Query 012671
Match_columns 458
No_of_seqs 319 out of 2187
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:05:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0742 AAA+-type ATPase [Post 100.0 3E-100 6E-105 760.2 38.9 444 1-458 1-449 (630)
2 PF12037 DUF3523: Domain of un 100.0 4.8E-73 1E-77 547.7 26.8 259 60-318 18-276 (276)
3 KOG0742 AAA+-type ATPase [Post 100.0 4.5E-26 9.7E-31 228.8 26.9 263 6-295 1-273 (630)
4 COG1222 RPT1 ATP-dependent 26S 99.9 3.7E-23 8E-28 205.9 11.4 184 255-458 65-250 (406)
5 KOG0727 26S proteasome regulat 99.8 9.3E-20 2E-24 174.1 16.0 184 255-458 69-254 (408)
6 PF12037 DUF3523: Domain of un 99.8 2E-18 4.4E-23 167.9 19.9 207 61-292 14-226 (276)
7 COG1223 Predicted ATPase (AAA+ 99.8 8.4E-19 1.8E-23 168.2 8.4 100 353-458 116-216 (368)
8 KOG0728 26S proteasome regulat 99.8 5.4E-18 1.2E-22 162.0 12.4 175 254-458 60-246 (404)
9 KOG0738 AAA+-type ATPase [Post 99.7 4.4E-18 9.5E-23 170.9 8.9 101 352-458 206-310 (491)
10 KOG0726 26S proteasome regulat 99.7 2.9E-18 6.2E-23 166.8 5.9 186 253-458 97-284 (440)
11 KOG0734 AAA+-type ATPase conta 99.7 8.4E-18 1.8E-22 174.1 8.6 100 353-458 299-402 (752)
12 KOG0733 Nuclear AAA ATPase (VC 99.7 2E-17 4.3E-22 173.7 8.9 101 352-458 505-610 (802)
13 KOG0730 AAA+-type ATPase [Post 99.7 2.1E-17 4.5E-22 175.5 9.1 103 350-458 426-533 (693)
14 KOG0733 Nuclear AAA ATPase (VC 99.7 5.3E-17 1.2E-21 170.5 8.1 100 353-458 185-288 (802)
15 KOG0731 AAA+-type ATPase conta 99.7 8.3E-17 1.8E-21 175.2 9.0 103 350-458 303-409 (774)
16 KOG0739 AAA+-type ATPase [Post 99.7 7E-17 1.5E-21 157.6 7.6 104 349-458 124-231 (439)
17 KOG0651 26S proteasome regulat 99.6 1.9E-16 4.2E-21 155.3 6.7 180 252-458 44-231 (388)
18 KOG0736 Peroxisome assembly fa 99.6 3.8E-16 8.3E-21 167.6 8.3 100 353-458 667-770 (953)
19 KOG0737 AAA+-type ATPase [Post 99.6 8.9E-16 1.9E-20 154.0 7.1 102 351-458 85-192 (386)
20 PTZ00454 26S protease regulato 99.6 1.3E-14 2.8E-19 151.0 15.2 102 351-458 138-244 (398)
21 KOG0652 26S proteasome regulat 99.6 2E-14 4.3E-19 138.4 12.4 102 351-458 164-270 (424)
22 COG0542 clpA ATP-binding subun 99.5 4.3E-15 9.3E-20 162.9 6.2 99 360-458 493-612 (786)
23 COG0465 HflB ATP-dependent Zn 99.5 7.1E-15 1.5E-19 157.5 7.7 101 352-458 144-248 (596)
24 KOG0729 26S proteasome regulat 99.5 8.5E-15 1.8E-19 141.3 7.3 103 350-458 169-276 (435)
25 COG0464 SpoVK ATPases of the A 99.5 1.4E-14 3.1E-19 154.9 9.4 103 350-458 234-341 (494)
26 PTZ00361 26 proteosome regulat 99.5 1.2E-13 2.6E-18 145.1 13.2 101 352-458 177-282 (438)
27 PRK03992 proteasome-activating 99.5 3.3E-13 7.2E-18 140.4 15.6 101 352-458 125-230 (389)
28 CHL00195 ycf46 Ycf46; Provisio 99.5 7.6E-14 1.7E-18 148.5 9.2 100 353-458 223-324 (489)
29 KOG0735 AAA+-type ATPase [Post 99.5 1.2E-13 2.6E-18 147.5 9.4 100 353-458 662-766 (952)
30 PLN00020 ribulose bisphosphate 99.5 1.6E-13 3.4E-18 139.3 8.6 71 382-458 143-218 (413)
31 KOG0740 AAA+-type ATPase [Post 99.4 1.2E-13 2.7E-18 142.7 7.2 101 352-458 147-251 (428)
32 TIGR01241 FtsH_fam ATP-depende 99.4 2.7E-13 5.8E-18 145.3 9.7 101 352-458 49-153 (495)
33 TIGR01243 CDC48 AAA family ATP 99.4 5.2E-13 1.1E-17 149.4 9.1 100 353-458 448-552 (733)
34 CHL00176 ftsH cell division pr 99.4 8.7E-13 1.9E-17 144.5 9.6 101 352-458 177-281 (638)
35 TIGR01242 26Sp45 26S proteasom 99.4 6.3E-12 1.4E-16 129.6 13.1 101 352-458 116-221 (364)
36 PRK10865 protein disaggregatio 99.3 9.7E-12 2.1E-16 141.0 15.5 221 155-428 413-639 (857)
37 TIGR03689 pup_AAA proteasome A 99.3 3.9E-12 8.4E-17 135.7 8.9 104 352-458 176-295 (512)
38 CHL00206 ycf2 Ycf2; Provisiona 99.3 2.5E-12 5.5E-17 149.7 6.9 71 384-458 1627-1738(2281)
39 TIGR03346 chaperone_ClpB ATP-d 99.2 8.4E-11 1.8E-15 133.6 15.4 97 359-455 566-683 (852)
40 TIGR01243 CDC48 AAA family ATP 99.2 5.9E-11 1.3E-15 133.0 9.0 100 353-458 173-277 (733)
41 TIGR03345 VI_ClpV1 type VI sec 99.2 1.9E-10 4.2E-15 130.2 12.6 97 360-456 568-685 (852)
42 PF05496 RuvB_N: Holliday junc 99.1 1.2E-10 2.5E-15 111.5 8.4 65 353-420 19-83 (233)
43 PF00004 AAA: ATPase family as 99.1 7.5E-11 1.6E-15 102.4 6.1 63 390-458 1-64 (132)
44 KOG0732 AAA+-type ATPase conta 99.1 6.4E-11 1.4E-15 132.9 6.4 103 353-458 260-369 (1080)
45 KOG0744 AAA+-type ATPase [Post 99.1 1.4E-10 3E-15 115.1 7.8 103 356-458 140-254 (423)
46 KOG1051 Chaperone HSP104 and r 99.1 1.5E-11 3.2E-16 137.0 0.4 289 66-457 369-678 (898)
47 PRK10733 hflB ATP-dependent me 99.1 2.7E-10 6E-15 125.7 8.7 100 353-458 147-250 (644)
48 KOG0730 AAA+-type ATPase [Post 99.0 5.7E-10 1.2E-14 119.4 7.9 72 381-458 212-284 (693)
49 TIGR02881 spore_V_K stage V sp 99.0 6.1E-10 1.3E-14 109.8 7.2 93 357-458 5-111 (261)
50 COG2255 RuvB Holliday junction 98.9 7.7E-10 1.7E-14 108.3 4.7 98 354-455 22-119 (332)
51 COG2256 MGS1 ATPase related to 98.9 9.7E-10 2.1E-14 112.1 5.3 63 353-420 19-81 (436)
52 CHL00181 cbbX CbbX; Provisiona 98.9 2.2E-09 4.7E-14 107.5 7.7 91 359-458 24-128 (287)
53 TIGR00763 lon ATP-dependent pr 98.9 6E-08 1.3E-12 109.5 19.1 58 360-419 322-379 (775)
54 TIGR02880 cbbX_cfxQ probable R 98.8 6.8E-09 1.5E-13 103.8 8.2 91 359-458 23-127 (284)
55 KOG0741 AAA+-type ATPase [Post 98.8 2.7E-09 5.8E-14 111.6 4.3 61 382-448 251-312 (744)
56 CHL00095 clpC Clp protease ATP 98.8 1.2E-08 2.6E-13 115.8 7.3 97 360-456 511-628 (821)
57 KOG0743 AAA+-type ATPase [Post 98.7 1.6E-08 3.4E-13 104.8 7.2 67 353-419 196-267 (457)
58 TIGR00635 ruvB Holliday juncti 98.7 2.2E-08 4.9E-13 100.3 7.5 61 356-419 2-62 (305)
59 PRK00080 ruvB Holliday junctio 98.7 1.6E-08 3.4E-13 103.0 4.5 63 354-419 21-83 (328)
60 PRK05201 hslU ATP-dependent pr 98.7 4.1E-08 8.9E-13 102.1 7.3 89 360-453 17-112 (443)
61 PRK04195 replication factor C 98.7 4.2E-08 9.2E-13 105.0 7.6 65 354-422 10-74 (482)
62 TIGR02639 ClpA ATP-dependent C 98.7 4.5E-08 9.8E-13 109.8 8.1 91 354-458 178-280 (731)
63 TIGR00390 hslU ATP-dependent p 98.7 4.3E-08 9.2E-13 101.9 7.2 70 360-432 14-90 (441)
64 PRK11034 clpA ATP-dependent Cl 98.6 1.4E-08 3E-13 113.6 3.8 94 359-455 459-573 (758)
65 PRK05342 clpX ATP-dependent pr 98.6 9E-08 2E-12 100.3 9.3 71 360-433 73-152 (412)
66 TIGR02639 ClpA ATP-dependent C 98.6 2.6E-08 5.6E-13 111.8 3.9 94 359-455 455-569 (731)
67 KOG0989 Replication factor C, 98.6 7.7E-08 1.7E-12 95.3 5.4 53 353-413 31-83 (346)
68 COG0466 Lon ATP-dependent Lon 98.5 6E-06 1.3E-10 89.9 18.9 94 301-421 290-384 (782)
69 TIGR00382 clpX endopeptidase C 98.5 2E-07 4.3E-12 97.6 7.3 71 360-433 79-160 (413)
70 CHL00095 clpC Clp protease ATP 98.5 2.9E-07 6.4E-12 104.6 8.7 91 354-458 175-277 (821)
71 PRK06526 transposase; Provisio 98.5 1.1E-07 2.3E-12 93.7 4.1 54 369-430 85-141 (254)
72 KOG2004 Mitochondrial ATP-depe 98.4 6.1E-06 1.3E-10 89.6 16.3 35 387-421 438-472 (906)
73 PRK10865 protein disaggregatio 98.4 5E-07 1.1E-11 102.9 8.4 91 354-458 174-277 (857)
74 PRK13342 recombination factor 98.4 3.9E-07 8.5E-12 95.7 7.0 61 355-420 9-69 (413)
75 COG1219 ClpX ATP-dependent pro 98.4 2.8E-07 6E-12 91.8 5.0 73 360-435 63-143 (408)
76 PRK08181 transposase; Validate 98.4 2.8E-07 6.1E-12 91.4 4.9 41 387-430 106-149 (269)
77 PRK10787 DNA-binding ATP-depen 98.4 6E-06 1.3E-10 93.2 15.2 58 360-419 324-381 (784)
78 smart00382 AAA ATPases associa 98.4 7.3E-07 1.6E-11 76.2 5.9 33 387-419 2-37 (148)
79 PRK14962 DNA polymerase III su 98.3 4.7E-07 1E-11 96.6 5.4 54 353-413 9-62 (472)
80 COG1484 DnaC DNA replication p 98.3 1.9E-06 4.1E-11 84.9 9.0 66 360-432 81-150 (254)
81 TIGR03346 chaperone_ClpB ATP-d 98.3 1.6E-06 3.6E-11 98.9 9.6 92 353-458 168-272 (852)
82 PRK09183 transposase/IS protei 98.3 5.3E-07 1.1E-11 89.0 4.7 41 387-430 102-145 (259)
83 PF07724 AAA_2: AAA domain (Cd 98.3 1.9E-07 4.1E-12 86.6 1.2 65 386-453 2-82 (171)
84 PLN03025 replication factor C 98.3 6.8E-07 1.5E-11 90.7 5.1 51 353-411 8-58 (319)
85 PF01078 Mg_chelatase: Magnesi 98.3 6.9E-07 1.5E-11 84.9 4.7 46 356-411 1-46 (206)
86 PRK08116 hypothetical protein; 98.3 3.4E-06 7.3E-11 83.8 9.7 40 388-430 115-157 (268)
87 PRK06620 hypothetical protein; 98.3 1.2E-06 2.7E-11 84.0 6.0 63 351-415 9-72 (214)
88 PRK06893 DNA replication initi 98.3 6.7E-07 1.5E-11 86.5 4.0 55 351-411 9-63 (229)
89 PHA02544 44 clamp loader, smal 98.3 1.2E-06 2.6E-11 88.3 5.9 61 354-421 17-77 (316)
90 KOG2028 ATPase related to the 98.2 4.7E-07 1E-11 91.5 2.6 57 353-414 133-189 (554)
91 PF06068 TIP49: TIP49 C-termin 98.2 2.3E-06 5E-11 87.4 7.6 71 356-432 22-94 (398)
92 PRK00149 dnaA chromosomal repl 98.2 3.7E-06 8.1E-11 89.3 9.5 75 351-431 115-194 (450)
93 PRK14088 dnaA chromosomal repl 98.2 4.5E-06 9.8E-11 88.5 9.9 73 351-430 98-175 (440)
94 PF01695 IstB_IS21: IstB-like 98.2 1.2E-06 2.6E-11 81.7 4.9 42 387-431 47-91 (178)
95 PRK11034 clpA ATP-dependent Cl 98.2 2.7E-06 5.8E-11 95.5 8.5 91 354-458 182-284 (758)
96 PRK07952 DNA replication prote 98.2 4.5E-06 9.7E-11 81.7 9.0 43 387-432 99-144 (244)
97 PRK14961 DNA polymerase III su 98.2 1.4E-06 3E-11 90.1 5.6 53 354-413 12-64 (363)
98 TIGR03345 VI_ClpV1 type VI sec 98.2 2.4E-06 5.2E-11 97.3 7.9 92 353-458 182-286 (852)
99 PRK08939 primosomal protein Dn 98.2 2.5E-06 5.5E-11 86.2 7.1 42 386-430 155-199 (306)
100 cd00009 AAA The AAA+ (ATPases 98.2 2.9E-06 6.2E-11 73.4 6.6 34 386-419 18-54 (151)
101 PRK08903 DnaA regulatory inact 98.2 5.5E-06 1.2E-10 79.6 9.1 61 352-419 12-77 (227)
102 TIGR00362 DnaA chromosomal rep 98.2 6.7E-06 1.4E-10 86.2 10.0 74 352-431 104-182 (405)
103 KOG0991 Replication factor C, 98.2 1.3E-06 2.9E-11 83.7 4.1 55 355-417 24-79 (333)
104 PRK13341 recombination factor 98.2 1.5E-06 3.4E-11 96.9 5.1 61 354-419 24-84 (725)
105 PRK08084 DNA replication initi 98.2 1.2E-06 2.6E-11 85.2 3.7 54 353-412 17-70 (235)
106 COG0606 Predicted ATPase with 98.2 1.1E-06 2.5E-11 91.9 3.5 48 354-411 175-222 (490)
107 TIGR03420 DnaA_homol_Hda DnaA 98.2 1.2E-06 2.6E-11 83.6 3.4 61 353-419 10-73 (226)
108 PRK12377 putative replication 98.2 3.4E-06 7.4E-11 82.8 6.5 39 387-428 101-142 (248)
109 PRK14956 DNA polymerase III su 98.2 2E-06 4.4E-11 91.2 5.2 54 353-413 13-66 (484)
110 PRK14958 DNA polymerase III su 98.1 2.6E-06 5.6E-11 91.8 5.6 54 353-413 11-64 (509)
111 PRK14955 DNA polymerase III su 98.1 2.9E-06 6.2E-11 88.8 5.6 53 354-413 12-64 (397)
112 PRK12402 replication factor C 98.1 2.9E-06 6.3E-11 85.9 5.5 51 354-412 11-61 (337)
113 PRK14970 DNA polymerase III su 98.1 4.3E-06 9.4E-11 86.3 6.7 54 353-413 12-65 (367)
114 COG1224 TIP49 DNA helicase TIP 98.1 3.9E-06 8.5E-11 84.9 6.0 69 358-432 39-109 (450)
115 KOG0736 Peroxisome assembly fa 98.1 3.4E-06 7.4E-11 92.1 5.7 65 388-458 432-496 (953)
116 PRK14964 DNA polymerase III su 98.1 3.1E-06 6.8E-11 90.4 5.3 52 354-412 9-60 (491)
117 PRK14960 DNA polymerase III su 98.1 3.2E-06 7E-11 92.4 5.2 53 354-413 11-63 (702)
118 PRK06645 DNA polymerase III su 98.1 3.8E-06 8.2E-11 90.3 5.4 54 353-413 16-69 (507)
119 PRK14086 dnaA chromosomal repl 98.1 1E-05 2.2E-10 88.2 8.6 75 352-432 282-361 (617)
120 PRK14963 DNA polymerase III su 98.1 3.5E-06 7.6E-11 90.6 4.9 53 354-413 10-62 (504)
121 PRK07940 DNA polymerase III su 98.1 4.2E-06 9E-11 87.4 5.3 60 355-414 2-63 (394)
122 PRK14949 DNA polymerase III su 98.1 4E-06 8.8E-11 94.2 5.5 54 354-414 12-65 (944)
123 PF07728 AAA_5: AAA domain (dy 98.1 3.4E-06 7.4E-11 74.6 3.8 31 389-419 1-31 (139)
124 TIGR02640 gas_vesic_GvpN gas v 98.0 8.1E-06 1.8E-10 80.7 6.8 32 388-419 22-53 (262)
125 PRK12422 chromosomal replicati 98.0 1.6E-05 3.5E-10 84.3 9.1 68 352-419 105-176 (445)
126 smart00763 AAA_PrkA PrkA AAA d 98.0 9.8E-06 2.1E-10 83.2 7.1 62 356-420 48-118 (361)
127 COG1220 HslU ATP-dependent pro 98.0 1.4E-05 3E-10 80.5 7.7 71 360-432 17-93 (444)
128 PRK14957 DNA polymerase III su 98.0 5.6E-06 1.2E-10 89.6 5.4 53 354-413 12-64 (546)
129 PRK08691 DNA polymerase III su 98.0 5.3E-06 1.2E-10 91.3 5.1 55 353-414 11-65 (709)
130 PRK14969 DNA polymerase III su 98.0 5.8E-06 1.3E-10 89.5 5.2 53 354-413 12-64 (527)
131 PRK05642 DNA replication initi 98.0 4E-05 8.6E-10 74.5 9.9 65 352-419 13-80 (234)
132 PRK14952 DNA polymerase III su 98.0 8E-06 1.7E-10 89.2 5.3 53 354-413 9-61 (584)
133 PHA02244 ATPase-like protein 98.0 1.7E-05 3.6E-10 81.7 7.3 33 388-420 120-152 (383)
134 PRK05896 DNA polymerase III su 98.0 8.8E-06 1.9E-10 88.6 5.5 52 354-412 12-63 (605)
135 TIGR02397 dnaX_nterm DNA polym 97.9 1.1E-05 2.4E-10 82.4 5.8 53 353-412 9-61 (355)
136 PRK12323 DNA polymerase III su 97.9 9.2E-06 2E-10 88.8 5.2 54 353-413 11-64 (700)
137 TIGR00764 lon_rel lon-related 97.9 1.7E-05 3.6E-10 87.4 7.3 88 354-454 14-108 (608)
138 PRK14951 DNA polymerase III su 97.9 1E-05 2.2E-10 88.8 5.5 53 354-413 12-64 (618)
139 PRK08727 hypothetical protein; 97.9 6E-06 1.3E-10 80.2 3.2 52 352-411 13-65 (233)
140 PRK05563 DNA polymerase III su 97.9 1.1E-05 2.4E-10 88.0 5.6 52 354-412 12-63 (559)
141 PRK06305 DNA polymerase III su 97.9 1.2E-05 2.5E-10 85.6 5.5 53 354-413 13-65 (451)
142 PRK07003 DNA polymerase III su 97.9 1E-05 2.3E-10 89.5 5.0 54 353-413 11-64 (830)
143 PRK06835 DNA replication prote 97.9 1.7E-05 3.6E-10 81.0 6.0 40 388-430 184-226 (329)
144 PRK14954 DNA polymerase III su 97.9 1.2E-05 2.7E-10 88.3 5.4 53 354-413 12-64 (620)
145 PRK07994 DNA polymerase III su 97.9 1.3E-05 2.7E-10 88.4 5.2 54 354-414 12-65 (647)
146 PF13207 AAA_17: AAA domain; P 97.9 1.1E-05 2.3E-10 69.4 3.8 31 390-420 2-32 (121)
147 PRK07133 DNA polymerase III su 97.9 1.3E-05 2.7E-10 89.1 5.2 54 353-413 13-66 (725)
148 PRK14950 DNA polymerase III su 97.9 1.4E-05 3.1E-10 87.6 5.6 53 354-413 12-64 (585)
149 PF00308 Bac_DnaA: Bacterial d 97.9 5.7E-05 1.2E-09 72.7 9.0 56 353-411 3-58 (219)
150 PRK09111 DNA polymerase III su 97.9 1.5E-05 3.2E-10 87.5 5.4 54 354-414 20-73 (598)
151 TIGR01650 PD_CobS cobaltochela 97.9 1E-05 2.2E-10 82.1 3.8 33 387-419 64-96 (327)
152 PF05673 DUF815: Protein of un 97.9 1.6E-05 3.4E-10 77.4 4.8 61 353-417 22-82 (249)
153 PRK14965 DNA polymerase III su 97.9 1.6E-05 3.6E-10 87.0 5.5 53 354-413 12-64 (576)
154 PRK06647 DNA polymerase III su 97.8 1.7E-05 3.7E-10 86.5 5.3 53 354-413 12-64 (563)
155 PF07726 AAA_3: ATPase family 97.8 9E-06 1.9E-10 71.7 2.4 31 389-419 1-31 (131)
156 PRK14959 DNA polymerase III su 97.8 1.9E-05 4.1E-10 86.4 5.2 54 353-413 11-64 (624)
157 PRK13407 bchI magnesium chelat 97.8 1.6E-05 3.4E-10 81.4 4.1 51 353-411 3-53 (334)
158 PRK00131 aroK shikimate kinase 97.8 1.9E-05 4.2E-10 71.8 4.2 33 386-418 3-35 (175)
159 PRK07764 DNA polymerase III su 97.8 2.4E-05 5.2E-10 88.6 5.4 54 353-413 10-63 (824)
160 PRK06921 hypothetical protein; 97.8 4.4E-05 9.5E-10 75.7 6.7 33 387-419 117-153 (266)
161 PRK14087 dnaA chromosomal repl 97.8 7.4E-05 1.6E-09 79.5 8.9 73 354-432 111-188 (450)
162 PRK00440 rfc replication facto 97.8 3E-05 6.4E-10 77.8 5.4 50 355-412 14-63 (319)
163 KOG0745 Putative ATP-dependent 97.8 2.9E-05 6.4E-10 80.3 5.4 44 388-434 227-271 (564)
164 PRK11331 5-methylcytosine-spec 97.8 4.8E-05 1E-09 80.2 7.0 27 387-413 194-220 (459)
165 PRK14953 DNA polymerase III su 97.8 2.8E-05 6E-10 83.5 5.3 54 353-413 11-64 (486)
166 PRK14948 DNA polymerase III su 97.8 3.1E-05 6.7E-10 85.4 5.7 54 353-413 11-64 (620)
167 TIGR02928 orc1/cdc6 family rep 97.8 0.00016 3.5E-09 74.2 10.6 51 358-412 15-65 (365)
168 PRK08451 DNA polymerase III su 97.7 3.2E-05 7E-10 83.5 5.5 52 354-412 10-61 (535)
169 PRK00411 cdc6 cell division co 97.7 0.00017 3.6E-09 74.9 10.4 35 385-419 53-92 (394)
170 KOG1942 DNA helicase, TBP-inte 97.7 5.5E-05 1.2E-09 74.9 6.0 69 358-432 38-108 (456)
171 PF13671 AAA_33: AAA domain; P 97.7 7.2E-05 1.6E-09 65.9 6.2 23 390-412 2-24 (143)
172 PHA00729 NTP-binding motif con 97.7 2.3E-05 4.9E-10 75.7 3.1 26 387-412 17-42 (226)
173 PF06309 Torsin: Torsin; Inte 97.7 0.00018 3.8E-09 63.3 8.1 49 360-411 27-77 (127)
174 PF00910 RNA_helicase: RNA hel 97.7 3.3E-05 7.1E-10 65.8 3.4 43 390-432 1-49 (107)
175 COG0464 SpoVK ATPases of the A 97.6 7.1E-05 1.5E-09 80.5 6.2 69 383-458 14-82 (494)
176 PRK09087 hypothetical protein; 97.6 7.8E-05 1.7E-09 72.2 5.8 61 352-418 15-75 (226)
177 KOG0735 AAA+-type ATPase [Post 97.6 8.3E-05 1.8E-09 81.0 6.4 91 358-458 408-500 (952)
178 PF03215 Rad17: Rad17 cell cyc 97.6 8.2E-05 1.8E-09 80.3 6.4 62 355-419 16-77 (519)
179 PRK13947 shikimate kinase; Pro 97.6 5.5E-05 1.2E-09 69.2 3.8 31 388-418 2-32 (171)
180 PRK08118 topology modulation p 97.6 5.4E-05 1.2E-09 69.8 3.7 32 388-419 2-33 (167)
181 PRK13531 regulatory ATPase Rav 97.6 9.3E-05 2E-09 78.7 5.6 44 360-413 22-65 (498)
182 cd00464 SK Shikimate kinase (S 97.6 6.2E-05 1.3E-09 67.2 3.6 31 389-419 1-31 (154)
183 PRK14532 adenylate kinase; Pro 97.5 6.3E-05 1.4E-09 70.1 3.6 30 389-418 2-31 (188)
184 TIGR02902 spore_lonB ATP-depen 97.5 0.00011 2.4E-09 79.8 6.0 51 353-411 60-110 (531)
185 PRK00625 shikimate kinase; Pro 97.5 7.1E-05 1.5E-09 69.6 3.7 31 389-419 2-32 (173)
186 COG0470 HolB ATPase involved i 97.5 0.00017 3.6E-09 72.4 6.5 24 389-412 26-49 (325)
187 KOG3347 Predicted nucleotide k 97.5 5.3E-05 1.1E-09 68.2 2.5 32 388-419 8-39 (176)
188 COG0714 MoxR-like ATPases [Gen 97.5 7.3E-05 1.6E-09 76.2 3.9 32 388-419 44-75 (329)
189 PRK08154 anaerobic benzoate ca 97.5 0.00038 8.1E-09 70.6 8.9 56 364-419 110-165 (309)
190 PRK03839 putative kinase; Prov 97.5 8.4E-05 1.8E-09 68.8 3.6 31 389-419 2-32 (180)
191 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 8.9E-05 1.9E-09 68.5 3.7 29 390-418 2-30 (183)
192 KOG1969 DNA replication checkp 97.5 0.00014 3.1E-09 79.5 5.4 67 356-422 269-361 (877)
193 KOG0741 AAA+-type ATPase [Post 97.5 0.00016 3.6E-09 76.5 5.7 69 384-457 535-603 (744)
194 COG0703 AroK Shikimate kinase 97.5 0.00015 3.3E-09 67.0 4.9 32 388-419 3-34 (172)
195 PRK14971 DNA polymerase III su 97.4 0.00014 3.1E-09 80.1 5.5 52 354-412 13-64 (614)
196 TIGR00602 rad24 checkpoint pro 97.4 0.00011 2.5E-09 80.9 4.6 62 353-417 79-140 (637)
197 PRK14531 adenylate kinase; Pro 97.4 0.00011 2.3E-09 68.5 3.8 31 388-418 3-33 (183)
198 PRK05564 DNA polymerase III su 97.4 0.00018 3.8E-09 72.9 5.3 50 356-412 2-51 (313)
199 CHL00081 chlI Mg-protoporyphyr 97.4 0.00012 2.6E-09 75.3 3.9 53 352-412 11-63 (350)
200 PRK13949 shikimate kinase; Pro 97.4 0.00012 2.6E-09 67.6 3.6 32 388-419 2-33 (169)
201 cd01428 ADK Adenylate kinase ( 97.4 0.00013 2.8E-09 67.9 3.7 30 389-418 1-30 (194)
202 TIGR02903 spore_lon_C ATP-depe 97.4 0.00024 5.1E-09 78.5 6.1 50 354-411 150-199 (615)
203 PRK07471 DNA polymerase III su 97.4 0.00024 5.1E-09 73.7 5.6 53 353-412 14-66 (365)
204 PTZ00121 MAEBL; Provisional 97.4 0.042 9.2E-07 64.1 23.3 21 391-411 1961-1982(2084)
205 PRK13948 shikimate kinase; Pro 97.3 0.0002 4.3E-09 67.1 4.2 35 385-419 8-42 (182)
206 PRK15455 PrkA family serine pr 97.3 0.00029 6.3E-09 76.2 5.9 61 356-419 74-136 (644)
207 PRK14528 adenylate kinase; Pro 97.3 0.00018 3.8E-09 67.4 3.7 31 388-418 2-32 (186)
208 cd02020 CMPK Cytidine monophos 97.3 0.00018 3.9E-09 63.5 3.6 30 390-419 2-31 (147)
209 PRK13765 ATP-dependent proteas 97.3 0.00024 5.3E-09 78.4 5.2 52 353-414 26-77 (637)
210 COG0593 DnaA ATPase involved i 97.3 0.00034 7.3E-09 73.1 5.9 59 351-412 80-138 (408)
211 PRK14530 adenylate kinase; Pro 97.3 0.00019 4E-09 68.6 3.8 30 389-418 5-34 (215)
212 PRK07399 DNA polymerase III su 97.3 0.0003 6.5E-09 71.5 5.4 50 356-412 2-51 (314)
213 TIGR02442 Cob-chelat-sub cobal 97.3 0.00025 5.5E-09 78.6 4.9 48 356-411 2-49 (633)
214 PLN02200 adenylate kinase fami 97.3 0.00026 5.7E-09 68.9 4.4 33 386-418 42-74 (234)
215 cd00227 CPT Chloramphenicol (C 97.3 0.0002 4.4E-09 66.1 3.5 32 388-419 3-34 (175)
216 TIGR01313 therm_gnt_kin carboh 97.3 0.00021 4.6E-09 64.8 3.5 28 390-417 1-28 (163)
217 PRK07261 topology modulation p 97.2 0.00025 5.4E-09 65.6 3.6 31 389-419 2-32 (171)
218 PRK13946 shikimate kinase; Pro 97.2 0.00026 5.7E-09 66.1 3.8 33 387-419 10-42 (184)
219 PRK06217 hypothetical protein; 97.2 0.00027 5.8E-09 65.8 3.8 31 389-419 3-33 (183)
220 COG1936 Predicted nucleotide k 97.2 0.00022 4.7E-09 65.8 3.0 30 389-419 2-31 (180)
221 PRK09112 DNA polymerase III su 97.2 0.00043 9.4E-09 71.4 5.4 53 354-413 19-71 (351)
222 COG1102 Cmk Cytidylate kinase 97.2 0.00026 5.7E-09 64.6 3.3 28 390-417 3-30 (179)
223 cd02021 GntK Gluconate kinase 97.2 0.00029 6.3E-09 63.0 3.5 28 390-417 2-29 (150)
224 PRK03731 aroL shikimate kinase 97.2 0.00036 7.8E-09 63.9 3.9 32 388-419 3-34 (171)
225 PF00158 Sigma54_activat: Sigm 97.2 0.00091 2E-08 61.8 6.5 33 387-419 22-57 (168)
226 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00034 7.3E-09 64.6 3.7 30 389-418 5-34 (188)
227 TIGR01351 adk adenylate kinase 97.2 0.00033 7.1E-09 66.7 3.6 30 389-418 1-30 (210)
228 PRK02496 adk adenylate kinase; 97.1 0.00034 7.5E-09 64.9 3.6 30 389-418 3-32 (184)
229 PRK05057 aroK shikimate kinase 97.1 0.0004 8.6E-09 64.3 3.9 33 387-419 4-36 (172)
230 KOG2170 ATPase of the AAA+ sup 97.1 0.00035 7.5E-09 69.6 3.6 49 360-411 84-134 (344)
231 PTZ00088 adenylate kinase 1; P 97.1 0.00037 8.1E-09 67.7 3.7 31 389-419 8-38 (229)
232 PRK06762 hypothetical protein; 97.1 0.00046 9.9E-09 62.9 4.0 32 388-419 3-34 (166)
233 PHA02624 large T antigen; Prov 97.1 0.0007 1.5E-08 73.6 5.7 32 388-419 432-463 (647)
234 PRK00279 adk adenylate kinase; 97.1 0.00044 9.6E-09 66.0 3.7 30 389-418 2-31 (215)
235 PF13401 AAA_22: AAA domain; P 97.1 0.00049 1.1E-08 59.6 3.6 24 388-411 5-28 (131)
236 TIGR01817 nifA Nif-specific re 97.1 0.00096 2.1E-08 72.5 6.7 62 352-419 190-254 (534)
237 PRK04040 adenylate kinase; Pro 97.1 0.00049 1.1E-08 64.8 3.7 30 387-416 2-33 (188)
238 TIGR01618 phage_P_loop phage n 97.1 0.00042 9.1E-09 66.9 3.4 22 388-409 13-34 (220)
239 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0011 2.5E-08 64.6 6.5 30 390-419 2-34 (249)
240 KOG0990 Replication factor C, 97.1 0.00035 7.5E-09 70.1 2.8 53 353-413 36-88 (360)
241 PF13191 AAA_16: AAA ATPase do 97.0 0.00062 1.3E-08 62.3 4.3 30 385-414 22-51 (185)
242 TIGR02688 conserved hypothetic 97.0 0.00068 1.5E-08 71.0 4.9 37 369-410 195-232 (449)
243 PRK06547 hypothetical protein; 97.0 0.00082 1.8E-08 62.4 4.9 35 385-419 13-47 (172)
244 PF13245 AAA_19: Part of AAA d 97.0 0.00079 1.7E-08 54.0 4.1 31 389-419 12-49 (76)
245 PRK14527 adenylate kinase; Pro 97.0 0.00049 1.1E-08 64.5 3.3 32 387-418 6-37 (191)
246 PLN02674 adenylate kinase 97.0 0.00058 1.3E-08 66.9 3.8 33 385-417 29-61 (244)
247 COG0563 Adk Adenylate kinase a 97.0 0.00057 1.2E-08 63.8 3.5 28 389-416 2-29 (178)
248 COG1474 CDC6 Cdc6-related prot 97.0 0.0011 2.4E-08 68.7 5.9 46 368-414 24-69 (366)
249 PF01745 IPT: Isopentenyl tran 97.0 0.00072 1.6E-08 64.6 4.0 35 389-423 3-37 (233)
250 PTZ00112 origin recognition co 97.0 0.0031 6.8E-08 71.1 9.4 23 389-411 783-805 (1164)
251 PF13086 AAA_11: AAA domain; P 97.0 0.00052 1.1E-08 64.7 3.0 22 390-411 20-41 (236)
252 TIGR02030 BchI-ChlI magnesium 97.0 0.00074 1.6E-08 69.3 4.3 48 356-411 2-49 (337)
253 PF00406 ADK: Adenylate kinase 96.9 0.00059 1.3E-08 61.3 3.0 26 392-417 1-26 (151)
254 PRK08058 DNA polymerase III su 96.9 0.00088 1.9E-08 68.5 4.5 49 357-412 4-53 (329)
255 PHA02774 E1; Provisional 96.9 0.0014 3.1E-08 71.0 6.0 31 384-414 430-461 (613)
256 PRK14526 adenylate kinase; Pro 96.9 0.00077 1.7E-08 64.6 3.6 29 389-417 2-30 (211)
257 PF13238 AAA_18: AAA domain; P 96.9 0.0007 1.5E-08 58.1 2.9 23 390-412 1-23 (129)
258 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0018 3.9E-08 57.6 5.5 29 386-414 21-49 (133)
259 COG2812 DnaX DNA polymerase II 96.9 0.00071 1.5E-08 72.7 3.5 54 354-414 12-65 (515)
260 TIGR00368 Mg chelatase-related 96.9 0.00074 1.6E-08 72.8 3.5 47 355-411 189-235 (499)
261 cd01120 RecA-like_NTPases RecA 96.9 0.001 2.2E-08 59.0 3.9 22 390-411 2-23 (165)
262 PRK15424 propionate catabolism 96.8 0.0017 3.7E-08 70.6 6.0 59 355-419 216-285 (538)
263 KOG1970 Checkpoint RAD17-RFC c 96.8 0.0015 3.2E-08 69.8 5.2 35 385-419 108-142 (634)
264 cd01124 KaiC KaiC is a circadi 96.8 0.0016 3.5E-08 60.0 4.8 31 389-419 1-34 (187)
265 PRK12339 2-phosphoglycerate ki 96.8 0.0024 5.1E-08 60.7 6.0 29 388-416 4-32 (197)
266 PLN02459 probable adenylate ki 96.8 0.0011 2.4E-08 65.5 3.7 30 389-418 31-60 (261)
267 PRK04182 cytidylate kinase; Pr 96.8 0.0011 2.5E-08 60.5 3.5 29 389-417 2-30 (180)
268 cd02019 NK Nucleoside/nucleoti 96.8 0.0017 3.6E-08 50.8 3.9 30 390-419 2-32 (69)
269 PF14532 Sigma54_activ_2: Sigm 96.7 0.0019 4E-08 57.3 4.6 27 387-413 21-47 (138)
270 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0012 2.6E-08 59.9 3.5 29 390-418 3-31 (171)
271 TIGR02237 recomb_radB DNA repa 96.7 0.0042 9.1E-08 58.7 7.3 32 388-419 13-47 (209)
272 PRK05541 adenylylsulfate kinas 96.7 0.0012 2.5E-08 60.9 3.4 28 386-413 6-33 (176)
273 PRK06696 uridine kinase; Valid 96.7 0.0031 6.8E-08 60.6 6.4 33 387-419 22-57 (223)
274 PRK14529 adenylate kinase; Pro 96.7 0.0011 2.4E-08 64.1 3.2 29 389-417 2-30 (223)
275 PRK15429 formate hydrogenlyase 96.7 0.0019 4E-08 72.5 5.5 59 355-419 373-434 (686)
276 TIGR00678 holB DNA polymerase 96.7 0.0017 3.8E-08 60.4 4.3 27 386-412 13-39 (188)
277 PRK01184 hypothetical protein; 96.7 0.0014 3E-08 60.8 3.6 29 389-418 3-31 (184)
278 TIGR03015 pepcterm_ATPase puta 96.7 0.0034 7.4E-08 61.4 6.6 25 388-412 44-68 (269)
279 COG0542 clpA ATP-binding subun 96.7 0.0029 6.4E-08 70.8 6.6 93 354-458 166-268 (786)
280 cd02027 APSK Adenosine 5'-phos 96.7 0.0016 3.6E-08 58.7 3.7 30 390-419 2-34 (149)
281 COG2607 Predicted ATPase (AAA+ 96.7 0.0022 4.8E-08 62.2 4.8 67 353-423 55-124 (287)
282 PF13521 AAA_28: AAA domain; P 96.7 0.0012 2.6E-08 60.0 2.9 26 390-416 2-27 (163)
283 PHA02530 pseT polynucleotide k 96.6 0.0015 3.3E-08 65.3 3.6 27 388-414 3-30 (300)
284 PRK10078 ribose 1,5-bisphospho 96.6 0.0016 3.4E-08 60.8 3.3 30 388-417 3-32 (186)
285 PF13173 AAA_14: AAA domain 96.6 0.0043 9.3E-08 54.3 5.9 32 388-419 3-36 (128)
286 TIGR02329 propionate_PrpR prop 96.6 0.0032 6.9E-08 68.4 5.9 60 354-419 208-270 (526)
287 PRK13808 adenylate kinase; Pro 96.6 0.0017 3.6E-08 66.4 3.5 30 389-418 2-31 (333)
288 PRK11608 pspF phage shock prot 96.6 0.004 8.6E-08 63.6 6.2 56 357-419 5-64 (326)
289 PRK10820 DNA-binding transcrip 96.5 0.0041 8.9E-08 67.5 6.4 60 353-419 199-262 (520)
