Query 012671
Match_columns 458
No_of_seqs 319 out of 2187
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 13:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_L 26S protease subunit RP 99.9 3.9E-23 1.3E-27 215.4 9.8 258 148-458 11-280 (437)
2 4b4t_J 26S protease regulatory 99.8 8.6E-20 3E-24 187.9 10.9 101 352-458 142-247 (405)
3 4b4t_I 26S protease regulatory 99.8 1.5E-19 5E-24 187.1 5.8 102 351-458 175-281 (437)
4 4b4t_K 26S protease regulatory 99.8 8.5E-19 2.9E-23 182.4 9.4 102 351-458 165-271 (428)
5 4b4t_M 26S protease regulatory 99.7 4.7E-18 1.6E-22 177.0 9.9 102 351-458 174-280 (434)
6 4b4t_H 26S protease regulatory 99.7 1.2E-17 4.1E-22 174.3 10.2 101 352-458 203-308 (467)
7 3cf2_A TER ATPase, transitiona 99.6 2.6E-15 8.9E-20 166.7 7.4 101 352-458 471-576 (806)
8 3cf2_A TER ATPase, transitiona 99.5 8.3E-15 2.8E-19 162.7 8.3 101 352-458 198-303 (806)
9 3eie_A Vacuolar protein sortin 99.5 9.1E-14 3.1E-18 138.9 10.1 101 352-458 12-116 (322)
10 3cf0_A Transitional endoplasmi 99.5 1.8E-13 6.1E-18 135.6 10.7 100 353-458 10-114 (301)
11 1xwi_A SKD1 protein; VPS4B, AA 99.5 1.1E-13 3.8E-18 138.7 9.2 100 353-458 7-111 (322)
12 2qp9_X Vacuolar protein sortin 99.4 3E-13 1E-17 137.4 8.5 100 353-458 46-149 (355)
13 2qz4_A Paraplegin; AAA+, SPG7, 99.4 7.3E-13 2.5E-17 126.9 9.7 98 355-458 3-104 (262)
14 2zan_A Vacuolar protein sortin 99.4 7E-13 2.4E-17 138.6 8.8 100 353-458 129-233 (444)
15 2ce7_A Cell division protein F 99.4 1.5E-12 5E-17 137.3 10.7 100 353-458 11-114 (476)
16 1qvr_A CLPB protein; coiled co 99.4 1.3E-11 4.5E-16 138.8 18.7 220 154-428 403-629 (854)
17 2c9o_A RUVB-like 1; hexameric 99.3 1.5E-12 5.1E-17 136.4 8.3 97 352-458 31-132 (456)
18 3h4m_A Proteasome-activating n 99.3 3.7E-12 1.3E-16 123.9 10.2 100 353-458 12-116 (285)
19 1lv7_A FTSH; alpha/beta domain 99.3 3E-12 1E-16 123.1 9.0 100 353-458 7-110 (257)
20 3t15_A Ribulose bisphosphate c 99.3 2.1E-12 7.2E-17 127.6 7.8 70 383-458 32-105 (293)
21 2r62_A Cell division protease 99.3 1.7E-12 5.8E-17 125.4 6.8 100 353-458 6-109 (268)
22 3vfd_A Spastin; ATPase, microt 99.3 3.7E-12 1.3E-16 130.5 9.2 100 353-458 110-213 (389)
23 2x8a_A Nuclear valosin-contain 99.3 3.3E-12 1.1E-16 125.3 8.2 100 353-458 5-109 (274)
24 3d8b_A Fidgetin-like protein 1 99.3 4.7E-12 1.6E-16 128.4 9.6 100 353-458 79-182 (357)
25 3b9p_A CG5977-PA, isoform A; A 99.3 5.4E-12 1.9E-16 123.7 9.4 100 353-458 16-119 (297)
26 3hu3_A Transitional endoplasmi 99.2 1.4E-11 4.9E-16 130.3 9.8 99 354-458 200-303 (489)
27 2dhr_A FTSH; AAA+ protein, hex 99.2 1.6E-11 5.4E-16 130.2 9.2 100 353-458 26-129 (499)
28 1ixz_A ATP-dependent metallopr 99.2 9.2E-11 3.2E-15 112.5 10.2 101 352-458 10-114 (254)
29 1iy2_A ATP-dependent metallopr 99.1 3.2E-10 1.1E-14 110.5 10.4 100 353-458 35-138 (278)
30 1ypw_A Transitional endoplasmi 99.1 7.2E-11 2.5E-15 132.0 5.6 101 352-458 471-576 (806)
31 3syl_A Protein CBBX; photosynt 99.0 3.4E-10 1.1E-14 111.2 8.4 91 359-458 32-136 (309)
32 3hws_A ATP-dependent CLP prote 99.0 6.7E-10 2.3E-14 112.4 9.9 94 360-458 17-122 (363)
33 1ypw_A Transitional endoplasmi 99.0 4.5E-10 1.5E-14 125.6 7.8 100 353-458 199-303 (806)
34 3uk6_A RUVB-like 2; hexameric 98.8 6.6E-09 2.3E-13 104.4 9.2 65 352-419 38-104 (368)
35 1um8_A ATP-dependent CLP prote 98.8 6.9E-09 2.3E-13 105.4 8.7 71 360-433 23-116 (376)
36 1ofh_A ATP-dependent HSL prote 98.8 6.7E-09 2.3E-13 101.4 8.2 71 359-432 16-93 (310)
37 1g41_A Heat shock protein HSLU 98.8 7.1E-09 2.4E-13 108.1 8.6 72 359-433 16-94 (444)
38 3pxg_A Negative regulator of g 98.8 9.4E-09 3.2E-13 108.0 8.8 88 354-458 176-273 (468)
39 1jbk_A CLPB protein; beta barr 98.8 1.4E-08 4.8E-13 90.8 8.2 91 354-458 18-121 (195)
40 1d2n_A N-ethylmaleimide-sensit 98.8 1.4E-08 4.9E-13 98.2 8.7 69 384-458 61-130 (272)
41 2p65_A Hypothetical protein PF 98.7 1.7E-08 5.7E-13 90.4 7.4 50 354-411 18-67 (187)
42 3pfi_A Holliday junction ATP-d 98.7 4.1E-08 1.4E-12 97.7 9.9 62 355-419 26-87 (338)
43 1sxj_A Activator 1 95 kDa subu 98.7 1.8E-08 6.1E-13 107.1 6.8 67 354-420 35-110 (516)
44 3pxi_A Negative regulator of g 98.7 3.3E-08 1.1E-12 109.7 8.8 88 354-458 176-273 (758)
45 3pxi_A Negative regulator of g 98.7 6.4E-08 2.2E-12 107.3 10.9 71 359-432 492-566 (758)
46 1hqc_A RUVB; extended AAA-ATPa 98.6 8.1E-08 2.8E-12 94.6 9.6 62 355-419 9-70 (324)
47 1l8q_A Chromosomal replication 98.6 1E-07 3.4E-12 94.6 10.2 73 353-432 6-82 (324)
48 3pvs_A Replication-associated 98.6 3.6E-08 1.2E-12 103.1 6.9 59 354-420 22-83 (447)
49 1r6b_X CLPA protein; AAA+, N-t 98.6 5.2E-08 1.8E-12 107.9 8.2 68 359-429 459-527 (758)
50 3ec2_A DNA replication protein 98.6 1.4E-07 4.8E-12 85.4 8.8 72 355-431 7-83 (180)
51 3co5_A Putative two-component 98.6 3E-08 1E-12 87.1 4.2 53 360-419 6-58 (143)
52 3n70_A Transport activator; si 98.6 6.4E-08 2.2E-12 85.1 6.3 32 387-419 24-58 (145)
53 3u61_B DNA polymerase accessor 98.6 1E-07 3.5E-12 94.3 8.5 60 354-420 22-81 (324)
54 1qvr_A CLPB protein; coiled co 98.5 1.4E-07 4.8E-12 106.0 9.0 91 354-458 166-269 (854)
55 4fcw_A Chaperone protein CLPB; 98.5 2E-07 6.8E-12 91.3 8.9 61 359-419 18-82 (311)
56 3m6a_A ATP-dependent protease 98.5 9.6E-08 3.3E-12 102.2 7.0 95 358-458 81-181 (543)
57 3bos_A Putative DNA replicatio 98.5 4.9E-08 1.7E-12 91.1 3.3 62 353-419 23-87 (242)
58 2w58_A DNAI, primosome compone 98.4 3.9E-07 1.3E-11 83.8 8.2 73 354-430 21-97 (202)
59 2z4s_A Chromosomal replication 98.4 4.7E-07 1.6E-11 94.3 9.4 73 352-432 99-177 (440)
60 1in4_A RUVB, holliday junction 98.4 3.4E-07 1.2E-11 91.6 7.8 64 353-419 20-83 (334)
61 1r6b_X CLPA protein; AAA+, N-t 98.4 3.7E-07 1.3E-11 101.0 8.2 91 354-458 182-284 (758)
62 2r44_A Uncharacterized protein 98.4 3.3E-07 1.1E-11 91.0 6.1 53 357-419 26-78 (331)
63 2chg_A Replication factor C sm 98.4 7.6E-07 2.6E-11 81.3 8.1 50 354-411 13-62 (226)
64 2bjv_A PSP operon transcriptio 98.4 5.1E-07 1.7E-11 86.8 7.1 58 356-419 4-64 (265)
65 3cmw_A Protein RECA, recombina 98.3 4.2E-07 1.4E-11 107.7 7.5 106 350-458 1012-1166(1706)
66 2v1u_A Cell division control p 98.2 1.5E-06 5.3E-11 86.8 8.0 60 356-419 17-85 (387)
67 2qby_B CDC6 homolog 3, cell di 98.2 1.9E-06 6.5E-11 86.5 8.6 58 358-419 20-88 (384)
68 3te6_A Regulatory protein SIR3 98.2 1.7E-06 5.7E-11 86.6 8.0 29 384-412 42-70 (318)
69 2qgz_A Helicase loader, putati 98.2 1E-06 3.4E-11 87.5 5.9 71 355-430 121-196 (308)
70 1iqp_A RFCS; clamp loader, ext 98.2 9.3E-07 3.2E-11 86.6 5.4 51 354-412 21-71 (327)
71 1g8p_A Magnesium-chelatase 38 98.2 7.7E-07 2.6E-11 88.4 4.8 52 353-412 19-70 (350)
72 3nbx_X ATPase RAVA; AAA+ ATPas 98.2 5.4E-07 1.9E-11 95.4 3.0 44 360-413 24-67 (500)
73 2chq_A Replication factor C sm 98.1 1.5E-06 5E-11 84.9 4.9 59 353-419 12-75 (319)
74 1fnn_A CDC6P, cell division co 98.1 1.3E-05 4.4E-10 80.3 11.1 60 356-419 15-80 (389)
75 1sxj_B Activator 1 37 kDa subu 98.1 4.6E-06 1.6E-10 81.5 7.6 50 354-411 17-66 (323)
76 1sxj_D Activator 1 41 kDa subu 98.1 2.1E-06 7.3E-11 85.2 5.2 52 354-413 33-84 (353)
77 1njg_A DNA polymerase III subu 98.1 3.6E-06 1.2E-10 77.5 6.3 54 354-414 19-72 (250)
78 2qby_A CDC6 homolog 1, cell di 98.1 6.1E-06 2.1E-10 82.2 8.3 60 356-419 18-83 (386)
79 1sxj_C Activator 1 40 kDa subu 98.0 5.7E-06 2E-10 82.6 6.3 52 353-412 20-71 (340)
80 1ojl_A Transcriptional regulat 98.0 7.8E-06 2.7E-10 80.9 7.0 54 360-419 4-60 (304)
81 1jr3_A DNA polymerase III subu 98.0 8.8E-06 3E-10 81.3 7.3 53 354-413 12-64 (373)
82 1u0j_A DNA replication protein 98.0 5.6E-06 1.9E-10 80.7 5.4 27 387-413 104-130 (267)
83 1tue_A Replication protein E1; 97.9 9.1E-06 3.1E-10 76.3 5.0 29 388-416 59-87 (212)
84 1sxj_E Activator 1 40 kDa subu 97.8 1E-05 3.5E-10 80.5 3.3 51 354-411 10-60 (354)
85 2kjq_A DNAA-related protein; s 97.7 2.3E-05 7.7E-10 69.4 4.1 34 386-419 35-71 (149)
86 3trf_A Shikimate kinase, SK; a 97.7 2.6E-05 9.1E-10 70.2 4.0 32 387-418 5-36 (185)
87 1qhx_A CPT, protein (chloramph 97.6 3.4E-05 1.1E-09 69.0 4.5 32 388-419 4-35 (178)
88 3vaa_A Shikimate kinase, SK; s 97.5 5E-05 1.7E-09 69.7 4.2 34 385-418 23-56 (199)
89 3cmu_A Protein RECA, recombina 97.5 5.3E-05 1.8E-09 91.1 5.4 73 385-458 1425-1511(2050)
90 3iij_A Coilin-interacting nucl 97.5 5E-05 1.7E-09 68.3 4.0 33 387-419 11-43 (180)
91 2p5t_B PEZT; postsegregational 97.5 9.9E-05 3.4E-09 70.6 5.7 53 367-419 12-64 (253)
92 1gvn_B Zeta; postsegregational 97.5 0.00013 4.4E-09 71.5 6.3 56 364-419 10-65 (287)
93 1via_A Shikimate kinase; struc 97.4 7.4E-05 2.5E-09 66.9 3.8 31 388-418 5-35 (175)
94 2vhj_A Ntpase P4, P4; non- hyd 97.4 8.2E-05 2.8E-09 74.4 4.0 28 387-414 123-150 (331)
95 2rhm_A Putative kinase; P-loop 97.4 9.9E-05 3.4E-09 66.6 4.0 32 387-418 5-36 (193)
96 3kb2_A SPBC2 prophage-derived 97.4 0.0001 3.4E-09 65.1 3.9 30 389-418 3-32 (173)
97 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.6E-09 65.4 4.0 30 388-417 5-34 (173)
98 1y63_A LMAJ004144AAA protein; 97.4 0.0001 3.6E-09 66.8 3.9 32 387-418 10-42 (184)
99 1zuh_A Shikimate kinase; alpha 97.4 0.00011 3.6E-09 65.3 3.9 32 387-418 7-38 (168)
100 2iyv_A Shikimate kinase, SK; t 97.4 0.00012 4E-09 65.9 4.1 31 388-418 3-33 (184)
101 3k1j_A LON protease, ATP-depen 97.3 9.9E-05 3.4E-09 79.7 4.2 50 354-413 37-86 (604)
102 3lw7_A Adenylate kinase relate 97.3 0.00011 3.8E-09 64.5 3.4 29 389-418 3-31 (179)
103 1aky_A Adenylate kinase; ATP:A 97.3 0.00014 4.8E-09 67.6 3.9 32 387-418 4-35 (220)
104 2cdn_A Adenylate kinase; phosp 97.3 0.00015 5.3E-09 66.3 4.1 32 387-418 20-51 (201)
105 2c95_A Adenylate kinase 1; tra 97.3 0.00015 5E-09 65.6 3.9 32 387-418 9-40 (196)
106 3f9v_A Minichromosome maintena 97.3 3.7E-05 1.2E-09 83.1 -0.4 29 389-417 329-357 (595)
107 1tev_A UMP-CMP kinase; ploop, 97.2 0.00016 5.5E-09 65.0 3.8 30 388-417 4-33 (196)
108 1e6c_A Shikimate kinase; phosp 97.2 0.00018 6.3E-09 63.7 4.0 30 388-417 3-32 (173)
109 1ak2_A Adenylate kinase isoenz 97.2 0.00017 6E-09 67.8 4.1 32 387-418 16-47 (233)
110 3cm0_A Adenylate kinase; ATP-b 97.2 0.00015 5.1E-09 65.2 3.4 31 388-418 5-35 (186)
111 1ly1_A Polynucleotide kinase; 97.2 0.00014 4.8E-09 64.7 3.1 30 388-417 3-33 (181)
112 1kht_A Adenylate kinase; phosp 97.2 0.00018 6.1E-09 64.6 3.6 25 388-412 4-28 (192)
113 1a5t_A Delta prime, HOLB; zinc 97.2 0.00034 1.2E-08 69.7 6.0 28 386-413 23-50 (334)
114 3sr0_A Adenylate kinase; phosp 97.2 0.00019 6.4E-09 67.1 3.8 29 389-417 2-30 (206)
115 2gno_A DNA polymerase III, gam 97.2 0.00026 8.8E-09 70.1 4.8 32 388-419 19-56 (305)
116 2vli_A Antibiotic resistance p 97.2 0.00016 5.4E-09 64.7 2.9 29 388-416 6-34 (183)
117 3dl0_A Adenylate kinase; phosp 97.2 0.00019 6.5E-09 66.3 3.5 30 389-418 2-31 (216)
118 1zak_A Adenylate kinase; ATP:A 97.2 0.0002 6.7E-09 66.7 3.6 31 387-417 5-35 (222)
119 3be4_A Adenylate kinase; malar 97.2 0.00017 5.9E-09 67.1 3.2 31 388-418 6-36 (217)
120 2bwj_A Adenylate kinase 5; pho 97.2 0.0002 7E-09 64.8 3.6 31 388-418 13-43 (199)
121 1zd8_A GTP:AMP phosphotransfer 97.2 0.0002 6.9E-09 67.0 3.6 32 387-418 7-38 (227)
122 3t61_A Gluconokinase; PSI-biol 97.2 0.00025 8.7E-09 64.9 4.1 32 387-418 18-49 (202)
123 1knq_A Gluconate kinase; ALFA/ 97.1 0.00027 9.3E-09 63.0 4.1 31 387-417 8-38 (175)
124 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00019 6.5E-09 72.6 3.4 31 387-417 24-54 (359)
125 3fb4_A Adenylate kinase; psych 97.1 0.00022 7.5E-09 65.8 3.5 30 389-418 2-31 (216)
126 1qf9_A UMP/CMP kinase, protein 97.1 0.00021 7.2E-09 64.1 3.3 31 388-418 7-37 (194)
127 3umf_A Adenylate kinase; rossm 97.1 0.00024 8.1E-09 67.1 3.7 31 387-417 29-59 (217)
128 1nks_A Adenylate kinase; therm 97.1 0.0002 7E-09 64.2 3.1 24 389-412 3-26 (194)
129 1ukz_A Uridylate kinase; trans 97.1 0.00026 8.9E-09 64.7 3.7 32 387-418 15-46 (203)
130 2ze6_A Isopentenyl transferase 97.1 0.00026 9E-09 67.9 3.9 31 389-419 3-33 (253)
131 1w5s_A Origin recognition comp 97.1 0.00067 2.3E-08 68.3 7.1 52 358-411 22-76 (412)
132 3tlx_A Adenylate kinase 2; str 97.1 0.00027 9.3E-09 67.2 3.8 33 386-418 28-60 (243)
133 2pt5_A Shikimate kinase, SK; a 97.1 0.00031 1.1E-08 62.0 3.9 29 389-417 2-30 (168)
134 4eun_A Thermoresistant glucoki 97.1 0.00035 1.2E-08 64.0 4.2 32 386-417 28-59 (200)
135 1zp6_A Hypothetical protein AT 97.1 0.00025 8.5E-09 64.0 3.0 33 387-419 9-41 (191)
136 1e4v_A Adenylate kinase; trans 97.0 0.00032 1.1E-08 64.9 3.4 30 389-418 2-31 (214)
137 2v54_A DTMP kinase, thymidylat 97.0 0.00053 1.8E-08 62.3 4.8 33 387-419 4-37 (204)
138 2qen_A Walker-type ATPase; unk 97.0 0.0024 8.1E-08 62.5 9.3 45 358-412 12-56 (350)
139 2jaq_A Deoxyguanosine kinase; 96.9 0.00051 1.7E-08 62.2 3.6 29 389-417 2-30 (205)
140 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00058 2E-08 65.6 4.2 33 387-419 4-39 (260)
141 2plr_A DTMP kinase, probable t 96.9 0.00066 2.3E-08 61.8 4.4 27 388-414 5-31 (213)
142 2pez_A Bifunctional 3'-phospho 96.9 0.00066 2.3E-08 60.8 4.2 33 387-419 5-40 (179)
143 2xb4_A Adenylate kinase; ATP-b 96.9 0.00058 2E-08 63.9 3.8 30 389-418 2-31 (223)
144 3uie_A Adenylyl-sulfate kinase 96.8 0.0014 4.6E-08 60.1 6.1 29 384-412 22-50 (200)
145 1cke_A CK, MSSA, protein (cyti 96.8 0.0007 2.4E-08 62.7 4.1 30 388-417 6-35 (227)
146 2pbr_A DTMP kinase, thymidylat 96.8 0.00073 2.5E-08 60.7 4.0 31 389-419 2-35 (195)
147 2z0h_A DTMP kinase, thymidylat 96.8 0.00097 3.3E-08 60.1 4.7 30 390-419 3-35 (197)
148 2wwf_A Thymidilate kinase, put 96.8 0.00052 1.8E-08 62.8 2.8 30 387-416 10-39 (212)
149 3nwj_A ATSK2; P loop, shikimat 96.8 0.00078 2.7E-08 64.8 4.0 32 387-418 48-79 (250)
150 3r20_A Cytidylate kinase; stru 96.8 0.00078 2.7E-08 64.2 3.8 30 388-417 10-39 (233)
151 2bbw_A Adenylate kinase 4, AK4 96.7 0.00091 3.1E-08 63.3 4.1 31 387-417 27-57 (246)
152 1svm_A Large T antigen; AAA+ f 96.7 0.0013 4.6E-08 67.0 5.5 34 384-417 166-199 (377)
153 3crm_A TRNA delta(2)-isopenten 96.7 0.00084 2.9E-08 67.0 3.9 32 388-419 6-37 (323)
154 2qor_A Guanylate kinase; phosp 96.7 0.00092 3.2E-08 61.4 3.9 31 382-412 7-37 (204)
155 1nn5_A Similar to deoxythymidy 96.7 0.0007 2.4E-08 62.0 2.9 28 387-414 9-36 (215)
156 2if2_A Dephospho-COA kinase; a 96.7 0.00087 3E-08 61.2 3.5 29 389-418 3-31 (204)
157 3ake_A Cytidylate kinase; CMP 96.6 0.0011 3.8E-08 60.3 3.8 30 389-418 4-33 (208)
158 1jjv_A Dephospho-COA kinase; P 96.6 0.00094 3.2E-08 61.1 3.2 28 389-417 4-31 (206)
159 2fna_A Conserved hypothetical 96.6 0.0019 6.6E-08 63.2 5.2 32 388-419 31-62 (357)
160 1ye8_A Protein THEP1, hypothet 96.5 0.0014 4.8E-08 59.5 3.6 27 389-415 2-28 (178)
161 3tau_A Guanylate kinase, GMP k 96.5 0.0013 4.4E-08 60.8 3.3 27 386-412 7-33 (208)
162 4e22_A Cytidylate kinase; P-lo 96.5 0.0017 5.7E-08 62.0 4.2 31 387-417 27-57 (252)
163 2yvu_A Probable adenylyl-sulfa 96.5 0.0011 3.8E-08 59.7 2.7 28 386-413 12-39 (186)
164 1uf9_A TT1252 protein; P-loop, 96.5 0.0016 5.4E-08 59.0 3.6 31 387-418 8-38 (203)
165 2h92_A Cytidylate kinase; ross 96.5 0.0019 6.5E-08 59.6 4.2 31 388-418 4-34 (219)
166 1q3t_A Cytidylate kinase; nucl 96.4 0.002 6.7E-08 60.6 4.3 32 386-417 15-46 (236)
167 2bdt_A BH3686; alpha-beta prot 96.4 0.002 7E-08 58.0 3.8 25 389-413 4-28 (189)
168 1ltq_A Polynucleotide kinase; 96.3 0.0021 7.3E-08 62.3 3.5 29 388-416 3-32 (301)
169 2grj_A Dephospho-COA kinase; T 96.2 0.0024 8.1E-08 58.8 3.5 31 388-418 13-43 (192)
170 1uj2_A Uridine-cytidine kinase 96.2 0.0027 9.2E-08 60.4 3.9 29 387-415 22-50 (252)
