Query 012670
Match_columns 458
No_of_seqs 151 out of 1419
Neff 9.1
Searched_HMMs 13730
Date Mon Mar 25 13:57:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012670.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012670hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.6 1.7E-15 1.3E-19 149.8 17.0 88 30-123 115-203 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.3 1.2E-11 8.5E-16 119.2 14.0 119 299-454 286-405 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 98.5 1.3E-06 9.2E-11 84.7 17.2 143 264-449 62-204 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 97.7 8E-06 5.8E-10 77.1 3.8 89 29-123 310-399 (417)
5 d1y0jb1 g.37.1.2 (B:1-36) U-sh 20.1 39 0.0028 18.1 2.4 19 12-30 3-21 (36)
6 d1kala_ g.3.3.1 (A:) Kalata B1 15.5 32 0.0023 17.4 1.3 12 16-27 15-26 (29)
7 d2csha2 g.37.1.1 (A:61-104) Zi 11.5 30 0.0022 19.7 0.5 6 13-18 3-8 (44)
8 d2qkwa1 a.8.8.1 (A:29-129) Avi 6.9 85 0.0062 20.5 1.3 25 367-391 25-49 (101)
9 d1n1ua_ g.3.3.1 (A:) Kalata B1 6.3 1E+02 0.0075 15.7 1.2 12 16-27 3-14 (29)
10 d2e74d2 f.23.12.1 (D:12-45) IS 5.8 2.1E+02 0.015 15.0 2.3 20 71-90 4-23 (34)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.63 E-value=1.7e-15 Score=149.84 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHHHHHHHHHHHHhHhhhhcccc-ccchhhhHH
Q 012670 30 QYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFYFSINIGALISSSLIVWIQDN-AGWGLGFGI 108 (458)
Q Consensus 30 ~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~~~~niG~~igp~l~g~l~~~-~gw~~~F~i 108 (458)
+...+++.+++.|++.|...|...++++|++++++ |+++++++..+.++|..++|.+++++.+. .+||+.|++
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~ 188 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 188 (447)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence 56788999999999999999999999999999887 99999999999999999999999886664 489999999
Q ss_pred HHHHHHHHHHHHHhc
Q 012670 109 PALFMGFAIASFFSG 123 (458)
Q Consensus 109 ~~i~~~l~~ii~~~~ 123 (458)
.++..++..++.+..
T Consensus 189 ~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 189 PAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHh
Confidence 887665555544333
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.29 E-value=1.2e-11 Score=119.23 Aligned_cols=119 Identities=8% Similarity=-0.038 Sum_probs=93.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccchhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchh
Q 012670 299 FSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDA 378 (458)
Q Consensus 299 ~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~ 378 (458)
..+.+.+.++.++.+++++.+... .+.++.++..++.+++.+...+...+++.+..|++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 344 (417)
T d1pv7a_ 286 IGGKNALLLAGTIMSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR 344 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred cccccchhhhHHHHHHhhhccccc---------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh
Confidence 344466777877777777766553 36677788889999999999999999999999999
Q ss_pred hHHHHHHHH-HHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 012670 379 MRSLCSALS-LLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQ 454 (458)
Q Consensus 379 ~~g~~~g~~-~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~~~~v~~~~~~~~~~~ 454 (458)
.||...|+. ++...+|..+++.+.+.+.+.. ++...|.+.++++++..++..+..|+.++
T Consensus 345 ~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 345 FSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999975 5678899999999988776432 24567888888888888877777665543
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.51 E-value=1.3e-06 Score=84.68 Aligned_cols=143 Identities=14% Similarity=0.035 Sum_probs=102.9
Q ss_pred CccccchhhhHHHHHhhhhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc
Q 012670 264 ASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP 343 (458)
Q Consensus 264 ~~l~~ln~~~vi~~~pl~~~~~~~l~~r~~~~~~~~~~~~~~~~G~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+++.....+...+..++.++ +.+| ..+++.+.++.++.+++.++.+..... .
T Consensus 62 g~~~s~~~~~~~~~~~~~G~----l~Dr-------~g~r~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 113 (447)
T d1pw4a_ 62 GFALSGISIAYGFSKFIMGS----VSDR-------SNPRVFLPAGLILAAAVMLFMGFVPWA-----------------T 113 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHH-------SCHHHHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHH-------cCchHHHHHHHHHHHHHHhhccccchh-----------------h
Confidence 34455555555566666666 4555 344467788888888888877764322 1
Q ss_pred chhHHHHHHHHHHhHHHHHhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhccCCCcCCCCCCCC
Q 012670 344 ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTVVTYFTTAGGKTGWIPDNLN 423 (458)
Q Consensus 344 ~s~~~li~~~~l~g~ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (458)
.+.+++++..++.+++++...+...+++.+..|++.|+..+|+++....+|..+++.+......... +|
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-----~w------ 182 (447)
T d1pw4a_ 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DW------ 182 (447)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CS------
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh-----cc------
Confidence 3667788899999999999999999999999999999999999999999999999988776543221 23
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhh
Q 012670 424 KGHLDYFFWLLAGLSIFNMLLYVVCA 449 (458)
Q Consensus 424 ~~~~~~~f~~~a~i~~~~~v~~~~~~ 449 (458)
...|.+.++++++..++.+...