290 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0072 1.6E-07 57.0 6.8 39 385-423 13-52 (199)
291 PRK08233 hypothetical protein; 96.5 0.0021 4.5E-08 59.0 3.0 24 389-412 5-28 (182)
292 PLN02199 shikimate kinase 96.4 0.0027 5.9E-08 63.7 4.0 33 387-419 102-134 (303)
293 PF13177 DNA_pol3_delta2: DNA 96.4 0.0042 9E-08 57.0 5.0 26 387-412 19-44 (162)
294 PTZ00121 MAEBL; Provisional 96.4 0.44 9.6E-06 56.1 21.7 11 148-158 1175-1185(2084)
295 PRK11388 DNA-binding transcrip 96.4 0.005 1.1E-07 68.4 6.3 59 355-419 322-383 (638)
296 PF05729 NACHT: NACHT domain 96.4 0.0024 5.2E-08 57.0 3.1 23 389-411 2-24 (166)
297 PRK10536 hypothetical protein; 96.4 0.0048 1.1E-07 60.8 5.4 44 389-432 76-125 (262)
298 PF12775 AAA_7: P-loop contain 96.4 0.0046 9.9E-08 61.6 5.2 27 387-413 33-59 (272)
299 TIGR02322 phosphon_PhnN phosph 96.4 0.0027 5.8E-08 58.5 3.2 25 389-413 3-27 (179)
300 PF00437 T2SE: Type II/IV secr 96.4 0.0034 7.3E-08 61.9 4.1 60 354-419 100-160 (270)
301 PF03266 NTPase_1: NTPase; In 96.4 0.003 6.4E-08 58.4 3.4 23 389-411 1-23 (168)
302 TIGR01526 nadR_NMN_Atrans nico 96.4 0.0067 1.5E-07 62.0 6.3 32 388-419 163-194 (325)
303 PRK05022 anaerobic nitric oxid 96.3 0.0059 1.3E-07 66.1 6.2 58 356-419 185-245 (509)
304 PRK13764 ATPase; Provisional 96.3 0.0055 1.2E-07 67.3 5.7 31 387-417 257-287 (602)
305 PRK09825 idnK D-gluconate kina 96.3 0.0037 8E-08 58.1 3.8 28 388-415 4-31 (176)
306 PRK06067 flagellar accessory p 96.3 0.012 2.6E-07 56.7 7.5 33 387-419 25-60 (234)
307 PRK12338 hypothetical protein; 96.3 0.0035 7.6E-08 63.7 3.8 30 387-416 4-33 (319)
308 PRK04220 2-phosphoglycerate ki 96.3 0.0036 7.8E-08 63.0 3.8 29 388-416 93-121 (301)
309 PRK00889 adenylylsulfate kinas 96.3 0.0049 1.1E-07 56.7 4.4 26 387-412 4-29 (175)
310 PRK00300 gmk guanylate kinase; 96.3 0.0038 8.2E-08 58.8 3.7 27 386-412 4-30 (205)
311 COG1855 ATPase (PilT family) [ 96.3 0.0049 1.1E-07 64.6 4.7 50 355-417 244-293 (604)
312 PRK14021 bifunctional shikimat 96.2 0.0067 1.4E-07 66.2 6.0 32 388-419 7-38 (542)
313 PRK08356 hypothetical protein; 96.2 0.0042 9.1E-08 58.4 3.8 30 388-418 6-35 (195)
314 TIGR02974 phageshock_pspF psp 96.2 0.0082 1.8E-07 61.4 6.2 32 388-419 23-57 (329)
315 COG4088 Predicted nucleotide k 96.2 0.0031 6.8E-08 60.0 2.7 24 389-412 3-26 (261)
316 cd01130 VirB11-like_ATPase Typ 96.2 0.0041 8.8E-08 58.1 3.5 27 387-413 25-51 (186)
317 PF12774 AAA_6: Hydrolytic ATP 96.2 0.0081 1.8E-07 58.4 5.6 53 360-419 12-64 (231)
318 KOG3354 Gluconate kinase [Carb 96.2 0.0059 1.3E-07 55.6 4.1 37 384-420 8-45 (191)
319 PF12780 AAA_8: P-loop contain 96.2 0.016 3.5E-07 57.6 7.6 54 360-419 10-63 (268)
320 TIGR03499 FlhF flagellar biosy 96.1 0.0064 1.4E-07 60.8 4.8 33 387-419 194-231 (282)
321 KOG1029 Endocytic adaptor prot 96.1 1.1 2.3E-05 50.0 21.5 19 143-161 363-381 (1118)
322 cd00046 DEXDc DEAD-like helica 96.1 0.0046 9.9E-08 52.5 3.1 25 388-412 1-25 (144)
323 PRK13833 conjugal transfer pro 96.1 0.0053 1.1E-07 62.6 4.0 25 387-411 144-168 (323)
324 PF13479 AAA_24: AAA domain 96.1 0.0018 3.9E-08 61.9 0.6 19 389-407 5-23 (213)
325 PF03969 AFG1_ATPase: AFG1-lik 96.1 0.015 3.4E-07 60.2 7.3 48 383-432 58-105 (362)
326 PRK11545 gntK gluconate kinase 96.1 0.0043 9.3E-08 56.9 2.9 25 393-417 1-25 (163)
327 COG3854 SpoIIIAA ncharacterize 96.1 0.01 2.2E-07 57.5 5.4 30 385-414 135-164 (308)
328 PF01583 APS_kinase: Adenylyls 96.1 0.013 2.7E-07 53.7 5.9 31 389-419 4-37 (156)
329 PRK11823 DNA repair protein Ra 96.0 0.014 3.1E-07 62.1 7.2 35 385-419 78-115 (446)
330 TIGR03877 thermo_KaiC_1 KaiC d 96.0 0.0089 1.9E-07 58.0 5.2 35 385-419 19-56 (237)
331 PRK09270 nucleoside triphospha 96.0 0.012 2.7E-07 56.7 6.0 45 369-413 15-59 (229)
332 TIGR03263 guanyl_kin guanylate 96.0 0.0041 8.9E-08 57.2 2.6 24 389-412 3-26 (180)
333 PLN02165 adenylate isopentenyl 96.0 0.006 1.3E-07 62.3 3.9 31 387-417 43-73 (334)
334 PRK14722 flhF flagellar biosyn 96.0 0.0066 1.4E-07 63.1 4.2 25 387-411 137-161 (374)
335 PF05621 TniB: Bacterial TniB 96.0 0.012 2.6E-07 59.2 5.9 50 360-411 36-85 (302)
336 PRK09862 putative ATP-dependen 96.0 0.0055 1.2E-07 66.1 3.5 47 355-411 188-234 (506)
337 PF04851 ResIII: Type III rest 95.9 0.014 3.1E-07 52.8 5.8 51 365-419 7-57 (184)
338 PF06745 KaiC: KaiC; InterPro 95.9 0.0098 2.1E-07 57.0 4.9 35 386-420 18-56 (226)
339 cd01672 TMPK Thymidine monopho 95.9 0.0096 2.1E-07 55.0 4.7 30 390-419 3-35 (200)
340 PRK13975 thymidylate kinase; P 95.9 0.0081 1.8E-07 56.0 4.2 27 389-415 4-30 (196)
341 TIGR00455 apsK adenylylsulfate 95.9 0.02 4.4E-07 53.0 6.7 29 384-412 15-43 (184)
342 PF00485 PRK: Phosphoribulokin 95.9 0.0058 1.2E-07 57.4 3.0 23 390-412 2-24 (194)
343 PRK05480 uridine/cytidine kina 95.9 0.0085 1.8E-07 56.8 4.2 26 387-412 6-31 (209)
344 COG0467 RAD55 RecA-superfamily 95.9 0.011 2.3E-07 58.2 5.0 35 387-421 23-60 (260)
345 TIGR00017 cmk cytidylate kinas 95.9 0.0068 1.5E-07 58.3 3.5 29 389-417 4-32 (217)
346 PF01202 SKI: Shikimate kinase 95.9 0.012 2.6E-07 53.5 4.9 24 396-419 1-24 (158)
347 PRK08099 bifunctional DNA-bind 95.9 0.0067 1.5E-07 63.7 3.7 31 387-417 219-249 (399)
348 PRK14730 coaE dephospho-CoA ki 95.9 0.012 2.6E-07 55.6 5.1 30 389-418 3-32 (195)
349 COG1221 PspF Transcriptional r 95.9 0.014 3E-07 61.0 5.9 66 353-428 73-143 (403)
350 PRK13851 type IV secretion sys 95.9 0.0062 1.3E-07 62.7 3.2 34 386-419 161-194 (344)
351 cd02028 UMPK_like Uridine mono 95.8 0.0083 1.8E-07 55.9 3.7 23 390-412 2-24 (179)
352 cd00071 GMPK Guanosine monopho 95.8 0.0074 1.6E-07 53.7 3.2 24 390-413 2-25 (137)
353 COG3829 RocR Transcriptional r 95.8 0.016 3.5E-07 62.2 6.2 62 352-419 239-303 (560)
354 cd02022 DPCK Dephospho-coenzym 95.8 0.0081 1.8E-07 55.7 3.6 28 390-418 2-29 (179)
355 PRK13951 bifunctional shikimat 95.8 0.0073 1.6E-07 65.0 3.7 31 389-419 2-32 (488)
356 PRK03846 adenylylsulfate kinas 95.8 0.023 4.9E-07 53.6 6.6 28 385-412 22-49 (198)
357 PRK05800 cobU adenosylcobinami 95.8 0.0079 1.7E-07 55.7 3.4 30 389-418 3-32 (170)
358 cd01394 radB RadB. The archaea 95.8 0.0098 2.1E-07 56.6 4.2 24 388-411 20-43 (218)
359 PRK00023 cmk cytidylate kinase 95.8 0.0073 1.6E-07 58.4 3.3 30 388-417 5-34 (225)
360 cd02024 NRK1 Nicotinamide ribo 95.8 0.0082 1.8E-07 56.6 3.5 29 390-418 2-31 (187)
361 COG1618 Predicted nucleotide k 95.8 0.0065 1.4E-07 55.7 2.7 26 389-414 7-32 (179)
362 TIGR00235 udk uridine kinase. 95.8 0.0072 1.6E-07 57.3 3.1 24 389-412 8-31 (207)
363 smart00350 MCM minichromosome 95.8 0.009 2E-07 64.7 4.2 24 389-412 238-261 (509)
364 PTZ00202 tuzin; Provisional 95.8 0.053 1.1E-06 57.5 9.5 59 356-419 260-318 (550)
365 PF00519 PPV_E1_C: Papillomavi 95.7 0.012 2.6E-07 61.0 4.8 34 384-417 258-292 (432)
366 cd03115 SRP The signal recogni 95.7 0.01 2.2E-07 54.4 3.9 30 390-419 3-35 (173)
367 cd02023 UMPK Uridine monophosp 95.7 0.0092 2E-07 56.0 3.7 22 390-411 2-23 (198)
368 PRK14737 gmk guanylate kinase; 95.7 0.0084 1.8E-07 56.3 3.2 26 386-411 3-28 (186)
369 PRK05973 replicative DNA helic 95.7 0.013 2.9E-07 57.2 4.6 35 385-419 62-99 (237)
370 TIGR02858 spore_III_AA stage I 95.7 0.015 3.2E-07 58.0 5.0 27 387-413 111-137 (270)
371 PRK06761 hypothetical protein; 95.6 0.01 2.2E-07 59.5 3.6 26 389-414 5-30 (282)
372 TIGR00376 DNA helicase, putati 95.6 0.0077 1.7E-07 66.9 3.0 32 388-419 174-208 (637)
373 COG0529 CysC Adenylylsulfate k 95.6 0.03 6.5E-07 52.2 6.3 48 385-432 21-71 (197)
374 PF00448 SRP54: SRP54-type pro 95.6 0.0088 1.9E-07 56.7 2.9 26 387-412 1-26 (196)
375 KOG2680 DNA helicase TIP49, TB 95.6 0.011 2.5E-07 59.1 3.8 65 358-428 40-106 (454)
376 PRK05707 DNA polymerase III su 95.6 0.012 2.6E-07 60.2 4.1 27 387-413 22-48 (328)
377 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.013 2.8E-07 56.2 4.1 35 385-419 18-55 (229)
378 PF00931 NB-ARC: NB-ARC domain 95.6 0.014 3.1E-07 57.4 4.5 26 385-410 17-42 (287)
379 PRK13894 conjugal transfer ATP 95.6 0.015 3.3E-07 59.2 4.7 25 387-411 148-172 (319)
380 PRK09518 bifunctional cytidyla 95.5 0.0099 2.2E-07 67.0 3.6 29 389-417 3-31 (712)
381 PRK12337 2-phosphoglycerate ki 95.5 0.011 2.5E-07 62.7 3.8 31 386-416 254-284 (475)
382 COG2074 2-phosphoglycerate kin 95.5 0.017 3.6E-07 56.6 4.6 61 387-448 89-151 (299)
383 PF02367 UPF0079: Uncharacteri 95.5 0.011 2.5E-07 51.9 3.1 29 387-415 15-43 (123)
384 cd03283 ABC_MutS-like MutS-lik 95.5 0.025 5.4E-07 53.7 5.7 22 388-409 26-47 (199)
385 PRK08533 flagellar accessory p 95.5 0.018 3.8E-07 55.9 4.8 33 387-419 24-59 (230)
386 cd01131 PilT Pilus retraction 95.5 0.01 2.2E-07 56.1 3.0 25 389-413 3-27 (198)
387 PRK13477 bifunctional pantoate 95.5 0.012 2.5E-07 63.7 3.8 29 388-416 285-313 (512)
388 PRK09361 radB DNA repair and r 95.5 0.014 3.1E-07 55.8 4.0 32 388-419 24-58 (225)
389 PF08433 KTI12: Chromatin asso 95.5 0.021 4.6E-07 56.9 5.3 31 389-419 3-36 (270)
390 PRK13900 type IV secretion sys 95.5 0.013 2.9E-07 60.0 3.9 33 387-419 160-192 (332)
391 cd01121 Sms Sms (bacterial rad 95.5 0.034 7.3E-07 57.9 7.0 35 385-419 80-117 (372)
392 PRK00091 miaA tRNA delta(2)-is 95.5 0.012 2.7E-07 59.6 3.6 29 388-416 5-33 (307)
393 PF01637 Arch_ATPase: Archaeal 95.5 0.015 3.3E-07 54.7 4.1 26 386-411 19-44 (234)
394 PRK07667 uridine kinase; Provi 95.5 0.01 2.2E-07 55.9 2.8 25 388-412 18-42 (193)
395 TIGR00152 dephospho-CoA kinase 95.4 0.023 4.9E-07 53.0 5.1 29 390-418 2-30 (188)
396 PRK14738 gmk guanylate kinase; 95.4 0.011 2.3E-07 56.3 2.9 24 387-410 13-36 (206)
397 TIGR03878 thermo_KaiC_2 KaiC d 95.4 0.012 2.6E-07 58.1 3.3 33 387-419 36-71 (259)
398 PF13604 AAA_30: AAA domain; P 95.4 0.016 3.5E-07 54.7 3.9 32 388-419 19-53 (196)
399 TIGR00750 lao LAO/AO transport 95.4 0.047 1E-06 55.0 7.5 27 385-411 32-58 (300)
400 COG3842 PotA ABC-type spermidi 95.4 0.0092 2E-07 61.4 2.4 22 390-411 34-55 (352)
401 TIGR03880 KaiC_arch_3 KaiC dom 95.3 0.023 5E-07 54.4 5.0 34 386-419 15-51 (224)
402 PRK00771 signal recognition pa 95.3 0.013 2.7E-07 62.3 3.3 26 386-411 94-119 (437)
403 PF00625 Guanylate_kin: Guanyl 95.3 0.019 4.1E-07 53.3 4.2 29 387-415 2-30 (183)
404 PRK08699 DNA polymerase III su 95.3 0.017 3.7E-07 59.1 4.1 26 387-412 21-46 (325)
405 COG2204 AtoC Response regulato 95.3 0.033 7.1E-07 59.3 6.1 58 356-419 139-199 (464)
406 COG3839 MalK ABC-type sugar tr 95.3 0.012 2.5E-07 60.4 2.7 25 388-412 30-54 (338)
407 TIGR02655 circ_KaiC circadian 95.3 0.053 1.2E-06 58.4 7.9 35 385-419 261-298 (484)
408 PF02562 PhoH: PhoH-like prote 95.2 0.012 2.5E-07 56.3 2.5 23 389-411 21-43 (205)
409 TIGR02524 dot_icm_DotB Dot/Icm 95.2 0.024 5.3E-07 58.7 5.0 25 387-411 134-158 (358)
410 TIGR02782 TrbB_P P-type conjug 95.2 0.019 4.2E-07 58.0 4.1 26 387-412 132-157 (299)
411 TIGR02031 BchD-ChlD magnesium 95.2 0.014 3E-07 64.4 3.3 33 387-419 16-50 (589)
412 cd00984 DnaB_C DnaB helicase C 95.2 0.029 6.3E-07 54.0 5.1 35 385-419 11-49 (242)
413 cd01123 Rad51_DMC1_radA Rad51_ 95.1 0.018 4E-07 55.2 3.6 25 387-411 19-43 (235)
414 TIGR00174 miaA tRNA isopenteny 95.1 0.02 4.2E-07 57.6 3.8 29 390-418 2-30 (287)
415 TIGR00064 ftsY signal recognit 95.1 0.025 5.4E-07 56.4 4.5 27 385-411 70-96 (272)
416 PF10662 PduV-EutP: Ethanolami 95.1 0.015 3.3E-07 52.4 2.6 24 388-411 2-25 (143)
417 PRK04328 hypothetical protein; 95.1 0.031 6.7E-07 54.8 5.0 34 386-419 22-58 (249)
418 smart00072 GuKc Guanylate kina 95.1 0.02 4.4E-07 53.2 3.6 24 388-411 3-26 (184)
419 PF08298 AAA_PrkA: PrkA AAA do 95.1 0.033 7.1E-07 57.2 5.3 59 359-420 62-122 (358)
420 cd01673 dNK Deoxyribonucleosid 95.0 0.019 4.1E-07 53.5 3.3 27 390-416 2-28 (193)
421 TIGR02655 circ_KaiC circadian 95.0 0.028 6E-07 60.5 5.0 35 385-419 19-57 (484)
422 PRK00081 coaE dephospho-CoA ki 95.0 0.022 4.8E-07 53.7 3.6 28 389-417 4-31 (194)
423 TIGR00041 DTMP_kinase thymidyl 95.0 0.017 3.6E-07 53.8 2.8 26 388-413 4-29 (195)
424 TIGR02533 type_II_gspE general 95.0 0.028 6E-07 60.6 4.8 50 354-412 218-267 (486)
425 cd00820 PEPCK_HprK Phosphoenol 95.0 0.018 4E-07 49.3 2.7 22 387-408 15-36 (107)
426 PF00005 ABC_tran: ABC transpo 95.0 0.013 2.7E-07 51.3 1.7 28 385-412 9-36 (137)
427 PLN02840 tRNA dimethylallyltra 94.9 0.021 4.6E-07 60.1 3.6 30 389-418 23-52 (421)
428 cd01129 PulE-GspE PulE/GspE Th 94.9 0.032 6.8E-07 55.4 4.6 48 356-412 58-105 (264)
429 cd01128 rho_factor Transcripti 94.9 0.02 4.3E-07 56.4 3.2 28 386-413 15-42 (249)
430 TIGR02788 VirB11 P-type DNA tr 94.9 0.021 4.5E-07 57.8 3.3 29 386-414 143-171 (308)
431 PRK05439 pantothenate kinase; 94.8 0.05 1.1E-06 55.3 5.8 25 388-412 87-111 (311)
432 PRK10646 ADP-binding protein; 94.8 0.056 1.2E-06 49.3 5.6 28 387-414 28-55 (153)
433 PRK05537 bifunctional sulfate 94.8 0.067 1.4E-06 58.8 7.1 27 387-413 392-418 (568)
434 PTZ00301 uridine kinase; Provi 94.8 0.032 7E-07 53.5 4.1 22 390-411 6-27 (210)
435 COG4619 ABC-type uncharacteriz 94.8 0.023 4.9E-07 52.7 2.9 29 385-413 27-55 (223)
436 TIGR01420 pilT_fam pilus retra 94.8 0.03 6.6E-07 57.6 4.2 26 387-412 122-147 (343)
437 TIGR02012 tigrfam_recA protein 94.8 0.024 5.2E-07 57.8 3.4 24 388-411 56-79 (321)
438 PF08477 Miro: Miro-like prote 94.8 0.024 5.3E-07 47.9 2.9 24 390-413 2-25 (119)
439 PRK06964 DNA polymerase III su 94.7 0.035 7.5E-07 57.2 4.5 28 386-413 20-47 (342)
440 PF03029 ATP_bind_1: Conserved 94.7 0.025 5.4E-07 55.3 3.2 27 393-419 2-31 (238)
441 cd01122 GP4d_helicase GP4d_hel 94.7 0.043 9.4E-07 53.9 5.0 35 385-419 28-66 (271)
442 KOG1029 Endocytic adaptor prot 94.7 3.5 7.5E-05 46.2 19.4 21 101-121 313-333 (1118)
443 PF07931 CPT: Chloramphenicol 94.7 0.034 7.3E-07 51.8 3.9 31 389-419 3-33 (174)
444 PRK12724 flagellar biosynthesi 94.7 0.065 1.4E-06 56.5 6.4 24 388-411 224-247 (432)
445 PRK11889 flhF flagellar biosyn 94.7 0.045 9.7E-07 57.4 5.1 25 387-411 241-265 (436)
446 PRK04132 replication factor C 94.7 0.02 4.3E-07 65.3 2.7 42 353-402 14-55 (846)
447 cd02025 PanK Pantothenate kina 94.7 0.024 5.3E-07 54.6 3.0 23 390-412 2-24 (220)
448 PF13476 AAA_23: AAA domain; P 94.6 0.021 4.6E-07 52.6 2.4 28 388-415 20-47 (202)
449 PRK05703 flhF flagellar biosyn 94.6 0.026 5.7E-07 59.7 3.3 25 387-411 221-245 (424)
450 PRK12723 flagellar biosynthesi 94.6 0.026 5.5E-07 59.1 3.2 25 387-411 174-198 (388)
451 COG3604 FhlA Transcriptional r 94.6 0.064 1.4E-06 57.1 6.1 66 354-428 219-287 (550)
452 cd00544 CobU Adenosylcobinamid 94.6 0.036 7.8E-07 51.3 3.8 29 390-418 2-30 (169)
453 PRK10923 glnG nitrogen regulat 94.6 0.059 1.3E-06 57.3 6.0 58 356-419 136-196 (469)
454 cd01393 recA_like RecA is a b 94.6 0.035 7.5E-07 52.9 3.8 24 388-411 20-43 (226)
455 KOG2035 Replication factor C, 94.6 0.025 5.5E-07 56.1 2.8 48 356-411 11-58 (351)
456 cd01983 Fer4_NifH The Fer4_Nif 94.6 0.045 9.7E-07 43.8 3.9 22 390-411 2-23 (99)
457 PRK10416 signal recognition pa 94.5 0.029 6.3E-07 57.2 3.3 26 386-411 113-138 (318)
458 PRK12269 bifunctional cytidyla 94.5 0.031 6.8E-07 64.0 3.9 34 384-417 29-64 (863)
459 TIGR01663 PNK-3'Pase polynucle 94.5 0.032 6.9E-07 60.6 3.7 31 385-415 367-397 (526)
460 TIGR03575 selen_PSTK_euk L-ser 94.5 0.038 8.2E-07 56.8 4.0 23 390-412 2-24 (340)
461 TIGR01425 SRP54_euk signal rec 94.5 0.039 8.5E-07 58.4 4.2 34 386-419 99-135 (429)
462 PLN03210 Resistant to P. syrin 94.4 0.044 9.5E-07 65.1 5.0 54 355-414 181-234 (1153)
463 cd00983 recA RecA is a bacter 94.4 0.032 6.9E-07 57.0 3.3 24 388-411 56-79 (325)
464 TIGR02236 recomb_radA DNA repa 94.4 0.033 7.2E-07 56.2 3.5 24 388-411 96-119 (310)
465 cd03280 ABC_MutS2 MutS2 homolo 94.4 0.058 1.3E-06 50.9 4.9 21 388-408 29-49 (200)
466 PRK04296 thymidine kinase; Pro 94.4 0.029 6.3E-07 52.7 2.8 30 389-418 4-36 (190)
467 COG0324 MiaA tRNA delta(2)-iso 94.4 0.039 8.6E-07 55.8 3.9 33 387-419 3-35 (308)
468 PRK06995 flhF flagellar biosyn 94.4 0.047 1E-06 58.6 4.7 24 388-411 257-280 (484)
469 PRK06851 hypothetical protein; 94.4 0.032 7E-07 57.9 3.3 30 388-417 215-247 (367)
470 KOG0060 Long-chain acyl-CoA tr 94.3 0.026 5.6E-07 61.0 2.6 27 385-411 459-485 (659)
471 COG0283 Cmk Cytidylate kinase 94.3 0.037 8E-07 53.0 3.3 29 389-417 6-34 (222)
472 PLN02842 nucleotide kinase 94.3 0.033 7.1E-07 60.0 3.3 27 391-417 1-27 (505)
473 PRK14733 coaE dephospho-CoA ki 94.3 0.041 8.9E-07 52.5 3.7 29 389-417 8-36 (204)
474 PRK13695 putative NTPase; Prov 94.3 0.035 7.5E-07 51.1 3.1 23 389-411 2-24 (174)
475 PRK12726 flagellar biosynthesi 94.3 0.046 1E-06 57.0 4.2 34 386-419 205-241 (407)
476 TIGR00767 rho transcription te 94.3 0.11 2.3E-06 54.5 7.0 28 385-412 166-193 (415)
477 cd01918 HprK_C HprK/P, the bif 94.3 0.033 7.1E-07 50.6 2.7 24 387-410 14-37 (149)
478 PF13481 AAA_25: AAA domain; P 94.2 0.035 7.6E-07 51.4 3.0 23 389-411 34-56 (193)
479 COG3265 GntK Gluconate kinase 94.2 0.034 7.4E-07 50.3 2.7 25 393-417 1-25 (161)
480 TIGR00416 sms DNA repair prote 94.2 0.12 2.6E-06 55.3 7.3 35 385-419 92-129 (454)
481 cd00876 Ras Ras family. The R 94.2 0.033 7.1E-07 49.1 2.6 22 389-410 1-22 (160)
482 PRK12608 transcription termina 94.2 0.034 7.4E-07 57.7 3.0 26 388-413 134-159 (380)
483 PRK09376 rho transcription ter 94.2 0.033 7.1E-07 58.2 2.8 26 387-412 169-194 (416)
484 PRK06851 hypothetical protein; 94.1 0.027 5.9E-07 58.4 2.2 24 388-411 31-54 (367)
485 cd04160 Arfrp1 Arfrp1 subfamil 94.1 0.038 8.1E-07 49.5 2.9 23 389-411 1-23 (167)
486 PRK14974 cell division protein 94.1 0.04 8.6E-07 56.6 3.3 25 387-411 140-164 (336)
487 KOG1803 DNA helicase [Replicat 94.1 0.023 4.9E-07 61.5 1.6 19 389-407 203-221 (649)
488 cd01878 HflX HflX subfamily. 94.1 0.085 1.8E-06 49.3 5.4 24 387-410 41-64 (204)
489 TIGR02525 plasmid_TraJ plasmid 94.1 0.06 1.3E-06 56.1 4.6 25 388-412 150-174 (372)
490 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.1 0.035 7.6E-07 52.7 2.8 26 386-411 29-54 (218)
491 COG1116 TauB ABC-type nitrate/ 94.1 0.034 7.4E-07 54.3 2.7 25 387-411 29-53 (248)
492 PRK13973 thymidylate kinase; P 94.1 0.064 1.4E-06 51.2 4.5 31 389-419 5-38 (213)
493 PF13555 AAA_29: P-loop contai 94.1 0.052 1.1E-06 41.9 3.1 23 389-411 25-47 (62)
494 COG1126 GlnQ ABC-type polar am 94.0 0.035 7.6E-07 53.3 2.5 25 386-410 27-51 (240)
495 PRK10867 signal recognition pa 94.0 0.054 1.2E-06 57.5 4.2 35 385-419 98-136 (433)
496 PLN03187 meiotic recombination 94.0 0.048 1.1E-06 56.1 3.7 22 389-410 128-149 (344)
497 COG4525 TauB ABC-type taurine 94.0 0.043 9.2E-07 52.1 3.0 28 384-411 28-55 (259)
498 PRK09435 membrane ATPase/prote 94.0 0.11 2.4E-06 53.2 6.3 32 388-419 57-91 (332)
499 cd03281 ABC_MSH5_euk MutS5 hom 94.0 0.1 2.2E-06 50.0 5.7 22 388-409 30-51 (213)
500 PLN02348 phosphoribulokinase 94.0 0.061 1.3E-06 56.2 4.3 25 388-412 50-74 (395)
No 1
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-100 Score=760.23 Aligned_cols=444 Identities=52% Similarity=0.695 Sum_probs=385.1
Q ss_pred CcccchhhhHHHHHHHHHhhhhccccccCCCCcCCCCCCCCCCCCCC--CC-chhhhhhhcCCC-CCCCCCCCCCCchhh
Q 012671 1 MPASKLSSCLAVAAAVASLSTASNRAFADAPSRFSFFSSSPQPTSSG--ND-EAEQTADAQKSR-EPEEPRGSGFDPEAL 76 (458)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~f~~~~~~~~~~--~~-~~~~~~~~~~~~-~~~~~~~~~fdp~~l 76 (458)
||+.+.+ .+.++++++...+-+.+|+||+|.|++||.+|++|-|| |+ |++........| +++...+++|||++|
T Consensus 1 Ma~kc~a--~~i~a~~~S~~~~~nka~ad~~f~~~~fs~sp~~~~pp~~~~~~~s~~~~~~~~p~~~Pk~~~~gFDpeaL 78 (630)
T KOG0742|consen 1 MAQKCAA--GSISALAMSWLFGINKAYADSRFGFPGFSASPPPPLPPAQPGAPGSGDRGEGDRPDPAPKDSWSGFDPEAL 78 (630)
T ss_pred CchhHHH--HHHHHHHHHHHhccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccccCCChHHH
Confidence 5665332 33334444444555669999999999988766543232 22 121111111112 233345789999999
Q ss_pred hHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHH
Q 012671 77 ERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDE 156 (458)
Q Consensus 77 er~a~a~~~l~~s~~a~~~~~~~~~~e~t~q~e~~~~~~e~~~~~~~~~~~~~~~~~ee~r~~~~~~~~~~~~~a~y~D~ 156 (458)
||||||||+||.|||||++|+++++||+|+|.|++++..+|++++++.+++++|+.+||+||++++|+++++|+++|+|+
T Consensus 79 ERaAKAlrein~s~~aK~vfel~r~qE~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k~q~arYqD~ 158 (630)
T KOG0742|consen 79 ERAAKALREINHSPYAKDVFELARMQEQTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEETQQKQQRARYQDK 158 (630)
T ss_pred HHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhc
Q 012671 157 LARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTE 236 (458)
Q Consensus 157 L~rkr~q~e~e~~~~~~e~~~~~qees~~rqE~~r~~~e~~l~~lr~~~e~e~~~l~~~~~~~k~~~e~~~r~~~~r~n~ 236 (458)
|+||||++|++.|+..|++.|++||+|++|||++|+.|+++|++++++||.++++++++|++.++++|++||+|+++.|+
T Consensus 159 larkr~~~e~e~qr~~n~ElvrmQEeS~irqE~aRraTeE~iqaqrr~tE~erae~EretiRvkA~Aeaegraheakl~e 238 (630)
T KOG0742|consen 159 LARKRYEDELEAQRRLNEELVRMQEESVIRQEQARRATEEQIQAQRRKTEMERAEAERETIRVKAKAEAEGRAHEAKLNE 238 (630)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcchhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhhHHHHHhhchhhhhhHHHHHHhhccccceeeeecccceeeeeeeecccccccchhHHHHHhCCCcc
Q 012671 237 DHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSL 316 (458)
Q Consensus 237 D~~le~~~~~a~~~r~~~l~~i~~~~~~lg~gl~~ll~D~dklv~~v~g~t~Lavgvyta~~~~~v~~~~~e~~Lg~p~l 316 (458)
|+|+++++.+++++|++|++.|+++|++||+|++.+|+|++|++++|||+|.|++||||+++|+.|+|+||+++||+|||
T Consensus 239 dvnrr~l~~~~n~eRekwl~aInTtf~higgG~r~~ltD~~Kli~tVgGlTaLAaGvYTtkeg~~V~w~yi~r~LGqPSL 318 (630)
T KOG0742|consen 239 DVNRRQLRLKANEEREKWLEAINTTFTHIGGGLRAFLTDWNKLIATVGGLTALAAGVYTTKEGTLVTWRYIERRLGQPSL 318 (630)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhHHHhhhHHHHHhhhhHhHHHHhhhHHHHHhhheeccccchhHHHHHHHHcCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCcccchhhhhHHHhhhcccCCCCCCCCCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCC
Q 012671 317 IRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPP 396 (458)
Q Consensus 317 vRe~sr~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPP 396 (458)
|||+||.+|||.+.++...+.+.. .........+.|++||++|.+.++|++|++.+.|++.|..|||||||||||
T Consensus 319 iREsSrg~~pw~gsls~~k~~i~~-----~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPP 393 (630)
T KOG0742|consen 319 IRESSRGRFPWIGSLSALKHPIQG-----SRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPP 393 (630)
T ss_pred hhhhccccCCCcccHHHHhchhhh-----hHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCC
Confidence 999999999999998877666511 122233455669999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhCcceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhh-hcCCceeeC
Q 012671 397 GTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMH-FYASATVYI 458 (458)
Q Consensus 397 GTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~-~~~p~iifi 458 (458)
||||||+|+-||.++|+||.+|++.|..-+-. +..-.|..+||-+. ....-++||
T Consensus 394 GTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~-------qaVTkiH~lFDWakkS~rGLllFI 449 (630)
T KOG0742|consen 394 GTGKTMFARELARHSGLDYAIMTGGDVAPLGA-------QAVTKIHKLFDWAKKSRRGLLLFI 449 (630)
T ss_pred CCCchHHHHHHHhhcCCceehhcCCCccccch-------HHHHHHHHHHHHHhhcccceEEEe
Confidence 99999999999999999999999887765422 22335667777664 344455554
No 2
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=100.00 E-value=4.8e-73 Score=547.68 Aligned_cols=259 Identities=59% Similarity=0.795 Sum_probs=254.8
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhH
Q 012671 60 SREPEEPRGSGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNL 139 (458)
Q Consensus 60 ~~~~~~~~~~~fdp~~ler~a~a~~~l~~s~~a~~~~~~~~~~e~t~q~e~~~~~~e~~~~~~~~~~~~~~~~~ee~r~~ 139 (458)
.++++...++||||++|||||||||+|++|||||+||||+++||.|||+|++++++||+++++|+++++.++++||+||+
T Consensus 18 ~~~~~~~~~~~FDP~aLERaAkAlrel~~S~~Ak~afel~k~QE~TkQ~E~~ak~~e~ea~~~q~~~e~~rv~~EE~Rkt 97 (276)
T PF12037_consen 18 RNDNPRTTASGFDPEALERAAKALRELNSSPHAKKAFELMKKQEETKQAELQAKIAEYEAAQAQAEIERQRVEAEERRKT 97 (276)
T ss_pred CCCCCCcccCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhchHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012671 140 VQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRV 219 (458)
Q Consensus 140 ~~~~~~~~~~~a~y~D~L~rkr~q~e~e~~~~~~e~~~~~qees~~rqE~~r~~~e~~l~~lr~~~e~e~~~l~~~~~~~ 219 (458)
+++|++++++++||+|+|+||||+++++.++.+|+++|++||+|+.|||++|++|+++|+.+++++++++++|+++|+++
T Consensus 98 ~~~q~q~~~q~aqY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~~~ 177 (276)
T PF12037_consen 98 LQQQTQQKQQRAQYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETERA 177 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHhhcChhHHHHHHHHHhhhHHHHHhhchhhhhhHHHHHHhhccccceeeeecccceeeeeeeecccc
Q 012671 220 KAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREG 299 (458)
Q Consensus 220 k~~~e~~~r~~~~r~n~D~~le~~~~~a~~~r~~~l~~i~~~~~~lg~gl~~ll~D~dklv~~v~g~t~Lavgvyta~~~ 299 (458)
++++|++|||+++|+|+|+++++++.+++++|++||++|+++|++||.|+..|++|+++|+++|||+|+|++|||++++|
T Consensus 178 k~~AEa~gra~~eReN~Di~l~~l~~ka~e~R~t~lesI~t~f~~lg~G~~~lltD~~kl~~~vgg~T~LA~GvYtar~g 257 (276)
T PF12037_consen 178 KAEAEAEGRAKEERENEDINLEQLRLKAEEERETVLESINTTFSHLGEGFRALLTDRDKLTTTVGGLTALAAGVYTAREG 257 (276)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHhCCCcchh
Q 012671 300 ARVTWGYVNRILGQPSLIR 318 (458)
Q Consensus 300 ~~v~~~~~e~~Lg~p~lvR 318 (458)
++|+|+||+++||+|||||
T Consensus 258 t~v~~~yie~rLGkPsLVR 276 (276)
T PF12037_consen 258 TRVAGRYIEARLGKPSLVR 276 (276)
T ss_pred HHHHHHHHHHHcCCCccCC
Confidence 9999999999999999997
No 3
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.5e-26 Score=228.82 Aligned_cols=263 Identities=15% Similarity=0.120 Sum_probs=219.9
Q ss_pred hhhhHHHHHHHHHhhhhccccccCCCCcCCC--CCCCCCCCCCCCCchhhhhhhc-CCCCCCCC-CCCCCCchhhhHHH-
Q 012671 6 LSSCLAVAAAVASLSTASNRAFADAPSRFSF--FSSSPQPTSSGNDEAEQTADAQ-KSREPEEP-RGSGFDPEALERAA- 80 (458)
Q Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~fdp~~ler~a- 80 (458)
|+..+++++.++++.+.+ ...+.+|++|+ ||+||++||||-||..+..+.. .....+.| ++|.-...+|++.|
T Consensus 1 Ma~kc~a~~i~a~~~S~~--~~~nka~ad~~f~~~~fs~sp~~~~pp~~~~~~~s~~~~~~~~p~~~Pk~~~~gFDpeaL 78 (630)
T KOG0742|consen 1 MAQKCAAGSISALAMSWL--FGINKAYADSRFGFPGFSASPPPPLPPAQPGAPGSGDRGEGDRPDPAPKDSWSGFDPEAL 78 (630)
T ss_pred CchhHHHHHHHHHHHHHH--hccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccccCCChHHH
Confidence 444555555555555554 44555999997 8889888777656543322111 11222223 37777778999999
