |+++++++..+.++|..++| ++++.+.+..+||+.|++
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 67888999999999999999999999999999876 99999999999999999999 677888888999999998
Q ss_pred HHHHHHHHHHHH
Q 012670 109 PALFMGFAIASF 120 (458)
Q Consensus 109 ~~i~~~l~~ii~ 120 (458)
.++..++..++.
T Consensus 156 ~~~~~~~~~~~~ 167 (379)
T TIGR00881 156 PGIIAIIVSLIC 167 (379)
T ss_pred HHHHHHHHHHHH
Confidence 886555544443
No 70
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.38 E-value=9.1e-11 Score=118.68 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHH-HHHhHhhhhccccccchhhhHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGA-LISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~-~igp~l~g~l~~~~gw~~~F~i 108 (458)
+...+++.+.+.|+|.+...+...+.+.+.+++++ |+++++++..+.++|. .+||++++++.+..||+..++.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 56677888999999998888888888889988776 9999999999999996 6899999999988997766665
Q ss_pred HHH
Q 012670 109 PAL 111 (458)
Q Consensus 109 ~~i 111 (458)
...
T Consensus 178 ~~~ 180 (402)
T TIGR00897 178 ALA 180 (402)
T ss_pred HHH
Confidence 443
No 71
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.36 E-value=4.5e-11 Score=122.34 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhh-ccccccchhhhHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVW-IQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~-l~~~~gw~~~F~i 108 (458)
+...+++.+.+.|++.|...|.....+.|++|+++ |++++++++.+.++|..++|.+.++ +.++.+||+.|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45667788999999999999999999999999887 9999999999999999999887775 4445799999999
Q ss_pred HHHHHHHHHHHH
Q 012670 109 PALFMGFAIASF 120 (458)
Q Consensus 109 ~~i~~~l~~ii~ 120 (458)
.++..++..+..
T Consensus 191 ~~~~~~i~~~~~ 202 (438)
T TIGR00712 191 PAICAIIVALFA 202 (438)
T ss_pred HHHHHHHHHHHH
Confidence 887666654443
No 72
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.36 E-value=1.8e-10 Score=117.60 Aligned_cols=269 Identities=14% Similarity=0.128 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc-------ccccch
Q 012670 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ-------DNAGWG 103 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~-------~~~gw~ 103 (458)
...+++..++.+++.+...+...++..+..++++ +|++..++.....++|..+++.+.+.+. +..|||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 4555666777888888888888899998876533 3899999999999999888776655443 356899
Q ss_pred hhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCc
Q 012670 104 LGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDE 183 (458)
Q Consensus 104 ~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (458)
+.|.+.++..++..++.+...++ +++..+.. ..++
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e----~~~~~~~~-----------------------------------------~~~~ 208 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKE----RYSEIPKN-----------------------------------------IEKK 208 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEe----cCCCCCcc-----------------------------------------cccC
Confidence 99998887666555443333321 11100000 0000
Q ss_pred cchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCc
Q 012670 184 LRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPP 263 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 263 (458)
.+..+.. +.....|.+... .......+..+......... ..+...+ .....
T Consensus 209 ~~~~~~~----------------------~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~ 259 (437)
T TIGR00792 209 LSLKQIF----------------------KALFKNDQLLIL---CLAYLFYNLAFNIKNGVQVY---YFTYVLG-DPELF 259 (437)
T ss_pred CCHHHHH----------------------HHHhCCHHHHHH---HHHHHHHHHHHHHHcchhhe---eEeeecC-ChHHH
Confidence 0000000 000001112111 11122222222211111111 1111111 01111
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+.+..+..+..++..++..+ +.+|. ..++.+..|.++.+++++...+..
T Consensus 260 ~~~~~~~~i~~ii~~~~~~~----l~~r~-------g~~~~~~~~~~~~~~~~~~~~~~~-------------------- 308 (437)
T TIGR00792 260 SYMGSIAIVAGLIGVLLFPR----LVKKF-------GRKILFAGGILLMVLGYLIFFFAG-------------------- 308 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 22333334444555555555 45553 333556777777777766655432
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc-------hhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP-------DAMRSLCSALSLLTTALGNYLSSFILTVVTYFT 409 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~ 409 (458)
.+.+..++..++.+++.+...+...+.+.+.+| ++.+|.+.|++++...+|..+++.+.+.+.+..
T Consensus 309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 309 SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 134455667788899999999999999988876 567899999999999999999999999886543
No 73
>PRK11043 putative transporter; Provisional
Probab=99.36 E-value=1.6e-10 Score=116.80 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.+.+++.+++.|+|.+...+...+++.|++++++ |.+.++......++|..++|.+++++.+++|||+.|++.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 56778889999999998888888999999998776 788899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH
Q 012670 110 ALFMGFAIASFF 121 (458)
Q Consensus 110 ~i~~~l~~ii~~ 121 (458)
++..++..+..+
T Consensus 167 ~~~~~~~~~~~~ 178 (401)
T PRK11043 167 FAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHH
Confidence 776655554443
No 74
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.35 E-value=3.6e-11 Score=124.90 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+++.+++.|++.+...+...+++.|.+++++ |++++++++.+.++|..++|.+++++.+++|||+.|++
T Consensus 106 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~ 179 (496)
T PRK03893 106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI 179 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 367788999999999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 012670 109 PALFMG 114 (458)
Q Consensus 109 ~~i~~~ 114 (458)
.++..+
T Consensus 180 ~~~~~~ 185 (496)
T PRK03893 180 GILPII 185 (496)
T ss_pred HHHHHH
Confidence 655433
No 75
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.33 E-value=4.4e-11 Score=121.71 Aligned_cols=139 Identities=10% Similarity=0.050 Sum_probs=97.1
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012670 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
.+..++.+..++..++..+ +.+|.+ +++.+..+.++.+++..++++.+
T Consensus 266 ~~~~~~~~~~~~~~~~~g~----l~dr~g-------~~~~~~~~~~l~~~~~~l~~~~~--------------------- 313 (420)
T PRK09528 266 YLNSFQVFLEALIMFFAPF----IINRIG-------AKNALLLAGTIMAVRIIGSGFAT--------------------- 313 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhC-------cchhhHHHHHHHHHHHHHHHhcc---------------------
Confidence 3444444445555555555 455543 23456677777777776665532
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHH-HHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSAL-SLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~-~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
++++++...++.+++.....+...+++.+..|++.++...+. +++...+|+.+++.+.+.+.+..
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-------------- 379 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-------------- 379 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh--------------
Confidence 566677788899999988888889999999999999887655 67788999999999998775321
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012670 424 KGHLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
++...|...+++.++..++.+...++
T Consensus 380 --G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 380 --GFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 24567887787777766666554443
No 76
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.32 E-value=9.3e-11 Score=121.31 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc---------cc
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD---------NA 100 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~---------~~ 100 (458)
+...+++.+++.|++.+...+ ....+++++++++ |++++++.....++|..+++.+.+.+.. ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 567778889999999987654 4567899998876 9999999998888898888777765532 25
Q ss_pred cchhhhHHHHHHHHHHHHHHH
Q 012670 101 GWGLGFGIPALFMGFAIASFF 121 (458)
Q Consensus 101 gw~~~F~i~~i~~~l~~ii~~ 121 (458)
|||+.|++.++..++..+..+
T Consensus 196 gWr~~f~i~g~l~l~~~l~~~ 216 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILVL 216 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 899999998876655544433
No 77
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.30 E-value=3.6e-10 Score=110.16 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=74.4
Q ss_pred CCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc-----
Q 012670 25 SATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN----- 99 (458)
Q Consensus 25 ~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~----- 99 (458)
.+...+...+.++..++|.|.+..++..++++++.-++++ +++.+++......+|..+||++++.+...
T Consensus 4 ~~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~ 77 (310)
T TIGR01272 4 AASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDL 77 (310)
T ss_pred hHHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch
Confidence 3455688999999999999999999999999999998876 89999999999999999999999987631
Q ss_pred -----------ccchhhhHHHHHHHHHHHHHH
Q 012670 100 -----------AGWGLGFGIPALFMGFAIASF 120 (458)
Q Consensus 100 -----------~gw~~~F~i~~i~~~l~~ii~ 120 (458)
.+|++.|++.+....+..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 78 SMQVATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999996655444333333
No 78
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=4.5e-11 Score=115.30 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=86.3
Q ss_pred CCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhh
Q 012670 27 TPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGF 106 (458)
Q Consensus 27 ~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F 106 (458)
...+++.++++|.+.|+|.+....+..++++|.|++++ +|++++|+.-..+.+|-.+||+.||.+.|..|++..|
T Consensus 155 fg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF 229 (464)
T KOG3764|consen 155 FGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF 229 (464)
T ss_pred HcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence 34578899999999999999999999999999999876 4999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcce
Q 012670 107 GIPALFMGFAIASFFSGTSLY 127 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~~~~~~~ 127 (458)
++.++++++...+-++..+.+
T Consensus 230 lVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 230 LVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred HHHHHHHHHHHHHHHheeCcc
Confidence 999988888877766655543
No 79
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.29 E-value=6.9e-12 Score=123.27 Aligned_cols=94 Identities=18% Similarity=0.256 Sum_probs=83.2
Q ss_pred CCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc-ch
Q 012670 25 SATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG-WG 103 (458)
Q Consensus 25 ~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g-w~ 103 (458)
...+...+.+.+.|.+.|+|++.+.|..+++++|.|++.+ |+++++++|+++++|..+|.+.+.++.+.-+ ||
T Consensus 115 ~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr 188 (493)
T KOG1330|consen 115 SGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR 188 (493)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence 3444678899999999999999999999999999999887 9999999999999999999999999988766 99
Q ss_pred hhhHHHHHHHHHHHHHHHhcC
Q 012670 104 LGFGIPALFMGFAIASFFSGT 124 (458)
Q Consensus 104 ~~F~i~~i~~~l~~ii~~~~~ 124 (458)
|.|+..+++.++..++.+++.
T Consensus 189 ~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 189 WAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred EEEEeehHHHHHHHHHHHhhc
Confidence 999999987777666654444
No 80
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.28 E-value=6.9e-10 Score=111.74 Aligned_cols=84 Identities=11% Similarity=-0.045 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHHHH
Q 012670 34 FFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFM 113 (458)
Q Consensus 34 ~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~ 113 (458)
+.....+.++..+...+...++..+..++++ ++.+.+.+.++..+|..+|+.+.+++.+++|||..|++.++..
T Consensus 100 ~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~ 173 (390)
T TIGR02718 100 AVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVP 173 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 3444555667788888888888777776655 7778888888889999999999999999999999999998766
Q ss_pred HHHHHHHHhc
Q 012670 114 GFAIASFFSG 123 (458)
Q Consensus 114 ~l~~ii~~~~ 123 (458)
++..+..++.
T Consensus 174 ~~~~~~~~~~ 183 (390)
T TIGR02718 174 LASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHc
Confidence 6655554333
No 81
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.27 E-value=1.1e-09 Score=114.30 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc-----------
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD----------- 98 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~----------- 98 (458)
+...+++++++.|+|.|+..|....++.+.+|+++ |+++.++++...++|.++|+.++.++..
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 187 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 36789999999999999999999999999999987 9999999999999999999988876532
Q ss_pred ------------cccchhhhHHHHHHHHHHHHH
Q 012670 99 ------------NAGWGLGFGIPALFMGFAIAS 119 (458)
Q Consensus 99 ------------~~gw~~~F~i~~i~~~l~~ii 119 (458)
+++||+.|.+.++..++.++.
T Consensus 188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred cccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 248999998877655554443
No 82
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.26 E-value=6.1e-10 Score=110.56 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=66.8
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc--cchhhh
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA--GWGLGF 106 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~--gw~~~F 106 (458)
.+...+++.+++.|+|.+...+.....+.|.++ ++ |+++++++..+.++|..+++.+++++.++. +||+.|
T Consensus 85 ~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f 157 (355)
T TIGR00896 85 PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL 157 (355)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 356777899999999999988888889988885 34 899999999999999999999999987765 399998
Q ss_pred HHHHHHHHH
Q 012670 107 GIPALFMGF 115 (458)
Q Consensus 107 ~i~~i~~~l 115 (458)
.+.++..++
T Consensus 158 ~~~~~~~~~ 166 (355)
T TIGR00896 158 AWWALPALL 166 (355)
T ss_pred HHHHHHHHH
Confidence 876654433
No 83
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.25 E-value=4.2e-10 Score=113.50 Aligned_cols=288 Identities=7% Similarity=0.012 Sum_probs=158.9
Q ss_pred HHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHHHH
Q 012670 34 FFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFM 113 (458)
Q Consensus 34 ~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~ 113 (458)
.+++.++.+++.+...|...++..|.-+ + ++..++......++|.++||.++|.+.+ .+||+.|++.++..
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~ 172 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFA 172 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHH
Confidence 4556677888888888888777665321 1 4567788889999999999999998876 69999999988766
Q ss_pred HHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhhhhcc
Q 012670 114 GFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVV 193 (458)
Q Consensus 114 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (458)
++..+..+...++ +|+++... +. .+ . ..++.+.-+.
T Consensus 173 ~~~~~~~~~~~~~----~~~~~~~~----------~~----~~-~---------------------~~~~~~~~~~---- 208 (396)
T TIGR00882 173 LILMLLLMFAKPK----APSSATVA----------NA----LG-A---------------------NASAFSLKLA---- 208 (396)
T ss_pred HHHHHHHHHhCCC----Cchhhhhh----------cc----cc-c---------------------ccCCCCHHHH----
Confidence 6555443332221 11110000 00 00 0 0000000000
Q ss_pred ccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-HHhhc-CCCcCcccCcCccccchh
Q 012670 194 SDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQ-GMVMD-TSIGSFTIPPASLSSFDV 271 (458)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~-~~~~~-~~~~~~~~~~~~l~~ln~ 271 (458)
.+....|.+...+. ........+.+....+... ....+ ...+ ....+....+..
T Consensus 209 -------------------~~~l~~~~~~~~~l---~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~g~~~~~~~ 264 (396)
T TIGR00882 209 -------------------LELFRQRKFWMFVL---YVVGVACVYDVFDQQFANFFTSFFATPQQG--TRVFGYVTTMGE 264 (396)
T ss_pred -------------------HHHHcCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccccc--hHHHHHHHHHHH
Confidence 00000011111111 1112222222221111111 11111 0100 001122333333
Q ss_pred hhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHH
Q 012670 272 ISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIP 351 (458)
Q Consensus 272 ~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 351 (458)
+..++......+ +.+|. ++++.+.++.++.++++...... .+.+++++
T Consensus 265 i~~~~~~~~~g~----l~~r~-------g~~~~l~~~~~l~~l~~~~~~~~---------------------~~~~~~~~ 312 (396)
T TIGR00882 265 LLNALIMFCAPL----IINRI-------GAKNALLIAGTIMSVRIIGSSFA---------------------TTALEVVI 312 (396)
T ss_pred HHHHHHHHHHHH----HHHHh-------ccchhHHHHHHHHHHHHHHHHhc---------------------CChHHHHH
Confidence 333444444444 44553 33345677777777766654432 25666777
Q ss_pred HHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHH-HHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHH
Q 012670 352 QYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSAL-SLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYF 430 (458)
Q Consensus 352 ~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~-~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
..++.+++.........+++.+..|++.+++..+. ++....+|+.+++.+.+.+.+.. ++...
T Consensus 313 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~----------------G~~~~ 376 (396)
T TIGR00882 313 LKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI----------------GFQGA 376 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc----------------ccHHH
Confidence 88999999888877788888888888888886665 67889999999999999876321 25677
Q ss_pred HHHHHHHHHHHHHHHH
Q 012670 431 FWLLAGLSIFNMLLYV 446 (458)
Q Consensus 431 f~~~a~i~~~~~v~~~ 446 (458)
|.+.+++.++..++..
T Consensus 377 f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 377 YLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877777666543
No 84
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.23 E-value=2e-09 Score=110.08 Aligned_cols=334 Identities=12% Similarity=0.069 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhc--cccc---------
Q 012670 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWI--QDNA--------- 100 (458)
Q Consensus 32 ~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l--~~~~--------- 100 (458)
..+.+++.+.-++.....+...++++|.+|+++. +++.++++.....++|..+|+.++++. .+.+
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 4556666677778888888899999999998761 246899999999999999999999875 2221
Q ss_pred ----cchhhhHHHHHHHHHHHHHHHhcCcceeecCCCC-CchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCC
Q 012670 101 ----GWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGG-SPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGS 175 (458)
Q Consensus 101 ----gw~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (458)
+.|+.|++.++.++++.++..+..++. ++.. +...+ .++...
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~---~~~~~~~~~~-------------~~~~~~----------------- 237 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVKEN---PLIGSDDFIN-------------SEAAPP----------------- 237 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeeecc---CCCccccchh-------------hhcccc-----------------
Confidence 678999999988887777655444432 1111 00000 000000
Q ss_pred cccccCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCC
Q 012670 176 RKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTS 255 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 255 (458)
. +..++-.+.+. ++..++. -|.+.+++..-++..+-|..+....+.++-+..+-..+
T Consensus 238 -~-~~~~~~~~~~i-----------------~~~~~~m----P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~ 294 (477)
T TIGR01301 238 -S-KHGEEAFFGEL-----------------FGAFKYL----PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSV 294 (477)
T ss_pred -c-ccchhhhHHHH-----------------HHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCC
Confidence 0 00000000000 0000000 12233344444444444454444455554432221111
Q ss_pred Cc--CcccC---cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 012670 256 IG--SFTIP---PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLR-- 328 (458)
Q Consensus 256 ~~--~~~~~---~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~-- 328 (458)
-. .++-. ..+-..+|.+... +.+.+..++.+|.+.+ +....++.++.+++++...+......+
T Consensus 295 ~~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g~~------k~~~~~s~~~~~~~l~~~~~i~~~~~~~~ 364 (477)
T TIGR01301 295 NQGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWGAG------KRLWGIVNIILAICLAATVLVTYVAKNSR 364 (477)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccc------hhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 00 01000 1111222222222 3333344455553211 123367888888888887765421000
Q ss_pred HHhhh-cccCCCCCccch-hHHHHHHHHHHhHHHHHhhhhhhhhhhcccch--hhHHHHHHHHHHHHHHHHHHhhHHhhh
Q 012670 329 LAREL-ELVDQNVSVPIS-IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPD--AMRSLCSALSLLTTALGNYLSSFILTV 404 (458)
Q Consensus 329 ~~~~~-~~~~~~~~~~~s-~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~--~~~g~~~g~~~~~~~ig~~ig~~l~~~ 404 (458)
..+.+ +.+. .+.. .+..+....+.|+.-......=++++.+..|+ +..|.++|+.|++..+...+.....+.
T Consensus 365 ~~~~~~~~~~----~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 365 YYDGDGESLP----PPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred cccccccccC----cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 00000 0110 0112 35667788999999999999999999999995 455999999999999999999887777
Q ss_pred hhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012670 405 VTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYK 453 (458)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~ 453 (458)
+.+..+ ++....+.+-++.++++++..++..+|.+
T Consensus 441 ~~~~~g--------------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 441 WDQLFG--------------GGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHcC--------------CCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 543322 12235567777777777777766655544
No 85
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.21 E-value=1.5e-09 Score=110.41 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=100.1
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012670 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
..++.+..++...+.++ +.+| +++++.+.++.++.++++..+..... ...++
T Consensus 257 ~~~~~i~~i~~~~~~g~----l~dr-------~g~r~~l~~~~~~~~v~~~l~~~~~~-----------------~~~~~ 308 (418)
T TIGR00889 257 MSLSQFSEIFFILTIPF----FLKR-------FGIKKVMLLSLVAWALRFGFFAYGDP-----------------EYFGY 308 (418)
T ss_pred HHHHHHHHHHHHHHHHH----HHHH-------hCcHHHHHHHHHHHHHHHHHHHHcCc-----------------chhhH
Confidence 33344444444444444 4555 34446677888877777666654210 01123
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHH-HHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012670 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSL-LTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~-~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
+.+++..++.+++++...+....++.+..|++.||..+|+.+ ...++|..+|+.+.+.+.+.... .+..
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~----------~~~~ 378 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA----------YGTF 378 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc----------ccCC
Confidence 445667899999999999999999999999999999999997 67899999999999987643210 0001
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012670 426 HLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
+++..|.+.+++.++..+.++++.++-
T Consensus 379 ~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 379 DWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 356778888877777777666655533
No 86
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.20 E-value=2.4e-09 Score=109.23 Aligned_cols=270 Identities=13% Similarity=0.088 Sum_probs=165.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc-------cc
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA-------GW 102 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~-------gw 102 (458)
....+++..++..++...+.....++..|..++++ +|.+..++.....++|.++...+.+.+.+.. +|
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~ 176 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY 176 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence 34445777777899999999999999999998754 3999999999999999876665555543321 68
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCC
Q 012670 103 GLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSD 182 (458)
Q Consensus 103 ~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (458)
++.+.+.++...+..++..+..|+-.++.++++ +
T Consensus 177 ~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~----------------------------------------------~ 210 (428)
T PF13347_consen 177 RWMALVLAIVGLVFFLITFFFVKERSVEVTEQE----------------------------------------------K 210 (428)
T ss_pred HHHHHHHHHHHHHHhhhhhheeeeccccccccc----------------------------------------------c
Confidence 998888887666666665544443000000000 0
Q ss_pred ccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHh-hcCCCcCccc
Q 012670 183 ELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMV-MDTSIGSFTI 261 (458)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~ 261 (458)
+.++.+..+ ..++ .|.+.. ++......+.......+.+.....+ ++.. +
T Consensus 211 ~~~~~~~~~----------------~~~~------nr~~~~---l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~----~- 260 (428)
T PF13347_consen 211 KISLRDSLR----------------SLFR------NRPFRI---LLLAFFLQWLAFALMNTFLPYYFTYVLGNE----G- 260 (428)
T ss_pred ccccccchh----------------hhcc------cchHHH---HHHHHHHHHhhhhhhhhHHHHHHHHHhcCc----h-
Confidence 000111100 0001 111211 2222333333333222222222111 1111 1
Q ss_pred CcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 012670 262 PPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVS 341 (458)
Q Consensus 262 ~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
..+.+..+..+..++..|+..+ +.+|.+++ +.+..+.++.+++.++..+...
T Consensus 261 ~~~~~~~~~~~~~~v~~~~~~~----l~~r~gk~-------~~~~~~~~~~~~~~~~~~~~~~----------------- 312 (428)
T PF13347_consen 261 LISIFMLIFFVASIVGSPLWGR----LSKRFGKK-------KVYIIGLLLAALGFLLLFFLGP----------------- 312 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----HHHHccce-------eehhhhHHHHHHHHHHHHHHHh-----------------
Confidence 1122233334444455555555 55554333 4567788888887777766531
Q ss_pred ccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccch-------hhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc
Q 012670 342 VPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPD-------AMRSLCSALSLLTTALGNYLSSFILTVVTYFTT 410 (458)
Q Consensus 342 ~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~-------~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~ 410 (458)
.+.+++++..++.+++.+.......+...|..+. +..|.+.|++++...++..+++.+.+.+.....
T Consensus 313 --~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 313 --GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred --hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 2678888999999999999999999999998884 457999999999999999999999998866543
No 87
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.19 E-value=2.4e-09 Score=108.88 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc-----c-----
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ-----D----- 98 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~-----~----- 98 (458)
.++..+++.+++.|++ |...+.....++++||+++ |+++++++....|+|..+++++++.+. +
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~ 198 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN 198 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4688999999999998 6678889999999999887 999999998778888877666655432 1
Q ss_pred --------cccchhhhHHHHHHHHHHHHHHHhcC
Q 012670 99 --------NAGWGLGFGIPALFMGFAIASFFSGT 124 (458)
Q Consensus 99 --------~~gw~~~F~i~~i~~~l~~ii~~~~~ 124 (458)
..+||.++++-.+..++..+.+++..
T Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~ 232 (462)
T PRK15034 199 GVPQADGSVMSLANAAWIWVPLLAIATIAAWSGM 232 (462)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34577777777666655555544443
No 88
>PRK09848 glucuronide transporter; Provisional
Probab=99.17 E-value=5.3e-09 Score=107.36 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=72.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
.+.++.+.+|.++.+++++.+.+.. ..+.++.++..++.++|+++..+...+...+.+|++
T Consensus 291 ~g~~~~~~~g~~~~~i~~~~~~~~~-------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~ 351 (448)
T PRK09848 291 IGKKNTFLIGALLGTCGYLLFFWVS-------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYG 351 (448)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4445667888888888776665421 124555667788999999999999999999998865
Q ss_pred -------hHHHHHHHHHHHHHHHHHHhhHHhhhhhhhh
Q 012670 379 -------MRSLCSALSLLTTALGNYLSSFILTVVTYFT 409 (458)
Q Consensus 379 -------~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~ 409 (458)
.+|.+.|++++.+.+|..+|+.+.+.+....
T Consensus 352 ~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 352 EYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4699999999999999999999998876543
No 89
>PRK10133 L-fucose transporter; Provisional
Probab=99.15 E-value=4.6e-09 Score=107.48 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=54.2
Q ss_pred CchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc
Q 012670 28 PAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ 97 (458)
Q Consensus 28 ~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~ 97 (458)
..+...+++++++.|+|.|...+..++.+.|..++++ |...++++.....+|..+||++++.+.
T Consensus 114 a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477889999999999999999999999998755443 666789999999999999999987653
No 90
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.14 E-value=1.1e-09 Score=113.00 Aligned_cols=285 Identities=15% Similarity=0.108 Sum_probs=159.9
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHH
Q 012670 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPA 110 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~ 110 (458)
.....+.+.+.+++.+...+...+++.|..+ |+. ..++...++.|.+.++|.++|+.++|++.++++|+..|++.+
T Consensus 120 ~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a 195 (468)
T TIGR00788 120 AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITA 195 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 3344457889999999999999999999998 431 235567788889999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhhh
Q 012670 111 LFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKA 190 (458)
Q Consensus 111 i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (458)
...++..+..++.+++.+..+|+.+.. +...+ . ..+. ...+..
T Consensus 196 ~l~ll~~~~~~~~~E~~~~~~~~~~~~-~~~~~----~----------------------------~~~~----~~~~~~ 238 (468)
T TIGR00788 196 ALLLLQLFVSNLSKERRAFVRPRIGTY-LEMNM----A----------------------------LLTL----GVLANV 238 (468)
T ss_pred HHHHHHHHHHHhccccccccccccccc-chhhh----h----------------------------hhhh----hHHHHH
Confidence 766666444444332100001110000 00000 0 0000 000000
Q ss_pred hccccccccCCCCCCCcccccchhhHHH------HHHHHHHHHHHHHHH-HHHHHhhcchhHHHHHHhhcCCCcCcccCc
Q 012670 191 AVVSDAEIKSGDFSNPWILCTVTQVEEL------KILIRMFPIWATGIV-FSAVYAQMSTLFVEQGMVMDTSIGSFTIPP 263 (458)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~l~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 263 (458)
.++..+. +.+...+. +..+ +........+.+..+. + . ...++
T Consensus 239 ---------------------~~~~~~l~~~l~~~~i~~~l~---fifl~~~~~~~~~~~~f~~~~---~-~---lG~s~ 287 (468)
T TIGR00788 239 ---------------------KVQILGLRGAIQLLEIAKPLI---FIFLSYANLPGASGSVFCATT---Q-C---LPGGP 287 (468)
T ss_pred ---------------------HHHHHHHHHHHhcHHHHHHHH---HHHHHHhhcCCCCceeEEEEc---c-c---CCCCc
Confidence 0000011 11111111 1111 1111111111111100 0 1 12223
Q ss_pred Cc---cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 012670 264 AS---LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNV 340 (458)
Q Consensus 264 ~~---l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
.. +....++..++...+.++ +.+| .+.++.+.++.++.+++.......... -+ ...|
T Consensus 288 ~~~G~~~~~~~v~~i~g~~~~~~----~~~~-------~~~r~~l~~~~~l~~~~~~~~~~l~~~-~~--~~~g------ 347 (468)
T TIGR00788 288 SFSGMSKVVGNLGSLCGVGGYDR----FLKT-------FPYRLLFGVTTLLYTLSSLFDLILVKR-WN--LAFG------ 347 (468)
T ss_pred chhhhHHHHHHHHHHHHHHHHHH----HHhh-------CCHHHHHHHHHHHHHHHHhCceeeeec-cc--cccC------
Confidence 22 223333333444444444 2233 566677788888777766443211100 00 0000
Q ss_pred CccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhh
Q 012670 341 SVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFT 409 (458)
Q Consensus 341 ~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~ 409 (458)
..+.++.....++.+++.++...+.+.++.+.+|++.+|+..++.....++|..+++.+++.+.+..
