BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012671
(458 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PAX2|ATD3B_XENLA ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis
GN=atad3-b PE=2 SV=1
Length = 593
Score = 166 bits (419), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 183/348 (52%), Gaps = 27/348 (7%)
Query: 67 RGSGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDV 126
+ S FDP LERAAKA RE + SRHA+EA ++ + QE+T E + YEA Q+
Sbjct: 42 KWSNFDPTGLERAAKAARELDQSRHAKEALNLAKVQEETLQMEQQAKIKEYEAAVEQIKN 101
Query: 127 ERQRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEES 183
E+ R +EE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QEES
Sbjct: 102 EQIRVQSEEKRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEES 158
Query: 184 SIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRML 243
++E R++T E E+ + ++ AEA RA + D R +
Sbjct: 159 VQKQEAMRKATVEH-----------EMELRHKNDMLRIEAEAHARAKVERENADIIREQI 207
Query: 244 IERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVT 303
+ R+ L +I T + EG R+ ++D +K+ TV G T LA G+YT + G V
Sbjct: 208 RLKAAEHRQTVLESIKTAGTVFGEGFRTFISDWDKVTATVAGLTLLAVGVYTAKNGTGVA 267
Query: 304 WGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILH 363
Y+ LG+PSL+R++S + ++K I +K G +IL
Sbjct: 268 GRYIEARLGKPSLVRDTSRITVVEAIKHPIKISKRIFSKIQDALEG----------VILS 317
Query: 364 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
P L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A S
Sbjct: 318 PRLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHS 365
>sp|Q6NVR9|ATAD3_XENTR ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis
GN=atad3 PE=2 SV=1
Length = 594
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 191/365 (52%), Gaps = 61/365 (16%)
Query: 67 RGSGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDV 126
+ S FDP LERAAKA RE + SRHA+EA ++ + QE+T E + YEA Q+
Sbjct: 42 KWSNFDPTGLERAAKAARELDQSRHAKEALNLAKVQEETLQLEQQSKIKEYEAAVEQLKN 101
Query: 127 ERQRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEES 183
E+ R AEE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QEES
Sbjct: 102 EQIRVQAEERRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEES 158
Query: 184 SIRKEQARRSTEE------------QIQAQQRL---TEKERAEIERETIRVKAMAEAEGR 228
++E R++T E +I+A+ R E+E A+I RE IR+KA
Sbjct: 159 VQKQEAMRKATVEHEMELRHKNEMLRIEAEARARAKVERENADIIRENIRLKAA------ 212
Query: 229 AHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATA 288
+H R+ L +I T + EG R+ ++D +K+ TV G +
Sbjct: 213 --------EH------------RQTVLESIKTAGTVFGEGFRAFISDWDKVTATVAGLSL 252
Query: 289 LAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQA--MNKVIRNKTSAG 346
LA GIYT + V Y+ LG+PSL+R++S +F + + ++K + +K
Sbjct: 253 LAVGIYTAKNATGVAGRYIEARLGKPSLVRDTS--RFTVAEAVKHPVKISKRLLSKIQDA 310
Query: 347 TAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVARE 406
G +IL P L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A++
Sbjct: 311 LEG----------VILSPKLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKK 360
Query: 407 IARKS 411
+A S
Sbjct: 361 LAMHS 365
>sp|Q58E76|ATD3A_XENLA ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis
GN=atad3-a PE=2 SV=1
Length = 593
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 187/363 (51%), Gaps = 57/363 (15%)
Query: 67 RGSGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDV 126