Q ss_pred -HHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHH
Q 012671 81 -KALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDELAR 159 (458)
Q Consensus 81 -~a~~~l~~s~~a~~~~~~~~~~e~t~q~e~~~~~~e~~~~~~~~~~~~~~~~~ee~r~~~~~~~~~~~~~a~y~D~L~r 159 (458)
+|+|.|+.++|++++ ++++|..+.+| +++++|+.+...+++..+++.+.|..|+..++|.+..++.+|.+.+.+
T Consensus 79 ERaAKAlrein~s~~a---K~vfel~r~qE-~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k~q~a- 153 (630)
T KOG0742|consen 79 ERAAKALREINHSPYA---KDVFELARMQE-QTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEETQQKQQRA- 153 (630)
T ss_pred HHHHHHHHhhccCccH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999 99999999999 999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhchHHHhh--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcC
Q 012671 160 KRLQTDHEAQRRHNTELVKM--QEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTED 237 (458)
Q Consensus 160 kr~q~e~e~~~~~~e~~~~~--qees~~rqE~~r~~~e~~l~~lr~~~e~e~~~l~~~~~~~k~~~e~~~r~~~~r~n~D 237 (458)
+|||++.+++.+.+.+.++ ++|++.+||+.-++.+. +|++|+++++.+++++++++++
T Consensus 154 -rYqD~larkr~~~e~e~qr~~n~ElvrmQEeS~irqE~----aRraTeE~iqaqrr~tE~erae--------------- 213 (630)
T KOG0742|consen 154 -RYQDKLARKRYEDELEAQRRLNEELVRMQEESVIRQEQ----ARRATEEQIQAQRRKTEMERAE--------------- 213 (630)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH----HHHhHHHHHHHHHHHhHHHHHH---------------
Confidence 9999999999997765443 35899999999888887 9999999999999999999999
Q ss_pred hhHHHHHHHHHhhhHHHHHhhchhhhhhHHHHHHhhc-cccceeeee-cccceeeeeeee
Q 012671 238 HNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLT-DRNKLVMTV-GGATALAAGIYT 295 (458)
Q Consensus 238 ~~le~~~~~a~~~r~~~l~~i~~~~~~lg~gl~~ll~-D~dklv~~v-~g~t~Lavgvyt 295 (458)
++++.+++++.+++++...+.+.+.+++...+....+ ++++|+..+ .++++|++|+.+
T Consensus 214 ~EretiRvkA~Aeaegraheakl~edvnrr~l~~~~n~eRekwl~aInTtf~higgG~r~ 273 (630)
T KOG0742|consen 214 AERETIRVKAKAEAEGRAHEAKLNEDVNRRQLRLKANEEREKWLEAINTTFTHIGGGLRA 273 (630)
T ss_pred HHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhHHHhhhHHHH
Confidence 8899999999999999999999999999999988777 678999999 668888887655
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.7e-23 Score=205.93 Aligned_cols=184 Identities=17% Similarity=0.264 Sum_probs=118.8
Q ss_pred HHhhchhhhhhHHHHHHhhccccceeeeecccceeeeeeeecccccccchhHHHHHhCCCcchhhcccCCCCcccchhhh
Q 012671 255 LAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQA 334 (458)
Q Consensus 255 l~~i~~~~~~lg~gl~~ll~D~dklv~~v~g~t~Lavgvyta~~~~~v~~~~~e~~Lg~p~lvRe~sr~~~~~~~~l~~~ 334 (458)
+..++.....+|..++.+ |.+..++...+.....++ +.++++.-.-+|...--.++.++.....+.+-
T Consensus 65 ~~~l~~~pl~vg~v~e~i--d~~~~iVks~~g~~~vV~----------i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~ 132 (406)
T COG1222 65 IERLKEPPLIVGTVLEVL--DDGRAIVKSSTGPKFVVN----------ILSFVDRDLLEPGMRVALNRDSYSIVRVLPPE 132 (406)
T ss_pred HHHhcCCCceEEEEEEEc--CCceEEEEeCCCCeEEEe----------ccCCcCHHHcCCCCEEEEcCCcceeeeeCCCc
Confidence 667777888888876544 445444444221121222 12233333334433333333333333334444
Q ss_pred hHHHhhhc-ccCCCCCCCCCCCCCccccCChHHHHHHHHHHH-HHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 335 MNKVIRNK-TSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAK-ATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 335 ~~~l~~~~-~~~~~~~~~~~~~~~~dvi~~~~l~~~l~~l~~-~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+.++..| ....|.++|.+.+++++.+ .++.+.+.--.. ...+...+..||+|||||||||||||+|||++|++.+
T Consensus 133 ~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi--~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~ 210 (406)
T COG1222 133 VDPRVSVMEVEEKPDVTYEDIGGLDEQI--QEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD 210 (406)
T ss_pred cCchhheeeeccCCCCChhhccCHHHHH--HHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 44444445 4555666666655555444 444444432222 2345667789999999999999999999999999999
Q ss_pred cceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 413 EMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 413 ~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.+|+.|+ +|+++.+|+|++.+. ++.+|.+|+..+||||||
T Consensus 211 AtFIrvv---gSElVqKYiGEGaRl---VRelF~lArekaPsIIFi 250 (406)
T COG1222 211 ATFIRVV---GSELVQKYIGEGARL---VRELFELAREKAPSIIFI 250 (406)
T ss_pred ceEEEec---cHHHHHHHhccchHH---HHHHHHHHhhcCCeEEEE
Confidence 9999999 999999999999664 557888899999999997
No 5
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9.3e-20 Score=174.13 Aligned_cols=184 Identities=20% Similarity=0.262 Sum_probs=116.7
Q ss_pred HHhhchhhhhhHHHHHHhhccccceeeeecccceeeeeeeecccccccchhHHHHHhCCCcchhhcccCCCCcccchhhh
Q 012671 255 LAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQA 334 (458)
Q Consensus 255 l~~i~~~~~~lg~gl~~ll~D~dklv~~v~g~t~Lavgvyta~~~~~v~~~~~e~~Lg~p~lvRe~sr~~~~~~~~l~~~ 334 (458)
+..|+...-.+|..+... |.+.-++ |..++ +-|.. .+++.+++-|-+|+..-...|++-...+.+..-
T Consensus 69 vkriqsvplvigqfle~v--dqnt~iv--gsttg---sny~v-----rilstidrellkps~svalhrhsnalvdvlppe 136 (408)
T KOG0727|consen 69 VKRIQSVPLVIGQFLEAV--DQNTAIV--GSTTG---SNYYV-----RILSTIDRELLKPSASVALHRHSNALVDVLPPE 136 (408)
T ss_pred HHHHhccchHHHHHHHhh--hccCcee--ecccC---CceEE-----eehhhhhHHHcCCccchhhhhcccceeeccCCc
Confidence 335666777788877655 5443222 22222 22222 257788898999988666655543333322222
Q ss_pred hHHHhhhc-ccCCCCCCCCCCCCCccccCChHHHHHHHHH-HHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 335 MNKVIRNK-TSAGTAGPVEAIKNNGDIILHPSLQRRIQHL-AKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 335 ~~~l~~~~-~~~~~~~~~~~~~~~~dvi~~~~l~~~l~~l-~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.++.+..+ ....|..++.+.++++ +. ..++.+.++-. .....+...+..|++++|||||||||||||++++|++.-
T Consensus 137 adssi~ml~~~ekpdvsy~diggld-~q-kqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 137 ADSSISMLGPDEKPDVSYADIGGLD-VQ-KQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred ccccccccCCCCCCCccccccccch-hh-HHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 22211111 1222444444444444 21 12333333322 223344556789999999999999999999999999999
Q ss_pred cceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 413 EMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 413 ~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
..|+.++ +|+++.+|+|++.+ .++.+|+.++.++|+||||
T Consensus 215 a~firvv---gsefvqkylgegpr---mvrdvfrlakenapsiifi 254 (408)
T KOG0727|consen 215 AAFIRVV---GSEFVQKYLGEGPR---MVRDVFRLAKENAPSIIFI 254 (408)
T ss_pred hheeeec---cHHHHHHHhccCcH---HHHHHHHHHhccCCcEEEe
Confidence 9999999 99999999999965 4557788899999999997
No 6
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=99.81 E-value=2e-18 Score=167.85 Aligned_cols=207 Identities=14% Similarity=0.134 Sum_probs=184.3
Q ss_pred CCCCCCCCCCCCchhhhHHH--HHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 012671 61 REPEEPRGSGFDPEALERAA--KALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRN 138 (458)
Q Consensus 61 ~~~~~~~~~~fdp~~ler~a--~a~~~l~~s~~a~~~~~~~~~~e~t~q~e~~~~~~e~~~~~~~~~~~~~~~~~ee~r~ 138 (458)
++.+.+++++....+|||.+ +|++.|+...++++| .+.+|.++++| .++++|+.+.++++++...+...|..|+
T Consensus 14 ~~~~~~~~~~~~~~~FDP~aLERaAkAlrel~~S~~A---k~afel~k~QE-~TkQ~E~~ak~~e~ea~~~q~~~e~~rv 89 (276)
T PF12037_consen 14 GSKPRNDNPRTTASGFDPEALERAAKALRELNSSPHA---KKAFELMKKQE-ETKQAELQAKIAEYEAAQAQAEIERQRV 89 (276)
T ss_pred CcCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcChhH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999 999999999999999 99999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhchHHHhhhH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012671 139 LVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQE--ESSIRKEQARRSTEEQIQAQQRLTEKERAEIERET 216 (458)
Q Consensus 139 ~~~~~~~~~~~~a~y~D~L~rkr~q~e~e~~~~~~e~~~~~qe--es~~rqE~~r~~~e~~l~~lr~~~e~e~~~l~~~~ 216 (458)
..+++.+.-++..+.+.+.+ +|+|+|+++|++.+...+++. +.+.+||+.-.+.++ +|++|++++..+++.+
T Consensus 90 ~~EE~Rkt~~~q~q~~~q~a--qY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~----~Rr~Te~~i~~~r~~t 163 (276)
T PF12037_consen 90 EAEERRKTLQQQTQQKQQRA--QYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQ----MRRATEEQILAQRRQT 163 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 99999999999999998888 999999999999776555443 777788888777776 9999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHhhcChhHHHHHHHHHhhhHHHHHhhchhhhhhHHHHHHhhc-cccceeeee-cccceeeee
Q 012671 217 IRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLT-DRNKLVMTV-GGATALAAG 292 (458)
Q Consensus 217 ~~~k~~~e~~~r~~~~r~n~D~~le~~~~~a~~~r~~~l~~i~~~~~~lg~gl~~ll~-D~dklv~~v-~g~t~Lavg 292 (458)
+..++. +.++.+++++.++-++.+..-..+.+..-..+..-.. +.++|+..+ .++++|+.|
T Consensus 164 ~~~eae---------------L~~e~~~~k~~AEa~gra~~eReN~Di~l~~l~~ka~e~R~t~lesI~t~f~~lg~G 226 (276)
T PF12037_consen 164 EEEEAE---------------LRRETERAKAEAEAEGRAKEERENEDINLEQLRLKAEEERETVLESINTTFSHLGEG 226 (276)
T ss_pred HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888 8888999999999999999999999998888877766 778888887 456665555
No 7
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.76 E-value=8.4e-19 Score=168.24 Aligned_cols=100 Identities=26% Similarity=0.331 Sum_probs=89.8
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCC-CcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAP-FRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLI 431 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p-~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ 431 (458)
+...|+|||||++.+...+-|.....|....+.. |+||||||||||||||+|++||+++..+++.|. .++++..|+
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vk---at~liGehV 192 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVK---ATELIGEHV 192 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEec---hHHHHHHHh
Confidence 5568999999999999888888888888776643 689999999999999999999999999999999 899999999
Q ss_pred hhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 432 GRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 432 ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
|.+.+ .|..++..+++.+||||||
T Consensus 193 Gdgar---~Ihely~rA~~~aPcivFi 216 (368)
T COG1223 193 GDGAR---RIHELYERARKAAPCIVFI 216 (368)
T ss_pred hhHHH---HHHHHHHHHHhcCCeEEEe
Confidence 98855 5667888899999999997
No 8
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.4e-18 Score=161.95 Aligned_cols=175 Identities=20% Similarity=0.283 Sum_probs=122.1
Q ss_pred HHHhhchhhhhhHHHHHHhhccccceeeeec--c--cceee--eeeeecccccccchhH----HHHHhCCCcchhhcccC
Q 012671 254 WLAAINTTFSHIEEGVRSLLTDRNKLVMTVG--G--ATALA--AGIYTTREGARVTWGY----VNRILGQPSLIRESSIG 323 (458)
Q Consensus 254 ~l~~i~~~~~~lg~gl~~ll~D~dklv~~v~--g--~t~La--vgvyta~~~~~v~~~~----~e~~Lg~p~lvRe~sr~ 323 (458)
.+.-++..++.+|..++.+ ++.++++.+- | +..+. +.+.....+++|.++. +..+|.
T Consensus 60 el~~lqe~gsyvgev~k~m--~k~kVLVKvhpegKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLp----------- 126 (404)
T KOG0728|consen 60 ELQLLQEPGSYVGEVVKAM--GKKKVLVKVHPEGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILP----------- 126 (404)
T ss_pred HHHHHhcCcchHHHHHHhc--CcceEEEEEcCCCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcc-----------
Confidence 4667888999999999887 7778877772 2 23333 5666777778777653 223333
Q ss_pred CCCcccchhhhhHHHhhhc-ccCCCCCCCCCCCCCccccCChHHHHHHHHHHHHHHh-hhhhcCCCcceeeecCCCCChH
Q 012671 324 KFPWSGLLSQAMNKVIRNK-TSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATAN-TKIHQAPFRNMLFYGPPGTGKT 401 (458)
Q Consensus 324 ~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~dvi~~~~l~~~l~~l~~~~~~-~~~~~~p~rnvLl~GPPGTGKT 401 (458)
+-.+.++.-| .+.-|...++-.++++..| .++++.+.-.+..+.. ...+...|+++|||||||||||
T Consensus 127 ---------nKvDpLVsLMmVeKvPDStYeMiGgLd~QI--keIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGkt 195 (404)
T KOG0728|consen 127 ---------NKVDPLVSLMMVEKVPDSTYEMIGGLDKQI--KEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKT 195 (404)
T ss_pred ---------cccchhhHHHhhhhCCccHHHHhccHHHHH--HHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchh
Confidence 1111122212 4444555566666665444 4444555444444433 3355678899999999999999
Q ss_pred HHHHHHHHHhCcceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 402 MVAREIARKSEEMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 402 ~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+||+++|++..+.|+.++ +++++.+|+|++.+..+ .||-+++..+|+|||+
T Consensus 196 LlaraVahht~c~firvs---gselvqk~igegsrmvr---elfvmarehapsiifm 246 (404)
T KOG0728|consen 196 LLARAVAHHTDCTFIRVS---GSELVQKYIGEGSRMVR---ELFVMAREHAPSIIFM 246 (404)
T ss_pred HHHHHHHhhcceEEEEec---hHHHHHHHhhhhHHHHH---HHHHHHHhcCCceEee
Confidence 999999999999999999 99999999999976555 5666788899999995
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.4e-18 Score=170.94 Aligned_cols=101 Identities=23% Similarity=0.333 Sum_probs=88.7
Q ss_pred CCCCCCccccCChHHHHHHHHHHHH----HHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKA----TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~----~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
++...|+||.|..+.++.|.+.+.. ..+.+....|+++|||+||||||||||||+||.+||.+|+.|+ .+.+.
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVS---sstlt 282 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVS---SSTLT 282 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEec---hhhhh
Confidence 4567899999999999988877764 3345556699999999999999999999999999999999999 88899
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
++|-|+++++. ++||++++.++|++|||
T Consensus 283 SKwRGeSEKlv---RlLFemARfyAPStIFi 310 (491)
T KOG0738|consen 283 SKWRGESEKLV---RLLFEMARFYAPSTIFI 310 (491)
T ss_pred hhhccchHHHH---HHHHHHHHHhCCceeeh
Confidence 99999998765 57889999999999998
No 10
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.9e-18 Score=166.78 Aligned_cols=186 Identities=16% Similarity=0.232 Sum_probs=125.1
Q ss_pred HHHHhhchhhhhhHHHHHHhhccccceeeeecccceeeeeeeecccccccchhHHHHHhCCCcchhhcccCCCCcccchh
Q 012671 253 KWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLS 332 (458)
Q Consensus 253 ~~l~~i~~~~~~lg~gl~~ll~D~dklv~~v~g~t~Lavgvyta~~~~~v~~~~~e~~Lg~p~lvRe~sr~~~~~~~~l~ 332 (458)
..+..+..+.-.+|. +..+++|..-++.+.++. -..+ .+.+|+++-+-.|...--.........+++.
T Consensus 97 ~~vd~lRGtPmsvg~-leEiidd~haivst~~g~-e~Yv----------~IlSfVdKdlLepgcsvll~~k~~avvGvL~ 164 (440)
T KOG0726|consen 97 SKVDDLRGTPMSVGT-LEEIIDDNHAIVSTSVGS-EYYV----------SILSFVDKDLLEPGCSVLLNHKVHAVVGVLQ 164 (440)
T ss_pred hHHHhhcCCcccccc-HHHHhcCCceEEecccCc-hhee----------eeeeeccHhhcCCCCeeeeccccceEEEEec
Confidence 566777777778787 445665543333332221 1112 2566777655555442222222222345555
Q ss_pred hhhHHHhhhc-ccCCCCCCCCCCCCCccccCChHHHHHHHHHHHHH-HhhhhhcCCCcceeeecCCCCChHHHHHHHHHH
Q 012671 333 QAMNKVIRNK-TSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKAT-ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 333 ~~~~~l~~~~-~~~~~~~~~~~~~~~~dvi~~~~l~~~l~~l~~~~-~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
..++.++..| ...+|..++.+..+++..| .++++.++-..... .+...+..|+++|+|||+||||||+||+++|+.
T Consensus 165 d~~dpmv~vmK~eKaP~Ety~diGGle~Qi--QEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 165 DDTDPMVSVMKVEKAPQETYADIGGLESQI--QEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred cCCCccceeeecccCchhhhcccccHHHHH--HHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 5555555555 5666666666666666444 44555444333333 345677899999999999999999999999999
Q ss_pred hCcceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 411 SEEMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 411 ~g~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
...+|+.++ +|+++.+|+|++.+ .|+.+|+.++.++|+|+||
T Consensus 243 TSATFlRvv---GseLiQkylGdGpk---lvRqlF~vA~e~apSIvFi 284 (440)
T KOG0726|consen 243 TSATFLRVV---GSELIQKYLGDGPK---LVRELFRVAEEHAPSIVFI 284 (440)
T ss_pred cchhhhhhh---hHHHHHHHhccchH---HHHHHHHHHHhcCCceEEe
Confidence 999999999 99999999998855 5667888999999999997
No 11
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.4e-18 Score=174.13 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=89.9
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHh----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
....|+||-|.++.+..|++++.+..+ ++.++..|++|||.||||||||+||+++|.+.|.||+.++ +|++-+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s---GSEFdE 375 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS---GSEFDE 375 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEecc---ccchhh
Confidence 355799999999999999988887554 5667788999999999999999999999999999999999 999999
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.|+|.+.+ .++.||+.+++++||||||
T Consensus 376 m~VGvGAr---RVRdLF~aAk~~APcIIFI 402 (752)
T KOG0734|consen 376 MFVGVGAR---RVRDLFAAAKARAPCIIFI 402 (752)
T ss_pred hhhcccHH---HHHHHHHHHHhcCCeEEEE
Confidence 99998855 5668999999999999998
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2e-17 Score=173.70 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=87.2
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHH-----HhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKAT-----ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRS 426 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~-----~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~ 426 (458)
-+...|+||.+..++...+...+.+. .+...+..++.|||||||||||||+|||++|+++|+.|+.+. ++++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK---GPEL 581 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVK---GPEL 581 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeec---CHHH
Confidence 36778999999998888887766652 334556688999999999999999999999999999999999 9999
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 427 MRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 427 ~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+++|+||+.+ .++.+|..++.++|||||.
T Consensus 582 lNkYVGESEr---AVR~vFqRAR~saPCVIFF 610 (802)
T KOG0733|consen 582 LNKYVGESER---AVRQVFQRARASAPCVIFF 610 (802)
T ss_pred HHHHhhhHHH---HHHHHHHHhhcCCCeEEEe
Confidence 9999999965 5567788899999999994
No 13
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.1e-17 Score=175.45 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=89.8
Q ss_pred CCCCCCCCccccCChHHHHHHHHHHHHH-----HhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccch
Q 012671 350 PVEAIKNNGDIILHPSLQRRIQHLAKAT-----ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLP 424 (458)
Q Consensus 350 ~~~~~~~~~dvi~~~~l~~~l~~l~~~~-----~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~s 424 (458)
..-+..+|+||.|.++++..+.+.+.|+ .+.+.+..|+++||||||||||||++|++||++++++|+.+. ++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk---gp 502 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK---GP 502 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc---CH
Confidence 3457789999999999999888777653 234555699999999999999999999999999999999999 99
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 425 RSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 425 e~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+++++|+|++++ .++.+|+.++.++|||||.
T Consensus 503 EL~sk~vGeSEr---~ir~iF~kAR~~aP~IiFf 533 (693)
T KOG0730|consen 503 ELFSKYVGESER---AIREVFRKARQVAPCIIFF 533 (693)
T ss_pred HHHHHhcCchHH---HHHHHHHHHhhcCCeEEeh
Confidence 999999999965 5667888999999999995
No 14
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.3e-17 Score=170.50 Aligned_cols=100 Identities=22% Similarity=0.204 Sum_probs=87.5
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHh----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
+...|.|+.|.+.....|..++.+..+ ...+..|++|||||||||||||+||.+||+++|++|+.++ .+++++
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~is---ApeivS 261 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS---APEIVS 261 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeec---chhhhc
Confidence 355789999888888888777776443 3456699999999999999999999999999999999999 999999
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
++.|++.+ .++.+|+.+..++||||||
T Consensus 262 GvSGESEk---kiRelF~~A~~~aPcivFi 288 (802)
T KOG0733|consen 262 GVSGESEK---KIRELFDQAKSNAPCIVFI 288 (802)
T ss_pred ccCcccHH---HHHHHHHHHhccCCeEEEe
Confidence 99999976 4568999999999999997
No 15
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.3e-17 Score=175.16 Aligned_cols=103 Identities=19% Similarity=0.207 Sum_probs=92.4
Q ss_pred CCCCCCCCccccCChHHHHHHHHHHHHHHhhhh----hcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchh
Q 012671 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPR 425 (458)
Q Consensus 350 ~~~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~----~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se 425 (458)
..++...|+||.|.++++..|.++..+..|... +..+|+++||+||||||||+|||++|.+.|.||+.++ +|+
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svS---GSE 379 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVS---GSE 379 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeec---hHH
Confidence 345668999999999999999999999877654 4478999999999999999999999999999999999 999
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 426 SMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 426 ~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+++.+.|.... .+..||..++.++||||||
T Consensus 380 FvE~~~g~~as---rvr~lf~~ar~~aP~iifi 409 (774)
T KOG0731|consen 380 FVEMFVGVGAS---RVRDLFPLARKNAPSIIFI 409 (774)
T ss_pred HHHHhcccchH---HHHHHHHHhhccCCeEEEe
Confidence 99999997743 5668999999999999997
No 16
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=7e-17 Score=157.60 Aligned_cols=104 Identities=16% Similarity=0.267 Sum_probs=89.2
Q ss_pred CCCCCCCCCccccCChHHHHHHHHHHHH----HHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccch
Q 012671 349 GPVEAIKNNGDIILHPSLQRRIQHLAKA----TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLP 424 (458)
Q Consensus 349 ~~~~~~~~~~dvi~~~~l~~~l~~l~~~----~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~s 424 (458)
....+...|+||.|.+..++.|...+.. .........|+++|||||||||||+.||+++|.+.+.+|+.++ .|
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS---SS 200 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS---SS 200 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee---hH
Confidence 3456778899999999999988877664 3334445689999999999999999999999999999999999 89
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 425 RSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 425 e~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+++++|+|++.+... -||.+++.+.|+||||
T Consensus 201 DLvSKWmGESEkLVk---nLFemARe~kPSIIFi 231 (439)
T KOG0739|consen 201 DLVSKWMGESEKLVK---NLFEMARENKPSIIFI 231 (439)
T ss_pred HHHHHHhccHHHHHH---HHHHHHHhcCCcEEEe
Confidence 999999999987665 5677789999999998
No 17
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.9e-16 Score=155.34 Aligned_cols=180 Identities=19% Similarity=0.271 Sum_probs=112.9
Q ss_pred HHHHHhhchhhhhhHHHHHHhhccccceeeeecccceeeeeee------ecccccccchhHHHHHhCCCcchhhcccCCC
Q 012671 252 EKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIY------TTREGARVTWGYVNRILGQPSLIRESSIGKF 325 (458)
Q Consensus 252 ~~~l~~i~~~~~~lg~gl~~ll~D~dklv~~v~g~t~Lavgvy------ta~~~~~v~~~~~e~~Lg~p~lvRe~sr~~~ 325 (458)
+.-+.+++..+..+|+.++.+ +.++|++......-.-+|+. ....|+++...... +
T Consensus 44 end~kslqsvg~~~gevlk~l--~~~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~lditt----------------l 105 (388)
T KOG0651|consen 44 ENDLKSLQSVGQIIGEVLKQL--EDEKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITT----------------L 105 (388)
T ss_pred cchHHHhhhcCchhHHHHhhc--cccceEeecCCCCcEEEEcccccchhhhccCceeeeeeee----------------e
Confidence 344567777777788877665 55677776622111112222 13344444443222 1
Q ss_pred CcccchhhhhHHHhhhcccCCC-CCCCCCCCCCccccCChHHHHHHHH-HHHHHHhhhhhcCCCcceeeecCCCCChHHH
Q 012671 326 PWSGLLSQAMNKVIRNKTSAGT-AGPVEAIKNNGDIILHPSLQRRIQH-LAKATANTKIHQAPFRNMLFYGPPGTGKTMV 403 (458)
Q Consensus 326 ~~~~~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~dvi~~~~l~~~l~~-l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~l 403 (458)
+....+.+..+ ++++|+...+ ..++....++.+++ +++.+.|.- |.+.......+..||.+++||||||||||++
T Consensus 106 tIm~~lprevd-~vy~m~~e~~~~~s~~~~ggl~~qi--relre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTll 182 (388)
T KOG0651|consen 106 TIMRGLPREVD-LVYNMSHEDPRNISFENVGGLFYQI--RELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLL 182 (388)
T ss_pred ehhcccchHHH-HHHHhhhcCccccCHHHhCChHHHH--HHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHH
Confidence 11222334444 6667753332 22333333333232 333333221 1122223345779999999999999999999
Q ss_pred HHHHHHHhCcceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 404 AREIARKSEEMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 404 AkaLA~~~g~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
|++++..+|..|+.|+ .++++++|+||..+ .|+.+|.+++...||||||
T Consensus 183 a~~Vaa~mg~nfl~v~---ss~lv~kyiGEsaR---lIRemf~yA~~~~pciifm 231 (388)
T KOG0651|consen 183 ARAVAATMGVNFLKVV---SSALVDKYIGESAR---LIRDMFRYAREVIPCIIFM 231 (388)
T ss_pred HHHHHHhcCCceEEee---HhhhhhhhcccHHH---HHHHHHHHHhhhCceEEee
Confidence 9999999999999999 89999999999954 5678999999999999997
No 18
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.8e-16 Score=167.62 Aligned_cols=100 Identities=17% Similarity=0.241 Sum_probs=82.9
Q ss_pred CCCCCccccCChHHHHHHHHHHHHH-Hh---hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKAT-AN---TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~-~~---~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
+...|+||.|.++++..|.+-+... .+ ...+-.+..|||||||||||||++|||+|.++.+.|+.+. ++++++
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVK---GPELLN 743 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVK---GPELLN 743 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeec---CHHHHH
Confidence 6778999999999998777665542 12 2233344569999999999999999999999999999999 999999
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+|+|+++.+.| ..|..||..+|||||.