T Consensus 348 --i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 348 --ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred --CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0123345556788999999999999999999999999999999999999999999999888887543
No 91
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.13 E-value=2.6e-09 Score=104.44 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc---chhhh
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG---WGLGF 106 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g---w~~~F 106 (458)
+.+.+++..+++|++.|- .....+.++.+||+|+ ++.+++++. .-|+|..+...+++++....| ||.+-
T Consensus 104 ~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~ 175 (417)
T COG2223 104 STWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVA 175 (417)
T ss_pred chHHHHHHHHHHhcccce-ehcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 346888888999998776 5667788999999987 899999999 999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCcc
Q 012670 107 GIPALFMGFAIASFFSGTSL 126 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~~~~~~ 126 (458)
.+..+.++++.+.+++..++
T Consensus 176 ~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 176 GIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 98888888888777666653
No 92
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.09 E-value=2.2e-08 Score=102.79 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=76.6
Q ss_pred CchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhc------ccccc
Q 012670 28 PAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWI------QDNAG 101 (458)
Q Consensus 28 ~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l------~~~~g 101 (458)
..+.+.+++-++++|+.++...|+....++.+|.++| |+.-+++++.+.++|..+|.+++..+ ....|
T Consensus 131 ~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g 204 (495)
T KOG2533|consen 131 VHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG 204 (495)
T ss_pred HhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence 4578899999999999999999999999999999887 99999999999999999999999875 34579
Q ss_pred chhhhHHHHHHHHHHHHHH
Q 012670 102 WGLGFGIPALFMGFAIASF 120 (458)
Q Consensus 102 w~~~F~i~~i~~~l~~ii~ 120 (458)
|||.|.+.+++.++..++.
T Consensus 205 W~~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 205 WRWLFIIEGVITLVLGIVV 223 (495)
T ss_pred ceeehhHHHHHHHHHHheE
Confidence 9999999997666555443
No 93
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.08 E-value=4.6e-08 Score=96.00 Aligned_cols=272 Identities=10% Similarity=0.087 Sum_probs=155.6
Q ss_pred CCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhh
Q 012670 27 TPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGF 106 (458)
Q Consensus 27 ~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F 106 (458)
...+......+.++.|+|.+...+...++++|..+||+ |+++.++.|...-+|..++.++.|.+-+.++-.-..
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~ 158 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLI 158 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence 33455566677788999999999999999999999987 999999999999999999999999888877643222
Q ss_pred HH----HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCC
Q 012670 107 GI----PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSD 182 (458)
Q Consensus 107 ~i----~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (458)
-+ +.+.+.+.++-.+-.+++..+ .... +..+
T Consensus 159 ~v~~~~a~i~~~l~~ia~wg~E~r~~~--~~~~-------------------------------------------~~~~ 193 (403)
T PF03209_consen 159 QVIQGVALIALLLNLIALWGQEPRRSR--RAAA-------------------------------------------AERP 193 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcc--cccC-------------------------------------------CCCC
Confidence 22 122222222222111111000 0000 0000
Q ss_pred ccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcC--cc
Q 012670 183 ELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGS--FT 260 (458)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~--~~ 260 (458)
+..+.+.... ...+ .+.++++.+ .+..++-+..... ++ .-+++ +.
T Consensus 194 ~~~f~~a~~~-----------------~~~~--~~a~~f~~f---l~l~t~a~~~QD~-----iL------EPygg~Vfg 240 (403)
T PF03209_consen 194 RPPFREAWRQ-----------------VWAS--PQARRFFVF---LFLGTLAFFMQDV-----IL------EPYGGEVFG 240 (403)
T ss_pred CccHHHHHHH-----------------HHhC--CChhHHHHH---HHHHHHHHHhhHH-----Hc------CCchhHHcC
Confidence 0111111000 0000 112322221 1112221111110 11 01111 22
Q ss_pred cCcCccccchh---hhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 012670 261 IPPASLSSFDV---ISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVD 337 (458)
Q Consensus 261 ~~~~~l~~ln~---~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
++++.-.-+|+ .-+++...+..++ ..|. .++.+...+|..+.++++.+.......
T Consensus 241 msv~eTT~Lta~~~~G~L~G~~~~g~~----l~~~------~~~~~~a~~G~~~~~~~f~lii~a~~~------------ 298 (403)
T PF03209_consen 241 MSVGETTRLTAFWGGGTLLGMLLAGFL----LSRR------LGKKRTAALGCLLGALAFALIILAGPL------------ 298 (403)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC------CCchHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 33332222222 2233333333432 2221 222233445666666666555443211
Q ss_pred CCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc
Q 012670 338 QNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTT 410 (458)
Q Consensus 338 ~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~ 410 (458)
-+.+.+....++.|+|.++......+...+.++++..|..+|.|...++++..++..+++.+.+..+
T Consensus 299 ------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 299 ------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred ------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2567788899999999999999999999999999999999999999999999999999998877543
No 94
>PRK09669 putative symporter YagG; Provisional
Probab=99.06 E-value=3.7e-08 Score=101.02 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc-------hhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP-------DAMRSLCSALSLLTTALGNYLSSFILTVVTYFTT 410 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~ 410 (458)
+.+.+++..++.++|++...+...+.+.|.+| ++..|...+.+.+...+|..+|+.+.+.+.+...
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556667789999999999999999999886 3456788999999999999999999998866543
No 95
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.05 E-value=2.3e-09 Score=106.58 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc----------c
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD----------N 99 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~----------~ 99 (458)
+.+.+++++++.|++.+.. +...+.++|++++++ |+++++++....++|..+++.+++.+.+ +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 6778889999999997765 557889999998876 9999999999999999988888877654 3
Q ss_pred ccchhhhH-HHHHHH
Q 012670 100 AGWGLGFG-IPALFM 113 (458)
Q Consensus 100 ~gw~~~F~-i~~i~~ 113 (458)
.+||+.|+ +.++..
T Consensus 163 ~~w~~~~~~~~~~~~ 177 (366)
T TIGR00886 163 LAWGWAFVIVPAGIL 177 (366)
T ss_pred ccccchhHHHHHHHH
Confidence 48999994 434433
No 96
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.04 E-value=1.3e-08 Score=106.02 Aligned_cols=318 Identities=13% Similarity=0.039 Sum_probs=165.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+..+..+.|+|.|... +....++|..|.+. |..++.+..+..-+...++|.++..+..+-+|||.|++.
T Consensus 130 ~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~ 202 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF 202 (599)
T ss_pred cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence 77788999999999987776 45666899998765 776766666665555557777777777677999999999
Q ss_pred HHHHHHHHHHHHhcCcceeec--CCCCCc----h--hhHHHHHHHHHHhhccccCCCc-chhhhccchhhhccCCccccc
Q 012670 110 ALFMGFAIASFFSGTSLYRFQ--RPGGSP----I--TRMCQVLVASFRKWNLEVPNDS-TLLYETQDKASAIEGSRKIEH 180 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~~~~~~--~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 180 (458)
++...++++..+++.+.-++. +.++.+ + .|+.+.+...........+.+- ...+ +++.+
T Consensus 203 ~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~------------~~W~S 270 (599)
T PF06609_consen 203 IIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPY------------YPWKS 270 (599)
T ss_pred HHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCC------------CCCCC
Confidence 987777776644333221111 111111 1 3455555555543322222110 0000 11111
Q ss_pred CCccchhhhhhccccccccCCCCCCCccccc--chhh------HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhh
Q 012670 181 SDELRCLDKAAVVSDAEIKSGDFSNPWILCT--VTQV------EELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVM 252 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v------~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~ 252 (458)
...+.-+-.......... .||.+. +++. ++.|.+... .....+.-+.|.....++..+..++
T Consensus 271 a~VIa~lviG~~~Lv~F~-------~wE~~~~~~~Pl~P~~Lf~~~r~~~~~---lvi~fi~G~~~~s~~~l~p~~~~~v 340 (599)
T PF06609_consen 271 AHVIAPLVIGFVLLVAFV-------VWEWFGAPKDPLFPHRLFKDRRGFAAL---LVISFISGMNFFSVNILWPQQVVNV 340 (599)
T ss_pred ccchhhHHHHHHHHHHHH-------HhhhhccCCCCcCCHHHhccchHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111111100000000000 111110 1111 112222111 1122222222333333344433222
Q ss_pred c-CCCcCcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012670 253 D-TSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLAR 331 (458)
Q Consensus 253 ~-~~~~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~ 331 (458)
- .+..+. ...+++.....+...+.+.+... +.++. .+.++.+.+|.+++.+++..+.....
T Consensus 341 f~~d~~~~-~~~~~~s~~~~fg~~~g~~i~g~----l~~~i------r~~Kw~li~~~~~~ta~~Gama~~~~------- 402 (599)
T PF06609_consen 341 FGSDPISI-TEIGWISSPVGFGSCAGAVILGL----LFSKI------RHIKWQLIFGSVLMTAFCGAMAAVRP------- 402 (599)
T ss_pred ccCCCccc-ceeehhhhhHHHHHHHHHHHHHH----HHHHc------cchhHHHHHHHHHHHHHHHHHHHccC-------
Confidence 1 110000 01234444444444444444333 33332 12345667777776665555544321
Q ss_pred hhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 332 ELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 332 ~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+ ..+.+ +...++.++|.+.+..+....+.-..|++.-|..+|+....+.+|+.+|..+...+.
T Consensus 403 ---------~-n~~~~--i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 403 ---------D-NKNAA--IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred ---------C-CcchH--HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0 11222 344567778888888888888888899999999999999999999999998886653
No 97
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.01 E-value=2.3e-08 Score=101.40 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=70.4
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc----------
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD---------- 98 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~---------- 98 (458)
.+.+.+++++++.|+|.|..++..++.+.+..++++ |++..++.....++|..+||.+++.+..
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 467888999999999999999999999999887765 8889999999999999999999987742
Q ss_pred ----------------cccchhhhHHHHHHHHHHHH
Q 012670 99 ----------------NAGWGLGFGIPALFMGFAIA 118 (458)
Q Consensus 99 ----------------~~gw~~~F~i~~i~~~l~~i 118 (458)
..+||+.|.+.++..++..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24699999987765544433
No 98
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.01 E-value=7.2e-08 Score=102.93 Aligned_cols=90 Identities=17% Similarity=0.157 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc---------
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA--------- 100 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~--------- 100 (458)
....+++++++.|+|.++..|...+++.|.+++++ |+.++++++.+..+|..+|++++|++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 35677899999999999999999999999999887 999999999999999999999999987643
Q ss_pred -------------cchhhhHHHHHHHHHHHHHHHhcCc
Q 012670 101 -------------GWGLGFGIPALFMGFAIASFFSGTS 125 (458)
Q Consensus 101 -------------gw~~~F~i~~i~~~l~~ii~~~~~~ 125 (458)
+||..|++.+++.++..+.+++..+
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~ 282 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPK 282 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2777899888766665554444433
No 99
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.91 E-value=3.4e-08 Score=95.12 Aligned_cols=286 Identities=13% Similarity=0.106 Sum_probs=156.0
Q ss_pred CCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc---cccc
Q 012670 26 ATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD---NAGW 102 (458)
Q Consensus 26 ~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~---~~gw 102 (458)
+.+.+.+.+..+|++.|+..|- -..+.+.++|.+++|+ |+.+++.+..+..+|..+||.+|||+.+ ..|-
T Consensus 116 ~~S~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~ 188 (451)
T KOG2615|consen 116 ALSRNFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGS 188 (451)
T ss_pred HHHHHHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhcc
Confidence 3444666777779999998876 4567899999999977 9999999999999999999999999988 3343
Q ss_pred hhhhHHHHHHHHHHHH--H-H-HhcCcceeecCCCC---CchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCC
Q 012670 103 GLGFGIPALFMGFAIA--S-F-FSGTSLYRFQRPGG---SPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGS 175 (458)
Q Consensus 103 ~~~F~i~~i~~~l~~i--i-~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (458)
.+-++.+-...+++.. . + ++..+.... ++++ .++.+.. +.
T Consensus 189 ~p~alP~~~v~i~a~~~v~~~~~~lpETL~~-rk~~~~~~~~~~~~-------------------------~~------- 235 (451)
T KOG2615|consen 189 YPFALPCLLVFILAAGDVTFFPWFLPETLPL-RKRNDEHSTLQEAA-------------------------DD------- 235 (451)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhCCccccc-hhhcccccchhhhh-------------------------hh-------
Confidence 3333323332222222 2 2 222222211 1111 0000000 00
Q ss_pred cccccCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhh-cC
Q 012670 176 RKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVM-DT 254 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~-~~ 254 (458)
+ ..-.+.+|+...... +++- ..+.++..+. .-..++.|....+.+....... +.
T Consensus 236 -~-~~~~~~~~~~~v~~l----------rn~p---~~~~i~~~~i----------~~l~~~ly~~l~s~~~~t~~~l~~~ 290 (451)
T KOG2615|consen 236 -R-LALLKFARIFKVAAL----------RNPP---LLDFISVLRI----------FGLHYFLYLELFSGLENTVLFLTHG 290 (451)
T ss_pred -h-hhhcchhhhhhhhhh----------cCcc---ccchHHHHHH----------HHHHHHHHHHHHHHHHhhHHHhhcC
Confidence 0 001111222221100 0000 0011111111 1112222333333221111111 11
Q ss_pred CCcCcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012670 255 SIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELE 334 (458)
Q Consensus 255 ~~~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~ 334 (458)
.++-.....+.+....++...+.+-. ..|..+|..+. .......++.++.-.+.++....
T Consensus 291 rfg~ss~~~G~vl~~tGl~m~~~ql~----~~~~l~~~~~~-----~~a~l~~~l~~~vP~~llls~~~----------- 350 (451)
T KOG2615|consen 291 RFGYSSMQQGKVLSTTGLLMLVIQLA----LVPILPRYKGN-----IKAVLLFSLLLIVPAFLLLSLAR----------- 350 (451)
T ss_pred ccCCChhhheeeeehhhHHHHHHHHh----ccccccccccc-----hhhHHHHHHHHHHHHHHHHhccc-----------
Confidence 11111223344444445444444422 23344443322 22334444444444444444331
Q ss_pred ccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 335 LVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 335 ~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
....+..+..+.++......+....++.+..|++.||...|+.....+++.++||++.+.+.
T Consensus 351 ----------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 351 ----------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred ----------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 33556778899999999999999999999999999999999999999999999999998765
No 100
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.88 E-value=2.9e-07 Score=95.29 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc-------hhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP-------DAMRSLCSALSLLTTALGNYLSSFILTVVTYFT 409 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~ 409 (458)
+.+.+++..++.+++.+...+...+++.+.+| ++..|.+.|.+.+..-+|..+++.+.+.+.+..
T Consensus 323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44556667788999999999999999999977 455677999999999999999999998876544
No 101
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.88 E-value=1.5e-07 Score=91.66 Aligned_cols=293 Identities=12% Similarity=0.091 Sum_probs=168.0
Q ss_pred CCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc------
Q 012670 26 ATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN------ 99 (458)
Q Consensus 26 ~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~------ 99 (458)
+.......|++++.++|.|-+..++..++++++..++++ ..+-+++......+|+++||++++++.++
T Consensus 99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~ 172 (422)
T COG0738 99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM 172 (422)
T ss_pred hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 566689999999999999999999999999999998875 45567888888999999999999998773
Q ss_pred -------------ccchhhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhcc
Q 012670 100 -------------AGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQ 166 (458)
Q Consensus 100 -------------~gw~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (458)
-.|++.|.+.+....+..+.....+ +.+.++..+.
T Consensus 173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k--~p~~~~~~~~------------------------------ 220 (422)
T COG0738 173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSK--LPDLQVAAPS------------------------------ 220 (422)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc--CCcCCccccc------------------------------
Confidence 2377777776654444443333322 1111111100
Q ss_pred chhhhccCCcccccCCccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchh-H
Q 012670 167 DKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTL-F 245 (458)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~-~ 245 (458)
..++. .....+..+... ..+.......|...+..... +
T Consensus 221 ----------~~~~~------------------------------~~~~~~l~~~~~-~~~gvl~~FlYVG~Eva~gsfl 259 (422)
T COG0738 221 ----------LGASG------------------------------SAGLSSLFQNKH-LRLGVLAIFLYVGAEVAIGSFL 259 (422)
T ss_pred ----------ccccc------------------------------cchHHHHHhChH-HHHHHHHHHHHHhHHHHHHHHH
Confidence 00000 000001111111 11222333344443333322 2
Q ss_pred HHHHHh-hcCCCcCcccCcCccccchhhhHHHHHhhhhh-hhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 012670 246 VEQGMV-MDTSIGSFTIPPASLSSFDVISVIFWVPIYDK-IIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVE 323 (458)
Q Consensus 246 ~~~~~~-~~~~~~~~~~~~~~l~~ln~~~vi~~~pl~~~-~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~ 323 (458)
+..... .+.+ +. +..+.......+-..+| +..++.+| +++.+-+..-.+...+-++...+.
T Consensus 260 ~~y~~~~~g~~----~~-----~aa~~~s~~~~~~~vGRFig~~lm~~-------~~~~k~Laf~a~~~ill~~~~~l~- 322 (422)
T COG0738 260 VSYLEELLGLN----EQ-----QAAYYLSFFWVGFMVGRFIGSALMSR-------IKPEKYLAFYALIAILLLLAVALI- 322 (422)
T ss_pred HHHHHhcCCcc----HH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-------hCHHHHHHHHHHHHHHHHHHHHHh-
Confidence 222211 1111 11 11222222222222233 34446665 455554444333322222222222
Q ss_pred HHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhh
Q 012670 324 INRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILT 403 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~ 403 (458)
+-.+.+....+.|+.....+|+..+...+..| ......+....+..+|+.+-|.+.+
T Consensus 323 ---------------------~g~v~~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G 379 (422)
T COG0738 323 ---------------------GGVVALYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQG 379 (422)
T ss_pred ---------------------cChHHHHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHH
Confidence 22455667888999999999999999999999 5555666677777888888888888
Q ss_pred hhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012670 404 VVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYK 453 (458)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~ 453 (458)
.+.+.. +....+.....+|.+-.+.+.++.++.|
T Consensus 380 ~i~d~~----------------g~~~~~~~~pllc~lyV~~~~~~~~~~k 413 (422)
T COG0738 380 VIADMF----------------GIQLTFLIVPLLCYLYVLFFALIGKKSK 413 (422)
T ss_pred HHHHhh----------------hhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 776432 1234455566777777777777776665
No 102
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.85 E-value=1.9e-06 Score=88.71 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+.+.+.+.-++.|+..+-..+.+-++..+..|++..+...|++.+..-....+||.+.+.+.+.+.
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-------------- 444 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-------------- 444 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 445566677789999999999999999999999999999999999999999999999999986542
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 012670 425 GHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 457 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~~~ 457 (458)
+..+.+..+.++.+++.++++.+.....++++
T Consensus 445 -~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~~A 476 (477)
T PF11700_consen 445 -SQRYGFLFLLVLFLIGLILLFFVDVEKGREDA 476 (477)
T ss_pred -CchhHHHHHHHHHHHHHHHHhhccchhhhhcc
Confidence 23455667777777777777665555544443
No 103
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.85 E-value=4.5e-07 Score=92.19 Aligned_cols=342 Identities=12% Similarity=0.081 Sum_probs=178.7
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhh--hccccccchhhh
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIV--WIQDNAGWGLGF 106 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g--~l~~~~gw~~~F 106 (458)
.+..++.+++++.|+..|........++++.-|++- |+..-.....+.++|.++|.+++- .++..-.|++.+
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~ 187 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLL 187 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHH
Confidence 377889999999999999999999999999999987 999999999999999999976662 455666799999
Q ss_pred HHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccch
Q 012670 107 GIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRC 186 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (458)
.++.+..++.++...+..+.-+.---+++...+..+.++.-... .. +.....+. ..+ .-.+..+..++.++
T Consensus 188 ~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~---~~--~~~~~e~~-~~e---~~~~~~~~~~~~sl 258 (485)
T KOG0569|consen 188 AFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGK---ED--VEAEIEEM-LRE---IEEEELEKKKQISL 258 (485)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCC---Cc--chhHHHHH-HHH---HHHhccccccCCcH
Confidence 99888666666655443321100000112222222211111110 00 00000000 000 00000000011111
Q ss_pred hhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH--HHHHhhcCCCcCcccCcC
Q 012670 187 LDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFV--EQGMVMDTSIGSFTIPPA 264 (458)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~ 264 (458)
.+ +.+.+..++.+.+ . +.....+|+..... .+....-.+. |+....+
T Consensus 259 ~~--------------------------~~~~~~lR~~~~i--~--~~v~~~qq~sGi~ai~~Yst~i~~~a-G~~~~~a 307 (485)
T KOG0569|consen 259 RQ--------------------------LLKNPTLRRPLLI--G--IVVSFAQQFSGINAIFFYSTSIFKTA-GFTPEEA 307 (485)
T ss_pred HH--------------------------HhcCcchhHHHHH--H--HHHHHHHHhcCcceeHHHHHHHHHHc-CCCHHHH
Confidence 11 1111111112111 1 11111233332111 1111100111 1111111
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012670 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
...+.....+-+...+. ...+.+|+++ +..+..+..++.+..+.+......... .+ ++
T Consensus 308 ~~an~~~g~v~~~~t~~---~~~lid~~gR-------RpLll~~~~~~~~~~~~~~~~~~l~~~----~~--------~~ 365 (485)
T KOG0569|consen 308 QYANLGIGIVNLLSTLV---SPFLIDRLGR-------RPLLLISLSLMAVALLLMSIALFLSNS----FG--------SW 365 (485)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhcCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHH----hh--------hH
Confidence 12121111111122111 1224555433 356777777777776666655433211 00 01
Q ss_pred hhHHHHHHHHHHhHHHHHh-hhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCT-FIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~-~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
-.+..+.+.++..++..+- .|..+-+..+..|++.|..++......+-+.+.+-......+++..+
T Consensus 366 ~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g------------- 432 (485)
T KOG0569|consen 366 LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG------------- 432 (485)
T ss_pred HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 1122344555555554444 68899999999999999999999999999999988887777764321
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012670 424 KGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
.+.|.++++.+.+..+..++..+-.|.|
T Consensus 433 ----~~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 433 ----PYVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred ----chhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 2557777777777777666665555544
No 104
>PRK11462 putative transporter; Provisional
Probab=98.82 E-value=1.6e-06 Score=89.38 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc-------ccch
Q 012670 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN-------AGWG 103 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~-------~gw~ 103 (458)
...+++.-++..++.........++..+..++.+ +|.+..++.....++|..+++.+...+.+. .||+
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~ 183 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ 183 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 3445556666788888888899999999987654 399999999999999988887775443332 3577
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 012670 104 LGFGIPALFMGFAIASFFS 122 (458)
Q Consensus 104 ~~F~i~~i~~~l~~ii~~~ 122 (458)
....+.++...++..+.+.
T Consensus 184 ~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 184 GGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7666666554444444333
No 105
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.81 E-value=8e-07 Score=85.55 Aligned_cols=85 Identities=22% Similarity=0.377 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc-cchhhhHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA-GWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~-gw~~~F~i 108 (458)
+...++.+..+.|.|-+.......+.+.+.||++ -+..+++|..++++|+.+++.++..+.++. |||....+
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 5677899999999999999999999999999875 588999999999999999999999999887 79997777
Q ss_pred HHHHHHHHHHHHH
Q 012670 109 PALFMGFAIASFF 121 (458)
Q Consensus 109 ~~i~~~l~~ii~~ 121 (458)
=+...++++++++
T Consensus 171 WAl~allAl~~Wl 183 (395)
T COG2807 171 WALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHh
Confidence 6766666666543
No 106
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.72 E-value=2.2e-06 Score=86.45 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=89.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
++..+.+.++.+..++=..++...+. +....+..+.+.+.++|+..++....+..++.+.+|++
T Consensus 270 ~g~~~ll~~a~~~~~vR~~l~a~~~~----------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~ 333 (400)
T PF03825_consen 270 FGIKWLLLLALVAYAVRWLLYAYFSD----------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE 333 (400)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcC----------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc
Confidence 66667788888887777766665420 00011122344567899999999999999999999999
Q ss_pred hHHHHHHHHHHH-HHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012670 379 MRSLCSALSLLT-TALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 379 ~~g~~~g~~~~~-~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
.|+..++++... .++|..+|..+++.+.+....+. ...+...|.+.+++.++..+++++..|+.
T Consensus 334 ~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~----------~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 334 LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG----------MFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh----------hhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999998765 68999999999998865332110 01234566777777777777777665443
No 107
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.70 E-value=7.4e-07 Score=89.82 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH-
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI- 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i- 108 (458)
+...+.+.+++.|+++|+.. .....+..++|++| |+++.+++..+.++|.++++++++++ .++|||+-+..
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln 185 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHH
Confidence 67888999999999999999 99999999999887 99999999999999999999999994 46899975554
Q ss_pred --HHHHHHHHHHHHHh
Q 012670 109 --PALFMGFAIASFFS 122 (458)
Q Consensus 109 --~~i~~~l~~ii~~~ 122 (458)
+.....+++++-++
T Consensus 186 ~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 186 IISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 44445555555444
No 108
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.68 E-value=8.7e-06 Score=85.33 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=76.6
Q ss_pred CCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchh
Q 012670 25 SATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGL 104 (458)
Q Consensus 25 ~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~ 104 (458)
.+...+.+.+++.+.+.|++.++...+...+++|.+++++ |+.+..+ ......|+.++|++++++.. +|||
T Consensus 165 ~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~ 235 (521)
T KOG0255|consen 165 TAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRW 235 (521)
T ss_pred HHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHH
Confidence 3445589999999999999999999999999999999987 9999999 88999999999999999987 9999
Q ss_pred hhHHHHHHHHHHHHH
Q 012670 105 GFGIPALFMGFAIAS 119 (458)
Q Consensus 105 ~F~i~~i~~~l~~ii 119 (458)
.+++..+..++.++.
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 236 LFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988766665555
No 109
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.65 E-value=5.3e-07 Score=93.37 Aligned_cols=339 Identities=14% Similarity=0.081 Sum_probs=179.4
Q ss_pred chhHHHHHHH-HHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhH
Q 012670 29 AQYAVFFFGL-YLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFG 107 (458)
Q Consensus 29 ~~~~~~~~~l-~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~ 107 (458)
.+.+.+++.. ++.|+|.|+.......+++.+|++ + |+.+.++-..+..+|.++=|.+.-++.+.+|||+.++
T Consensus 132 ~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l 204 (509)
T KOG2504|consen 132 TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALL 204 (509)
T ss_pred hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H------HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHH
Confidence 3566666665 668999999999999999977654 3 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchh
Q 012670 108 IPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCL 187 (458)
Q Consensus 108 i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (458)
+-+...+-.++.-+..++...+.+|. ...+... ........+..........++ +..+.+..++-...
T Consensus 205 ~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 272 (509)
T KOG2504|consen 205 IFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN-----SAASVESTPKPVELRISERDS-----GLKKLSLSNLATLK 272 (509)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc-----ccccccccccccccccccCCC-----CCCcccccchhhhh
Confidence 87765544444444444321111111 0000000 000000000000000000000 00000000000000
Q ss_pred hhhhccccccccCCCCCCCcccccch---hhHHHHHH--HHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccC
Q 012670 188 DKAAVVSDAEIKSGDFSNPWILCTVT---QVEELKIL--IRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIP 262 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~--~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 262 (458)
+.. ..++....+ ...|.+.+ ..++.+.....+....+......+.....+ ..+. +..
T Consensus 273 ~~~--------------~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~--~g~~--~~~ 334 (509)
T KOG2504|consen 273 RGP--------------DKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS--LGLS--SND 334 (509)
T ss_pred hCC--------------ccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCC--hhh
Confidence 000 000000000 00011111 112222222222222222222222222221 1110 111
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+.+..+-++.-++..++... +.++.. .+..+...++++..+++.+...+.
T Consensus 335 aa~l~Siigi~~i~gRi~~G~----laD~~~-----~~~~~~~~~~ll~~gl~~~~~p~~-------------------- 385 (509)
T KOG2504|consen 335 AAFLLSIIGVSDIIGRIILGL----LADKPG-----IRALVLFLLTLLIAGLARLFLPFA-------------------- 385 (509)
T ss_pred hHHHHHHHHHhhhhhhhhhhh----hcCccc-----cchHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 222222222222333333333 222211 334455677777777777555553
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
.+++.++..-++.|+..+.........+.+..+.+.-..+.|+..+.++++..+|+.+.+.+.+.+
T Consensus 386 -~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t------------- 451 (509)
T KOG2504|consen 386 -TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT------------- 451 (509)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc-------------
Confidence 366667777889999999999998899999999999999999999999999999999999765432
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012670 423 NKGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
++|...|...++..+++.++.++..
T Consensus 452 --g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 452 --GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred --CCeeeehhhcChHHHHHHHHHHHhH
Confidence 2245556667777677776655554
No 110
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.63 E-value=1.2e-06 Score=86.52 Aligned_cols=141 Identities=16% Similarity=0.088 Sum_probs=119.9
Q ss_pred CcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 012670 262 PPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVS 341 (458)
Q Consensus 262 ~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
..+++-++++..+.+..|+... +.+| .++++.+...+.+..+|.++..+.