+ S FDP LERAAKA RE + SRHA+EA ++ + QE+T E + YEA Q+
Sbjct: 42 KWSNFDPTGLERAAKAARELDQSRHAKEAINLAKVQEETLQMEQQAKIKEYEAAVEQLKN 101
Query: 127 ERQRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEES 183
E+ R AEE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QE+S
Sbjct: 102 EQIRVQAEERRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEDS 158
Query: 184 SIRKEQARRSTEE------------QIQAQQRL---TEKERAEIERETIRVKAMAEAEGR 228
++E RR+T E +I+A+ R E+E A+I RE IR+KA
Sbjct: 159 VQKQEAMRRATVEHEMELRHKNEMLRIEAEARAQAKVERENADIIREQIRLKAA------ 212
Query: 229 AHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATA 288
+H R+ L +I T + EG R+ ++D +K+ TV G T
Sbjct: 213 --------EH------------RQTVLESIKTAGTVFGEGFRTFISDWDKVTATVAGLTL 252
Query: 289 LAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTA 348
LA G+YT + V Y+ LG+PSL+R++S + + K + +K
Sbjct: 253 LAVGVYTAKNATGVAGRYIEARLGKPSLVRDTSRITVAEAVKHPIKITKRLYSKIQDALE 312
Query: 349 GPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
G +IL P L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A
Sbjct: 313 G----------VILSPRLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLA 362
Query: 409 RKS 411
S
Sbjct: 363 MHS 365
>sp|Q20748|ATAD3_CAEEL ATPase family AAA domain-containing protein 3 OS=Caenorhabditis
elegans GN=atad-3 PE=3 SV=2
Length = 595
Score = 162 bits (409), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 187/350 (53%), Gaps = 39/350 (11%)
Query: 71 FDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQR 130
FD ALERAAKA R+ +A+EA ++ R QE TR E++ E EA + + E R
Sbjct: 47 FDSTALERAAKAARDLEKFPNAKEALELSRMQEVTRQKEVENETKKIEAQLANMKSEHIR 106
Query: 131 KLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQA 190
EE R + ++ + +D+LARKR + + + R E ++ QEES ++EQ
Sbjct: 107 VAEEERRKTLGEETKHAHSRAEYQDQLARKRAEEELAMKARMQEESLRKQEESVKKQEQL 166
Query: 191 RRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGR---AHEAKLTEDHNRRMLIERI 247
R+ T E A + E E+ I+ ET R +A A + R + KL E+ NR+ +IE+
Sbjct: 167 RKQTIEHELALKHKYELEK--IDAET-RARAKAARDNRDVNLEQMKLHEEENRKTVIEK- 222
Query: 248 NGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYV 307
I T+ I G+ L D+ K+ VGG TALA G YT + G VT Y+
Sbjct: 223 ----------IKTSGELIGSGLNQFLNDKTKIAAAVGGLTALAVGWYTAKRGTGVTARYI 272
Query: 308 NRILGQPSLIRESS------IGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDII 361
LG+PSL+RE+S + K P +++ + R K P+ NG ++
Sbjct: 273 ESRLGKPSLVRETSRITPLEVLKHP-----IKSVQMMTRQKKD-----PL-----NG-VV 316
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
L P+L+RR++ +A T+NTK + FRN++FYGPPGTGKT+ A+ +A+ S
Sbjct: 317 LPPALERRLRDIAITTSNTKRNNGLFRNVMFYGPPGTGKTLFAKSLAQHS 366
>sp|A7YWC4|ATAD3_BOVIN ATPase family AAA domain-containing protein 3 OS=Bos taurus
GN=ATAD3 PE=2 SV=1
Length = 586
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/348 (34%), Positives = 186/348 (53%), Gaps = 27/348 (7%)
Query: 67 RGSGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDV 126
+ S FDP LERAAKA RE SRHA+EA + + QEQT E + YEA Q+
Sbjct: 45 KWSNFDPTGLERAAKAARELEHSRHAKEALSLAQMQEQTLQLEHQAKLKEYEAAVEQLKG 104
Query: 127 ERQRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEES 183
++ R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES
Sbjct: 105 DQIRVQAEERRKTLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEES 161
Query: 184 SIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRML 243