T Consensus 744 MYVGqSE~NVR---~VFerAR~A~PCVIFF 770 (953)
T KOG0736|consen 744 MYVGQSEENVR---EVFERARSAAPCVIFF 770 (953)
T ss_pred HHhcchHHHHH---HHHHHhhccCCeEEEe
Confidence 99999987766 5566788899999994
No 19
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.9e-16 Score=154.05 Aligned_cols=102 Identities=24% Similarity=0.299 Sum_probs=84.8
Q ss_pred CCCCCCCccccCChHHHHHHHHHHHHHH----hhh--hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccch
Q 012671 351 VEAIKNNGDIILHPSLQRRIQHLAKATA----NTK--IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLP 424 (458)
Q Consensus 351 ~~~~~~~~dvi~~~~l~~~l~~l~~~~~----~~~--~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~s 424 (458)
......|+|+.+.++++..+.+++.... +.. .-..|++||||||||||||||+|+++|.++|..|+.|. ++
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~---~s 161 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS---VS 161 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee---cc
Confidence 3466789999999998888888776532 111 12378899999999999999999999999999999999 99
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 425 RSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 425 e~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.++++|+|++.+....+|.+ +.+.+||||||
T Consensus 162 ~lt~KWfgE~eKlv~AvFsl---AsKl~P~iIFI 192 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSL---ASKLQPSIIFI 192 (386)
T ss_pred ccchhhHHHHHHHHHHHHhh---hhhcCcceeeh
Confidence 99999999998877765555 66899999997
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.60 E-value=1.3e-14 Score=150.99 Aligned_cols=102 Identities=25% Similarity=0.320 Sum_probs=84.6
Q ss_pred CCCCCCCccccCChHHHHHHHHHHHHHH-----hhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchh
Q 012671 351 VEAIKNNGDIILHPSLQRRIQHLAKATA-----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPR 425 (458)
Q Consensus 351 ~~~~~~~~dvi~~~~l~~~l~~l~~~~~-----~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se 425 (458)
..+...|+||.|.+..+..+...+.... +...+..|++++|||||||||||++|++||++++.+|+.+. .++
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~---~s~ 214 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV---GSE 214 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe---hHH
Confidence 3567789999999998888887776432 22334578899999999999999999999999999999888 788
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 426 SMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 426 ~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+..+|+|+..+. +..+|..++..+||||||
T Consensus 215 l~~k~~ge~~~~---lr~lf~~A~~~~P~ILfI 244 (398)
T PTZ00454 215 FVQKYLGEGPRM---VRDVFRLARENAPSIIFI 244 (398)
T ss_pred HHHHhcchhHHH---HHHHHHHHHhcCCeEEEE
Confidence 999999987554 456777888999999996
No 21
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2e-14 Score=138.39 Aligned_cols=102 Identities=23% Similarity=0.310 Sum_probs=77.3
Q ss_pred CCCCCCCccccCChHHHH-HHHHHHH----HHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchh
Q 012671 351 VEAIKNNGDIILHPSLQR-RIQHLAK----ATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPR 425 (458)
Q Consensus 351 ~~~~~~~~dvi~~~~l~~-~l~~l~~----~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se 425 (458)
..+...++||.|.+.-.. .++.+.. ...+.+.+..||+++|+|||||||||++|++.|.+.+.+|+.+. ++.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLA---gPQ 240 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLA---GPQ 240 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhc---chH
Confidence 345556666654432222 2222221 13445567799999999999999999999999999999999999 899
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 426 SMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 426 ~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
++..|+|.+.+..+ ..|..++..+||||||
T Consensus 241 LVQMfIGdGAkLVR---DAFaLAKEkaP~IIFI 270 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVR---DAFALAKEKAPTIIFI 270 (424)
T ss_pred HHhhhhcchHHHHH---HHHHHhhccCCeEEEE
Confidence 99999999977665 5555677789999998
No 22
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.3e-15 Score=162.91 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=84.7
Q ss_pred ccCChHHHHHHH-HHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh----------
Q 012671 360 IILHPSLQRRIQ-HLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR---------- 428 (458)
Q Consensus 360 vi~~~~l~~~l~-~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~---------- 428 (458)
|+||++....+. .+..+.........|..++||.||+|+|||.||++||..++-+-..|.++|||+||+
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGa 572 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGA 572 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCC
Confidence 899999888554 444556666777788899999999999999999999999998888889999999999
Q ss_pred --hhhh--------hhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 --YLIG--------RRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 --~~~g--------e~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+|+| +..++.+++++|||+++++||.|+.|
T Consensus 573 PPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~ni 612 (786)
T COG0542 573 PPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNL 612 (786)
T ss_pred CCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHH
Confidence 4455 67788899999999999999998753
No 23
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.1e-15 Score=157.50 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=90.4
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhhh----hcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~----~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
.....|.||.|.++.+..+..++....+..+ +..-|+++||+||||||||+||+++|.+.+.||+.++ +|+++
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iS---GS~FV 220 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS---GSDFV 220 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceecc---chhhh
Confidence 4567899999999999999999998776543 3466799999999999999999999999999999999 99999
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+.|+|.... +++.||..+++++||||||
T Consensus 221 emfVGvGAs---RVRdLF~qAkk~aP~IIFI 248 (596)
T COG0465 221 EMFVGVGAS---RVRDLFEQAKKNAPCIIFI 248 (596)
T ss_pred hhhcCCCcH---HHHHHHHHhhccCCCeEEE
Confidence 999998855 5668999999999999997
No 24
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8.5e-15 Score=141.26 Aligned_cols=103 Identities=17% Similarity=0.298 Sum_probs=87.5
Q ss_pred CCCCCCCCccccCChHHHHHHHHHHHH-----HHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccch
Q 012671 350 PVEAIKNNGDIILHPSLQRRIQHLAKA-----TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLP 424 (458)
Q Consensus 350 ~~~~~~~~~dvi~~~~l~~~l~~l~~~-----~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~s 424 (458)
...+...++||.|..+-.+.++..... -.+...+..|++++|+|||||||||+.|+++|+..+..|+.+. +|
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvi---gs 245 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVI---GS 245 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeeh---hH
Confidence 345677888898888777777766654 3445677899999999999999999999999999999999999 99
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 425 RSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 425 e~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+++.+|+|++.+ .++.+|.+++...-||||.
T Consensus 246 elvqkyvgegar---mvrelf~martkkaciiff 276 (435)
T KOG0729|consen 246 ELVQKYVGEGAR---MVRELFEMARTKKACIIFF 276 (435)
T ss_pred HHHHHHhhhhHH---HHHHHHHHhcccceEEEEe
Confidence 999999999965 4567888899999999994
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.4e-14 Score=154.95 Aligned_cols=103 Identities=19% Similarity=0.269 Sum_probs=86.4
Q ss_pred CCCCCCCCccccCChHHHHHHHHHHHHHHhh-h----hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccch
Q 012671 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANT-K----IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLP 424 (458)
Q Consensus 350 ~~~~~~~~~dvi~~~~l~~~l~~l~~~~~~~-~----~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~s 424 (458)
...+...|+++.|....+..+...+.+.... . .+..|++++|||||||||||++|+++|.+++.+|+.+. ++
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~---~~ 310 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK---GS 310 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee---CH
Confidence 3456788999998888888877777664322 1 15577889999999999999999999999999999999 88
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 425 RSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 425 e~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+++++|+|++.++ +..+|..+++.+||||||
T Consensus 311 ~l~sk~vGesek~---ir~~F~~A~~~~p~iiFi 341 (494)
T COG0464 311 ELLSKWVGESEKN---IRELFEKARKLAPSIIFI 341 (494)
T ss_pred HHhccccchHHHH---HHHHHHHHHcCCCcEEEE
Confidence 9999999999765 456788899999999997
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.51 E-value=1.2e-13 Score=145.08 Aligned_cols=101 Identities=23% Similarity=0.350 Sum_probs=81.2
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHH-H----hhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKAT-A----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRS 426 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~-~----~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~ 426 (458)
.+...|+||.|.+.....+..++... . +...+..|++++|||||||||||++|++||.+++.+|+.+. .+++
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~---~seL 253 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVV---GSEL 253 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe---cchh
Confidence 45678899988888777777666532 1 22334578899999999999999999999999999998887 7888
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 427 MRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 427 ~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+.+|+|+..+. +..+|..++...||||||
T Consensus 254 ~~k~~Ge~~~~---vr~lF~~A~~~~P~ILfI 282 (438)
T PTZ00361 254 IQKYLGDGPKL---VRELFRVAEENAPSIVFI 282 (438)
T ss_pred hhhhcchHHHH---HHHHHHHHHhCCCcEEeH
Confidence 99999987544 556777888899999996
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.50 E-value=3.3e-13 Score=140.39 Aligned_cols=101 Identities=23% Similarity=0.322 Sum_probs=82.6
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHH-----hhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATA-----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRS 426 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~-----~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~ 426 (458)
.+...|+||+|.++..+.+..++.... ....+..|++++|||||||||||++|+++|.+++.+|+.++ ++++
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~---~~~l 201 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV---GSEL 201 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEee---hHHH
Confidence 356788999999888887777665422 22344578899999999999999999999999999999988 8889
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 427 MRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 427 ~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
..+|+|+..+. +..+|..++...||||||
T Consensus 202 ~~~~~g~~~~~---i~~~f~~a~~~~p~Ilfi 230 (389)
T PRK03992 202 VQKFIGEGARL---VRELFELAREKAPSIIFI 230 (389)
T ss_pred hHhhccchHHH---HHHHHHHHHhcCCeEEEE
Confidence 99999987554 456778888899999996
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.48 E-value=7.6e-14 Score=148.45 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=80.6
Q ss_pred CCCCCccccCChHHHHHHHHHHHHH--HhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKAT--ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYL 430 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~--~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~ 430 (458)
+...|+||.|.+.++..+....... .....+..+++++|||||||||||++|++||.++|++++.+. ++.+..+|
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~---~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD---VGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE---hHHhcccc
Confidence 4557899999988888776543321 112234467899999999999999999999999999999998 88899999
Q ss_pred hhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 431 IGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 431 ~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+|++..+. ..+|+.++..+||||||
T Consensus 300 vGese~~l---~~~f~~A~~~~P~IL~I 324 (489)
T CHL00195 300 VGESESRM---RQMIRIAEALSPCILWI 324 (489)
T ss_pred cChHHHHH---HHHHHHHHhcCCcEEEe
Confidence 99886654 45677788899999997
No 29
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.2e-13 Score=147.46 Aligned_cols=100 Identities=21% Similarity=0.213 Sum_probs=83.8
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHH-hhhhh----cCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATA-NTKIH----QAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~-~~~~~----~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
++-+|+||.|..+.+..+.+.+.|+. +.... .....|||||||||||||+||-++|..+++.|+.+. +++++
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvK---GPElL 738 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVK---GPELL 738 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEec---CHHHH
Confidence 44789999999999999998888743 22221 133459999999999999999999999999999999 99999
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.+|+|.++++. +.+|..++.+.|||+|.
T Consensus 739 ~KyIGaSEq~v---R~lF~rA~~a~PCiLFF 766 (952)
T KOG0735|consen 739 SKYIGASEQNV---RDLFERAQSAKPCILFF 766 (952)
T ss_pred HHHhcccHHHH---HHHHHHhhccCCeEEEe
Confidence 99999886654 57788899999999994
No 30
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.45 E-value=1.6e-13 Score=139.33 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=62.2
Q ss_pred hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhh-----hcCCcee
Q 012671 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMH-----FYASATV 456 (458)
Q Consensus 382 ~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~-----~~~p~ii 456 (458)
.+..++++++||||||||||++|++||.++|.+++.|+ .++++++|+|+..++.+ .+|+.|+ +.+||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vs---a~eL~sk~vGEsEk~IR---~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMS---AGELESENAGEPGKLIR---QRYREAADIIKKKGKMSCL 216 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE---HHHhhcCcCCcHHHHHH---HHHHHHHHHhhccCCCeEE
Confidence 45688999999999999999999999999999999999 99999999999987666 4555554 4579999
Q ss_pred eC
Q 012671 457 YI 458 (458)
Q Consensus 457 fi 458 (458)
||
T Consensus 217 FI 218 (413)
T PLN00020 217 FI 218 (413)
T ss_pred EE
Confidence 97
No 31
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.2e-13 Score=142.69 Aligned_cols=101 Identities=21% Similarity=0.287 Sum_probs=87.6
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHh----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
.....|+|+.|...++..+...+.+... ...-..|.+++||+||||||||||++|||.+++..|+.++ .+++.
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iS---assLt 223 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNIS---ASSLT 223 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeecc---HHHhh
Confidence 3557899999988999988888887544 2223477899999999999999999999999999999999 89999
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
++|+|+..+ .++.+|..+++.+|+||||
T Consensus 224 sK~~Ge~eK---~vralf~vAr~~qPsvifi 251 (428)
T KOG0740|consen 224 SKYVGESEK---LVRALFKVARSLQPSVIFI 251 (428)
T ss_pred hhccChHHH---HHHHHHHHHHhcCCeEEEe
Confidence 999999844 6778999999999999997
No 32
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.44 E-value=2.7e-13 Score=145.29 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=84.9
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhh----hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~----~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
.+...|+||+|.++++..+..++....+.. .+..+++|+|||||||||||++|++||.+++.+|+.++ .+++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~---~~~~~ 125 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS---GSDFV 125 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc---HHHHH
Confidence 467789999999999998888777644322 34577889999999999999999999999999999988 78888
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+.+.|.+.. .+..+|..++..+||||||
T Consensus 126 ~~~~g~~~~---~l~~~f~~a~~~~p~Il~i 153 (495)
T TIGR01241 126 EMFVGVGAS---RVRDLFEQAKKNAPCIIFI 153 (495)
T ss_pred HHHhcccHH---HHHHHHHHHHhcCCCEEEE
Confidence 999997754 4556788888999999997
No 33
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.40 E-value=5.2e-13 Score=149.40 Aligned_cols=100 Identities=21% Similarity=0.316 Sum_probs=84.7
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHh-----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~-----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
+...|++|+|.+.++..|...+.+... .+.+..+++++|||||||||||++|++||.+++.+|+.+. +++++
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~---~~~l~ 524 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR---GPEIL 524 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe---hHHHh
Confidence 456899999999999988887765321 2234567889999999999999999999999999999988 89999
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
++|+|++.+ .+..+|+.++..+||||||
T Consensus 525 ~~~vGese~---~i~~~f~~A~~~~p~iifi 552 (733)
T TIGR01243 525 SKWVGESEK---AIREIFRKARQAAPAIIFF 552 (733)
T ss_pred hcccCcHHH---HHHHHHHHHHhcCCEEEEE
Confidence 999998865 4557788899999999996
No 34
>CHL00176 ftsH cell division protein; Validated
Probab=99.39 E-value=8.7e-13 Score=144.52 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=85.8
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhhh----hcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~----~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
.....|+||+|.++.+..+..++....+... +..+++++|||||||||||++|++||.+++.+|+.++ ++++.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is---~s~f~ 253 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS---GSEFV 253 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeecc---HHHHH
Confidence 4567899999999999999988877655444 4567889999999999999999999999999999988 78888
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+.+.|.... .+..+|..++.+.||||||
T Consensus 254 ~~~~g~~~~---~vr~lF~~A~~~~P~ILfI 281 (638)
T CHL00176 254 EMFVGVGAA---RVRDLFKKAKENSPCIVFI 281 (638)
T ss_pred HHhhhhhHH---HHHHHHHHHhcCCCcEEEE
Confidence 888886643 4567888899999999997
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.35 E-value=6.3e-12 Score=129.62 Aligned_cols=101 Identities=24% Similarity=0.343 Sum_probs=80.6
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHH-h----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATA-N----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRS 426 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~-~----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~ 426 (458)
.+...|+|+.|.+...+.+...+.... + ...+..|++++|||||||||||++|+++|.+++.+|+.+. .+++
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~---~~~l 192 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV---GSEL 192 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc---hHHH
Confidence 456688899999888887776665321 1 2234467889999999999999999999999999998887 7888
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 427 MRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 427 ~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
...|+|+... .+..+|..++...||||||
T Consensus 193 ~~~~~g~~~~---~i~~~f~~a~~~~p~il~i 221 (364)
T TIGR01242 193 VRKYIGEGAR---LVREIFELAKEKAPSIIFI 221 (364)
T ss_pred HHHhhhHHHH---HHHHHHHHHHhcCCcEEEh
Confidence 8899997654 4456777888889999986
No 36
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.35 E-value=9.7e-12 Score=140.96 Aligned_cols=221 Identities=16% Similarity=0.151 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHhhhHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 012671 155 DELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEE---QIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHE 231 (458)
Q Consensus 155 D~L~rkr~q~e~e~~~~~~e~~~~~qees~~rqE~~r~~~e~---~l~~lr~~~e~e~~~l~~~~~~~k~~~e~~~r~~~ 231 (458)
+.|+++..+++.+.+.+.++. +..+..|++.++.+.++ ++..++.+|..++.++....+..+.+.+++.++++
T Consensus 413 ~rLer~l~~L~~E~e~l~~e~----~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~ 488 (857)
T PRK10865 413 DRLDRRIIQLKLEQQALMKES----DEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQ 488 (857)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 667777777777777776553 22344566665555443 66778888998888888877877788888888888
Q ss_pred HHhhcChhHHHHHHHHHhhhHHHHHhhchhhhhhHHHHHHhhccccceeeeecccceeeeeeeecccccccchhHHHHHh
Q 012671 232 AKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRIL 311 (458)
Q Consensus 232 ~r~n~D~~le~~~~~a~~~r~~~l~~i~~~~~~lg~gl~~ll~D~dklv~~v~g~t~Lavgvyta~~~~~v~~~~~e~~L 311 (458)
+..+.|.. .+.+..+..++.+........... .....++...++. ..+...+.++.
T Consensus 489 a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~--------------~~i~~vv~~~t 544 (857)
T PRK10865 489 ARRVGDLA------RMSELQYGKIPELEKQLAAATQLE----GKTMRLLRNKVTD--------------AEIAEVLARWT 544 (857)
T ss_pred HHhhhhhh------hHHHhhhhhhHHHHHHHHHHHhhh----ccccccccCccCH--------------HHHHHHHHHHH
Confidence 88888873 344444444444332111110000 0011122111111 12233344444
Q ss_pred CCCcchhhcccCCCCcc--cchhhhhHHHhhhcccCCCCCCCCCCCCCccccCChHHHHHHHHHHHHHH-hhhhhcCCCc
Q 012671 312 GQPSLIRESSIGKFPWS--GLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATA-NTKIHQAPFR 388 (458)
Q Consensus 312 g~p~lvRe~sr~~~~~~--~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~dvi~~~~l~~~l~~l~~~~~-~~~~~~~p~r 388 (458)
|-|.. ++... ..+.+.... -+..|+|++.....|...+.... .......|..
T Consensus 545 gip~~-------~~~~~~~~~l~~l~~~------------------l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~ 599 (857)
T PRK10865 545 GIPVS-------RMLESEREKLLRMEQE------------------LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIG 599 (857)
T ss_pred CCCch-------hhhhhHHHHHHHHHHH------------------hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCc
Confidence 54433 10000 001111111 23448899887776554444322 2222234445
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
.+||+||||||||++|++|+..+..+...+..++++++.+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 7999999999999999999998743222222333665543
No 37
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.31 E-value=3.9e-12 Score=135.66 Aligned_cols=104 Identities=18% Similarity=0.261 Sum_probs=75.6
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHH-----hhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceee-------ec
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATA-----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHL-------LV 419 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~-----~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~-------~~ 419 (458)
.+...|+||.|.+...+.+...+.... +...+..|++++|||||||||||++|+++|++++.+++. ..
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 356789999988888887777665422 222345678999999999999999999999999765221 11
Q ss_pred cccchhhhhhhhhhhhhhhhhhHHHHHHhhh----cCCceeeC
Q 012671 420 HRLLPRSMRYLIGRRNQRKACCFLLTRLMHF----YASATVYI 458 (458)
Q Consensus 420 ~~~~se~~~~~~ge~~~~~~~i~~lf~~a~~----~~p~iifi 458 (458)
.+..++++.+|+|++.+..+. +|+.++. ..||||||
T Consensus 256 ~v~~~eLl~kyvGete~~ir~---iF~~Ar~~a~~g~p~IIfI 295 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRL---IFQRAREKASDGRPVIVFF 295 (512)
T ss_pred eccchhhcccccchHHHHHHH---HHHHHHHHhhcCCCceEEE
Confidence 233688899999998765554 4455544 37999996
No 38
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.30 E-value=2.5e-12 Score=149.73 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=58.3
Q ss_pred cCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhh---------------------------------
Q 012671 384 QAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYL--------------------------------- 430 (458)
Q Consensus 384 ~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~--------------------------------- 430 (458)
..|++||||+||||||||+||++||.+++++|+.|+ ++++++++
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsIS---gs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e 1703 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVF---LNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEE---HHHHhhcccccccccccccccccccccccccccccchhhhh
Confidence 467899999999999999999999999999999998 67766544
Q ss_pred --------hhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 431 --------IGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 431 --------~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+|++.++ .++..+|+.|+..+||||||
T Consensus 1704 ~~n~~~~~m~~~e~~-~rIr~lFelARk~SPCIIFI 1738 (2281)
T CHL00206 1704 MMNALTMDMMPKIDR-FYITLQFELAKAMSPCIIWI 1738 (2281)
T ss_pred hcchhhhhhhhhhhH-HHHHHHHHHHHHCCCeEEEE
Confidence 2222221 24778999999999999997
No 39
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.24 E-value=8.4e-11 Score=133.58 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=61.0
Q ss_pred cccCChHHHHHHHHHHHHH-HhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhh-------
Q 012671 359 DIILHPSLQRRIQHLAKAT-ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYL------- 430 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~-~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~------- 430 (458)
.|+|++...+.+...+... ........|...+||+||||||||++|++||..++.+...+..++++++++.+
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g 645 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIG 645 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcC
Confidence 3889998887665544432 22223335566899999999999999999999885433333344466654422
Q ss_pred -----hhh--------hhhhhhhhHHHHHHhhhcCCce
Q 012671 431 -----IGR--------RNQRKACCFLLTRLMHFYASAT 455 (458)
Q Consensus 431 -----~ge--------~~~~~~~i~~lf~~a~~~~p~i 455 (458)
+|. ..+..++++++|+++.+++|.+
T Consensus 646 ~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v 683 (852)
T TIGR03346 646 APPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDV 683 (852)
T ss_pred CCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHH
Confidence 221 1123345667777777777665
No 40
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.16 E-value=5.9e-11 Score=132.99 Aligned_cols=100 Identities=22% Similarity=0.353 Sum_probs=82.2
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHh-----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~-----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
+...|+||+|.......+..++..... ...+..|++++|||||||||||+++++||++++.+++.++ +++++
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~---~~~i~ 249 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN---GPEIM 249 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe---cHHHh
Confidence 457899999999988888877765321 2234467899999999999999999999999999998888 88889
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.+|.|+.... +..+|..+....|+||||
T Consensus 250 ~~~~g~~~~~---l~~lf~~a~~~~p~il~i 277 (733)
T TIGR01243 250 SKYYGESEER---LREIFKEAEENAPSIIFI 277 (733)
T ss_pred cccccHHHHH---HHHHHHHHHhcCCcEEEe
Confidence 9999977543 456778888899999996
No 41
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.15 E-value=1.9e-10 Score=130.25 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=64.2
Q ss_pred ccCChHHHHHHHHHHHHH-HhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhh---------
Q 012671 360 IILHPSLQRRIQHLAKAT-ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRY--------- 429 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~-~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~--------- 429 (458)
|+|+++..+.+...+... ........|...+||+||||||||++|++||..++-+.-.+..+++++|.+.
T Consensus 568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~ 647 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGS 647 (852)
T ss_pred EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCC
Confidence 899998888655444432 2222223444568999999999999999999999543333444457777553
Q ss_pred ---hhh--------hhhhhhhhhHHHHHHhhhcCCcee
Q 012671 430 ---LIG--------RRNQRKACCFLLTRLMHFYASATV 456 (458)
Q Consensus 430 ---~~g--------e~~~~~~~i~~lf~~a~~~~p~ii 456 (458)
|+| +..+..++++++||++++++|.+.
T Consensus 648 ~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~ 685 (852)
T TIGR03345 648 PPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVL 685 (852)
T ss_pred CCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHH
Confidence 333 222334677778888888887653
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.14 E-value=1.2e-10 Score=111.47 Aligned_cols=65 Identities=32% Similarity=0.474 Sum_probs=46.7
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeecc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVH 420 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~ 420 (458)
.+..|+|+|||+++...+.-+.... +..+.++.++|||||||||||+||..||+++|.+|...++
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa---~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg 83 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAA---KKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSG 83 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHH---HCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEEC
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHH---HhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccc
Confidence 3458999999999998776554443 3334566799999999999999999999999999988773
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.13 E-value=7.5e-11 Score=102.37 Aligned_cols=63 Identities=25% Similarity=0.276 Sum_probs=53.4
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhhhcC-CceeeC
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMHFYA-SATVYI 458 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~~~~-p~iifi 458 (458)
||||||||||||++++.||+.++.+++.+. ++++...+.+...+ .+..+|+.+.... ||||||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~---~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~vl~i 64 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEID---GSELISSYAGDSEQ---KIRDFFKKAKKSAKPCVLFI 64 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEE---TTHHHTSSTTHHHH---HHHHHHHHHHHTSTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccc---cccccccccccccc---ccccccccccccccceeeee
Confidence 689999999999999999999999999998 77777777776644 5566777787777 999986
No 44
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.4e-11 Score=132.86 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=77.3
Q ss_pred CCCCCccccCChHHHHHHHHHHH-----HHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeecc--ccchh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAK-----ATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVH--RLLPR 425 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~-----~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~--~~~se 425 (458)
...+|++|.|..+....+...+- ...+..-+..|++++|||||||||||+.|++||..+....-.+++ .++.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 44577777766665555544443 234455667999999999999999999999999998543333222 24788
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 426 SMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 426 ~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
..++|+|+..+ .+..+|.++++++|+|||.
T Consensus 340 ~lskwvgEaER---qlrllFeeA~k~qPSIIff 369 (1080)
T KOG0732|consen 340 CLSKWVGEAER---QLRLLFEEAQKTQPSIIFF 369 (1080)
T ss_pred hhccccCcHHH---HHHHHHHHHhccCceEEec
Confidence 99999999854 5668999999999999994
No 45
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.4e-10 Score=115.07 Aligned_cols=103 Identities=20% Similarity=0.189 Sum_probs=75.3
Q ss_pred CCccccCChHHHHHHHHHHH-HHHhhhhhc-----CCCcceeeecCCCCChHHHHHHHHHHhCc------ceeeeccccc
Q 012671 356 NNGDIILHPSLQRRIQHLAK-ATANTKIHQ-----APFRNMLFYGPPGTGKTMVAREIARKSEE------MLHLLVHRLL 423 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~-~~~~~~~~~-----~p~rnvLl~GPPGTGKT~lAkaLA~~~g~------~~~~~~~~~~ 423 (458)
-|+.++...+++.++-..+. .......+. ..-|-+|+|||||||||+|||+||+++.. .+-.|..++.
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 46677777788886554444 334444433 22467899999999999999999999843 2333666668
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 424 PRSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 424 se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.++.+||++|+.+....+|.-+++.-.-.-+.||+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 99999999999998887777777776666777764
No 46
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.5e-11 Score=136.98 Aligned_cols=289 Identities=17% Similarity=0.127 Sum_probs=175.5
Q ss_pred CCCCCCCchhhhHHH-HHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHH
Q 012671 66 PRGSGFDPEALERAA-KALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKA 144 (458)
Q Consensus 66 ~~~~~fdp~~ler~a-~a~~~l~~s~~a~~~~~~~~~~e~t~q~e~~~~~~e~~~~~~~~~~~~~~~~~ee~r~~~~~~~ 144 (458)
+.+..|..+++..++ -..+.+--+--.-.++++.. |..- ..+.
T Consensus 369 ~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~d--Ea~a---------------------~~~~------------- 412 (898)
T KOG1051|consen 369 HHGVRISDESLFSAAQLSARYITLSFLPDCAIDLED--EAAA---------------------LVKS------------- 412 (898)
T ss_pred ccCCcccccccccccchhhhhcccCcCchhcccHHH--HHHH---------------------HHhh-------------
Confidence 456778888888888 45566666555555544422 1110 0111
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhchHHHhhhHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012671 145 QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTE---EQIQAQQRLTEKERAEIERETIRVKA 221 (458)
Q Consensus 145 ~~~~~~a~y~D~L~rkr~q~e~e~~~~~~e~~~~~qees~~rqE~~r~~~e---~~l~~lr~~~e~e~~~l~~~~~~~k~ 221 (458)
+....-+-=+.++|+.++++.++..++++.+ +.+..|.. .+... ...+++...|..++..+++..-.+..
T Consensus 413 -~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d----~~~h~r~~--~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~ 485 (898)
T KOG1051|consen 413 -QAESLPPWLQNLERVDIKLQDEISELQKKWN----QALHKRPS--LESLAPSKPTQQPLSASVDSERSVIEELKLKKNS 485 (898)
T ss_pred -hhhhCCHHHHhhhhhhhhhHHHHHHHHHhhh----hhhccccc--cccccccccccccchhhhccchhHHhhhccccCC
Confidence 1112222233445555556667777776643 33333433 11111 15567888999999999999888888
Q ss_pred HHHHhhhHHHHHhhcChhHHHHHHHHHhhhHHHHHhhchhhhhhHHHHHHhhccccceeeeecccceeeeeeeecccccc
Q 012671 222 MAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGAR 301 (458)
Q Consensus 222 ~~e~~~r~~~~r~n~D~~le~~~~~a~~~r~~~l~~i~~~~~~lg~gl~~ll~D~dklv~~v~g~t~Lavgvyta~~~~~ 301 (458)
.++... +...++.+|+ ..+.+.++..++ ++...+.. | +.. +...++
T Consensus 486 ~~~~~~-~~k~~r~~d~------~~~~~l~~~~~p--------~~~~~~~~--~-~~~-----~~~~i~----------- 531 (898)
T KOG1051|consen 486 LDRNSL-LAKAHRPNDY------TRETDLRYGRIP--------DELSEKSN--D-NQG-----GESDIS----------- 531 (898)
T ss_pred cccchh-hhcccCCCCc------chhhhccccccc--------hhhhhhcc--c-ccC-----Cccchh-----------
Confidence 888888 9999999999 777788888777 11111111 1 111 112211
Q ss_pred cchhHHHHHhCCCcchhhcccCCCCcccchhhhhHHHhhhcccCCCCCCCCCCCCCccccCChHHHHHHHHHHHHHHhhh
Q 012671 302 VTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTK 381 (458)
Q Consensus 302 v~~~~~e~~Lg~p~lvRe~sr~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~ 381 (458)
..+..++|.|......+-. ..|......+ =+.|+||.++...|...+.......
T Consensus 532 ---~~~s~~tgip~~~~~~~e~-----~~l~~L~~~L------------------~~~V~gQ~eAv~aIa~AI~~sr~gl 585 (898)
T KOG1051|consen 532 ---EVVSRWTGIPVDRLAEAEA-----ERLKKLEERL------------------HERVIGQDEAVAAIAAAIRRSRAGL 585 (898)
T ss_pred ---hhhhhhcCCchhhhhhhHH-----HHHHHHHHHH------------------HhhccchHHHHHHHHHHHHhhhccc
Confidence 1222333333331110000 0011111111 0128999998887776665543221
Q ss_pred hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh---------hhhh--------hhhhhhhhhHHH
Q 012671 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR---------YLIG--------RRNQRKACCFLL 444 (458)
Q Consensus 382 ~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~---------~~~g--------e~~~~~~~i~~l 444 (458)
....|.-.+||.||.|+|||-||++||..++-+.-.|.++||++|++ +|.| +..++.+++++|
T Consensus 586 ~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVL 665 (898)
T KOG1051|consen 586 KDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVL 665 (898)
T ss_pred CCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEE
Confidence 11157789999999999999999999999998888889999998665 3333 667788999999
Q ss_pred HHHhhhcCCceee
Q 012671 445 TRLMHFYASATVY 457 (458)
Q Consensus 445 f~~a~~~~p~iif 457 (458)
|+++++.+|.+..
T Consensus 666 fdeIEkAh~~v~n 678 (898)
T KOG1051|consen 666 FEEIEKAHPDVLN 678 (898)
T ss_pred EechhhcCHHHHH
Confidence 9999999998754
No 47
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.07 E-value=2.7e-10 Score=125.68 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=82.3
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhh----hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~----~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
....|+|+.+.+....++..+........ .+...++|+||+||||||||+++++++.+++.+|+.++ +++++.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is---~~~~~~ 223 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS---GSDFVE 223 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEe---hHHhHH
Confidence 45678899999999998888887654322 23355689999999999999999999999999999988 788888
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.|+|.... .+..+|..++..+||||||
T Consensus 224 ~~~g~~~~---~~~~~f~~a~~~~P~IifI 250 (644)
T PRK10733 224 MFVGVGAS---RVRDMFEQAKKAAPCIIFI 250 (644)
T ss_pred hhhcccHH---HHHHHHHHHHhcCCcEEEe
Confidence 89897654 4556778889999999997
No 48
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.7e-10 Score=119.37 Aligned_cols=72 Identities=28% Similarity=0.471 Sum_probs=64.1
Q ss_pred hhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhhhcC-CceeeC
Q 012671 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMHFYA-SATVYI 458 (458)
Q Consensus 381 ~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~~~~-p~iifi 458 (458)
..+..|++++|+|||||||||++++++|++.|..++.++ +++++++|.|++...++ ..|..+.+++ |+||||
T Consensus 212 s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~---~peli~k~~gEte~~LR---~~f~~a~k~~~psii~I 284 (693)
T KOG0730|consen 212 SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLIN---GPELISKFPGETESNLR---KAFAEALKFQVPSIIFI 284 (693)
T ss_pred hcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecc---cHHHHHhcccchHHHHH---HHHHHHhccCCCeeEeH
Confidence 345588999999999999999999999999998888888 99999999999987665 4667788899 999997
No 49
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.00 E-value=6.1e-10 Score=109.75 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=64.0
Q ss_pred CccccCChHHHHHHHHHHHHHHhhhh---h-c---CCCcceeeecCCCCChHHHHHHHHHHh---C----cceeeecccc
Q 012671 357 NGDIILHPSLQRRIQHLAKATANTKI---H-Q---APFRNMLFYGPPGTGKTMVAREIARKS---E----EMLHLLVHRL 422 (458)
Q Consensus 357 ~~dvi~~~~l~~~l~~l~~~~~~~~~---~-~---~p~rnvLl~GPPGTGKT~lAkaLA~~~---g----~~~~~~~~~~ 422 (458)
+++++|...++..|..+..+...... . . ....|+|||||||||||++|+++|..+ | ..++.+.
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~--- 81 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE--- 81 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec---
Confidence 56689999999999988877643221 1 1 223589999999999999999999875 2 1333344
Q ss_pred chhhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 423 LPRSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 423 ~se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.++++.+|+|++.... ..+|.. ..++||||
T Consensus 82 ~~~l~~~~~g~~~~~~---~~~~~~---a~~~VL~I 111 (261)
T TIGR02881 82 RADLVGEYIGHTAQKT---REVIKK---ALGGVLFI 111 (261)
T ss_pred HHHhhhhhccchHHHH---HHHHHh---ccCCEEEE
Confidence 6788888998765433 233333 34677775
No 50
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.93 E-value=7.7e-10 Score=108.32 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=71.4
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhhh
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIGR 433 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ge 433 (458)
+..|+++||++.+++.+.-++.+ .+..+....|+|||||||.|||+||..+|+++|..+-..++..+ +--..+.+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~A---Ak~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l-eK~gDlaai 97 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKA---AKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL-EKPGDLAAI 97 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHH---HHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-cChhhHHHH
Confidence 55799999999999988765554 44556778899999999999999999999999999977663222 111223333
Q ss_pred hhhhhhhhHHHHHHhhhcCCce
Q 012671 434 RNQRKACCFLLTRLMHFYASAT 455 (458)
Q Consensus 434 ~~~~~~~i~~lf~~a~~~~p~i 455 (458)
-.......+++.|+++-+.|.|
T Consensus 98 Lt~Le~~DVLFIDEIHrl~~~v 119 (332)
T COG2255 98 LTNLEEGDVLFIDEIHRLSPAV 119 (332)
T ss_pred HhcCCcCCeEEEehhhhcChhH
Confidence 3334455667778888777764
No 51
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.92 E-value=9.7e-10 Score=112.08 Aligned_cols=63 Identities=29% Similarity=0.447 Sum_probs=48.0
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeecc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVH 420 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~ 420 (458)
.+..|++||||.++.-.-.-|.+.... ....+++||||||||||+||+.||+..+.+|..++.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~-----~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA-----GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc-----CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 355899999999886533333333222 223499999999999999999999999999998873
No 52
>CHL00181 cbbX CbbX; Provisional
Probab=98.92 E-value=2.2e-09 Score=107.46 Aligned_cols=91 Identities=22% Similarity=0.265 Sum_probs=62.3
Q ss_pred cccCChHHHHHHHHHHHHHHhhh----hhc---CCCcceeeecCCCCChHHHHHHHHHHhC---c----ceeeeccccch
Q 012671 359 DIILHPSLQRRIQHLAKATANTK----IHQ---APFRNMLFYGPPGTGKTMVAREIARKSE---E----MLHLLVHRLLP 424 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~~~~~----~~~---~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~----~~~~~~~~~~s 424 (458)
+++|.+.+++.|..+..+....+ .+. .+.-|+||+||||||||++|++||..+. . +++.++ .+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~---~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT---RD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec---HH
Confidence 58999999999988877644322 111 2334799999999999999999998762 1 355555 67
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 425 RSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 425 e~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+++.+|+|.+.... ..+++ ...+.||||
T Consensus 101 ~l~~~~~g~~~~~~---~~~l~---~a~ggVLfI 128 (287)
T CHL00181 101 DLVGQYIGHTAPKT---KEVLK---KAMGGVLFI 128 (287)
T ss_pred HHHHHHhccchHHH---HHHHH---HccCCEEEE
Confidence 78888998664322 22333 345677775
No 53
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.90 E-value=6e-08 Score=109.47 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=44.2
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+.|++++++++..++....... .....++|||||||||||++|++||..++.+|+.+.