T Consensus 49 ~aG~lis~yAl~~ai~ap~l~~----lt~r-------~~Rr~lLl~~l~lFi~~n~l~alA------------------- 98 (394)
T COG2814 49 AAGQLITAYALGVALGAPLLAL----LTGR-------LERRRLLLGLLALFIVSNLLSALA------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHcc-------cchHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 3566778888889999998887 4444 455567777788888888888775
Q ss_pred ccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCC
Q 012670 342 VPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDN 421 (458)
Q Consensus 342 ~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~ 421 (458)
.+++.+.++.++.++..+..++...+.+.+.+|+++|++++++.+....++..+|..++..+.+.. +
T Consensus 99 --p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------G----- 165 (394)
T COG2814 99 --PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------G----- 165 (394)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------h-----
Confidence 388889999999999999999999999999999999999999999999999999999999887543 2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 422 LNKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 422 ~~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
....|+.+++++++..+..+...+
T Consensus 166 -----WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 166 -----WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 478899999999988888777776
No 111
>PRK03545 putative arabinose transporter; Provisional
Probab=98.60 E-value=1.8e-06 Score=86.89 Aligned_cols=137 Identities=11% Similarity=0.022 Sum_probs=101.0
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+.....+...+..+.... +.+| +++++.+..+.++.+++.+..... .+
T Consensus 49 ~~~~~~~~~~~~~~~~g~----l~dr-------~g~r~~~~~~~~~~~~~~~~~~~~---------------------~~ 96 (390)
T PRK03545 49 MLTIYAWVVALMSLPLML----LTSN-------VERRKLLIGLFVLFIASHVLSALA---------------------WN 96 (390)
T ss_pred HHHHHHHHHHHHHHHHHH----HHcC-------CChHHHHHHHHHHHHHHHHHHHHh---------------------cc
Confidence 333444444444444444 4555 455577888888888887777664 26
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
++++.+..+++|++.+...+...+++.+..|++.|+..+|++....++|..+++.+.+.+.+..
T Consensus 97 ~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~---------------- 160 (390)
T PRK03545 97 FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL---------------- 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh----------------
Confidence 7788888899999999999999999999999999999999999999999999999988765321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 426 HLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
++...|++.++++++..+..+...+
T Consensus 161 gw~~~f~~~~~~~~l~~~~~~~~~~ 185 (390)
T PRK03545 161 GWRTTFLAIGGGALITLLLLIKLLP 185 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2456777777777666555444333
No 112
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.55 E-value=1.3e-07 Score=93.64 Aligned_cols=140 Identities=16% Similarity=0.215 Sum_probs=110.8
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012670 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
+..--+.-.++.|+.+. +.+| .++.+.+++|..+-.++.+..++.. +.
T Consensus 74 ~~vf~v~~~i~sPl~gy----Ladr-------yNR~~v~~vG~~iW~~Av~~~~fs~---------------------~F 121 (493)
T KOG1330|consen 74 QTVFIVVFMIASPLFGY----LADR-------YNRKRVIAVGIFIWTLAVFASGFSN---------------------HF 121 (493)
T ss_pred hHHHHHHHHHHHHHHHH----HHhh-------cCcceEEeeHHHHHHHHHHHHHHHH---------------------HH
Confidence 33333334466788877 5555 5666889999999999988888753 67
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012670 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
|.+++.-.+.|+||....|...+++.|..|+..|+++.+++++...+|..+|...+..+.+.+ ++
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~---------------~~ 186 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT---------------FW 186 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc---------------cc
Confidence 778889999999999999999999999999999999999999999999999998888776432 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012670 427 LDYFFWLLAGLSIFNMLLYVVCAKKYK 453 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~~~~~ 453 (458)
..+.|...++++++.+++.+++.+--+
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 466788888888888877665554433
No 113
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.52 E-value=2.2e-06 Score=79.61 Aligned_cols=309 Identities=12% Similarity=0.149 Sum_probs=170.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
.+.+.+..++.+.|+|.--...+.+.....+|..+| ...+|++.....-+|+..-..+.+|+.+..+ |. |.
T Consensus 134 ~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~-~~-~~- 204 (459)
T KOG4686|consen 134 HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMG-RM-FP- 204 (459)
T ss_pred HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHH-Hh-cc-
Confidence 367788899999999999999999999999999988 9999999999999999999999999988765 21 11
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhh
Q 012670 109 PALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLD 188 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (458)
...-..+++...+-. +. .. .+.+..-......+. ++...+-++ + . -+|
T Consensus 205 ~~ghT~LG~~l~~~~-~t--------c~----~slical~lg~~D~r---Aerilh~e~------g--~--~Ge------ 252 (459)
T KOG4686|consen 205 GVGHTLLGLWLCFEV-KT--------CK----QSLICALSLGLSDDR---AERILHLEE------G--F--LGE------ 252 (459)
T ss_pred cchHHHHHHHHHHHH-HH--------HH----HHHHHHHHhhhhhhH---HHHHHhhhc------C--c--ccC------
Confidence 111111111111100 00 00 000000000000000 000000000 0 0 000
Q ss_pred hhhccccccccCCCCCCCcccccchhhHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccc
Q 012670 189 KAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMF-PIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLS 267 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 267 (458)
.| + .++++.+...+ .+....+.++.....+.+ .-+...... +.+++..-.
T Consensus 253 ----------------~p----k---Ltdv~~f~ppfw~~~iicv~yyva~fPFi~---lg~~fF~~r---fGlS~~~a~ 303 (459)
T KOG4686|consen 253 ----------------EP----K---LTDVNTFYPPFWVLVIICVLYYVAWFPFIT---LGPMFFQKR---FGLSAVSAG 303 (459)
T ss_pred ----------------Cc----c---cccccccCccHHHHHHHHHHHHHHHHHHhh---hhHHHHHHh---hCCChhhcc
Confidence 00 0 11222221111 112223333333322221 111111111 123332223
Q ss_pred cchh---hhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012670 268 SFDV---ISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 268 ~ln~---~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
+++. ....+..|+++.+++ |++++ .+.+..+.+....+=..+.+
T Consensus 304 ~i~s~vy~Isav~spvfg~i~D----k~G~n------~~wv~~a~~~tl~~H~~l~F----------------------- 350 (459)
T KOG4686|consen 304 NILSTVYGISAVLSPVFGAISD----KYGFN------LWWVASACILTLLGHSGLFF----------------------- 350 (459)
T ss_pred chhhhhhhhhhhhhhhHHHhHh----hhcce------ehhHHHHHHHHHHHhhhHHh-----------------------
Confidence 3332 333456677777443 44432 13333444433333333332
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+.+-...++.+.|++..+..-..+-.+....|+..-|+.-|..+..+++|-.+.+.+.+.+.+.. ++ .
T Consensus 351 t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~-----g~-------y 418 (459)
T KOG4686|consen 351 TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD-----GS-------Y 418 (459)
T ss_pred hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC-----Cc-------h
Confidence 23334468889999999999999999999999999999999999999999999999999876422 11 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012670 425 GHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
...+.+|+..+.+++....+.+.++|+-
T Consensus 419 ~~le~ffl~~~~~aL~svgil~~~N~kq 446 (459)
T KOG4686|consen 419 DNLEAFFLIIGLMALTSVGILFYLNKKQ 446 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhheeccc
Confidence 3466778888888888877777766654
No 114
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.47 E-value=5.9e-06 Score=83.90 Aligned_cols=142 Identities=11% Similarity=0.017 Sum_probs=101.6
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+.....+...+.+++..+ +.+|+ .+++.+.++.++.+++.+...+. .+
T Consensus 48 ~~s~~~~~~~~~~~~~g~----l~dr~-------G~r~~~~~~~~~~~~~~~~~~~~---------------------~~ 95 (412)
T TIGR02332 48 AATLFYAAYVICGIPSNI----MLAII-------GARRWIAGIMVLWGIASTATMFA---------------------TG 95 (412)
T ss_pred HHHHHHHHHHHHHhhHHH----HHHHh-------ChHHHHHHHHHHHHHHHHHHHHh---------------------cC
Confidence 344444444555555555 45553 33456788888888888877664 26
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
++++++..++.|++++...|...+++.+..|++.||..+|+++....+|..+++.+.+.+..... . .+..
T Consensus 96 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~----~~~~ 165 (412)
T TIGR02332 96 PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG------L----MALK 165 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------C----CCcc
Confidence 77888899999999999999999999999999999999999999999999999999886642100 0 0112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 012670 426 HLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
+....|.+.++++++..++.+++.
T Consensus 166 gwr~~f~~~~~~~l~~~~~~~~~~ 189 (412)
T TIGR02332 166 GWQWLFLLEGFPSVILGVMTWFWL 189 (412)
T ss_pred chhHHHHHHHHHHHHHHHHHhhcc
Confidence 346778777777766655544443
No 115
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.47 E-value=2.6e-05 Score=77.95 Aligned_cols=119 Identities=6% Similarity=0.006 Sum_probs=89.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
+++++.+.++..++++=.+..++. .+++++++...++++-..+......-++.+..|++
T Consensus 286 ig~k~~Lllag~i~~iRi~~~~~~---------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r 344 (412)
T PF01306_consen 286 IGAKNLLLLAGVIMAIRIIGSGFA---------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR 344 (412)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHT-----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG
T ss_pred cChHhHHHHHHHHHHHHHHHHhhh---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh
Confidence 555667777777777766666654 37788889999999999999999999999999999
Q ss_pred hHHHHHHH-HHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012670 379 MRSLCSAL-SLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 379 ~~g~~~g~-~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
...+...+ ..+..++|..+.+.+.+.+.+.. +++..|++++++.+...++..+..++.++
T Consensus 345 lsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~----------------G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 345 LSATLYLVGFQFAKQIGIIILSPLAGYLYDRI----------------GFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc----------------CcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 99888777 46888999998888888776422 35667889998888777776666555554
No 116
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.46 E-value=2.8e-05 Score=78.63 Aligned_cols=273 Identities=12% Similarity=0.081 Sum_probs=152.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhc----cc---cccc
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWI----QD---NAGW 102 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l----~~---~~gw 102 (458)
.....++--++.+++.....-...++.+...++.+ +|.+..++..+..++|.++...+.+.+ .+ ..||
T Consensus 111 k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~ 185 (467)
T COG2211 111 KLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGY 185 (467)
T ss_pred chHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Confidence 34444566678889999999999999999998765 499999999999999977654444333 22 3466
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCC
Q 012670 103 GLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSD 182 (458)
Q Consensus 103 ~~~F~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (458)
+..-.+-+++..+.++..++..|+ +..+..+.. ...
T Consensus 186 ~~~~~~~~vi~~i~~l~~~~~v~E---R~~~~~~~~-----------------------------------------~~~ 221 (467)
T COG2211 186 QGTALVLGVIGVILLLFCFFNVKE---RVVETQPTK-----------------------------------------TGV 221 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---ccCccccCc-----------------------------------------ccc
Confidence 665555555444444443333322 111000000 000
Q ss_pred ccchhhhhhccccccccCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccC
Q 012670 183 ELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIP 262 (458)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 262 (458)
+..+.+.. ...++....+.+.......+..++...+.+..+. +-.++.-+..
T Consensus 222 ~~~~~~~~-------------------------~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~---~y~lg~~~l~ 273 (467)
T COG2211 222 KLKLKDSF-------------------------LLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYV---TYVLGDPELF 273 (467)
T ss_pred cccHHHHH-------------------------HHHHccchHHHHHHHHHHHHHHHHHHhhhhheeE---EEEcCChHHH
Confidence 00111110 0011111112222233333444433333222211 1111111222
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
+...........++..++. .++.+|++ .++.+.+|.++.+++...+.+..
T Consensus 274 ~~~~~~~~~~~~l~~~~~~----p~L~~~~g-------kk~~~~~~~~~~~i~~~~~~f~~------------------- 323 (467)
T COG2211 274 AYLLLLASGAGLLIGLILW----PRLVKKFG-------KKKLFLIGLLLLAVGYLLLYFTP------------------- 323 (467)
T ss_pred HHHHHHHHHHHHHHHHHhH----HHHHHHhc-------hHHHHHHHHHHHHHHHHHHHhhc-------------------
Confidence 2222222222222222222 23555543 34677888888888888877753
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccch-------hhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhh
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPD-------AMRSLCSALSLLTTALGNYLSSFILTVVTYFT 409 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~-------~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~ 409 (458)
..+.++.++..++.++|.....+.-++.+.+..+- +..|..-+.+.+.+=+|..++..+.+.+....
T Consensus 324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 12566667777999999999999999999887664 45677888888888889988888888776543
No 117
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.43 E-value=1.8e-05 Score=79.87 Aligned_cols=129 Identities=8% Similarity=-0.039 Sum_probs=98.1
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
....+.+...+..|+..+ +.+| +++++.+..+.++.+++.+..... .+
T Consensus 60 ~~~~~~~~~~~~~~~~g~----l~Dr-------~grr~~~~~~~~~~~~~~~~~~~~---------------------~~ 107 (394)
T PRK10213 60 SVTVTAFVAMFASLFITQ----TIQA-------TDRRYVVILFAVLLTLSCLLVSFA---------------------NS 107 (394)
T ss_pred HHHHHHHHHHHHHHHHHH----Hhcc-------cCcHHHHHHHHHHHHHHHHHHHHH---------------------Ch
Confidence 334455555666666666 4455 444567788888888887776553 26
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
.+++++..++.|++.+...|...+++.+..|++.|+...+......++|..+++.+.+.+.+..
T Consensus 108 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~---------------- 171 (394)
T PRK10213 108 FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI---------------- 171 (394)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------
Confidence 7888889999999999999999999999999999999999999999999999999999775321
Q ss_pred hhHHHHHHHHHHHHHHH
Q 012670 426 HLDYFFWLLAGLSIFNM 442 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~ 442 (458)
++...|.+.++++++..
T Consensus 172 gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 172 GWRNVFNAAAVMGVLCI 188 (394)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 24566776666555443
No 118
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.42 E-value=1.5e-05 Score=82.94 Aligned_cols=140 Identities=12% Similarity=0.025 Sum_probs=103.4
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+|+...+.+......++.++ +.+| +.+++.+..+.++.+++.+..+..
T Consensus 43 ~~~~~~~~~l~~~~~~~~~G~----l~D~-------~Grk~~l~~~~~~~~~~~~~~~~a-------------------- 91 (495)
T PRK14995 43 LLWIIDIYSLVMAGMVLPMGA----LGDR-------IGFKRLLMLGGTLFGLASLAAAFS-------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHH-------hccHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence 455555556666667777776 4455 334467788888888888887764
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcc-cchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCC
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQ-SPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDN 421 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~-aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~ 421 (458)
.+++.+++..+++|+|.+...|.....+.+. .|++.|++.+|++.....+|..+|+.+++.+.+.
T Consensus 92 -~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~------------- 157 (495)
T PRK14995 92 -PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH------------- 157 (495)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------------
Confidence 2778888899999999999999888877665 4789999999999999999999999999977532
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 422 LNKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 422 ~~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.++.+.|.+...++++..++..+..+
T Consensus 158 ---~gwr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 158 ---FYWGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12356677766666665555444433
No 119
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.41 E-value=1.1e-05 Score=80.47 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=100.9
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++...+.+...+..++..+ +.+|. ++++.+..+.++.+++.+.....
T Consensus 43 g~~~~~~~~~~~~~~~~~g~----l~d~~-------g~r~~~~~~~~~~~~~~~~~~~~--------------------- 90 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGP----LSDRY-------GRRPVLLLGLFIFALSSLGLALS--------------------- 90 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhh----HHHhc-------CChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 34444455555566666666 44553 33356777888887777776553
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+.+.+++..++.+++.+...+...+++.+..|++.|+...|..+....+|..+++.+.+.+.+..
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------------- 156 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-------------- 156 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------
Confidence 266777888999999999999999999999999999999999999999999999999988664311
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 424 KGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
++...|.+.+++.++..+..+...+
T Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 157 --SWHAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2355677767666666655544433
No 120
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.38 E-value=1.5e-05 Score=80.55 Aligned_cols=125 Identities=10% Similarity=0.003 Sum_probs=93.7
Q ss_pred hHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHH
Q 012670 273 SVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQ 352 (458)
Q Consensus 273 ~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 352 (458)
...+..|+.++ +.+|. ++++.+..+.++.+++++..... .+++++++.
T Consensus 58 ~~~~~~~~~G~----l~dr~-------g~k~~l~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~ 105 (400)
T PRK11646 58 IQQGLGIFGGA----IADRF-------GAKPMIVTGMLMRAAGFATMAIA---------------------HEPWLLWLS 105 (400)
T ss_pred HHHHHHhhhhH----HHHHh-------CchHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHH
Confidence 33444555555 44553 33456788888888888777653 266778888
Q ss_pred HHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHH
Q 012670 353 YFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFW 432 (458)
Q Consensus 353 ~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 432 (458)
.++.+++++...|...+.+.+..|++.|+..+|+.....++|..+|+.+.+.+.. .++...|.
T Consensus 106 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~-----------------~g~~~~f~ 168 (400)
T PRK11646 106 CILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ-----------------YDFRLVCA 168 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999987752 12356677
Q ss_pred HHHHHHHHHHHHHH
Q 012670 433 LLAGLSIFNMLLYV 446 (458)
Q Consensus 433 ~~a~i~~~~~v~~~ 446 (458)
+.+++.++..++..
T Consensus 169 ~~~~~~~~~~i~~~ 182 (400)
T PRK11646 169 TGAVLFVLAAAFNA 182 (400)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655554433
No 121
>PRK10054 putative transporter; Provisional
Probab=98.37 E-value=1.5e-05 Score=80.47 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=96.3
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.++...+..+..++..|+.++ +.+|.++ ++.+.++.++.+++++.+.+.+
T Consensus 45 ~g~~~s~~~~~~~~~~~~~G~----l~Dr~g~-------k~~~~~~~~~~~~~~~~~~~~~------------------- 94 (395)
T PRK10054 45 IGYAMTIALTIGVVFSLGFGI----LADKFDK-------KRYMLLAITAFASGFIAIPLVN------------------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhhcCc-------chhHHHHHHHHHHHHHHHHHHh-------------------
Confidence 344455555566667777777 4444332 2456777777778777766543
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
+++..++...+.+.+.....+...++..+..|++.|++..|+.+...++|..+|+.+.+.+... +|
T Consensus 95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~-------g~----- 160 (395)
T PRK10054 95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQ-------SI----- 160 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cc-----
Confidence 4455555667777787888888999999999999999999999999999999999999976521 12
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012670 423 NKGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
...|.+.+++.++..+...+..
T Consensus 161 -----~~~f~~~~~~~~i~~i~~~~~~ 182 (395)
T PRK10054 161 -----NLPFWLAAICSAFPLVFIQIWV 182 (395)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655444433
No 122
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.37 E-value=1.5e-05 Score=66.76 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=93.0
Q ss_pred chhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHH
Q 012670 269 FDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFW 348 (458)
Q Consensus 269 ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 348 (458)
...+..++..++..+ +.+|. ++++.+..+..+..++.+..... .+.+.
T Consensus 6 ~~~~~~~~~~~~~g~----~~d~~-------g~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~ 53 (141)
T TIGR00880 6 GYALGQLIYSPLSGL----LTDRF-------GRKPVLLVGLFIFVLSTAMFALS---------------------SNITV 53 (141)
T ss_pred eehhHHHHHHhhHHH----HHhhc-------chhHHHHHHHHHHHHHHHHHHHh---------------------ccHHH
Confidence 344445566666665 34443 33355666767666666655543 25566
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhH
Q 012670 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLD 428 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
.....++.+++.....+...+++.+..|++.|+..++..+....+|..+++.+.+.+.+. .++.
T Consensus 54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~ 117 (141)
T TIGR00880 54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF----------------LGWR 117 (141)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc----------------cchH
Confidence 777889999999999999999999999999999999999999999999999998876421 1234
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012670 429 YFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 429 ~~f~~~a~i~~~~~v~~~~ 447 (458)
..|.+.+.+.++..+..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 118 APFLFLAILALAAFILLAF 136 (141)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5566666666655555443
No 123
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.36 E-value=2.2e-05 Score=80.23 Aligned_cols=135 Identities=12% Similarity=0.016 Sum_probs=97.7
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012670 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++.....+...+..++.++ +.+|. ++++.+.++.++.+++.++.....
T Consensus 62 ~~~~~~~~~~~~~~~~~G~----l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~--------------------- 109 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGI----VSDRS-------NARYFMGIGLIATGIINILFGFSS--------------------- 109 (434)
T ss_pred HHHHHHHHHHHHHHhhhhH----HHhhc-------CCchhHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3444444555566666666 45553 333567888888888877666542
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+++.++...++.+++++...+...+++.+..|++.||..+|+++...++|..+++.+.+.+.+.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~---------------- 173 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH---------------- 173 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------------
Confidence 5666677788899999999999999999999999999999999999999999999988876521
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 012670 425 GHLDYFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~ 447 (458)
.++.+.|.+.++++++..+...+
T Consensus 174 ~gw~~~f~~~~i~~~~~~~~~~~ 196 (434)
T PRK11663 174 YGWRYGMMIAGIIAIVVGLFLCW 196 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 12456677777666655444433
No 124
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.36 E-value=1.2e-05 Score=82.13 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+.....+.+.+..+|.+.......+++.+.-.+|.. +|+...++.+....+|.+++-.++|++.++.++++.|.++
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 444556777888999999999999999999866542 2788899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCc
Q 012670 110 ALFMGFAIASFFSGTS 125 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~ 125 (458)
++...+.++..++..+
T Consensus 161 ~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 161 AALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8766666555444443
No 125
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.35 E-value=1e-05 Score=83.66 Aligned_cols=140 Identities=13% Similarity=0.083 Sum_probs=102.7
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+++.....+...+..|+..+ +.+|+ ++++.+.++.++.+++.+.....
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~----l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~-------------------- 87 (485)
T TIGR00711 39 VQWVITSYMLANAISIPLTGW----LAKRF-------GTRRLFLISTFAFTLGSLLCGVA-------------------- 87 (485)
T ss_pred hhHHHHHHHHHHHHHHHhHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHhCc--------------------
Confidence 445566666666677777776 44553 33456778888888777766543
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
.+++.+++..+++|++.+...+...+++.+..|++.|+..++++.....+|..+|+.+.+.+.+.. +|
T Consensus 88 -~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~w----- 155 (485)
T TIGR00711 88 -PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY------HW----- 155 (485)
T ss_pred -CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc------Cc-----
Confidence 267778889999999999999999999999999999999999999999999999999988764211 22
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 423 NKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.+.|.+.+.++++..++.++..+
T Consensus 156 -----~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 156 -----RWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred -----eehhhhhhHHHHHHHHHHHHHcC
Confidence 44566666665555554444433
No 126
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.34 E-value=2.2e-05 Score=78.81 Aligned_cols=139 Identities=14% Similarity=0.039 Sum_probs=102.5
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
++....+.+...+..|+..+ +.+| .++++.+.++.++.+++.++....
T Consensus 41 g~~~s~~~~~~~~~~~~~g~----l~dr-------~g~r~~~~~~~~~~~~~~~l~~~~--------------------- 88 (382)
T PRK10091 41 GHMISYYALGVVVGAPIIAL----FSSR-------YSLKHILLFLVALCVIGNAMFTLS--------------------- 88 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHcc-------CccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 44555566666677777776 4455 344467788888888888776654
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+++++.+..++.|++++...+.....+.+..|++.|+..++.+.....+|..+++.+.+.+.+.
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~--------------- 153 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE--------------- 153 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh---------------
Confidence 26778888899999999999998899999999999999999999999999999998888765421
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 424 KGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.++.+.|.+.++++++..+..+...+
T Consensus 154 -~gwr~~f~~~~~~~~~~~~~~~~~lp 179 (382)
T PRK10091 154 -FSWRYTFLLIAVFNIAVLASIYFWVP 179 (382)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12456777777766665554443333
No 127
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.33 E-value=2.8e-05 Score=78.55 Aligned_cols=110 Identities=13% Similarity=0.059 Sum_probs=83.4
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++.....+..++..++.++ +.+|.+ +++.+..+.++.+++.+.....
T Consensus 53 g~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 100 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGR----LADRIG-------RKRILIVSVALFGLFSLATAQA--------------------- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------CchhHHHHHHHHHHHHHHHHHh---------------------
Confidence 34445555555566666666 455533 3356677777777766555543
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
.+++++++..++.|++.+...+...+++.+..|++.|+..+++.+....+|..+++.+...+
T Consensus 101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26777888899999999999999999999999999999999999999999999998887654
No 128
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.32 E-value=1.1e-05 Score=79.31 Aligned_cols=134 Identities=19% Similarity=0.180 Sum_probs=100.4
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+++.....+...+..++.++ +.+| .++++.+.++.++.+++.....+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~g~----l~dr-------~g~r~~l~~~~~~~~~~~~~~~~~-------------------- 82 (352)
T PF07690_consen 34 IGLLFSAFFLGSALFSPFAGY----LSDR-------FGRRRVLIIGLLLFALGSLLLAFA-------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHH-------S-HHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHH-------cCCeeeEeehhhhhhhHHHHhhhh--------------------
Confidence 344455555556667777666 4555 344467788888888884444432
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
.+.+.+++..++.|++.+...+...+++.+..|++.|+..+++.....++|..+++.+.+.+.+.
T Consensus 83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-------------- 147 (352)
T PF07690_consen 83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-------------- 147 (352)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--------------
T ss_pred -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc--------------
Confidence 14557888999999999999999999999999999999999999999999999999999976521
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 012670 423 NKGHLDYFFWLLAGLSIFNMLL 444 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~ 444 (458)
.++...|.+.+++.++..++
T Consensus 148 --~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 148 --FGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp --CHHCCHHHHHHHHHHHHHHH
T ss_pred --cccccccccccchhhhhhhh
Confidence 12345677777777777664
No 129
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.31 E-value=6.1e-05 Score=78.81 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc-ccchhhhHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN-AGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~-~gw~~~F~i 108 (458)
+...++++|++.|+|.|+..-.....++|.-|++. |+...+.+....++|..+|..++....+. ++||..+++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 88999999999999999999999999999998877 99999999999999999997666555443 599988888
Q ss_pred HHHHHHHHHHH
Q 012670 109 PALFMGFAIAS 119 (458)
Q Consensus 109 ~~i~~~l~~ii 119 (458)
..+..++..+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 77655444444
No 130
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.31 E-value=3e-05 Score=76.47 Aligned_cols=117 Identities=12% Similarity=0.062 Sum_probs=87.3
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++..++.+...+..|+..+ +.+|+ ++++.+..+.++.+++.......... ..
T Consensus 37 g~~~~~~~~~~~i~~~~~G~----l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~----------------~~ 89 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGA----LADRY-------DRKKVMIGADLIRAVLVAVLPFVALL----------------GG 89 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhH----HHHhh-------chhHHHHHHHHHHHHHHHHHHHHHHc----------------CC
Confidence 34455555566667777766 44553 33356667777766666665554311 01
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
.+.+.+....++.+++.+...+...+++.+..|++.|+...+..+....+|..+|+.+.+.+.+
T Consensus 90 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 153 (365)
T TIGR00900 90 LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA 153 (365)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2667778889999999999999999999999999999999999999999999999999887753
No 131
>PRK10504 putative transporter; Provisional
Probab=98.30 E-value=3.1e-05 Score=79.96 Aligned_cols=139 Identities=11% Similarity=0.055 Sum_probs=98.0
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012670 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++.....+...+..|+.++ +.+|+ .+++.+..+.++.+++.+..... .
T Consensus 49 ~~~~~~~~~~~~~~~~~g~----l~d~~-------g~r~~~~~~~~~~~~~~~~~~~~---------------------~ 96 (471)
T PRK10504 49 MVIVSYVLTVAVMLPASGW----LADRV-------GVRNIFFTAIVLFTLGSLFCALS---------------------G 96 (471)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHh-------chHHHHHHHHHHHHHHHHHHHHh---------------------C
Confidence 3344444444556666666 45553 23355666777777776655442 2
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+.+.+++..+++|+|.+...|...+.+.+..|++.++...|+.....++|..+|+.+.+.+.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~---------------- 160 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY---------------- 160 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh----------------
Confidence 6677788899999999999999999999999999999999999999999999999999877531
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012670 425 GHLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
.++.+.|.+...++.+..+......++
T Consensus 161 ~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 161 ASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 124566776666655555554444333
No 132
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.28 E-value=6.7e-05 Score=74.02 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=70.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhh
Q 012670 300 SELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAM 379 (458)
Q Consensus 300 ~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~ 379 (458)
...+.+.+++++..+..+...+.+ ...-+.+.-.+.++..+-+...+=++..+.+|++.
T Consensus 316 g~k~vl~~~lvi~~~~~~~~~~~~---------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k 374 (438)
T COG2270 316 GSKPVLMIGLVILSIAALYLIFLE---------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK 374 (438)
T ss_pred CCceeehHHHHHHHHHHHHHHHcc---------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc
Confidence 333556677776666655555542 11223345578888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc
Q 012670 380 RSLCSALSLLTTALGNYLSSFILTVVTYFTT 410 (458)
Q Consensus 380 ~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~ 410 (458)
.++..|++++..-.++.+|+.+.+.+.+.+.
T Consensus 375 ~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 375 EGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred ccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999987664
No 133
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.27 E-value=3.2e-05 Score=77.57 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=86.9
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++..+..+...+..++.++ +.+|. .+++.+.++.++.+++.+...+.
T Consensus 50 g~~~~~~~~~~~~~~~~~G~----l~Dr~-------g~r~~~~~~~~~~~~~~~~~~~~--------------------- 97 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGL----WGDRY-------GRRLPMVTSIVLFSAGTLACGFA--------------------- 97 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHh-------ccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 44455555555666676666 44553 33356677877777777766654
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+++.+....++.|++++...+...+++.+..|++.|+..+++.+....+|..+++.+.+.+.