++E RR+T E+ + E R E E A+ + +L +R+ +
Sbjct: 162 VQKQEALRRATVEREMELRHKNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTI 221
Query: 244 IERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVT 303
+E +I T + EG R+ +TD +K+ TV G T LA GIY+ + V
Sbjct: 222 LE-----------SIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGIYSAKNATSVA 270
Query: 304 WGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILH 363
Y+ LG+PSL+RE+S + +A+ I+ + P +A++ ++L
Sbjct: 271 GRYIEARLGKPSLVRETS------RITVLEALRHPIQVSRRL-LSKPQDALEG---VVLS 320
Query: 364 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
PSL+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A S
Sbjct: 321 PSLEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHS 368
>sp|Q5T9A4|ATD3B_HUMAN ATPase family AAA domain-containing protein 3B OS=Homo sapiens
GN=ATAD3B PE=1 SV=1
Length = 648
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 190/349 (54%), Gaps = 33/349 (9%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE SR+A+EA ++ + QEQT E + YEA Q+ E+
Sbjct: 48 SNFDPTGLERAAKAARELEHSRYAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQ 107
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES
Sbjct: 108 IRAQAEERRKTLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQ 164
Query: 186 RKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIE 245
++E RR+T ++ + L K E +RV+ EA RA + D R +
Sbjct: 165 KQEAMRRAT---VEREMELRHKN------EMLRVE--TEARARAKAERENADIIREQIRL 213
Query: 246 RINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWG 305
+ + R+ L +I T + EG R+ +TDR+K+ TV G T LA G+Y+ + VT
Sbjct: 214 KASEHRQTVLESIRTAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTGR 273
Query: 306 YVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDIIL 362
++ LG+PSL+RE+S + + +R+ + P + ++ ++L
Sbjct: 274 FIEARLGKPSLVRETS----------RITVLEALRHPIQVSRRLLSRPQDVLEG---VVL 320
Query: 363 HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
PSL+ R++ +A AT NTK ++ +R++L YGPPGTGKT+ A+++A S
Sbjct: 321 SPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHS 369
>sp|Q3KRE0|ATAD3_RAT ATPase family AAA domain-containing protein 3 OS=Rattus norvegicus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 196/395 (49%), Gaps = 44/395 (11%)
Query: 34 FSFFSSSPQPTSSGNDEAEQTADAQKSREPEEPRGSG-----------FDPEALERAAKA 82
S+ P G AQ E RG+G FDP LERAAKA
Sbjct: 1 MSWLFGIKGPKGEGTGPPLPLPPAQPGAESGGDRGAGDRPSPKDKWSNFDPTGLERAAKA 60
Query: 83 LREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQ 142
RE SRHA+EA ++ + QEQT E + YEA Q+ E+ R AEE R + +
Sbjct: 61 ARELEHSRHAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRVQAEERRKTLNE 120
Query: 143 KA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQ 199
+ QARAQ +D+LAR+R + + Q+ N E ++ QEES ++E RR+T E+
Sbjct: 121 ETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAIRRATVEREM 177
Query: 200 AQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAIN 259
+ E R E E A+ + +L +R+ ++E +I
Sbjct: 178 ELRHKNEMLRVEAEARARAKADRENADIIREQIRLKAAEHRQTILE-----------SIR 226
Query: 260 TTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRE 319
T + EG R+ +TD +K+ TV G T LA G+Y+ + V Y+ LG+PSL+RE
Sbjct: 227 TAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVAGRYIEARLGKPSLVRE 286
Query: 320 SSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDIILHPSLQRRIQHLAKA 376
+S ++ + +R+ + P +A++ +IL PSL+ R++ +A A