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~--~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~ 379 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRG--KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFS 379 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhc--CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEe
Confidence 7788888887766544432211 122347999999999999999999999999999876
No 54
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.84 E-value=6.8e-09 Score=103.78 Aligned_cols=91 Identities=24% Similarity=0.313 Sum_probs=63.4
Q ss_pred cccCChHHHHHHHHHHHHHHhhhh----h---cCCCcceeeecCCCCChHHHHHHHHHHhCc-------ceeeeccccch
Q 012671 359 DIILHPSLQRRIQHLAKATANTKI----H---QAPFRNMLFYGPPGTGKTMVAREIARKSEE-------MLHLLVHRLLP 424 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~~~~~~----~---~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~-------~~~~~~~~~~s 424 (458)
+++|..++++.|..+..+....+. + ..|..++||+||||||||++|+++|..+.. +++.++ .+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~---~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT---RD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec---HH
Confidence 488999999999888876543221 1 124458999999999999999999987632 455566 67
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 425 RSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 425 e~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+++..|+|.+... +..+|+ .+.+++|||
T Consensus 100 ~l~~~~~g~~~~~---~~~~~~---~a~~gvL~i 127 (284)
T TIGR02880 100 DLVGQYIGHTAPK---TKEILK---RAMGGVLFI 127 (284)
T ss_pred HHhHhhcccchHH---HHHHHH---HccCcEEEE
Confidence 7888888866432 223333 346678775
No 55
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.7e-09 Score=111.60 Aligned_cols=61 Identities=26% Similarity=0.471 Sum_probs=49.2
Q ss_pred hhcCCCcceeeecCCCCChHHHHHHHHHHhCcc-eeeeccccchhhhhhhhhhhhhhhhhhHHHHHHh
Q 012671 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM-LHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLM 448 (458)
Q Consensus 382 ~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~-~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a 448 (458)
.++..-+++|||||||||||++|+.|+..++.. --+++ +++++++|+|+++.+.+. ||..+
T Consensus 251 lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVN---GPeIL~KYVGeSE~NvR~---LFaDA 312 (744)
T KOG0741|consen 251 LGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVN---GPEILNKYVGESEENVRK---LFADA 312 (744)
T ss_pred cCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccC---cHHHHHHhhcccHHHHHH---HHHhH
Confidence 344556899999999999999999999999754 44456 999999999999776654 55544
No 56
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.75 E-value=1.2e-08 Score=115.78 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=62.4
Q ss_pred ccCChHHHHHHHHHHHH-HHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh-----h----
Q 012671 360 IILHPSLQRRIQHLAKA-TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR-----Y---- 429 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~-~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~-----~---- 429 (458)
|+||+++.+.|...+.. .........|..++||+||||||||++|++||..++.+...+.+++++++++ +
T Consensus 511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~ 590 (821)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGS 590 (821)
T ss_pred CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCC
Confidence 89999988866554443 2222233455567999999999999999999999854333344444666643 2
Q ss_pred ---hhh--------hhhhhhhhhHHHHHHhhhcCCcee
Q 012671 430 ---LIG--------RRNQRKACCFLLTRLMHFYASATV 456 (458)
Q Consensus 430 ---~~g--------e~~~~~~~i~~lf~~a~~~~p~ii 456 (458)
|+| +..+..++++++|+++++++|.+.
T Consensus 591 ~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~ 628 (821)
T CHL00095 591 PPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIF 628 (821)
T ss_pred CCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHH
Confidence 222 122234456677777777777653
No 57
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.6e-08 Score=104.79 Aligned_cols=67 Identities=25% Similarity=0.331 Sum_probs=54.0
Q ss_pred CCCCCccccCChHHHH-HHHHHHHHH----HhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 353 AIKNNGDIILHPSLQR-RIQHLAKAT----ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~-~l~~l~~~~----~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
....|+.++..+++++ .+.++..+. ++.+.+....||.|||||||||||++.-|||++++.+++.+.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLe 267 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLE 267 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEee
Confidence 3378999999999888 455665553 444555555679999999999999999999999999999875
No 58
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.72 E-value=2.2e-08 Score=100.34 Aligned_cols=61 Identities=28% Similarity=0.469 Sum_probs=48.6
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.|++++|+.++...|..++.... ....++.++|||||||||||++|+++|+.++.++..+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~---~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAK---MRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHH---hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 68899999998888776654332 22345678999999999999999999999998876554
No 59
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.67 E-value=1.6e-08 Score=102.99 Aligned_cols=63 Identities=25% Similarity=0.422 Sum_probs=50.8
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+..|++++|+++....+..+.... ...+.++.++|||||||||||++|+++|+.++.++..+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~---~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~ 83 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAA---KKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITS 83 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHH---HhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEe
Confidence 347999999999888776655432 223456789999999999999999999999999877655
No 60
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.66 E-value=4.1e-08 Score=102.08 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=62.9
Q ss_pred ccCChHHHHHHHHHHHHHHhhh---hh---cCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh-hhhh
Q 012671 360 IILHPSLQRRIQHLAKATANTK---IH---QAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR-YLIG 432 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~---~~---~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~-~~~g 432 (458)
|+|++..++.+...+...+... .+ ..++.|+||+||||||||++|++||..++.+|+.+. ++++.+ +|+|
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD---~t~f~e~GyvG 93 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE---ATKFTEVGYVG 93 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeec---chhhccCCccc
Confidence 8999999887755443321110 00 122589999999999999999999999999999988 787886 7888
Q ss_pred hhhhhhhhhHHHHHHhhhcCC
Q 012671 433 RRNQRKACCFLLTRLMHFYAS 453 (458)
Q Consensus 433 e~~~~~~~i~~lf~~a~~~~p 453 (458)
... ...+..+|..+....|
T Consensus 94 ~d~--e~~ir~L~~~A~~~~~ 112 (443)
T PRK05201 94 RDV--ESIIRDLVEIAVKMVR 112 (443)
T ss_pred CCH--HHHHHHHHHHHHHHhH
Confidence 432 2345566666644444
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=98.66 E-value=4.2e-08 Score=105.02 Aligned_cols=65 Identities=23% Similarity=0.340 Sum_probs=52.7
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeecccc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRL 422 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~ 422 (458)
+..|++++|++.....+..++.... ++.|++++|||||||||||++|++||+++|.+++.++..+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~----~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL----KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh----cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 3468899999998887776654332 3455789999999999999999999999999988887443
No 62
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.66 E-value=4.5e-08 Score=109.82 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=65.8
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh----------Ccceeeeccccc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------EEMLHLLVHRLL 423 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~----------g~~~~~~~~~~~ 423 (458)
...+++|+|.++...++-.+... ....|+|||||||||||+++++||..+ +..++.++ +
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~--------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~---~ 246 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCR--------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD---M 246 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec---H
Confidence 45678899998766654433211 123499999999999999999999987 55566655 6
Q ss_pred hhhh--hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 424 PRSM--RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 424 se~~--~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+.++ .+|.|+...+.. .+++++....|+||||
T Consensus 247 ~~l~a~~~~~g~~e~~l~---~i~~~~~~~~~~ILfi 280 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLK---AVVSEIEKEPNAILFI 280 (731)
T ss_pred HHHhhhccccchHHHHHH---HHHHHHhccCCeEEEE
Confidence 6776 478887765444 5566666668999997
No 63
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.65 E-value=4.3e-08 Score=101.93 Aligned_cols=70 Identities=20% Similarity=0.314 Sum_probs=53.1
Q ss_pred ccCChHHHHHHHHHHHHHHhhh------hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh-hhhh
Q 012671 360 IILHPSLQRRIQHLAKATANTK------IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR-YLIG 432 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~------~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~-~~~g 432 (458)
|+|+++.++.+...+...+... ....+++|+||+||||||||++|++||..++.+|+.+. .+.+++ +|+|
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd---at~~~e~g~vG 90 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE---ATKFTEVGYVG 90 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee---cceeecCCccc
Confidence 8999999887754443321111 11234689999999999999999999999999999988 666664 6777
No 64
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.65 E-value=1.4e-08 Score=113.56 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=64.5
Q ss_pred cccCChHHHHHHHHHHHHH-HhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh-----hhhh
Q 012671 359 DIILHPSLQRRIQHLAKAT-ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR-----YLIG 432 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~-~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~-----~~~g 432 (458)
.|+||++..+.|...+... ........|..++||+||||||||.+|+.||..++.+++.+. ++++.+ +++|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id---~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFD---MSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEee---chhhcccccHHHHcC
Confidence 3789988888666555432 222233456678999999999999999999999998887766 555533 3333
Q ss_pred ---------------hhhhhhhhhHHHHHHhhhcCCce
Q 012671 433 ---------------RRNQRKACCFLLTRLMHFYASAT 455 (458)
Q Consensus 433 ---------------e~~~~~~~i~~lf~~a~~~~p~i 455 (458)
+..+..++++++||++++++|.|
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v 573 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDV 573 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHH
Confidence 11222356677778887777765
No 65
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.64 E-value=9e-08 Score=100.33 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=50.7
Q ss_pred ccCChHHHHHHHHHHHHH-Hhhhh-------hcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh-hh
Q 012671 360 IILHPSLQRRIQHLAKAT-ANTKI-------HQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR-YL 430 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~-~~~~~-------~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~-~~ 430 (458)
|+|++.+++.+...+... ..... ...+..|+||+||||||||++|++||..++.+|+.+. ++.+.. +|
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id---~~~l~~~gy 149 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIAD---ATTLTEAGY 149 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecc---hhhcccCCc
Confidence 899999988775433211 11100 0124579999999999999999999999999999887 555443 57
Q ss_pred hhh
Q 012671 431 IGR 433 (458)
Q Consensus 431 ~ge 433 (458)
+|.
T Consensus 150 vG~ 152 (412)
T PRK05342 150 VGE 152 (412)
T ss_pred ccc
Confidence 774
No 66
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.59 E-value=2.6e-08 Score=111.78 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=62.3
Q ss_pred cccCChHHHHHHHHHHHHHH-hhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh-----h---
Q 012671 359 DIILHPSLQRRIQHLAKATA-NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR-----Y--- 429 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~~-~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~-----~--- 429 (458)
.|+||++..+.+........ .......|..++||+||||||||++|++||..++.+++.+. ++++++ +
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d---~se~~~~~~~~~lig 531 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFD---MSEYMEKHTVSRLIG 531 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEe---CchhhhcccHHHHhc
Confidence 47888887776554444322 12222345557999999999999999999999998877766 666544 2
Q ss_pred ----hhh--------hhhhhhhhhHHHHHHhhhcCCce
Q 012671 430 ----LIG--------RRNQRKACCFLLTRLMHFYASAT 455 (458)
Q Consensus 430 ----~~g--------e~~~~~~~i~~lf~~a~~~~p~i 455 (458)
|+| +..+..++++++|+++++++|.+
T Consensus 532 ~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~ 569 (731)
T TIGR02639 532 APPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDI 569 (731)
T ss_pred CCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHH
Confidence 222 11223456677777777777764
No 67
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.55 E-value=7.7e-08 Score=95.30 Aligned_cols=53 Identities=28% Similarity=0.381 Sum_probs=41.4
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+..|+++++++.++..|...... ... .|+|||||||||||+.|.++|++++.
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~------~~l--p~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR------RIL--PHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh------cCC--ceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 345799999999887766533222 123 39999999999999999999999976
No 68
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=6e-06 Score=89.91 Aligned_cols=94 Identities=21% Similarity=0.269 Sum_probs=59.5
Q ss_pred ccchhHHHHHhCCCcchhhcccCCCCcccchhhhhHHHhhhcccCCCCCCCCCCCCCccccCChHHHHH-HHHHHHHHHh
Q 012671 301 RVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRR-IQHLAKATAN 379 (458)
Q Consensus 301 ~v~~~~~e~~Lg~p~lvRe~sr~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~dvi~~~~l~~~-l~~l~~~~~~ 379 (458)
.|+.+|++.++.-|+-.+...... +.+...-+ ..+.+++++| +++ ++.|+.....
T Consensus 290 ~ViRnYlDwll~lPW~~~sk~~~D------l~~a~~iL------------d~dHYGLekV------KeRIlEyLAV~~l~ 345 (782)
T COG0466 290 TVIRNYLDWLLDLPWGKRSKDKLD------LKKAEKIL------------DKDHYGLEKV------KERILEYLAVQKLT 345 (782)
T ss_pred HHHHHHHHHHHhCCCccccchhhh------HHHHHHHh------------cccccCchhH------HHHHHHHHHHHHHh
Confidence 478999999998665544332221 22222222 2345555544 554 4444444333
Q ss_pred hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccc
Q 012671 380 TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHR 421 (458)
Q Consensus 380 ~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~ 421 (458)
.+ -.+ .-++|+||||+|||+|++.||..+|-.|+.|+..
T Consensus 346 ~~-~kG--pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLG 384 (782)
T COG0466 346 KK-LKG--PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLG 384 (782)
T ss_pred cc-CCC--cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecC
Confidence 22 222 2677899999999999999999999999998743
No 69
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.50 E-value=2e-07 Score=97.56 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=48.4
Q ss_pred ccCChHHHHHHHHHHH-HHHhhhh---hc------CCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh-h
Q 012671 360 IILHPSLQRRIQHLAK-ATANTKI---HQ------APFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM-R 428 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~-~~~~~~~---~~------~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~-~ 428 (458)
|+|+++.++.+...+. +...... .. .+..+|||+||||||||++|++||..++.+|..+. .+.+. .
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d---a~~L~~~ 155 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD---ATTLTEA 155 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec---hhhcccc
Confidence 7999998886654331 1111111 01 12468999999999999999999999999998776 33333 2
Q ss_pred hhhhh
Q 012671 429 YLIGR 433 (458)
Q Consensus 429 ~~~ge 433 (458)
+|+|.
T Consensus 156 gyvG~ 160 (413)
T TIGR00382 156 GYVGE 160 (413)
T ss_pred ccccc
Confidence 56664
No 70
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.49 E-value=2.9e-07 Score=104.56 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=65.3
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC----------cceeeeccccc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE----------EMLHLLVHRLL 423 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g----------~~~~~~~~~~~ 423 (458)
...|+.|+|.+...+++.++... ....|+||+||||||||+++..||..+. ..++.+. +
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r--------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~---~ 243 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR--------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD---I 243 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc--------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee---H
Confidence 34577899988776665544321 2345999999999999999999999863 5566555 6
Q ss_pred hhhh--hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 424 PRSM--RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 424 se~~--~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+.++ .+|.|+...+. ..+++.+....|+||||
T Consensus 244 ~~l~ag~~~~ge~e~rl---~~i~~~~~~~~~~ILfi 277 (821)
T CHL00095 244 GLLLAGTKYRGEFEERL---KRIFDEIQENNNIILVI 277 (821)
T ss_pred HHHhccCCCccHHHHHH---HHHHHHHHhcCCeEEEE
Confidence 6665 47778776544 44566666678999997
No 71
>PRK06526 transposase; Provisional
Probab=98.47 E-value=1.1e-07 Score=93.67 Aligned_cols=54 Identities=30% Similarity=0.420 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhhhh
Q 012671 369 RIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMRYL 430 (458)
Q Consensus 369 ~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~~~ 430 (458)
.+..+....+... ..|++|+|||||||||||.+|+..+ |..++.++ .++++..+
T Consensus 85 ~~~~l~~~~fi~~-----~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t---~~~l~~~l 141 (254)
T PRK06526 85 TIAHLGTLDFVTG-----KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT---AAQWVARL 141 (254)
T ss_pred HHHHHhcCchhhc-----CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh---HHHHHHHH
Confidence 4555555444422 3599999999999999999999886 44444333 55555544
No 72
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.1e-06 Score=89.62 Aligned_cols=35 Identities=34% Similarity=0.532 Sum_probs=30.9
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeeeccc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHR 421 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~ 421 (458)
..-++|+||||+|||++++.||..+|-.|+.++-.
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvG 472 (906)
T KOG2004|consen 438 GKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVG 472 (906)
T ss_pred CcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecc
Confidence 34677999999999999999999999999997643
No 73
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.42 E-value=5e-07 Score=102.93 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=61.6
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh----------Ccceeeeccccc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------EEMLHLLVHRLL 423 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~----------g~~~~~~~~~~~ 423 (458)
...++.|+|.+...+++-++... ....|+||+||||||||+++++||..+ |..++.+. +
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r--------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~---l 242 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD---M 242 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhc--------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe---h
Confidence 45688899998765544333221 112499999999999999999999988 55555554 5
Q ss_pred hhhh--hhhhhhhhhhhhhhHHHHHHh-hhcCCceeeC
Q 012671 424 PRSM--RYLIGRRNQRKACCFLLTRLM-HFYASATVYI 458 (458)
Q Consensus 424 se~~--~~~~ge~~~~~~~i~~lf~~a-~~~~p~iifi 458 (458)
+.++ .+|.|+...+... +++.+ +...|+||||
T Consensus 243 ~~l~ag~~~~g~~e~~lk~---~~~~~~~~~~~~ILfI 277 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKG---VLNDLAKQEGNVILFI 277 (857)
T ss_pred hhhhhccchhhhhHHHHHH---HHHHHHHcCCCeEEEE
Confidence 6555 4577777655543 33433 3457899987
No 74
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.42 E-value=3.9e-07 Score=95.75 Aligned_cols=61 Identities=28% Similarity=0.445 Sum_probs=45.5
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeecc
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVH 420 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~ 420 (458)
..|++++|+.++......+...... ....++|||||||||||++|+.|+..++.+|+.++.
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-----~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-----GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-----CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 5788999999875542222222211 223489999999999999999999999999988774
No 75
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.8e-07 Score=91.82 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=49.8
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhc--------CCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhh
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQ--------APFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLI 431 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~--------~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ 431 (458)
|||++..++.+.-... ..+.+.+. -...|+||.||+|||||+||+.||..++.||.+-....+++ -+|+
T Consensus 63 VIGQe~AKKvLsVAVY-NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTE--AGYV 139 (408)
T COG1219 63 VIGQEQAKKVLSVAVY-NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTE--AGYV 139 (408)
T ss_pred eecchhhhceeeeeeh-hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhh--cccc
Confidence 8888888876532221 11111111 12459999999999999999999999999998876333332 3788
Q ss_pred hhhh
Q 012671 432 GRRN 435 (458)
Q Consensus 432 ge~~ 435 (458)
|+-.
T Consensus 140 GEDV 143 (408)
T COG1219 140 GEDV 143 (408)
T ss_pred chhH
Confidence 8654
No 76
>PRK08181 transposase; Validated
Probab=98.39 E-value=2.8e-07 Score=91.41 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=31.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhhhh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMRYL 430 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~~~ 430 (458)
..|++|+|||||||||||.+||.++ |..++.++ .++++..+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~---~~~L~~~l 149 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR---TTDLVQKL 149 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee---HHHHHHHH
Confidence 3599999999999999999999765 55555555 55555543
No 77
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.36 E-value=6e-06 Score=93.21 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=42.2
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
..|...+++++..+....... +..+...++|+||||||||++++.||..++.+|+.++
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~--~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~ 381 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRV--NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA 381 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhc--ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 566777778665443332221 1123347999999999999999999999999998876
No 78
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.35 E-value=7.3e-07 Score=76.23 Aligned_cols=33 Identities=36% Similarity=0.553 Sum_probs=28.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcc---eeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEM---LHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~---~~~~~ 419 (458)
..+++|+||||||||++++.|+..++.. ++.++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 3589999999999999999999999876 44444
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=4.7e-07 Score=96.58 Aligned_cols=54 Identities=28% Similarity=0.371 Sum_probs=42.3
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+..|++|+|++++...+...+.. +..+.++|||||||||||++|+++|..++.
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~-------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKK-------NSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345799999999987776654332 233446899999999999999999999865
No 80
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.33 E-value=1.9e-06 Score=84.90 Aligned_cols=66 Identities=23% Similarity=0.395 Sum_probs=46.4
Q ss_pred ccCChHHHH-HHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhhhhhh
Q 012671 360 IILHPSLQR-RIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMRYLIG 432 (458)
Q Consensus 360 vi~~~~l~~-~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~~~~g 432 (458)
+-+.+...+ .+..+.....+.. ...|++|||||||||||||.+||+.+ |.++..++ .++++..+-.
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~---~~el~~~Lk~ 150 (254)
T COG1484 81 FEFQPGIDKKALEDLASLVEFFE----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT---APDLLSKLKA 150 (254)
T ss_pred ccCCcchhHHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE---HHHHHHHHHH
Confidence 444454444 6666665543322 34699999999999999999999998 45555555 8888887666
No 81
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.32 E-value=1.6e-06 Score=98.88 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=61.1
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh----------Ccceeeecccc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------EEMLHLLVHRL 422 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~----------g~~~~~~~~~~ 422 (458)
....++.|+|.+....++-.+... ....|+||+||||||||+++.+||..+ |.+++.+.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r--------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~--- 236 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD--- 236 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc--------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee---
Confidence 345678899998765544433211 223499999999999999999999986 44455544
Q ss_pred chhhh--hhhhhhhhhhhhhhHHHHHHhhh-cCCceeeC
Q 012671 423 LPRSM--RYLIGRRNQRKACCFLLTRLMHF-YASATVYI 458 (458)
Q Consensus 423 ~se~~--~~~~ge~~~~~~~i~~lf~~a~~-~~p~iifi 458 (458)
++.++ .+|.|+...+. ..+++.+.. ..|+||||
T Consensus 237 ~~~l~a~~~~~g~~e~~l---~~~l~~~~~~~~~~ILfI 272 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERL---KAVLNEVTKSEGQIILFI 272 (852)
T ss_pred HHHHhhcchhhhhHHHHH---HHHHHHHHhcCCCeEEEe
Confidence 56554 46777665443 344555543 36899987
No 82
>PRK09183 transposase/IS protein; Provisional
Probab=98.31 E-value=5.3e-07 Score=89.04 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=30.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhhhh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMRYL 430 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~~~ 430 (458)
..|++|+||||||||||+.+||..+ |..+..++ +++++..+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~---~~~l~~~l 145 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT---AADLLLQL 145 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe---HHHHHHHH
Confidence 3599999999999999999998764 54554444 45554433
No 83
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.30 E-value=1.9e-07 Score=86.57 Aligned_cols=65 Identities=23% Similarity=0.250 Sum_probs=44.0
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCc----ceeeeccccchhhhh---------hhhhhhh---hhhhhhHHHHHHhh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEE----MLHLLVHRLLPRSMR---------YLIGRRN---QRKACCFLLTRLMH 449 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~----~~~~~~~~~~se~~~---------~~~ge~~---~~~~~i~~lf~~a~ 449 (458)
|..++||+||+|||||.+|++||..++. +++.+. ++++.. +++|... .....-++++|+++
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d---~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID---MSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE---GGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh---hhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 5679999999999999999999999995 555544 555544 3333221 11123366778888
Q ss_pred hcCC
Q 012671 450 FYAS 453 (458)
Q Consensus 450 ~~~p 453 (458)
+++|
T Consensus 79 Ka~~ 82 (171)
T PF07724_consen 79 KAHP 82 (171)
T ss_dssp GCSH
T ss_pred hccc
Confidence 8877
No 84
>PLN03025 replication factor C subunit; Provisional
Probab=98.29 E-value=6.8e-07 Score=90.71 Aligned_cols=51 Identities=29% Similarity=0.456 Sum_probs=40.6
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..|+++++++++...|..++.. ....|+|||||||||||++|.++|+++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~--------~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD--------GNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc--------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999988877655332 112489999999999999999999997
No 85
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.29 E-value=6.9e-07 Score=84.86 Aligned_cols=46 Identities=35% Similarity=0.551 Sum_probs=34.7
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+|.||+||+.+++.+.-.+.. ..|+||+|||||||||+|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG----------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG----------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC----------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC----------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 588999999999877533221 2499999999999999999999765
No 86
>PRK08116 hypothetical protein; Validated
Probab=98.29 E-value=3.4e-06 Score=83.77 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=31.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhhhh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMRYL 430 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~~~ 430 (458)
.+++|||||||||||||.+|++++ |.+++.++ .++++..+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~---~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN---FPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE---HHHHHHHH
Confidence 479999999999999999999986 56666666 55555443
No 87
>PRK06620 hypothetical protein; Validated
Probab=98.27 E-value=1.2e-06 Score=83.99 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=42.1
Q ss_pred CCCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCC-cceeeecCCCCChHHHHHHHHHHhCcce
Q 012671 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPF-RNMLFYGPPGTGKTMVAREIARKSEEML 415 (458)
Q Consensus 351 ~~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~-rnvLl~GPPGTGKT~lAkaLA~~~g~~~ 415 (458)
..+..+|+++|..+.....+..+..+...+ ...|+ +.++||||||||||||+++++...+..|
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~--~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~ 72 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF--GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI 72 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc--ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE
Confidence 345667888876664444444444433221 12342 6899999999999999999999887543
No 88
>PRK06893 DNA replication initiation factor; Validated
Probab=98.26 E-value=6.7e-07 Score=86.55 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=36.1
Q ss_pred CCCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 351 ~~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..+...|+++++.+...- +..+.. +... .....++||||||||||||+.++|+++
T Consensus 9 ~~~~~~fd~f~~~~~~~~-~~~~~~---~~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 9 QIDDETLDNFYADNNLLL-LDSLRK---NFID--LQQPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCCcccccccccCChHHH-HHHHHH---Hhhc--cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346678999997765432 222211 1111 112367999999999999999999886
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.26 E-value=1.2e-06 Score=88.31 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=47.1
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHR 421 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~ 421 (458)
+..|++++++++....+..++.. +..+..+|||||||||||+++++++..++.+++.++..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 45899999999988877665531 22233455599999999999999999999888877743
No 90
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.24 E-value=4.7e-07 Score=91.53 Aligned_cols=57 Identities=32% Similarity=0.447 Sum_probs=40.6
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
....++|++|+.++...- -+++.. .+.+ ...+++||||||||||+||+.|+..+..+
T Consensus 133 RPktL~dyvGQ~hlv~q~-gllrs~--ieq~--~ipSmIlWGppG~GKTtlArlia~tsk~~ 189 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQD-GLLRSL--IEQN--RIPSMILWGPPGTGKTTLARLIASTSKKH 189 (554)
T ss_pred CcchHHHhcchhhhcCcc-hHHHHH--HHcC--CCCceEEecCCCCchHHHHHHHHhhcCCC
Confidence 455788899888876652 222221 1122 23499999999999999999999998766
No 91
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.24 E-value=2.3e-06 Score=87.39 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=51.1
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC--cceeeeccccchhhhhhhhh
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE--EMLHLLVHRLLPRSMRYLIG 432 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g--~~~~~~~~~~~se~~~~~~g 432 (458)
..+.+|||.+..+...-++......+. ..+++||.||||||||-||-++|+++| .||..|+ +|++.+.-+.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~---aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~is---gSEiyS~e~k 94 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKI---AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSIS---GSEIYSSEVK 94 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT-----TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEE---GGGG-BTTC-
T ss_pred ccccccChHHHHHHHHHHHHHHhcccc---cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcc---cceeeecccC
Confidence 345689999998887766666554443 357999999999999999999999998 8899999 7776655444
No 92
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.24 E-value=3.7e-06 Score=89.32 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=46.1
Q ss_pred CCCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh-----Ccceeeeccccchh
Q 012671 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----EEMLHLLVHRLLPR 425 (458)
Q Consensus 351 ~~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~-----g~~~~~~~~~~~se 425 (458)
..+...|++++..+.....+..+.....+ .+..+.+++||||||||||||++++|+++ +..++.++ ..+
T Consensus 115 l~~~~tfd~fv~g~~n~~a~~~~~~~~~~---~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~---~~~ 188 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRLAHAAALAVAEN---PGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT---SEK 188 (450)
T ss_pred CCCCCcccccccCCCcHHHHHHHHHHHhC---cCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE---HHH
Confidence 34566888866444433333322222222 12345679999999999999999999997 44455555 444
Q ss_pred hhhhhh
Q 012671 426 SMRYLI 431 (458)
Q Consensus 426 ~~~~~~ 431 (458)
++..+.
T Consensus 189 ~~~~~~ 194 (450)
T PRK00149 189 FTNDFV 194 (450)
T ss_pred HHHHHH
Confidence 444443
No 93
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=4.5e-06 Score=88.51 Aligned_cols=73 Identities=14% Similarity=0.223 Sum_probs=45.2
Q ss_pred CCCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh-----Ccceeeeccccchh
Q 012671 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----EEMLHLLVHRLLPR 425 (458)
Q Consensus 351 ~~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~-----g~~~~~~~~~~~se 425 (458)
..+..+|++++..+..............+ ...+.+++||||||||||||+.++|+++ +..++.++ ..+
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~----~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~---~~~ 170 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKN----PGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT---SEK 170 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhC----cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE---HHH
Confidence 45667898887555443333222222211 1225679999999999999999999986 33445555 444
Q ss_pred hhhhh
Q 012671 426 SMRYL 430 (458)
Q Consensus 426 ~~~~~ 430 (458)
++..+
T Consensus 171 f~~~~ 175 (440)
T PRK14088 171 FLNDL 175 (440)
T ss_pred HHHHH
Confidence 44443
No 94
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.23 E-value=1.2e-06 Score=81.70 Aligned_cols=42 Identities=33% Similarity=0.523 Sum_probs=30.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhhhhh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMRYLI 431 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~~~~ 431 (458)
..|++|+|||||||||||.+|+.++ |.++..++ .++++..+-
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~---~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT---ASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE---HHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee---cCceecccc
Confidence 4699999999999999999999876 56665555 666665443
No 95
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.23 E-value=2.7e-06 Score=95.49 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=59.5
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh----------Ccceeeeccccc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------EEMLHLLVHRLL 423 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~----------g~~~~~~~~~~~ 423 (458)
.+.++.++|.+....++..+... ....|+||+||||||||+++++||... +..++.+. +
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r--------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~---~ 250 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR--------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD---I 250 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc--------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc---H
Confidence 34566688877655544433222 113499999999999999999999874 33343333 4
Q ss_pred hhhh--hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 424 PRSM--RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 424 se~~--~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+.++ .+|.|+...+. ..+++.+..+.|+||||
T Consensus 251 ~~llaG~~~~Ge~e~rl---~~l~~~l~~~~~~ILfI 284 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRF---KALLKQLEQDTNSILFI 284 (758)
T ss_pred HHHhcccchhhhHHHHH---HHHHHHHHhcCCCEEEe
Confidence 5554 35677665443 34566677788999997
No 96
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.23 E-value=4.5e-06 Score=81.73 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=33.5
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhhhhhh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMRYLIG 432 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~~~~g 432 (458)
..+++|+||||||||||+.+||.++ |..++.++ .++++..+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it---~~~l~~~l~~ 144 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT---VADIMSAMKD 144 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE---HHHHHHHHHH
Confidence 3589999999999999999999998 55666665 6666654443
No 97
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.4e-06 Score=90.12 Aligned_cols=53 Identities=25% Similarity=0.226 Sum_probs=41.4
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+..|++|+||+.+.+.+...... +..+..+||+||||||||++|+++|..++.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------GRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------CCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 45899999999988876644332 222335799999999999999999999864
No 98
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.22 E-value=2.4e-06 Score=97.32 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=59.3
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC----------cceeeecccc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE----------EMLHLLVHRL 422 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g----------~~~~~~~~~~ 422 (458)
....+++|+|+++...++-.+. .. ....|+||+||||||||.+++.||..+. ..++.+.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l---~r-----~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~--- 250 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDIL---LR-----RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD--- 250 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHH---hc-----CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee---
Confidence 3457888999988655433221 11 1233999999999999999999999863 2233333
Q ss_pred chhhh--hhhhhhhhhhhhhhHHHHHHhh-hcCCceeeC
Q 012671 423 LPRSM--RYLIGRRNQRKACCFLLTRLMH-FYASATVYI 458 (458)
Q Consensus 423 ~se~~--~~~~ge~~~~~~~i~~lf~~a~-~~~p~iifi 458 (458)
++.++ .+|.|+...+.. .+++++. ...++||||
T Consensus 251 l~~l~ag~~~~ge~e~~lk---~ii~e~~~~~~~~ILfI 286 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLK---SVIDEVKASPQPIILFI 286 (852)
T ss_pred hhhhhcccccchHHHHHHH---HHHHHHHhcCCCeEEEE
Confidence 55554 257777755444 4445453 346889987
No 99
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.21 E-value=2.5e-06 Score=86.22 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=32.7
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhhhh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMRYL 430 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~~~ 430 (458)
..+|++||||||||||||+.+||+++ |.++..+. +++++..+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~---~~~l~~~l 199 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH---FPEFIREL 199 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE---HHHHHHHH
Confidence 45799999999999999999999998 55555554 55555443
No 100
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.21 E-value=2.9e-06 Score=73.41 Aligned_cols=34 Identities=50% Similarity=0.812 Sum_probs=29.6
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
+.++++++||||||||++++.++..+ +.+++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 34689999999999999999999998 77777666
No 101
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.21 E-value=5.5e-06 Score=79.63 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=38.9
Q ss_pred CCCCCCccccCCh--HHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 352 EAIKNNGDIILHP--SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 352 ~~~~~~~dvi~~~--~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
....+|++++... .+...+..+. . ...+.++++|||||||||||||+++++++ |..++.++
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~---~----~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELA---A----GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHH---h----ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3456788877332 2223333222 1 12345689999999999999999999986 34444444
No 102
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.19 E-value=6.7e-06 Score=86.16 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=44.8
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh-----Ccceeeeccccchhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----EEMLHLLVHRLLPRS 426 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~-----g~~~~~~~~~~~se~ 426 (458)
.+...|++++..+........+.....+ ....+..++||||||||||||++++++++ +..++.++ ..++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~---~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~---~~~~ 177 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAEN---PGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS---SEKF 177 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhC---cCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE---HHHH
Confidence 4566788855333332222222222211 22345678999999999999999999987 45666666 4444
Q ss_pred hhhhh
Q 012671 427 MRYLI 431 (458)
Q Consensus 427 ~~~~~ 431 (458)
+..+.
T Consensus 178 ~~~~~ 182 (405)
T TIGR00362 178 TNDFV 182 (405)
T ss_pred HHHHH
Confidence 44443
No 103
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.18 E-value=1.3e-06 Score=83.69 Aligned_cols=55 Identities=31% Similarity=0.438 Sum_probs=43.7
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh-Ccceee
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-EEMLHL 417 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~-g~~~~~ 417 (458)
.-+.|+||+++...++..++... +.| |++|.||||||||+-+.+||+.+ |..|-.
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~g------nmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke 79 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEG------NMP--NLIISGPPGTGKTTSILCLARELLGDSYKE 79 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcC------CCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhh
Confidence 35778999999999988765542 333 99999999999999999999986 644433
No 104
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.17 E-value=1.5e-06 Score=96.93 Aligned_cols=61 Identities=25% Similarity=0.396 Sum_probs=45.3
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+..|++++|+..+......+...... ....++|||||||||||++|++|++.++.+|+.++
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-----~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-----DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 45789999998876432223222222 22349999999999999999999999988887766
No 105
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.17 E-value=1.2e-06 Score=85.18 Aligned_cols=54 Identities=7% Similarity=0.084 Sum_probs=35.8
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+...|++++.. .....+..+..+..+. ...+++||||||||||||+.++|+.+.