171 2qt1_A Nicotinamide riboside k 96.2 0.002 6.8E-08 59.0 2.9 33 387-419 21-54 (207)
172 1vht_A Dephospho-COA kinase; s 96.2 0.0028 9.5E-08 58.5 3.7 30 388-418 5-34 (218)
173 2j41_A Guanylate kinase; GMP, 96.2 0.0023 7.9E-08 58.1 3.1 26 386-411 5-30 (207)
174 4akg_A Glutathione S-transfera 96.2 0.006 2.1E-07 75.7 7.4 53 360-419 625-677 (2695)
175 2zr9_A Protein RECA, recombina 96.2 0.0039 1.3E-07 62.7 4.9 26 386-411 60-85 (349)
176 2cvh_A DNA repair and recombin 96.2 0.0039 1.3E-07 57.0 4.5 35 385-419 18-52 (220)
177 3a8t_A Adenylate isopentenyltr 96.1 0.0024 8.1E-08 64.1 3.1 30 388-417 41-70 (339)
178 1m7g_A Adenylylsulfate kinase; 96.1 0.0028 9.7E-08 58.4 3.4 27 386-412 24-50 (211)
179 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.003 1E-07 58.0 3.4 26 386-411 22-47 (235)
180 3fdi_A Uncharacterized protein 96.1 0.0032 1.1E-07 58.2 3.6 29 389-417 8-36 (201)
181 1kgd_A CASK, peripheral plasma 96.1 0.0034 1.2E-07 56.5 3.6 25 388-412 6-30 (180)
182 1ex7_A Guanylate kinase; subst 96.1 0.004 1.4E-07 57.1 4.0 24 388-411 2-25 (186)
183 3asz_A Uridine kinase; cytidin 96.0 0.0033 1.1E-07 57.6 3.4 31 387-417 6-38 (211)
184 3tr0_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 56.7 3.6 25 387-411 7-31 (205)
185 2f6r_A COA synthase, bifunctio 96.0 0.0035 1.2E-07 60.9 3.7 30 388-418 76-105 (281)
186 3cmu_A Protein RECA, recombina 96.0 0.007 2.4E-07 73.1 6.7 35 385-419 1079-1116(2050)
187 3c8u_A Fructokinase; YP_612366 96.0 0.0049 1.7E-07 56.7 4.3 27 386-412 21-47 (208)
188 3upu_A ATP-dependent DNA helic 96.0 0.008 2.8E-07 62.4 6.3 48 356-411 22-69 (459)
189 3zvl_A Bifunctional polynucleo 95.9 0.0031 1.1E-07 64.8 2.9 31 387-417 258-288 (416)
190 3a00_A Guanylate kinase, GMP k 95.9 0.0048 1.7E-07 55.7 3.8 25 388-412 2-26 (186)
191 1xp8_A RECA protein, recombina 95.9 0.0096 3.3E-07 60.3 6.4 34 386-419 73-109 (366)
192 1rz3_A Hypothetical protein rb 95.9 0.01 3.6E-07 54.2 6.1 26 386-411 21-46 (201)
193 2r8r_A Sensor protein; KDPD, P 95.9 0.0052 1.8E-07 58.3 4.0 29 389-417 8-39 (228)
194 2axn_A 6-phosphofructo-2-kinas 95.8 0.0037 1.3E-07 66.3 3.1 29 387-415 35-63 (520)
195 1n0w_A DNA repair protein RAD5 95.8 0.0049 1.7E-07 57.2 3.5 25 386-410 23-47 (243)
196 3d3q_A TRNA delta(2)-isopenten 95.8 0.0051 1.7E-07 61.8 3.8 31 388-418 8-38 (340)
197 3foz_A TRNA delta(2)-isopenten 95.7 0.0059 2E-07 60.6 4.0 31 388-418 11-41 (316)
198 3gmt_A Adenylate kinase; ssgci 95.7 0.0046 1.6E-07 58.7 3.1 30 389-418 10-39 (230)
199 1lvg_A Guanylate kinase, GMP k 95.7 0.0052 1.8E-07 56.3 3.3 26 386-411 3-28 (198)
200 2dr3_A UPF0273 protein PH0284; 95.6 0.0058 2E-07 56.8 3.3 34 386-419 22-58 (247)
201 1ny5_A Transcriptional regulat 95.6 0.021 7.2E-07 58.0 7.7 33 387-419 160-195 (387)
202 4a74_A DNA repair and recombin 95.6 0.0056 1.9E-07 56.3 3.1 26 386-411 24-49 (231)
203 1gtv_A TMK, thymidylate kinase 95.6 0.0029 9.9E-08 57.8 1.0 25 389-413 2-26 (214)
204 2ehv_A Hypothetical protein PH 95.6 0.0059 2E-07 56.9 3.1 23 386-408 29-51 (251)
205 2z43_A DNA repair and recombin 95.6 0.0081 2.8E-07 59.5 4.2 27 385-411 105-131 (324)
206 3exa_A TRNA delta(2)-isopenten 95.6 0.0066 2.2E-07 60.4 3.5 29 389-417 5-33 (322)
207 1bif_A 6-phosphofructo-2-kinas 95.5 0.0054 1.9E-07 63.9 2.9 30 387-416 39-68 (469)
208 4b3f_X DNA-binding protein smu 95.5 0.0059 2E-07 66.2 3.1 31 389-419 207-240 (646)
209 3eph_A TRNA isopentenyltransfe 95.5 0.0073 2.5E-07 62.0 3.6 31 387-417 2-32 (409)
210 2zts_A Putative uncharacterize 95.4 0.015 5.2E-07 54.0 5.3 35 385-419 28-66 (251)
211 2qmh_A HPR kinase/phosphorylas 95.4 0.0074 2.5E-07 56.2 2.9 26 387-412 34-59 (205)
212 3ney_A 55 kDa erythrocyte memb 95.4 0.011 3.9E-07 54.7 4.2 26 387-412 19-44 (197)
213 3lnc_A Guanylate kinase, GMP k 95.4 0.0054 1.8E-07 57.2 2.0 25 387-411 27-52 (231)
214 3hdt_A Putative kinase; struct 95.4 0.0088 3E-07 56.4 3.5 29 389-417 16-44 (223)
215 2r2a_A Uncharacterized protein 95.3 0.0081 2.8E-07 55.6 3.1 22 389-410 7-28 (199)
216 1z6g_A Guanylate kinase; struc 95.3 0.0093 3.2E-07 55.5 3.5 26 386-411 22-47 (218)
217 4eaq_A DTMP kinase, thymidylat 95.3 0.0095 3.2E-07 56.1 3.5 27 387-413 26-52 (229)
218 3hr8_A Protein RECA; alpha and 95.3 0.0077 2.6E-07 60.9 3.0 26 386-411 60-85 (356)
219 1nlf_A Regulatory protein REPA 95.2 0.009 3.1E-07 57.5 3.3 25 387-411 30-54 (279)
220 1odf_A YGR205W, hypothetical 3 95.2 0.02 6.9E-07 56.0 5.7 28 386-413 30-57 (290)
221 4gp7_A Metallophosphoesterase; 95.2 0.0083 2.8E-07 53.5 2.7 21 387-407 9-29 (171)
222 1znw_A Guanylate kinase, GMP k 95.2 0.011 3.6E-07 54.3 3.4 25 387-411 20-44 (207)
223 2v9p_A Replication protein E1; 95.2 0.013 4.6E-07 57.8 4.3 29 383-411 122-150 (305)
224 1s96_A Guanylate kinase, GMP k 95.2 0.011 3.8E-07 55.4 3.5 28 385-412 14-41 (219)
225 3aez_A Pantothenate kinase; tr 95.1 0.022 7.6E-07 56.3 5.8 27 386-412 89-115 (312)
226 1x6v_B Bifunctional 3'-phospho 95.1 0.013 4.4E-07 63.5 4.3 33 387-419 52-87 (630)
227 1v5w_A DMC1, meiotic recombina 95.1 0.014 4.8E-07 58.3 4.3 25 386-410 121-145 (343)
228 2jeo_A Uridine-cytidine kinase 95.1 0.012 4.1E-07 55.6 3.5 27 388-414 26-52 (245)
229 3e1s_A Exodeoxyribonuclease V, 95.0 0.01 3.5E-07 63.7 3.2 31 388-418 205-238 (574)
230 1u94_A RECA protein, recombina 95.0 0.012 4E-07 59.5 3.4 34 386-419 62-98 (356)
231 3cmw_A Protein RECA, recombina 95.0 0.026 9.1E-07 67.3 6.9 35 385-419 730-767 (1706)
232 3v9p_A DTMP kinase, thymidylat 95.0 0.029 9.9E-07 53.0 6.0 25 388-412 26-50 (227)
233 1htw_A HI0065; nucleotide-bind 95.0 0.013 4.4E-07 52.2 3.3 28 385-412 31-58 (158)
234 1cr0_A DNA primase/helicase; R 95.0 0.012 4.2E-07 56.9 3.4 27 385-411 33-59 (296)
235 3jvv_A Twitching mobility prot 95.0 0.024 8.2E-07 57.1 5.6 27 387-413 123-149 (356)
236 2fz4_A DNA repair protein RAD2 94.9 0.017 5.8E-07 54.5 3.8 31 389-419 110-140 (237)
237 2i1q_A DNA repair and recombin 94.8 0.013 4.6E-07 57.5 3.1 25 386-410 97-121 (322)
238 1rj9_A FTSY, signal recognitio 94.8 0.016 5.6E-07 57.1 3.6 26 386-411 101-126 (304)
239 4edh_A DTMP kinase, thymidylat 94.8 0.026 9E-07 52.6 4.9 31 388-418 7-40 (213)
240 2eyu_A Twitching motility prot 94.8 0.016 5.4E-07 55.8 3.4 28 385-412 23-50 (261)
241 2i3b_A HCR-ntpase, human cance 94.7 0.015 5.3E-07 53.2 3.1 23 389-411 3-25 (189)
242 3dzd_A Transcriptional regulat 94.6 0.043 1.5E-06 55.3 6.4 55 359-419 130-186 (368)
243 2orw_A Thymidine kinase; TMTK, 94.6 0.025 8.4E-07 51.4 4.1 31 388-418 4-37 (184)
244 1p5z_B DCK, deoxycytidine kina 94.5 0.0089 3.1E-07 57.0 1.1 30 386-415 23-53 (263)
245 2px0_A Flagellar biosynthesis 94.5 0.018 6.3E-07 56.4 3.3 26 386-411 104-129 (296)
246 2gk6_A Regulator of nonsense t 94.5 0.017 5.7E-07 62.5 3.2 23 389-411 197-219 (624)
247 1pzn_A RAD51, DNA repair and r 94.5 0.017 5.8E-07 58.0 3.1 27 385-411 129-155 (349)
248 3kta_A Chromosome segregation 94.5 0.02 6.7E-07 51.0 3.1 24 389-412 28-51 (182)
249 1sq5_A Pantothenate kinase; P- 94.5 0.03 1E-06 55.0 4.7 25 388-412 81-105 (308)
250 2v3c_C SRP54, signal recogniti 94.4 0.018 6.3E-07 59.5 3.2 26 386-411 98-123 (432)
251 2ocp_A DGK, deoxyguanosine kin 94.4 0.023 7.7E-07 53.4 3.6 25 388-412 3-27 (241)
252 1vma_A Cell division protein F 94.4 0.02 7E-07 56.4 3.3 26 386-411 103-128 (306)
253 1m8p_A Sulfate adenylyltransfe 94.4 0.036 1.2E-06 59.4 5.4 32 388-419 397-432 (573)
254 3tqc_A Pantothenate kinase; bi 94.4 0.041 1.4E-06 54.7 5.4 24 389-412 94-117 (321)
255 1a7j_A Phosphoribulokinase; tr 94.4 0.012 4.2E-07 57.4 1.6 24 389-412 7-30 (290)
256 4akg_A Glutathione S-transfera 94.3 0.064 2.2E-06 66.8 8.1 35 385-419 1607-1641(2695)
257 3tmk_A Thymidylate kinase; pho 94.3 0.045 1.5E-06 51.3 5.2 32 388-419 6-37 (216)
258 3b9q_A Chloroplast SRP recepto 94.2 0.023 7.9E-07 55.9 3.3 26 386-411 99-124 (302)
259 2ged_A SR-beta, signal recogni 94.2 0.029 9.8E-07 49.9 3.6 26 386-411 47-72 (193)
260 3e70_C DPA, signal recognition 94.2 0.024 8.3E-07 56.5 3.4 27 385-411 127-153 (328)
261 1p9r_A General secretion pathw 94.1 0.057 1.9E-06 55.6 6.0 51 354-413 143-193 (418)
262 1c9k_A COBU, adenosylcobinamid 94.1 0.023 7.8E-07 51.9 2.6 28 390-418 2-29 (180)
263 2ewv_A Twitching motility prot 94.0 0.025 8.7E-07 57.2 3.2 28 385-412 134-161 (372)
264 3io5_A Recombination and repai 94.0 0.024 8.3E-07 56.4 3.0 28 384-411 25-52 (333)
265 3kl4_A SRP54, signal recogniti 94.0 0.024 8.3E-07 58.7 3.1 26 386-411 96-121 (433)
266 3bh0_A DNAB-like replicative h 94.0 0.032 1.1E-06 55.0 3.7 35 385-419 66-103 (315)
267 1w36_D RECD, exodeoxyribonucle 93.9 0.026 8.8E-07 60.9 3.2 24 388-411 165-188 (608)
268 3lda_A DNA repair protein RAD5 93.9 0.026 8.8E-07 57.9 2.9 26 385-410 176-201 (400)
269 3b85_A Phosphate starvation-in 93.8 0.026 9.1E-07 52.4 2.6 23 388-410 23-45 (208)
270 1nrj_B SR-beta, signal recogni 93.8 0.035 1.2E-06 50.5 3.4 25 387-411 12-36 (218)
271 2og2_A Putative signal recogni 93.7 0.033 1.1E-06 56.2 3.3 26 386-411 156-181 (359)
272 2dyk_A GTP-binding protein; GT 93.7 0.034 1.2E-06 47.4 3.0 24 388-411 2-25 (161)
273 2b8t_A Thymidine kinase; deoxy 93.6 0.047 1.6E-06 51.4 4.0 32 388-419 13-47 (223)
274 3tqf_A HPR(Ser) kinase; transf 93.6 0.041 1.4E-06 50.1 3.4 24 387-410 16-39 (181)
275 2f9l_A RAB11B, member RAS onco 93.6 0.034 1.2E-06 50.1 2.9 23 389-411 7-29 (199)
276 1np6_A Molybdopterin-guanine d 93.6 0.037 1.3E-06 50.0 3.1 24 388-411 7-30 (174)
277 2gza_A Type IV secretion syste 93.6 0.031 1.1E-06 56.2 2.9 28 386-413 174-201 (361)
278 1xjc_A MOBB protein homolog; s 93.6 0.038 1.3E-06 49.8 3.2 32 388-419 5-39 (169)
279 1g8f_A Sulfate adenylyltransfe 93.5 0.034 1.1E-06 58.8 3.1 26 388-413 396-421 (511)
280 3dm5_A SRP54, signal recogniti 93.5 0.036 1.2E-06 57.5 3.3 34 386-419 99-135 (443)
281 1g5t_A COB(I)alamin adenosyltr 93.5 0.055 1.9E-06 50.0 4.1 36 388-423 29-67 (196)
282 3tif_A Uncharacterized ABC tra 93.5 0.03 1E-06 52.9 2.4 27 385-411 29-55 (235)
283 2oap_1 GSPE-2, type II secreti 93.5 0.033 1.1E-06 58.9 2.9 27 387-413 260-286 (511)
284 1lw7_A Transcriptional regulat 93.4 0.034 1.2E-06 55.7 2.9 29 387-415 170-198 (365)
285 2wjy_A Regulator of nonsense t 93.4 0.034 1.2E-06 61.9 3.1 23 389-411 373-395 (800)
286 2wsm_A Hydrogenase expression/ 93.4 0.088 3E-06 48.0 5.4 26 387-412 30-55 (221)
287 2pcj_A ABC transporter, lipopr 93.4 0.028 9.7E-07 52.6 2.1 25 387-411 30-54 (224)
288 1z2a_A RAS-related protein RAB 93.4 0.04 1.4E-06 47.3 2.9 23 389-411 7-29 (168)
289 2r6a_A DNAB helicase, replicat 93.4 0.044 1.5E-06 56.7 3.7 35 385-419 201-239 (454)
290 2cbz_A Multidrug resistance-as 93.3 0.032 1.1E-06 52.8 2.4 27 385-411 29-55 (237)
291 2onk_A Molybdate/tungstate ABC 93.3 0.037 1.3E-06 52.6 2.8 26 385-411 23-48 (240)
292 1kao_A RAP2A; GTP-binding prot 93.3 0.042 1.4E-06 46.9 3.0 23 389-411 5-27 (167)
293 3sop_A Neuronal-specific septi 93.3 0.039 1.3E-06 53.3 2.9 23 389-411 4-26 (270)
294 2ce2_X GTPase HRAS; signaling 93.2 0.041 1.4E-06 46.8 2.7 23 389-411 5-27 (166)
295 1zu4_A FTSY; GTPase, signal re 93.2 0.045 1.5E-06 54.3 3.3 26 386-411 104-129 (320)
296 2q6t_A DNAB replication FORK h 93.2 0.046 1.6E-06 56.4 3.5 35 385-419 198-236 (444)
297 1oix_A RAS-related protein RAB 93.2 0.042 1.4E-06 49.3 2.8 24 389-412 31-54 (191)
298 1u8z_A RAS-related protein RAL 93.2 0.045 1.5E-06 46.7 2.9 24 388-411 5-28 (168)
299 2yhs_A FTSY, cell division pro 93.2 0.045 1.5E-06 57.6 3.4 26 386-411 292-317 (503)
300 1ek0_A Protein (GTP-binding pr 93.1 0.046 1.6E-06 46.9 2.9 23 389-411 5-27 (170)
301 1z6t_A APAF-1, apoptotic prote 93.1 0.078 2.7E-06 56.1 5.3 45 359-409 125-169 (591)
302 3lv8_A DTMP kinase, thymidylat 93.1 0.044 1.5E-06 52.0 2.9 26 387-412 27-52 (236)
303 1b0u_A Histidine permease; ABC 93.1 0.037 1.3E-06 53.2 2.4 27 386-412 31-57 (262)
304 1sgw_A Putative ABC transporte 93.0 0.039 1.3E-06 51.5 2.4 25 387-411 35-59 (214)
305 1wms_A RAB-9, RAB9, RAS-relate 93.0 0.05 1.7E-06 47.3 3.0 23 388-410 8-30 (177)
306 1z0j_A RAB-22, RAS-related pro 93.0 0.051 1.7E-06 46.7 3.0 23 389-411 8-30 (170)
307 2nzj_A GTP-binding protein REM 92.9 0.049 1.7E-06 47.2 2.8 23 388-410 5-27 (175)
308 2npi_A Protein CLP1; CLP1-PCF1 92.9 0.091 3.1E-06 54.8 5.3 27 385-411 136-162 (460)
309 3fmo_B ATP-dependent RNA helic 92.9 0.14 4.9E-06 49.8 6.4 52 353-404 90-148 (300)
310 1ky3_A GTP-binding protein YPT 92.9 0.052 1.8E-06 47.2 3.0 25 387-411 8-32 (182)
311 3fvq_A Fe(3+) IONS import ATP- 92.9 0.048 1.6E-06 55.1 3.1 26 386-411 29-54 (359)
312 2j37_W Signal recognition part 92.9 0.061 2.1E-06 56.7 4.0 34 386-419 100-136 (504)
313 3f8t_A Predicted ATPase involv 92.9 0.038 1.3E-06 57.8 2.4 48 360-411 215-263 (506)
314 2zu0_C Probable ATP-dependent 92.9 0.048 1.7E-06 52.5 2.9 26 385-410 44-69 (267)
315 3cr8_A Sulfate adenylyltranfer 92.9 0.029 9.9E-07 59.9 1.5 26 387-412 369-394 (552)
316 1mv5_A LMRA, multidrug resista 92.9 0.039 1.3E-06 52.3 2.2 27 385-411 26-52 (243)
317 1g6h_A High-affinity branched- 92.9 0.039 1.3E-06 52.8 2.2 25 387-411 33-57 (257)
318 2xzl_A ATP-dependent helicase 92.9 0.046 1.6E-06 60.9 3.1 22 389-410 377-398 (802)
319 2d2e_A SUFC protein; ABC-ATPas 92.9 0.046 1.6E-06 52.0 2.7 24 387-410 29-52 (250)
320 1g16_A RAS-related protein SEC 92.9 0.05 1.7E-06 46.7 2.7 22 389-410 5-26 (170)
321 4a1f_A DNAB helicase, replicat 92.8 0.077 2.6E-06 53.1 4.4 35 385-419 44-81 (338)
322 3ld9_A DTMP kinase, thymidylat 92.8 0.075 2.5E-06 50.0 4.1 27 387-413 21-47 (223)
323 2it1_A 362AA long hypothetical 92.8 0.048 1.6E-06 55.1 2.9 25 387-411 29-53 (362)
324 3b6e_A Interferon-induced heli 92.8 0.043 1.5E-06 49.6 2.4 24 388-411 49-72 (216)
325 2pt7_A CAG-ALFA; ATPase, prote 92.8 0.028 9.7E-07 55.9 1.2 27 387-413 171-197 (330)
326 1r8s_A ADP-ribosylation factor 92.8 0.055 1.9E-06 46.4 2.9 23 389-411 2-24 (164)
327 3rlf_A Maltose/maltodextrin im 92.8 0.05 1.7E-06 55.4 2.9 25 387-411 29-53 (381)
328 4i1u_A Dephospho-COA kinase; s 92.7 0.11 3.6E-06 48.6 4.9 29 389-418 11-39 (210)
329 2ff7_A Alpha-hemolysin translo 92.7 0.042 1.4E-06 52.3 2.2 26 386-411 34-59 (247)
330 2ixe_A Antigen peptide transpo 92.7 0.044 1.5E-06 52.9 2.4 27 385-411 43-69 (271)
331 2pze_A Cystic fibrosis transme 92.7 0.044 1.5E-06 51.5 2.3 26 386-411 33-58 (229)
332 2gks_A Bifunctional SAT/APS ki 92.7 0.1 3.4E-06 55.6 5.3 26 388-413 373-398 (546)
333 1ji0_A ABC transporter; ATP bi 92.7 0.043 1.5E-06 51.9 2.2 25 387-411 32-56 (240)
334 1z08_A RAS-related protein RAB 92.7 0.059 2E-06 46.4 2.9 24 388-411 7-30 (170)
335 1r2q_A RAS-related protein RAB 92.7 0.059 2E-06 46.2 2.9 23 388-410 7-29 (170)
336 3bgw_A DNAB-like replicative h 92.7 0.078 2.7E-06 54.9 4.3 35 385-419 195-232 (444)
337 2ghi_A Transport protein; mult 92.7 0.045 1.5E-06 52.5 2.4 27 385-411 44-70 (260)
338 2olj_A Amino acid ABC transpor 92.7 0.046 1.6E-06 52.7 2.4 27 385-411 48-74 (263)
339 2zej_A Dardarin, leucine-rich 92.6 0.047 1.6E-06 48.5 2.3 21 389-409 4-24 (184)
340 2yyz_A Sugar ABC transporter, 92.6 0.058 2E-06 54.4 3.2 26 386-411 28-53 (359)
341 3p32_A Probable GTPase RV1496/ 92.6 0.15 5.3E-06 50.8 6.3 32 387-418 79-113 (355)
342 3q85_A GTP-binding protein REM 92.6 0.057 2E-06 46.5 2.7 20 389-408 4-23 (169)
343 2qi9_C Vitamin B12 import ATP- 92.6 0.046 1.6E-06 52.2 2.3 27 386-412 25-51 (249)
344 2zuo_A MVP, major vault protei 92.6 12 0.0004 41.3 21.1 53 94-147 660-714 (861)