Sbjct: 287 TS----------RISVLEALRHPIQVSRRLVSRPQDALEG---VILSPSLEARVRDIAIA 333
Query: 377 TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
T NTK +++ +RN+L YGPPGTGKT+ A+++A S
Sbjct: 334 TRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHS 368
>sp|Q925I1|ATAD3_MOUSE ATPase family AAA domain-containing protein 3 OS=Mus musculus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/351 (34%), Positives = 187/351 (53%), Gaps = 33/351 (9%)
Query: 67 RGSGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDV 126
+ S FDP LERAAKA RE SRHA+EA + + QEQT E + YEA Q+
Sbjct: 45 KWSNFDPTGLERAAKAARELEHSRHAKEALSLAQMQEQTLQLEQQSKLKEYEAAVEQLKS 104
Query: 127 ERQRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEES 183
E+ R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES
Sbjct: 105 EQIRVQAEERRKTLTEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEES 161
Query: 184 SIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRML 243
++E RR+T E+ + E R E E A+ + +L +R+ +
Sbjct: 162 VQKQEAIRRATVEREMELRHKNEMLRVEAEARARAKADRENADIIREQIRLKAAEHRQTI 221
Query: 244 IERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVT 303
+E +I T + + EG R+ +TD +K+ TV G T LA G+Y+ + V
Sbjct: 222 LE-----------SIRTAGTLLGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVA 270
Query: 304 WGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDI 360
Y+ LG+PSL+RE+S ++ + +R+ + P +A++ +
Sbjct: 271 GRYIEARLGKPSLVRETS----------RISVLEALRHPIQVSRRLVSRPQDALEG---V 317
Query: 361 ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
IL PSL+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A S
Sbjct: 318 ILSPSLEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHS 368
>sp|Q9NVI7|ATD3A_HUMAN ATPase family AAA domain-containing protein 3A OS=Homo sapiens
GN=ATAD3A PE=1 SV=2
Length = 634
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 119/399 (29%), Positives = 189/399 (47%), Gaps = 81/399 (20%)
Query: 67 RGSGFDPEALERAAKALREFNSSRHAREAFDI-----------------MR--------- 100
+ S FDP LERAAKA RE SR+A++A ++ MR
Sbjct: 46 KWSNFDPTGLERAAKAARELEHSRYAKDALNLAQMQEQTLQLEQQSKLKMRLEALSLLHT 105
Query: 101 ------------KQEQTRLA-ELDVEKV---------HYEAIQSQVDVERQRKLAEEHRN 138
Q Q RL+ E+V YEA Q+ E+ R AEE R
Sbjct: 106 LVWAWSLCRAGAVQTQERLSGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRK 165
Query: 139 LVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTE 195
+ ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES ++E RR+T
Sbjct: 166 TLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATV 222
Query: 196 EQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWL 255
E+ + E R E E A+ + +L +R+ ++E
Sbjct: 223 EREMELRHKNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTVLE---------- 272
Query: 256 AAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPS 315
+I T + EG R+ +TD +K+ TV G T LA G+Y+ + V ++ LG+PS
Sbjct: 273 -SIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATLVAGRFIEARLGKPS 331
Query: 316 LIRESSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDIILHPSLQRRIQH 372
L+RE+S + + +R+ + P +A++ ++L PSL+ R++
Sbjct: 332 LVRETS----------RITVLEALRHPIQVSRRLLSRPQDALEG---VVLSPSLEARVRD 378
Query: 373 LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
+A AT NTK +++ +RN+L YGPPGTGKT+ A+++A S
Sbjct: 379 IAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLALHS 417