T Consensus 17 ~~~~fd~f~~~-~n~~a~~~l~~~~~~~-----~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 17 DDETFASFYPG-DNDSLLAALQNALRQE-----HSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CcCCccccccC-ccHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45577777733 2223444443333221 234899999999999999999998764
No 106
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.1e-06 Score=91.85 Aligned_cols=48 Identities=31% Similarity=0.442 Sum_probs=38.9
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..+|.||+|++..++.+.-.+.. ..|+||+|||||||||+|+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG----------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG----------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc----------CCcEEEecCCCCchHHhhhhhcccC
Confidence 45899999999999887533221 3599999999999999999998654
No 107
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.16 E-value=1.2e-06 Score=83.64 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=38.3
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
....|++++.. .....+..+..+.. .....+++||||||||||++|++++..+. .+++.++
T Consensus 10 ~~~~~~~~~~~-~~~~~~~~l~~~~~-----~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~ 73 (226)
T TIGR03420 10 DDPTFDNFYAG-GNAELLAALRQLAA-----GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred CchhhcCcCcC-CcHHHHHHHHHHHh-----cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 34567777631 22223333333322 23346999999999999999999998874 4455444
No 108
>PRK12377 putative replication protein; Provisional
Probab=98.15 E-value=3.4e-06 Score=82.78 Aligned_cols=39 Identities=31% Similarity=0.561 Sum_probs=30.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~ 428 (458)
..+++|+|||||||||||.+||+.+ |..+..++ .++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~---~~~l~~ 142 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT---VPDVMS 142 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE---HHHHHH
Confidence 3599999999999999999999998 45555454 444444
No 109
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2e-06 Score=91.23 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=42.3
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+..|++|+|++.+...|...+.. +..+..+|||||||||||++|+.+|..++.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~-------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKS-------GKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 345899999999988876655432 222235899999999999999999999876
No 110
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=2.6e-06 Score=91.84 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=42.4
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+..|+||||++.+.+.|...+.. +..+..+|||||||||||++|+.+|+.+++
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~-------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQ-------QYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh-------CCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345799999999998877655432 222235899999999999999999999865
No 111
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=2.9e-06 Score=88.82 Aligned_cols=53 Identities=28% Similarity=0.315 Sum_probs=41.5
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+..|++|+||+.+.+.|...+.. +..+..+|||||||||||++|+++|+.++.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------GRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------CCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45799999999988876554332 222335999999999999999999999865
No 112
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.12 E-value=2.9e-06 Score=85.85 Aligned_cols=51 Identities=27% Similarity=0.431 Sum_probs=40.1
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+..|+++++++++...+..++.. + ...++|||||||||||++|+++++.+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~------~--~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS------P--NLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC------C--CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34688999999887777665432 1 123799999999999999999999884
No 113
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.3e-06 Score=86.30 Aligned_cols=54 Identities=26% Similarity=0.418 Sum_probs=42.0
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+..|++++|++.+.+.+...... +..+.++|||||||+|||++|++++..++.
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~-------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIEN-------NHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345799999999887765544322 334468999999999999999999998754
No 114
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.11 E-value=3.9e-06 Score=84.86 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=52.0
Q ss_pred ccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC--cceeeeccccchhhhhhhhh
Q 012671 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE--EMLHLLVHRLLPRSMRYLIG 432 (458)
Q Consensus 358 ~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g--~~~~~~~~~~~se~~~~~~g 432 (458)
+.+|||.+..+...-+....... ....+++||.||||||||-||-+||+++| .||..|+ +|++.+--+.
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~g---k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~is---gsEiYS~E~k 109 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQG---KMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAIS---GSEIYSLEVK 109 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhC---cccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeec---cceeeeeccc
Confidence 45789988888666555554433 33468999999999999999999999998 6788888 6666554333
No 115
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=3.4e-06 Score=92.14 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=53.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
..+||+||||||||++.+++|.++|++++.+. +.++...--+-. .......|..++.+.|+|||+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evd---c~el~~~s~~~~---etkl~~~f~~a~~~~pavifl 496 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVD---CYELVAESASHT---ETKLQAIFSRARRCSPAVLFL 496 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEecc---HHHHhhcccchh---HHHHHHHHHHHhhcCceEEEE
Confidence 37999999999999999999999999999988 777766554433 224456788899999999996
No 116
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=3.1e-06 Score=90.42 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=40.7
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+..|+|+|||+.+.+.+...... +..+.++||+||||||||++|+.+|..++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------NKIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 35899999999888866543322 33345899999999999999999998653
No 117
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=3.2e-06 Score=92.43 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=42.4
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
...|++|||++.+.+.|...+.. +.....+|||||||||||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------GRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45799999999988777654432 233457899999999999999999999875
No 118
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=3.8e-06 Score=90.29 Aligned_cols=54 Identities=22% Similarity=0.162 Sum_probs=42.8
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+..|+|++|++.+.+.+...... +..+.++||+||||||||++|+.+|+.++.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~-------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN-------DRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455899999999988877653322 233458999999999999999999999865
No 119
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.07 E-value=1e-05 Score=88.15 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=44.9
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh-----Ccceeeeccccchhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----EEMLHLLVHRLLPRS 426 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~-----g~~~~~~~~~~~se~ 426 (458)
.....|++++..+........+.....+. ...+..++||||+|||||||+++||+++ |..++.++ +.++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~---~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit---aeef 355 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAP---AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS---SEEF 355 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCc---cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee---HHHH
Confidence 45667888875554332221111111111 1223459999999999999999999987 34555555 5555
Q ss_pred hhhhhh
Q 012671 427 MRYLIG 432 (458)
Q Consensus 427 ~~~~~g 432 (458)
+..++.
T Consensus 356 ~~el~~ 361 (617)
T PRK14086 356 TNEFIN 361 (617)
T ss_pred HHHHHH
Confidence 554443
No 120
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=3.5e-06 Score=90.65 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=41.7
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+..|+||+||+.+...|..++.. +..+..+|||||||||||++|+++|..+..
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------GRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45799999999998877766543 122234699999999999999999998853
No 121
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=4.2e-06 Score=87.45 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=44.8
Q ss_pred CCCccccCChHHHHHHHHHHHHHHh-hh-hhcCCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATAN-TK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~-~~-~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
..|++|+|++.+.+.|...+..... .. .....+..+|||||||||||++|+.+|..+..+
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4689999999999988777665331 11 111234579999999999999999999987543
No 122
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=4e-06 Score=94.20 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=41.8
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
...|++|||++.+...|..++.. +..+..+|||||||||||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~-------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ-------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------CCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 35899999999988876654332 1222346999999999999999999998764
No 123
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.05 E-value=3.4e-06 Score=74.58 Aligned_cols=31 Identities=42% Similarity=0.606 Sum_probs=29.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+|||+||||||||.+++.||..++.++..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~ 31 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRIN 31 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEE
Confidence 6899999999999999999999999988876
No 124
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.05 E-value=8.1e-06 Score=80.65 Aligned_cols=32 Identities=38% Similarity=0.567 Sum_probs=30.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.++||+||||||||++|++||..+|.+++.+.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~ 53 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLIN 53 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 58999999999999999999999999998876
No 125
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=1.6e-05 Score=84.35 Aligned_cols=68 Identities=16% Similarity=0.304 Sum_probs=42.3
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhh-hhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~-~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.+...|++++..+........+.....+.. ..+.++.+++||||||||||||+.++++.+ |..++.++
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~ 176 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR 176 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee
Confidence 466788888754443322222222211111 112345689999999999999999999876 56666665
No 126
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.03 E-value=9.8e-06 Score=83.16 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=43.5
Q ss_pred CCc-cccCChHHHHHHHHHHHHHHhhhhh-cCCCcceeeecCCCCChHHHHHHHHHHhCc-------ceeeecc
Q 012671 356 NNG-DIILHPSLQRRIQHLAKATANTKIH-QAPFRNMLFYGPPGTGKTMVAREIARKSEE-------MLHLLVH 420 (458)
Q Consensus 356 ~~~-dvi~~~~l~~~l~~l~~~~~~~~~~-~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~-------~~~~~~~ 420 (458)
-|+ ++.|+.+....+- .+......+ ....+-++|+||||||||+||.+|+..++. ++|.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv---~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFV---NYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHH---HHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 455 7888877655433 332222222 223457889999999999999999999987 8888874
No 127
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.4e-05 Score=80.48 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=51.2
Q ss_pred ccCChHHHHHHHHHHHHHHhh------hhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhh
Q 012671 360 IILHPSLQRRIQHLAKATANT------KIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIG 432 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~------~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~g 432 (458)
||||.+.++.+.-..+..|-. -++..-|+|+|+.||+|+|||.+|+.||...|.||+.+-...+.+. +|+|
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEV--GYVG 93 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEV--GYVG 93 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeec--cccc
Confidence 899999998664333322211 1223557999999999999999999999999999999864333332 5666
No 128
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=5.6e-06 Score=89.61 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=41.1
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+..|++|+|++.+...+...+.. +..+..+|||||||||||++|+.+|..++.
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35799999999988876544432 222345899999999999999999998764
No 129
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=5.3e-06 Score=91.33 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=43.6
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
....|+||||++.+.+.|...+.. +..+.++|||||||||||++|++||+.+++.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~-------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE-------GRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 345899999999988877655442 2334578999999999999999999987653
No 130
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=5.8e-06 Score=89.52 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=41.6
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+..|++|+|++.+.+.+...+.. +..+..+|||||||||||++|+.+|..+++
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------QRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------CCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35799999999988876654432 222335799999999999999999999865
No 131
>PRK05642 DNA replication initiation factor; Validated
Probab=97.97 E-value=4e-05 Score=74.52 Aligned_cols=65 Identities=8% Similarity=0.030 Sum_probs=38.3
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.+..+|++++.... ...+..+..+.. .....+..+++||||+|||||||+.++|+++ |..++.++
T Consensus 13 ~~~~tfdnF~~~~~-~~a~~~~~~~~~--~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 13 RDDATFANYYPGAN-AAALGYVERLCE--ADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCcccccccCcCCh-HHHHHHHHHHhh--ccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 45667887773332 112222222211 1112234689999999999999999999764 44444444
No 132
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=8e-06 Score=89.16 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=41.1
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
...|++|+||+.+.+.|...+.. +..+.-+|||||+|||||++|+++|+.++.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------GRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45799999999988877655432 111223799999999999999999998764
No 133
>PHA02244 ATPase-like protein
Probab=97.96 E-value=1.7e-05 Score=81.67 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=30.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeecc
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLVH 420 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~ 420 (458)
.+|||+||||||||++|++||..+|.+|+.++.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 489999999999999999999999999998873
No 134
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=8.8e-06 Score=88.60 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=40.6
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+..|++++|++.+...+...... +..+..+|||||||||||++|+.+|..+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------NKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 44799999999988766543321 23335799999999999999999999875
No 135
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.95 E-value=1.1e-05 Score=82.44 Aligned_cols=53 Identities=28% Similarity=0.377 Sum_probs=41.3
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
....|++++|++.+...+...+.. +..+..+|||||||+|||++|++++..+.
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-------GRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345789999999988876654422 23345789999999999999999998874
No 136
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=9.2e-06 Score=88.80 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=42.6
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
....|+||||++.+.+.|..++... .....+||+||+|||||++|+.||+.+++
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g-------RLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ-------RLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC-------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3457999999999988776554431 22235799999999999999999999876
No 137
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.93 E-value=1.7e-05 Score=87.36 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=56.9
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcce-e-e--eccc---cchhh
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEML-H-L--LVHR---LLPRS 426 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~-~-~--~~~~---~~se~ 426 (458)
..-|++|+|+.++...+...+.. .+|++|+||||||||++|++++..++.+. + . +... ..+-+
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~----------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~ 83 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ----------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRI 83 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc----------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHH
Confidence 34678899999988877655432 24999999999999999999999997652 1 1 1111 11223
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhcCCc
Q 012671 427 MRYLIGRRNQRKACCFLLTRLMHFYASA 454 (458)
Q Consensus 427 ~~~~~ge~~~~~~~i~~lf~~a~~~~p~ 454 (458)
..-+.|...++.. ..|..+++..|+
T Consensus 84 ~~v~~~~g~~~~~---~~~~~~~~~~~~ 108 (608)
T TIGR00764 84 VEVPAGEGREIVE---DYKKKAFKQPSS 108 (608)
T ss_pred HHHHHhhchHHHH---HHHHHhhcccch
Confidence 3344444544433 456666666654
No 138
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=1e-05 Score=88.77 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=41.3
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
...|++|||++.+.+.|..+.... ..+..+|||||+|||||++|++||+.+++
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~-------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ-------RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 358999999999888776554431 22235799999999999999999998864
No 139
>PRK08727 hypothetical protein; Validated
Probab=97.92 E-value=6e-06 Score=80.16 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=33.9
Q ss_pred CCCCCCccccCChHH-HHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 352 EAIKNNGDIILHPSL-QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l-~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+...|+++++.+.. ...+..++. +.....++||||||||||||++++|..+
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~~--------~~~~~~l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALAA--------GQSSDWLYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHHh--------ccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 355578877765542 122222211 1223459999999999999999998775
No 140
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=1.1e-05 Score=87.97 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=41.4
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+..|++|+|++.+.+.+...+.. +.....+|||||||||||++|+.+|..++
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------GKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999988877655443 22334689999999999999999999875
No 141
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=1.2e-05 Score=85.61 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=41.3
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+..|+||+|++.+...+...+.. +..+..+|||||||||||++|+++|..+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------NRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------CCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 35899999999988766654432 223347899999999999999999998753
No 142
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=1e-05 Score=89.53 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=41.7
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
....|++||||+.+.+.|...+.. +.....+|||||+|||||++|+.||+.+++
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~-------gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDG-------GRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345799999999988877654322 222335799999999999999999998865
No 143
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.89 E-value=1.7e-05 Score=81.02 Aligned_cols=40 Identities=33% Similarity=0.517 Sum_probs=31.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhhhh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMRYL 430 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~~~ 430 (458)
.|++||||||||||||+.+||.++ |..++.++ .++++..+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t---~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT---ADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE---HHHHHHHH
Confidence 699999999999999999999987 55555555 55555544
No 144
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=1.2e-05 Score=88.26 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=41.3
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
...|++|+||+.+...|...+.. +.-+..+|||||||||||++|+.+|+.+++
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------DRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45799999999988876553322 122236999999999999999999999876
No 145
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=1.3e-05 Score=88.35 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=41.8
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
...|++|||++.+.+.|...+.. +.....+|||||||||||++|+.+|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 35899999999988877654432 1122346999999999999999999998763
No 146
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.88 E-value=1.1e-05 Score=69.37 Aligned_cols=31 Identities=29% Similarity=0.564 Sum_probs=28.0
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceeeecc
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHLLVH 420 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~ 420 (458)
|++.||||+|||++|+.|+..+|+.++.+..
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6889999999999999999999988877663
No 147
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=1.3e-05 Score=89.07 Aligned_cols=54 Identities=30% Similarity=0.383 Sum_probs=42.1
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+..|++|+||+.+.+.|...+.. +..+..+|||||||||||++|+.+|..+.+
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~-------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKS-------NKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 345799999999988876655432 223346899999999999999999998765
No 148
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=1.4e-05 Score=87.65 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=41.2
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
...|++|||++.+.+.|...+.. +.....+|||||||||||++|+.+|..++.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------GRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------CCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45799999999988877654432 112236799999999999999999998753
No 149
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.87 E-value=5.7e-05 Score=72.73 Aligned_cols=56 Identities=25% Similarity=0.369 Sum_probs=32.4
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..+|+++|..+.....+. .+..... .....+..+++|||+|+|||||..+++++.
T Consensus 3 ~~~tFdnfv~g~~N~~a~~-~~~~ia~--~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYA-AAKAIAE--NPGERYNPLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp TT-SCCCS--TTTTHHHHH-HHHHHHH--STTTSSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCccccCCcCCcHHHHHH-HHHHHHh--cCCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4557887764443222222 1111111 112234468999999999999999999875
No 150
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=1.5e-05 Score=87.48 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=43.0
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
...|++|+|++.+.+.|...... +..+..+|||||||||||++|++||+.+++.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------GRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 45899999999888877654332 2334579999999999999999999998654
No 151
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.86 E-value=1e-05 Score=82.13 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=31.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.++|||.||||||||++++.||..+|++++.+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~ 96 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVN 96 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999999999999999999886
No 152
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.86 E-value=1.6e-05 Score=77.39 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=42.7
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
+...+++++|.+.-++.|. ..+... ..+.|..|+||||++|||||+++++|..+....-+.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~---~Nt~~F-l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLR 82 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALI---ENTEQF-LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLR 82 (249)
T ss_pred CCCCHHHhcCHHHHHHHHH---HHHHHH-HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCce
Confidence 5567888888776555433 222111 234677899999999999999999999987544333
No 153
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=1.6e-05 Score=86.97 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=41.6
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
...|++|+|++++.+.|...+.. +..+..+|||||||||||++|+++|..++.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------GRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 35899999999988777654432 223346799999999999999999999864
No 154
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=1.7e-05 Score=86.49 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=42.0
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+..|++|+||+.+...+...+.. +..+..+|||||||||||++|+++|+.++.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------NKIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 45799999999988877655432 222346999999999999999999998864
No 155
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.83 E-value=9e-06 Score=71.66 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=23.5
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
||||.|+||+|||++|++||..+|.+|..|-
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq 31 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQ 31 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEE
Confidence 6899999999999999999999999998764
No 156
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=1.9e-05 Score=86.39 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=42.6
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
....|++|+|++.+.+.|...+.. +.-..++|||||||||||++|+.||+.++.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~-------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQE-------NRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 345799999999988777655432 111248999999999999999999999875
No 157
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.81 E-value=1.6e-05 Score=81.37 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=38.6
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
....|++|+|+++++..+.-.+.. . ...|+||+||||||||++|++|+..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~---~-----~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID---P-----GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc---c-----CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 345788999999887765422111 1 12489999999999999999999998
No 158
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.80 E-value=1.9e-05 Score=71.81 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
++.+|+|+||||||||++|+.||..+|.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 456899999999999999999999999988764
No 159
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=2.4e-05 Score=88.64 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=41.5
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
....|++||||+.+.+.|...+.. +.....+|||||+|||||++|+.||+.+++
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~-------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDS-------GRINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh-------CCCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 345799999999988876655432 111224899999999999999999999864
No 160
>PRK06921 hypothetical protein; Provisional
Probab=97.78 E-value=4.4e-05 Score=75.73 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=27.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh----Ccceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS----EEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~----g~~~~~~~ 419 (458)
..+++|+||||||||||+.+||+++ |..++.++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 5689999999999999999999986 44555554
No 161
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=7.4e-05 Score=79.51 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=44.1
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh-----Ccceeeeccccchhhhh
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----EEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~-----g~~~~~~~~~~~se~~~ 428 (458)
...|++++..+.....+...... ....+.++.+++||||||||||||+.++++++ +..++.++ ..+++.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~---a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~---~~~f~~ 184 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTV---SKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS---GDEFAR 184 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHH---HhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE---HHHHHH
Confidence 46788777555432222211111 11223345679999999999999999999965 34555555 455555
Q ss_pred hhhh
Q 012671 429 YLIG 432 (458)
Q Consensus 429 ~~~g 432 (458)
.+..
T Consensus 185 ~~~~ 188 (450)
T PRK14087 185 KAVD 188 (450)
T ss_pred HHHH
Confidence 4443
No 162
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.77 E-value=3e-05 Score=77.82 Aligned_cols=50 Identities=32% Similarity=0.563 Sum_probs=38.6
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..|++++++.+....+...+.. +. ..++|||||||||||+++++++..+.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE------KN--MPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC------CC--CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 5788899998877766544321 11 23799999999999999999999873
No 163
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=2.9e-05 Score=80.32 Aligned_cols=44 Identities=27% Similarity=0.466 Sum_probs=35.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh-hhhhhh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR-YLIGRR 434 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~-~~~ge~ 434 (458)
.||||.||+|+|||+||+.||+.++.||++-. +..+-. +|+|+-
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcD---cTtLTQAGYVGeD 271 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICD---CTTLTQAGYVGED 271 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEec---ccchhhccccccc
Confidence 49999999999999999999999999998855 433332 666643
No 164
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.77 E-value=4.8e-05 Score=80.24 Aligned_cols=27 Identities=44% Similarity=0.744 Sum_probs=24.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+|++|+||||||||++|+.||..++.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 369999999999999999999998853
No 165
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=2.8e-05 Score=83.47 Aligned_cols=54 Identities=30% Similarity=0.340 Sum_probs=40.7
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+..|++++|++.+...+...+.. +.....+|||||||||||++|+.+|..++.
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~-------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL-------QRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345799999999988866544322 122235789999999999999999998763
No 166
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=3.1e-05 Score=85.40 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=43.2
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
....|++++|++.+...|..++... .-..++|||||||||||++|+++|+.++.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~-------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN-------RIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC-------CCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 3457999999999888776655431 12248999999999999999999999876
No 167
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.76 E-value=0.00016 Score=74.21 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=34.5
Q ss_pred ccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 358 ~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+++++.+.-.+.|......... +..+.++++|||||||||++++.++.++.
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~----~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR----GSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc----CCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567766555544443332211 23346899999999999999999998763
No 168
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=3.2e-05 Score=83.50 Aligned_cols=52 Identities=27% Similarity=0.286 Sum_probs=41.0
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+..|++|+||+.+.+.+...+.. +..+..+|||||||||||++|++++..+.
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-------NRLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 45899999999998877655432 22234569999999999999999999874
No 169
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.73 E-value=0.00017 Score=74.94 Aligned_cols=35 Identities=31% Similarity=0.561 Sum_probs=28.4
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh-----Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS-----EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~-----g~~~~~~~ 419 (458)
..+.++++|||||||||++++.++.++ +..++.++
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in 92 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN 92 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 344689999999999999999999887 45565555
No 170
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.71 E-value=5.5e-05 Score=74.90 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=50.6
Q ss_pred ccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC--cceeeeccccchhhhhhhhh
Q 012671 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE--EMLHLLVHRLLPRSMRYLIG 432 (458)
Q Consensus 358 ~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g--~~~~~~~~~~~se~~~~~~g 432 (458)
+.+||+....+...-+.......+. ..|.+||.||||||||-||-++++++| .+|.-|+ +|+..+.-+.
T Consensus 38 ~g~vGQ~~AReAagiivdlik~Kkm---aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmv---gSEvyS~EvK 108 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIVDLIKSKKM---AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMV---GSEVYSNEVK 108 (456)
T ss_pred cccccchhhhhhhhHHHHHHHhhhc---cCcEEEEecCCCCchhHHHHHHHHHhCCCCCccccc---chhhhhhhhh
Confidence 3478888877765544444433333 357999999999999999999999997 6888888 6666554333
No 171
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.70 E-value=7.2e-05 Score=65.95 Aligned_cols=23 Identities=35% Similarity=0.904 Sum_probs=22.0
Q ss_pred eeeecCCCCChHHHHHHHHHHhC
Q 012671 390 MLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g 412 (458)
|+|+||||+|||++|+.|+..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999999998
No 172
>PHA00729 NTP-binding motif containing protein
Probab=97.70 E-value=2.3e-05 Score=75.72 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=24.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+.|++++|||||||||||.+|+..++
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35999999999999999999999876
No 173
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.68 E-value=0.00018 Score=63.31 Aligned_cols=49 Identities=24% Similarity=0.313 Sum_probs=34.5
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCccee--eecCCCCChHHHHHHHHHHh
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNML--FYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvL--l~GPPGTGKT~lAkaLA~~~ 411 (458)
+.||+-+.+.+-..+...... ..|.+.++ |+||||||||++++.||..+
T Consensus 27 l~GQhla~~~v~~ai~~~l~~---~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLAN---PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcC---CCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 788888777554444333221 24444444 89999999999999999996
No 174
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.68 E-value=3.3e-05 Score=65.85 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=30.5
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcce------eeeccccchhhhhhhhh
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEML------HLLVHRLLPRSMRYLIG 432 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~------~~~~~~~~se~~~~~~g 432 (458)
|.||||||||||++|..|+..+...+ ....+....++.++|.|
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~ 49 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQG 49 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCC
Confidence 57999999999999999887765221 11123446777777777
No 175
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=7.1e-05 Score=80.45 Aligned_cols=69 Identities=26% Similarity=0.385 Sum_probs=57.8
Q ss_pred hcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 383 HQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 383 ~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+..|++++++|||||||||+++++++.. +..+..+. .+..+.+++|.... ..+.+|..++.+.|+|||+
T Consensus 14 ~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 14 GIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSIN---GPEILSKYVGESEL---RLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred CCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccC---cchhhhhhhhHHHH---HHHHHHHHHHHhCCCeEee
Confidence 4578899999999999999999999999 55553444 89999999998754 4567888899999999985
No 176
>PRK09087 hypothetical protein; Validated
Probab=97.64 E-value=7.8e-05 Score=72.20 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=38.9
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.+..+|++++..+.....+..+..+. ..+...++||||||||||||++++|...+..|+..
T Consensus 15 ~~~~~~~~Fi~~~~N~~a~~~l~~~~------~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~ 75 (226)
T PRK09087 15 DPAYGRDDLLVTESNRAAVSLVDHWP------NWPSPVVVLAGPVGSGKTHLASIWREKSDALLIHP 75 (226)
T ss_pred CCCCChhceeecCchHHHHHHHHhcc------cCCCCeEEEECCCCCCHHHHHHHHHHhcCCEEecH
Confidence 35557888885443233333222211 11223489999999999999999998877666543
No 177
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=8.3e-05 Score=80.99 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=59.9
Q ss_pred ccccCChHHHHHHHH-HHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc-eeeeccccchhhhhhhhhhhh
Q 012671 358 GDIILHPSLQRRIQH-LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM-LHLLVHRLLPRSMRYLIGRRN 435 (458)
Q Consensus 358 ~dvi~~~~l~~~l~~-l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~-~~~~~~~~~se~~~~~~ge~~ 435 (458)
.|++.-+..++.... .... .....||||+||+|||||.|+++|+.+...+ ++++...+++.+-.+-+-
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e--- 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE--- 477 (952)
T ss_pred Cceeecchhhhhhhhhhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH---
Confidence 356666666663322 1111 2234599999999999999999999998644 444555557665544322
Q ss_pred hhhhhhHHHHHHhhhcCCceeeC
Q 012671 436 QRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 436 ~~~~~i~~lf~~a~~~~p~iifi 458 (458)
++...+-..|.++.-++|+||++
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvL 500 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVL 500 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEE
Confidence 23335556777899999999974
No 178
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.63 E-value=8.2e-05 Score=80.35 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=42.6
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
...+|+..++.- +.++..|.........+.+-+||+||||||||++.+.||.++|..+....
T Consensus 16 ~~~~eLavhkkK---v~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 16 KTLDELAVHKKK---VEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred CCHHHhhccHHH---HHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 356667777643 33333443332233334456778999999999999999999999887753
No 179
>PRK13947 shikimate kinase; Provisional
Probab=97.59 E-value=5.5e-05 Score=69.16 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=28.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.||++.||||||||++++.||..+|.+|+..
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4899999999999999999999999998764
No 180
>PRK08118 topology modulation protein; Reviewed
Probab=97.58 E-value=5.4e-05 Score=69.83 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=28.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
..|+++||||+|||++|+.|+..+|++++.+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 36899999999999999999999999977765
No 181
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.56 E-value=9.3e-05 Score=78.74 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=33.6
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
|+|.+++.+.+...+.. ..|+||+||||||||++|++|+..++.
T Consensus 22 i~gre~vI~lll~aala----------g~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 22 LYERSHAIRLCLLAALS----------GESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred ccCcHHHHHHHHHHHcc----------CCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 67777766655433222 359999999999999999999998754
No 182
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.56 E-value=6.2e-05 Score=67.25 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=28.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+|+|+||||+|||++|+.|+..+|++++...
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 6899999999999999999999999887643
No 183
>PRK14532 adenylate kinase; Provisional
Probab=97.54 E-value=6.3e-05 Score=70.06 Aligned_cols=30 Identities=23% Similarity=0.531 Sum_probs=27.1
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+++|+||||+|||++|+.||..+|+.++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 689999999999999999999999877654
No 184
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.54 E-value=0.00011 Score=79.77 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=38.5
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
....|++++|+....+.+.... ....+.++|||||||||||++|++|...+
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al--------~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAAL--------CGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHH--------hCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467999999998777665321 11224599999999999999999998753
No 185
>PRK00625 shikimate kinase; Provisional
Probab=97.52 E-value=7.1e-05 Score=69.55 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=28.6
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
||+|.|+||+|||++++.||..+|++|+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 7999999999999999999999999887654
No 186
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00017 Score=72.41 Aligned_cols=24 Identities=50% Similarity=0.915 Sum_probs=23.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHhC
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+|||||||||||.+|.+||+.++
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHh
Confidence 499999999999999999999998
No 187
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.51 E-value=5.3e-05 Score=68.21 Aligned_cols=32 Identities=34% Similarity=0.503 Sum_probs=30.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.|||+.|-||||||+++..||..+|+.|+.|+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 39999999999999999999999999998876
No 188
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.51 E-value=7.3e-05 Score=76.21 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=30.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+++||-||||||||++|+.+|..+|.+|+.+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~ 75 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQ 75 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEe
Confidence 59999999999999999999999999999876
No 189
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.50 E-value=0.00038 Score=70.55 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 364 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 364 ~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
++-.+.+..++...........|..+|+|.|+||||||++++.||..+|.+|+.+.
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 110 PAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 44444555565554444444567789999999999999999999999999998643
No 190
>PRK03839 putative kinase; Provisional
Probab=97.48 E-value=8.4e-05 Score=68.79 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=28.1
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.|+|.||||+|||++++.||..+|.+++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4889999999999999999999999887654
No 191
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.48 E-value=8.9e-05 Score=68.52 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=26.1
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
|+++||||+|||++|+.||..+|+.++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68899999999999999999999877665
No 192
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.46 E-value=0.00014 Score=79.47 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=48.0
Q ss_pred CCccccCChHHHH-HHHHHHHHHHhhhh------------------------hcCCC-cceeeecCCCCChHHHHHHHHH
Q 012671 356 NNGDIILHPSLQR-RIQHLAKATANTKI------------------------HQAPF-RNMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 356 ~~~dvi~~~~l~~-~l~~l~~~~~~~~~------------------------~~~p~-rnvLl~GPPGTGKT~lAkaLA~ 409 (458)
.|.|+.+.+...+ .|.||..|+..... ...|. +-+||+||||-|||+||..+|+
T Consensus 269 ~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAk 348 (877)
T KOG1969|consen 269 KFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAK 348 (877)
T ss_pred HHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHH
Confidence 5667777776666 56666665322111 01333 4677899999999999999999
Q ss_pred HhCcceeeecccc
Q 012671 410 KSEEMLHLLVHRL 422 (458)
Q Consensus 410 ~~g~~~~~~~~~~ 422 (458)
++|+.++.|+..|
T Consensus 349 qaGYsVvEINASD 361 (877)
T KOG1969|consen 349 QAGYSVVEINASD 361 (877)
T ss_pred hcCceEEEecccc
Confidence 9999999998554
No 193
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00016 Score=76.48 Aligned_cols=69 Identities=25% Similarity=0.277 Sum_probs=50.2
Q ss_pred cCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhhhcCCceee
Q 012671 384 QAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMHFYASATVY 457 (458)
Q Consensus 384 ~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iif 457 (458)
..|..++||+||||+|||.||-.+|..++.||+.+. .++.|-++.- ..+ -.++.-.|+.+.+..=+||.
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKii---Spe~miG~sE-saK-c~~i~k~F~DAYkS~lsiiv 603 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKII---SPEDMIGLSE-SAK-CAHIKKIFEDAYKSPLSIIV 603 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEe---ChHHccCccH-HHH-HHHHHHHHHHhhcCcceEEE
Confidence 456789999999999999999999999999999987 4554433322 322 34566667777655555554
No 194
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00015 Score=67.05 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=29.6
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.|++|.|++|+|||++.+.||+.+|++|+.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 58999999999999999999999999998754
No 195
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.00014 Score=80.10 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=40.7
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
...|++|+|++.+...|...+.. +..+..+|||||+|+|||++|+.+|..+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------NKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999988876554332 22234589999999999999999999875
No 196
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.45 E-value=0.00011 Score=80.87 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=45.0
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.+..++++++++.....|..++... .....+.+-++|+||||||||++++.||..++.++..
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~---~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQ---VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhc---ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 4557889999998777655443322 1222333458899999999999999999999877644
No 197
>PRK14531 adenylate kinase; Provisional
Probab=97.44 E-value=0.00011 Score=68.54 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=27.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..|+++||||+|||++++.||..+|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999999887654
No 198
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.00018 Score=72.87 Aligned_cols=50 Identities=28% Similarity=0.341 Sum_probs=38.1
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.|++|+|++.+.+.+...... +..+..+|||||+|+|||.+|+.++..+.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------NRFSHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------CCCCceEEeECCCCCCHHHHHHHHHHHHc
Confidence 488999999887766544321 22234679999999999999999999763
No 199
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.41 E-value=0.00012 Score=75.28 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=40.6
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.....|++|+|+++++..|...+.. ....++||+||+|||||++++.++..+.
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~--------p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVID--------PKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccC--------CCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3566899999999988866432222 1235899999999999999999988763
No 200
>PRK13949 shikimate kinase; Provisional
Probab=97.41 E-value=0.00012 Score=67.60 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=29.0
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
++|+|+||||+|||++++.||..+|++++.+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 47999999999999999999999999887754
No 201
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.40 E-value=0.00013 Score=67.87 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=27.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+|+++||||+|||++|+.||..+|..++.+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 489999999999999999999999887664
No 202
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.38 E-value=0.00024 Score=78.54 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=36.5
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
...|++++|+......+...+ . ...+.+++|+||||||||++|+.|.+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~i---a-----~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKV---A-----SPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHH---h-----cCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 347888999887666543221 1 1123589999999999999999998765
No 203
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.00024 Score=73.69 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=40.8
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+..|++|+||+.+.+.+...... +..+..+||+||+|+||+++|.++|+.+-
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-------GRLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 344788899999988877644333 22233699999999999999999999874
No 204
>PTZ00121 MAEBL; Provisional
Probab=97.35 E-value=0.042 Score=64.09 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=15.4
Q ss_pred eeecCCCCChHH-HHHHHHHHh
Q 012671 391 LFYGPPGTGKTM-VAREIARKS 411 (458)
Q Consensus 391 Ll~GPPGTGKT~-lAkaLA~~~ 411 (458)
+++|+.--.+|- ||+.|+..|
T Consensus 1961 issgtCS~eerk~LCCSISdYC 1982 (2084)
T PTZ00121 1961 ISSGNCSDEERKELCCSISDFC 1982 (2084)
T ss_pred cCCCCCChhhhhchhhhHHHHH
Confidence 347777777775 888888766
No 205
>PRK13948 shikimate kinase; Provisional
Probab=97.34 E-value=0.0002 Score=67.14 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=31.3
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.++++|+|.|++|||||++++.||..+|.+|+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45689999999999999999999999999987644
No 206
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.33 E-value=0.00029 Score=76.22 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=41.2
Q ss_pred CCccccCChHHHHHHHHHH-HHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC-cceeeec
Q 012671 356 NNGDIILHPSLQRRIQHLA-KATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE-EMLHLLV 419 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~-~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g-~~~~~~~ 419 (458)
-|+|+.|..+...++-... ...... ....+-++|+||||+|||+||++|+..+. .++|.+.
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl---~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~k 136 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGL---EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLK 136 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhc---CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeec
Confidence 5777888877766543333 222221 23345788999999999999999998874 4565554
No 207
>PRK14528 adenylate kinase; Provisional
Probab=97.32 E-value=0.00018 Score=67.45 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
++++++||||+|||++|+.|+..+|.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4799999999999999999999999887654
No 208
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.32 E-value=0.00018 Score=63.50 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=27.7
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+++.||||||||++|+.|+..+|++++...
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999998765
No 209
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.31 E-value=0.00024 Score=78.40 Aligned_cols=52 Identities=27% Similarity=0.378 Sum_probs=41.9
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
+...|++|+++.++...|...+.. .+++||+||||||||+++++++..++..