345 1c1y_A RAS-related protein RAP 92.6 0.062 2.1E-06 46.0 2.9 22 389-410 5-26 (167)
346 1z47_A CYSA, putative ABC-tran 92.6 0.058 2E-06 54.4 3.1 25 387-411 41-65 (355)
347 2wji_A Ferrous iron transport 92.6 0.058 2E-06 47.0 2.7 22 389-410 5-26 (165)
348 1v43_A Sugar-binding transport 92.6 0.062 2.1E-06 54.5 3.3 25 387-411 37-61 (372)
349 3bc1_A RAS-related protein RAB 92.5 0.061 2.1E-06 47.2 2.9 23 388-410 12-34 (195)
350 2erx_A GTP-binding protein DI- 92.5 0.061 2.1E-06 46.2 2.8 22 389-410 5-26 (172)
351 3gfo_A Cobalt import ATP-bindi 92.5 0.048 1.6E-06 52.9 2.3 25 387-411 34-58 (275)
352 1vpl_A ABC transporter, ATP-bi 92.5 0.05 1.7E-06 52.1 2.4 26 386-411 40-65 (256)
353 3k53_A Ferrous iron transport 92.5 0.05 1.7E-06 52.0 2.4 24 387-410 3-26 (271)
354 2yz2_A Putative ABC transporte 92.5 0.05 1.7E-06 52.3 2.4 26 386-411 32-57 (266)
355 2hxs_A RAB-26, RAS-related pro 92.5 0.057 1.9E-06 47.0 2.5 23 388-410 7-29 (178)
356 2hf9_A Probable hydrogenase ni 92.4 0.08 2.8E-06 48.4 3.7 28 387-414 38-65 (226)
357 3q72_A GTP-binding protein RAD 92.4 0.054 1.9E-06 46.5 2.4 21 389-409 4-24 (166)
358 2f1r_A Molybdopterin-guanine d 92.4 0.034 1.2E-06 50.0 1.1 26 388-413 3-28 (171)
359 3tw8_B RAS-related protein RAB 92.4 0.058 2E-06 46.8 2.6 23 388-410 10-32 (181)
360 1g29_1 MALK, maltose transport 92.4 0.062 2.1E-06 54.5 3.1 25 387-411 29-53 (372)
361 2y8e_A RAB-protein 6, GH09086P 92.4 0.063 2.2E-06 46.5 2.7 23 388-410 15-37 (179)
362 2ihy_A ABC transporter, ATP-bi 92.3 0.051 1.7E-06 52.8 2.3 26 386-411 46-71 (279)
363 2wjg_A FEOB, ferrous iron tran 92.3 0.065 2.2E-06 47.2 2.7 23 388-410 8-30 (188)
364 4tmk_A Protein (thymidylate ki 92.3 0.068 2.3E-06 49.8 3.0 24 389-412 5-28 (213)
365 4dsu_A GTPase KRAS, isoform 2B 92.3 0.071 2.4E-06 46.7 3.0 23 389-411 6-28 (189)
366 1upt_A ARL1, ADP-ribosylation 92.3 0.071 2.4E-06 45.9 2.9 23 388-410 8-30 (171)
367 4g1u_C Hemin import ATP-bindin 92.3 0.059 2E-06 51.9 2.6 26 386-411 36-61 (266)
368 1z0f_A RAB14, member RAS oncog 92.2 0.072 2.5E-06 46.2 2.9 24 388-411 16-39 (179)
369 3con_A GTPase NRAS; structural 92.2 0.071 2.4E-06 47.1 2.9 24 388-411 22-45 (190)
370 2oil_A CATX-8, RAS-related pro 92.2 0.071 2.4E-06 47.4 2.9 24 388-411 26-49 (193)
371 3d31_A Sulfate/molybdate ABC t 92.2 0.051 1.7E-06 54.6 2.2 26 386-411 25-50 (348)
372 2a9k_A RAS-related protein RAL 92.2 0.073 2.5E-06 46.5 2.9 24 388-411 19-42 (187)
373 4ag6_A VIRB4 ATPase, type IV s 92.2 0.12 4.2E-06 52.0 5.0 24 388-411 36-59 (392)
374 2nq2_C Hypothetical ABC transp 92.2 0.055 1.9E-06 51.7 2.2 25 387-411 31-55 (253)
375 2lkc_A Translation initiation 92.2 0.085 2.9E-06 45.8 3.3 24 387-410 8-31 (178)
376 2obl_A ESCN; ATPase, hydrolase 92.1 0.09 3.1E-06 52.7 3.9 30 387-416 71-100 (347)
377 2xxa_A Signal recognition part 92.1 0.075 2.6E-06 54.9 3.3 27 385-411 98-124 (433)
378 1ls1_A Signal recognition part 92.1 0.078 2.7E-06 51.8 3.3 26 386-411 97-122 (295)
379 2fn4_A P23, RAS-related protei 92.1 0.073 2.5E-06 46.2 2.8 23 388-410 10-32 (181)
380 2efe_B Small GTP-binding prote 92.0 0.078 2.7E-06 46.2 2.9 23 388-410 13-35 (181)
381 2bme_A RAB4A, RAS-related prot 92.0 0.072 2.5E-06 46.7 2.7 24 388-411 11-34 (186)
382 1m7b_A RND3/RHOE small GTP-bin 92.0 0.072 2.5E-06 47.1 2.7 24 388-411 8-31 (184)
383 4hlc_A DTMP kinase, thymidylat 92.0 0.14 4.8E-06 47.2 4.8 30 390-419 5-36 (205)
384 2g6b_A RAS-related protein RAB 92.0 0.079 2.7E-06 46.1 2.9 24 388-411 11-34 (180)
385 3clv_A RAB5 protein, putative; 92.0 0.08 2.8E-06 46.7 3.0 23 388-410 8-30 (208)
386 1mh1_A RAC1; GTP-binding, GTPa 92.0 0.08 2.7E-06 46.2 2.9 23 389-411 7-29 (186)
387 3kkq_A RAS-related protein M-R 91.9 0.082 2.8E-06 46.3 2.9 24 388-411 19-42 (183)
388 1tf7_A KAIC; homohexamer, hexa 91.9 0.08 2.7E-06 55.8 3.3 27 385-411 279-305 (525)
389 3t1o_A Gliding protein MGLA; G 91.9 0.082 2.8E-06 46.6 2.9 24 388-411 15-38 (198)
390 2dpy_A FLII, flagellum-specifi 91.9 0.097 3.3E-06 54.2 3.9 30 387-416 157-186 (438)
391 3gd7_A Fusion complex of cysti 91.7 0.081 2.8E-06 54.0 3.1 27 385-411 45-71 (390)
392 3bwd_D RAC-like GTP-binding pr 91.7 0.087 3E-06 45.9 2.9 24 388-411 9-32 (182)
393 1t6n_A Probable ATP-dependent 91.7 0.23 7.7E-06 45.3 5.8 57 355-411 14-75 (220)
394 3tkl_A RAS-related protein RAB 91.7 0.088 3E-06 46.6 2.9 24 388-411 17-40 (196)
395 1qhl_A Protein (cell division 91.7 0.039 1.3E-06 52.1 0.6 23 390-412 30-52 (227)
396 2gf9_A RAS-related protein RAB 91.7 0.089 3E-06 46.6 2.9 24 388-411 23-46 (189)
397 1tf7_A KAIC; homohexamer, hexa 91.7 0.086 3E-06 55.6 3.3 27 385-411 37-65 (525)
398 1yrb_A ATP(GTP)binding protein 91.6 0.14 4.9E-06 47.9 4.4 33 387-419 14-48 (262)
399 2gj8_A MNME, tRNA modification 91.6 0.082 2.8E-06 46.5 2.6 23 388-410 5-27 (172)
400 2bbs_A Cystic fibrosis transme 91.5 0.07 2.4E-06 52.2 2.2 27 385-411 62-88 (290)
401 2atv_A RERG, RAS-like estrogen 91.5 0.095 3.3E-06 46.8 3.0 24 387-410 28-51 (196)
402 1oxx_K GLCV, glucose, ABC tran 91.5 0.054 1.8E-06 54.5 1.4 25 387-411 31-55 (353)
403 3fmp_B ATP-dependent RNA helic 91.5 0.21 7.3E-06 51.3 6.0 52 353-404 90-148 (479)
404 2zuo_A MVP, major vault protei 91.5 19 0.00066 39.7 21.2 15 156-170 687-701 (861)
405 2pjz_A Hypothetical protein ST 91.5 0.073 2.5E-06 51.2 2.3 25 387-411 30-54 (263)
406 2cxx_A Probable GTP-binding pr 91.5 0.08 2.7E-06 46.5 2.4 22 389-410 3-24 (190)
407 1x3s_A RAS-related protein RAB 91.5 0.097 3.3E-06 46.2 2.9 24 388-411 16-39 (195)
408 1dek_A Deoxynucleoside monopho 91.4 0.1 3.5E-06 49.7 3.2 29 390-418 4-32 (241)
409 1q57_A DNA primase/helicase; d 91.4 0.094 3.2E-06 54.9 3.2 34 386-419 241-278 (503)
410 3dz8_A RAS-related protein RAB 91.4 0.12 4.1E-06 45.9 3.5 23 389-411 25-47 (191)
411 3c5c_A RAS-like protein 12; GD 91.4 0.099 3.4E-06 46.5 3.0 24 388-411 22-45 (187)
412 2qm8_A GTPase/ATPase; G protei 91.4 0.16 5.4E-06 50.6 4.7 27 385-411 53-79 (337)
413 1m2o_B GTP-binding protein SAR 91.4 0.092 3.1E-06 46.9 2.7 23 388-410 24-46 (190)
414 2iwr_A Centaurin gamma 1; ANK 91.4 0.075 2.6E-06 46.4 2.0 24 388-411 8-31 (178)
415 2bov_A RAla, RAS-related prote 91.3 0.1 3.4E-06 46.6 2.9 24 388-411 15-38 (206)
416 2fg5_A RAB-22B, RAS-related pr 91.3 0.097 3.3E-06 46.6 2.8 24 388-411 24-47 (192)
417 1zd9_A ADP-ribosylation factor 91.3 0.1 3.5E-06 46.3 2.9 24 388-411 23-46 (188)
418 3reg_A RHO-like small GTPase; 91.3 0.1 3.5E-06 46.4 2.9 24 388-411 24-47 (194)
419 3ice_A Transcription terminati 91.3 0.11 3.6E-06 53.3 3.3 27 385-411 172-198 (422)
420 1f2t_A RAD50 ABC-ATPase; DNA d 91.3 0.1 3.5E-06 45.6 2.8 23 389-411 25-47 (149)
421 3ihw_A Centg3; RAS, centaurin, 91.3 0.1 3.5E-06 46.4 2.9 23 389-411 22-44 (184)
422 2a5j_A RAS-related protein RAB 91.3 0.1 3.5E-06 46.3 2.9 22 389-410 23-44 (191)
423 1z06_A RAS-related protein RAB 91.3 0.1 3.6E-06 46.1 3.0 23 388-410 21-43 (189)
424 1j8m_F SRP54, signal recogniti 91.3 0.09 3.1E-06 51.5 2.7 32 387-418 98-132 (297)
425 1svi_A GTP-binding protein YSX 91.3 0.1 3.4E-06 46.3 2.8 24 387-410 23-46 (195)
426 3t5g_A GTP-binding protein RHE 91.2 0.1 3.4E-06 45.7 2.7 23 388-410 7-29 (181)
427 2ffh_A Protein (FFH); SRP54, s 91.2 0.1 3.6E-06 53.8 3.3 26 386-411 97-122 (425)
428 2p5s_A RAS and EF-hand domain 91.2 0.1 3.6E-06 46.7 2.9 24 388-411 29-52 (199)
429 1zbd_A Rabphilin-3A; G protein 91.2 0.099 3.4E-06 46.8 2.7 24 388-411 9-32 (203)
430 2vp4_A Deoxynucleoside kinase; 91.2 0.085 2.9E-06 49.1 2.4 23 388-410 21-43 (230)
431 3fht_A ATP-dependent RNA helic 91.2 0.31 1.1E-05 48.3 6.7 58 348-405 18-82 (412)
432 2a5y_B CED-4; apoptosis; HET: 91.2 0.23 7.8E-06 52.5 5.9 23 387-409 152-174 (549)
433 1vg8_A RAS-related protein RAB 91.1 0.11 3.7E-06 46.5 3.0 25 387-411 8-32 (207)
434 3hjn_A DTMP kinase, thymidylat 91.1 0.2 6.9E-06 45.8 4.8 32 390-421 3-37 (197)
435 3ch4_B Pmkase, phosphomevalona 91.0 0.23 7.9E-06 46.0 5.0 41 385-428 9-50 (202)
436 3cph_A RAS-related protein SEC 91.0 0.11 3.8E-06 46.6 2.9 23 388-410 21-43 (213)
437 2bcg_Y Protein YP2, GTP-bindin 90.9 0.11 3.7E-06 46.7 2.7 23 388-410 9-31 (206)
438 1ksh_A ARF-like protein 2; sma 90.9 0.1 3.6E-06 45.8 2.6 24 387-410 18-41 (186)
439 3pey_A ATP-dependent RNA helic 90.9 0.52 1.8E-05 46.2 8.0 23 386-408 43-65 (395)
440 3pqc_A Probable GTP-binding pr 90.8 0.12 4E-06 45.5 2.9 23 388-410 24-46 (195)
441 3oes_A GTPase rhebl1; small GT 90.8 0.11 3.8E-06 46.6 2.7 24 388-411 25-48 (201)
442 1gwn_A RHO-related GTP-binding 90.8 0.11 3.8E-06 47.2 2.7 24 388-411 29-52 (205)
443 1pui_A ENGB, probable GTP-bind 90.7 0.068 2.3E-06 48.1 1.2 24 387-410 26-49 (210)
444 2fu5_C RAS-related protein RAB 90.7 0.074 2.5E-06 46.6 1.3 23 388-410 9-31 (183)
445 1xx6_A Thymidine kinase; NESG, 90.6 0.18 6.3E-06 46.1 4.0 32 388-419 9-43 (191)
446 2fh5_B SR-beta, signal recogni 90.6 0.13 4.3E-06 46.6 2.9 24 388-411 8-31 (214)
447 2atx_A Small GTP binding prote 90.6 0.12 4.2E-06 45.8 2.8 24 388-411 19-42 (194)
448 1moz_A ARL1, ADP-ribosylation 90.6 0.077 2.6E-06 46.4 1.4 23 387-409 18-40 (183)
449 2gf0_A GTP-binding protein DI- 90.6 0.13 4.3E-06 45.7 2.8 23 388-410 9-31 (199)
450 2ew1_A RAS-related protein RAB 90.6 0.12 4.1E-06 46.9 2.7 24 388-411 27-50 (201)
451 1qde_A EIF4A, translation init 90.5 0.18 6E-06 46.1 3.8 57 354-410 13-75 (224)
452 3llm_A ATP-dependent RNA helic 90.5 0.15 5.1E-06 47.5 3.3 21 388-408 77-97 (235)
453 1fzq_A ADP-ribosylation factor 90.5 0.11 3.9E-06 45.9 2.4 23 388-410 17-39 (181)
454 2qag_B Septin-6, protein NEDD5 90.5 0.099 3.4E-06 54.0 2.2 21 390-410 45-65 (427)
455 4bas_A ADP-ribosylation factor 90.4 0.12 3.9E-06 45.9 2.4 25 387-411 17-41 (199)
456 2q3h_A RAS homolog gene family 90.4 0.13 4.5E-06 45.9 2.7 23 388-410 21-43 (201)
457 3qks_A DNA double-strand break 90.3 0.13 4.6E-06 47.1 2.8 25 389-413 25-49 (203)
458 1zj6_A ADP-ribosylation factor 90.3 0.13 4.3E-06 45.5 2.6 24 387-410 16-39 (187)
459 1xti_A Probable ATP-dependent 90.3 0.37 1.2E-05 47.5 6.2 23 388-410 46-68 (391)
460 3nh6_A ATP-binding cassette SU 90.3 0.078 2.7E-06 52.3 1.2 27 385-411 78-104 (306)
461 2fv8_A H6, RHO-related GTP-bin 90.3 0.14 4.7E-06 46.3 2.8 23 388-410 26-48 (207)
462 2o52_A RAS-related protein RAB 90.2 0.13 4.4E-06 46.3 2.6 22 388-409 26-47 (200)
463 3tui_C Methionine import ATP-b 90.2 0.15 5.3E-06 51.5 3.3 27 385-411 52-78 (366)
464 2c61_A A-type ATP synthase non 90.1 0.19 6.4E-06 52.5 4.0 26 388-413 153-178 (469)
465 2b6h_A ADP-ribosylation factor 90.1 0.13 4.3E-06 46.1 2.4 22 388-409 30-51 (192)
466 2f7s_A C25KG, RAS-related prot 90.0 0.15 5E-06 46.2 2.8 22 389-410 27-48 (217)
467 2hup_A RAS-related protein RAB 90.0 0.15 5.1E-06 45.9 2.8 23 388-410 30-52 (201)
468 3lxx_A GTPase IMAP family memb 90.0 0.15 5E-06 47.5 2.8 25 387-411 29-53 (239)
469 2gco_A H9, RHO-related GTP-bin 89.9 0.15 5.1E-06 45.8 2.7 23 389-411 27-49 (201)
470 1f6b_A SAR1; gtpases, N-termin 89.9 0.11 3.9E-06 46.7 1.9 22 388-409 26-47 (198)
471 2il1_A RAB12; G-protein, GDP, 89.9 0.14 4.9E-06 45.6 2.6 22 389-410 28-49 (192)
472 2p67_A LAO/AO transport system 89.9 0.24 8.2E-06 49.2 4.5 27 385-411 54-80 (341)
473 2z0m_A 337AA long hypothetical 89.9 0.23 7.9E-06 47.7 4.3 32 388-419 32-63 (337)
474 2j1l_A RHO-related GTP-binding 89.9 0.14 4.9E-06 46.5 2.6 22 388-409 35-56 (214)
475 2h17_A ADP-ribosylation factor 89.9 0.12 4.3E-06 45.4 2.1 23 388-410 22-44 (181)
476 2j0v_A RAC-like GTP-binding pr 89.7 0.16 5.5E-06 45.8 2.7 24 388-411 10-33 (212)
477 4gzl_A RAS-related C3 botulinu 89.7 0.16 5.5E-06 45.8 2.7 24 388-411 31-54 (204)
478 1w4r_A Thymidine kinase; type 89.6 0.24 8.3E-06 45.6 3.9 32 388-419 21-55 (195)
479 2h57_A ADP-ribosylation factor 89.6 0.13 4.3E-06 45.6 1.9 24 388-411 22-45 (190)
480 1sky_E F1-ATPase, F1-ATP synth 89.5 0.17 5.8E-06 52.8 3.1 25 388-412 152-176 (473)
481 3cpj_B GTP-binding protein YPT 89.5 0.18 6.2E-06 46.1 3.0 24 388-411 14-37 (223)
482 3cbq_A GTP-binding protein REM 89.4 0.14 4.7E-06 46.1 2.0 22 388-409 24-45 (195)
483 3lfu_A DNA helicase II; SF1 he 89.3 0.19 6.6E-06 53.7 3.4 24 387-410 22-46 (647)
484 3bor_A Human initiation factor 89.3 0.23 8E-06 46.1 3.6 54 353-406 28-86 (237)
485 2rcn_A Probable GTPase ENGC; Y 89.2 0.19 6.6E-06 50.6 3.1 25 388-412 216-240 (358)
486 2qnr_A Septin-2, protein NEDD5 89.2 0.14 4.8E-06 50.0 2.1 22 389-410 20-41 (301)
487 2cjw_A GTP-binding protein GEM 89.1 0.21 7.3E-06 44.7 3.1 22 389-410 8-29 (192)
488 3q3j_B RHO-related GTP-binding 89.1 0.2 6.8E-06 45.7 2.9 24 388-411 28-51 (214)
489 3iby_A Ferrous iron transport 89.1 0.16 5.5E-06 48.4 2.3 23 388-410 2-24 (256)
490 2yc2_C IFT27, small RAB-relate 89.0 0.089 3.1E-06 46.9 0.5 22 389-410 22-43 (208)
491 1ko7_A HPR kinase/phosphatase; 88.9 0.2 6.7E-06 49.6 2.9 24 387-410 144-167 (314)
492 2pl3_A Probable ATP-dependent 88.9 0.77 2.6E-05 42.2 6.9 18 388-405 63-80 (236)
493 3a1s_A Iron(II) transport prot 88.9 0.17 5.9E-06 48.2 2.4 21 389-409 7-27 (258)
494 3euj_A Chromosome partition pr 88.9 0.2 6.9E-06 52.5 3.2 25 388-412 30-54 (483)
495 1e9r_A Conjugal transfer prote 88.9 0.26 8.9E-06 50.2 3.9 31 388-418 54-87 (437)
496 1w1w_A Structural maintenance 88.9 0.27 9.2E-06 50.3 4.0 26 388-413 27-52 (430)
497 2gxq_A Heat resistant RNA depe 88.8 0.25 8.5E-06 44.3 3.3 19 388-406 39-57 (207)
498 2fwr_A DNA repair protein RAD2 88.8 0.39 1.3E-05 49.1 5.2 31 389-419 110-140 (472)
499 1knx_A Probable HPR(Ser) kinas 88.7 0.17 5.9E-06 50.0 2.3 27 387-414 147-173 (312)
500 2qe7_A ATP synthase subunit al 88.7 0.28 9.6E-06 51.5 4.0 29 388-416 163-192 (502)
No 1
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.9e-23 Score=215.45 Aligned_cols=258 Identities=15% Similarity=0.228 Sum_probs=119.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhchHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012671 148 AQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEG 227 (458)
Q Consensus 148 ~~~a~y~D~L~rkr~q~e~e~~~~~~e~~~~~qees~~rqE~~r~~~e~~l~~lr~~~e~e~~~l~~~~~~~k~~~e~~~ 227 (458)
....+++|++.++++.++...+...+++....+.++...++..++.+.+ ++..+.+.. ++++
T Consensus 11 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~-------~~e~ 72 (437)
T 4b4t_L 11 GLGETSGDNHTQQSHEQQPEQPQETEEHHEEEPSRVDPEQEAHNKALNQ-----------FKRKLLEHR-------RYDD 72 (437)
T ss_dssp -------------------------------------------------------------------CH-------HHHH
T ss_pred HhccccccchhhccccchhhhhHHhhhhhhhcchhcchhhHHHHHHHHH-----------HHHHHHHHH-------HHHH
Confidence 3456788999999999888888887776666666666666666655544 222221111 1122
Q ss_pred hHHHHHhhcChhHHHHHHHHHhhhHHHHHhhchhhhhhHHHHHHhhccccceeeee-cccceeeeeeee------ccccc
Q 012671 228 RAHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTV-GGATALAAGIYT------TREGA 300 (458)
Q Consensus 228 r~~~~r~n~D~~le~~~~~a~~~r~~~l~~i~~~~~~lg~gl~~ll~D~dklv~~v-~g~t~Lavgvyt------a~~~~ 300 (458)
+++..+++.. +++....+ .+..+..|++.+..+|.+++.+ |.++.++.. +|.. ..+++.. .+.|.
T Consensus 73 ~~~~~~~~~~-~l~~~~~~----~~~~~~~l~~~~~~vg~~~~~~--~~~~~iv~~~~g~~-~~v~~~~~~~~~~l~~g~ 144 (437)
T 4b4t_L 73 QLKQRRQNIR-DLEKLYDK----TENDIKALQSIGQLIGEVMKEL--SEEKYIVKASSGPR-YIVGVRNSVDRSKLKKGV 144 (437)
T ss_dssp HHHHHHHHHH-HHHHHHHH----HHHHHHHHHSCCEEEEEEEECS--SSSCEEEEETTSCE-EEECBCSSSCTTSCCTTC
T ss_pred HHHHHHHHHH-HHHHHHHH----HHHHHHHhccCCceeeeheeee--cCCcEEEEECCCCE-EEEecccccCHhhcCCCc
Confidence 2222222211 12222222 2233778888888888877654 444444433 3211 1111111 11222