>sp|Q5T2N8|ATD3C_HUMAN ATPase family AAA domain-containing protein 3C OS=Homo sapiens
GN=ATAD3C PE=2 SV=2
Length = 411
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 95/167 (56%), Gaps = 9/167 (5%)
Query: 245 ERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTW 304
E + + +L +I + EG R+ +TDR+K+ TV G T LA G+Y+ + VT
Sbjct: 37 ESVQKHHQTFLESIRAAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTG 96
Query: 305 GYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHP 364
Y+ LG+PSL+RE+S + +A+ I+ + + P + ++ ++L P
Sbjct: 97 RYIEARLGKPSLVRETS------RITVLEALRHPIQQVSRRLLSRPQDVLEG---VVLSP 147
Query: 365 SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
SL+ R++ +A T N K ++ +R++L YGPPGTGKT+ A+++A S
Sbjct: 148 SLEARVRDIAIMTRNIKKNRGLYRHILLYGPPGTGKTLFAKKLALHS 194
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 96/187 (51%), Gaps = 20/187 (10%)
Query: 82 ALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQ 141
AL+ R +E + +++QEQ RL E+ E +Q + +++RQ + + ++
Sbjct: 2738 ALKRQEQERLQKE--EELKRQEQERL-----EREKQEQLQKEEELKRQEQERLQKEEALK 2790
Query: 142 QKAQARAQGLRNEDELARK---RLQTDHEAQRRHNTELVKMQEESSIRKEQA-RRSTEEQ 197
++ Q R L+ E+EL R+ RL+ + + Q + EL K QE+ ++KE+A +R +E+
Sbjct: 2791 RQEQER---LQKEEELKRQEQERLEREKQEQLQKEEEL-KRQEQERLQKEEALKRQEQER 2846
Query: 198 IQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAA 257
+Q ++ L +E+ +ER+ I + AE H E +++ + + E+++ +
Sbjct: 2847 LQKEEELKRQEQERLERKKIEL-----AEREQHIKSKLESDMVKIIKDELTKEKDEIIKN 2901
Query: 258 INTTFSH 264
+ H
Sbjct: 2902 KDIKLRH 2908
>sp|A7GY23|RNY_CAMC5 Ribonuclease Y OS=Campylobacter curvus (strain 525.92) GN=rny PE=3
SV=2
Length = 517
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 74/138 (53%), Gaps = 20/138 (14%)
Query: 130 RKLAEEHRNLVQQKAQARAQGLRNEDELARKR-----LQTDHEAQRRHNTELVKMQEESS 184
+K+ + + N+ ++A+A+A+ + E EL K + + EA++R++ + K+Q+E S
Sbjct: 23 KKINDANYNIFLEQAKAKAKAIEYEAELTLKNSKISVQEAEFEAKKRYDDKTTKLQKEYS 82
Query: 185 ------IRKEQARRSTEEQIQAQQRLTEKERAEIE---RETIRVKAMAEAEGRA------ 229
+KEQ + +E + + L EK+R E + E + +KA +++ +
Sbjct: 83 QKFDELNKKEQILLNEQELLNENKELFEKDRNEAKLTYEEGLNLKATYQSKVQEALKVLE 142
Query: 230 HEAKLTEDHNRRMLIERI 247
H A LTED R ++++++
Sbjct: 143 HAAGLTEDEAREVVLKKV 160
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3
Length = 4684
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 19/138 (13%)
Query: 98 IMRKQEQTRLAELD--VEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNED 155
+ R +E+ RLAE E+ +++ + E+QR+LAE H AQA+AQ R
Sbjct: 1478 LRRMEEEERLAEQQRAEERERLAEVEAAL--EKQRQLAEAH-------AQAKAQAEREAK 1528
Query: 156 ELARKRLQTDHEAQRRHNTELVKMQEESSIRKE--QARRSTEEQIQAQQR---LTEKERA 210
EL ++R+Q E RR + Q++ SI++E Q R+S+E +IQA+ R E+ R
Sbjct: 1529 EL-QQRMQ--EEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAERSRL 1585
Query: 211 EIERETIRVKAMAEAEGR 228
IE E V+ EA R
Sbjct: 1586 RIEEEIRVVRLQLEATER 1603
>sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain protein 2B OS=Gallus
gallus GN=BAZ2B PE=2 SV=1
Length = 2130
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 21/183 (11%)
Query: 80 AKALREFNSSRHAREAFDI-----MRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAE 134
AK LR+ + AR+A I ++KQEQ R A+ E +AI + E +RK E
Sbjct: 797 AKLLRKLQAQEIARQAAQIKLLRKLQKQEQARAAK---EAKKQQAIMA---AEEKRKQKE 850
Query: 135 EHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRST 194