T Consensus 98 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 98 PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 266777888999999999999999999999999999999999999999999999999888765
No 134
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.25 E-value=5.6e-06 Score=88.53 Aligned_cols=172 Identities=12% Similarity=0.121 Sum_probs=109.6
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------h--
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRL--A-------R-- 331 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~--~-------~-- 331 (458)
.+++.+.+.+.-.+..++..+ +.+| .++++.+.+|.++.++|.++..+.+.....+ . +
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~----~~~r-------~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSY----FGTK-------LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHH----hhcc-------cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 455566666666666666665 4444 3344667889999999988887654211000 0 0
Q ss_pred --hhcccCCC---------------CCc--cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHH
Q 012670 332 --ELELVDQN---------------VSV--PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTA 392 (458)
Q Consensus 332 --~~~~~~~~---------------~~~--~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ 392 (458)
+.++-..+ ... ...+..++++.+++|+|++...+.+.+++.+..|++.|+.+.|+++....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 00000000 000 11345567799999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHhhhhhhhhc-c-----------CCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012670 393 LGNYLSSFILTVVTYFTT-A-----------GGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 393 ig~~ig~~l~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
+|..+|+.+++.+.+... . ++|..|. +..+..|.+.++++++..+.++++.++
T Consensus 219 iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWi------GaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWI------GAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred hhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHH------HHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999998765321 0 0011111 123344677777777766665555443
No 135
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.23 E-value=1.5e-05 Score=79.18 Aligned_cols=138 Identities=14% Similarity=0.069 Sum_probs=101.1
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++..++.+...+..++..+ +.+|.++| +.+..+.++.+++.......
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~----l~d~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 79 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGW----LLDRFGAR-------KTLAVFIVIWGVFTGLQAFA--------------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHH----HHHhcCcc-------eeeHHHHHHHHHHHHHHHHH---------------------
Confidence 44555566666667777666 44554322 34566777777776666554
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+++.+++..++.|++.+...+...+++.+..|++.|+..+++......+|..+++.+.+.+.+..
T Consensus 80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------- 145 (399)
T TIGR00893 80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-------------- 145 (399)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC--------------
Confidence 267778889999999999999999999999999999999999999999999999999988654211
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhh
Q 012670 424 KGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
++.+.|.+.++++++..+..++..
T Consensus 146 --~~~~~~~~~~~~~~~~~~~~~~~~ 169 (399)
T TIGR00893 146 --SWQWAFIIEGVLGIIWGVLWLKFI 169 (399)
T ss_pred --CchHHHHHHHHHHHHHHHHhhhee
Confidence 135667777777666665554433
No 136
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=5e-06 Score=80.95 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=119.0
Q ss_pred ccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 012670 260 TIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQN 339 (458)
Q Consensus 260 ~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
+...+++...-++.-++..|+++. +.+| +.....+.+|++++..+-+++++++
T Consensus 105 ~~~iG~LFaskA~~qllvnp~~G~----l~~~-------iGy~ipm~~Gl~vmf~sTilFafg~---------------- 157 (464)
T KOG3764|consen 105 NTQIGLLFASKALVQLLVNPFFGN----LIDR-------IGYKIPMVAGLFVMFLSTILFAFGN---------------- 157 (464)
T ss_pred ccchhHHHHHHHHHHHHhcccchh----hHHH-------hccccHHHHHHHHHHHHHHHHHHcc----------------
Confidence 344555555566666666677766 3444 3444678999999999999999985
Q ss_pred CCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhh-HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCC
Q 012670 340 VSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAM-RSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWI 418 (458)
Q Consensus 340 ~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~-~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~ 418 (458)
+++.++++..++|+|..++...+++.+.|..|++. ||.++|+..-..++|-.+|+.+++.+.+...
T Consensus 158 -----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-------- 224 (464)
T KOG3764|consen 158 -----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-------- 224 (464)
T ss_pred -----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC--------
Confidence 66788899999999999999999999999999987 5999999999999999999999998875432
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012670 419 PDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 419 ~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
...-|.++++++++...+-+++.+..+..
T Consensus 225 --------k~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 225 --------KSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred --------CcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 23449999999999998887777665543
No 137
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.20 E-value=0.00013 Score=73.66 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=94.8
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+..+..+...+..|+.++ +.+|. .+++.+..+.++.+++.++.... .+
T Consensus 59 ~~~~~~~~~~~~~~~~g~----l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~---------------------~~ 106 (408)
T PRK09874 59 VFSITFLFSAIASPFWGG----LADRK-------GRKIMLLRSALGMGIVMVLMGLA---------------------QN 106 (408)
T ss_pred HHHHHHHHHHHHHHHHHH----Hhhhh-------CcHHHHHHHHHHHHHHHHHHHHH---------------------hh
Confidence 344455555666666666 44443 23355667777777777665543 26
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
++++++..++.+++.+. .+...+.+.+..|++.|+...+.......+|..+++.+.+.+.+..
T Consensus 107 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------------- 169 (408)
T PRK09874 107 IWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY---------------- 169 (408)
T ss_pred HHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 67777888888888654 5777888899999999999999999999999999999988765321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 426 HLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
++...|.+.+++.++..+..++..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 170 GLRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2355677777776666665544443
No 138
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.20 E-value=9.7e-05 Score=75.06 Aligned_cols=133 Identities=8% Similarity=0.038 Sum_probs=95.1
Q ss_pred hhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHH
Q 012670 270 DVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQ 349 (458)
Q Consensus 270 n~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 349 (458)
..+...+.+++... +.+|++ +++.+..+.++.+++.+..... .+++++
T Consensus 60 ~~~~~~~~~~~~G~----l~dr~G-------rr~~l~~~~~~~~~~~~~~~~a---------------------~~~~~l 107 (413)
T PRK15403 60 YLAGGMALQWLLGP----LSDRIG-------RRPVLITGALIFTLACAATLFT---------------------TSMTQF 107 (413)
T ss_pred HHHHHHHHHHhhhH----HHHHcC-------chHHHHHHHHHHHHHHHHHHHc---------------------CCHHHH
Confidence 33333445555554 555543 3356677777777777666553 267788
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHH
Q 012670 350 IPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDY 429 (458)
Q Consensus 350 i~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (458)
++..+++|++++...+.....+.+..|++.+++.++++.....+|..+|+.+++.+.+. .++.+
T Consensus 108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~----------------~gw~~ 171 (413)
T PRK15403 108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF----------------VHWKV 171 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------cCHHH
Confidence 88999999999887777788888899999999999999999999999999988876521 12456
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 012670 430 FFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 430 ~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.|.+.+++.++..+..++..+
T Consensus 172 ~f~~~~~~~~i~~~~~~~~lp 192 (413)
T PRK15403 172 LFAIIAVMGLIAFVGLLLAMP 192 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 777777777766655444333
No 139
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.19 E-value=2.8e-06 Score=71.26 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++..++.|++.+...+...+.+.|.+|+++ |+++++++....++|..++|.+++++.+..+|++.|++.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 56677888899999999999999999999999877 999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHh
Q 012670 110 ALFMGFAIASFFS 122 (458)
Q Consensus 110 ~i~~~l~~ii~~~ 122 (458)
+...+++.+...+
T Consensus 124 ~~~~~~~~~~~~~ 136 (141)
T TIGR00880 124 AILALAAFILLAF 136 (141)
T ss_pred HHHHHHHHHHHhh
Confidence 8766666555433
No 140
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.16 E-value=0.00049 Score=72.96 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc-------------
Q 012670 33 VFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN------------- 99 (458)
Q Consensus 33 ~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~------------- 99 (458)
.++++.++.|+|+.+..|.-.+.+=|-..+++ -...+++++...-+|+++|.++|++..+-
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~ 312 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITP 312 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCC
Confidence 67899999999999999999999888877766 68899999999999999999999987442
Q ss_pred -----c-cchhhhHHHHHHHHHHHHHHHhcCcce
Q 012670 100 -----A-GWGLGFGIPALFMGFAIASFFSGTSLY 127 (458)
Q Consensus 100 -----~-gw~~~F~i~~i~~~l~~ii~~~~~~~~ 127 (458)
+ .|+..|++++.+.++..+.++++-|..
T Consensus 313 ~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 313 TDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 1 388899999988888777777666544
No 141
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.14 E-value=0.00013 Score=73.64 Aligned_cols=133 Identities=15% Similarity=0.080 Sum_probs=91.8
Q ss_pred cchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhH
Q 012670 268 SFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIF 347 (458)
Q Consensus 268 ~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 347 (458)
....+...+..++.+. +.+|+ ++++.+.++.++.+++.+..... .+++
T Consensus 55 ~~~~~~~~~~~~~~G~----l~dr~-------g~r~~l~~~~~~~~~~~~~~~~~---------------------~~~~ 102 (406)
T PRK15402 55 TAYLAGGMFLQWLLGP----LSDRI-------GRRPVMLAGVAFFILTCLAILLA---------------------QSIE 102 (406)
T ss_pred HHHHHHHHHHHHHHHH----HHHHh-------CChHHHHHHHHHHHHHHHHHHHH---------------------ccHH
Confidence 3334444455555555 45553 33356677777777776665543 2566
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchh
Q 012670 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHL 427 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
.++...++.|++.+...+...+.+.+..|++.++..+++......++..+|+.+.+.+.+.. +|
T Consensus 103 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------~w---------- 166 (406)
T PRK15402 103 QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL------PW---------- 166 (406)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------Cc----------
Confidence 77778899999999988999999999999999999999988888888899988887664311 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 012670 428 DYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 428 ~~~f~~~a~i~~~~~v~~~~~ 448 (458)
...|.+.++++++..+..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~ 187 (406)
T PRK15402 167 RGMFVLFAALAALSFFGLWRA 187 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHh
Confidence 455666676666665544433
No 142
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.13 E-value=0.00013 Score=73.35 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=96.5
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
...+..+...+..|+.++ +.+|.+ +++.+..+.++.+++....... .+
T Consensus 43 ~~~~~~~~~~~~~~~~G~----l~Dr~g-------~r~~l~~~~~~~~i~~~~~~~~---------------------~~ 90 (392)
T PRK10473 43 AFSVYLAGMAAAMLFAGK----IADRSG-------RKPVAIPGAALFIIASLLCSLA---------------------ET 90 (392)
T ss_pred HHHHHHHHHHHHHHhHhH----HHHHhC-------ChHHHHHHHHHHHHHHHHHHHh---------------------Cc
Confidence 334444445566677776 444433 2356677777777777766543 25
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
.++++...++++++.+...+...+++.+..|++.|+...+..+....++..+++.+.+.+.+. .
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~----------------~ 154 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK----------------F 154 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------c
Confidence 666777889999999999999999999999999999999999999999999998888765421 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 012670 426 HLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
++...|.+.++++++..++.+...
T Consensus 155 g~~~~~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 155 PWQSLFYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHc
Confidence 235566777766666665544433
No 143
>PTZ00207 hypothetical protein; Provisional
Probab=98.13 E-value=0.00068 Score=71.38 Aligned_cols=82 Identities=13% Similarity=0.023 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHH-HhHhhhhccccccchhhhH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALI-SSSLIVWIQDNAGWGLGFG 107 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~i-gp~l~g~l~~~~gw~~~F~ 107 (458)
.+.+.+++.+++.|+|.+.+.+.....+.++|| ++ |+++.++.....++|+++ +++..+++.+ +|++.|+
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl 188 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF 188 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 378888999999999999999999999999996 44 899999999999999975 6666666653 6788788
Q ss_pred HHHHHHHHHHHH
Q 012670 108 IPALFMGFAIAS 119 (458)
Q Consensus 108 i~~i~~~l~~ii 119 (458)
+.++..++..++
T Consensus 189 ~l~vl~~vv~ll 200 (591)
T PTZ00207 189 FLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHH
Confidence 777655544444
No 144
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.08 E-value=1.9e-05 Score=81.50 Aligned_cols=144 Identities=13% Similarity=0.008 Sum_probs=95.6
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012670 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++.....+.-.+.+++.++ +.+|+ ++++.+.++.++.+++.+..+..... ...
T Consensus 68 ~~~s~~~~~~~~~~~~~G~----l~Dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~----------------~~~ 120 (467)
T PRK09556 68 MIGLGFSITYGVGKTLVGY----YADGK-------NTKQFLPFLLILSAICMLGFGASLGS----------------GSV 120 (467)
T ss_pred HHHHHHHHHHHHHHhhhhh----Hhhcc-------CccchHHHHHHHHHHHHHHHHHHHhc----------------ccc
Confidence 3344444444456666666 45554 33456667777766666555542110 013
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+.+.+++..++.|++++...|...+++.+..|++.||.++|++.....+|..+++.+........ . .
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~--------~-----~ 187 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF--------F-----D 187 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh--------c-----c
Confidence 67778888999999999999999999999999999999999999999999999988775443210 0 0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q 012670 425 GHLDYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~ 448 (458)
++....|.+.++++++..++.+++
T Consensus 188 ~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 188 GHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHh
Confidence 112344666666666555554444
No 145
>PRK03699 putative transporter; Provisional
Probab=98.08 E-value=0.00017 Score=72.74 Aligned_cols=134 Identities=9% Similarity=0.017 Sum_probs=93.7
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+...+.+...+..++..+ +.+|+ ++++.+..+.++.+++.++..+. .+
T Consensus 47 ~~s~~~~~~~i~~~~~g~----l~dr~-------g~r~~~~~~~~~~~i~~~l~~~~---------------------~~ 94 (394)
T PRK03699 47 TFTFLNAGILISIFLNAW----LMEII-------PLKRQLIFGFALMILAVAGLMFS---------------------HS 94 (394)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHh-------hHHHHHHHHHHHHHHHHHHHHHc---------------------ch
Confidence 334444444555566665 44443 33356677777777777766653 25
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
.+++++..++.+++.+...+...+.+.+..|++.|+..++..+....+|..+++.+.+.+... ..
T Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------------~~ 159 (394)
T PRK03699 95 LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR---------------SI 159 (394)
T ss_pred HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------cc
Confidence 667778889999999999999999999999999999999999888899998888887755310 01
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 012670 426 HLDYFFWLLAGLSIFNMLLYV 446 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~ 446 (458)
++.+.|...+++.++..++.+
T Consensus 160 gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 160 EWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 245667776766665554433
No 146
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.07 E-value=8.9e-05 Score=73.95 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=97.5
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012670 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
.....+...+..++..+ +.+|+ ++++.+..+.++.+++.......+ +.
T Consensus 32 ~~~~~~~~~~~~~~~g~----l~d~~-------g~~~~~~~~~~~~~i~~~~~~~~~---------------------~~ 79 (377)
T PRK11102 32 LSAYILGFAIGQLFYGP----MADSF-------GRKPVILGGTLVFALAAVACALAQ---------------------TI 79 (377)
T ss_pred HHHHHHHHHHHHHhhch----HHhhc-------CChHHHHHHHHHHHHHHHHHHHHc---------------------cH
Confidence 33444444555566555 44553 334567788888888877776542 55
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012670 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
+.++...++.+++.+...+...+++.+..|++.|+..+++++....+|..+++.+.+.+.+.. +
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------~ 143 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF----------------S 143 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------------C
Confidence 667778899999999999999999999999999999999999999999999999888765321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 012670 427 LDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
+...|.+.++++++..+...+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~ 166 (377)
T PRK11102 144 WHAIFWVLALAAILAAALVFFFI 166 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567776766666655544433
No 147
>TIGR00895 2A0115 benzoate transport.
Probab=98.06 E-value=4.1e-05 Score=76.47 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=82.5
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+..+..+..++..++..+ +.+|. ++++.+..+.++.+++.++.... .+
T Consensus 57 ~~~~~~~~~~~~~~~~g~----l~d~~-------g~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 104 (398)
T TIGR00895 57 LFSAGLIGMAFGALFFGP----LADRI-------GRKRVLLWSILLFSVFTLLCALA---------------------TN 104 (398)
T ss_pred HHHHHHHHHHHHHHHhHH----HHHHh-------hhHHHHHHHHHHHHHHHHHHHHc---------------------cc
Confidence 334444444455555555 44443 33356677777777776666543 25
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+.+++..++.+++.+...+...+++.+..|++.|+..+++......+|..+++.+.+.+.
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 6667788999999999999999999999999999999999999999999999999888664
No 148
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.06 E-value=0.00027 Score=71.78 Aligned_cols=115 Identities=13% Similarity=0.029 Sum_probs=89.9
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+++.....+...+..+...+ +.+|+ .+++.+.+|.++.+++.++......
T Consensus 40 ~g~l~s~~~~g~~i~~~~~g~----l~~r~-------G~r~~~~~g~~l~~~g~~l~~~~~~------------------ 90 (410)
T TIGR00885 40 AALVQSAFYGGYFIMAIPAAI----FMKKL-------SYKAGILLGLFLYALGAFLFWPAAE------------------ 90 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHh-------CchHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 344555555666666676666 55663 3446788899998888777544321
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
..++++++...++.|+|.++..+..+.++.+..|++.+++.+++.+..+++|..+|+.+...+.
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256777788999999999999999999999999999999999999999999999999988774
No 149
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.04 E-value=7.3e-05 Score=77.40 Aligned_cols=140 Identities=10% Similarity=-0.024 Sum_probs=97.8
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+.........+..++.++ +.+|+ ..+++.+.++.++.+++.+++.... +
T Consensus 53 ~~~~~~~~~~~~~~~~G~----laDr~------~G~~~~l~~~~~~~~~g~~~~~~~~---------------------~ 101 (475)
T TIGR00924 53 IFGAYSALVYLLTSVGWW----FGDRV------WGTKKTMVLGGIVLMLGHFMLAMSI---------------------Y 101 (475)
T ss_pred HHHHHHHHHHHHHhhHHH----HHHhh------cchHHHHHHHHHHHHHHHHHHHhcc---------------------c
Confidence 334444444455555555 44442 2333567888888888887776532 4
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh---hHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA---MRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~---~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
.+.+++...+.++|+++..|...+++.+..|++ .|+...++++...++|..+|+.+.+.+.+..
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~------------- 168 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY------------- 168 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 556667888999999999999999999999875 4888999999999999999999999775311
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012670 423 NKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
+++..|.+.++..+++.+.++...+.+
T Consensus 169 ---g~~~~f~~~~~~~~~~~l~~~~~~~~~ 195 (475)
T TIGR00924 169 ---GYHVGFNLAAVGMVIGLLTFFAGRHML 195 (475)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHccccc
Confidence 245667776666566655555444433
No 150
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.04 E-value=0.00021 Score=71.66 Aligned_cols=112 Identities=9% Similarity=0.059 Sum_probs=87.0
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+++.....+...+..|+..+ +.+|+ .+++.+..+.++.+++.......+
T Consensus 43 ~G~~~s~~~l~~~~~~~~~g~----l~dr~-------g~k~~~~~~~~~~~~~~~~~~~~~------------------- 92 (381)
T PRK03633 43 VGVVSSSYFTGNLVGTLLAGY----VIKRI-------GFNRSYYLASLIFAAGCAGLGLMV------------------- 92 (381)
T ss_pred HHHHHHHHHHHHHHHHHhHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 344555555555666666666 44443 333567788888888877766542
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+.+++..++.|++.+...|...+.+.+..|++.|++.++.+....++|..+|+.+.+.+.
T Consensus 93 --~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 93 --GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66777888999999999999998888888999999999999999999999999999988664
No 151
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.04 E-value=5.8e-06 Score=83.35 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
+...+++..++.|++.+...|.....+.|.+|+++ |++++++++...++|..++|.+.|++.++.||++.|++.
T Consensus 301 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 374 (399)
T PRK05122 301 SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAA 374 (399)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 45566778889999999988988888888887765 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCc
Q 012670 110 ALFMGFAIASFFSGTS 125 (458)
Q Consensus 110 ~i~~~l~~ii~~~~~~ 125 (458)
+...+++++..+..++
T Consensus 375 ~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 375 ALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8877777766555444
No 152
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.03 E-value=7.9e-05 Score=77.38 Aligned_cols=106 Identities=8% Similarity=0.006 Sum_probs=79.1
Q ss_pred hhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHH
Q 012670 272 ISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIP 351 (458)
Q Consensus 272 ~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 351 (458)
....++.++.++ +.+|+ ..+++.+.+|.++.+++.+.+.+.. .....++.
T Consensus 61 ~~~~~~~~~~G~----laDr~------~G~r~~~~~g~~~~~~g~~~~~~~~--------------------~~~~ll~~ 110 (489)
T PRK10207 61 ALVYGLISIGGY----VGDHL------LGTKRTIVLGAIVLAIGYFMTGMSL--------------------LKPDLIFI 110 (489)
T ss_pred HHHHHHHhhHHH----hhhhc------cchHHHHHHHHHHHHHHHHHHHHhc--------------------cchhHHHH
Confidence 334444556666 44542 2334678899999988887777532 11222446
Q ss_pred HHHHHhHHHHHhhhhhhhhhhcccchh--hHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 352 QYFLLGAAEVCTFIGQLEFFYDQSPDA--MRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 352 ~~~l~g~ge~l~~~~~~~~~~~~aP~~--~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
..+++++|+++..|...+++.++.|++ .|+...+.+.+..++|..+|+.+++.+.+
T Consensus 111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999887 45778999999999999999999998763
No 153
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.02 E-value=0.00018 Score=73.57 Aligned_cols=144 Identities=14% Similarity=0.029 Sum_probs=95.5
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++..+..+...+..++..+ +.+|.+ +++.+..+.++.+++.+....... ..
T Consensus 64 g~~~~~~~~~~~~~~~~~G~----l~dr~g-------~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 115 (438)
T TIGR00712 64 GFALSAISIAYGFSKFIMGS----VSDRSN-------PRVFLPAGLILSAAVMLLMGFVPW-----------------AT 115 (438)
T ss_pred HHHHHHHHHHHHHhhhccch----hhhccC-------CceehHHHHHHHHHHHHHHhcccc-----------------cc
Confidence 33444444445555566666 455543 224556677777777666544310 01
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+.+.+.+..++.+++++...+...+.+.+..|++.||..+|+++...++|..+++.+.+......
T Consensus 116 ~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-------------- 181 (438)
T TIGR00712 116 SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-------------- 181 (438)
T ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh--------------
Confidence 244556667889999999999999999999999999999999999999999999887766432110
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 424 KGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.++...|.+.++++++..++.+++.+
T Consensus 182 -~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 182 -NDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12356677777777776655544443
No 154
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.00 E-value=0.00014 Score=70.99 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=99.0
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
++......+...+..|+..+ +.+|.++ ++.+.++.++..++.......+
T Consensus 37 ~~~~~~~~~~~~~~~~~~g~----~~d~~g~-------r~~~~~~~~~~~~~~~~~~~~~-------------------- 85 (352)
T cd06174 37 GLIVSAFSLGYALGSLLAGY----LSDRFGR-------RRVLLLGLLLFALGSLLLAFAS-------------------- 85 (352)
T ss_pred HHHHHHHHHHHHHHHHhHHH----HHHHhCC-------chhhHHHHHHHHHHHHHHHHhc--------------------
Confidence 34455555555666677666 4455332 3467788888888877766542
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
+.+.+++..++.+++.+...+...+++.+..|++.|+..++.......+|..+++.+.+.+.+..
T Consensus 86 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------- 150 (352)
T cd06174 86 -SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-------------- 150 (352)
T ss_pred -cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 66778889999999999999999999999999999999999999999999999999998775321
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 012670 424 KGHLDYFFWLLAGLSIFNMLLY 445 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~ 445 (458)
+....|.+.+++.++..+..
T Consensus 151 --~~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 151 --GWRWLFLILAILGLLLALLL 170 (352)
T ss_pred --hHHHHHHHHHHHHHHHHHHH
Confidence 13455666666555555443
No 155
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.00 E-value=0.00019 Score=72.45 Aligned_cols=110 Identities=14% Similarity=0.008 Sum_probs=87.3
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++.+.+.+...+.+|+..+ +.+|+ .+++.+..+.++.+++.+...+.+
T Consensus 47 g~~~s~~~~~~~l~~~~~g~----l~dr~-------G~r~~l~~~~~l~~~~~~~~~~a~-------------------- 95 (393)
T PRK09705 47 ALLTALPVVTMGGLALAGSW----LHQHV-------SERRSVAISLLLIAVGALMRELYP-------------------- 95 (393)
T ss_pred HHHHHHHHHHHHHHhhhhHH----HHHHh-------CchHHHHHHHHHHHHHHHHHHHCc--------------------
Confidence 44455555556666677666 45553 444778899999999998887753
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+++.+++..+++|+|++...+...+.+.+..| +.|+.++|.+......|..+|+.+.+.+.
T Consensus 96 -~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 96 -QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred -chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888999999999999999999988887 77999999999999999999998888654
No 156
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.00 E-value=2.1e-05 Score=77.89 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=96.7
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012670 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
.+..+..+...+..++..+ +.+|.+ +++.+.++.++.+++.++.....
T Consensus 34 ~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~~--------------------- 81 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGS----VSDRSN-------PRVFLPIGLILCAIVNLFFGFST--------------------- 81 (379)
T ss_pred HHHHHHHHHHHhhhhhhhH----HHHhhC-------CeehhHHHHHHHHHHHHHHHHhh---------------------
Confidence 3444444555555666665 445533 33567788888888877776642
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhH-HhhhhhhhhccCCCcCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSF-ILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~-l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
+.+.+++..++.+++.+...+...+++.+..|++.|+..+++++....+|..+++. +...+...
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------------- 146 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL--------------- 146 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc---------------
Confidence 66777888999999999999999999999999999999999999999999999984 44433211
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhh
Q 012670 424 KGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
.+....|.+.++++++..++.++..
T Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 147 -YSWHWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred -CCchhHHHHHHHHHHHHHHHHheee
Confidence 1124556776766666555554443
No 157
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.99 E-value=0.00042 Score=69.66 Aligned_cols=134 Identities=10% Similarity=0.011 Sum_probs=92.6
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
......+...+..++.+. +.+|+ ++++.+..+.++.+++.+..... .+
T Consensus 48 ~~~~~~~~~~~~~~~~G~----l~Dr~-------grr~~~~~~~~~~~~~~~~~~~~---------------------~~ 95 (394)
T PRK11652 48 VMAAYLLTYGLSQLFYGP----LSDRV-------GRRPVILVGMSIFILGTLVALFA---------------------HS 95 (394)
T ss_pred HHHHHHHHHHHHHHhhhh----HHHhc-------CChHHHHHHHHHHHHHHHHHHHH---------------------cc
Confidence 334444445556666665 45553 33355677777777776665443 25
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
.+.+++..++.|++.+...+...++..+..|++.++...+.++....++..+++.+.+.+.+..
T Consensus 96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~---------------- 159 (394)
T PRK11652 96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF---------------- 159 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------
Confidence 6777788899999998888888889999999999999999999999999999998888764211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 012670 426 HLDYFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~ 447 (458)
++...|.+.++++++..+...+
T Consensus 160 g~~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK11652 160 GWRACYLFLLLLGAGVTFSMAR 181 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 1355666666655544444333
No 158
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.99 E-value=0.0002 Score=71.59 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+++++++..+++|+|++. .+.....+.+..|++.|++++++.+....+|..+++.++..+.+.. +
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~------g-------- 142 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG------G-------- 142 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------c--------
Confidence 678889999999999996 4566666789999999999999999999999999999888775311 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012670 425 GHLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
....|.+.++++++..++.++..+.
T Consensus 143 --Wr~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 143 --LQLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3667878788777776665555443
No 159
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.99 E-value=0.00056 Score=74.14 Aligned_cols=110 Identities=11% Similarity=0.033 Sum_probs=83.4
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012670 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++..+..+..++..++..+ +.+|+ .+++.+.++.++.+++.++..+..
T Consensus 206 ~l~s~~~lG~iiG~li~G~----LsDR~-------GRR~~lii~lil~~i~~ll~afa~--------------------- 253 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGG----LADKL-------GRKQCLLICLSVNGFFAFFSSFVQ--------------------- 253 (742)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3444444555555555555 55553 333566777777777666665432
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+++++++..++.|+|.+...|....++.+..|++.||..++++.....+|.++++.+...+.
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888999999999999999999999999999999999999999999999988776554
No 160
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.97 E-value=0.00038 Score=68.97 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=81.9
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+++..+..+...+..++..+ +.+|++ +++.+.++.++.+++.++....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~i~~~~~~~~~------------------- 88 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGF----LVDKFG-------PRYTTTLSLLLLAIPCLWAGLAV------------------- 88 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHH----HHHHhC-------chHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 344555566666667777776 445533 33567788888888887776542
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+++.+++..+++|++.+.. +....++.+..|++.|+..++++....++|..+++.+.+.+.
T Consensus 89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 15566777888899987654 567889999999999999999999888888888877776554
No 161
>PRK12382 putative transporter; Provisional
Probab=97.97 E-value=0.00024 Score=71.35 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=82.9
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+.+.....+...+.+|+.++ +.+|+ ++++.+.++.+..+++.+........ . ....
T Consensus 54 g~~~s~~~~~~~i~~~~~G~----l~Dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~-----------~--~~~~ 109 (392)
T PRK12382 54 GIAVGIQFLATVLTRGYAGR----LADQY-------GAKRSALQGMLACGLAGLAYLLAAIL-----------P--VSAP 109 (392)
T ss_pred HHHHHHHHHHHHHHhhhhhH----HHHhh-------cchHHHHHHHHHHHHHHHHHHhhhcc-----------c--cchh
Confidence 44455555666677777777 44553 33356667766655554332221000 0 0001
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+.+++++..+++|+|.+...+...+++.+..|++.|+..++.+......|..+|+.+.+.+.