Q ss_pred ccchhHHHHHhCCCcchhhcccCCCCcccchhhhhHHHhhhcccCCCCCCCCCCCCCccccCChHHHHHHHHHHHHH-Hh
Q 012671 301 RVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKAT-AN 379 (458)
Q Consensus 301 ~v~~~~~e~~Lg~p~lvRe~sr~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~dvi~~~~l~~~l~~l~~~~-~~ 379 (458)
+|.. .+..+.+...+....+.++.+ -.....+...|+||+|.++.+..|...+.+. .+
T Consensus 145 ~v~~----------------~~~~~~~~~~l~~~~d~~~~~-----~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~ 203 (437)
T 4b4t_L 145 RVTL----------------DITTLTIMRILPRETDPLVYN-----MTSFEQGEITFDGIGGLTEQIRELREVIELPLKN 203 (437)
T ss_dssp EEEE----------------CSSSCSEEEECCCCSCCCCSS-----CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHC
T ss_pred eeeE----------------cccchhHHHhcCcccCchhhe-----eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhC
Confidence 2211 111111111111111111000 0111356779999999999999888877763 22
Q ss_pred ----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHhhhcCCce
Q 012671 380 ----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLMHFYASAT 455 (458)
Q Consensus 380 ----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~i 455 (458)
...+..|++|||||||||||||++|++||+++|.+|+.++ +++++++|+|++.++ +..+|..++.++|||
T Consensus 204 p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~---~s~l~sk~~Gese~~---ir~~F~~A~~~~P~I 277 (437)
T 4b4t_L 204 PEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP---ASGIVDKYIGESARI---IREMFAYAKEHEPCI 277 (437)
T ss_dssp HHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE---GGGTCCSSSSHHHHH---HHHHHHHHHHSCSEE
T ss_pred HHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe---hhhhccccchHHHHH---HHHHHHHHHhcCCce
Confidence 3345688899999999999999999999999999999999 899999999998654 556788899999999
Q ss_pred eeC
Q 012671 456 VYI 458 (458)
Q Consensus 456 ifi 458 (458)
|||
T Consensus 278 ifi 280 (437)
T 4b4t_L 278 IFM 280 (437)
T ss_dssp EEE
T ss_pred eee
Confidence 996
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=8.6e-20 Score=187.91 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=87.8
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHH-Hh----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKAT-AN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRS 426 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~-~~----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~ 426 (458)
.+...|+||.|.++.++.|.+.+.++ .+ ...+..|++|+|||||||||||++|++||+++|.+|+.++ ++++
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~---~s~l 218 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS---GAEL 218 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE---GGGG
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE---hHHh
Confidence 36779999999999999988877763 22 3345688899999999999999999999999999999999 9999
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 427 MRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 427 ~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+++|+|++.++ +..+|..++.++||||||
T Consensus 219 ~sk~vGese~~---vr~lF~~Ar~~aP~IIFi 247 (405)
T 4b4t_J 219 VQKYIGEGSRM---VRELFVMAREHAPSIIFM 247 (405)
T ss_dssp SCSSTTHHHHH---HHHHHHHHHHTCSEEEEE
T ss_pred hccccchHHHH---HHHHHHHHHHhCCceEee
Confidence 99999999665 557788899999999996
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.5e-19 Score=187.06 Aligned_cols=102 Identities=21% Similarity=0.330 Sum_probs=88.2
Q ss_pred CCCCCCCccccCChHHHHHHHHHHHHH-----HhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchh
Q 012671 351 VEAIKNNGDIILHPSLQRRIQHLAKAT-----ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPR 425 (458)
Q Consensus 351 ~~~~~~~~dvi~~~~l~~~l~~l~~~~-----~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se 425 (458)
..+...|+||.|.++.++.|.+.+.+. .+...+..|++|||||||||||||++|++||+++|.+|+.++ +++
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~---~s~ 251 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV---GSE 251 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE---SGG
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE---HHH
Confidence 356789999999999999888877763 233455678899999999999999999999999999999999 899
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 426 SMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 426 ~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
++++|+|++.++ +..+|..++.++||||||
T Consensus 252 l~sk~vGesek~---ir~lF~~Ar~~aP~IIfi 281 (437)
T 4b4t_I 252 LIQKYLGDGPRL---CRQIFKVAGENAPSIVFI 281 (437)
T ss_dssp GCCSSSSHHHHH---HHHHHHHHHHTCSEEEEE
T ss_pred hhhccCchHHHH---HHHHHHHHHhcCCcEEEE
Confidence 999999999665 456778899999999997
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=8.5e-19 Score=182.35 Aligned_cols=102 Identities=22% Similarity=0.291 Sum_probs=87.3
Q ss_pred CCCCCCCccccCChHHHHHHHHHHHHH-----HhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchh
Q 012671 351 VEAIKNNGDIILHPSLQRRIQHLAKAT-----ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPR 425 (458)
Q Consensus 351 ~~~~~~~~dvi~~~~l~~~l~~l~~~~-----~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se 425 (458)
..+...|+||.|.++.++.|...+.+. .+...+..|++|+|||||||||||++|++||+++|.+|+.++ +++
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~---~~~ 241 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN---GSE 241 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE---GGG
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe---cch
Confidence 346779999999999999887776652 233445688999999999999999999999999999999999 999
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 426 SMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 426 ~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
++++|+|++.+. +..+|..++.++||||||
T Consensus 242 l~~~~~Ge~e~~---ir~lF~~A~~~aP~Iifi 271 (428)
T 4b4t_K 242 FVHKYLGEGPRM---VRDVFRLARENAPSIIFI 271 (428)
T ss_dssp TCCSSCSHHHHH---HHHHHHHHHHTCSEEEEE
T ss_pred hhccccchhHHH---HHHHHHHHHHcCCCeeec
Confidence 999999998654 556788899999999996
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.7e-18 Score=177.01 Aligned_cols=102 Identities=21% Similarity=0.259 Sum_probs=87.5
Q ss_pred CCCCCCCccccCChHHHHHHHHHHHHH-----HhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchh
Q 012671 351 VEAIKNNGDIILHPSLQRRIQHLAKAT-----ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPR 425 (458)
Q Consensus 351 ~~~~~~~~dvi~~~~l~~~l~~l~~~~-----~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se 425 (458)
..+...|+||.|.++.++.|...+.+. .+.+.+..|++|||||||||||||++|++||+++|.+|+.++ +++
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~---~s~ 250 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA---APQ 250 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE---GGG
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe---hhh
Confidence 357779999999999999887766552 223445688899999999999999999999999999999999 999
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 426 SMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 426 ~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
++++|+|++.++ +..+|..++.++||||||
T Consensus 251 l~~~~vGese~~---ir~lF~~A~~~aP~Iifi 280 (434)
T 4b4t_M 251 LVQMYIGEGAKL---VRDAFALAKEKAPTIIFI 280 (434)
T ss_dssp GCSSCSSHHHHH---HHHHHHHHHHHCSEEEEE
T ss_pred hhhcccchHHHH---HHHHHHHHHhcCCeEEee
Confidence 999999998654 557788899999999996
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.2e-17 Score=174.27 Aligned_cols=101 Identities=17% Similarity=0.312 Sum_probs=87.2
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHH-H----hhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKAT-A----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRS 426 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~-~----~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~ 426 (458)
.+...|+||.|.++.++.|.+.+.+. . +...+..|++|||||||||||||++|++||+++|.+|+.++ ++++
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs---~s~L 279 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI---GSEL 279 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE---GGGG
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE---hHHh
Confidence 46789999999999999888776652 2 23345688999999999999999999999999999999999 9999
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 427 MRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 427 ~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+++|+|++.++ +..+|..++.++||||||
T Consensus 280 ~sk~vGesek~---ir~lF~~Ar~~aP~IIfi 308 (467)
T 4b4t_H 280 VQKYVGEGARM---VRELFEMARTKKACIIFF 308 (467)
T ss_dssp CCCSSSHHHHH---HHHHHHHHHHTCSEEEEE
T ss_pred hcccCCHHHHH---HHHHHHHHHhcCCceEee
Confidence 99999998765 457788899999999996
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.55 E-value=2.6e-15 Score=166.71 Aligned_cols=101 Identities=23% Similarity=0.324 Sum_probs=86.8
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHH-----hhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATA-----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRS 426 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~-----~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~ 426 (458)
.+...|++|.|.++.++.|..++.+.. +.+.+..|++++|||||||||||++|++||.+++.+|+.++ ++++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~---~~~l 547 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK---GPEL 547 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC---HHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEec---cchh
Confidence 456789999999999998887776532 12334578899999999999999999999999999999998 9999
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 427 MRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 427 ~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+++|+|++.+ .+..+|+.++.++||||||
T Consensus 548 ~s~~vGese~---~vr~lF~~Ar~~~P~Iifi 576 (806)
T 3cf2_A 548 LTMWFGESEA---NVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp HTTTCSSCHH---HHHHHHHHHHTTCSEEEEC
T ss_pred hccccchHHH---HHHHHHHHHHHcCCceeec
Confidence 9999999865 4567888999999999997
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.53 E-value=8.3e-15 Score=162.71 Aligned_cols=101 Identities=27% Similarity=0.355 Sum_probs=86.4
Q ss_pred CCCCCCccccCChHHHHHHHHHHHH-HHh----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKA-TAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRS 426 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~-~~~----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~ 426 (458)
.+..+|+||.|.++.+..|..++.+ ..+ ...+..|+++||||||||||||+||++||.++|.+++.++ ++++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~---~~~l 274 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN---GPEI 274 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE---HHHH
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE---hHHh
Confidence 4567899999999999988887765 233 2334578999999999999999999999999999999998 9999
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 427 MRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 427 ~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+++|+|++.+. +..+|..++.++||||||
T Consensus 275 ~sk~~gese~~---lr~lF~~A~~~~PsIIfI 303 (806)
T 3cf2_A 275 MSKLAGESESN---LRKAFEEAEKNAPAIIFI 303 (806)
T ss_dssp HSSCTTHHHHH---HHHHHHHHTTSCSEEEEE
T ss_pred hcccchHHHHH---HHHHHHHHHHcCCeEEEE
Confidence 99999988665 456788899999999997
No 9
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.47 E-value=9.1e-14 Score=138.92 Aligned_cols=101 Identities=17% Similarity=0.279 Sum_probs=83.7
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHh----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
.+...|++|+|+...++.|..++.+... ......|++++|||||||||||++|++||.+++.+|+.++ ++++.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~---~~~l~ 88 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS---SSDLV 88 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE---HHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc---hHHHh
Confidence 3566899999999999988877765432 1234567789999999999999999999999999999998 88999
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.+|+|+.... +..+|..++...|+||||
T Consensus 89 ~~~~g~~~~~---~~~~f~~a~~~~~~vl~i 116 (322)
T 3eie_A 89 SKWMGESEKL---VKQLFAMARENKPSIIFI 116 (322)
T ss_dssp TTTGGGHHHH---HHHHHHHHHHTSSEEEEE
T ss_pred hcccchHHHH---HHHHHHHHHhcCCeEEEe
Confidence 9999987554 446777888899999996
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.45 E-value=1.8e-13 Score=135.59 Aligned_cols=100 Identities=23% Similarity=0.340 Sum_probs=82.5
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHH-----hhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATA-----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~-----~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
+...|++|+|.+..++.|..++.+.. ....+..+++++|||||||||||++|++||..++.+++.++ +++++
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~---~~~l~ 86 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK---GPELL 86 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC---HHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE---hHHHH
Confidence 56689999999999998887776531 22233467789999999999999999999999999999888 88899
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
++|+|+.... +..+|..+....||||||
T Consensus 87 ~~~~g~~~~~---~~~~f~~a~~~~p~il~i 114 (301)
T 3cf0_A 87 TMWFGESEAN---VREIFDKARQAAPCVLFF 114 (301)
T ss_dssp HHHHTTCTTH---HHHHHHHHHHTCSEEEEE
T ss_pred hhhcCchHHH---HHHHHHHHHhcCCeEEEE
Confidence 9999977544 456777888889999986
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=138.68 Aligned_cols=100 Identities=17% Similarity=0.303 Sum_probs=81.4
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHH-hhh---hhcCCCcceeeecCCCCChHHHHHHHHHHh-Ccceeeeccccchhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATA-NTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKS-EEMLHLLVHRLLPRSM 427 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~-~~~---~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~-g~~~~~~~~~~~se~~ 427 (458)
+...|+||+|.+++++.|...+.+.. +.. ....|++++|||||||||||++|++||.++ +.+|+.++ +++++
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~---~~~l~ 83 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS---SSDLV 83 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE---CCSSC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE---hHHHH
Confidence 55689999999999998887776532 222 224677999999999999999999999999 88998888 78888
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.+|+|+..+. +..+|..++...|+||||
T Consensus 84 ~~~~g~~~~~---~~~lf~~a~~~~~~vl~i 111 (322)
T 1xwi_A 84 SKWLGESEKL---VKNLFQLARENKPSIIFI 111 (322)
T ss_dssp CSSCCSCHHH---HHHHHHHHHHTSSEEEEE
T ss_pred hhhhhHHHHH---HHHHHHHHHhcCCcEEEe
Confidence 8999977554 446677788899999996
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.40 E-value=3e-13 Score=137.36 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=78.4
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHH-h---hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATA-N---TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~-~---~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
+...|++|+|+.+.++.|...+.+.. + ......|+++||||||||||||++|++||.+++.+|+.++ +++++.