T Consensus 183 ----~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 183 ----HAALYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp ----TTCTHHHHHHHHHHHHHHHHHC
T ss_pred ----cccchhhhhhHHHHHHHHHHhc
Confidence 2335555556555555554443
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=97.70 E-value=8e-06 Score=77.10 Aligned_cols=89 Identities=9% Similarity=-0.039 Sum_probs=75.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhccCCCCCChhhhhhccchhhHHH-HHHHHHHHHHhHhhhhccccccchhhhH
Q 012670 29 AQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDSNERVKKGSFFNWFY-FSINIGALISSSLIVWIQDNAGWGLGFG 107 (458)
Q Consensus 29 ~~~~~~~~~l~l~g~g~g~~~p~~~a~v~d~~~~~~~~~~~~R~~~~~~~~-~~~niG~~igp~l~g~l~~~~gw~~~F~ 107 (458)
.+.+..++..++.|++.+...|...+.+.|.+|+++ |++++++.+ ....+|..++|.++|++.|++||++.|+
T Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 367777888899999999999999999999999887 999999864 5677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012670 108 IPALFMGFAIASFFSG 123 (458)
Q Consensus 108 i~~i~~~l~~ii~~~~ 123 (458)
+.++..++..++.++.
T Consensus 384 ~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 384 VLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9887666666554433
No 5
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=20.13 E-value=39 Score=18.09 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=16.4
Q ss_pred CCCCCCcCCCCCCCCCCch
Q 012670 12 ALKPAECVGALCPSATPAQ 30 (458)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ 30 (458)
+||||.-...-|++.+++.
T Consensus 3 llkparf~c~pcgirfss~ 21 (36)
T d1y0jb1 3 LLKPARFMCLPCGIAFSSP 21 (36)
T ss_dssp CCSCCCCBCTTTCCBCSCH
T ss_pred cccccceeccccceeecCh
Confidence 6899999999999988764
No 6
>d1kala_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=15.54 E-value=32 Score=17.35 Aligned_cols=12 Identities=33% Similarity=0.886 Sum_probs=10.0
Q ss_pred CCcCCCCCCCCC
Q 012670 16 AECVGALCPSAT 27 (458)
Q Consensus 16 ~~~~~~~~~~~~ 27 (458)
..|||..|+.+.
T Consensus 15 etcvggtcntpg 26 (29)
T d1kala_ 15 ETCVGGTCNTPG 26 (29)
T ss_dssp CCCTTSCCSCTT
T ss_pred ccccccccCCCC
Confidence 579999999874
No 7
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.52 E-value=30 Score=19.74 Aligned_cols=6 Identities=67% Similarity=1.470 Sum_probs=3.0
Q ss_pred CCCCCc
Q 012670 13 LKPAEC 18 (458)
Q Consensus 13 ~~~~~~ 18 (458)
|||-||
T Consensus 3 iKPYeC 8 (44)
T d2csha2 3 IKPYEC 8 (44)
T ss_dssp CCCEEC
T ss_pred CCceec
Confidence 455555
No 8
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas syringae [TaxId: 317]}
Probab=6.90 E-value=85 Score=20.48 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=20.6
Q ss_pred hhhhhhcccchhhHHHHHHHHHHHH
Q 012670 367 QLEFFYDQSPDAMRSLCSALSLLTT 391 (458)
Q Consensus 367 ~~~~~~~~aP~~~~g~~~g~~~~~~ 391 (458)
.-+++.+++|++.|..+..++.-..
T Consensus 25 qhefissqap~slr~~ynnlyshtq 49 (101)
T d2qkwa1 25 QHEFVSSQAPQSLRNRYNNLYSHTQ 49 (101)
T ss_dssp HHTTTSSSCCSSGGGHHHHHHHHHH
T ss_pred HHHHHhhcCcHHHHHHHhhHHHHHH
Confidence 3589999999999999988876543
No 9
>d1n1ua_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=6.26 E-value=1e+02 Score=15.67 Aligned_cols=12 Identities=33% Similarity=0.886 Sum_probs=8.4
Q ss_pred CCcCCCCCCCCC
Q 012670 16 AECVGALCPSAT 27 (458)
Q Consensus 16 ~~~~~~~~~~~~ 27 (458)
..|+|..|+.+.
T Consensus 3 etc~ggtc~tpg 14 (29)
T d1n1ua_ 3 ETCVGGTCNTPG 14 (29)
T ss_dssp CBCTTSCCSSTT
T ss_pred ceeeCCeecCCC
Confidence 358888887764
No 10
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.83 E-value=2.1e+02 Score=15.02 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=13.7
Q ss_pred ccchhhHHHHHHHHHHHHHh
Q 012670 71 KGSFFNWFYFSINIGALISS 90 (458)
Q Consensus 71 R~~~~~~~~~~~niG~~igp 90 (458)
|..++.+..++..-|.++|.
T Consensus 4 rrqfmnlltfgt~tg~alg~ 23 (34)
T d2e74d2 4 RRQFMNLLAFGTVTGVALGA 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhh
Confidence 55677777777777766664
Done!