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 256777888999999999999999999999999999999999999999999999999988764
No 162
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.97 E-value=0.00047 Score=70.05 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=86.6
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+....+..+...+..|+..+ +.+|. ++++.+.++.++.+++.......+
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~----l~dr~-------g~r~~l~~~~~~~~~~~~~~~~~~-------------------- 104 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGL----LADKF-------GRKPLMMWSIVAYSVGTGLSGLAS-------------------- 104 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHh-------CChHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 33444555555566666666 55553 334667888888888877766643
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+.+++..++.|+|.+...+....++.+..|++.|+..++++.....+|..+++.+.+.+.
T Consensus 105 -~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 105 -GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred -HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 66778888999999999999999999999999999999999999999999999988777553
No 163
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.96 E-value=0.00041 Score=72.02 Aligned_cols=109 Identities=14% Similarity=0.191 Sum_probs=83.7
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+.....+...+..++..+ +.+|. .+++.+.++.++.+++.+...+.. +
T Consensus 60 ~~~~~~~~~~~~~~~~g~----l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~---------------------~ 107 (496)
T PRK03893 60 LISAAFISRWFGGLLLGA----MGDRY-------GRRLAMVISIVLFSVGTLACGFAP---------------------G 107 (496)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHHh---------------------H
Confidence 333344444455555555 45553 333566778777888877776542 6
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+++.+..++.|++.+...+....++.+..|++.|+..++++....++|+.+++.+.+.+.
T Consensus 108 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 108 YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777888999999999999999999999999999999999999999999999999888764
No 164
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.95 E-value=0.00025 Score=73.92 Aligned_cols=116 Identities=6% Similarity=-0.034 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhh-
Q 012670 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAM- 379 (458)
Q Consensus 301 ~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~- 379 (458)
+++.+.+|.++.+++..++.+.. .+.+.+.+...++++|.++..|...+++.+..|++.
T Consensus 87 ~r~~~~~g~~~~~ig~~l~~~~~--------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~ 146 (500)
T PRK09584 87 TKRVIMLGAIVLAIGYALVAWSG--------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP 146 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch
Confidence 34567788888888876665431 133445567889999999999999999999988643
Q ss_pred -HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012670 380 -RSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 380 -~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
++...++++...++|..+|+.+.+.+.+. .++.+.|.+.++..+++.+.+++..+++
T Consensus 147 ~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~----------------~g~~~~F~i~~i~~~i~~i~~~~~~~~~ 204 (500)
T PRK09584 147 RLDGAFTMYYMSINIGSFFSMLATPWLAAK----------------YGWSVAFALSVVGMLITVVNFAFCQRWV 204 (500)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHh----------------hCHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 44578889999999999999999977531 1246677776665566665555544443
No 165
>PRK11043 putative transporter; Provisional
Probab=97.95 E-value=0.00054 Score=69.09 Aligned_cols=134 Identities=13% Similarity=0.043 Sum_probs=93.3
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
+..+..+...+..++.++ +.+|++ +++.+..+.++.+++.+..... .+
T Consensus 46 ~~s~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------~~ 93 (401)
T PRK11043 46 SLSLFLAGFALGQLLWGP----LSDRYG-------RKPVLLAGLSLFALGSLGMLWV---------------------ES 93 (401)
T ss_pred HHHHHHHHHHHHHHhhhh----HHhhcC-------CcHHHHHHHHHHHHHHHHHHHh---------------------cC
Confidence 344444444555566665 455533 3356677777777776666543 26
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
.+++++..++.|+|.....+...+.+.+..|++.++...+..+....++..+++.+.+.+.+..
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~---------------- 157 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF---------------- 157 (401)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------
Confidence 6777778899999988888888899999999999999999988888999999998888765211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 012670 426 HLDYFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~ 447 (458)
++...|.+.+++.++..+..+.
T Consensus 158 g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 158 GWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 2355666666666665554443
No 166
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.94 E-value=0.00026 Score=69.95 Aligned_cols=138 Identities=19% Similarity=0.140 Sum_probs=95.8
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.++...+..+...+..|+.++ +.+|.++| +.+.++.++.+++.+.....+
T Consensus 40 ~g~~~s~~~~~~~~~~~~~G~----l~d~~G~r-------~~~~~~~~~~~~~~~~~~~~~------------------- 89 (377)
T TIGR00890 40 VAIWFTLLLIGLAMSMPVGGL----LADKFGPR-------AVAMLGGILYGLGFTFYAIAD------------------- 89 (377)
T ss_pred HHHHHHHHHHHHHHHhhhhHH----HHHHcCcc-------chhHHhHHHHHHHHHHHHHHH-------------------
Confidence 344455555555666677676 45554332 456778888888887766653
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
+++.+.+...+.|++++...+.....+.+..| +.|+.+++++....++|..+++.+...+.+
T Consensus 90 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------------- 151 (377)
T TIGR00890 90 --SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN--------------- 151 (377)
T ss_pred --HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh---------------
Confidence 66777778889999999888888888888777 469999999999999998876666554431
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012670 423 NKGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
..++...|.+.++++++..+..++..
T Consensus 152 -~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 152 -LEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 12246677777777776665554443
No 167
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.94 E-value=1.6e-06 Score=90.57 Aligned_cols=93 Identities=18% Similarity=0.288 Sum_probs=3.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc----------
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN---------- 99 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~---------- 99 (458)
-...++++.++.|+|+.+..|.-.+.+=|..++++ -+..+++++....+|+++|.++|+...+.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 45778899999999999999999999999988877 68899999999999999999999876431
Q ss_pred -----------cc-chhhhHHHHHHHHHHHHHHHhcCccee
Q 012670 100 -----------AG-WGLGFGIPALFMGFAIASFFSGTSLYR 128 (458)
Q Consensus 100 -----------~g-w~~~F~i~~i~~~l~~ii~~~~~~~~~ 128 (458)
+| |+..|.+.+...++..+-++++-|+++
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 23 889999998877766666666555443
No 168
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.93 E-value=0.00056 Score=70.33 Aligned_cols=140 Identities=15% Similarity=0.022 Sum_probs=90.8
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012670 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
.....+...+.+|+.++ +.+|. .+++.+.++.++.+++.+...+.... ..+.
T Consensus 69 ~~~~~i~~~~~~~~~G~----l~Dr~-------g~k~~l~~~~~~~~i~~~~~~~~~~~-----------------~~~~ 120 (452)
T PRK11273 69 LSGISIAYGFSKFIMGS----VSDRS-------NPRVFLPAGLILAAAVMLFMGFVPWA-----------------TSSI 120 (452)
T ss_pred HHHHHHHHHHHHhhhhh----hhhcc-------CCchhHHHHHHHHHHHHHHHHhhhcc-----------------cccH
Confidence 33344444556666666 45553 33356778888887777766654210 1245
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH-hhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012670 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYL-SSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~i-g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
+.+++..++.+++++...|.....+.+..|++.|+..+|+++...++|+.+ ++.+...+.. . .
T Consensus 121 ~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~---------------~ 184 (452)
T PRK11273 121 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-F---------------N 184 (452)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-h---------------c
Confidence 566777889999999988888888899999999999999999999998754 4433222210 0 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 426 HLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
++...|.+.++++++..++.++..+
T Consensus 185 gw~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 185 DWHAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 2345677777666665555444443
No 169
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.90 E-value=0.0002 Score=73.19 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=84.1
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++..+..+...+..++.++ +.+| ..+++.+.++.++.+++.++...... .
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~----l~d~-------~grr~~~~~~~~~~~~~~~~~~~~~~------------------~ 124 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGW----LSDR-------FGRKKSLLIIALLFVIGAILMGLAAF------------------A 124 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhH----hhhh-------hhhHHHHHHHHHHHHHHHHHHHHhcc------------------c
Confidence 34444555555566666666 4444 33446677888888887777655321 1
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFIL 402 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~ 402 (458)
.+.+.+++..++.|+|.+...+...+++.+..|++.|+..+++++....+|..+++.+.
T Consensus 125 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 24456778899999999999999999999999999999999999999999999999988
No 170
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.90 E-value=0.00016 Score=73.36 Aligned_cols=117 Identities=10% Similarity=-0.049 Sum_probs=82.0
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+.+.....+..++..++.++ +.+|+++ ++.+..+.++.++++......... .
T Consensus 54 ~g~~~~~~~l~~~~~~~~~G~----l~dr~g~-------~~~l~~~~~~~~~~~~~~~~~~~~----------------~ 106 (417)
T PRK10489 54 VGLSVTLTGGAMFIGLMVGGV----LADRYDR-------KKLILLARGTCGLGFIGLALNAFL----------------P 106 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhHH----HhhhcCC-------ceEEEehHHHHHHHHHHHHHHHHc----------------C
Confidence 344555555555666666666 4455332 233445666666655554332100 0
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
..+.+++.+..++.+++.++..+...+.+.+..|++.++...+++....++|..+|+.+.+.+.
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 1255666778888999999999999999999999999999999999999999999999998765
No 171
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.90 E-value=0.00055 Score=69.05 Aligned_cols=109 Identities=15% Similarity=0.072 Sum_probs=84.1
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+++.....+...++.|+.++ +.+|++ +++.+.++.++.+++.+......
T Consensus 40 ~~~~~~~~~l~~~l~~~~~G~----laDr~g-------rr~vl~~~~~~~~~~~~~~~~~~------------------- 89 (393)
T PRK11195 40 QPLLQMFFVLAYIVLAPFVGA----FADSFP-------KGRVMFIANGIKLLGCLLMLFGI------------------- 89 (393)
T ss_pred HHHHHHHHHHHHHHHHhhhhH----hhhccC-------CchhhHHHHHHHHHHHHHHHHHH-------------------
Confidence 345555666666777888887 555543 33566777777766655544321
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+. +...+++|+++++..|...+++.+..|++.|+.+.|.+.....+|..+|+.+++.+.
T Consensus 90 --~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 90 --HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred --HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 456788999999999999999999999999999999999999999999999999875
No 172
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.00013 Score=72.03 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=98.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
.++++.+.+|+++.++..+++++.+ |.+.+++..++.|.-.++-.|+....+.+-.|++
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs~---------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~ 149 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFSP---------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK 149 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhhh---------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc
Confidence 6777889999999999999999863 7788888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHh--hhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012670 379 MRSLCSALSLLTTALGNYLSSFIL--TVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
.||+..++|+.+.++|+.+.+.+. +.+... .+....|.+-++++++..++.+...|..
T Consensus 150 eRG~~~siWn~shNiGGal~~~~~~la~~~~~----------------~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 150 ERGTWWSIWNTSHNIGGALAPLVALLAFFAFH----------------GGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred ccCceEEEehhhhhcccchHHHHHHHHHHHhc----------------cchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999998 444311 1245678888888888887777665543
No 173
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.85 E-value=0.00068 Score=68.52 Aligned_cols=116 Identities=16% Similarity=0.061 Sum_probs=81.1
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+.....+.+...+..|+.++ +.+| .++++.+..+.++.+++.+........
T Consensus 50 ~g~~~~~~~~~~~i~~~~~g~----l~dr-------~g~k~~l~~~~~~~~~~~~~~~~~~~~----------------- 101 (402)
T TIGR00897 50 SASAFTLYGIAAAISAWISGV----VAEI-------IGPLKTMMIGLLLWCVGHAAFIVFGLG----------------- 101 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHH-------cCcHHHHHHHHHHHHHHHHHHHHHhcc-----------------
Confidence 334445555555666777766 5555 344466777888777776544321100
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHH-HHhhHHhhhhh
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGN-YLSSFILTVVT 406 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~-~ig~~l~~~~~ 406 (458)
..+++.+++...+.|+|.....+...+.+.+..|++.||.++|+++...++|. .+++.+.+.+.
T Consensus 102 ~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 102 HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12455566778889999988888888889999999999999999999999996 57777766543
No 174
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.83 E-value=2.4e-08 Score=102.47 Aligned_cols=83 Identities=17% Similarity=0.284 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc---ccchhhh
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN---AGWGLGF 106 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~---~gw~~~F 106 (458)
+...+.+++++.|+|.|+..+....++.+..|++. |++...+......+|.+++..++-.+.+. .+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999999999999999999999998887 99999999999999999998776544333 4599999
Q ss_pred HHHHHHHHHHHH
Q 012670 107 GIPALFMGFAIA 118 (458)
Q Consensus 107 ~i~~i~~~l~~i 118 (458)
.++++..++.++
T Consensus 175 ~~~~~~~l~~~~ 186 (451)
T PF00083_consen 175 IFGAIPSLLVLL 186 (451)
T ss_pred cccccccccccc
Confidence 988765544333
No 175
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.82 E-value=0.00016 Score=74.52 Aligned_cols=132 Identities=19% Similarity=0.145 Sum_probs=92.3
Q ss_pred hhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHH
Q 012670 272 ISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIP 351 (458)
Q Consensus 272 ~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 351 (458)
+.-++.+++.++ +.+|++ +++.+..+.++.+++.++...... .+.+++++
T Consensus 87 ~~~~~~~~~~g~----l~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~-------------------~~~~~l~~ 136 (465)
T TIGR00894 87 YGQIIIQIPVGY----LAGKYV-------FKWSIGIGMFLSSVISIVIPWAAG-------------------GGIALVVF 136 (465)
T ss_pred HHHHHHHcchHH----HHHHhC-------cchhhHHHHHHHHHHHHHHHHHHH-------------------cCchHHHH
Confidence 334455555555 455543 235566777766666655443321 24566788
Q ss_pred HHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHH
Q 012670 352 QYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFF 431 (458)
Q Consensus 352 ~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 431 (458)
..+++|++++...|....++.+..|++.|+.++|+++....+|..+++.+.+.+.... .+| ...|
T Consensus 137 ~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-----~gw----------~~~f 201 (465)
T TIGR00894 137 CRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW-----GGW----------PMIF 201 (465)
T ss_pred HHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCC----------Ceeh
Confidence 8999999999999999999999999999999999999999999999999988765310 023 3456
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012670 432 WLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 432 ~~~a~i~~~~~v~~~~~ 448 (458)
.+.++++++..++.+..
T Consensus 202 ~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 202 YVFGIVGCAWSLLWFVF 218 (465)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 66666666555544443
No 176
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.81 E-value=0.0002 Score=72.59 Aligned_cols=143 Identities=16% Similarity=0.160 Sum_probs=104.8
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
...++-..-+++-+++.+ +.+|.+ ....+.+|+.+.++=++.+...+ +
T Consensus 411 ~~a~~~~gEI~~~ffs~k----lI~kiG-------Hv~v~~lgLa~~~~Rf~~~S~L~---------------------n 458 (618)
T KOG3762|consen 411 VSALCHAGEILFYFFSFK----LIEKIG-------HVNVMYLGLACNVGRFLYYSYLQ---------------------N 458 (618)
T ss_pred hhhhhccchHHHHHHHHH----HHHHhc-------ccceeeehhhHHHHHHHHHHHhc---------------------C
Confidence 344444444455555555 556543 33567788888888888888874 7
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHH-HHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTT-ALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~-~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+|..++-.+++++..+++..+..+++...+||+++..++|+..... ++|..+|+.+++.+....
T Consensus 459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f--------------- 523 (618)
T KOG3762|consen 459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF--------------- 523 (618)
T ss_pred chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee---------------
Confidence 7777777899999999999999999999999999999999976554 677777777777654221
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 012670 425 GHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 456 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~~ 456 (458)
+....|...++.+++..+.+..+.++.+++.
T Consensus 524 -g~~ttf~~~giAcl~~l~~~~~iq~~l~~~~ 554 (618)
T KOG3762|consen 524 -GARTTFRIFGIACLVTLALFISIQLLLKRRG 554 (618)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 2356688888888888877777777666654
No 177
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.80 E-value=0.00021 Score=73.08 Aligned_cols=262 Identities=15% Similarity=0.091 Sum_probs=148.3
Q ss_pred CCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHHHHHHHHHHHHhcCcc
Q 012670 47 GIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSL 126 (458)
Q Consensus 47 ~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~~l~~ii~~~~~~~ 126 (458)
.......+.++|...+++ |...+++...+...+..++|.+++++.+.+|.-.+|++++...+++.+...+..++
T Consensus 128 ~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 128 AIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred hhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 355566677888887776 99999999999999999999999999999999999999998888877765554443
Q ss_pred eeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCCccchhhhhhccccccccCCCCCCC
Q 012670 127 YRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNP 206 (458)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (458)
-.+++...+ . .. +.++..++.+|-... +
T Consensus 202 sl~~~~~~~--~---------------~~--------------------~~~~~~~~~~~~~~~---------------~ 229 (463)
T KOG2816|consen 202 SLQEKERSD--A---------------TL--------------------RELTPGSLDSSHVAD---------------A 229 (463)
T ss_pred ccCcccccc--c---------------cc--------------------cccCCCcccchhhhh---------------h
Confidence 222111110 0 00 000000111110000 0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcc-cCcCcc----ccchhhhHHHHHhhh
Q 012670 207 WILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFT-IPPASL----SSFDVISVIFWVPIY 281 (458)
Q Consensus 207 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~l----~~ln~~~vi~~~pl~ 281 (458)
+..... ..+.|..+.++.........-..-.+...++ +.+..++ ++ ...+.+ +.+..+..+++.|+
T Consensus 230 ~~~~~~--~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~-----yl~~~f~-w~~~~~s~~~~~~~~~~~i~~l~~~~~- 300 (463)
T KOG2816|consen 230 FQSLTK--VGPDRLLLLLLLVAFLSSLPEAGGASDVLLL-----YLKAKFG-WNKKEFSDLLSLVSILGIISQLLLLPL- 300 (463)
T ss_pred hhhhcc--cCCCccchHHHHHHHHHHHHHhcCceeEEEE-----EEeeecC-cCHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 000000 0111211111111111100000000100000 0111111 00 001111 22222222233333
Q ss_pred hhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHH
Q 012670 282 DKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEV 361 (458)
Q Consensus 282 ~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~ 361 (458)
..+..+ ..+.+..|++.-.++..+.++.+ + .|+.....+......
T Consensus 301 -------l~~~l~------~~~~i~lGl~~~~~~~~~~af~~---------------------~-~w~~~~~~v~~~~~~ 345 (463)
T KOG2816|consen 301 -------LSSILG------EKRLISLGLLSEFLQLLLFAFAT---------------------E-TWMMFAAGVVVALAG 345 (463)
T ss_pred -------HHHHHh------hhhHhhHHHHHHHHHHHHHHHhc---------------------c-chhhhHHHHHHHhhc
Confidence 322211 11367889999999999988874 3 234455566666777
Q ss_pred HhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc
Q 012670 362 CTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTT 410 (458)
Q Consensus 362 l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~ 410 (458)
.+.|...+++.+.++++.+|...++.....++.+.+++.+.+.+...+.
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999998865543
No 178
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.79 E-value=0.00058 Score=67.81 Aligned_cols=139 Identities=10% Similarity=-0.057 Sum_probs=87.2
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRM-GIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~-~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
+.+.....+..++.+|+.++ +.+|.++ ++.+ ..+.++.+++.++....
T Consensus 36 g~~~~~~~~~~~~~~~~~g~----l~Dr~g~-------r~~~~~~~~~~~~~~~~~~~~~-------------------- 84 (375)
T TIGR00899 36 GLFYTGSAIVGIAVSQLLAT----RSDYQGD-------RKGLILFCCLLAALACLLFAWN-------------------- 84 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhccCC-------chHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 33444555555667777666 4455332 2343 34455555554444432
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHH--HHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCC
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLC--SALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPD 420 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~--~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~ 420 (458)
.+++.+++...+.+.+.....|...+++.+..|++.|+.. .+......++|..+|+.+.+.+.+.
T Consensus 85 -~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~------------ 151 (375)
T TIGR00899 85 -RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG------------ 151 (375)
T ss_pred -chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh------------
Confidence 2555566666777777777888888888888888777644 6777788889999999888876421
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 421 NLNKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 421 ~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.+++..|.+.+++.++..+..++..+
T Consensus 152 ----~~~~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 152 ----FGFTVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12356677777766666655554433
No 179
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.79 E-value=2.4e-05 Score=79.68 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHH-HHHHHHHHHHhHhhhhcccc------ccch
Q 012670 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFY-FSINIGALISSSLIVWIQDN------AGWG 103 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~-~~~niG~~igp~l~g~l~~~------~gw~ 103 (458)
...+++..++.|++.+...+.....+.|++|+++ |++++++++ ....+|..+||+++|++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 4566778899999999999999999999999876 999999997 56789999999999999987 4699
Q ss_pred hhhHHHHHHHHHHHHHHHhcCc
Q 012670 104 LGFGIPALFMGFAIASFFSGTS 125 (458)
Q Consensus 104 ~~F~i~~i~~~l~~ii~~~~~~ 125 (458)
+.|++.++..+++.+.+++..+
T Consensus 382 ~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999888766666655444333
No 180
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.78 E-value=0.00049 Score=71.05 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh--h
Q 012670 302 LQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA--M 379 (458)
Q Consensus 302 ~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~--~ 379 (458)
++.+.+|.++.+++.+++...+ .+.........+..+|.++..+...+++.+..|++ .
T Consensus 76 rr~iliG~il~~lg~lll~~~~--------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~ 135 (493)
T PRK15462 76 RMAVMLGALLMAIGHVVLGASE--------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR 135 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc
Confidence 3567888888888876554321 11222444556677888888888889999999875 7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012670 380 RSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 380 ~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
|+...++.+...++|+.+++.+.+.+.+. .+++..|.+.++..+++.+.++...|++
T Consensus 136 R~sgf~i~Y~~~nlG~~iap~l~g~L~~~----------------~Gw~~~F~iaaigm~l~li~~~~~~~~l 192 (493)
T PRK15462 136 RDGGFSLMYAAGNVGSIIAPIACGYAQEE----------------YSWAMGFGLAAVGMIAGLVIFLCGNRHF 192 (493)
T ss_pred ccceehHHHHHHHHHHHHHHHHHHHHHhh----------------hChHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999999999999987531 1245667776665555555555444343
No 181
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.77 E-value=0.0012 Score=68.81 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=91.5
Q ss_pred ccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 012670 260 TIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQN 339 (458)
Q Consensus 260 ~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
....+.++....+..++++++.+. +.+| .++++.+...-++.++....+.+....
T Consensus 44 ~~~valv~~a~~LP~~Llsl~aG~----laDr-------~drrrili~~~~~~~~~~~~L~~l~~~-------------- 98 (524)
T PF05977_consen 44 PLMVALVQAASTLPILLLSLFAGA----LADR-------FDRRRILILSQLLRALVALLLAVLAFF-------------- 98 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----Hhhc-------ccchHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 344555677777777888888887 4555 334456666666555544444443221
Q ss_pred CCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 340 VSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 340 ~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
...+.|.+++..++.|++..+..|.-++.+-+.+|++.-..+.++.....+++..+||.+++.+..
T Consensus 99 --~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 99 --GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred --CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 124677778888999999999999999999999999999999999999999999999999998754
No 182
>PTZ00207 hypothetical protein; Provisional
Probab=97.77 E-value=0.00092 Score=70.40 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=86.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
..+++.+.+|.++.++|.++..+.... ....+.+.+.+..++.|+|++...+.....+.+..| +
T Consensus 88 ~G~R~vllig~ll~~iG~ll~ala~~~---------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~ 151 (591)
T PTZ00207 88 LGPRPIFVLSMTVFCLGTLLFALTFQE---------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-S 151 (591)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhcc---------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-h
Confidence 445577889999999998887764210 001267778888999999999999999999999887 6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012670 379 MRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
.||.++|++....++|..+.+.+...+.. .+...+|.+++++.++..++.+.+.+..
T Consensus 152 ~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----------------~~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 152 NRGAVVAIMKTFTGLGSAILGSIQLAFFS-----------------DNTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 78999999999999999864444443321 1134556777777777666655544433
No 183
>TIGR00898 2A0119 cation transport protein.
Probab=97.76 E-value=0.00025 Score=73.88 Aligned_cols=132 Identities=11% Similarity=0.109 Sum_probs=96.0
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+..+.+..+..++..++.++ +.+|++ +++.+.++.++.+++.+...+.
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~----l~Dr~G-------rr~~~~~~~~~~~i~~~~~~~~--------------------- 177 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGY----LSDRFG-------RKKVLLLSTLVTAVSGVLTAFS--------------------- 177 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHH----hhhhcc-------chHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 33445555555566666666 455543 2355677777777776666553
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+++.+++..++.|++.+...+....++.+..|++.|+...++......+|..+++.+...+. +
T Consensus 178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~------- 241 (505)
T TIGR00898 178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------D------- 241 (505)
T ss_pred ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------H-------
Confidence 267778889999999999999999999999999999999999999999999998888776543 1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 012670 424 KGHLDYFFWLLAGLSIFNMLLYV 446 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~ 446 (458)
+...|.+.++.+++..+..+
T Consensus 242 ---wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 242 ---WRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH
Confidence 35566776666665555443
No 184
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.76 E-value=0.00059 Score=70.27 Aligned_cols=135 Identities=16% Similarity=0.058 Sum_probs=90.2
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012670 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++.........+.+|+..+ +.+|++ +++.+..+.++.+++.++....+
T Consensus 58 ~~~s~~~~~~~~~~~~~G~----l~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~--------------------- 105 (455)
T TIGR00892 58 WISSIMLAVLYAGGPISSI----LVNRFG-------CRPVVIAGGLLASLGMILASFSS--------------------- 105 (455)
T ss_pred HHHHHHHHHHHHhhHHHHH----HHHHcC-------chHHHHhhHHHHHHHHHHHHHhh---------------------
Confidence 3333444444556666665 555543 33566777777777777665532
Q ss_pred hhHHHHHH-HHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012670 345 SIFWQIPQ-YFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 345 s~~~li~~-~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
+.+.++.. .++.|++.+...++....+.+..| +.|+..+|+++....+|..+++.+.+.+.+..
T Consensus 106 ~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-------------- 170 (455)
T TIGR00892 106 NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-------------- 170 (455)
T ss_pred hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--------------
Confidence 44444433 467899988877777777777775 78999999999999999999999888765321
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHh
Q 012670 424 KGHLDYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~ 448 (458)
++...|.+.++++++..+..+++
T Consensus 171 --gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 171 --GWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHHh
Confidence 24677888887776665544433
No 185
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=97.75 E-value=0.009 Score=58.23 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=58.8
Q ss_pred CCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhh
Q 012670 27 TPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGF 106 (458)
Q Consensus 27 ~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F 106 (458)
.+-+...+.+-+.+.|+|.|+ .|...++-.+..|... |..-.=.. .-..+|.++.-.+.=.+..++||||..
T Consensus 162 ~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l 233 (528)
T KOG0253|consen 162 ASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLL 233 (528)
T ss_pred CCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344777888889999999999 8999998888887765 54433333 566678888877776667788999955
Q ss_pred HHHH-HHHHHHH
Q 012670 107 GIPA-LFMGFAI 117 (458)
Q Consensus 107 ~i~~-i~~~l~~ 117 (458)
.... ++++.+.
T Consensus 234 ~~~~~pl~~~a~ 245 (528)
T KOG0253|consen 234 FTSSTPLMFAAR 245 (528)
T ss_pred HHHHhHHHHHHH
Confidence 4444 4444433
No 186
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.75 E-value=0.0015 Score=67.72 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHH
Q 012670 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSL 382 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~ 382 (458)
+.+.++.++.+++.++..... +.+.+++..++.|++++... ....++.+..|++.||.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~---------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~ 159 (476)
T PLN00028 102 YGSAFLLMLTAPAVFCMSLVS---------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGT 159 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeH
Confidence 556677777777766655532 55566677888999988654 45667889999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 012670 383 CSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 383 ~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~ 448 (458)
.+|+++...++|..+++.+...+.......+. .+..++...|.+.++++++..++.+++
T Consensus 160 a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~-------~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 160 ANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA-------PSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------cchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888887766554322110000 001134677888888777666555544
No 187
>PRK10133 L-fucose transporter; Provisional
Probab=97.74 E-value=0.0025 Score=65.33 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=84.0
Q ss_pred ccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 012670 265 SLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI 344 (458)
Q Consensus 265 ~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
.+.....+...+.+++..+ +.+|+ .+++.+.+|.++.+++.++...... ..
T Consensus 65 l~~~~~~~g~~i~~~~~g~----l~dr~-------G~r~~l~~g~~~~~~~~~l~~~~~~------------------a~ 115 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGI----LMKKL-------SYKAGIITGLFLYALGAALFWPAAE------------------IM 115 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHHHh------------------cC
Confidence 3344444555566666655 55553 4447788899988888876532110 13
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+++.+++..+++|+|.+...+..+.++.+..|++.++..+++.+....+|..+++.++..+.
T Consensus 116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778889999999999999999999999888887777899999999999999998877543
No 188
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.73 E-value=0.00092 Score=76.91 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+++.+++..++.|++.++..|...+++.+..|++.|+.++|+.....++|..+|+.+++.+..
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999999999999999999999999999999999988754
No 189
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.70 E-value=0.0018 Score=66.62 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=105.5
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-CC--
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRM-GIGLFLSVLCMSAAAVVEINRLRLARELELV-DQ-- 338 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~-~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~-- 338 (458)
.+.+..+.++..++.+|+.+++.++...|+++ ++.+ ..|.+..++++.++....... .++ +.