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~---~~~l~~ 122 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS---SSDLVS 122 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE---HHHHHS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEee---HHHHhh
Confidence 55689999999999998887765432 1 2223467789999999999999999999999999999988 888889
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+|+|+.... +..+|..++...|+||||
T Consensus 123 ~~~g~~~~~---~~~~f~~a~~~~~~vl~i 149 (355)
T 2qp9_X 123 KWMGESEKL---VKQLFAMARENKPSIIFI 149 (355)
T ss_dssp CC---CHHH---HHHHHHHHHHTSSEEEEE
T ss_pred hhcchHHHH---HHHHHHHHHHcCCeEEEE
Confidence 999977554 445677788889999996
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.39 E-value=7.3e-13 Score=126.94 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=77.3
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhh----hcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhh
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYL 430 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~----~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~ 430 (458)
..|++++|.+..++.+..++....+... +..+++++|||||||||||++|++||..++.+++.+. ++++...+
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~---~~~~~~~~ 79 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMA---GAEFVEVI 79 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEE---TTTTSSSS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEec---hHHHHhhc
Confidence 4799999999999999888776443222 2356789999999999999999999999999999988 66666777
Q ss_pred hhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 431 IGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 431 ~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.|..... +..+|..+....|+||||
T Consensus 80 ~~~~~~~---~~~~~~~a~~~~~~vl~i 104 (262)
T 2qz4_A 80 GGLGAAR---VRSLFKEARARAPCIVYI 104 (262)
T ss_dssp TTHHHHH---HHHHHHHHHHTCSEEEEE
T ss_pred cChhHHH---HHHHHHHHHhcCCeEEEE
Confidence 7765433 445677777788999986
No 14
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.37 E-value=7e-13 Score=138.65 Aligned_cols=100 Identities=17% Similarity=0.302 Sum_probs=72.6
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHH-hh---hhhcCCCcceeeecCCCCChHHHHHHHHHHh-Ccceeeeccccchhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATA-NT---KIHQAPFRNMLFYGPPGTGKTMVAREIARKS-EEMLHLLVHRLLPRSM 427 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~-~~---~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~-g~~~~~~~~~~~se~~ 427 (458)
+...|+||+|+..++..|...+.+.. +. .....|++++|||||||||||++|++||.++ +.+|+.++ +++++
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~---~~~l~ 205 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS---SSDLV 205 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC---CC---
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe---HHHHH
Confidence 55689999999999988877665431 11 1224677999999999999999999999999 88998888 78888
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.+|+|+.... +..+|..++...|+||||
T Consensus 206 ~~~~g~~~~~---~~~~f~~a~~~~~~vl~i 233 (444)
T 2zan_A 206 SKWLGESEKL---VKNLFQLARENKPSIIFI 233 (444)
T ss_dssp ------CCCT---HHHHHHHHHHSCSEEEEE
T ss_pred hhhcchHHHH---HHHHHHHHHHcCCeEEEE
Confidence 9999987554 445677788889999996
No 15
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.36 E-value=1.5e-12 Score=137.34 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=82.9
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhh----hhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~----~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
+...|+||+|.++.+..+..+.....+. ..+..+++++|||||||||||++|++||..++.+|+.++ ++++++
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is---~~~~~~ 87 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS---GSDFVE 87 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE---GGGTTT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC---HHHHHH
Confidence 4568999999999999888887764432 223456789999999999999999999999999999998 788888
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.|+|..... +..+|..+....||||||
T Consensus 88 ~~~g~~~~~---~r~lf~~A~~~~p~ILfI 114 (476)
T 2ce7_A 88 LFVGVGAAR---VRDLFAQAKAHAPCIVFI 114 (476)
T ss_dssp CCTTHHHHH---HHHHHHHHHHTCSEEEEE
T ss_pred HHhcccHHH---HHHHHHHHHhcCCCEEEE
Confidence 888876543 456788888899999996
No 16
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.35 E-value=1.3e-11 Score=138.75 Aligned_cols=220 Identities=19% Similarity=0.187 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHHHHHHhchHHHhhhHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 012671 154 EDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEE---QIQAQQRLTEKERAEIERETIRVKAMAEAEGRAH 230 (458)
Q Consensus 154 ~D~L~rkr~q~e~e~~~~~~e~~~~~qees~~rqE~~r~~~e~---~l~~lr~~~e~e~~~l~~~~~~~k~~~e~~~r~~ 230 (458)
=|+++|+.++.+.+...+.++. +..+..|++.++++... ++.+++.+|+.++..+......+..+.+++..+.
T Consensus 403 l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (854)
T 1qvr_A 403 IDALERKKLQLEIEREALKKEK----DPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIE 478 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCS----SHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3678888888888888888774 33455566666666554 7888999999999999999999999988888888
Q ss_pred HHHhhcChhHHHHHHHHHhhhHHHHHhhchhhhhhHHHHHHhhccccceeeeecccceeeeeeeecccccccchhHHHHH
Q 012671 231 EAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRI 310 (458)
Q Consensus 231 ~~r~n~D~~le~~~~~a~~~r~~~l~~i~~~~~~lg~gl~~ll~D~dklv~~v~g~t~Lavgvyta~~~~~v~~~~~e~~ 310 (458)
.+.++.|+ .++.+.++..++.+......+... +....++..... ...+...+.++
T Consensus 479 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~--------------~~~l~~~v~~~ 533 (854)
T 1qvr_A 479 LAERQYDL------NRAAELRYGELPKLEAEVEALSEK-----LRGARFVRLEVT--------------EEDIAEIVSRW 533 (854)
T ss_dssp HHTTTTCH------HHHHHHHTTHHHHHHHHHHHHHHH-----SSSCSSCCSEEC--------------HHHHHHHHHTT
T ss_pred HHHhcccH------HHHHHHhhhhhHHHHHHHHHHHhh-----hcccccccCCcC--------------HHHHHHHHHHH
Confidence 88888888 455666666666654433222110 100011111110 11122223333
Q ss_pred hCCCcchhhcccCCCCcccchhhhhHHHhhhcccCCCCCCCCCCCCCccccCChHHHHHHHHHHHHHHh-hhhhcCCCcc
Q 012671 311 LGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATAN-TKIHQAPFRN 389 (458)
Q Consensus 311 Lg~p~lvRe~sr~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~dvi~~~~l~~~l~~l~~~~~~-~~~~~~p~rn 389 (458)
+|.|...-..+. ...+...... -+++|+|+......+...+..... ......|..+
T Consensus 534 ~~ip~~~~~~~~-----~~~l~~l~~~------------------l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~ 590 (854)
T 1qvr_A 534 TGIPVSKLLEGE-----REKLLRLEEE------------------LHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGS 590 (854)
T ss_dssp SSCHHHHTTCCH-----HHHHHSHHHH------------------HHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEE
T ss_pred hCCChHhhcHHH-----HHHHHHHHHH------------------HhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceE
Confidence 332211000000 0000000011 134588998877766655543321 1222345568
Q ss_pred eeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhh
Q 012671 390 MLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~ 428 (458)
+||+||||||||++|++|+..+ +.+|+.+. ++++..
T Consensus 591 vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~---~~~~~~ 629 (854)
T 1qvr_A 591 FLFLGPTGVGKTELAKTLAATLFDTEEAMIRID---MTEYME 629 (854)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC---TTTCCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEe---chhccc
Confidence 9999999999999999999999 67777776 554443
No 17
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.33 E-value=1.5e-12 Score=136.43 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=80.3
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC--cceeeeccccchhhhhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE--EMLHLLVHRLLPRSMRY 429 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g--~~~~~~~~~~~se~~~~ 429 (458)
.+...|++++|+++..+.+..++.... .+..|++++|||||||||||++|++||..+| .+|+.++ ++++..+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~---~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~---~~~~~~~ 104 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIK---SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV---GSEVYST 104 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHH---TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE---GGGGCCS
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHH---hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe---HHHHHHH
Confidence 355678999999999888877665433 3445678999999999999999999999999 8888888 8889999
Q ss_pred hhhhhhhhhhhhHHHHHHh---hhcCCceeeC
Q 012671 430 LIGRRNQRKACCFLLTRLM---HFYASATVYI 458 (458)
Q Consensus 430 ~~ge~~~~~~~i~~lf~~a---~~~~p~iifi 458 (458)
|+|+... +..+|+.+ +...||||||
T Consensus 105 ~~~~~~~----~~~~f~~a~~~~~~~~~il~i 132 (456)
T 2c9o_A 105 EIKKTEV----LMENFRRAIGLRIKETKEVYE 132 (456)
T ss_dssp SSCHHHH----HHHHHHHTEEEEEEEEEEEEE
T ss_pred hhhhhHH----HHHHHHHHHhhhhcCCcEEEE
Confidence 9998754 34577777 8889999996
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=3.7e-12 Score=123.94 Aligned_cols=100 Identities=23% Similarity=0.354 Sum_probs=79.3
Q ss_pred CCCCCccccCChHHHHHHHHHHHHH-Hh----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKAT-AN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~-~~----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
+...|++++|.+...+.|..++... .+ ...+..+++++|||||||||||++|++||..++.+++.+. ++++.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~---~~~~~ 88 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVV---GSELV 88 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEE---GGGGC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe---hHHHH
Confidence 5568999999999988887666542 11 1222366789999999999999999999999999999988 78888
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
..+.|.... .+..+|..+....|+||||
T Consensus 89 ~~~~~~~~~---~~~~~~~~~~~~~~~vl~i 116 (285)
T 3h4m_A 89 KKFIGEGAS---LVKDIFKLAKEKAPSIIFI 116 (285)
T ss_dssp CCSTTHHHH---HHHHHHHHHHHTCSEEEEE
T ss_pred HhccchHHH---HHHHHHHHHHHcCCeEEEE
Confidence 888887644 3445677788889999986
No 19
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.31 E-value=3e-12 Score=123.12 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=77.9
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhh----hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~----~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
+...|++++|.+..++.+..++....+.. .+..+++++|||||||||||++|++|+..++.+++.+. ++++.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~---~~~~~~ 83 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS---GSDFVE 83 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC---SCSSTT
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEe---HHHHHH
Confidence 45689999999999998888776644322 22355779999999999999999999999999998887 666777
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.+.|.... .+..+|..+....|++|||
T Consensus 84 ~~~~~~~~---~~~~~~~~a~~~~~~il~i 110 (257)
T 1lv7_A 84 MFVGVGAS---RVRDMFEQAKKAAPCIIFI 110 (257)
T ss_dssp SCCCCCHH---HHHHHHHHHHTTCSEEEEE
T ss_pred HhhhhhHH---HHHHHHHHHHHcCCeeehh
Confidence 77776543 3445677788888999985
No 20
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.31 E-value=2.1e-12 Score=127.65 Aligned_cols=70 Identities=13% Similarity=0.002 Sum_probs=56.2
Q ss_pred hcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhhhhhhhhhhhHHHHHHh----hhcCCceeeC
Q 012671 383 HQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIGRRNQRKACCFLLTRLM----HFYASATVYI 458 (458)
Q Consensus 383 ~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ge~~~~~~~i~~lf~~a----~~~~p~iifi 458 (458)
+..+++++|||||||||||++|++||..+|.+++.++ ++++..+|+|....... .+|..+ +...||||||
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~---~~~l~~~~~g~~~~~i~---~~f~~a~~~~~~~~~~vl~i 105 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS---AGELESGNAGEPAKLIR---QRYREAAEIIRKGNMCCLFI 105 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE---HHHHHCC---HHHHHHH---HHHHHHHHHHTTSSCCCEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe---HHHhhhccCchhHHHHH---HHHHHHHHHHhcCCCeEEEE
Confidence 4466789999999999999999999999999999998 89999999997755443 455555 6779999986
No 21
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.31 E-value=1.7e-12 Score=125.42 Aligned_cols=100 Identities=17% Similarity=0.235 Sum_probs=77.6
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhh----hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~----~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
+...|++++|++...+.+..++....+.. .+..+++++|||||||||||++|++||..++.+++.+. ++.+..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~---~~~~~~ 82 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG---GSSFIE 82 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC---SCTTTT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEec---hHHHHH
Confidence 45679999999999888887776543322 23456789999999999999999999999999998887 677777
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.+.|......+ .+|..+....|+||||
T Consensus 83 ~~~~~~~~~~~---~~~~~a~~~~~~vl~i 109 (268)
T 2r62_A 83 MFVGLGASRVR---DLFETAKKQAPSIIFI 109 (268)
T ss_dssp SCSSSCSSSSS---TTHHHHHHSCSCEEEE
T ss_pred hhcchHHHHHH---HHHHHHHhcCCeEEEE
Confidence 77776654433 3556677778999986
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.30 E-value=3.7e-12 Score=130.45 Aligned_cols=100 Identities=21% Similarity=0.326 Sum_probs=74.6
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhh----hhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~----~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
....|++|+|+......|..++...... .....+.+++|||||||||||++|++||..++.+|+.++ ++++..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~---~~~l~~ 186 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS---AASLTS 186 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC---SCCC--
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEee---HHHhhc
Confidence 4457999999999988887776554321 122356789999999999999999999999999999998 788888
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.|+|.... .+..+|..++...|+||||
T Consensus 187 ~~~g~~~~---~~~~~~~~a~~~~~~il~i 213 (389)
T 3vfd_A 187 KYVGEGEK---LVRALFAVARELQPSIIFI 213 (389)
T ss_dssp -----CHH---HHHHHHHHHHHSSSEEEEE
T ss_pred cccchHHH---HHHHHHHHHHhcCCeEEEE
Confidence 89987654 3556778888899999996
No 23
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.29 E-value=3.3e-12 Score=125.27 Aligned_cols=100 Identities=18% Similarity=0.249 Sum_probs=72.7
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHH-h----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATA-N----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~-~----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
+...|+||.|.+++++.|...+.+.. + ...+..+++|++||||||||||+|+++||..++.+++.+. ++++.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~---g~~l~ 81 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVK---GPELL 81 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEE---TTTTC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEE---cHHHH
Confidence 45689999999999888876544322 2 2233466789999999999999999999999999888887 67777
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
..+.|+..+ .+..+|..++...|||+|+
T Consensus 82 ~~~~~~~~~---~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 82 NMYVGESER---AVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp SSTTHHHHH---HHHHHHHHHHHTCSEEEEE
T ss_pred hhhhhHHHH---HHHHHHHHHHhcCCCeEee
Confidence 788887644 4556777788889999985
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.29 E-value=4.7e-12 Score=128.44 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=80.2
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHH-hhh---hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATA-NTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~-~~~---~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
+...|++++|+....+.|..++.+.. +.. ....+++++|||||||||||++|++||..++.+|+.++ ++++..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~---~~~l~~ 155 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS---ASSLTS 155 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEE---GGGGCC
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEe---hHHhhc
Confidence 45689999999999988887766532 111 12356789999999999999999999999999999988 788888
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.|.|..... +..+|..+....|+||||
T Consensus 156 ~~~g~~~~~---~~~~~~~a~~~~~~vl~i 182 (357)
T 3d8b_A 156 KWVGEGEKM---VRALFAVARCQQPAVIFI 182 (357)
T ss_dssp SSTTHHHHH---HHHHHHHHHHTCSEEEEE
T ss_pred cccchHHHH---HHHHHHHHHhcCCeEEEE
Confidence 888876544 445667778889999996
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.29 E-value=5.4e-12 Score=123.66 Aligned_cols=100 Identities=20% Similarity=0.318 Sum_probs=78.5
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHh-h---hhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATAN-T---KIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~-~---~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
+...|++++|++...+.+...+..... . .....+++++|||||||||||++|++||..++.+|+.++ ++++..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~---~~~l~~ 92 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNIS---AASLTS 92 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE---STTTSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee---HHHHhh
Confidence 556899999999998888776655321 1 112356789999999999999999999999999999888 777788
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.+.|..... +..+|..+....|+||||
T Consensus 93 ~~~~~~~~~---~~~~~~~~~~~~~~vl~i 119 (297)
T 3b9p_A 93 KYVGDGEKL---VRALFAVARHMQPSIIFI 119 (297)
T ss_dssp SSCSCHHHH---HHHHHHHHHHTCSEEEEE
T ss_pred cccchHHHH---HHHHHHHHHHcCCcEEEe
Confidence 888866443 345667777889999986
No 26
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.24 E-value=1.4e-11 Score=130.30 Aligned_cols=99 Identities=27% Similarity=0.363 Sum_probs=80.5
Q ss_pred CCCCccccCChHHHHHHHHHHHHH-H----hhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKAT-A----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~-~----~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
..+|++++|.......|..++... . ....+..+++++|||||||||||++|++|+..++.+|+.++ ++++.+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn---~~~l~~ 276 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN---GPEIMS 276 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE---HHHHHT
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE---chHhhh
Confidence 457999999999888877766542 1 12223467789999999999999999999999999999998 889999
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.|+|+.... +..+|..+....|+||||
T Consensus 277 ~~~g~~~~~---~~~~f~~A~~~~p~iLfL 303 (489)
T 3hu3_A 277 KLAGESESN---LRKAFEEAEKNAPAIIFI 303 (489)
T ss_dssp SCTTHHHHH---HHHHHHHHHHTCSEEEEE
T ss_pred hhcchhHHH---HHHHHHHHHhcCCcEEEe
Confidence 999977543 456778888899999996
No 27
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.22 E-value=1.6e-11 Score=130.16 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=81.2
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhh----hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~----~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
+...|+||+|.++.+..+..+.....+.. .+..+++++|||||||||||+||++||..++.+++.++ ++++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~---g~~~~~ 102 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS---GSDFVE 102 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEE---GGGGTS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe---hhHHHH
Confidence 56789999999999999988887654432 22345678999999999999999999999999999888 677777
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.++|.... .+..+|..++...||||||
T Consensus 103 ~~~g~~~~---~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 103 MFVGVGAA---RVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp SCTTHHHH---HHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhHHH---HHHHHHHHHHhcCCCEEEE
Confidence 88886643 3556778887788999986
No 28
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.15 E-value=9.2e-11 Score=112.49 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=76.4
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhh----hhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~----~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
.+...|+++++.++....+..+.....+. ..+...+++++||||||||||+|+++|+..++..++.+. +..+.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~---~~~~~ 86 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS---GSDFV 86 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE---HHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEee---HHHHH
Confidence 45678999999999998888877654322 122345678999999999999999999999998888877 56666
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
..+.|.... .+..+|+.+....|+++||
T Consensus 87 ~~~~~~~~~---~i~~~~~~~~~~~~~i~~~ 114 (254)
T 1ixz_A 87 EMFVGVGAA---RVRDLFETAKRHAPCIVFI 114 (254)
T ss_dssp HSCTTHHHH---HHHHHHHHHTTSSSEEEEE
T ss_pred HHHhhHHHH---HHHHHHHHHHhcCCeEEEe
Confidence 666665433 3456677777778998875
No 29
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.08 E-value=3.2e-10 Score=110.52 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=75.8
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhh----hhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~----~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~ 428 (458)
+...|+++++.++....+..+.....+. ..+...+++++||||||||||+|+++|+..++..++.+. +..+..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~---~~~~~~ 111 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS---GSDFVE 111 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE---HHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEec---HHHHHH
Confidence 5678999999999999888887654332 122345678999999999999999999999998888877 566666
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 429 YLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 429 ~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.+.|.... .+..+|..+....|+++||
T Consensus 112 ~~~~~~~~---~i~~~~~~~~~~~~~i~~i 138 (278)
T 1iy2_A 112 MFVGVGAA---RVRDLFETAKRHAPCIVFI 138 (278)
T ss_dssp STTTHHHH---HHHHHHHHHHTSCSEEEEE
T ss_pred HHhhHHHH---HHHHHHHHHHhcCCcEEeh
Confidence 66665432 3445677777778998875
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.06 E-value=7.2e-11 Score=132.01 Aligned_cols=101 Identities=23% Similarity=0.337 Sum_probs=81.3
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHh-----hhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhh
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRS 426 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~-----~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~ 426 (458)
.+...|+++++...+++.+..+..+... ...+..++.++|||||||||||++|++||..++.+++.++ ++++
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~---~~~l 547 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK---GPEL 547 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCC---CSSS
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEe---chHh
Confidence 4566899999999998888766543211 1122356789999999999999999999999999998888 8888
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 427 MRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 427 ~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
..+|+|+... .+..+|+.++...||||||
T Consensus 548 ~~~~~g~~~~---~i~~~f~~a~~~~p~vl~i 576 (806)
T 1ypw_A 548 LTMWFGESEA---NVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp TTCCTTTSSH---HHHHHHHHHHHHCSBCCCC
T ss_pred hhhhcCccHH---HHHHHHHHHHhcCCeEEEE
Confidence 8999997754 4557788888999999997
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.03 E-value=3.4e-10 Score=111.20 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=65.3
Q ss_pred cccCChHHHHHHHHHHHHHHhhhhh-------cCCCcceeeecCCCCChHHHHHHHHHHhCc-------ceeeeccccch
Q 012671 359 DIILHPSLQRRIQHLAKATANTKIH-------QAPFRNMLFYGPPGTGKTMVAREIARKSEE-------MLHLLVHRLLP 424 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~~~~~~~-------~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~-------~~~~~~~~~~s 424 (458)
+++|++..++.+..++......... ..+..++|||||||||||++|++||..++. +++.++ .+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~---~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT---RD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC---GG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc---HH
Confidence 5899999999888877765432221 355668999999999999999999999854 566666 77
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 425 RSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 425 e~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
.++..++|...... ..+|.. ..++||||
T Consensus 109 ~l~~~~~g~~~~~~---~~~~~~---~~~~vl~i 136 (309)
T 3syl_A 109 DLVGQYIGHTAPKT---KEVLKR---AMGGVLFI 136 (309)
T ss_dssp GTCCSSTTCHHHHH---HHHHHH---HTTSEEEE
T ss_pred HhhhhcccccHHHH---HHHHHh---cCCCEEEE
Confidence 77788888654332 233333 36778875
No 32
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.01 E-value=6.7e-10 Score=112.42 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=64.5
Q ss_pred ccCChHHHHHHHHHHHHHHh-hhhh------cCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh-hhh
Q 012671 360 IILHPSLQRRIQHLAKATAN-TKIH------QAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR-YLI 431 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~-~~~~------~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~-~~~ 431 (458)
|+|++...+.+...+...+. .... ..++.++|||||||||||++|++||..++.+|+.++ ++++.. .|+
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~---~~~l~~~~~~ 93 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD---ATTLTEAGYV 93 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE---HHHHTTCHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec---hHHhcccccc
Confidence 78999888877665543222 1111 135689999999999999999999999999999988 666664 477
Q ss_pred hhhhhhhhhhHHHHHHh----hhcCCceeeC
Q 012671 432 GRRNQRKACCFLLTRLM----HFYASATVYI 458 (458)
Q Consensus 432 ge~~~~~~~i~~lf~~a----~~~~p~iifi 458 (458)
|.... ..+..++..+ ....|+||||
T Consensus 94 g~~~~--~~~~~~~~~~~~~~~~~~~~vl~l 122 (363)
T 3hws_A 94 GEDVE--NIIQKLLQKCDYDVQKAQRGIVYI 122 (363)
T ss_dssp HHHHT--HHHHHHHHHTTTCHHHHHHCEEEE
T ss_pred cccHH--HHHHHHHHHhhhhHHhcCCcEEEE
Confidence 75421 1222333333 4456788875
No 33
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.98 E-value=4.5e-10 Score=125.59 Aligned_cols=100 Identities=26% Similarity=0.369 Sum_probs=80.4
Q ss_pred CCCCCccccCChHHHHHHHHHHHHH-Hhhh----hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhh
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKAT-ANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSM 427 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~-~~~~----~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~ 427 (458)
...+|++|+|.....+.|..++... .+.. ....++.++|||||||||||+||++||..++.+++.++ +++++
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~---~~~l~ 275 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN---GPEIM 275 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE---HHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE---chHhh
Confidence 4578999999999888877776652 2222 23467789999999999999999999999999998888 78888
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 428 RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 428 ~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
..+.|+.... +..+|..+....|+||||
T Consensus 276 ~~~~g~~~~~---l~~vf~~a~~~~p~il~i 303 (806)
T 1ypw_A 276 SKLAGESESN---LRKAFEEAEKNAPAIIFI 303 (806)
T ss_dssp SSSTTHHHHH---HHHHHHHHHHHCSEEEEE
T ss_pred hhhhhhHHHH---HHHHHHHHHhcCCcEEEe
Confidence 8888877544 446677788889999986
No 34
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.83 E-value=6.6e-09 Score=104.44 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=50.5
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc--ceeeec
Q 012671 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE--MLHLLV 419 (458)
Q Consensus 352 ~~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~--~~~~~~ 419 (458)
.+...|++++|++.....+..+...... +..|++++|||||||||||++|++++..++. +++.+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~---~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIRE---GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT---TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 4555699999999988877766555433 3345689999999999999999999999985 555554
No 35
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.81 E-value=6.9e-09 Score=105.37 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=47.6
Q ss_pred ccCChHHHHHHHHHHHHH-Hhhh---------------------hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 360 IILHPSLQRRIQHLAKAT-ANTK---------------------IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~-~~~~---------------------~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
|+|++.+++.|...+... ...+ ....+..++|||||||||||++|++||..++.+|+.