+ + + QQ+ R Q +R E EL +++ + ++ ++ E I++++ RR
Sbjct: 851 QIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEKEMRR-- 908
Query: 195 EEQIQAQQRLTEKERAEIERE-----TIRVKAMAEAEGRAHEAKLTEDHNRRMLIERING 249
++ + + + E+ R ++ERE + +KAM EA +A E + + R +R+N
Sbjct: 909 QQAVLLKHQELERHRLDMERERRRQHMMLMKAM-EARKKAEEKERLKQEKRDE--KRLNK 965
Query: 250 ERE 252
ER+
Sbjct: 966 ERK 968
>sp|Q9JI55|PLEC_CRIGR Plectin (Fragment) OS=Cricetulus griseus GN=PLEC PE=1 SV=1
Length = 4473
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 30/122 (24%)
Query: 128 RQRKLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQR-RHNTELVKMQEESSIR 186
R R+LAEE +L QQ+A A +++ ++++Q EA R + EL++ Q+E +
Sbjct: 2218 RLRQLAEE--DLAQQRALA--------EKMLKEKMQAVQEATRLKAEAELLQQQKE--LA 2265
Query: 187 KEQARRSTE----------EQIQAQQRLTEKER-------AEIERETIRVKAMAEAEGRA 229
+EQARR E E+ Q QR E ER AE ER +R+ M+ A+ RA
Sbjct: 2266 QEQARRLQEDKEQMAQQLVEETQGFQRTLEVERQRQLEMSAEAERLKLRMAEMSRAQARA 2325
Query: 230 HE 231
E
Sbjct: 2326 EE 2327
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 98 IMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDEL 157
+ R +E+ RLAE + + + +E+QR+LAE H AQA+AQ EL
Sbjct: 1267 LRRMEEEERLAEQQRAEERERLAEGEAALEKQRQLAEAH-------AQAKAQAELEAQEL 1319
Query: 158 ARKRLQTDHEAQRRHNTELVKMQEESSIRKE--QARRSTEEQIQA---QQRLTEKERAEI 212
R R+Q E RR + Q++ SI++E R+S+E +IQA Q E+ R I
Sbjct: 1320 QR-RMQ--EEVARREEAAVNAQQQKRSIQEELQHLRQSSEAEIQAKAQQVEAAERSRMRI 1376
Query: 213 ERETIRV 219
E E IRV
Sbjct: 1377 EEE-IRV 1382
>sp|C0H5F4|RBP2B_PLAF7 Reticulocyte binding protein 2 homolog b OS=Plasmodium falciparum
(isolate 3D7) GN=Rh2b PE=3 SV=1
Length = 3179
Score = 33.9 bits (76), Expect = 3.1, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 121 QSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQ 180
+ +++ E+Q +L +E +Q+ Q + Q ++RLQ + E +R+ L + +
Sbjct: 2630 KERLEREKQEQLKKEALKKQEQERQEQQQKEEALKRQEQERLQKEEELKRQEQERLEREK 2689
Query: 181 EESSIRKEQARRSTEEQIQAQ--QRLTEKERAEIERETI 217
+E ++E+ R+ +E+ Q + Q L E+++ EI E +
Sbjct: 2690 QEQLQKEEELRKKEQEKQQQRNIQELEEQKKPEIINEAL 2728
>sp|Q9QXS1|PLEC_MOUSE Plectin OS=Mus musculus GN=Plec PE=1 SV=2
Length = 4691
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 98 IMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDEL 157
+ R +E+ RLAE + + + +E+QR+LAE H AQA+AQ EL
Sbjct: 1486 LRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAH-------AQAKAQAELEAQEL 1538
Query: 158 ARKRLQTDHEAQRRHNTELVKMQEESSIRKE--QARRSTEEQIQA---QQRLTEKERAEI 212
R R+Q E RR + Q++ SI++E R+S+E +IQA Q E+ R I
Sbjct: 1539 QR-RMQ--EEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQVEAAERSRMRI 1595
Query: 213 ERETIRV 219
E E IRV
Sbjct: 1596 EEE-IRV 1601
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.127 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,372,076
Number of Sequences: 539616
Number of extensions: 6137531
Number of successful extensions: 57521
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 2561
Number of HSP's that attempted gapping in prelim test: 43823
Number of HSP's gapped (non-prelim): 9585
length of query: 458
length of database: 191,569,459
effective HSP length: 121
effective length of query: 337
effective length of database: 126,275,923
effective search space: 42554986051
effective search space used: 42554986051
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)