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~----------~~~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQ----------RRHVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHh----------CCeEEEECCCCCcHHHHHHHHHHHcChH
Confidence 446789999999988877654432 1489999999999999999999988643
No 210
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.00034 Score=73.07 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=41.1
Q ss_pred CCCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 351 ~~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..+..+|+++|..+...-.......+.. .++.++.-++||||+|.|||||..++|++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~---~~g~~~nplfi~G~~GlGKTHLl~Aign~~~ 138 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAE---NPGGAYNPLFIYGGVGLGKTHLLQAIGNEAL 138 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHh---ccCCcCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577789888866664443332222222 2233567899999999999999999999884
No 211
>PRK14530 adenylate kinase; Provisional
Probab=97.31 E-value=0.00019 Score=68.63 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=27.4
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+|+|.||||+|||++|+.||..+|++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 799999999999999999999999887743
No 212
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0003 Score=71.49 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=40.3
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.|++|+|++.+...+...+... .-+..+|||||+|+||+.+|.++|..+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-------rl~ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-------RIAPAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-------CCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 5889999999988777655432 2234899999999999999999999874
No 213
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.28 E-value=0.00025 Score=78.58 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=36.5
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.|.+|+|++.++..+.-.+.. .. ..+|||+||||||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~---~~-----~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD---PR-----IGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC---CC-----CCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 467799999888655422221 11 2379999999999999999999988
No 214
>PLN02200 adenylate kinase family protein
Probab=97.28 E-value=0.00026 Score=68.88 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=27.9
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.+..++++||||+|||++|+.|+..+|+.++.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~ 74 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSA 74 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEc
Confidence 345788999999999999999999999765543
No 215
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.28 E-value=0.0002 Score=66.07 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=27.6
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+.++|.||||+|||++|+.|+..++.+++++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~ 34 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFG 34 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence 57889999999999999999999887766543
No 216
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.26 E-value=0.00021 Score=64.84 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=24.7
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
++|.||||||||++|+.|+..+|..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866654
No 217
>PRK07261 topology modulation protein; Provisional
Probab=97.24 E-value=0.00025 Score=65.56 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=27.7
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.|+++||||+|||+||+.|+..+|.+++.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 4789999999999999999999998877754
No 218
>PRK13946 shikimate kinase; Provisional
Probab=97.23 E-value=0.00026 Score=66.06 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=29.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.++|+|.|+||||||++++.||..+|++|+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 368999999999999999999999999987644
No 219
>PRK06217 hypothetical protein; Validated
Probab=97.23 E-value=0.00027 Score=65.82 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=28.2
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.|++.|+||+|||++|+.|+..+|.+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 6899999999999999999999999887654
No 220
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00022 Score=65.85 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=27.6
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
++++.|.||||||++|+.|+ .+|..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 57899999999999999999 9999998865
No 221
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.00043 Score=71.38 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=41.3
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+..|++++||..+...+...... +..+..+||+||+|+|||++|..+|+.+..
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-------grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-------GKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-------CCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 44788899999888877655433 222346999999999999999999999865
No 222
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.00026 Score=64.65 Aligned_cols=28 Identities=43% Similarity=0.538 Sum_probs=25.8
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
+-+.||||||||++|+.||.++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4578999999999999999999999987
No 223
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.19 E-value=0.00029 Score=62.98 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=24.8
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
++|+||||+|||++|+.|+..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6789999999999999999998876654
No 224
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.16 E-value=0.00036 Score=63.87 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=28.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.+++|.|+||||||++++.||..+|.+|+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 47899999999999999999999999987643
No 225
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.16 E-value=0.00091 Score=61.82 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=27.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
..+||++|++||||+++|++|-..+. .+|+.++
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vn 57 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVN 57 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEe
Confidence 36999999999999999999999874 5788877
No 226
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.16 E-value=0.00034 Score=64.62 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=26.2
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
-+++.||||+|||++|+.|+..+|+.++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 578899999999999999999998776543
No 227
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.15 E-value=0.00033 Score=66.72 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=26.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.|+++||||+|||++|+.||..+|+.++.+
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 378999999999999999999999877654
No 228
>PRK02496 adk adenylate kinase; Provisional
Probab=97.15 E-value=0.00034 Score=64.92 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=26.6
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.++++||||+|||++|+.|+..+|.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 588999999999999999999998877653
No 229
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.14 E-value=0.0004 Score=64.30 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=29.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
..+|+|.||||+|||++++.|+..+|++++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 358999999999999999999999999887654
No 230
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.13 E-value=0.00035 Score=69.63 Aligned_cols=49 Identities=24% Similarity=0.256 Sum_probs=34.0
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCc--ceeeecCCCCChHHHHHHHHHHh
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFR--NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~r--nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+.||+-.+..|-..+...++.. .|.+ -+-|||+|||||.++++.||..+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~---~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP---NPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC---CCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 5677777765555544444332 2333 33489999999999999999987
No 231
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.12 E-value=0.00037 Score=67.65 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=27.9
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.|+|+||||+|||++|+.||..+|++++.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 4999999999999999999999998887643
No 232
>PRK06762 hypothetical protein; Provisional
Probab=97.11 E-value=0.00046 Score=62.85 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=26.6
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.-++|+|+||+|||++|+.|+..++..++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 46789999999999999999999865555544
No 233
>PHA02624 large T antigen; Provisional
Probab=97.08 E-value=0.0007 Score=73.58 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=26.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+.+|||||||||||+|+.+|...+|-..+.++
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVN 463 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVN 463 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEee
Confidence 47889999999999999999999944344454
No 234
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.08 E-value=0.00044 Score=66.04 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=27.1
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.|+++||||+|||++|+.||..+|+.++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999877764
No 235
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.07 E-value=0.00049 Score=59.60 Aligned_cols=24 Identities=42% Similarity=0.841 Sum_probs=20.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+.++++||||+|||++++.++..+
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999987
No 236
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.07 E-value=0.00096 Score=72.54 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=45.0
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.....|++++|.......+...+.... ....+|||+|+||||||++|++|...+ +.+|+.++
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~ 254 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVN 254 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEee
Confidence 445678889998876554443333321 223589999999999999999999886 45787776
No 237
>PRK04040 adenylate kinase; Provisional
Probab=97.06 E-value=0.00049 Score=64.77 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=25.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh--Cccee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS--EEMLH 416 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~--g~~~~ 416 (458)
+..++++|+||||||++++.|+..+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 4578999999999999999999999 55554
No 238
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.06 E-value=0.00042 Score=66.86 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=20.0
Q ss_pred cceeeecCCCCChHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~ 409 (458)
..+|||||||||||++|+.++.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 5699999999999999999973
No 239
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.06 E-value=0.0011 Score=64.64 Aligned_cols=30 Identities=30% Similarity=0.550 Sum_probs=25.4
Q ss_pred eeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 390 MLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
|+|+|+||+|||++|+.|+..+ |.++..+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 6899999999999999999987 45665554
No 240
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.05 E-value=0.00035 Score=70.13 Aligned_cols=53 Identities=28% Similarity=0.358 Sum_probs=39.7
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
....++||+++.+....+..+. ..+.- .|+|||||||||||...-+.|..+-.
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~------~~~~l--Ph~L~YgPPGtGktsti~a~a~~ly~ 88 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYS------GMPGL--PHLLFYGPPGTGKTSTILANARDFYS 88 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhc------cCCCC--CcccccCCCCCCCCCchhhhhhhhcC
Confidence 4556788999988777666551 12222 39999999999999999999988754
No 241
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.05 E-value=0.00062 Score=62.32 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=20.4
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
..+++++++||||||||++.+.+...+...
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 445799999999999999999888877554
No 242
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.04 E-value=0.00068 Score=71.00 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=28.0
Q ss_pred HHHHHHHH-HHhhhhhcCCCcceeeecCCCCChHHHHHHHHHH
Q 012671 369 RIQHLAKA-TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 369 ~l~~l~~~-~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.+..|+.. .+.... .|+++.|||||||||++++|+..
T Consensus 195 k~~~L~rl~~fve~~-----~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 195 KLLLLARLLPLVEPN-----YNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHHHHhhHHHHhcC-----CcEEEECCCCCCHHHHHHHHhHH
Confidence 45555555 333222 49999999999999999999887
No 243
>PRK06547 hypothetical protein; Provisional
Probab=97.03 E-value=0.00082 Score=62.39 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=29.3
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.++..|+++||||+|||++|+.|+..++..++.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 44557888999999999999999999988776654
No 244
>PF13245 AAA_19: Part of AAA domain
Probab=97.03 E-value=0.00079 Score=54.03 Aligned_cols=31 Identities=39% Similarity=0.565 Sum_probs=20.9
Q ss_pred ceeeecCCCCChH-HHHHHHHHHh------Ccceeeec
Q 012671 389 NMLFYGPPGTGKT-MVAREIARKS------EEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT-~lAkaLA~~~------g~~~~~~~ 419 (458)
-+++.|||||||| +++..++... +..++.++
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a 49 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA 49 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 4556999999999 5555666555 44455554
No 245
>PRK14527 adenylate kinase; Provisional
Probab=97.02 E-value=0.00049 Score=64.47 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=27.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+.-++++||||+|||++|+.|+..+|...+.+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 34689999999999999999999998766543
No 246
>PLN02674 adenylate kinase
Probab=97.00 E-value=0.00058 Score=66.89 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=28.4
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.+..+++|.||||+|||++|+.||..+|+.++.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 334689999999999999999999999876654
No 247
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.00057 Score=63.81 Aligned_cols=28 Identities=36% Similarity=0.653 Sum_probs=24.3
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
+|++.||||+|||++|+.|+..++++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 6899999999999999999999665443
No 248
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0011 Score=68.73 Aligned_cols=46 Identities=33% Similarity=0.439 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 368 RRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 368 ~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
..++.+.......-.+ ..+.|+++|||||||||.+++-++.++..+
T Consensus 24 ~ei~~l~~~l~~~~~~-~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 24 EEINQLASFLAPALRG-ERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred HHHHHHHHHHHHHhcC-CCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 3455555554333333 344589999999999999999999998544
No 249
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.98 E-value=0.00072 Score=64.59 Aligned_cols=35 Identities=34% Similarity=0.384 Sum_probs=27.3
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeeccccc
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLL 423 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~ 423 (458)
-++++||+|||||.+|..||+.+|.+++...++.+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 46899999999999999999999999998876533
No 250
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.96 E-value=0.0031 Score=71.13 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.2
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+++|||||||||.+++.+..++
T Consensus 783 vLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999998776
No 251
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.96 E-value=0.00052 Score=64.75 Aligned_cols=22 Identities=45% Similarity=0.693 Sum_probs=17.0
Q ss_pred eeeecCCCCChHHHHHHHHHHh
Q 012671 390 MLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.++.||||||||++...+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7889999999998666666655
No 252
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.96 E-value=0.00074 Score=69.26 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=35.9
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.|..|+|+++++..+.-.+.. ....++|+.||||||||+++++|+..+
T Consensus 2 pf~~ivgq~~~~~al~~~~~~--------~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID--------PKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcC--------CCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 467799999888755322111 113489999999999999999999877
No 253
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.94 E-value=0.00059 Score=61.34 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.1
Q ss_pred eecCCCCChHHHHHHHHHHhCcceee
Q 012671 392 FYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 392 l~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
++||||+|||++|+.||...|+.++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999999876654
No 254
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.00088 Score=68.47 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=36.1
Q ss_pred CccccC-ChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 357 NGDIIL-HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 357 ~~dvi~-~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
|+.|+| |+.+.+.+...... +..+..+|||||+|+|||.+|+.++..+.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~-------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAK-------NRLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 566777 77777766544322 23334679999999999999999998864
No 255
>PHA02774 E1; Provisional
Probab=96.90 E-value=0.0014 Score=70.98 Aligned_cols=31 Identities=29% Similarity=0.558 Sum_probs=25.8
Q ss_pred cCCC-cceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 384 QAPF-RNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 384 ~~p~-rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
+.|. .+++||||||||||+||-+|.+.++-.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~ 461 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGK 461 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3454 479999999999999999999998533
No 256
>PRK14526 adenylate kinase; Provisional
Probab=96.90 E-value=0.00077 Score=64.62 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=25.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
+++|+||||+|||++++.|+..+|+.++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 58899999999999999999998877654
No 257
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.89 E-value=0.0007 Score=58.05 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.2
Q ss_pred eeeecCCCCChHHHHHHHHHHhC
Q 012671 390 MLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g 412 (458)
|++.|+||+|||++|+.|+..+|
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~ 23 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG 23 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999999973
No 258
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.88 E-value=0.0018 Score=57.63 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=25.7
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
+...++|.|+.|+|||+|++.++..+|.+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34578899999999999999999999875
No 259
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.00071 Score=72.66 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=43.4
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
+..|+||+|+..+.+.|......... .-..||.||-|||||++|+.+|.-+++.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri-------~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRI-------AHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcc-------hhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 45799999999988888766554332 2378999999999999999999988654
No 260
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.87 E-value=0.00074 Score=72.77 Aligned_cols=47 Identities=34% Similarity=0.491 Sum_probs=36.4
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+|++|+|+..+.+.+...+ ....+++|+||||||||++++.|+..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa----------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA----------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc----------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 47899999988766554221 223589999999999999999999754
No 261
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.86 E-value=0.001 Score=58.97 Aligned_cols=22 Identities=41% Similarity=0.780 Sum_probs=20.6
Q ss_pred eeeecCCCCChHHHHHHHHHHh
Q 012671 390 MLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++++||||||||+++..++..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999887
No 262
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.84 E-value=0.0017 Score=70.57 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=43.1
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHH-----------hCcceeeec
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK-----------SEEMLHLLV 419 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~-----------~g~~~~~~~ 419 (458)
..|++++|.......+...+.... ....+||++|+|||||+++|++|-.. .+-+|+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 468889998876555544433221 12348999999999999999999887 346788877
No 263
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.82 E-value=0.0015 Score=69.81 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=29.9
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.+.+-+||+||+|||||+..+-|+.++|..+...+
T Consensus 108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 34456788999999999999999999999887744
No 264
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.80 E-value=0.0016 Score=60.01 Aligned_cols=31 Identities=32% Similarity=0.364 Sum_probs=24.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.+|++||||||||+|+..++... |-..+.++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 37899999999999998887654 55555555
No 265
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.80 E-value=0.0024 Score=60.65 Aligned_cols=29 Identities=31% Similarity=0.356 Sum_probs=25.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
.-++++|+||+|||++|+.|+..+|..++
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 46789999999999999999999987653
No 266
>PLN02459 probable adenylate kinase
Probab=96.78 E-value=0.0011 Score=65.48 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.9
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+++|.||||+|||++|+.|+..+|+.++.+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 688899999999999999999999877653
No 267
>PRK04182 cytidylate kinase; Provisional
Probab=96.77 E-value=0.0011 Score=60.51 Aligned_cols=29 Identities=41% Similarity=0.489 Sum_probs=26.6
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.|++.|+||||||++++.||..+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47889999999999999999999998876
No 268
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.76 E-value=0.0017 Score=50.85 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=23.8
Q ss_pred eeeecCCCCChHHHHHHHHHHh-Ccceeeec
Q 012671 390 MLFYGPPGTGKTMVAREIARKS-EEMLHLLV 419 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~-g~~~~~~~ 419 (458)
+.+.||||+|||++++.|+..+ +.++..+.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 5688999999999999999986 34444443
No 269
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.75 E-value=0.0019 Score=57.32 Aligned_cols=27 Identities=41% Similarity=0.655 Sum_probs=23.5
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
..+||++|+|||||+++|++|....+-
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 358999999999999999999998864
No 270
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.75 E-value=0.0012 Score=59.91 Aligned_cols=29 Identities=41% Similarity=0.563 Sum_probs=26.5
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
|.++|+||+|||++|+.|+..+|.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 67899999999999999999999887764
No 271
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.75 E-value=0.0042 Score=58.69 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=24.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.-++++||||||||.+|..++... |...+.++
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 457789999999999999988654 44455554
No 272
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.74 E-value=0.0012 Score=60.93 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.6
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
++..++|.||||+|||++++.|+..++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3458889999999999999999999863
No 273
>PRK06696 uridine kinase; Validated
Probab=96.73 E-value=0.0031 Score=60.62 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=27.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
+.-|.+.||||+|||+||+.|+..+ |.+++.++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4467789999999999999999998 66666643
No 274
>PRK14529 adenylate kinase; Provisional
Probab=96.72 E-value=0.0011 Score=64.10 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=26.4
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
+|+|.||||+|||++++.|+..++++++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 58999999999999999999999987763
No 275
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.72 E-value=0.0019 Score=72.46 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=41.6
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
..|++++|.......+..-+.... ....+||++|+||||||++|++|...+. .+|+.++
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~ 434 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 434 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEe
Confidence 468889988765554433322211 1234899999999999999999998763 5677665
No 276
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.70 E-value=0.0017 Score=60.44 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=23.8
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+..+|||||||+|||.+|+.++..+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 345799999999999999999999874
No 277
>PRK01184 hypothetical protein; Provisional
Probab=96.70 E-value=0.0014 Score=60.81 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=24.7
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.|+++||||+|||++++ ++..+|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 57899999999999997 788888877553
No 278
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.70 E-value=0.0034 Score=61.41 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.6
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..++|+||||+|||++++.++..+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3688999999999999999999875
No 279
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0029 Score=70.78 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=61.2
Q ss_pred CCCCccccCChHHHH-HHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cce----eeeccccchh
Q 012671 354 IKNNGDIILHPSLQR-RIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EML----HLLVHRLLPR 425 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~-~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~----~~~~~~~~se 425 (458)
.+.+|-|||.++-.+ .+.-|.+-+.| |-+|.|+||+|||-++..||...- .|. ..+...|++.
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~RR~KN---------NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~ 236 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSRRTKN---------NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS 236 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhccCCC---------CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH
Confidence 345666888876555 44433333322 889999999999999999998751 111 1122223555
Q ss_pred hhh--hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 426 SMR--YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 426 ~~~--~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
++- +|-|+...+.. -+.++++...+.|+||
T Consensus 237 LvAGakyRGeFEeRlk---~vl~ev~~~~~vILFI 268 (786)
T COG0542 237 LVAGAKYRGEFEERLK---AVLKEVEKSKNVILFI 268 (786)
T ss_pred HhccccccCcHHHHHH---HHHHHHhcCCCeEEEE
Confidence 554 78888876665 4556777777999997
No 280
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.67 E-value=0.0016 Score=58.70 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=25.4
Q ss_pred eeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 390 MLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
++|+|+||+|||++|+.|+..+ |...+.+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6789999999999999999998 65555554
No 281
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.67 E-value=0.0022 Score=62.22 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=45.5
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cceeeeccccc
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLVHRLL 423 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~~~~~ 423 (458)
+...+.+++|-+..++.+.. .+.. ...+.|-.||||+|.-||||++|.|++-.+.+ +.++.|...++
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~---NT~~-F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVR---NTEQ-FAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCcCHHHHhCchHHHHHHHH---HHHH-HHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 45567778887766664432 1111 12345667999999999999999999998884 55555654443
No 282
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.67 E-value=0.0012 Score=60.04 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=20.7
Q ss_pred eeeecCCCCChHHHHHHHHHHhCccee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
|.|+|+||||||+|++.|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 77654
No 283
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.63 E-value=0.0015 Score=65.28 Aligned_cols=27 Identities=41% Similarity=0.644 Sum_probs=23.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHh-Ccc
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS-EEM 414 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~-g~~ 414 (458)
.-++|.||||||||++|+.|+..+ +..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~ 30 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAV 30 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCE
Confidence 467889999999999999999998 443
No 284
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.61 E-value=0.0016 Score=60.81 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=25.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
..++|.||+|+|||+|++.|+..++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 478899999999999999999988766544
No 285
>PF13173 AAA_14: AAA domain
Probab=96.61 E-value=0.0043 Score=54.26 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=26.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC--cceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE--EMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g--~~~~~~~ 419 (458)
+.++++||.|||||++++.++..+. ..++.++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~ 36 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYIN 36 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeec
Confidence 4688999999999999999998876 5555555
No 286
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.58 E-value=0.0032 Score=68.36 Aligned_cols=60 Identities=22% Similarity=0.256 Sum_probs=43.6
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
...|++++|.......+...+.... ....+||++|+|||||+++|++|...+ +-+|+.++
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~in 270 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAIN 270 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEec
Confidence 4678889988775555444433221 123589999999999999999999876 45787776
No 287
>PRK13808 adenylate kinase; Provisional
Probab=96.58 E-value=0.0017 Score=66.37 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=27.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.|||+||||+|||++|..||..+|+.++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 589999999999999999999999877664
No 288
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.57 E-value=0.004 Score=63.58 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=37.9
Q ss_pred CccccCChHHHH-HHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 357 NGDIILHPSLQR-RIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 357 ~~dvi~~~~l~~-~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
|++++|...... .+..+.... ....+||++|+|||||+++|++|...+. -+|+.+.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~ 64 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEe
Confidence 455666665444 333333331 1134899999999999999999987764 5777776
No 289
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.54 E-value=0.0041 Score=67.51 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=41.4
Q ss_pred CCCCCccccCChHHHHH-HHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 353 AIKNNGDIILHPSLQRR-IQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~-l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
...+|+++++....-.. +..+.... .....||++|++||||+++|++|-..+. -+|+.++
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A-------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~in 262 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA-------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALN 262 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh-------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEec
Confidence 45688889988764443 33332221 1134799999999999999999876653 5677776
No 290
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.47 E-value=0.0072 Score=57.03 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=27.9
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh-Ccceeeeccccc
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS-EEMLHLLVHRLL 423 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~-g~~~~~~~~~~~ 423 (458)
..|.-+++.||||+|||+++..+-..+ +.+++.++..++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~ 52 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF 52 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH
Confidence 345678889999999999999999988 667777764443
No 291
>PRK08233 hypothetical protein; Provisional
Probab=96.46 E-value=0.0021 Score=59.00 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.6
Q ss_pred ceeeecCCCCChHHHHHHHHHHhC
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
-|.+.||||+|||++|..|+..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999986
No 292
>PLN02199 shikimate kinase
Probab=96.45 E-value=0.0027 Score=63.73 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=29.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.++|+|.|++|||||++++.||..+|++|+...
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 469999999999999999999999999987643
No 293
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.45 E-value=0.0042 Score=56.96 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=22.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+..+|||||+|+||+.+|.+++..+-
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 34689999999999999999999874
No 294
>PTZ00121 MAEBL; Provisional
Probab=96.45 E-value=0.44 Score=56.13 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=4.1
Q ss_pred HHHhhhhHHHH
Q 012671 148 AQGLRNEDELA 158 (458)
Q Consensus 148 ~~~a~y~D~L~ 158 (458)
..+++..-.++
T Consensus 1175 Arr~EEaRraE 1185 (2084)
T PTZ00121 1175 AKKAEAARKAE 1185 (2084)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 295
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.42 E-value=0.005 Score=68.40 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=40.6
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
..|+++++.......+...+.... ....+|||+|+|||||+++|++|...+. -+|+.++
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vn 383 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVN 383 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEE
Confidence 357778877654443333222221 1234799999999999999999998764 5787776
No 296
>PF05729 NACHT: NACHT domain
Probab=96.41 E-value=0.0024 Score=57.00 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=20.9
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-++++|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999999776
No 297
>PRK10536 hypothetical protein; Provisional
Probab=96.40 E-value=0.0048 Score=60.82 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=29.6
Q ss_pred ceeeecCCCCChHHHHHHHHHH-h-C--cceeeecccc--chhhhhhhhh
Q 012671 389 NMLFYGPPGTGKTMVAREIARK-S-E--EMLHLLVHRL--LPRSMRYLIG 432 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~-~-g--~~~~~~~~~~--~se~~~~~~g 432 (458)
.+++.||+|||||+||.+++.+ + . .+.+.+++.. ..+.+.-+.|
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCC
Confidence 8889999999999999999985 2 2 3334444433 2344444444
No 298
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.39 E-value=0.0046 Score=61.62 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=22.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+++||+||||||||++.+.+=..+..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCc
Confidence 359999999999999999876655543
No 299
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.37 E-value=0.0027 Score=58.52 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.3
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCc
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
-+++.||||+|||++++.|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999998754
No 300
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.36 E-value=0.0034 Score=61.93 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=38.3
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc-eeeec
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM-LHLLV 419 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~-~~~~~ 419 (458)
...++++...+.....+.++.... .+ ...|+|+.||+|+|||++..++...+..+ ..+++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~--v~----~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~ 160 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSA--VR----GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVT 160 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHC--HH----TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEE
T ss_pred cccHhhccCchhhHHHHHHHHhhc--cc----cceEEEEECCCccccchHHHHHhhhccccccceEE
Confidence 335666655554444444333332 11 13599999999999999999999988766 44444
No 301
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.36 E-value=0.003 Score=58.43 Aligned_cols=23 Identities=30% Similarity=0.742 Sum_probs=20.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
|++|.|+||+|||++.+.+...+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 68999999999999999999998
No 302
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.35 E-value=0.0067 Score=61.97 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=28.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
..++|.|+||||||+|++.|+..+|.+++.-.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~ 194 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEY 194 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeeh
Confidence 47899999999999999999999998885543
No 303
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.34 E-value=0.0059 Score=66.07 Aligned_cols=58 Identities=28% Similarity=0.387 Sum_probs=41.0
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
.+++++|.......+...+... .....+||++|++|||||++|++|...+. .+|+.++
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~ 245 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLN 245 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEE
Confidence 5667888776555443333322 12235999999999999999999998864 5777776
No 304
>PRK13764 ATPase; Provisional
Probab=96.31 E-value=0.0055 Score=67.29 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=26.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
..|+|++||||+|||+++.+|+.++.....+
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~ri 287 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKI 287 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCE
Confidence 3699999999999999999999988644333
No 305
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.31 E-value=0.0037 Score=58.13 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=24.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcce
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEML 415 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~ 415 (458)
..++++||||+|||+++++|+..++..+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~ 31 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKF 31 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 4678999999999999999999987643
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.29 E-value=0.012 Score=56.75 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=25.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
...++++||||||||+|+..++... |-..+.++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 4578889999999999999997553 55555544
No 307
>PRK12338 hypothetical protein; Provisional
Probab=96.29 E-value=0.0035 Score=63.68 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=26.9
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
+..+++.|+||||||++|..||..+|+..+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 457889999999999999999999998764
No 308
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.29 E-value=0.0036 Score=63.05 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=26.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
--+|+.||||||||++|..||..+|.+++
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~~v 121 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIRSV 121 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46889999999999999999999998853
No 309
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.28 E-value=0.0049 Score=56.65 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=23.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
...++|.|+||+|||++++.|+..+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999873
No 310
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.27 E-value=0.0038 Score=58.76 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=24.1
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+..-++|.||||+|||+|++.|+..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999999875
No 311
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.27 E-value=0.0049 Score=64.58 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=39.5
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.+++|.-+.+.+.++|..- -+++|+.||||.|||+||.+||..+...-.+
T Consensus 244 ~~ledY~L~dkl~eRL~er-------------aeGILIAG~PGaGKsTFaqAlAefy~~~Gki 293 (604)
T COG1855 244 LSLEDYGLSDKLKERLEER-------------AEGILIAGAPGAGKSTFAQALAEFYASQGKI 293 (604)
T ss_pred echhhcCCCHHHHHHHHhh-------------hcceEEecCCCCChhHHHHHHHHHHHhcCcE
Confidence 4677788888888887631 2599999999999999999999987554443
No 312
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.25 E-value=0.0067 Score=66.21 Aligned_cols=32 Identities=25% Similarity=0.246 Sum_probs=29.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
..++|.|+||||||++++.||..+|++|+.+.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D 38 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADAD 38 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 38999999999999999999999999998754
No 313
>PRK08356 hypothetical protein; Provisional
Probab=96.24 E-value=0.0042 Score=58.43 Aligned_cols=30 Identities=20% Similarity=0.018 Sum_probs=24.0
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..++|+||||+|||++|+.|. ..|+..+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~ 35 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFCRVSC 35 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeC
Confidence 357899999999999999996 467764443
No 314
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.24 E-value=0.0082 Score=61.42 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=27.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
.+|||+|+|||||+++|++|...+. .+|+.++
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vn 57 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLN 57 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEe
Confidence 5899999999999999999987764 5787776
No 315
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0031 Score=59.95 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=22.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHhC
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
-++|.|+||+|||++|+.|++.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 478999999999999999999884
No 316
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.21 E-value=0.0041 Score=58.12 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=24.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
..++++.||+|+|||++.++|+.....
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 468999999999999999999988753
No 317
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=96.19 E-value=0.0081 Score=58.45 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=34.5
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+|.-|...+....+..+... ..+..++||+|||||...+.||..+|..++...
T Consensus 12 lv~Tplt~r~~~~l~~al~~-------~~~~~~~GpagtGKtetik~La~~lG~~~~vfn 64 (231)
T PF12774_consen 12 LVITPLTDRCFLTLTQALSL-------NLGGALSGPAGTGKTETIKDLARALGRFVVVFN 64 (231)
T ss_dssp ----HHHHHHHHHHHHHHCT-------TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEE
T ss_pred ceechHHHHHHHHHHHHhcc-------CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEec
Confidence 44455555555444444321 235678999999999999999999999988876
No 318
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.0059 Score=55.55 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=30.9
Q ss_pred cCCCc-ceeeecCCCCChHHHHHHHHHHhCcceeeecc
Q 012671 384 QAPFR-NMLFYGPPGTGKTMVAREIARKSEEMLHLLVH 420 (458)
Q Consensus 384 ~~p~r-nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~ 420 (458)
..|++ -+++.|++|||||+++++|+.++|++|+.-..
T Consensus 8 ~~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd 45 (191)
T KOG3354|consen 8 MGPFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDD 45 (191)
T ss_pred cCCCceeEEEEecCCCChhhHHHHHHHHhCCccccccc
Confidence 35666 56678999999999999999999999976443
No 319
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.15 E-value=0.016 Score=57.61 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=40.0
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+|+-+++...+..+.+.. ..|..|+||.|++||||+++++..|.-++++++.+.
T Consensus 10 lVlf~~ai~hi~ri~RvL------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~ 63 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVL------SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIE 63 (268)
T ss_dssp ----HHHHHHHHHHHHHH------CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TT
T ss_pred eeeHHHHHHHHHHHHHHH------cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEE
Confidence 677777777766665554 345569999999999999999999998999988765
No 320
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.13 E-value=0.0064 Score=60.81 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=26.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh----C-cceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS----E-EMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~----g-~~~~~~~ 419 (458)
++.++|+||+|+|||+++..||..+ | ..+..++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 4578899999999999999999876 3 4555554
No 321
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=1.1 Score=50.03 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 012671 143 KAQARAQGLRNEDELARKR 161 (458)
Q Consensus 143 ~~~~~~~~a~y~D~L~rkr 161 (458)
|.+.-+++.+.+.+|+|+|
T Consensus 363 qEqErk~qlElekqLerQR 381 (1118)
T KOG1029|consen 363 QEQERKAQLELEKQLERQR 381 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444555556666544
No 322
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.11 E-value=0.0046 Score=52.51 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
++++++||||+|||+++..++..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 4899999999999998888887764
No 323
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.10 E-value=0.0053 Score=62.63 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=23.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..|+|+.||+|+|||++.++|....
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999999876
No 324
>PF13479 AAA_24: AAA domain
Probab=96.10 E-value=0.0018 Score=61.94 Aligned_cols=19 Identities=53% Similarity=1.127 Sum_probs=18.1
Q ss_pred ceeeecCCCCChHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREI 407 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaL 407 (458)
++|+|||||+|||++|..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 7999999999999999988
No 325
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.07 E-value=0.015 Score=60.20 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=32.9
Q ss_pred hcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhh
Q 012671 383 HQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIG 432 (458)
Q Consensus 383 ~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~g 432 (458)
...+++|+.||||+|+|||||.-..-..+.. -.-.+..+.++|..+..
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~--~~k~R~HFh~Fm~~vh~ 105 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI--KRKRRVHFHEFMLDVHS 105 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCc--cccccccccHHHHHHHH
Confidence 3457899999999999999999888776643 22233344555554333
No 326
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.07 E-value=0.0043 Score=56.87 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.8
Q ss_pred ecCCCCChHHHHHHHHHHhCcceee
Q 012671 393 YGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 393 ~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.||||||||+++++|+..+|..++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~ 25 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLD 25 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEe
Confidence 4999999999999999999865544
No 327
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.01 Score=57.51 Aligned_cols=30 Identities=40% Similarity=0.598 Sum_probs=25.1
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
..+-|.|+.||||||||++.+-||+.+...
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 335689999999999999999999887443
No 328
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.06 E-value=0.013 Score=53.67 Aligned_cols=31 Identities=32% Similarity=0.442 Sum_probs=25.5
Q ss_pred ceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
-|.|.|.||+|||++|++|...+ |...+.+.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 57799999999999999999988 45566655
No 329
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.05 E-value=0.014 Score=62.11 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=27.3
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.+..-+|++||||+|||+|+..++... |..++.++
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344577899999999999999998765 55555565
No 330
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.05 E-value=0.0089 Score=58.04 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=26.2
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHH---hCcceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARK---SEEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~---~g~~~~~~~ 419 (458)
.+...+|++||||||||.||..++.. .|...+.++
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34568889999999999999876554 366666655
No 331
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.02 E-value=0.012 Score=56.72 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 369 RIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 369 ~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
....+.....+...+..++.-+.|.||+|+|||+|++.|+..+..
T Consensus 15 ~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 15 VHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 344444444443334344556778899999999999999988753
No 332
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.02 E-value=0.0041 Score=57.19 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=21.4
Q ss_pred ceeeecCCCCChHHHHHHHHHHhC
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
-++|.||||+|||++++.|+....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCc
Confidence 478999999999999999998754
No 333
>PLN02165 adenylate isopentenyltransferase
Probab=96.01 E-value=0.006 Score=62.28 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=26.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
...++|.||+|+|||.||..||..++..++.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIs 73 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIIN 73 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceec
Confidence 3478899999999999999999998865444
No 334
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.0066 Score=63.09 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
...++|+||||+|||+++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999764
No 335
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.99 E-value=0.012 Score=59.18 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=38.8
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.|+.+.....+..+.......+...- .|+|++|++|.|||++++..+...
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rm--p~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRM--PNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCC--CceEEecCCCCcHHHHHHHHHHHC
Confidence 67788888777776666555444433 399999999999999999999765
No 336
>PRK09862 putative ATP-dependent protease; Provisional
Probab=95.96 E-value=0.0055 Score=66.08 Aligned_cols=47 Identities=36% Similarity=0.487 Sum_probs=34.8
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+|.++.++..+.+.+... .....+++|+||||||||++++.|+..+
T Consensus 188 ~d~~~v~Gq~~~~~al~la----------a~~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT----------AAGGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred cCeEEEECcHHHHhhhhee----------ccCCcEEEEECCCCCcHHHHHHHHhccC
Confidence 4788888877655544311 1234589999999999999999999765
No 337
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.95 E-value=0.014 Score=52.83 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 365 SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 365 ~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.-.+.+..+....... ...+++||.+|+|+|||.++-.++..+...++.++
T Consensus 7 ~Q~~ai~~i~~~~~~~----~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~ 57 (184)
T PF04851_consen 7 YQQEAIARIINSLENK----KEERRVLLNAPTGSGKTIIALALILELARKVLIVA 57 (184)
T ss_dssp HHHHHHHHHHHHHHTT----SGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEE
T ss_pred HHHHHHHHHHHHHHhc----CCCCCEEEEECCCCCcChhhhhhhhccccceeEec
Confidence 3344555554443322 22469999999999999999987777766666665
No 338
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.95 E-value=0.0098 Score=56.99 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=25.3
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh----Ccceeeecc
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS----EEMLHLLVH 420 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~----g~~~~~~~~ 420 (458)
+...+|++||||||||.|+..++... |...+.++.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 34578899999999999998876443 777666663
No 339
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.94 E-value=0.0096 Score=54.98 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=24.9
Q ss_pred eeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 390 MLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
|.|.||+|+|||++++.|+..+ |..+..+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5788999999999999999998 65655443
No 340
>PRK13975 thymidylate kinase; Provisional
Probab=95.94 E-value=0.0081 Score=56.00 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.1
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcce
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEML 415 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~ 415 (458)
-|.|.||+|+|||++++.|+..++..+
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 578899999999999999999998543
No 341
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.91 E-value=0.02 Score=53.02 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=24.7
Q ss_pred cCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 384 QAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 384 ~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..++.-++|.|+||+|||++++.|+..+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34556788999999999999999999873
No 342
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.90 E-value=0.0058 Score=57.39 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.3
Q ss_pred eeeecCCCCChHHHHHHHHHHhC
Q 012671 390 MLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g 412 (458)
|-+.||||+|||+||+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999997
No 343
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.90 E-value=0.0085 Score=56.77 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=22.9
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+.-|.+.||||||||+|++.|+..++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34677899999999999999999983
No 344
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.90 E-value=0.011 Score=58.24 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=27.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHR 421 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~ 421 (458)
.+.+|++||||||||.|+...+... |.+.+.++..
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 4578899999999999888777554 6677777633
No 345
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.89 E-value=0.0068 Score=58.34 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=25.4
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.+.+.||+|||||++++.|+..+|+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 46788999999999999999999977653
No 346
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=95.88 E-value=0.012 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHHHhCcceeeec
Q 012671 396 PGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 396 PGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
||||||++++.||..+|.+|+.+.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D 24 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLD 24 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccC
Confidence 799999999999999999998864
No 347
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.88 E-value=0.0067 Score=63.70 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=27.5
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.++|.+.|++|||||+|+..|+..+|..++.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 4689999999999999999999999887543
No 348
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.88 E-value=0.012 Score=55.61 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=26.5
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.+.++||||+|||++++.|+..+|.+++..