T Consensus 41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GR-------Rrp~il~g~~~~~~~l~ll~~~~~~~-------~~~~~~~~ 106 (477)
T TIGR01301 41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGR-------RRPFIAAGAALVAFAVILIGFAADIG-------HLFGDNLD 106 (477)
T ss_pred HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCC-------hHHHHHHHHHHHHHHHHHHHhCchhh-------hhcccccc
Confidence 34456677778888888888876655444432 2333 445666777767666532110 000 00
Q ss_pred CCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhH--HHHHHHHHHHHHHHHHHhhHHhhhhhhh--h---cc
Q 012670 339 NVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMR--SLCSALSLLTTALGNYLSSFILTVVTYF--T---TA 411 (458)
Q Consensus 339 ~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~--g~~~g~~~~~~~ig~~ig~~l~~~~~~~--~---~~ 411 (458)
+.......+..++...+..++.....++.-+++.|..|++.| +.+.+......++|+.+|+.+++..... . .+
T Consensus 107 ~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~ 186 (477)
T TIGR01301 107 KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKT 186 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccc
Confidence 001112234556667777888888889999999999999866 6789999999999999999998864211 0 00
Q ss_pred CCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012670 412 GGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 452 (458)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~ 452 (458)
+.+ +.. ..++...|.+.+++.++..++-.+..|..
T Consensus 187 ~~~-~~~-----~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 187 EAC-GVS-----CANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred ccc-ccc-----cchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 000 001 12466778777777777666666555544
No 190
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.70 E-value=0.002 Score=65.90 Aligned_cols=89 Identities=11% Similarity=-0.001 Sum_probs=66.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
+.+++.+.++.++.++..+..++... +...+++.+++..++.|++ +...+.....+.+..|++
T Consensus 97 ~G~R~v~~~~~ll~~i~~~~~~~a~~----------------~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~ 159 (462)
T PRK15034 97 FGGRRWTVFSTAILIIPCVWLGIAVQ----------------NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA 159 (462)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHc----------------ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh
Confidence 34446778888888888777765310 0113777888889999998 668899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhh
Q 012670 379 MRSLCSALSLLTTALGNYLSSFILTV 404 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~ 404 (458)
.||++.|++....++|..++..+...
T Consensus 160 ~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 160 KQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999966666666655555543
No 191
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.62 E-value=0.0038 Score=63.48 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=75.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
.++++.+.++.+..++..++.++.. +.+.+.+..++.|++|+... ....++++..|++
T Consensus 89 lG~K~vL~l~~l~Wsl~t~L~~fa~---------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k 146 (511)
T TIGR00806 89 LRYKPVLVLQALSFVCVWLLLLLGT---------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS 146 (511)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH
Confidence 3444677888888877777777753 77889999999999999999 9999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 012670 379 MRSLCSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
.|++++|+++....+|.++++.+++.+
T Consensus 147 ER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 147 RYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999984
No 192
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.60 E-value=0.0029 Score=65.32 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=94.0
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS 345 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (458)
..+...+...+.+++..+ +.+|+ .+++.+.++.++.+++.+.....+.-. .+...+....
T Consensus 60 ~~s~~~ig~~~~~~~~G~----l~dr~-------Grr~~~~~~~~l~~i~~~~~~~~~~~~---------~~~~~~~~~~ 119 (479)
T PRK10077 60 CVASALIGCIIGGALGGY----CSNRF-------GRRDSLKIAAVLFFISALGSAWPEFGF---------TSIGPDNTGY 119 (479)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHh-------ccHHHHHHHHHHHHHHHHHHHhhcccc---------ccccccchhH
Confidence 333444444555566665 55553 333667777777777766555421000 0000000123
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
++.+++..+++|++.+...|...+++.+..|++.||.+++++.....+|..+++.+...+..... ..+ .+..
T Consensus 120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~~----~~~~ 191 (479)
T PRK10077 120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGD----ASW----LNTD 191 (479)
T ss_pred HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCc----ccc----cccC
Confidence 45567788999999999999999999999999999999999999999999888776654432110 001 1112
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 012670 426 HLDYFFWLLAGLSIFNMLLY 445 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~ 445 (458)
++.+.|.+.++.+++..+..
T Consensus 192 gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 192 GWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 34566776666665554433
No 193
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.57 E-value=0.0065 Score=63.22 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHH
Q 012670 305 MGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCS 384 (458)
Q Consensus 305 ~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~ 384 (458)
+.++.++.+++....++.+. ..+.+++.+..++.+++.....+...+++.+..|++.||...
T Consensus 84 ll~~~i~~~~~~~~~a~~~~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~ 145 (491)
T PRK11010 84 LLATQLLLLVAIAAMGFLEP------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGA 145 (491)
T ss_pred HHHHHHHHHHHHHHHHHcCC------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHH
Confidence 55666666666666555321 135677777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 012670 385 ALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 385 g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~ 447 (458)
++......+|..+++.+...+.+. ..+....|.+.++++++..+..++
T Consensus 146 ~i~~~g~~lG~llg~~l~~~l~~~---------------~~GWr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 146 AISVLGYRLAMLVSGGLALWLADR---------------YLGWQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---------------ccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998888766420 012466777777776666554443
No 194
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.002 Score=66.56 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
|.+.++...++.|+.|....|....++..-..++.||..+|+|+....+|+++|+.+..-+.+.......
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~---------- 202 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL---------- 202 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc----------
Confidence 6777888899999999999999999999999999999999999999999999999998876432211111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh
Q 012670 425 GHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
.++.+.|.+-++++++..++.+++.
T Consensus 203 ~gW~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 203 AGWRWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred CCceeehhHHHHHHHHHHheEEEEe
Confidence 3357889999999988887655443
No 195
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.49 E-value=0.0014 Score=68.20 Aligned_cols=110 Identities=11% Similarity=0.131 Sum_probs=79.9
Q ss_pred HHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHH
Q 012670 277 WVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLL 356 (458)
Q Consensus 277 ~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~ 356 (458)
..++...+.-++.+|+ .+++.+.++.++.+++.++.++.+.+.. -| .+.+..++...+++
T Consensus 69 ~~~ig~~~~G~l~Dr~-------Grr~~l~~~~~l~~i~~~~~a~~~~~~~-----~g--------~~a~~~l~~~R~l~ 128 (490)
T PRK10642 69 IRPLGGLFFGMLGDKY-------GRQKILAITIVIMSISTFCIGLIPSYAT-----IG--------IWAPILLLLCKMAQ 128 (490)
T ss_pred HHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHhcccHHH-----HH--------HHHHHHHHHHHHHH
Confidence 3344444444466664 4447788899999888888777532100 00 01122467788999
Q ss_pred hHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 357 GAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 357 g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
|+|.+...+...+++.+..|++.||.+++++.....+|..+|+.+...+.
T Consensus 129 G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~ 178 (490)
T PRK10642 129 GFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIS 178 (490)
T ss_pred HhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888888887765543
No 196
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.48 E-value=0.0029 Score=62.57 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHH
Q 012670 305 MGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCS 384 (458)
Q Consensus 305 ~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~ 384 (458)
+..+.++.+++...+.+... ..+.+++....++.+++.....+...+++.+..|++.|+...
T Consensus 60 l~~~~~~~~~~~~~l~~~~~------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~ 121 (356)
T TIGR00901 60 LVLTQVLLLSLLLILSFLVP------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGS 121 (356)
T ss_pred HHHHHHHHHHHHHHHHcCCc------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHH
Confidence 35666666666555544321 125555666677788888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 012670 385 ALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYV 446 (458)
Q Consensus 385 g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~ 446 (458)
++.....++|..+++.+...+...... ++.+.......|.+.+++.++..+..+
T Consensus 122 ~~~~~~~~~G~~~~~~l~~~l~~~~g~--------~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 122 TIYIVGYRAGMLLSGSLALVLASPEFA--------NTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc--------ccccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998776532210 001111245667776666555444433
No 197
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.48 E-value=0.002 Score=64.21 Aligned_cols=61 Identities=13% Similarity=-0.036 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc
Q 012670 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD 98 (458)
Q Consensus 32 ~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~ 98 (458)
...+.|..+.+.++-.+.-..+.+-+-||+++| |..+..+=.++..+|.++|.++.+.+..
T Consensus 141 ~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 141 PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred hhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence 466788899999999888888889999999987 9999999999988999988888877754
No 198
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.48 E-value=0.00062 Score=78.33 Aligned_cols=63 Identities=17% Similarity=0.049 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+++++++..+++|+++++..|...+.+.+..|++.++.++|+.....++|.++|+.+++.+..
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888999999999999999999999999999999999999999999999999999998763
No 199
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.48 E-value=0.0017 Score=67.77 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=81.5
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012670 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
.....+..++..++..+ +.+|+ .+++.+.++.++..++.++....... ....+.
T Consensus 62 ~~~~~ig~~ig~~~~g~----l~d~~-------Grr~~~~~~~~~~~v~~~~~~~~~~~---------------~~~~~~ 115 (502)
T TIGR00887 62 NGSASIGTLAGQLFFGW----LADKL-------GRKRVYGMELIIMIIATVASGLSPGS---------------SPKSVM 115 (502)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhh-------ccHHHHHHHHHHHHHHHHHHHHccCc---------------ccchHH
Confidence 33333334444555554 55553 33356677777777776665543100 001135
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+++..++.|++++...+....++.+..|++.||..+++.+....+|..+++.+...+.
T Consensus 116 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 116 ATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999999998877654
No 200
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.48 E-value=0.00051 Score=72.86 Aligned_cols=152 Identities=17% Similarity=0.176 Sum_probs=109.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-----hhhc--------------cc-C-CC------CCccchhH
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEIN----RLRLA-----RELE--------------LV-D-QN------VSVPISIF 347 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~----~~~~~-----~~~~--------------~~-~-~~------~~~~~s~~ 347 (458)
.++.+.+++|.+++++|.++..+.+.. .++.. .++. .. . +. .++...+.
T Consensus 159 ~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (735)
T KOG3626|consen 159 GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFL 238 (735)
T ss_pred cCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHH
Confidence 455577899999999999988875332 11110 0000 00 0 00 11112233
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc---------cCCCcCCC
Q 012670 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTT---------AGGKTGWI 418 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~---------~~~~~~~~ 418 (458)
.+++++++.|+|+..+.+.+.+++.|.+-++.-.++.|+.+.+..+|-++|..+++++.+..- ++.|..|+
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI 318 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI 318 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh
Confidence 566789999999999999999999999999999999999999999999999999998866422 12233443
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 012670 419 PDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 456 (458)
Q Consensus 419 ~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~~ 456 (458)
+.++.-|.+.+.+.++..+.++++-|.+++++
T Consensus 319 ------GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 319 ------GAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 33455588899999999999999888887644
No 201
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.47 E-value=0.0023 Score=63.34 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=79.3
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
++...++.+...+..++.++ +.+|++ +++.+.++.++..++.+.. ..
T Consensus 38 g~~~s~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~-~~--------------------- 84 (355)
T TIGR00896 38 GLLTALPVLCFAVLAPLAPW----LARRFG-------EERSVAAGLLLIAAGILIR-SA--------------------- 84 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHH----HHHHhC-------chHHHHHHHHHHHHHHHHH-Hh---------------------
Confidence 44455566666677777777 455533 3355677777766665544 21
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.+.+.+++..++.++|.+...+.....+.+..| +.|+..+++++...++|..+++.+.+.+.
T Consensus 85 ~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 85 PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 255666778899999999988888888888776 58999999999999999999988877664
No 202
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.45 E-value=0.00057 Score=69.50 Aligned_cols=64 Identities=5% Similarity=0.014 Sum_probs=53.3
Q ss_pred chhHHHHH-HHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 344 ISIFWQIP-QYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 344 ~s~~~li~-~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
++++.+.+ ..++.|.+.-+++....+.-+++.-+..+|.++|++.+...++..+|+.+...+..
T Consensus 385 v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 385 VPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred cChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence 34443344 35788888888899999999999999999999999999999999999988887653
No 203
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.42 E-value=2.6e-05 Score=81.58 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=3.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--h-h-------hccc-------------C--C--CCCccchhHHH
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRL--A--R-E-------LELV-------------D--Q--NVSVPISIFWQ 349 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~--~--~-~-------~~~~-------------~--~--~~~~~~s~~~l 349 (458)
.++.+.+++|.+++++|.+++.+.+.....+ . . . ..+- + + +......++.+
T Consensus 65 ~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 144 (539)
T PF03137_consen 65 GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVF 144 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHH
Confidence 4556778999999999999987654332111 0 0 0 0000 0 0 11112234667
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhc------------cCCCcCC
Q 012670 350 IPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTT------------AGGKTGW 417 (458)
Q Consensus 350 i~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~------------~~~~~~~ 417 (458)
++++++.|+|..-..+.+.+|+.|.++++.-+.+.|+.+....+|.++|..+++.+.+..- +++|..|
T Consensus 145 ~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~W 224 (539)
T PF03137_consen 145 ILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRW 224 (539)
T ss_dssp -------SSS----------------------------------------------------------------------
T ss_pred HHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccH
Confidence 7899999999999999999999999999999999999999999999999999987765311 1223345
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012670 418 IPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 418 ~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
+ +.++.-|.+.+++.++..+.++.+-|++++.
T Consensus 225 v------GAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 225 V------GAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp --------------------------------------
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 4 2334457788888888888888877777654
No 204
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.39 E-value=0.0016 Score=66.53 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=79.5
Q ss_pred HHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHH
Q 012670 276 FWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFL 355 (458)
Q Consensus 276 ~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 355 (458)
+..|+...+.-++.+|+ .+++.+.++.++.+++.+...+.+.+. ..+ ..+...+++..++
T Consensus 74 ~~~~ig~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~~l~~~R~l 133 (432)
T PRK10406 74 LMRPIGGWLFGRIADKH-------GRKKSMLISVCMMCFGSLVIACLPGYE-----TIG--------TWAPALLLLARLF 133 (432)
T ss_pred HHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHHHHHHhhcCCch-----hHH--------HHHHHHHHHHHHH
Confidence 33345555445566664 344677888888888877766532100 000 0134567788999
Q ss_pred HhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 356 LGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 356 ~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+|+|++...|...+++.+..|++.||.+.++.......|..+++.+...+.
T Consensus 134 ~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 134 QGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred HHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888888877655544
No 205
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.39 E-value=0.0074 Score=60.92 Aligned_cols=109 Identities=14% Similarity=-0.016 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHH
Q 012670 304 RMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLC 383 (458)
Q Consensus 304 ~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~ 383 (458)
.+.++.++.++++..+.+.+. ..+.+.+.+..++.++......|...+++.+..|++.|+.+
T Consensus 70 ~l~~~~~~~~l~~~~l~~~~~------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~ 131 (402)
T PRK11902 70 WLLLTQVGLAASIAAMAFCPP------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAG 131 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHH
Confidence 356666777666666554311 12566666677778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 012670 384 SALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLY 445 (458)
Q Consensus 384 ~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~ 445 (458)
.++......+|..+++.+...+.+. + .+....|.+.+++.++..+..
T Consensus 132 ~~~~~~g~~~g~i~g~~l~~~l~~~--------~-------~gw~~~f~i~a~~~l~~~l~~ 178 (402)
T PRK11902 132 AAVKVLGYRLAMLVSGGLALWLADR--------V-------LGWGNTYLLMAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhc--------c-------cCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887766421 0 123566777777666555443
No 206
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.003 Score=64.86 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=93.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
+..++.+..+.++.+++-++...... .+.+.+++..+++|++++...|.......+-+|++
T Consensus 100 ~G~r~v~~~~~~~sa~~t~l~P~aa~-------------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~ 160 (466)
T KOG2532|consen 100 FGARRVFFISGLISALLTLLTPLAAS-------------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN 160 (466)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHH-------------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH
Confidence 34447788888888888888777652 35567788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 379 MRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
.|++..++......+|.+++-.+.+.+-+. +-+| ...|-+.++++++..++.+.+.+
T Consensus 161 Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-----~~GW----------~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 161 ERSTFIAILTAGSQLGTIITMPVSGLLCES-----SLGW----------PSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-----CCCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999888877532 1234 45567777777777766655544
No 207
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.34 E-value=0.002 Score=65.62 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=90.9
Q ss_pred ccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchh
Q 012670 267 SSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISI 346 (458)
Q Consensus 267 ~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 346 (458)
..+..+.-.+..|+.+.+.++.-.|.++| +..+..+.++.+++.+++...... ......
T Consensus 41 ~~~~~i~~~i~~p~~G~lsDr~~~r~Grr------r~~i~~~~~~~~i~~~~~~~~~~~---------------~~~~~~ 99 (437)
T TIGR00792 41 FLVARILDAITDPIMGNIVDRTRTRWGKF------RPWLLIGAIPFSIVLVLLFTTPDF---------------SATGKL 99 (437)
T ss_pred HHHHHHHHHhccchheEeeecCCCCCCCc------chhHHHhHHHHHHHHHHHHhCCCC---------------CcchHH
Confidence 33344444555566666444432222211 223566777777766665442100 001235
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhccc-chhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCc
Q 012670 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQS-PDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKG 425 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~a-P~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
+|.+..+++.+++..+..++..++..+.. |++.|+...+..+....+|..+++.+...+......+ .+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~---------~~~~ 170 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGG---------DDKF 170 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------cccc
Confidence 66777888889999998888888888877 5788999999999998998888777665544221100 0112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 426 HLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 426 ~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
++...+.+.++++++..++.++..+
T Consensus 171 g~~~~~~i~~~l~~~~~~~~~~~~~ 195 (437)
T TIGR00792 171 GWFMFALVLALIGVVSLIICFFGTK 195 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 3455566666666666555444333
No 208
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.058 Score=54.94 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=90.5
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CC-CCCc
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELV--DQ-NVSV 342 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~--~~-~~~~ 342 (458)
+..++.+.+-+..-+.+-....+-+|. ++ +.....+.+|.++.-+++++...-. +++..+- ++ +...
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~ri-r~---fg~~~~~~~~~~~~~~~~~li~l~~------p~dap~~~t~~~~~~~ 349 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRI-RG---FGRKPTVLIGIIIHLIGFLLIHLSF------PNDAPLRPTDSPPLLF 349 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhh-hh---cccCcchhHHHHHHHHHHHHHhccc------cccCCCCCCccccccc
Confidence 444555555554444333333333332 22 5555667777777666655544321 1111110 11 1112
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
..+.....+..++.|++..+.....+..+.... ++.|..+..++-+-.++++.++........
T Consensus 350 ~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~---------------- 412 (461)
T KOG3098|consen 350 TPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLL---------------- 412 (461)
T ss_pred ccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhH----------------
Confidence 223445566789999999999999999999999 567778888888888888876655444221
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012670 423 NKGHLDYFFWLLAGLSIFNMLLYVVCAKKYK 453 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~ 453 (458)
.....+...+++.+...+++...++.+
T Consensus 413 ----l~~~~l~~~i~~~i~~~~~~~~~~~~~ 439 (461)
T KOG3098|consen 413 ----LYIYTLGLPIFCVIATTIFFIVAERTQ 439 (461)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234555666666666666655553
No 209
>PRK09952 shikimate transporter; Provisional
Probab=97.25 E-value=0.0031 Score=64.62 Aligned_cols=112 Identities=8% Similarity=0.116 Sum_probs=81.8
Q ss_pred HHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHH
Q 012670 275 IFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYF 354 (458)
Q Consensus 275 i~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 354 (458)
.+..|+...+.-++.+|+ .+++.+.++.++.+++.++.++.+.... .+ ..+++.++...+
T Consensus 74 ~~~~~~g~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~~l~~~R~ 133 (438)
T PRK09952 74 FLFRPLGGVVFGHFGDRL-------GRKRMLMLTVWMMGIATALIGLLPSFST-----IG--------WWAPVLLVTLRA 133 (438)
T ss_pred HHHHhhHHHHHHHHHHhh-------ccHHHHHHHHHHHHHHHHHHhcCCcHHH-----HH--------HHHHHHHHHHHH
Confidence 345566666666677774 4446778888888888777766431100 00 011224667789
Q ss_pred HHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 355 LLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 355 l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
++|++++...|....++.+..|++.||..++.......+|..++..+...+.
T Consensus 134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988877766554
No 210
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.24 E-value=0.0021 Score=63.89 Aligned_cols=95 Identities=8% Similarity=0.115 Sum_probs=71.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
..+++.+.++.++.+++..+....+.... ......+.+++..+++|++.+...+....++.+..|++
T Consensus 62 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~ 128 (394)
T TIGR00883 62 IGRKKTLVITLLMMGIGTLLIGLLPSYAT-------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG 128 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCChhh-------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc
Confidence 34446677888888888777665421100 00011234667789999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 379 MRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.|+..++.......+|..+++.+...+.
T Consensus 129 ~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 129 KRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877654
No 211
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.13 E-value=0.023 Score=57.17 Aligned_cols=90 Identities=8% Similarity=-0.026 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhH--HHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMR--SLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~--g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
+.+++.+...+.+.......|...+++.+..|++.| +.+.+..+...++|..+|+.+.+.+.+..
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------------- 170 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------------- 170 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-------------
Confidence 444444444444444456678888888776665533 45678888899999999999999775321
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 423 NKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
++...|.+.++++++..+..++..+
T Consensus 171 ---gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 171 ---SFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 2456677777777666665554444
No 212
>PRK15075 citrate-proton symporter; Provisional
Probab=97.12 E-value=0.011 Score=60.42 Aligned_cols=108 Identities=6% Similarity=0.046 Sum_probs=76.4
Q ss_pred hhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhH
Q 012670 279 PIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGA 358 (458)
Q Consensus 279 pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ 358 (458)
|+...+.-++.+|+ .+++.+..+.++..++..+.++.+.... . + ......+++..+++|+
T Consensus 70 ~ig~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~l~~~~~~~~~-~----~--------~~~~~~l~~~R~l~G~ 129 (434)
T PRK15075 70 PLGAIVLGAYIDRV-------GRRKGLIVTLSIMASGTLLIAFVPGYAT-I----G--------LAAPLLVLLGRLLQGF 129 (434)
T ss_pred hhHHHHHHHHhhhh-------chHHHHHHHHHHHHHHHHHHHhCCcHHH-H----H--------HHHHHHHHHHHHHhhc
Confidence 44444444566664 4446778888888888777776421100 0 0 0001235677899999
Q ss_pred HHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 359 AEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 359 ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+...+....++.+..|++.||..+++.....++|..+++.++..+.
T Consensus 130 ~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 130 SAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred cccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888888777776653
No 213
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.07 E-value=0.015 Score=62.41 Aligned_cols=253 Identities=9% Similarity=-0.063 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc-chhh----
Q 012670 31 YAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG-WGLG---- 105 (458)
Q Consensus 31 ~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g-w~~~---- 105 (458)
.......++.++++.++..++-.++.+++.++.+ .+++.+..++|++..+.+.+. .+++..+..... +...
T Consensus 82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~~ 157 (654)
T TIGR00926 82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGCQ 157 (654)
T ss_pred chHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccC
Confidence 4666778899999999999999999999998876 245567999999999988885 555666654433 3221
Q ss_pred --h-HHHHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhhccccCCCcchhhhccchhhhccCCcccccCC
Q 012670 106 --F-GIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASFRKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSD 182 (458)
Q Consensus 106 --F-~i~~i~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (458)
| +..++.+++.++.++.+...++..++.+.......++......... +.....
T Consensus 158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~------------------------~~~~~~ 213 (654)
T TIGR00926 158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR------------------------KRFSTR 213 (654)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH------------------------HhhccC
Confidence 2 2455666777777787776665555543332223333221111000 000000
Q ss_pred ccchhhhhhccccccccCCCCCCCcccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcc
Q 012670 183 ELRCLDKAAVVSDAEIKSGDFSNPWILC--TVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFT 260 (458)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 260 (458)
+.+| ...|..+ .....++.+...+++.++...+.+++.+.+.......+..++++..+.+.
T Consensus 214 ~~~~-----------------~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~ 276 (654)
T TIGR00926 214 SEHW-----------------PLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG 276 (654)
T ss_pred Cccc-----------------chhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC
Confidence 0000 0011111 12223567888888999999999999889888888888888887644333
Q ss_pred cCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012670 261 IPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLAR 331 (458)
Q Consensus 261 ~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~ 331 (458)
..+...+.++.+-.++..++...+..++..++.++ ..++.++.-+.+.+.++.+.+........++-+
T Consensus 277 g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~~~ 344 (654)
T TIGR00926 277 GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKVNP 344 (654)
T ss_pred CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445677888888888888888888999887554 567888999999999998888888776655544
No 214
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.00 E-value=0.00073 Score=68.67 Aligned_cols=86 Identities=16% Similarity=0.041 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhH-HHHHHHHHHHHHhHhhhhccccccchhhhHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNW-FYFSINIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~-~~~~~niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
+.+.+++..++.+++.+...+.....+.+.+|++. |++.++. +....++|..+||.++|++.|..||+..|.+
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~ 387 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI 387 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 56667777888888888888888888889888765 7777766 6778899999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 012670 109 PALFMGFAIASFF 121 (458)
Q Consensus 109 ~~i~~~l~~ii~~ 121 (458)
.++..++..++.+
T Consensus 388 ~~~~~~i~~~~~~ 400 (420)
T PRK09528 388 LGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 7776655554433
No 215
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.99 E-value=0.018 Score=60.70 Aligned_cols=136 Identities=16% Similarity=0.220 Sum_probs=90.4
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
..|+...+.+...+..|+.+++++- +.+++.+..|.++..+|.+..+..+
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDl-----------fGRr~~~i~g~~l~vvG~Iv~atA~------------------- 129 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDL-----------FGRRYFFIIGSLLGVVGSIVCATAQ------------------- 129 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHH-----------hcchHHHHHHHHHHHhHHHHhhcCC-------------------
Confidence 4566666666666667777764433 3344778899999999988877542
Q ss_pred cchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC
Q 012670 343 PISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL 422 (458)
Q Consensus 343 ~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 422 (458)
+...++.+.++.|+|.+.... ....+.+..|.+.|+...++...........++.+...+.. ..+|
T Consensus 130 --~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~------~~~W----- 195 (599)
T PF06609_consen 130 --NMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA------HSGW----- 195 (599)
T ss_pred --cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc------CCCc-----
Confidence 666778899999999777664 45558899999999888777666555555556666554421 1234
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Q 012670 423 NKGHLDYFFWLLAGLSIFNMLLYVV 447 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~ 447 (458)
.+.|.+..++..++.+..++
T Consensus 196 -----Rw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 196 -----RWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred -----chHHHHHHHHHHHHHHHHHH
Confidence 55666666665555554333
No 216
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=96.98 E-value=0.0089 Score=59.89 Aligned_cols=61 Identities=8% Similarity=-0.167 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+.|.+.+...+.+++.....|...+.+.+. ++.|+...+......++|..+|+.+++.+.+
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 566666778888998888888877777765 3456777788888889999999999998753
No 217
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.0038 Score=62.40 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhH
Q 012670 301 ELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMR 380 (458)
Q Consensus 301 ~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~ 380 (458)
+.+.-.-|++++.+-++.++..-.+ .......++..-+.+-+++-.-+.+......+..|.+.|
T Consensus 377 Rk~iq~~GF~~~~i~~~~~~~~y~~----------------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR 440 (538)
T KOG0252|consen 377 RKYIQLMGFFIMTIFFFVIAGPYNQ----------------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVR 440 (538)
T ss_pred hHHHHHhhHHHHHHHHHHHcCCccc----------------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHh
Confidence 3355677888877776666553210 011122233344555566655566777777899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 012670 381 SLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 381 g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
|..-|++-...=+|.++|........+. ++ ....+....++++++.++++.+.-+++-
T Consensus 441 ~t~hGIsAA~GK~GAivg~~~F~~~t~~-------~y----p~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 441 STCHGISAASGKAGAIVGAFGFLYLTDH-------NY----PPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred hhhhhHHHHhccchHHHHHHHhhHhhhc-------cC----CccccchHHHHHHHHHHHHhHheeEEee
Confidence 9999999999999999888877755421 11 1113456778898988888887765544
No 218
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=96.87 E-value=0.016 Score=58.13 Aligned_cols=61 Identities=7% Similarity=-0.191 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+.+.+++..++++.+.....|...+++.+ +++.|+...|......++|..+++.+.+.+.+
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~ 153 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG 153 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888888887754 45778999999999999999999999887764
No 219
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=96.85 E-value=0.014 Score=61.09 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=86.1
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++.....+...+..++..+ +.+++ .+++.+.++.++..+|.++.....
T Consensus 92 s~~~s~~~lga~~g~l~~g~----l~d~~-------GRk~~l~~~~~~~~iG~ii~~~a~-------------------- 140 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGR----LGDRI-------GRKKTLLLAVVLFLIGAIIIALAP-------------------- 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHh-------hhHHHHHHHHHHHHHHHHHHHHhh--------------------
Confidence 45555555555666666666 44443 333677888888888888887753
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILT 403 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~ 403 (458)
++++++++.++.|+|.+........++.+.+|++.||.......+...+|-.++..++.
T Consensus 141 -~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 141 -SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred -hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999999999999999999999999999888844433
No 220
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.73 E-value=0.016 Score=57.87 Aligned_cols=125 Identities=12% Similarity=0.053 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh---h
Q 012670 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA---M 379 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~---~ 379 (458)
+-+.+|.++..+|.+++.+.... ...+...+...+.++..+.++|.++.-|...++..|+.+++ .