T Consensus 23 viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 23 VIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 899999988776555211 1111 112345799999999999999999999999999988
Q ss_pred eccccchhhh-hhhhhh
Q 012671 418 LVHRLLPRSM-RYLIGR 433 (458)
Q Consensus 418 ~~~~~~se~~-~~~~ge 433 (458)
+. ++.+. .+|+|.
T Consensus 103 ~~---~~~~~~~~~~g~ 116 (376)
T 1um8_A 103 SD---ATSLTEAGYVGE 116 (376)
T ss_dssp EE---GGGCC-------
T ss_pred ec---chhhhhcCcCCc
Confidence 77 44433 356664
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.81 E-value=6.7e-09 Score=101.37 Aligned_cols=71 Identities=23% Similarity=0.330 Sum_probs=51.5
Q ss_pred cccCChHHHHHHHHHHHHHHhh------hhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh-hhh
Q 012671 359 DIILHPSLQRRIQHLAKATANT------KIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR-YLI 431 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~~~~------~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~-~~~ 431 (458)
+|+|++...+.+...+...+.. .....++.++|||||||||||++|++|+..++.+++.+. ++.+.. +|+
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~---~~~~~~~~~~ 92 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE---ATKFTEVGYV 92 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE---GGGGSSCCSG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEc---chhcccCCcc
Confidence 3889998888776555432110 011245679999999999999999999999999998887 555444 555
Q ss_pred h
Q 012671 432 G 432 (458)
Q Consensus 432 g 432 (458)
|
T Consensus 93 ~ 93 (310)
T 1ofh_A 93 G 93 (310)
T ss_dssp G
T ss_pred C
Confidence 5
No 37
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.80 E-value=7.1e-09 Score=108.13 Aligned_cols=72 Identities=22% Similarity=0.377 Sum_probs=53.6
Q ss_pred cccCChHHHHHHHHHHHHHHh-hhh-----hcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhh-hhh
Q 012671 359 DIILHPSLQRRIQHLAKATAN-TKI-----HQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMR-YLI 431 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~~~-~~~-----~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~-~~~ 431 (458)
+|+|+.++++.+...+...+. ... ...+++|+||+||||||||++|++||..++.+|+.+. ++.+.+ +|+
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~---~~~~~~~g~v 92 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE---ATKFTEVGYV 92 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE---GGGGC----C
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec---chhhccccee
Confidence 489999999987655544321 110 1135789999999999999999999999999999888 677777 588
Q ss_pred hh
Q 012671 432 GR 433 (458)
Q Consensus 432 ge 433 (458)
|.
T Consensus 93 G~ 94 (444)
T 1g41_A 93 GK 94 (444)
T ss_dssp CC
T ss_pred ec
Confidence 84
No 38
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.78 E-value=9.4e-09 Score=107.98 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=58.2
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh----------Ccceeeeccccc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------EEMLHLLVHRLL 423 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~----------g~~~~~~~~~~~ 423 (458)
...|++|||++.....+..++.. ....|+||+||||||||++|++||..+ |.+++.+. +
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r--------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~---~ 244 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD---M 244 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred cCCCCCccCcHHHHHHHHHHHhc--------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee---C
Confidence 44688899998877765544321 234599999999999999999999997 66666655 4
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 424 PRSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 424 se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+ .+|.|+..... ..+|+.+....|+||||
T Consensus 245 ~---~~~~g~~e~~~---~~~~~~~~~~~~~iLfi 273 (468)
T 3pxg_A 245 G---TKYRGEFEDRL---KKVMDEIRQAGNIILFI 273 (468)
T ss_dssp -----------CTTH---HHHHHHHHTCCCCEEEE
T ss_pred C---ccccchHHHHH---HHHHHHHHhcCCeEEEE
Confidence 4 66777654433 34666777788999996
No 39
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.77 E-value=1.4e-08 Score=90.82 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=55.7
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh----------Ccceeeeccccc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------EEMLHLLVHRLL 423 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~----------g~~~~~~~~~~~ 423 (458)
...|+++++.++....+..... .....++||+||||||||+++++++..+ +.+++.+. +
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~--------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 86 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQ--------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD---M 86 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT--------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC---H
T ss_pred hccccccccchHHHHHHHHHHh--------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee---H
Confidence 3468889998876555443321 1335689999999999999999999987 55665555 4
Q ss_pred hhhh--hhhhhhhhhhhhhhHHHHHHh-hhcCCceeeC
Q 012671 424 PRSM--RYLIGRRNQRKACCFLLTRLM-HFYASATVYI 458 (458)
Q Consensus 424 se~~--~~~~ge~~~~~~~i~~lf~~a-~~~~p~iifi 458 (458)
+.+. ..+.|.... .+..++..+ +...|+||||
T Consensus 87 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~vl~i 121 (195)
T 1jbk_A 87 GALVAGAKYRGEFEE---RLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp HHHHTTTCSHHHHHH---HHHHHHHHHHHSTTTEEEEE
T ss_pred HHHhccCCccccHHH---HHHHHHHHHhhcCCCeEEEE
Confidence 4443 233333222 222333322 3445777764
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.76 E-value=1.4e-08 Score=98.20 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=48.8
Q ss_pred cCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhhhhhhhh-hhhhhhHHHHHHhhhcCCceeeC
Q 012671 384 QAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRYLIGRRN-QRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 384 ~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~~~ge~~-~~~~~i~~lf~~a~~~~p~iifi 458 (458)
..++.++|||||||||||++|++||..++.+|+.+. .++ .++|... .....+..+|+.+....|+||||
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~---~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~i 130 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC---SPD---KMIGFSETAKCQAMKKIFDDAYKSQLSCVVV 130 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE---CGG---GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe---CHH---HhcCCchHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 355679999999999999999999999999998886 333 2333211 11123445666666677888875
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.72 E-value=1.7e-08 Score=90.37 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=37.4
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
...|+++++.+.....+..... .....++||+||||||||+++++++..+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~--------~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILS--------RRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT--------SSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccccchhhcchHHHHHHHHHHh--------CCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3468889998875554433221 1335689999999999999999999987
No 42
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.70 E-value=4.1e-08 Score=97.70 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=51.1
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
..|++++|+......+..++.... ....++.++||+||||||||++|++|+..++.+|+.++
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~---~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAK---KRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHH---HTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHHHH---hcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 379999999988887766554432 23456679999999999999999999999999998887
No 43
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.8e-08 Score=107.07 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=50.8
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhh---------hhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeecc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTK---------IHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVH 420 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~---------~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~ 420 (458)
...|++++|++...+.+..++....... .+..+++++|||||||||||++|++||.++|.+++.++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 3478999999988887665554322111 011256799999999999999999999999999988873
No 44
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.66 E-value=3.3e-08 Score=109.68 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=59.0
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh----------Ccceeeeccccc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------EEMLHLLVHRLL 423 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~----------g~~~~~~~~~~~ 423 (458)
...|++++|++...+.+..++. .....|+|||||||||||++|++||..+ +..++.+. +
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~--------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~---~ 244 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLS--------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD---M 244 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHH--------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred hCCCCCccCchHHHHHHHHHHh--------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec---c
Confidence 4578889999887776654432 1234599999999999999999999997 66666655 3
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 424 PRSMRYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 424 se~~~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
..+|.|+...+.. .+|+.+....|+||||
T Consensus 245 ---g~~~~G~~e~~l~---~~~~~~~~~~~~iLfi 273 (758)
T 3pxi_A 245 ---GTKYRGEFEDRLK---KVMDEIRQAGNIILFI 273 (758)
T ss_dssp -----------CTTHH---HHHHHHHTCCCCEEEE
T ss_pred ---cccccchHHHHHH---HHHHHHHhcCCEEEEE
Confidence 4556776655443 4566777789999996
No 45
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.65 E-value=6.4e-08 Score=107.32 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=51.3
Q ss_pred cccCChHHHHHHHHHHHHHHh-hhhhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhhhhhh
Q 012671 359 DIILHPSLQRRIQHLAKATAN-TKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMRYLIG 432 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~~~-~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~~~~g 432 (458)
+|+|++.....+...+..... ......|..++||+||||||||++|++||..+ +.+++.++ ++++++.+.+
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~---~s~~~~~~~~ 566 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID---MSEYMEKHST 566 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE---GGGGCSSCCC
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe---chhccccccc
Confidence 488998887766555544322 12223444589999999999999999999998 45676666 8888876654
No 46
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.63 E-value=8.1e-08 Score=94.61 Aligned_cols=62 Identities=27% Similarity=0.490 Sum_probs=49.1
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
..|++++|++.....+..++.... ....+..++||+||||||||++|++++..++.+++.++
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~---~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~ 70 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAK---ARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS 70 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHH---HHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEEC
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHH---ccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 478899999987777665544322 12345679999999999999999999999999988776
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.62 E-value=1e-07 Score=94.60 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=47.7
Q ss_pred CCCCCcccc-CChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhh
Q 012671 353 AIKNNGDII-LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMR 428 (458)
Q Consensus 353 ~~~~~~dvi-~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~ 428 (458)
+...|++++ ++... ..+..+.....+ ....+.++|||||||||||+++++|+..+ +.+++.++ +.++..
T Consensus 6 ~~~~f~~fv~g~~~~-~a~~~~~~~~~~---~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~---~~~~~~ 78 (324)
T 1l8q_A 6 PKYTLENFIVGEGNR-LAYEVVKEALEN---LGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS---ADDFAQ 78 (324)
T ss_dssp TTCCSSSCCCCTTTH-HHHHHHHHHHHT---TTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE---HHHHHH
T ss_pred CCCCcccCCCCCcHH-HHHHHHHHHHhC---cCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE---HHHHHH
Confidence 456788887 43322 222222222111 12245799999999999999999999998 78888877 566655
Q ss_pred hhhh
Q 012671 429 YLIG 432 (458)
Q Consensus 429 ~~~g 432 (458)
.+.+
T Consensus 79 ~~~~ 82 (324)
T 1l8q_A 79 AMVE 82 (324)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.61 E-value=3.6e-08 Score=103.05 Aligned_cols=59 Identities=29% Similarity=0.452 Sum_probs=46.2
Q ss_pred CCCCccccCChHHH---HHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeecc
Q 012671 354 IKNNGDIILHPSLQ---RRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVH 420 (458)
Q Consensus 354 ~~~~~dvi~~~~l~---~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~ 420 (458)
...|++++|+..+. ..+...+.. ....++|||||||||||++|++|+..++.+|+.++.
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~--------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a 83 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA--------GHLHSMILWGPPGTGKTTLAEVIARYANADVERISA 83 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH--------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEET
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc--------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 45789999999887 344433322 112589999999999999999999999999988773
No 49
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.60 E-value=5.2e-08 Score=107.91 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=49.2
Q ss_pred cccCChHHHHHHHHHHHHHH-hhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchhhhhh
Q 012671 359 DIILHPSLQRRIQHLAKATA-NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPRSMRY 429 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~~-~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se~~~~ 429 (458)
+|+|+++....+...+.... .......|..++||+||||||||++|++||..++.+++.+. ++++++.
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~---~s~~~~~ 527 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFD---MSEYMER 527 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEE---GGGCSSS
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEe---chhhcch
Confidence 47788877776655443322 11122345568999999999999999999999998888777 7776653
No 50
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.57 E-value=1.4e-07 Score=85.41 Aligned_cols=72 Identities=18% Similarity=0.094 Sum_probs=46.3
Q ss_pred CCCccccCC-hHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh----Ccceeeeccccchhhhhh
Q 012671 355 KNNGDIILH-PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----EEMLHLLVHRLLPRSMRY 429 (458)
Q Consensus 355 ~~~~dvi~~-~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~----g~~~~~~~~~~~se~~~~ 429 (458)
..|++++.. +.....+..+..+..+... .+..+++|+||||||||+|+++|++.+ |..++.++ +.+++..
T Consensus 7 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~---~~~~~~~ 81 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLTIRVFVHNFNP--EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD---TKDLIFR 81 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHHHHHHHHSCCG--GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE---HHHHHHH
T ss_pred CccccccCCCHHHHHHHHHHHHHHHhccc--cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE---HHHHHHH
Confidence 467777763 3444455444444333222 224689999999999999999999887 55555555 5555544
Q ss_pred hh
Q 012671 430 LI 431 (458)
Q Consensus 430 ~~ 431 (458)
+.
T Consensus 82 ~~ 83 (180)
T 3ec2_A 82 LK 83 (180)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 51
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.57 E-value=3e-08 Score=87.09 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=37.4
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
++|.......+...+.... ....+|||+||||||||++|++|+..++ +|+.++
T Consensus 6 ~iG~s~~~~~l~~~~~~~~------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~ 58 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAA------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPA 58 (143)
T ss_dssp --CCCHHHHHHHHHHHHHH------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCS
T ss_pred ceeCCHHHHHHHHHHHHHh------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEec
Confidence 6777666555544443221 2245899999999999999999999988 777666
No 52
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.57 E-value=6.4e-08 Score=85.10 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=28.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
..+|||+||||||||++|++|+..+ +.+|+ +.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~ 58 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YR 58 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EE
Confidence 4589999999999999999999987 66777 65
No 53
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.57 E-value=1e-07 Score=94.33 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=48.2
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeecc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVH 420 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~ 420 (458)
+..|++++|+++....+..++. .+.++..+|++||||||||+++++||+.++.+++.++.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~-------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITS-------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHH-------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred CCCHHHHhCcHHHHHHHHHHHH-------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 3578999999988777665544 23344567888999999999999999999999998883
No 54
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.52 E-value=1.4e-07 Score=106.01 Aligned_cols=91 Identities=16% Similarity=0.202 Sum_probs=58.4
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh----------Ccceeeeccccc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------EEMLHLLVHRLL 423 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~----------g~~~~~~~~~~~ 423 (458)
...|++++|.++...++..++. .....|+||+||||||||+++++||..+ +.+++.+. +
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~--------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~---~ 234 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL--------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ---M 234 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH--------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC---C
T ss_pred cCCCcccCCcHHHHHHHHHHHh--------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee---h
Confidence 4578899999876665554331 1234589999999999999999999997 66777666 5
Q ss_pred hhhh--hhhhhhhhhhhhhhHHHHHHhhhc-CCceeeC
Q 012671 424 PRSM--RYLIGRRNQRKACCFLLTRLMHFY-ASATVYI 458 (458)
Q Consensus 424 se~~--~~~~ge~~~~~~~i~~lf~~a~~~-~p~iifi 458 (458)
+.++ .+|.|+...+. ..++..+... .|+||||
T Consensus 235 ~~l~~g~~~~g~~~~~l---~~~~~~~~~~~~~~iL~I 269 (854)
T 1qvr_A 235 GSLLAGAKYRGEFEERL---KAVIQEVVQSQGEVILFI 269 (854)
T ss_dssp -----------CHHHHH---HHHHHHHHTTCSSEEEEE
T ss_pred HHhhccCccchHHHHHH---HHHHHHHHhcCCCeEEEE
Confidence 5554 45666554433 3445555544 6889886
No 55
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.52 E-value=2e-07 Score=91.25 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=42.8
Q ss_pred cccCChHHHHHHHHHHHHHHh-hhhhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 359 DIILHPSLQRRIQHLAKATAN-TKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~~~-~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
+++|+....+.+...+..... ......|..++||+||||||||++|++|+..+ +.+++.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 377888877766555444321 12223445689999999999999999999998 44566555
No 56
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.51 E-value=9.6e-08 Score=102.19 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=56.4
Q ss_pred ccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeeccccchh------hhhhhh
Q 012671 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLVHRLLPR------SMRYLI 431 (458)
Q Consensus 358 ~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~~~~~se------~~~~~~ 431 (458)
++++|..++.+.+.......... ...+..++||+||||||||++|++||..++.++..+......+ ....|+
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~--~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~i 158 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLT--KSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYV 158 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHS--SSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhc--ccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHh
Confidence 45888888888776544432211 1125678999999999999999999999999988876322111 112455
Q ss_pred hhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 432 GRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 432 ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
|.... .+...|..+....| ||||
T Consensus 159 g~~~~---~~~~~~~~a~~~~~-vl~l 181 (543)
T 3m6a_A 159 GAMPG---RIIQGMKKAGKLNP-VFLL 181 (543)
T ss_dssp --------CHHHHHHTTCSSSE-EEEE
T ss_pred ccCch---HHHHHHHHhhccCC-EEEE
Confidence 54322 23345555655566 5553
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.48 E-value=4.9e-08 Score=91.12 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=40.0
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
+...|+++++.+.....+..+...... .+..++||+||||||||+++++++..++ ..++.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-----DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-----CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 446788888743223333333333221 2457999999999999999999999875 4444444
No 58
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.44 E-value=3.9e-07 Score=83.80 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=45.2
Q ss_pred CCCCccccCCh-HHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccchhhhhh
Q 012671 354 IKNNGDIILHP-SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLLPRSMRY 429 (458)
Q Consensus 354 ~~~~~dvi~~~-~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~se~~~~ 429 (458)
...|+++++.. .....+..+..+...... ..++.+++||||||||||+++++|+..+ |.+++.+. +++++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~---~~~~~~~ 96 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP-GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY---VPELFRE 96 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE---HHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh-ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE---hHHHHHH
Confidence 34677787655 333344433333322111 1123799999999999999999999988 45555555 5555444
Q ss_pred h
Q 012671 430 L 430 (458)
Q Consensus 430 ~ 430 (458)
+
T Consensus 97 ~ 97 (202)
T 2w58_A 97 L 97 (202)
T ss_dssp H
T ss_pred H
Confidence 3
No 59
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.43 E-value=4.7e-07 Score=94.31 Aligned_cols=73 Identities=11% Similarity=0.148 Sum_probs=47.0
Q ss_pred CCCCCCcccc-CChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh-----Ccceeeeccccchh
Q 012671 352 EAIKNNGDII-LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----EEMLHLLVHRLLPR 425 (458)
Q Consensus 352 ~~~~~~~dvi-~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~-----g~~~~~~~~~~~se 425 (458)
.+...|++++ |+.... .+..+.....+ ... +.++|||||||||||+|+++|++.+ +..++.++ +..