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~ 32 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDA 32 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeC
Confidence 578999999999999999999888887753
No 349
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.87 E-value=0.014 Score=61.04 Aligned_cols=66 Identities=21% Similarity=0.159 Sum_probs=43.9
Q ss_pred CCCCCccccCChHH-HHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh----Ccceeeeccccchhhh
Q 012671 353 AIKNNGDIILHPSL-QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----EEMLHLLVHRLLPRSM 427 (458)
Q Consensus 353 ~~~~~~dvi~~~~l-~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~----g~~~~~~~~~~~se~~ 427 (458)
....++++||...- ++.+.++.. ......+||++|++||||+++|..|...+ +-+|+.++ |..+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~-------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~N---Ca~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA-------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFN---CAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh-------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEE---HHHhC
Confidence 34456777776654 334444433 12223599999999999999999998554 45777777 65554
Q ss_pred h
Q 012671 428 R 428 (458)
Q Consensus 428 ~ 428 (458)
+
T Consensus 143 e 143 (403)
T COG1221 143 E 143 (403)
T ss_pred c
Confidence 4
No 350
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.85 E-value=0.0062 Score=62.71 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=28.2
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
...|+|+.||+|+|||++.++|......+.-.++
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivt 194 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLIT 194 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEE
Confidence 3569999999999999999999998765544444
No 351
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.83 E-value=0.0083 Score=55.88 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.9
Q ss_pred eeeecCCCCChHHHHHHHHHHhC
Q 012671 390 MLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g 412 (458)
|.+.|+||+|||+||..|+..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999973
No 352
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.82 E-value=0.0074 Score=53.71 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=21.0
Q ss_pred eeeecCCCCChHHHHHHHHHHhCc
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
++|.||+|+|||++++.|+.....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 578999999999999999988543
No 353
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=95.82 E-value=0.016 Score=62.18 Aligned_cols=62 Identities=29% Similarity=0.277 Sum_probs=45.1
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
...+.|+++++....-.++...+. ..-....+||++|-+||||.+||++|-+.+ +-+|+.++
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~ak------r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiN 303 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAK------RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAIN 303 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHH------hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEe
Confidence 456789999987764443333322 222334699999999999999999999888 46788777
No 354
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.81 E-value=0.0081 Score=55.74 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=24.5
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
|.++|+||+|||++++.|+. +|.+++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec
Confidence 67899999999999999999 88777653
No 355
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.80 E-value=0.0073 Score=65.04 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=28.4
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+++|.|+||||||++++.||..+|.+|+.+.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D 32 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMD 32 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECc
Confidence 6899999999999999999999999998654
No 356
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.80 E-value=0.023 Score=53.58 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.0
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..+.-+.|.|+||+|||++++.|+..+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455788999999999999999999873
No 357
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.79 E-value=0.0079 Score=55.68 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=25.5
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.+|+.||||+|||.+|..++..++.+++.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~i 32 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYI 32 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeC
Confidence 588999999999999999999988654443
No 358
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.79 E-value=0.0098 Score=56.60 Aligned_cols=24 Identities=46% Similarity=0.764 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.-++++||||||||+||..+|...
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457799999999999999999775
No 359
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.78 E-value=0.0073 Score=58.41 Aligned_cols=30 Identities=30% Similarity=0.318 Sum_probs=26.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
..+.+.||||||||++++.||..+|++++.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 367789999999999999999999988764
No 360
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.78 E-value=0.0082 Score=56.56 Aligned_cols=29 Identities=21% Similarity=0.175 Sum_probs=23.5
Q ss_pred eeeecCCCCChHHHHHHHHHHh-Ccceeee
Q 012671 390 MLFYGPPGTGKTMVAREIARKS-EEMLHLL 418 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~-g~~~~~~ 418 (458)
|.+.|+||+|||++|+.|+..+ +..++.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~ 31 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQ 31 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEcc
Confidence 4678999999999999999998 4444443
No 361
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.0065 Score=55.68 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=23.5
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
.+++.||||+|||+++..|+..+.-.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 78899999999999999999888655
No 362
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.77 E-value=0.0072 Score=57.31 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.1
Q ss_pred ceeeecCCCCChHHHHHHHHHHhC
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
-+.+.||||+|||+|+++|+..++
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 455789999999999999998875
No 363
>smart00350 MCM minichromosome maintenance proteins.
Probab=95.76 E-value=0.009 Score=64.69 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=22.6
Q ss_pred ceeeecCCCCChHHHHHHHHHHhC
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
||||+|+||||||++|+.++..+.
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~ 261 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAP 261 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcC
Confidence 899999999999999999998774
No 364
>PTZ00202 tuzin; Provisional
Probab=95.75 E-value=0.053 Score=57.47 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=41.2
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
...+++|.......|..+.... ....++-++|.||+|||||++++.+...++...+.++
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~-----d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vN 318 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRL-----DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVD 318 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhcc-----CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEEC
Confidence 3445777776666666554421 1223356779999999999999999999886655554
No 365
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=95.75 E-value=0.012 Score=60.95 Aligned_cols=34 Identities=29% Similarity=0.562 Sum_probs=27.2
Q ss_pred cCCCcc-eeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 384 QAPFRN-MLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 384 ~~p~rn-vLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
+.|.+| ++|||||+|||++++-.|-+.++-.++.
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViS 292 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVIS 292 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEE
Confidence 466665 6689999999999999999998766544
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.75 E-value=0.01 Score=54.38 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=23.7
Q ss_pred eeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 390 MLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
++|.||||+|||+++..++..+ |..+..+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6789999999999999999876 44444443
No 367
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.75 E-value=0.0092 Score=55.99 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.2
Q ss_pred eeeecCCCCChHHHHHHHHHHh
Q 012671 390 MLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~ 411 (458)
|.+.||||+|||+|+++|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999987
No 368
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.70 E-value=0.0084 Score=56.29 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=22.7
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+++-++|.||||+|||+|++.|....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678899999999999999998765
No 369
>PRK05973 replicative DNA helicase; Provisional
Probab=95.68 E-value=0.013 Score=57.20 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=26.0
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.|..-+|+.|+||+|||+|+-.++... |.+.+.++
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 334467889999999999988877654 66655554
No 370
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.67 E-value=0.015 Score=57.96 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=24.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+.|++++||||+|||+|.+.|+..+..
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 469999999999999999999988753
No 371
>PRK06761 hypothetical protein; Provisional
Probab=95.63 E-value=0.01 Score=59.49 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.2
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
-++|.||||+|||++++.|+..+...
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 47889999999999999999998653
No 372
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.61 E-value=0.0077 Score=66.93 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=24.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
..+|++||||||||+++..+..++ |..++..+
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 378899999999999888877664 55554443
No 373
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.03 Score=52.15 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=35.0
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhhhhhh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMRYLIG 432 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~~~~g 432 (458)
..+.-+.|.|.||.|||++|.+|...+ |...+.+.+.+.-.-+++-+|
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg 71 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG 71 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC
Confidence 334577899999999999999999887 667777765544444444444
No 374
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.59 E-value=0.0088 Score=56.67 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=21.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
|+-++|.||+|+|||+.+-.||..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 35688999999999998888887663
No 375
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.58 E-value=0.011 Score=59.07 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=45.2
Q ss_pred ccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc--ceeeeccccchhhhh
Q 012671 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE--MLHLLVHRLLPRSMR 428 (458)
Q Consensus 358 ~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~--~~~~~~~~~~se~~~ 428 (458)
+..||+-...+...-+...... +....+.+|+.||||||||-+|-.+++.+|. +|..++ +|++.+
T Consensus 40 ~GmVGQ~~AR~Aagvi~kmi~e---gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~---gSEI~S 106 (454)
T KOG2680|consen 40 EGMVGQVKARKAAGVILKMIRE---GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSIS---GSEIYS 106 (454)
T ss_pred ccchhhHHHHHHhHHHHHHHHc---CcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeee---cceeee
Confidence 3456666665555444444333 2334679999999999999999999999985 677777 555443
No 376
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.012 Score=60.19 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=24.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+..+||+||+|+|||.+|..+|..+..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 447999999999999999999998854
No 377
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.58 E-value=0.013 Score=56.23 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=25.0
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.+...++++||||||||+|+..++... |...+.++
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 344588899999999999998876432 44444444
No 378
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.56 E-value=0.014 Score=57.43 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=22.7
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHH
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
...+-|.++|++|+|||.||..+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 34567889999999999999999977
No 379
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.55 E-value=0.015 Score=59.24 Aligned_cols=25 Identities=36% Similarity=0.596 Sum_probs=22.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..|+|+.||||+|||+++.+|+...
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4699999999999999999999874
No 380
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.54 E-value=0.0099 Score=66.98 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=26.1
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.+.+-||||||||++|+.||..+|+.|+.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~ 31 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLD 31 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 57789999999999999999999987764
No 381
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.54 E-value=0.011 Score=62.69 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=27.5
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
.+.-++|+|+||||||++|..||..+|+..+
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~i 284 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRI 284 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 4678899999999999999999999998643
No 382
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.017 Score=56.58 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=42.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhh--hhhhhhhhhHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIG--RRNQRKACCFLLTRLM 448 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~g--e~~~~~~~i~~lf~~a 448 (458)
+.-+|+-|+||+|||++|.-||..+|.+-++-+ ..+-++++++++ ...-+....|..++..
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rLgI~~visT-D~IREvlR~ii~~~l~PtLh~Ssy~Awkal 151 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRLGIRSVIST-DSIREVLRKIISPELLPTLHTSSYDAWKAL 151 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHcCCceeecc-hHHHHHHHHhCCHHhcchhhHhHHHHHHHh
Confidence 457788899999999999999999998875533 334667777776 2233334455555544
No 383
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.51 E-value=0.011 Score=51.85 Aligned_cols=29 Identities=31% Similarity=0.273 Sum_probs=24.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcce
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEML 415 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~ 415 (458)
..-|+|+|+=|+|||+|++.++..+|.+-
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~ 43 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDE 43 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 35688999999999999999999998864
No 384
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.51 E-value=0.025 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.0
Q ss_pred cceeeecCCCCChHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~ 409 (458)
+-++|.||+|+|||+|.+.|+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5778999999999999999994
No 385
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.50 E-value=0.018 Score=55.90 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=23.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
...++++||||||||++|..++... |...+.++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4578899999999999986655433 44444444
No 386
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.49 E-value=0.01 Score=56.06 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCc
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
-+++.||+|+|||++..+|...+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4788999999999999999988753
No 387
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.49 E-value=0.012 Score=63.67 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=25.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
..+.+.||||||||++|+.||..+|+.++
T Consensus 285 ~ii~i~G~sgsGKst~a~~la~~l~~~~~ 313 (512)
T PRK13477 285 PIIAIDGPAGAGKSTVTRAVAKKLGLLYL 313 (512)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEe
Confidence 47788999999999999999999986654
No 388
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.47 E-value=0.014 Score=55.78 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=24.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.-++++||||+|||.+|..++... |...+.++
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 357899999999999999999754 55555444
No 389
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.47 E-value=0.021 Score=56.86 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=21.9
Q ss_pred ceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
-|+|+|.||+|||++|+.|...+ +..+.+++
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 47899999999999999999985 45665555
No 390
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.46 E-value=0.013 Score=60.02 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=27.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
..|+|+.||+|+|||++..+|......+..+++
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~t 192 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLIT 192 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEE
Confidence 469999999999999999999998876554444
No 391
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.46 E-value=0.034 Score=57.93 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=26.3
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.+..-+|++||||+|||+|+..++... |..++.++
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344567899999999999999998765 33455555
No 392
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.46 E-value=0.012 Score=59.59 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=24.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
.-+++.||+|+|||.+|..||..++..++
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~ii 33 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEII 33 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEE
Confidence 35778999999999999999999876543
No 393
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.45 E-value=0.015 Score=54.68 Aligned_cols=26 Identities=38% Similarity=0.802 Sum_probs=23.4
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+...+++|||.|+|||+|++.+...+
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 34689999999999999999999988
No 394
>PRK07667 uridine kinase; Provisional
Probab=95.45 E-value=0.01 Score=55.89 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=21.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.-|.+.|+||+|||++|..|+..++
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566899999999999999999874
No 395
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.43 E-value=0.023 Score=53.01 Aligned_cols=29 Identities=28% Similarity=0.203 Sum_probs=25.1
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
|.++|++|||||++++.|+...|.+++..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~ 30 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDA 30 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 57899999999999999999876777654
No 396
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.42 E-value=0.011 Score=56.29 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
++-++|+||||+|||+|+..|...
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 346778999999999999999753
No 397
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.40 E-value=0.012 Score=58.08 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=24.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
..-+|++||||||||.||..++.+. |-+.+.++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3467789999999999999877643 55555554
No 398
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.37 E-value=0.016 Score=54.73 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=23.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
+-+++.||||||||++.+.+...+ |..++.+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 357788999999999999887665 44555543
No 399
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.36 E-value=0.047 Score=55.04 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.5
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+...+.|.||||+|||+|+..|+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445688899999999999999999876
No 400
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.36 E-value=0.0092 Score=61.41 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=19.6
Q ss_pred eeeecCCCCChHHHHHHHHHHh
Q 012671 390 MLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+-|.||+|||||++.++||..-
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5589999999999999999754
No 401
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.35 E-value=0.023 Score=54.39 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=25.6
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
+...++++||||+|||.+|..++... |...+.++
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34578889999999999999888553 55554544
No 402
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.33 E-value=0.013 Score=62.31 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++..++|+||||+|||+++..||..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999877
No 403
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.33 E-value=0.019 Score=53.28 Aligned_cols=29 Identities=24% Similarity=0.589 Sum_probs=24.5
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcce
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEML 415 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~ 415 (458)
.+-++|.||+|+|||+|++.|.......|
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 36789999999999999999998875433
No 404
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.32 E-value=0.017 Score=59.06 Aligned_cols=26 Identities=38% Similarity=0.362 Sum_probs=23.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+..+||+||+|+|||.+|..+|..+.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 34799999999999999999999874
No 405
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=95.26 E-value=0.033 Score=59.34 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=42.8
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
.+.++||....-..+...+.....+ ..+||++|.+||||.++|++|...+. -+|+.++
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavN 199 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVN 199 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeee
Confidence 4556777776666555554443221 24899999999999999999999984 5888877
No 406
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.25 E-value=0.012 Score=60.39 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=21.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.-+.|.||+|||||++.+.||.--.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999997553
No 407
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.25 E-value=0.053 Score=58.39 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=26.8
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.+...+|+.||||||||+|+...+... |-..+.++
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344578899999999999998888755 55555555
No 408
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.25 E-value=0.012 Score=56.29 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=19.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+++.||.|||||+||.+.|.++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 78889999999999999999766
No 409
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.21 E-value=0.024 Score=58.66 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
...++++||+|+|||++.++|..++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999887
No 410
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.21 E-value=0.019 Score=57.95 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..|+|+.||+|+|||+++++|.....
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 46999999999999999999998863
No 411
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=95.20 E-value=0.014 Score=64.35 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=27.9
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc--ceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE--MLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~--~~~~~~ 419 (458)
..+|||.|+||||||++|++|+..++. +|+.+.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~ 50 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELP 50 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecC
Confidence 459999999999999999999998864 466555
No 412
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.17 E-value=0.029 Score=54.05 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=26.9
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh----Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS----EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~----g~~~~~~~ 419 (458)
.+..-+++.||||+|||+|+..++... |.+++.++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 344578889999999999998887665 66665555
No 413
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.13 E-value=0.018 Score=55.18 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.++||||||||.||..++...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHe
Confidence 3467799999999999999998653
No 414
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.11 E-value=0.02 Score=57.56 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=24.6
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+++.||+|+|||.||..|+..++..++.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~ 30 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISV 30 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEe
Confidence 67899999999999999999987655443
No 415
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.10 E-value=0.025 Score=56.39 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+++-++|+||||+|||+++..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 345678899999999999999999877
No 416
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.09 E-value=0.015 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.731 Sum_probs=21.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+.++|.||+|||||+|+.+|-..-
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 468999999999999999998643
No 417
>PRK04328 hypothetical protein; Provisional
Probab=95.08 E-value=0.031 Score=54.84 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCcceeeecCCCCChHHHHHHHHHH---hCcceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARK---SEEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~---~g~~~~~~~ 419 (458)
+...+|++||||||||.||..++.. .|.+.+.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3457888999999999998876644 255555554
No 418
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.07 E-value=0.02 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=22.0
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+-++|.||||+||++++..|....
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 568899999999999999999885
No 419
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.07 E-value=0.033 Score=57.24 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=38.5
Q ss_pred cccCChHHHHHHHHHHHHHHhhhhhcCC-CcceeeecCCCCChHHHHHHHHHHhC-cceeeecc
Q 012671 359 DIILHPSLQRRIQHLAKATANTKIHQAP-FRNMLFYGPPGTGKTMVAREIARKSE-EMLHLLVH 420 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~~~~~~~~~p-~rnvLl~GPPGTGKT~lAkaLA~~~g-~~~~~~~~ 420 (458)
++.|. .+.|..|+........+... .+-++|+||+|+|||+|+..|.+-+- .++|.+..
T Consensus 62 ~~~G~---~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~ 122 (358)
T PF08298_consen 62 EFYGM---EETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKG 122 (358)
T ss_pred cccCc---HHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecC
Confidence 45543 44555556554444443333 34677899999999999999998773 45555543
No 420
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.04 E-value=0.019 Score=53.50 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.2
Q ss_pred eeeecCCCCChHHHHHHHHHHhCccee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
|.+.|++|||||++++.|+..+|..++
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 578999999999999999998876443
No 421
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.03 E-value=0.028 Score=60.54 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=26.9
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHH----hCcceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARK----SEEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~----~g~~~~~~~ 419 (458)
.+.+.+|++||||||||+||...+.+ .|-+.+.++
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34568999999999999999988543 256666665
No 422
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=95.01 E-value=0.022 Score=53.65 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=24.9
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.|.++||+|+|||++++.|+. +|.+++.
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~ 31 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVID 31 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 588999999999999999998 8877655
No 423
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.00 E-value=0.017 Score=53.84 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCc
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
..|.|.||||+|||++++.|+.+++.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35778999999999999999999843
No 424
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.99 E-value=0.028 Score=60.59 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=33.7
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
...|+++.+.++....+..++.. +..-+|++||+|+|||++..++-..+.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34666666666655555543322 222478999999999999998777664
No 425
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.97 E-value=0.018 Score=49.28 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.9
Q ss_pred CcceeeecCCCCChHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIA 408 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA 408 (458)
...++|.||+|+|||+|++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3578999999999999999987
No 426
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.96 E-value=0.013 Score=51.28 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.0
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+...+.+.||+|+|||+|.++|+....
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred cCCCEEEEEccCCCccccceeeeccccc
Confidence 3456888999999999999999998764
No 427
>PLN02840 tRNA dimethylallyltransferase
Probab=94.94 E-value=0.021 Score=60.10 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=25.7
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
-+++.||+|+|||.|+..|+..++..++.+
T Consensus 23 vi~I~GptgsGKTtla~~La~~~~~~iis~ 52 (421)
T PLN02840 23 VIVISGPTGAGKSRLALELAKRLNGEIISA 52 (421)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCeEec
Confidence 578899999999999999999998665443
No 428
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.92 E-value=0.032 Score=55.36 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=31.9
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.|+++...++....+..+.. .+...+|+.||+|+|||++..++...+.
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~---------~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLE---------KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHh---------cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 45555555554444433321 1223689999999999999999987764
No 429
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.92 E-value=0.02 Score=56.36 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.5
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
....++++||||||||+|++.|++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3458999999999999999999988754
No 430
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.88 E-value=0.021 Score=57.85 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=25.0
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
...++++.||+|+|||++.++|...+..+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~ 171 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKD 171 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCcc
Confidence 35699999999999999999999887543
No 431
>PRK05439 pantothenate kinase; Provisional
Probab=94.82 E-value=0.05 Score=55.26 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=21.6
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
--|.+.||||+|||++|+.|+..++
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566899999999999999998764
No 432
>PRK10646 ADP-binding protein; Provisional
Probab=94.80 E-value=0.056 Score=49.28 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=25.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
..-|+|.|+=|+|||+|+++|++.+|.+
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3467899999999999999999999974
No 433
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.79 E-value=0.067 Score=58.79 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+..|+|+|+||||||++|+.|+..++.
T Consensus 392 g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 392 GFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 347889999999999999999999986
No 434
>PTZ00301 uridine kinase; Provisional
Probab=94.78 E-value=0.032 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.4
Q ss_pred eeeecCCCCChHHHHHHHHHHh
Q 012671 390 MLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~ 411 (458)
|.+.||||+|||+||..|+..+
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 5578999999999999998765
No 435
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.78 E-value=0.023 Score=52.74 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=24.2
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+...+++.||+||||++|-|.||.....
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCC
Confidence 34558899999999999999999986543
No 436
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.76 E-value=0.03 Score=57.55 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..++|+.||+|+|||++.++|...+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35889999999999999999998775
No 437
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.76 E-value=0.024 Score=57.77 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.0
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+-+++|||||||||+||..++...
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467799999999999988776554
No 438
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.75 E-value=0.024 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.1
Q ss_pred eeeecCCCCChHHHHHHHHHHhCc
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
|++.|++|+|||+|.+.|+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 788999999999999999976544
No 439
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.73 E-value=0.035 Score=57.17 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.6
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+..+||+||+|+|||.+|..+|..+..
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3458999999999999999999988855
No 440
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.71 E-value=0.025 Score=55.25 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=21.5
Q ss_pred ecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 393 YGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 393 ~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
.||||+|||++++++..++. .+++.++
T Consensus 2 iGpaGSGKTT~~~~~~~~~~~~~~~~~~vN 31 (238)
T PF03029_consen 2 IGPAGSGKTTFCKGLSEWLESNGRDVYIVN 31 (238)
T ss_dssp EESTTSSHHHHHHHHHHHHTTT-S-EEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhccCCceEEE
Confidence 69999999999999999884 4455554
No 441
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.70 E-value=0.043 Score=53.92 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=27.0
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh----Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS----EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~----g~~~~~~~ 419 (458)
.+...+++.||||+|||+++..++... |..++.++
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 344578899999999999999887764 66665555
No 442
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=3.5 Score=46.20 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012671 101 KQEQTRLAELDVEKVHYEAIQ 121 (458)
Q Consensus 101 ~~e~t~q~e~~~~~~e~~~~~ 121 (458)
.||..|+.-|+.-.+|++...
T Consensus 313 TFEDKrkeNy~kGqaELerRR 333 (1118)
T KOG1029|consen 313 TFEDKRKENYEKGQAELERRR 333 (1118)
T ss_pred chhhhhHHhHhhhhHHHHHHH
Confidence 355555555555555554443
No 443
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=94.67 E-value=0.034 Score=51.81 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=27.1
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
-|+|.|||-+|||++|++|...+..+|+++.
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~ 33 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLS 33 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEe
Confidence 5789999999999999999999999998887
No 444
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.67 E-value=0.065 Score=56.53 Aligned_cols=24 Identities=38% Similarity=0.678 Sum_probs=21.0
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.-++|.||+|+|||+++..||...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999754
No 445
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.67 E-value=0.045 Score=57.36 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++.++|.||+|+|||+++..||..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 4688999999999999999999876
No 446
>PRK04132 replication factor C small subunit; Provisional
Probab=94.66 E-value=0.02 Score=65.28 Aligned_cols=42 Identities=31% Similarity=0.646 Sum_probs=32.4
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHH
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTM 402 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~ 402 (458)
.+..|+|++|++.+...+...+.. ....++||+||||+||++
T Consensus 14 RP~~f~dIiGqe~i~~~Lk~~i~~--------~~i~h~l~~g~~g~~~cl 55 (846)
T PRK04132 14 RPQRLDDIVGQEHIVKRLKHYVKT--------GSMPHLLFAGPPGVGKCL 55 (846)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc--------CCCCeEEEECCCCCCccc
Confidence 345899999999999877765543 233478999999999964
No 447
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.65 E-value=0.024 Score=54.58 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.2
Q ss_pred eeeecCCCCChHHHHHHHHHHhC
Q 012671 390 MLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+-+.||||+|||+||+.|+..+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 34779999999999999999873
No 448
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=94.63 E-value=0.021 Score=52.61 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=23.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcce
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEML 415 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~ 415 (458)
.-.+|+||.|||||+++.+|...++-..
T Consensus 20 g~~vi~G~Ng~GKStil~ai~~~L~~~~ 47 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILEAIRYALGGQS 47 (202)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHSS-
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 3567899999999999999998886543
No 449
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.59 E-value=0.026 Score=59.73 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+.++|.||+|+|||+++..||..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999998888654
No 450
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.59 E-value=0.026 Score=59.10 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..++|+||+|+|||+++..||..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999765
No 451
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=94.58 E-value=0.064 Score=57.15 Aligned_cols=66 Identities=26% Similarity=0.276 Sum_probs=46.4
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cceeeeccccchhhhh
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLVHRLLPRSMR 428 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~~~~~se~~~ 428 (458)
...+.++||....-..+.+.+..... ...+||++|-+||||..+|++|-..++ -+|+.++ ++.+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~N---CAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAK------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLN---CAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhc------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeee---ccccch
Confidence 55677789888766644444333211 124899999999999999999999884 6787777 544433
No 452
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.58 E-value=0.036 Score=51.31 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=24.1
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+|+.||||+|||.+|..++...|.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~ 30 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYI 30 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 57899999999999999998877555443
No 453
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.57 E-value=0.059 Score=57.34 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=38.1
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
.+.++++.......+...+... ......+|++|++|||||++|++|...+. .+|+.++
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~ 196 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALN 196 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeee
Confidence 3455666654444333222211 12234899999999999999999999874 5677776
No 454
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.57 E-value=0.035 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.-+.++||||||||.||..++...
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHh
Confidence 356799999999999999998764
No 455
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.56 E-value=0.025 Score=56.11 Aligned_cols=48 Identities=27% Similarity=0.523 Sum_probs=32.7
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.|+.++.+.+....+..+.. ..-+.|+|||||+|+||-+.+.||-+++
T Consensus 11 sl~~l~~~~e~~~~Lksl~~--------~~d~PHll~yGPSGaGKKTrimclL~el 58 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSS--------TGDFPHLLVYGPSGAGKKTRIMCLLREL 58 (351)
T ss_pred hhhhcccHHHHHHHHHHhcc--------cCCCCeEEEECCCCCCchhhHHHHHHHH
Confidence 45556666655554443322 1223499999999999999999888887
No 456
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.55 E-value=0.045 Score=43.82 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.2
Q ss_pred eeeecCCCCChHHHHHHHHHHh
Q 012671 390 MLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++++|.+|+|||+++..|+..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999987
No 457
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.53 E-value=0.029 Score=57.18 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.8
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++.-++|.||||+|||+++..||..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34578899999999999999999877
No 458
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=94.51 E-value=0.031 Score=63.97 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=28.5
Q ss_pred cCCCc--ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 384 QAPFR--NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 384 ~~p~r--nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
+.|.. .|.+-||||||||++|+.||..+|+.|+.
T Consensus 29 ~~~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~ 64 (863)
T PRK12269 29 CRPMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLN 64 (863)
T ss_pred ecccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 44544 57788999999999999999999988765
No 459
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.50 E-value=0.032 Score=60.58 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=25.8
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhCcce
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSEEML 415 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~ 415 (458)
.++.-|+|+|+||+|||++|+.++...|..+
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~ 397 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKH 397 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 3456888999999999999999999876443
No 460
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.48 E-value=0.038 Score=56.82 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.1
Q ss_pred eeeecCCCCChHHHHHHHHHHhC
Q 012671 390 MLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g 412 (458)
++|.|+||+|||+++++|+..+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999996664
No 461
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.48 E-value=0.039 Score=58.38 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=27.0
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
++.-++|+||+|+|||+++..||..+ |..+..++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 35678899999999999999999877 55555444
No 462
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=94.44 E-value=0.044 Score=65.13 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=37.1
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
..+++++|.+.-.+.+..+... .....+-+-++||+|+|||+||++|+..+...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 3567788776555555444321 12334677899999999999999998876443
No 463
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.42 E-value=0.032 Score=56.99 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+-+++|||||||||+||-.++...
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~ 79 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEA 79 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457799999999999999887554
No 464
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.42 E-value=0.033 Score=56.20 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.6
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.-+++|||||||||.||..+|...
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999998774
No 465
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.41 E-value=0.058 Score=50.88 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.4
Q ss_pred cceeeecCCCCChHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIA 408 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA 408 (458)
+.++|.||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 466
>PRK04296 thymidine kinase; Provisional
Probab=94.40 E-value=0.029 Score=52.66 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=23.3
Q ss_pred ceeeecCCCCChHHHHHHHHHHh---Ccceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS---EEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~ 418 (458)
-.|++||||+|||+++..++..+ |..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 46789999999999888888765 5555555
No 467
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.039 Score=55.77 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=29.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
++-++++||+++|||-+|..||..+|..++.+.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~D 35 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLD 35 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecc
Confidence 346889999999999999999999999887754
No 468
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.38 E-value=0.047 Score=58.64 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.-++|.||+|+|||+++..||..+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 468899999999999999999766
No 469
>PRK06851 hypothetical protein; Provisional
Probab=94.38 E-value=0.032 Score=57.86 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=25.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHL 417 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~ 417 (458)
+-++|.||||||||++.+.|+..+ |.++..
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~ 247 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEV 247 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence 468999999999999999999887 655443
No 470
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=94.34 E-value=0.026 Score=60.95 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=23.5
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
....|+|++||+|||||+|-+.||.-.
T Consensus 459 ~~g~~LLItG~sG~GKtSLlRvlggLW 485 (659)
T KOG0060|consen 459 PSGQNLLITGPSGCGKTSLLRVLGGLW 485 (659)
T ss_pred cCCCeEEEECCCCCchhHHHHHHhccc
Confidence 335699999999999999999999654
No 471
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.33 E-value=0.037 Score=53.05 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=25.9
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.|-+=||.|+||+++|+.||..+|++|+.
T Consensus 6 ~IAIDGPagsGKsTvak~lA~~Lg~~yld 34 (222)
T COG0283 6 IIAIDGPAGSGKSTVAKILAEKLGFHYLD 34 (222)
T ss_pred EEEEeCCCccChHHHHHHHHHHhCCCeec
Confidence 45567999999999999999999999865
No 472
>PLN02842 nucleotide kinase
Probab=94.33 E-value=0.033 Score=59.99 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=24.6
Q ss_pred eeecCCCCChHHHHHHHHHHhCcceee
Q 012671 391 LFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 391 Ll~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
++.||||+|||++|+.|+..+|..++.
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs 27 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHIS 27 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEE
Confidence 578999999999999999999987765
No 473
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=94.32 E-value=0.041 Score=52.54 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=26.1
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.|-++|++|||||++++.++..+|.+++.
T Consensus 8 ~IglTG~iGsGKStv~~~l~~~lg~~vid 36 (204)
T PRK14733 8 PIGITGGIASGKSTATRILKEKLNLNVVC 36 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 57799999999999999999989988765
No 474
>PRK13695 putative NTPase; Provisional
Probab=94.30 E-value=0.035 Score=51.06 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.6
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+++|.|+||+|||+|+..|+..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988775
No 475
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.30 E-value=0.046 Score=56.98 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=26.3
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
+.+.++|+||+|+|||+++..||..+ |..+..++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45688999999999999999999766 44444443
No 476
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.29 E-value=0.11 Score=54.55 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.2
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+...++++||||||||++++.|++...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 4456799999999999999999999753
No 477
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.26 E-value=0.033 Score=50.58 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
..++||.||||+|||++|.+|...
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 369999999999999999888875
No 478
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.24 E-value=0.035 Score=51.44 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=20.4
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-++|+||||+|||+++..++..+
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57889999999999999888765
No 479
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.23 E-value=0.034 Score=50.31 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=23.0
Q ss_pred ecCCCCChHHHHHHHHHHhCcceee
Q 012671 393 YGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 393 ~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.|.+|||||+++.+||..+|..|+.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fid 25 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFID 25 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceec
Confidence 3899999999999999999988876
No 480
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.22 E-value=0.12 Score=55.29 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=26.1
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.+..-+|++|+||+|||+|+..++... |..++.++
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344567889999999999999987765 34555555
No 481
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=94.20 E-value=0.033 Score=49.07 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=19.3
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+|++.||||+|||+|..++...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998753
No 482
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.19 E-value=0.034 Score=57.69 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=22.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCc
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
...|++||||||||+|++.|++.+..
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987743
No 483
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.17 E-value=0.033 Score=58.19 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..-.|++||||||||+|++.|++...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Confidence 34688899999999999999998774
No 484
>PRK06851 hypothetical protein; Provisional
Probab=94.15 E-value=0.027 Score=58.41 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+-++|.||||||||++.+.|+..+
T Consensus 31 ~~~il~G~pGtGKStl~~~i~~~~ 54 (367)
T PRK06851 31 RIFILKGGPGTGKSTLMKKIGEEF 54 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999887
No 485
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=94.14 E-value=0.038 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.3
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
||+|.|+||+|||+|...+....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 68999999999999999997643
No 486
>PRK14974 cell division protein FtsY; Provisional
Probab=94.13 E-value=0.04 Score=56.62 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+.-++|.||||+|||+++..||..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678899999999999888888766
No 487
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=94.12 E-value=0.023 Score=61.51 Aligned_cols=19 Identities=53% Similarity=0.830 Sum_probs=14.9
Q ss_pred ceeeecCCCCChHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREI 407 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaL 407 (458)
-++++||||||||....-|
T Consensus 203 l~~I~GPPGTGKT~TlvEi 221 (649)
T KOG1803|consen 203 LLIIHGPPGTGKTRTLVEI 221 (649)
T ss_pred ceEeeCCCCCCceeeHHHH
Confidence 6788999999999844433
No 488
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.11 E-value=0.085 Score=49.35 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=21.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
...+++.|+||+|||+|...+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999998865
No 489
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.11 E-value=0.06 Score=56.08 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.++|++||+|+|||++..+|..+..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998874
No 490
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.10 E-value=0.035 Score=52.71 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.8
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+...+.+.||+|+|||+|.++|+...
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 44578899999999999999999875
No 491
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.10 E-value=0.034 Score=54.34 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..=+-+.||+|||||+|-+.||...
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456688999999999999999765
No 492
>PRK13973 thymidylate kinase; Provisional
Probab=94.09 E-value=0.064 Score=51.21 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=26.2
Q ss_pred ceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
=|.|-|++|+|||++++.|+..+ |..++...
T Consensus 5 ~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 5 FITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35678999999999999999999 77776654
No 493
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.05 E-value=0.052 Score=41.87 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.6
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..+|+||+|+|||++.-++...+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988665
No 494
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.04 E-value=0.035 Score=53.34 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.1
Q ss_pred CCcceeeecCCCCChHHHHHHHHHH
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+..-+.++||+|+|||+|.+||-.-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3457889999999999999999853
No 495
>PRK10867 signal recognition particle protein; Provisional
Probab=94.03 E-value=0.054 Score=57.51 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=26.4
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh----Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS----EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~----g~~~~~~~ 419 (458)
.++.-++|+||||+|||+++-.||..+ |..+..++
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~ 136 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA 136 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345678899999999999888888765 44555544
No 496
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.02 E-value=0.048 Score=56.14 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.8
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-..+|||||||||.||..+|-.
T Consensus 128 ItEI~G~~GsGKTql~lqlav~ 149 (344)
T PLN03187 128 ITEAFGEFRSGKTQLAHTLCVT 149 (344)
T ss_pred EEEEecCCCCChhHHHHHHHHH
Confidence 4559999999999999988754
No 497
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.00 E-value=0.043 Score=52.13 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=24.0
Q ss_pred cCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 384 QAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 384 ~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..+..-+.+.||+|||||+|...+|...
T Consensus 28 ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 28 IASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 4556688899999999999999999765
No 498
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.99 E-value=0.11 Score=53.21 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=24.6
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.-|-+.||||+|||+|+..|...+ |..+..+.
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356689999999999999988776 44554444
No 499
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.96 E-value=0.1 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.1
Q ss_pred cceeeecCCCCChHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~ 409 (458)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999983
No 500
>PLN02348 phosphoribulokinase
Probab=93.96 E-value=0.061 Score=56.17 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.0
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.-|-+.||||+|||+||+.|+..+|
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455789999999999999999986
Done!