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~------------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~ 69 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP------------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR 69 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS------------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc------------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence 34678888888898886665311 00011234567888999999999999999999999999987 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012670 380 RSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 455 (458)
Q Consensus 380 ~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~~ 455 (458)
+......++...++|..++..+...+++. .++...|.+.++..+++.+.++.-.++++++
T Consensus 70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 70 RDSFFNWFYWGINIGSLFSPTLVPYIQQN----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHC----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhHHHHHHHHhhhhHhhcccchhhccc----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 66677788999999999999888877631 2356778888888888888887766666654
No 221
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.66 E-value=0.0032 Score=65.00 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=79.2
Q ss_pred CchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc-chhhh
Q 012670 28 PAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG-WGLGF 106 (458)
Q Consensus 28 ~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g-w~~~F 106 (458)
..+.+.+++.-++.|+..|+..+...++.+++.|+++ .+..|++|...-...+.+||++.|.+.+..| -|+.|
T Consensus 377 ~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~ 450 (477)
T PF11700_consen 377 LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGF 450 (477)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 3466778888889999999999999999999999987 7999999999999999999999999998876 88999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012670 107 GIPALFMGFAIASFFSG 123 (458)
Q Consensus 107 ~i~~i~~~l~~ii~~~~ 123 (458)
....+++++++++++..
T Consensus 451 ~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 451 LFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888788887776443
No 222
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.60 E-value=0.045 Score=55.05 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=52.7
Q ss_pred HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhH
Q 012670 349 QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLD 428 (458)
Q Consensus 349 li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
..+..++.+++.....|...+++.+..++ ++...|......++|..+|+.+++.+... +..
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-----------------~~~ 162 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILFSI-----------------DPQ 162 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhhcc-----------------Cch
Confidence 44556778888888888888877665443 34566777777889999999888866421 124
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012670 429 YFFWLLAGLSIFNMLLYV 446 (458)
Q Consensus 429 ~~f~~~a~i~~~~~v~~~ 446 (458)
..|.+.++++++..++.+
T Consensus 163 ~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 163 IVFWLGSGFALILMLLLM 180 (396)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567666666666654443
No 223
>PRK11462 putative transporter; Provisional
Probab=96.49 E-value=0.08 Score=54.60 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 346 IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP-DAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 346 ~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP-~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
..|+.+.+.+..++.-+...+-.++..+.++ ++.|...++.-.....+|..+++.+...+.
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv 170 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLV 170 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999999999888 888999999999999988888777765443
No 224
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.47 E-value=0.12 Score=53.22 Aligned_cols=103 Identities=17% Similarity=0.071 Sum_probs=75.6
Q ss_pred HHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHH
Q 012670 276 FWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFL 355 (458)
Q Consensus 276 ~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 355 (458)
+.+.+...+..++.+|+++| .-+.+..++..++.+.....-.. -+...++++.++
T Consensus 71 iG~~~Gs~~~~~la~~~GRK-------~~l~~~~~l~~~~~~~~~~s~~~------------------~~~e~li~GR~i 125 (485)
T KOG0569|consen 71 IGGMIGSFSSGLLADRFGRK-------NALLLSNLLAVLAALLMGLSKSA------------------PSFEMLILGRLI 125 (485)
T ss_pred HHHHHHHHHHHHHHHhhcch-------HHHHHHHHHHHHHHHHHHHHHHh------------------hhHHHHHHHHHH
Confidence 44455555555677775433 44555555555554444432211 266778889999
Q ss_pred HhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhh
Q 012670 356 LGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILT 403 (458)
Q Consensus 356 ~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~ 403 (458)
.|+..++......-++.+.+|++.||.+..+..+...+|..++..++.
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l 173 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL 173 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998866655
No 225
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.43 E-value=0.12 Score=51.27 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=78.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
.+.++-+..|+.++++|+.+..-.... .++..++.+.++.+.|.++...+.+.++....|++
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa~~------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~ 136 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAASS------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPE 136 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhh------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence 556678899999999998887643322 36667777899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 379 MRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
....=+++....+.+|..++|.+++.+..
T Consensus 137 ~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 137 SAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998754
No 226
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=96.41 E-value=0.054 Score=53.79 Aligned_cols=154 Identities=11% Similarity=0.045 Sum_probs=96.4
Q ss_pred cccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 012670 259 FTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQ 338 (458)
Q Consensus 259 ~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
+.++++....+.+..++... +.......+.+|+ .+++....++++..+-.+...+...+
T Consensus 44 ~~LS~~q~~ll~aiPil~Ga-llRl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~~------------- 102 (417)
T COG2223 44 FGLSEGQKGLLVAIPILVGA-LLRLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVTY------------- 102 (417)
T ss_pred cCCCHHHHHHHHHHHHHHhH-HHHHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHccC-------------
Confidence 45666666555555544333 2233333356664 44477788888888888888877532
Q ss_pred CCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCC
Q 012670 339 NVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWI 418 (458)
Q Consensus 339 ~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~ 418 (458)
.+.|.++..-++.|++- -.+..++..+.+-.||+.+|.++|++. ..|+|..+...+...+..... +
T Consensus 103 -----~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g------~- 168 (417)
T COG2223 103 -----PSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG------F- 168 (417)
T ss_pred -----CchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh------h-
Confidence 24445555555666554 345778889999999999999999999 888888877777776653221 0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012670 419 PDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYK 453 (458)
Q Consensus 419 ~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~ 453 (458)
+.....-.+.....++..+.+++..+...
T Consensus 169 ------~~w~~~~~i~~~~l~v~~v~~~~~~~d~p 197 (417)
T COG2223 169 ------LAWRNVAGIYVVALAIAAVLAWLGMNDVP 197 (417)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 01233334444555566666666655443
No 227
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.044 Score=53.47 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=83.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
+...+.+..++++.++|..+=... +.+.++....+.|.|.+..+...-+++-+.-| +
T Consensus 74 ~g~er~l~~~Llli~~G~~iR~~~----------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k 130 (395)
T COG2807 74 FGEERSLFLALLLIAAGILIRSLG----------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-K 130 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcc----------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-c
Confidence 677788888888888876664432 45667788999999999999999999999888 5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 012670 379 MRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~ 448 (458)
..+.++|+|.....++..+++.+...+.+.. .+| .....+-+..++++.++.+..
T Consensus 131 ~~~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW----------~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 131 RVGLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGW----------RGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred chhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccH----------HHHHHHHHHHHHHHHHHHhhh
Confidence 6789999999999999999999888775322 123 333444455666666655554
No 228
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.032 Score=58.12 Aligned_cols=134 Identities=12% Similarity=0.100 Sum_probs=101.0
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
.+|+.++...+..+.+|+... +.+|+ ..+..+++|.+++++|+++..+..
T Consensus 83 ~~~i~sl~~~~~~~~gpl~s~----l~~rf-------g~R~v~i~G~~v~~~g~~lssF~~------------------- 132 (509)
T KOG2504|consen 83 IAWIGSLLLGVYLLAGPLVSA----LCNRF-------GCRTVMIAGGLVAALGLLLSSFAT------------------- 132 (509)
T ss_pred HHHHHHHHHHHHHHhccHHHH----HHhhc-------CchHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 567777777777888888887 66664 444778999999999999998864
Q ss_pred cchhHHHHHH-HHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCC
Q 012670 343 PISIFWQIPQ-YFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDN 421 (458)
Q Consensus 343 ~~s~~~li~~-~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~ 421 (458)
+.|.+++. .++.|+|.+++..+....+. ...++.|++++|+...-.++|..+=+.+...+.+..
T Consensus 133 --~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~------------ 197 (509)
T KOG2504|consen 133 --SLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY------------ 197 (509)
T ss_pred --hHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh------------
Confidence 66666665 58999999999988888887 578899999999999999998887777777664322
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHH
Q 012670 422 LNKGHLDYFFWLLAGLSIFNMLLY 445 (458)
Q Consensus 422 ~~~~~~~~~f~~~a~i~~~~~v~~ 445 (458)
+..+.+++.+.+.+-..+..
T Consensus 198 ----G~r~~~l~~~~~~l~~~~~~ 217 (509)
T KOG2504|consen 198 ----GWRGALLIFGGISLNVLVAG 217 (509)
T ss_pred ----CcHHHHHHHHHHHHHHHHHH
Confidence 23455666666664333333
No 229
>PRK09669 putative symporter YagG; Provisional
Probab=96.35 E-value=0.033 Score=57.06 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhccc-chhhHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQS-PDAMRSLCSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~a-P~~~~g~~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
..+|..+.+.+.+.+..+...+-.++..+.. +++.|+..++.-.....+|+.+++.+...+
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl 169 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPL 169 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888889988877 557788888888888888888877665443
No 230
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.26 E-value=0.82 Score=45.90 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.|.+++..+..|+-.+.+-......+.+..|++.|...+|.....-++|-.+++.++-.+.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56666667788888888999999999999999999999999999999999999988877543
No 231
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.18 E-value=0.38 Score=47.96 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHH
Q 012670 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSL 382 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~ 382 (458)
.-+..|.++...+..+......... .+.+ +.+.+...........+.+.|+|......+.++++.|.+|++.|+.
T Consensus 51 PyI~~G~~~~~~g~~~ap~a~~~l~---~~~~--~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~ 125 (403)
T PF03209_consen 51 PYIWGGTLLQAGGLAIAPFALLLLA---ESGQ--QSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPR 125 (403)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc---cccc--ccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhh
Confidence 3456677777776666555432210 0000 0000111112234567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 383 CSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 383 ~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
..++.+.+.-+|.+++..+.+.+.
T Consensus 126 ~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 126 VVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999888654
No 232
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.14 E-value=0.23 Score=49.78 Aligned_cols=86 Identities=10% Similarity=-0.015 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012670 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
.|+.....+.++......+...++..+..+++.++.+.+.......+|..+|+...+.+.+.. +
T Consensus 98 ~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~----------------g 161 (390)
T TIGR02718 98 GWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF----------------G 161 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------C
Confidence 344445556667777777888888888888888888888888888888888887666554321 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 012670 427 LDYFFWLLAGLSIFNMLLYVVC 448 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~ 448 (458)
.+..|.+.+++.++..+..++.
T Consensus 162 w~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 162 QRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3567888887777666655444
No 233
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.05 E-value=0.023 Score=55.65 Aligned_cols=83 Identities=17% Similarity=0.001 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHH
Q 012670 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSL 382 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~ 382 (458)
..+.++.+..++++.+++.-. +...++.+-++.|+..+.++ ..-+++.|.++++.|+.
T Consensus 99 pvll~c~~~va~s~ll~~~S~---------------------~F~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~r~l 156 (451)
T KOG2615|consen 99 PVLLACLIGVALSYLLWALSR---------------------NFAAFVLARFLGGIFKGNLS-VIRAIISDVVSEKYRPL 156 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhhhhccCchH-HHHHHHHhhcChhhccc
Confidence 567788888888877777642 55556666888888887765 45789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 383 CSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 383 ~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
.++......++|.++||.+++.+..
T Consensus 157 ~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 157 GMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred eeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999999876
No 234
>PF13347 MFS_2: MFS/sugar transport protein
Probab=95.85 E-value=0.054 Score=55.20 Aligned_cols=125 Identities=17% Similarity=0.241 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc-hhhHHHH
Q 012670 305 MGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP-DAMRSLC 383 (458)
Q Consensus 305 ~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP-~~~~g~~ 383 (458)
+.+|.++.++++.++...... +.+......|+.+.+++..++..+...+..++..+..+ ++.|...
T Consensus 75 ~l~g~i~~~~~~~llf~~~p~-------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l 141 (428)
T PF13347_consen 75 ILIGAILLALSFFLLFSPPPA-------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRL 141 (428)
T ss_pred eehhhHHHHHHHHHhhccccc-------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhH
Confidence 567888888887777653100 00111245677888888899999999999999999998 4689999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012670 384 SALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 384 ~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
.+.-.....+|+.+...+...+... +++.-...++.....+.+++.++..++..+..|.
T Consensus 142 ~~~~~~~~~~g~~l~~~~~~~l~~~---------~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 142 SSWRMIFSMIGSLLASFLAPILVSW---------FGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh---------hccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 9999999999987666666655422 2111111145566666667766666666655555
No 235
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=95.73 E-value=0.15 Score=52.16 Aligned_cols=155 Identities=15% Similarity=0.075 Sum_probs=87.4
Q ss_pred cccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc-
Q 012670 266 LSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPI- 344 (458)
Q Consensus 266 l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 344 (458)
......+.-.++.|+++.+. .++ .+.++.+++|.+++.+|.+++...+.. +.
T Consensus 76 viaa~slg~~i~~liF~~Ws-------~k~---~~~k~Pli~s~ii~~~g~llY~~l~~~-----------------~~~ 128 (488)
T KOG2325|consen 76 VIAASSLGHAIFSLIFGIWS-------NKT---GSVKKPLIVSFLIAIIGNLLYLALAYV-----------------PNG 128 (488)
T ss_pred HHHHHHHHHHhcchhhcccc-------ccc---CCcccCHHHHHHHHHHHHHHHHHHHhc-----------------ccc
Confidence 33444555556666666531 111 233577899999999999999766542 12
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCC
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNK 424 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (458)
+.+++.+++++.|+|.+... ..=+++.+..-.+.|-++++.....+.+|..+|+.+...+...-+++- .|.++ ..-
T Consensus 129 ~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~--~i~~~-~~~ 204 (488)
T KOG2325|consen 129 VKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGF--MILPG-LIF 204 (488)
T ss_pred hHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCce--EEcCc-ceE
Confidence 66788899999999965443 233455554445555566666666666666666666655543221111 12221 111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhc
Q 012670 425 GHLDYFFWLLAGLSIFNMLLYVVCAKK 451 (458)
Q Consensus 425 ~~~~~~f~~~a~i~~~~~v~~~~~~~~ 451 (458)
+.++.-=++.+++.++..++..+..+-
T Consensus 205 n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 205 NMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred EecchHHHHHHHHHHHHHHHHHhheee
Confidence 223333345555666666655554443
No 236
>PRK10429 melibiose:sodium symporter; Provisional
Probab=95.60 E-value=0.3 Score=50.48 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhccc-chhhHHHHHHHHHHHHHHHHHHhhHHhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQS-PDAMRSLCSALSLLTTALGNYLSSFILT 403 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~a-P~~~~g~~~g~~~~~~~ig~~ig~~l~~ 403 (458)
...|+.+.+++..++..+..++..++..+.+ +++.|....+.-....++|+.+.+.+..
T Consensus 105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~ 164 (473)
T PRK10429 105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL 164 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888889999999999999999998 6889999888866666777666655444
No 237
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.60 E-value=0.061 Score=52.36 Aligned_cols=62 Identities=11% Similarity=0.061 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
++.++++++++.+.|..+..+..+.++.+..|++.+.+.+++....+++|..+||.+.+.+.
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999775
No 238
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=95.54 E-value=0.013 Score=59.41 Aligned_cols=117 Identities=12% Similarity=0.023 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhh--H
Q 012670 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAM--R 380 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~--~ 380 (458)
+-+.+|.+++++|.+.++..+ ..+...+.++..++++|.+++-|...+++.++.|++. |
T Consensus 93 ~tI~lGail~~iGh~~L~~~~-------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dprr 153 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISS-------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRR 153 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccc-------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCccc
Confidence 567899999999999887631 0245678889999999999999999999999998754 5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012670 381 SLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 381 g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
....++++...++|+.+++.+.+.+... .+++..|.+.++-..++.+.|++..|+++.
T Consensus 154 D~gFt~fY~~iNiGsl~~p~i~~~~~~~----------------~g~~~gF~~aavGm~~gl~~f~~~~r~~~~ 211 (498)
T COG3104 154 DGGFTLFYMGINIGSLIAPIITGLLAIN----------------YGWHVGFGLAAVGMIIGLVIFLLGRRHVKG 211 (498)
T ss_pred CCCccEEEEEeehHHHHHHHHHHHHHHh----------------hCHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence 5567788888999999999999987631 235677888888888888888877666653
No 239
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=95.44 E-value=0.32 Score=42.09 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+.+.++++-++.|+|..+.+...-.++.+...++.+++.++++......+..+|..+.-.+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999998888877666543
No 240
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=95.18 E-value=0.29 Score=51.26 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHH
Q 012670 302 LQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRS 381 (458)
Q Consensus 302 ~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g 381 (458)
+..+.++.++..++-+...+. .+++.+.+..++.|++..........++.+..+++.|+
T Consensus 148 k~~~~~~~~~~~i~~~~~a~a---------------------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~ 206 (521)
T KOG0255|consen 148 KPVLLVSLLLFIIFGILTAFA---------------------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRG 206 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------------------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhh
Confidence 356677777766666555554 37888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 012670 382 LCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLL 444 (458)
Q Consensus 382 ~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~ 444 (458)
.+..+ ......++.+++...+.+.. +| .+.+++.++.+.+..+.
T Consensus 207 ~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 207 LALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHHHHHHH
Confidence 99999 77777777777777776642 23 56667766666655555
No 241
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=95.00 E-value=0.035 Score=56.06 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=62.9
Q ss_pred HHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHH-HHHHHHHhHhhhhccccccchh------hhHH
Q 012670 36 FGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSI-NIGALISSSLIVWIQDNAGWGL------GFGI 108 (458)
Q Consensus 36 ~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~-niG~~igp~l~g~l~~~~gw~~------~F~i 108 (458)
.+.++-|+..|.+.+.....+.+..|+|. |.++.+++.... .+|..+|..++|++.|++|-+. .|.+
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v 379 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLV 379 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 34456899999999999999999999987 999999998865 5999999999999999887554 4444
Q ss_pred HHHHHHHHHHHHHh
Q 012670 109 PALFMGFAIASFFS 122 (458)
Q Consensus 109 ~~i~~~l~~ii~~~ 122 (458)
++...++..+++.+
T Consensus 380 ~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 380 FAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHHHHHHHh
Confidence 55444444444433
No 242
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=94.43 E-value=0.056 Score=50.97 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc---chhhhHHHH
Q 012670 34 FFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG---WGLGFGIPA 110 (458)
Q Consensus 34 ~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g---w~~~F~i~~ 110 (458)
-|.++.++|+...+..-..-.+++...|+|+ .+++++..+...|+|-.+-|+++|++.++-| |--+|.+..
T Consensus 355 Py~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 355 PYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 3788999999998877777888888889887 9999999999999999999999999988644 444566554
Q ss_pred HHHHH
Q 012670 111 LFMGF 115 (458)
Q Consensus 111 i~~~l 115 (458)
..+.+
T Consensus 429 ~~~aL 433 (459)
T KOG4686|consen 429 GLMAL 433 (459)
T ss_pred HHHHH
Confidence 44433
No 243
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=93.63 E-value=4.4 Score=41.27 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
.+...++.+.++-=+|.=..--...-++.+..|++.||...|+=+..+++...+...++-.+
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46666666777777888888889999999999999999999999999999998887776544
No 244
>PRK09848 glucuronide transporter; Provisional
Probab=93.45 E-value=0.079 Score=54.27 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChh-hhhhccchhhHHHHHHHHHHHHHhHhhhhccccccc
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSN-ERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGW 102 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~-~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw 102 (458)
+.+.+++..++.++|.+...+...++..|..|++|.+ .+++++..++.+.+...+|..+|+.+.|++.+..||
T Consensus 318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566677788999999999999999999998765421 112358888999999999999999999987665555
No 245
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=93.34 E-value=1.4 Score=41.43 Aligned_cols=91 Identities=14% Similarity=0.079 Sum_probs=66.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
..+...+.+|.++..+|+........++ ....+.|.+.+...+.+.|....+........+.-|+
T Consensus 63 ~gp~~~l~iG~~~~~~GY~~~~l~~~~~--------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~- 127 (250)
T PF06813_consen 63 FGPWVVLLIGAVLGFVGYGLLWLAVSGR--------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR- 127 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCc--------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-
Confidence 4555667888888888887776543211 1113566677777888888888888888888888985
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhh
Q 012670 379 MRSLCSALSLLTTALGNYLSSFILTV 404 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~ 404 (458)
.||.+.|+.-...++++.+=..+...
T Consensus 128 ~RG~vvgilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 128 SRGTVVGILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred ccCceehhhhHHHHhHHHHHHHHHHH
Confidence 79999999999999988765554443
No 246
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=93.20 E-value=1.9 Score=44.22 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=54.7
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP-DAMRSLCSALSLLTTALGNYLSSFILTVVTYFT 409 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP-~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~ 409 (458)
.+..+..+.|.+.+++.-+++.+-.++.....+ ++.|....+......++|+.+...+...+....
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~ 176 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLF 176 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788889999999999999988888877664 577888999999999999888888877666443
No 247
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=93.14 E-value=6.9 Score=40.37 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=35.8
Q ss_pred cchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcc
Q 012670 51 CVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQ 97 (458)
Q Consensus 51 ~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~ 97 (458)
.--++..|.+..+| -.|.+++++.+.|+|..+|+.+..++.
T Consensus 149 lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889998877 788999999999999999999998876
No 248
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=93.02 E-value=1.1 Score=45.83 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhccc---chhh
Q 012670 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQS---PDAM 379 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~a---P~~~ 379 (458)
.-+.+|.++.+++.+.+...... ..+........++..+|..+.....-+.+.+.+ |++
T Consensus 60 ~Y~~i~~~~~~~~~~~~~~~~~~-----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~- 121 (433)
T PF03092_consen 60 PYMIIGWLLGAVSALVLALLPAS-----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES- 121 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-
Confidence 33566666665555555544211 123444555667778887777766666555544 555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 380 RSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 380 ~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+|..++..+..+.+|+.++..+++...+
T Consensus 122 ~g~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 122 RGDLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 8899999999999999999999887653
No 249
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=92.98 E-value=0.14 Score=51.68 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=100.3
Q ss_pred cCcCccccchhhh---HHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 012670 261 IPPASLSSFDVIS---VIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVD 337 (458)
Q Consensus 261 ~~~~~l~~ln~~~---vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
.|+...+.+|... .++.+-++++ +.+++++ +..+..-++++.++-+..+...
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~----lgD~~GR-------K~vYG~~liImIi~t~~~~~s~-------------- 135 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGW----LGDKFGR-------KKVYGKELIIMIICSALSGLSV-------------- 135 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH----HHhhhcc-------hhhhhHHHHHHHHHHHHhccCC--------------
Confidence 5666666666543 3456666666 4444332 2455556666655554322211
Q ss_pred CCCCcc-chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcC
Q 012670 338 QNVSVP-ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTG 416 (458)
Q Consensus 338 ~~~~~~-~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~ 416 (458)
..+.+ --++|+..--+++|+|.+.=-|.+-+...+.+-++.||...+..+.++++|-..|..+...+....+..
T Consensus 136 -~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~---- 210 (538)
T KOG0252|consen 136 -GTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKI---- 210 (538)
T ss_pred -CCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhcc----
Confidence 11222 235777888899999999999999999999999999999999999999999888887777665544311
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 012670 417 WIPDNLNKGHLDYFFWLLAGLSIFNMLLY 445 (458)
Q Consensus 417 ~~~~~~~~~~~~~~f~~~a~i~~~~~v~~ 445 (458)
+++.-....++..|-+.-.++++..+.-
T Consensus 211 -~~~~~~~~~ld~vWRl~~glg~vpa~~~ 238 (538)
T KOG0252|consen 211 -FNGPSTYPHLDGVWRIIFGLGAVPALLV 238 (538)
T ss_pred -CCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 1111122457788877776666655543
No 250
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=92.37 E-value=14 Score=37.39 Aligned_cols=51 Identities=6% Similarity=0.007 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGN 395 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~ 395 (458)
++|....++++......+..+....-+.+...++.-|...|++.+..-+=.
T Consensus 339 ~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 339 NIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQ 389 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence 788889999999999999999988888888888888888888766554433
No 251
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=92.16 E-value=0.32 Score=50.32 Aligned_cols=70 Identities=11% Similarity=-0.031 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccccc-----chhhhH
Q 012670 33 VFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAG-----WGLGFG 107 (458)
Q Consensus 33 ~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~g-----w~~~F~ 107 (458)
......++.+++.+........++.+..|+++ +++.++++....|+|..+++.++|++.++.| ++..+.
T Consensus 353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~ 426 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWL 426 (468)
T ss_pred eeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHH
Confidence 44455677888888888888999999999887 8999999999999999999999999999888 665444
Q ss_pred H
Q 012670 108 I 108 (458)
Q Consensus 108 i 108 (458)
.
T Consensus 427 ~ 427 (468)
T TIGR00788 427 L 427 (468)
T ss_pred H
Confidence 3
No 252
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=91.94 E-value=0.92 Score=45.85 Aligned_cols=167 Identities=14% Similarity=0.055 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcCCCcCcccCcCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCC
Q 012670 219 KILIRMFPIWATGIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERG 298 (458)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~ 298 (458)
+.+++...+.+..-+.|....+..+-+.... ..+.. . .+.++...|+..++.+|+.+..+++.-.|+++|
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk-----~-~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR--- 101 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSL-GVPHK-----W-SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR--- 101 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHc-CCCcc-----c-ccccccccccccceecccccccccccccccccc---
Confidence 3344444444455555665554444443321 11211 1 234566778888899999998888777776543
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC-C-CccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccc
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQN-V-SVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSP 376 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP 376 (458)
+.-+.++.++.++++++.+........ +.|++ . ..+......++.+.+.-+..-....+.=++..|..-
T Consensus 102 ---RPfI~~~s~~i~~~l~Lig~aaDig~~------lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~ 172 (498)
T KOG0637|consen 102 ---RPFILAGSLLIAVSLFLIGYAADIGLL------LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLAR 172 (498)
T ss_pred ---cchHHHhhHHHHHHHhhhhhHhhhhHH------hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhcc
Confidence 234677888888888877765422111 11221 1 223455556677788888888888888888888887
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHhhHHhhh
Q 012670 377 DAMRSL-CSALSLLTTALGNYLSSFILTV 404 (458)
Q Consensus 377 ~~~~g~-~~g~~~~~~~ig~~ig~~l~~~ 404 (458)
+..+.. +.+.+.++.++||.+|..++..
T Consensus 173 ~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 173 GDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred ChhhhhccchhHHHHHHhcceeeeecccc
Confidence 777777 9999999999999999988763
No 253
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=91.77 E-value=1.2 Score=44.89 Aligned_cols=49 Identities=10% Similarity=0.136 Sum_probs=28.7
Q ss_pred HHHHhhcchhHHHHHHhhcCCCcCcccCcCccccchhhhHHHHHhhhhhhhhhhh
Q 012670 235 SAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIA 289 (458)
Q Consensus 235 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ln~~~vi~~~pl~~~~~~~l~ 289 (458)
|..+....+.+..+..+.+ .-..+.+...+.+..++.+|+.+.+.+++.
T Consensus 23 ~gi~~pF~~iWL~~~~GLs------~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg 71 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLS------GTEIGIIFSAGSLFALLAQPVYGFISDKLG 71 (412)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHccccCCC------HHHHHHHHHHHHHHHHHHHHhHHHhcchhh
Confidence 4444444444554433333 224566777888889999999888555543
No 254
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=91.47 E-value=0.14 Score=52.49 Aligned_cols=94 Identities=13% Similarity=0.013 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHH-HHHHHHHhHhhhhccccccchhhhHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSI-NIGALISSSLIVWIQDNAGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~-niG~~igp~l~g~l~~~~gw~~~F~i 108 (458)
++|+....-++.|+..+.+..++.+.+.+..||+- |.++-++....- .+|--+|.++||.+.+++|=|..|.+
T Consensus 458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~ 531 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI 531 (618)
T ss_pred CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence 66676777799999999999999999999999987 788887765443 47888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceee
Q 012670 109 PALFMGFAIASFFSGTSLYRF 129 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~~~~~~~ 129 (458)
.++.+++.++.+....+..++
T Consensus 532 ~giAcl~~l~~~~~iq~~l~~ 552 (618)
T KOG3762|consen 532 FGIACLVTLALFISIQLLLKR 552 (618)
T ss_pred HHHHHHHHHHHHHHhhhhhcc
Confidence 999888888877766665544
No 255
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=91.34 E-value=1.6 Score=44.19 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=75.2
Q ss_pred cCccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 012670 263 PASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSV 342 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
..|+..++-++-+.++-...| +.+| +..+.-..+|..+.++|..+=.+-.. +..
T Consensus 81 ~~wlsmIym~v~vp~gf~~mw----~ldk-------~GLR~a~llgt~ln~iGa~Ir~iss~---------------p~v 134 (480)
T KOG2563|consen 81 ADWLSMIYMVVSVPFGFAAMW----ILDK-------FGLRTALLLGTVLNGIGAWIRLISSL---------------PFV 134 (480)
T ss_pred HHHHHHHHHHHHHHHhhHHHH----hhcc-------cchHHHHHHHHHHHHHHHHHhhhccC---------------ccc
Confidence 445555444444444444444 5555 34445667888888888666544211 011
Q ss_pred cchhH--HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 343 PISIF--WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 343 ~~s~~--~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+.+.+ ....++.+.+.++.++.-.-.-....--|++.|..+..+-.+.+.+|-++|..+-..+..