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~---~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~---~~~ 170 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKH---PGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT---SEK 170 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHS---TTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE---HHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhC---CCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee---HHH
Confidence 4556888887 433322 22222221111 112 5799999999999999999999998 67777776 555
Q ss_pred hhhhhhh
Q 012671 426 SMRYLIG 432 (458)
Q Consensus 426 ~~~~~~g 432 (458)
+...+.+
T Consensus 171 ~~~~~~~ 177 (440)
T 2z4s_A 171 FLNDLVD 177 (440)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 60
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.42 E-value=3.4e-07 Score=91.64 Aligned_cols=64 Identities=25% Similarity=0.419 Sum_probs=47.2
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
....|++++++..+...+...+.. .+..+.++.+++||||||||||+|+++||+.++.++...+
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~---~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~s 83 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEA---AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 83 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHH---HHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCccHHHccCcHHHHHHHHHHHHH---HHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 344788899988766655433322 1223456679999999999999999999999988776554
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.39 E-value=3.7e-07 Score=101.02 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=60.1
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh----------Ccceeeeccccc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------EEMLHLLVHRLL 423 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~----------g~~~~~~~~~~~ 423 (458)
...|++++|.+.....+..++. .....|+||+||||||||++|++|+..+ +..++.+. +
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~--------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~---~ 250 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLC--------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD---I 250 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT--------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC---C
T ss_pred cCCCCCccCCHHHHHHHHHHHh--------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc---H
Confidence 3478889999876665544321 1245699999999999999999999987 33444443 4
Q ss_pred hhhh--hhhhhhhhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 424 PRSM--RYLIGRRNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 424 se~~--~~~~ge~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
+.++ .++.|....+ +..+++.+....++||||
T Consensus 251 ~~l~~~~~~~g~~e~~---l~~~~~~~~~~~~~iL~I 284 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKR---FKALLKQLEQDTNSILFI 284 (758)
T ss_dssp C---CCCCCSSCHHHH---HHHHHHHHSSSSCEEEEE
T ss_pred HHHhccccccchHHHH---HHHHHHHHHhcCCeEEEE
Confidence 4444 3455654433 334566677677889886
No 62
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.36 E-value=3.3e-07 Score=90.99 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=42.2
Q ss_pred CccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 357 ~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+++++|++++...+...+.. ..++|||||||||||++|++||..++.+++.+.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~----------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~ 78 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT----------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ 78 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH----------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccceeCcHHHHHHHHHHHHc----------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence 45688998877655433222 249999999999999999999999999888766
No 63
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.36 E-value=7.6e-07 Score=81.29 Aligned_cols=50 Identities=28% Similarity=0.503 Sum_probs=38.7
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
...|++++++......+..++.. ....++||+||||||||++++.++..+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVER--------KNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT--------TCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45688899998877766654432 123469999999999999999999986
No 64
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.36 E-value=5.1e-07 Score=86.77 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=37.7
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
.|++++|+......+...+.... ....++||+||||||||++|++|+..++ .+|+.++
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred ccccceeCCHHHHHHHHHHHHHh------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 67888888776665443333211 1236999999999999999999999885 5677776
No 65
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.35 E-value=4.2e-07 Score=107.73 Aligned_cols=106 Identities=12% Similarity=0.111 Sum_probs=61.6
Q ss_pred CCCCCCCCccccCChHHHHHHHHHHHHHHh--------------hhh-----------------hcCCCcc--eeeecCC
Q 012671 350 PVEAIKNNGDIILHPSLQRRIQHLAKATAN--------------TKI-----------------HQAPFRN--MLFYGPP 396 (458)
Q Consensus 350 ~~~~~~~~~dvi~~~~l~~~l~~l~~~~~~--------------~~~-----------------~~~p~rn--vLl~GPP 396 (458)
......+|++|-+..+.+..+...+.+... .+. .+.++++ +|+||||
T Consensus 1012 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~ 1091 (1706)
T 3cmw_A 1012 GSASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 1091 (1706)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECST
T ss_pred cccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCC
Confidence 345668899998888777755555444321 112 2446666 9999999
Q ss_pred CCChHHHHHHHHHHhCcc---eeeeccc-cchhhh--------hhhhhh----hhhhhhhhHHHHHHhhhcCCceeeC
Q 012671 397 GTGKTMVAREIARKSEEM---LHLLVHR-LLPRSM--------RYLIGR----RNQRKACCFLLTRLMHFYASATVYI 458 (458)
Q Consensus 397 GTGKT~lAkaLA~~~g~~---~~~~~~~-~~se~~--------~~~~ge----~~~~~~~i~~lf~~a~~~~p~iifi 458 (458)
|||||+||++++.+.... .+.|+.. .+++++ ++|+++ +.+ .+..+|..+++..||+||+
T Consensus 1092 g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~---~l~~~~~~ar~~~~~~i~~ 1166 (1706)
T 3cmw_A 1092 SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ---ALEICDALARSGAVDVIVV 1166 (1706)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHH---HHHHHHHHHHHTCCSEEEE
T ss_pred CCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHH---HHHHHHHHHHhcCCeEEEe
Confidence 999999999999988544 3333311 123333 566666 433 4566777889999999985
No 66
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.25 E-value=1.5e-06 Score=86.79 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=42.9
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh---------Ccceeeec
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---------EEMLHLLV 419 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---------g~~~~~~~ 419 (458)
.++++++.+.....+..++... .....+.+++||||||||||++++.++..+ +..++.++
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~----~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPA----LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGG----TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHH----HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 3466888877666554432211 112446799999999999999999999998 67776666
No 67
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.24 E-value=1.9e-06 Score=86.51 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=43.4
Q ss_pred ccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh-----------Ccceeeec
Q 012671 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----------EEMLHLLV 419 (458)
Q Consensus 358 ~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~-----------g~~~~~~~ 419 (458)
+++++.+.....+..++..... ...+++++||||||||||++++.++..+ +..++.++
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHc----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 5688888776666554433211 2445699999999999999999999987 77777766
No 68
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.7e-06 Score=86.57 Aligned_cols=29 Identities=3% Similarity=0.029 Sum_probs=26.0
Q ss_pred cCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 384 QAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 384 ~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..++.+++||||||||||++++.++.++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35667999999999999999999999983
No 69
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.22 E-value=1e-06 Score=87.53 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=42.7
Q ss_pred CCCccccCCh-HHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC----cceeeeccccchhhhhh
Q 012671 355 KNNGDIILHP-SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE----EMLHLLVHRLLPRSMRY 429 (458)
Q Consensus 355 ~~~~dvi~~~-~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g----~~~~~~~~~~~se~~~~ 429 (458)
..|+++++.. .....+..+..+..... ..+..+++||||||||||+||.+||..+. .++..++ .++++..
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~--~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~---~~~l~~~ 195 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYP--SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH---FPSFAID 195 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCS--CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE---HHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhcc--ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE---HHHHHHH
Confidence 4677777644 22223332222222211 11357999999999999999999998765 4444444 4555444
Q ss_pred h
Q 012671 430 L 430 (458)
Q Consensus 430 ~ 430 (458)
+
T Consensus 196 l 196 (308)
T 2qgz_A 196 V 196 (308)
T ss_dssp H
T ss_pred H
Confidence 3
No 70
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=9.3e-07 Score=86.56 Aligned_cols=51 Identities=33% Similarity=0.557 Sum_probs=39.9
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
...|++++|++.....+..++.. + .+.++|||||||||||++|++++..++
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~------~--~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT------G--SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH------T--CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc------C--CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 44688899999887777654432 1 223699999999999999999999864
No 71
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.21 E-value=7.7e-07 Score=88.38 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=38.7
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+...|++++|++.+...+. ..... ....++|||||||||||++|++|+..++
T Consensus 19 ~~~~f~~i~G~~~~~~~l~---~~~~~-----~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALL---LTAVD-----PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHH---HHHHC-----GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHH---HHhhC-----CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 5568999999988655432 11111 1124799999999999999999999986
No 72
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.17 E-value=5.4e-07 Score=95.42 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=34.6
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
|+|++.+.+.+...+.. ..++||+||||||||++|++||..++.
T Consensus 24 ivGq~~~i~~l~~al~~----------~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALS----------GESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp CSSCHHHHHHHHHHHHH----------TCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hHHHHHHHHHHHHHHhc----------CCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 78888877755433222 249999999999999999999998854
No 73
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.13 E-value=1.5e-06 Score=84.86 Aligned_cols=59 Identities=24% Similarity=0.415 Sum_probs=42.8
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh-----Ccceeeec
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----EEMLHLLV 419 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~-----g~~~~~~~ 419 (458)
.+..|++++|++.....+...+.. ....++|||||||||||++|++++..+ +.+++.++
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVER--------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTT--------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhC--------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 345688999999877766543221 223369999999999999999999986 33455554
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.10 E-value=1.3e-05 Score=80.33 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCc--ceeeecCCCCChHHHHHHHHHHh----Ccceeeec
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFR--NMLFYGPPGTGKTMVAREIARKS----EEMLHLLV 419 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~r--nvLl~GPPGTGKT~lAkaLA~~~----g~~~~~~~ 419 (458)
.++++++.+.....+...+..... +.++. +++|+||||||||+++++++..+ +..++.++
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~----~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR----NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH----STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc----CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 346788888776666554433221 12233 89999999999999999999998 45566555
No 75
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=4.6e-06 Score=81.45 Aligned_cols=50 Identities=28% Similarity=0.372 Sum_probs=38.8
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..|++++|++.....+...+.. + .+.++|||||||||||++|++++..+
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-------~-~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-------G-NMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-------C-CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-------C-CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 34688899999887766654321 1 22359999999999999999999986
No 76
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=2.1e-06 Score=85.16 Aligned_cols=52 Identities=31% Similarity=0.476 Sum_probs=39.4
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+..|++++|+++....+...+. ...+.++|||||||||||+++++|+..++.
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~--------~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLK--------SANLPHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTT--------CTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHh--------cCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4468889999887776654321 122346999999999999999999998753
No 77
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.09 E-value=3.6e-06 Score=77.49 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=41.1
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
...|+++++++.....+...... +..+..+||+||||||||++++.++..++..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~-------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHH-------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CccHHHHhCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34678899998877766654432 2233579999999999999999999988653
No 78
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.08 E-value=6.1e-06 Score=82.25 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=42.4
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh------Ccceeeec
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS------EEMLHLLV 419 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~------g~~~~~~~ 419 (458)
.++++++.+.....+....... .....+.+++|+||||||||++++.++..+ +..++.+.
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~----~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPL----YREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGG----GGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHH----HcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 4466888876655554332211 112445699999999999999999999988 66776665
No 79
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=5.7e-06 Score=82.55 Aligned_cols=52 Identities=25% Similarity=0.473 Sum_probs=39.0
Q ss_pred CCCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+..|++++|++.+...+...+.. +. +.++|||||||||||++++++|+.+.
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~------g~--~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE------GK--LPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT------TC--CCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc------CC--CceEEEECCCCCCHHHHHHHHHHHHc
Confidence 345788899998877766543321 22 23699999999999999999999863
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.99 E-value=7.8e-06 Score=80.86 Aligned_cols=54 Identities=24% Similarity=0.267 Sum_probs=37.6
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
++|.......+...+... .....+|||+||||||||++|++|+..+ +.+|+.++
T Consensus 4 iig~s~~~~~~~~~~~~~------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMV------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp CCCCSHHHHHHHHHHHHH------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred cEECCHHHHHHHHHHHHH------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 566655444443333221 1234699999999999999999999976 56777776
No 81
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.98 E-value=8.8e-06 Score=81.31 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=40.9
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
...|++++|++.....+...+.. +..+..+|||||||||||+++++++..++.
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~-------~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHH-------TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCchhhccCcHHHHHHHHHHHHh-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34688899999887776655432 223346899999999999999999998865
No 82
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.97 E-value=5.6e-06 Score=80.66 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=23.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
..++|||||||||||++|.+||+.+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 346999999999999999999997644
No 83
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.89 E-value=9.1e-06 Score=76.28 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=24.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
+++|||||||||||++|.+|++.++-.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 36999999999999999999999864443
No 84
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=1e-05 Score=80.51 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=37.6
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..|+++++++.....+...+. .. ....++||+||||||||+++++|++.+
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~-----~~--~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSD-----QP--RDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTT-----CT--TCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHHh-----hC--CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999887776654320 11 122359999999999999999999964
No 85
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.69 E-value=2.3e-05 Score=69.42 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=27.8
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
+..+++|+||||||||+|+++|+..+ |...+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 45689999999999999999999987 64444444
No 86
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.65 E-value=2.6e-05 Score=70.23 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=28.9
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.++|+|+||||||||++++.|+..+|.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45899999999999999999999999888754
No 87
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.64 E-value=3.4e-05 Score=69.00 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=28.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
..|+|.||||+|||++++.|+..++.+++.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 47899999999999999999999998877643
No 88
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=5e-05 Score=69.72 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.5
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.+...|+|.||||||||++++.|+..+|.+++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 3456899999999999999999999999888654
No 89
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.53 E-value=5.3e-05 Score=91.14 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=45.2
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhC---cceeeec--cccchhhhhhhhhhh---------hhhhhhhHHHHHHhhh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV--HRLLPRSMRYLIGRR---------NQRKACCFLLTRLMHF 450 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~--~~~~se~~~~~~ge~---------~~~~~~i~~lf~~a~~ 450 (458)
.+.++++||||||||||+||.+++..+. ...+.++ ....+.+.. ..|.- .-.......++..++.
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~-~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR-KLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHH-HTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHH-HcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 4567999999999999999999988763 3333333 111233322 22300 0001244566677888
Q ss_pred cCCceeeC
Q 012671 451 YASATVYI 458 (458)
Q Consensus 451 ~~p~iifi 458 (458)
..|++|||
T Consensus 1504 ~~~~lVVI 1511 (2050)
T 3cmu_A 1504 GAVDVIVV 1511 (2050)
T ss_dssp TCCSEEEE
T ss_pred CCCCEEEE
Confidence 89999986
No 90
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.52 E-value=5e-05 Score=68.27 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=29.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
..+|+|+||||+|||++++.|+..+|..++.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 458999999999999999999999998887643
No 91
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.49 E-value=9.9e-05 Score=70.62 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 367 QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 367 ~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
...+..+............++..++|.||||+|||++++.|+..++..++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~ 64 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIID 64 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEEC
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEe
Confidence 33444443333222223344568899999999999999999999986555555
No 92
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.47 E-value=0.00013 Score=71.53 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 364 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 364 ~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.+..+.+..+.............+..++|.||||+|||++++.|+..++..++.++
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is 65 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 65 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 34455555555544433333334567889999999999999999998844444444
No 93
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.43 E-value=7.4e-05 Score=66.89 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=27.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.+++|.||||+|||++++.||..+|.+|+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 3789999999999999999999999887753
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.40 E-value=8.2e-05 Score=74.37 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=23.9
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
.+.+||+||||||||+||..+|...|..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~ 150 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGK 150 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCC
Confidence 3467999999999999999999876655
No 95
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.38 E-value=9.9e-05 Score=66.58 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=28.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+..|+|.||||+|||++++.|+..+|..++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 45788999999999999999999999877653
No 96
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.37 E-value=0.0001 Score=65.11 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=27.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.|+|.||||+|||++++.|+..+|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 688999999999999999999999887654
No 97
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.37 E-value=0.00011 Score=65.36 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=26.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
..++|.||||||||++++.|+..+|..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 478999999999999999999999876654
No 98
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.36 E-value=0.0001 Score=66.78 Aligned_cols=32 Identities=38% Similarity=0.371 Sum_probs=28.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHH-hCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK-SEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~-~g~~~~~~ 418 (458)
..+|+|+||||||||++++.|+.. +|++++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 357999999999999999999999 78887764
No 99
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.36 E-value=0.00011 Score=65.33 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=28.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..+++|.|+||||||++++.|+..+|.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45999999999999999999999999988764
No 100
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.35 E-value=0.00012 Score=65.94 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=27.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..|+|.||||+|||++|+.|+..+|.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3689999999999999999999999888764
No 101
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.35 E-value=9.9e-05 Score=79.69 Aligned_cols=50 Identities=28% Similarity=0.360 Sum_probs=39.2
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
...|++++++..+.+.+...+.. ..++||+||||||||++|++|+..+..