T Consensus 135 ~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 135 PPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred cccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 12333 345678888888877775545556666899999999998888888888888777776653
No 256
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=91.16 E-value=0.32 Score=45.40 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=65.4
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCC-CChhhhhhccchhhHHHH-HHHHHHHHHhHhhhhcccc--ccchh
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDD-TDSNERVKKGSFFNWFYF-SINIGALISSSLIVWIQDN--AGWGL 104 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~-~~~~~~~~R~~~~~~~~~-~~niG~~igp~l~g~l~~~--~gw~~ 104 (458)
.....+++.+.+.|++.+...|...+.+.|.+++ ++ |+...+.... ...+|..++|.+++++... .+||+
T Consensus 92 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (338)
T COG0477 92 VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA 165 (338)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4677778888889999999999999999999987 33 8889999888 6889999999888877654 68999
Q ss_pred hhHHHHHHHH
Q 012670 105 GFGIPALFMG 114 (458)
Q Consensus 105 ~F~i~~i~~~ 114 (458)
.|.+......
T Consensus 166 ~~~~~~~~~~ 175 (338)
T COG0477 166 AFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHH
Confidence 7777665443
No 257
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=90.81 E-value=17 Score=36.76 Aligned_cols=82 Identities=11% Similarity=0.144 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHH
Q 012670 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSL 382 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~ 382 (458)
..++++.+...+...++.++ .+.+++-+..++.|++... -..-+++++..+|++.--+
T Consensus 72 pviil~~~~~i~t~~lll~~---------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~ 129 (412)
T PF01770_consen 72 PVIILQALSYIITWLLLLFG---------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQK 129 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHH
Confidence 44555655555555555554 2677777777777766644 4777899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 383 CSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 383 ~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+++..-.+.-+|..+|+.+++++.
T Consensus 130 vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 130 VTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888775
No 258
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=89.04 E-value=13 Score=38.33 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCch
Q 012670 347 FWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGH 426 (458)
Q Consensus 347 ~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
||.++ ..-..-+........++++.|....+.|....|+.+.....+..+++.+++...+. .+
T Consensus 114 ~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~----------------~~ 176 (463)
T KOG2816|consen 114 YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF----------------LG 176 (463)
T ss_pred HHHhh-hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------------cC
Confidence 44444 33334455666788999999999999999999999999999999999999876532 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 427 LDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 427 ~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
+...|.+.+++.++..+...+..+
T Consensus 177 ~a~~f~ia~~~~~~~~~y~~~~l~ 200 (463)
T KOG2816|consen 177 IALVFLIAAASGILSLLYMLLFLP 200 (463)
T ss_pred chHHHHHHHHHHHHHHHHHhhccc
Confidence 455666666666655555444433
No 259
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=88.64 E-value=29 Score=35.88 Aligned_cols=58 Identities=12% Similarity=-0.030 Sum_probs=45.8
Q ss_pred HHHHHHhH-HHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhh
Q 012670 351 PQYFLLGA-AEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYF 408 (458)
Q Consensus 351 ~~~~l~g~-ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~ 408 (458)
..|+...+ |...++-..++++.+....++..+..++.....++|..+|+.+...+.+.
T Consensus 133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~ 191 (472)
T TIGR00769 133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL 191 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33433333 33344448899999999999999999999999999999999998887643
No 260
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=88.41 E-value=3.5 Score=40.57 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=65.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHH-HHHHHHhHhhhhccccc
Q 012670 22 LCPSATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSIN-IGALISSSLIVWIQDNA 100 (458)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~n-iG~~igp~l~g~l~~~~ 100 (458)
+|-+..+.+...+++++++-|+++.+..+.-++.......+++-+ ++..+.-|+......| +-+.++.+++=++.+..
T Consensus 112 scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~ 190 (354)
T PF05631_consen 112 SCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP-QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF 190 (354)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence 455666778999999999999999999998888776555333211 0113333333332222 33445555555666666
Q ss_pred cc--hhhhHHHHHHHHHHHHHHHhcC
Q 012670 101 GW--GLGFGIPALFMGFAIASFFSGT 124 (458)
Q Consensus 101 gw--~~~F~i~~i~~~l~~ii~~~~~ 124 (458)
+. ...|..+.+...++.++....+
T Consensus 191 ~~g~vaPF~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 191 GFGPVAPFDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcc
Confidence 55 7899999888877777654444
No 261
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=87.88 E-value=0.02 Score=58.57 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHH
Q 012670 303 QRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSL 382 (458)
Q Consensus 303 ~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~ 382 (458)
+-+.++.++..++.++..+...+ .+++.+.+..++.|+|.+...+....++.+.+|++.||.
T Consensus 77 ~~~~~~~~~~~i~~~~~~~~~~~------------------~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~ 138 (451)
T PF00083_consen 77 PALIISALLMIIGSILIAFAPSY------------------NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGF 138 (451)
T ss_pred ccccccccccccccccccccccc------------------ccccccccccccccccccccccccccccccccccccccc
Confidence 45566777777776666654210 267778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhh
Q 012670 383 CSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 383 ~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
+..+......+|..++..+...+
T Consensus 139 ~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 139 LSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999988887766544
No 262
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=87.52 E-value=0.65 Score=46.46 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccc-cchhhhHHHH
Q 012670 32 AVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNA-GWGLGFGIPA 110 (458)
Q Consensus 32 ~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~-gw~~~F~i~~ 110 (458)
..+.+.-+++|+..|+..+.+-+..++..|+++ -+++|++|...-..++.+||.+.+.+.+.. +-|..+..-.
T Consensus 342 ~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~ 415 (438)
T COG2270 342 LDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSII 415 (438)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 334455578999999999999999999999987 689999999999999999999999887643 3566676666
Q ss_pred HHHHHHHHHHHh
Q 012670 111 LFMGFAIASFFS 122 (458)
Q Consensus 111 i~~~l~~ii~~~ 122 (458)
+++.+++++++.
T Consensus 416 vll~iGl~~L~~ 427 (438)
T COG2270 416 VLLLIGLLLLLR 427 (438)
T ss_pred HHHHhhHhhEEe
Confidence 666666665443
No 263
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=84.60 E-value=36 Score=32.05 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=41.9
Q ss_pred hccchhhHHHHHHHHHHHHHhHhhhhc---cc--cccchhhhHHHHHHHHHHHHHHHhcCcceee
Q 012670 70 KKGSFFNWFYFSINIGALISSSLIVWI---QD--NAGWGLGFGIPALFMGFAIASFFSGTSLYRF 129 (458)
Q Consensus 70 ~R~~~~~~~~~~~niG~~igp~l~g~l---~~--~~gw~~~F~i~~i~~~l~~ii~~~~~~~~~~ 129 (458)
+|+....+..|+-|+|+.+.-+.--+- .+ .-.|++++.+.+++.++-++++.+..+++..
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~ 67 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDI 67 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 478888888899999998775432111 11 2359999999988777777777666666543
No 264
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=82.31 E-value=65 Score=33.50 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=34.5
Q ss_pred hhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc
Q 012670 53 SSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD 98 (458)
Q Consensus 53 ~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~ 98 (458)
-.+..|.+..+| -.|.++++..+.|+|..++..+..++.+
T Consensus 166 W~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678887776 7889999999999999999999888877
No 265
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=76.29 E-value=90 Score=31.42 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=46.5
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 350 IPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 350 i~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+..|.+.+.-.-..+...+++-.+.+||...|++|.+.+...++|+-.=..+...+.+
T Consensus 373 i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 373 ITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 3356666666667778899999999999999999999999999998766666655544
No 266
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=74.55 E-value=18 Score=36.46 Aligned_cols=111 Identities=14% Similarity=0.003 Sum_probs=72.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
.+...|+.+..++..+|+++..+.+ +.+.-+++.++.+++.++.-.+.+++.. ..|+
T Consensus 86 v~y~~Ri~~~~~l~~~g~l~va~~~---------------------~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~- 142 (402)
T PF02487_consen 86 VPYWIRILICVALSAAGMLLVAFSP---------------------SVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK- 142 (402)
T ss_pred ccchHHHHHHHHHHHHHHhheeecc---------------------chhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc-
Confidence 5667888888899999988877642 4555566777777776666677777755 3443
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012670 379 MRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAK 450 (458)
Q Consensus 379 ~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~ 450 (458)
...+.|...++.++.+|+..-..+.. . ++ +....+.....+.++..+.|+++.+
T Consensus 143 ---~~l~~wssGTG~aGl~Ga~~y~~lT~-~------g~--------s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 143 ---SSLSAWSSGTGGAGLVGALYYLGLTT-L------GL--------SPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred ---cccccccCCcChhhHHHHHHHHHHHH-h------Cc--------CHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677888888888888776654432 1 11 1344556666666666666655543
No 267
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=72.84 E-value=76 Score=31.92 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=38.9
Q ss_pred HHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 012670 352 QYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 352 ~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
.+++.-+..+.--...-.++.+...++.-|.++.......+.|..+|..+.-.+
T Consensus 139 ~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL 192 (510)
T KOG3574|consen 139 LFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLAL 192 (510)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEe
Confidence 445555555566677777777888889888888888888888877776655444
No 268
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.68 E-value=34 Score=35.16 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+-+......++.|+|.++.+...-.+..+..+++.+++.+++.......+..+|+.+.-.+..
T Consensus 101 N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 101 NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 567788899999999999999999999999999999999999999999999999877666543
No 269
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=72.44 E-value=92 Score=29.76 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=36.8
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 012670 348 WQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTAL 393 (458)
Q Consensus 348 ~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~i 393 (458)
.-.+++++.-.+-++.+|..+-.-.+..|+..|...+..+-.-.++
T Consensus 346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLni 391 (454)
T KOG4332|consen 346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNI 391 (454)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhH
Confidence 3367888888999999999999999999999998877655444333
No 270
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=70.77 E-value=64 Score=29.46 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccch-hhHHHHHHHHHH-HHHHHHHHhhHHhhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPD-AMRSLCSALSLL-TTALGNYLSSFILTVVT 406 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~-~~~g~~~g~~~~-~~~ig~~ig~~l~~~~~ 406 (458)
+.+.++......+++.+...+...+++.+..|+ ..++...+.... ...+|..+++.+.+.+.
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677779999999999999999999998 678888888888 57778888876666554
No 271
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=69.54 E-value=59 Score=33.26 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHH
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFI 401 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l 401 (458)
..+......++.|++.++.......++.. .|++ +++.+...+++++.++..+
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHH
Confidence 34444556678899999999999988875 5544 3444455555666555544
No 272
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=67.23 E-value=6.3 Score=34.06 Aligned_cols=58 Identities=7% Similarity=0.119 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhh
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLI 93 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~ 93 (458)
+.+.++.+-++.|+|.+...+..-..+++.-.+++ |++-.+++....+.+.++|.+..
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999998776654 78888888888888877776554
No 273
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=64.57 E-value=8.1 Score=36.59 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=66.2
Q ss_pred CCCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchh
Q 012670 25 SATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGL 104 (458)
Q Consensus 25 ~~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~ 104 (458)
+|++.++..-+++..++-.+-|.+.|.++-+=.+..|+++ |+..+.++..-.|+=.-++-..---=....+-|-
T Consensus 338 sP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~ 411 (454)
T KOG4332|consen 338 SPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRN 411 (454)
T ss_pred CCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccch
Confidence 4455677777899999999999999999999998888877 9999999999998766554321000011134567
Q ss_pred hhHHHHHHHHHHHHH
Q 012670 105 GFGIPALFMGFAIAS 119 (458)
Q Consensus 105 ~F~i~~i~~~l~~ii 119 (458)
.|.+|...+.++.+.
T Consensus 412 mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 412 MFGICSAFLFVASIL 426 (454)
T ss_pred hhhhhHHHHHHHHHH
Confidence 899999888877554
No 274
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=62.02 E-value=1.6e+02 Score=28.73 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=25.9
Q ss_pred HHHHHHHH-hHHHHHhhhhhhhhhhcccchhh
Q 012670 349 QIPQYFLL-GAAEVCTFIGQLEFFYDQSPDAM 379 (458)
Q Consensus 349 li~~~~l~-g~ge~l~~~~~~~~~~~~aP~~~ 379 (458)
+.+..... ++.|+.+......++.+.-|+-.
T Consensus 189 m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 189 MLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 55566665 99999999999999999888764
No 275
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=60.58 E-value=94 Score=29.14 Aligned_cols=85 Identities=9% Similarity=0.035 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
..+.+.+...+.+.|.+.+.........+.||+ + |+.+.++.-....+++.+-..+.-.+.++-.-+..+..+
T Consensus 95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la 167 (250)
T PF06813_consen 95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLA 167 (250)
T ss_pred chHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 455666666666677666666666666678875 3 899999999998888776665554444432224444444
Q ss_pred HHHHHHHHHHHH
Q 012670 110 ALFMGFAIASFF 121 (458)
Q Consensus 110 ~i~~~l~~ii~~ 121 (458)
.....++++..+
T Consensus 168 ~~~~~v~l~~~~ 179 (250)
T PF06813_consen 168 VLPAVVCLVAMF 179 (250)
T ss_pred HHHHHHHHHHhh
Confidence 333344444333
No 276
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=58.95 E-value=2e+02 Score=28.71 Aligned_cols=100 Identities=9% Similarity=0.034 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCC--
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNL-- 422 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~-- 422 (458)
++|+...+|++......+..+....-+.+...++.-|...|++.+..-+-..+ +.-.+.+. .++.-+.
T Consensus 325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsi---lT~iVvd~-------~g~~L~ir~ 394 (433)
T KOG3810|consen 325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSI---LTLIVVDD-------RGLGLDIRT 394 (433)
T ss_pred ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHh---heEEEEcc-------cccCCCcce
Confidence 78899999999999999999999999999899999999999877655433332 22222211 1111000
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012670 423 NKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 423 ~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
...-+..+|.+++++.+++..+.....++.++
T Consensus 395 Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~~~~ 426 (433)
T KOG3810|consen 395 QFVVYSSYFIVLGVIFLIGFGIEYLMCRRNKV 426 (433)
T ss_pred eEEEEeehHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 00123455888888888876665554444443
No 277
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=56.59 E-value=20 Score=37.29 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=52.7
Q ss_pred HHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHH
Q 012670 40 LIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIP 109 (458)
Q Consensus 40 l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~ 109 (458)
.-++..-+++..-...+.+++|+++ ++...+|-+...+++-+.+-..+++.+.++.||+..-.+.
T Consensus 291 ~Ygi~inLvE~~wK~~lk~~~~~~~-----~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Alit 355 (491)
T PF03219_consen 291 AYGISINLVEVVWKSQLKQLYPDPN-----DYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALIT 355 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3556666677777788888898765 3899999999999988888889999999999999877664
No 278
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=56.27 E-value=2.5e+02 Score=29.14 Aligned_cols=40 Identities=20% Similarity=0.450 Sum_probs=32.9
Q ss_pred hhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc
Q 012670 54 SFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN 99 (458)
Q Consensus 54 a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~ 99 (458)
.+..|++..+| -.|.+++++...|++..++..+..|+.++
T Consensus 171 ~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 171 QFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456666665 68899999999999999999999998774
No 279
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=54.07 E-value=21 Score=37.93 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=57.5
Q ss_pred CCCchhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhc
Q 012670 26 ATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWI 96 (458)
Q Consensus 26 ~~~~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l 96 (458)
....+..+...-.+++|+|+........-+--++.|++- |+-+.+++...+.+|.+++.++...+
T Consensus 453 ~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sM------kS~~~al~l~t~a~G~~lss~Lv~~v 517 (571)
T KOG1237|consen 453 TNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESM------KSVATALWLLTVAVGNYLSSVLVSLV 517 (571)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888899999999999999999999999999876 99999999999999999999888543
No 280
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=50.46 E-value=1.4e+02 Score=26.93 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccch
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPD 377 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~ 377 (458)
.+..+.+.+...++.|++++....++..+.-|+
T Consensus 172 ~~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 172 LVQAYLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444566788888999999999999998877664
No 281
>PRK03612 spermidine synthase; Provisional
Probab=48.15 E-value=2.5e+02 Score=29.47 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=36.1
Q ss_pred HHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 353 YFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 353 ~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
.++.++-.++..|....+..+... +.-|...|-.+..+.+|+.+|..+.+.+.
T Consensus 117 ~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 117 VLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 345566666666776666654322 22456678888889999999998888775
No 282
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=48.09 E-value=62 Score=25.61 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHhHhhhhccccccchh
Q 012670 75 FNWFYFSINIGALISSSLIVWIQDNAGWGL 104 (458)
Q Consensus 75 ~~~~~~~~niG~~igp~l~g~l~~~~gw~~ 104 (458)
++...+.+-+..++|..+|-||-++++-..
T Consensus 45 ~g~IG~~~v~pil~G~~lG~WLD~~~~t~~ 74 (100)
T TIGR02230 45 FGLIGWSVAIPTLLGVAVGIWLDRHYPSPF 74 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 566677777778888888889988876433
No 283
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=46.43 E-value=3.4e+02 Score=27.75 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
+.++.++..++.|+..+......+.+.-+.++++.|..+..+..++..+|-..|+.+.-.+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777899999999999999999999999999999999999999999998888775544
No 284
>PRK03612 spermidine synthase; Provisional
Probab=44.46 E-value=48 Score=34.79 Aligned_cols=78 Identities=17% Similarity=0.077 Sum_probs=50.7
Q ss_pred HHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccc-cccchhhhHHHH-HH
Q 012670 35 FFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQD-NAGWGLGFGIPA-LF 112 (458)
Q Consensus 35 ~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~-~~gw~~~F~i~~-i~ 112 (458)
+...++.++-.|+..|....+..+...+ + -++..+..|....+|+.+|.++.|++.- .+|-.-..++.+ +-
T Consensus 114 ~~~~~~~~~l~G~~~Pl~~~~~~~~~~~-~------~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~ 186 (521)
T PRK03612 114 YVLVLLIGLLIGMEIPLLMRILQRIRDQ-H------LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLN 186 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-c------hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3344556777777788877777654321 1 3567889999999999999999998654 567544444444 33
Q ss_pred HHHHHHH
Q 012670 113 MGFAIAS 119 (458)
Q Consensus 113 ~~l~~ii 119 (458)
.+++++.
T Consensus 187 ~~~a~~~ 193 (521)
T PRK03612 187 LLAALVF 193 (521)
T ss_pred HHHHHHH
Confidence 3344333
No 285
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=41.52 E-value=3e+02 Score=28.11 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=19.8
Q ss_pred cCcCccccchhhhHHHHHhhhhhhhhh
Q 012670 261 IPPASLSSFDVISVIFWVPIYDKIIVP 287 (458)
Q Consensus 261 ~~~~~l~~ln~~~vi~~~pl~~~~~~~ 287 (458)
++++..+....+..++++|..++++++
T Consensus 38 l~~siygl~~~~~~~~f~~~vG~~iD~ 64 (432)
T PF06963_consen 38 LPVSIYGLVRSLSAILFGPWVGRWIDR 64 (432)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 345556777788889999999885544
No 286
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=40.20 E-value=2.4e+02 Score=25.77 Aligned_cols=100 Identities=11% Similarity=0.014 Sum_probs=53.2
Q ss_pred cchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccch--
Q 012670 268 SFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPIS-- 345 (458)
Q Consensus 268 ~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-- 345 (458)
-.|.+.+.+..++..+..++..+|+. . +.....+..|.+-..++....... ... .+ + .+......+
T Consensus 109 G~N~l~m~~~~~~~~~~~~~~~~~~~-l---~~~v~~f~~gf~~~~l~~~~~~~~-l~l-~~----~--~~~~~~~~~~~ 176 (214)
T TIGR00123 109 GANGFSMGVIGPFVGWIVYKLACRAG-L---RRDVAVFLAAMLGDLATYVVTSVQ-LAL-AF----P--IPHAGFTGSVV 176 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-c---chHHHHHHHHHHHHHHHHHHHHHH-HHH-hC----C--CcccchHHHHH
Confidence 35777777788888887777776631 1 111223344444333333332221 000 00 0 000000011
Q ss_pred --hHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhh
Q 012670 346 --IFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAM 379 (458)
Q Consensus 346 --~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~ 379 (458)
.....+.+...++.|+.+......++.+.-|+-.
T Consensus 177 ~~~~~~~~~h~~~~i~Eg~iT~~~~~~l~~~~p~~l 212 (214)
T TIGR00123 177 KFMGIFAYTQVPLAIAEGLLTVMIYDYITKLRPDTL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhh
Confidence 2233355667899999999999999999888653
No 287
>PRK08319 cobalt transport protein CbiM; Validated
Probab=39.82 E-value=1.9e+02 Score=26.55 Aligned_cols=31 Identities=16% Similarity=0.122 Sum_probs=25.4
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhcccchhhH
Q 012670 350 IPQYFLLGAAEVCTFIGQLEFFYDQSPDAMR 380 (458)
Q Consensus 350 i~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~ 380 (458)
...+...+++|++++....++..+.-|+-.+
T Consensus 183 ~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l~ 213 (224)
T PRK08319 183 AVTQIPLAIAEGLLTVLIFNYLTKYRPDLLV 213 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHh
Confidence 3455679999999999999999988887553
No 288
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=36.93 E-value=3e+02 Score=25.43 Aligned_cols=35 Identities=9% Similarity=-0.013 Sum_probs=27.7
Q ss_pred hHHHHHHHHHH-hHHHHHhhhhhhhhhhcccchhhH
Q 012670 346 IFWQIPQYFLL-GAAEVCTFIGQLEFFYDQSPDAMR 380 (458)
Q Consensus 346 ~~~li~~~~l~-g~ge~l~~~~~~~~~~~~aP~~~~ 380 (458)
...+....... +++|+.+.....+++.+.-|+..-
T Consensus 183 ~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~l 218 (230)
T PRK11909 183 IPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENLL 218 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHh
Confidence 44566677776 999999999999999988666544
No 289
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=36.52 E-value=4.4e+02 Score=26.15 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhh-----cccchhhHHHHHHHHH-HHHHHHHHHhhHHhhhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFY-----DQSPDAMRSLCSALSL-LTTALGNYLSSFILTVV 405 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~-----~~aP~~~~g~~~g~~~-~~~~ig~~ig~~l~~~~ 405 (458)
+.+.+.++-++.|++..+.+...-++.. +-.|++..+...+... +.+++-.+.++.+.+..
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l 186 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL 186 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 5677888999999999999987777664 3345544444333333 23334444444444443
No 290
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=36.06 E-value=63 Score=24.09 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHHHHHHHHHHHH
Q 012670 74 FFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFF 121 (458)
Q Consensus 74 ~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~~l~~ii~~ 121 (458)
+-.++...+-+++++|.+. ||+.+ +.+..+++.+...++++++.+
T Consensus 9 ae~l~~~il~~~~iisfi~-Gy~~q--~~~~~~~~~~~g~~~~~lv~v 53 (76)
T PF06645_consen 9 AEKLMQYILIISAIISFIV-GYITQ--SFSYTFYIYGAGVVLTLLVVV 53 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHhhee
Confidence 4457777788888888765 67766 556777777766666666543
No 291
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=30.61 E-value=83 Score=32.72 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=52.4
Q ss_pred cchhHH-HHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 012670 343 PISIFW-QIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTY 407 (458)
Q Consensus 343 ~~s~~~-li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~ 407 (458)
+..++. .+..+++..+..-..+....++-.+.++|..-|++|.+.|...|+|+..-..++-.+.+
T Consensus 401 ~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 401 PTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 334433 33468888888889999999999999999999999999999999998877666555544
No 292
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=29.11 E-value=53 Score=33.65 Aligned_cols=63 Identities=16% Similarity=0.308 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhc
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWI 96 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l 96 (458)
.....+.++.-++=++.-..+....++++|...++++ +.++.+++...+.+|..+|..+++|.
T Consensus 140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-----~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-----KTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-----hhccchhHHHHHHhcceeeeeccccc
Confidence 4677788888888889988899999999999977652 23399999999999999999999855
No 293
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=28.99 E-value=6.2e+02 Score=26.57 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=32.4
Q ss_pred hhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 012670 365 IGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVT 406 (458)
Q Consensus 365 ~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~ 406 (458)
+..--++.+...++.+|.++.......++|..++..+.-.+.
T Consensus 137 IAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 137 IAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred ceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 455556666678899999999988888888888877766654
No 294
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=28.69 E-value=1.1e+02 Score=23.30 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=45.1
Q ss_pred HHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHHHHHHHH
Q 012670 41 IALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAI 117 (458)
Q Consensus 41 ~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~~l~~ 117 (458)
+|+|.=.+.|....|+.|.--... .-++...++.+|-++|-++..++.++...+..+.++.+...+..
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~---------~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~ 71 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLS---------QAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLST 71 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 455555667777777777655432 45677788888888898888888776565555665554444333
No 295
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=28.10 E-value=2.8e+02 Score=28.02 Aligned_cols=59 Identities=19% Similarity=0.053 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhh
Q 012670 345 SIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILT 403 (458)
Q Consensus 345 s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~ 403 (458)
+.+|+++-..+.|+..+-.....+.++-+..|++.+..+..+..+....|-..|..+.-
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 56788899999999999999999999999999999999998888888888877766544
No 296
>PF12832 MFS_1_like: MFS_1 like family
Probab=26.20 E-value=1.5e+02 Score=21.98 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=13.2
Q ss_pred cCccccchhhhHHHHHhhhhh
Q 012670 263 PASLSSFDVISVIFWVPIYDK 283 (458)
Q Consensus 263 ~~~l~~ln~~~vi~~~pl~~~ 283 (458)
.+.+..+.++.-++..|+.+.
T Consensus 37 iGil~~i~~~~~~~~~pl~g~ 57 (77)
T PF12832_consen 37 IGILSAIRPLIRFLAPPLWGF 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666677777776
No 297
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.48 E-value=1.1e+02 Score=23.76 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHhHhhhhccccccchhhhHHHHHHHHHHHHH
Q 012670 74 FFNWFYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIAS 119 (458)
Q Consensus 74 ~~~~~~~~~niG~~igp~l~g~l~~~~gw~~~F~i~~i~~~l~~ii 119 (458)
+=-++...+.+|+.+|.+.| +..++++|.. ++.+....+..++
T Consensus 24 aEr~~q~ilti~aiVg~i~G-f~~Qqls~tv--y~vg~~~v~t~li 66 (101)
T KOG4112|consen 24 AERFQQLILTIGAIVGFIYG-FAQQQLSVTV--YIVGAGFVFTLLI 66 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHh
Confidence 44478888999999999875 5666677544 3333333344443
No 298
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=24.68 E-value=22 Score=34.47 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=3.8
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhh
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLI 93 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~ 93 (458)
.+.+.+++..+++|+..|-..+.......+..+++| |+.+-.+.....++|-.+|..++
T Consensus 246 ~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e------~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 246 NSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEE------RELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp ---------------------HHHH----------------------------------------
T ss_pred cchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888899999999999999999999888776 88888888889999988887664
No 299
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.08 E-value=35 Score=28.31 Aligned_cols=16 Identities=0% Similarity=-0.290 Sum_probs=8.0
Q ss_pred hhhhHHHHHHHHHHHH
Q 012670 103 GLGFGIPALFMGFAIA 118 (458)
Q Consensus 103 ~~~F~i~~i~~~l~~i 118 (458)
||++++..++.++.++
T Consensus 1 RW~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFL 16 (130)
T ss_pred CeeeHHHHHHHHHHHH
Confidence 5666655444443333
No 300
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=23.27 E-value=3.5e+02 Score=27.42 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVV 405 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~ 405 (458)
.++.++.+.+.+.++|.+- .|...++-....|...|+.-+-.. ....+|.++...+.-..
T Consensus 164 pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~v 223 (528)
T KOG0253|consen 164 PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGV 223 (528)
T ss_pred CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHH
Confidence 4677788888899998888 888888888999999988876655 66677776665554433
No 301
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=21.87 E-value=8.1e+02 Score=24.49 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=23.3
Q ss_pred ccchhhHHHHHHH-HHHHHHhHhhhhccccccchhhhHHHHHHHHH
Q 012670 71 KGSFFNWFYFSIN-IGALISSSLIVWIQDNAGWGLGFGIPALFMGF 115 (458)
Q Consensus 71 R~~~~~~~~~~~n-iG~~igp~l~g~l~~~~gw~~~F~i~~i~~~l 115 (458)
|-..++-...++. .|+.+||++ +..+||--.|+...+..++
T Consensus 54 ~~vlfghhf~sIAGaGPI~GPi~----aa~~GwlPa~lWI~~G~if 95 (376)
T PF02554_consen 54 KWVLFGHHFASIAGAGPIVGPIL----AAQFGWLPALLWIVFGCIF 95 (376)
T ss_pred hHHhhHHHHHHHhccccchHHHH----HHHhcchHHHHHHHHccHH
Confidence 5666666555543 455555554 4578998556555443333
No 302
>COG3619 Predicted membrane protein [Function unknown]
Probab=20.50 E-value=6.8e+02 Score=23.07 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccc
Q 012670 431 FWLLAGLSIFNMLLYVVCAKKYKQKK 456 (458)
Q Consensus 431 f~~~a~i~~~~~v~~~~~~~~~~~~~ 456 (458)
.+..+.+.+.....+....+|+|.+.
T Consensus 200 l~~~~~~i~~~~~~~~~~~~~~k~~~ 225 (226)
T COG3619 200 LWVVAALILAVYLLALFDLRRWKSKF 225 (226)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34444444444444555555555543
Done!