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~----------g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQ----------KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccceEECchhhHhhccccccC----------CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 45688899998877665533321 259999999999999999999998853
No 102
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.31 E-value=0.00011 Score=64.49 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=25.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.|+|.||||+|||++|+.| ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 8889887654
No 103
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.28 E-value=0.00014 Score=67.64 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=28.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+..|+|.||||+|||++++.|+..+|..++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45799999999999999999999999877654
No 104
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.28 E-value=0.00015 Score=66.30 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=28.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+..|+|.||||+|||++|+.|+..+|.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34688999999999999999999999887654
No 105
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.27 E-value=0.00015 Score=65.59 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=28.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+..|+|.||||+|||++++.|+..+|.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45789999999999999999999999887653
No 106
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.26 E-value=3.7e-05 Score=83.09 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=26.1
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
|+||+||||||||+||++|+..++..++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 89999999999999999999998766554
No 107
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=0.00016 Score=64.99 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=26.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
..|+|.||||+|||++|+.|+..+|.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 468899999999999999999999987654
No 108
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.24 E-value=0.00018 Score=63.69 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=27.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
..|+|.||||+|||++++.|+..+|.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 468999999999999999999999988765
No 109
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.23 E-value=0.00017 Score=67.82 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=28.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+.+|+|.||||+|||++++.|+..+|..++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35899999999999999999999999877654
No 110
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.23 E-value=0.00015 Score=65.18 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=27.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..|+|.||||+|||++++.|+..+|..++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4688999999999999999999999776543
No 111
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.23 E-value=0.00014 Score=64.65 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=24.9
Q ss_pred cceeeecCCCCChHHHHHHHHH-HhCcceee
Q 012671 388 RNMLFYGPPGTGKTMVAREIAR-KSEEMLHL 417 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~-~~g~~~~~ 417 (458)
..|+|.||||+|||++|+.|+. .+|..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4688999999999999999998 56655543
No 112
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.20 E-value=0.00018 Score=64.60 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=23.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..|+|.||||+|||++++.|+..+|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988
No 113
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.20 E-value=0.00034 Score=69.67 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=24.5
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+..+|||||||||||++|+++|..++.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3446999999999999999999998764
No 114
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.20 E-value=0.00019 Score=67.08 Aligned_cols=29 Identities=31% Similarity=0.573 Sum_probs=26.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.|+|.||||+||++.|+.|+..+|++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47899999999999999999999987754
No 115
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.18 E-value=0.00026 Score=70.10 Aligned_cols=32 Identities=13% Similarity=0.011 Sum_probs=26.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh------Ccceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS------EEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~------g~~~~~~~ 419 (458)
.++|||||||||||++|.+++..+ ..++..+.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~ 56 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID 56 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc
Confidence 489999999999999999999874 33555554
No 116
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.18 E-value=0.00016 Score=64.74 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=22.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
..|+|.|+||+|||++|+.|+..+|.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 47889999999999999999999998876
No 117
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.17 E-value=0.00019 Score=66.35 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+|+|.||||+|||++|+.|+..+|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 588999999999999999999999877654
No 118
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.17 E-value=0.0002 Score=66.72 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=27.5
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
+..|+|.||||+|||++++.|+..+|..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3579999999999999999999999976654
No 119
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.17 E-value=0.00017 Score=67.08 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=27.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..|+|.||||+|||++++.|+..+|..++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4789999999999999999999999877654
No 120
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.16 E-value=0.0002 Score=64.79 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=27.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..|+|.||||+|||++|+.|+..+|..++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4788999999999999999999999777653
No 121
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.16 E-value=0.0002 Score=66.97 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=28.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+..|+|.||||+|||++++.|+..+|..++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35789999999999999999999999877653
No 122
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.15 E-value=0.00025 Score=64.86 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=28.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+..|+|.||||+|||++++.|+..+|..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45789999999999999999999998777653
No 123
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.14 E-value=0.00027 Score=62.97 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=27.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
...++|.||||+|||++++.|+..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4578899999999999999999998876655
No 124
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.14 E-value=0.00019 Score=72.61 Aligned_cols=31 Identities=29% Similarity=0.537 Sum_probs=28.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
..+++|+||||+|||+++++||..++++|+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 3479999999999999999999999998854
No 125
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.13 E-value=0.00022 Score=65.82 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=26.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+|+|.||||+|||++|+.|+..+|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 578999999999999999999999877654
No 126
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.13 E-value=0.00021 Score=64.12 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=27.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..|+|.||||+|||++++.|+..+|..++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4788999999999999999999999777653
No 127
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.12 E-value=0.00024 Score=67.06 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=27.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
++-|+|.||||+||++.|+.|+..+|+.++.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 4578889999999999999999999887654
No 128
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.12 E-value=0.0002 Score=64.19 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=22.5
Q ss_pred ceeeecCCCCChHHHHHHHHHHhC
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.|+|.||||+|||++++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999887
No 129
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.11 E-value=0.00026 Score=64.68 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=27.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+..|+|.||||+|||++++.|+..+|..++.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 34788999999999999999999999876653
No 130
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.11 E-value=0.00026 Score=67.86 Aligned_cols=31 Identities=35% Similarity=0.407 Sum_probs=27.4
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.+++.||||+|||++|+.||..++..++.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 5789999999999999999999998776553
No 131
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.11 E-value=0.00067 Score=68.35 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=34.6
Q ss_pred ccccCChHHHHHHHHHH-HHHHhhhhhcCCCcceee--ecCCCCChHHHHHHHHHHh
Q 012671 358 GDIILHPSLQRRIQHLA-KATANTKIHQAPFRNMLF--YGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 358 ~dvi~~~~l~~~l~~l~-~~~~~~~~~~~p~rnvLl--~GPPGTGKT~lAkaLA~~~ 411 (458)
+++++.+.....+..+. ..... .....+.++++ |||||||||++++.++..+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 55777776555554443 22111 00023468999 9999999999999999887
No 132
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.09 E-value=0.00027 Score=67.23 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=28.9
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
++..|+|.||||+|||++|+.|+..+|..++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456899999999999999999999998877653
No 133
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.08 E-value=0.00031 Score=61.98 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=26.5
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.|+|.|+||+|||++++.|+..+|.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58899999999999999999999987765
No 134
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.06 E-value=0.00035 Score=64.04 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=27.3
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
+...++|.||||+|||++++.|+..+|..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 44678899999999999999999999866554
No 135
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.05 E-value=0.00025 Score=63.98 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=26.9
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
...++|.||||+|||++++.|+...+...+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 457889999999999999999988766555554
No 136
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.01 E-value=0.00032 Score=64.93 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=26.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+|+|.||||+|||++++.|+..+|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 588999999999999999999999877654
No 137
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.00 E-value=0.00053 Score=62.32 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=28.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh-Ccceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS-EEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~-g~~~~~~~ 419 (458)
+..|+|.||||+|||++++.|+..+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3578899999999999999999998 67776654
No 138
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.95 E-value=0.0024 Score=62.48 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=33.7
Q ss_pred ccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 358 ~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+.+++.+.....|...... + +.++++||+|+|||+|++.++...+
T Consensus 12 ~~~~gR~~el~~L~~~l~~------~----~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN------Y----PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH------C----SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred HhcCChHHHHHHHHHHHhc------C----CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 3467777655555543321 1 5899999999999999999999886
No 139
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.89 E-value=0.00051 Score=62.21 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=25.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.|+|.||||+|||++++.|+..+|..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 57899999999999999999999986653
No 140
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.89 E-value=0.00058 Score=65.55 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=27.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHH---hCcceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK---SEEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~---~g~~~~~~~ 419 (458)
+..|+|.|+||+|||++|+.|+.. .|..++.++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 347889999999999999999998 677776444
No 141
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.89 E-value=0.00066 Score=61.83 Aligned_cols=27 Identities=26% Similarity=0.200 Sum_probs=24.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
..|+|.||||+|||++++.|+..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 468899999999999999999998764
No 142
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.88 E-value=0.00066 Score=60.80 Aligned_cols=33 Identities=21% Similarity=0.100 Sum_probs=28.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
...+.|.||||+|||++++.|+..+ |.+++.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 4578899999999999999999988 88877654
No 143
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.86 E-value=0.00058 Score=63.86 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=26.3
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.|+|.||||+|||++++.|+..+|..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999999766554
No 144
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.84 E-value=0.0014 Score=60.06 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=25.0
Q ss_pred cCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 384 QAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 384 ~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..+...+.|.||||+|||++++.|+..++
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34456788999999999999999999984
No 145
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.83 E-value=0.0007 Score=62.72 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=26.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
..+.|.||||||||++++.|+..+|.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 368899999999999999999999877654
No 146
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.82 E-value=0.00073 Score=60.67 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=26.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.|+|.|+||+|||++++.|+..+ |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 88776643
No 147
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.80 E-value=0.00097 Score=60.12 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=25.8
Q ss_pred eeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 390 MLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
|.|.||||+|||++++.|+..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6789999999999999999999 88887554
No 148
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.79 E-value=0.00052 Score=62.80 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=25.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
+..|+|.||||+|||++++.|+..+|..++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 357889999999999999999998865433
No 149
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.77 E-value=0.00078 Score=64.79 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=28.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..+|.|.||||+|||++++.|+..+|.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 35899999999999999999999999988763
No 150
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.75 E-value=0.00078 Score=64.18 Aligned_cols=30 Identities=33% Similarity=0.381 Sum_probs=26.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
..+.+.||||+|||++++.|+..+|+.++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 368899999999999999999999987755
No 151
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.73 E-value=0.00091 Score=63.29 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=26.9
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
+..++|.||||+|||++++.|+..+|+....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4578899999999999999999998876543
No 152
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.72 E-value=0.0013 Score=66.97 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=28.8
Q ss_pred cCCCcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 384 QAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 384 ~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
..+...++|+||||||||+|++.|+..++..++.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 4555689999999999999999999998766655
No 153
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.71 E-value=0.00084 Score=67.04 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=28.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
..++++||||||||++++.||..++..++.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 47889999999999999999999998777653
No 154
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.71 E-value=0.00092 Score=61.39 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=26.1
Q ss_pred hhcCCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 382 ~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+..++..++|.||||+|||++++.|+..++
T Consensus 7 ~~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 7 HHMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp --CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3456778899999999999999999999874
No 155
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.69 E-value=0.0007 Score=61.98 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=24.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
+..|+|.||||+|||++++.|+..++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4578899999999999999999987543
No 156
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.69 E-value=0.00087 Score=61.15 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=25.7
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.|.+.||||+|||++++.|+. +|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 578999999999999999999 88777653
No 157
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.64 E-value=0.0011 Score=60.27 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=27.1
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.|.+.||||+|||++++.|+..+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 678999999999999999999999887763
No 158
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.62 E-value=0.00094 Score=61.13 Aligned_cols=28 Identities=25% Similarity=0.142 Sum_probs=24.7
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
.+.|.||||+|||++++.|+. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 577899999999999999998 8877764
No 159
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.55 E-value=0.0019 Score=63.21 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=27.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+.++++||+|+|||+|++.++..++..++.++
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~ 62 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLD 62 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999998876655444
No 160
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.51 E-value=0.0014 Score=59.50 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=23.6
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcce
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEML 415 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~ 415 (458)
++.|.||+|+|||+|.+.|+..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 578999999999999999999987443
No 161
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.50 E-value=0.0013 Score=60.83 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.3
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
++.-+.|.||||+|||++++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998874
No 162
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.49 E-value=0.0017 Score=62.03 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=27.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
...+.|.||+|+|||++++.|+..+|+.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3468899999999999999999999987654
No 163
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.48 E-value=0.0011 Score=59.70 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+...++|.|+||+|||++++.|+..++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3457889999999999999999998853
No 164
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.46 E-value=0.0016 Score=59.00 Aligned_cols=31 Identities=23% Similarity=0.056 Sum_probs=26.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+..|.+.||||+|||++++.|+.. |.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 347889999999999999999998 8877654
No 165
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.45 E-value=0.0019 Score=59.56 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=27.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..+.|.||||||||++++.|+..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3688999999999999999999999887664
No 166
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.44 E-value=0.002 Score=60.63 Aligned_cols=32 Identities=25% Similarity=0.246 Sum_probs=27.9
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
+...+.|.||||+|||++++.|+..+|++++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 34578899999999999999999999987765
No 167
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.37 E-value=0.002 Score=58.00 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=21.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCc
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.++|.||||+|||++++.|+..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 5778999999999999999986643
No 168
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.27 E-value=0.0021 Score=62.32 Aligned_cols=29 Identities=34% Similarity=0.405 Sum_probs=24.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHh-Cccee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS-EEMLH 416 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~-g~~~~ 416 (458)
..|+|.||||+|||++++.|+..+ |..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 468899999999999999999874 65554
No 169
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.24 E-value=0.0024 Score=58.84 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=27.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..|.|.|++|||||++++.|+..+|.+++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 3677899999999999999999989888764
No 170
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.23 E-value=0.0027 Score=60.36 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=25.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcce
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEML 415 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~ 415 (458)
+..|.+.||||+|||++|+.|+..+|.++
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 34688999999999999999999999874
No 171
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.23 E-value=0.002 Score=59.03 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=26.9
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh-Ccceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS-EEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~-g~~~~~~~ 419 (458)
...+.+.||||+|||++++.|+..+ +..++...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 3467799999999999999999987 66665543
No 172
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.19 E-value=0.0028 Score=58.55 Aligned_cols=30 Identities=23% Similarity=0.145 Sum_probs=25.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..|.|.||||+|||++++.|+. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 3678999999999999999998 88877653
No 173
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.19 E-value=0.0023 Score=58.08 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.9
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+...+.|.||||+|||++++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578899999999999999999876
No 174
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.15 E-value=0.006 Score=75.73 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=41.6
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+|.-|...+....+..+... ..+++++||||||||.+++.||..+|.+++.+.
T Consensus 625 lViTPltdr~~~tl~~Al~~-------~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~n 677 (2695)
T 4akg_A 625 LIYTPLLLIGFATLTDSLHQ-------KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFN 677 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHHT-------TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEE
T ss_pred ceecHHHHHHHHHHHHHHHh-------CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEE
Confidence 55566666666555555432 247889999999999999999999999999886
No 175
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.15 E-value=0.0039 Score=62.72 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.3
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+.+.++++||||+|||+||..++..+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999998764
No 176
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.15 E-value=0.0039 Score=57.04 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=27.2
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.+..-++++||||+|||+|+..++...|...+.++
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~ 52 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVD 52 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEE
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 33456789999999999999999985565555554
No 177
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.13 E-value=0.0024 Score=64.14 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=26.6
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
..|++.||+|+|||.|+..||..++..++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs 70 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVIN 70 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence 478899999999999999999999876654
No 178
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.13 E-value=0.0028 Score=58.40 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=23.7
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+...++|.||||+|||++++.|+..++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345788999999999999999999875
No 179
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.10 E-value=0.003 Score=58.04 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+...++++||||+|||+|++.|+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999999654
No 180
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.08 E-value=0.0032 Score=58.17 Aligned_cols=29 Identities=21% Similarity=0.183 Sum_probs=27.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
-|.+.||+|||||++++.||..+|++|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 57789999999999999999999999985
No 181
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.07 E-value=0.0034 Score=56.46 Aligned_cols=25 Identities=16% Similarity=0.497 Sum_probs=21.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+-+.|.||||+|||+|++.|+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4577999999999999999998753
No 182
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.05 E-value=0.004 Score=57.15 Aligned_cols=24 Identities=29% Similarity=0.629 Sum_probs=21.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
|-|+|.||+|+|||+|++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998775
No 183
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.03 E-value=0.0033 Score=57.58 Aligned_cols=31 Identities=26% Similarity=0.179 Sum_probs=25.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC--cceee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE--EMLHL 417 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g--~~~~~ 417 (458)
+.-+.+.||+|+|||+|++.|+..++ ..|+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 34677999999999999999999987 55544
No 184
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.03 E-value=0.0036 Score=56.73 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.9
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.|.||+|+|||++++.|+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3467789999999999999999875
No 185
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.02 E-value=0.0035 Score=60.92 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=25.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..|.|.||||+|||++|+.|+ .+|.+++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 468899999999999999999 688877654
No 186
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.00 E-value=0.007 Score=73.13 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=28.5
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.+.+++||+||||||||+||.+++.+. |...+.++
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit 1116 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1116 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 456799999999999999999998764 55666665
No 187
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.99 E-value=0.0049 Score=56.71 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+..-+.+.||+|+|||+|++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344677899999999999999999875
No 188
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.96 E-value=0.008 Score=62.36 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=32.6
Q ss_pred CCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 356 ~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.|+++ .++-...+..+..+... ...++|+.||||||||+++.+++..+
T Consensus 22 ~~~~L--n~~Q~~av~~~~~~i~~------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 22 TFDDL--TEGQKNAFNIVMKAIKE------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CSSCC--CHHHHHHHHHHHHHHHS------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccC--CHHHHHHHHHHHHHHhc------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45443 35545556555444322 11389999999999999999999877
No 189
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.92 E-value=0.0031 Score=64.84 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=26.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
+.-|+|+||||+|||++|+.|+..+|..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4568889999999999999999988766554
No 190
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.90 E-value=0.0048 Score=55.70 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=21.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+-+.|.||+|+|||++++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3577899999999999999998764
No 191
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.89 E-value=0.0096 Score=60.32 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=25.9
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
+.+.++++||||+|||+||..++..+ |..++.++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 34578899999999999999998765 44444443
No 192
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.89 E-value=0.01 Score=54.20 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.3
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++.-+.+.||+|+|||++++.|+..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33467789999999999999999876
No 193
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.87 E-value=0.0052 Score=58.26 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=24.7
Q ss_pred ceeeecCCCCChHHHHHHHHHHh---Ccceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS---EEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~---g~~~~~ 417 (458)
+++|.||||||||+++..+|..+ |.+++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v 39 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMA 39 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEE
Confidence 79999999999999999999876 666544
No 194
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.82 E-value=0.0037 Score=66.26 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=24.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcce
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEML 415 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~ 415 (458)
+..|+|.|+||+|||++|+.|+..++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 34788999999999999999999985444
No 195
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.81 E-value=0.0049 Score=57.24 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCcceeeecCCCCChHHHHHHHHHH
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+...++|+||||+|||+|+..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457889999999999999999985
No 196
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.78 E-value=0.0051 Score=61.77 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=26.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
..|++.||+|+|||+||+.|+..++..++.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 3678999999999999999999998655443
No 197
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.75 E-value=0.0059 Score=60.58 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=26.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.-+++.||+|+|||.|+..||..++..++..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~ 41 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISV 41 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEec
Confidence 4577899999999999999999998665443
No 198
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.74 E-value=0.0046 Score=58.71 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=26.2
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.+-|.||||+|||++|+.|+..+|++++.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 455789999999999999999999887654
No 199
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.74 E-value=0.0052 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=21.9
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+.+.+.|.||+|+|||+|.+.|+...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34678899999999999999999865
No 200
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.64 E-value=0.0058 Score=56.81 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=24.8
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
+...++++||||+|||+|+..++... |...+.++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34578899999999999998887653 44444443
No 201
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.63 E-value=0.021 Score=58.01 Aligned_cols=33 Identities=36% Similarity=0.408 Sum_probs=28.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
..++|++|++|||||++|++|...++ .+|+.++
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~ 195 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALN 195 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEE
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEe
Confidence 34789999999999999999998875 5677766
No 202
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.61 E-value=0.0056 Score=56.27 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.2
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..-+.|+||||+|||+|++.|+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34467899999999999999999854
No 203
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.60 E-value=0.0029 Score=57.81 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.2
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCc
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
-|.|.||||+|||++++.|+..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999998853
No 204
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.58 E-value=0.0059 Score=56.90 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.4
Q ss_pred CCcceeeecCCCCChHHHHHHHH
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIA 408 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA 408 (458)
+..-++|+||||+|||+|++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34578899999999999999998
No 205
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.56 E-value=0.0081 Score=59.46 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+...++++||||+|||+||..++..+
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 344578899999999999999999875
No 206
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.55 E-value=0.0066 Score=60.40 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.7
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
-|++.||+|+|||.|+..||..++..++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis 33 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVIS 33 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceee
Confidence 57789999999999999999998765433
No 207
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.53 E-value=0.0054 Score=63.93 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
+..|+|.|+||+|||++++.|+..++..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 347899999999999999999999875543
No 208
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.49 E-value=0.0059 Score=66.23 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=20.3
Q ss_pred ceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
-.|++||||||||++.-.+..++ |..++..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 46889999999998555444333 44444443
No 209
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.48 E-value=0.0073 Score=62.01 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=26.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
..-|++.||+|+|||.|+..||..++..++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 3467889999999999999999999866544
No 210
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.41 E-value=0.015 Score=53.96 Aligned_cols=35 Identities=29% Similarity=0.264 Sum_probs=25.3
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHH----hCcceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARK----SEEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~----~g~~~~~~~ 419 (458)
.+..-++++||||+|||.||..++.+ .|..++.++
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 33457889999999999999887654 245555544
No 211
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.37 E-value=0.0074 Score=56.21 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+.++|.||||+|||.||..|+...+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 35899999999999999999998765
No 212
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.37 E-value=0.011 Score=54.65 Aligned_cols=26 Identities=12% Similarity=0.457 Sum_probs=22.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+-++|.||+|+|||+|++.|.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35677899999999999999998754
No 213
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.36 E-value=0.0054 Score=57.25 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=15.7
Q ss_pred CcceeeecCCCCChHHHHHHHH-HHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIA-RKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA-~~~ 411 (458)
..-+.|.||+|+|||++++.|+ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3467789999999999999999 765
No 214
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.35 E-value=0.0088 Score=56.36 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=26.6
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHL 417 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~ 417 (458)
-|.+.|++|||||++++.||..+|++|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 46789999999999999999999999876
No 215
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.34 E-value=0.0081 Score=55.60 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=18.7
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++||||||||++|..+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999887544
No 216
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.33 E-value=0.0093 Score=55.52 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=22.8
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..-+.|.||+|+|||+|++.|+...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44578899999999999999999876
No 217
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.30 E-value=0.0095 Score=56.09 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.5
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
..-|+|.||||+|||++++.|+..++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346778999999999999999999863
No 218
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.29 E-value=0.0077 Score=60.85 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..-++++||||||||+|+..++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999999875
No 219
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.25 E-value=0.009 Score=57.48 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-++++||||+|||+|+..++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998654
No 220
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.22 E-value=0.02 Score=55.98 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.6
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
++.-|.+.||+|+|||+|++.|+..++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3445678999999999999999998864
No 221
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.22 E-value=0.0083 Score=53.54 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=17.8
Q ss_pred CcceeeecCCCCChHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREI 407 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaL 407 (458)
..-+.|.||||+|||+|++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 346789999999999999953
No 222
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.19 E-value=0.011 Score=54.34 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.|.||+|+|||+|.++|+..+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3467799999999999999999886
No 223
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.17 E-value=0.013 Score=57.81 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=24.9
Q ss_pred hcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 383 HQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 383 ~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
...+...+.|+||+|+|||+|++.|++.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34555678899999999999999999987
No 224
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.15 E-value=0.011 Score=55.39 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=23.5
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+..-+.|.||+|+|||+|.+.|+....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4455777999999999999999998764
No 225
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.15 E-value=0.022 Score=56.29 Aligned_cols=27 Identities=19% Similarity=0.049 Sum_probs=22.5
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
++.-+.+.||+|+|||+|++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 334566899999999999999999763
No 226
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.14 E-value=0.013 Score=63.53 Aligned_cols=33 Identities=21% Similarity=0.100 Sum_probs=29.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
+..|+|.|+||+|||++|+.|+..+ |.+++.+.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 4568899999999999999999999 88887764
No 227
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.12 E-value=0.014 Score=58.34 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.9
Q ss_pred CCcceeeecCCCCChHHHHHHHHHH
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+...++++||||+|||+||..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3446789999999999999999987
No 228
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.09 E-value=0.012 Score=55.56 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=23.6
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
.-+-|.||+|+|||+|++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 356689999999999999999988854
No 229
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.04 E-value=0.01 Score=63.67 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=24.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~ 418 (458)
+.+++.||||||||+++.+|+..+ |..++.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 588999999999999999998765 4555444
No 230
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.03 E-value=0.012 Score=59.48 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=26.0
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
+.+.++++||||+|||+||..++..+ |...+.++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34578999999999999999999764 44444444
No 231
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.03 E-value=0.026 Score=67.30 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=27.5
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhC---cceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSE---EMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~~ 419 (458)
.+...++|+||||+|||+||..+|..+. ..++.++
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 4566899999999999999999988763 3444444
No 232
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.03 E-value=0.029 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=18.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.-|+|.||+|+|||++++.|+..++
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577889999999999999999883
No 233
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.02 E-value=0.013 Score=52.17 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.7
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+..-+.|.||.|+|||+|.+.|+..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3444678999999999999999999873
No 234
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.00 E-value=0.012 Score=56.93 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=22.9
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..-+++.||||+|||+|++.|+..+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344578899999999999999999875
No 235
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.96 E-value=0.024 Score=57.14 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
...+++.||+|+|||++.++|+..+.-
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 347889999999999999999987743
No 236
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.85 E-value=0.017 Score=54.49 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=27.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
++|++||+|+|||+++..++..++...+.++
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 6999999999999999999998876666655
No 237
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.78 E-value=0.013 Score=57.53 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCcceeeecCCCCChHHHHHHHHHH
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+...++++||||+|||+||..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999976
No 238
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.76 E-value=0.016 Score=57.08 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.9
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++..+.|.||+|+|||++++.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999876
No 239
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.76 E-value=0.026 Score=52.59 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=24.6
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC---cceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE---EMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g---~~~~~~ 418 (458)
.-|.|.||+|+|||++++.|+..+. .+++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3567889999999999999999884 455443
No 240
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.76 E-value=0.016 Score=55.83 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=23.7
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+...+++.||+|+|||++.++|+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3445788999999999999999998764
No 241
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.73 E-value=0.015 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=21.2
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+.|.||+|+|||++.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999987
No 242
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.60 E-value=0.043 Score=55.32 Aligned_cols=55 Identities=29% Similarity=0.279 Sum_probs=36.2
Q ss_pred cccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCcc--eeeec
Q 012671 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEEM--LHLLV 419 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~--~~~~~ 419 (458)
++++.......+...+.... ....++|++|++||||+++|++|...++-. |+.++
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vn 186 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLN 186 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEE
T ss_pred cccccchHHHHHHhhhhhhh------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEE
Confidence 35666554444433332221 112479999999999999999999988643 66655
No 243
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.60 E-value=0.025 Score=51.40 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=22.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~ 418 (458)
.-++++||||+|||+++..++..+ |...+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 356789999999999997777653 5554443
No 244
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.53 E-value=0.0089 Score=56.99 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=25.0
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh-Ccce
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS-EEML 415 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~-g~~~ 415 (458)
++..|+|.|++|+|||++++.|+..+ +..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34578899999999999999999998 5433
No 245
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.52 E-value=0.018 Score=56.41 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=22.7
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++..++|.||+|+|||+++..||..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688899999999999999999765
No 246
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.51 E-value=0.017 Score=62.51 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=19.2
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+|++||||||||+++..+...+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999877776654
No 247
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.51 E-value=0.017 Score=57.97 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.2
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..-++++||||+|||+|+..|+...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344567899999999999999999886
No 248
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.47 E-value=0.02 Score=50.97 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.1
Q ss_pred ceeeecCCCCChHHHHHHHHHHhC
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
-.+|+||+|+|||++..+|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 456899999999999999998764
No 249
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.45 E-value=0.03 Score=54.96 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.-+.|.||+|+|||+|++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566899999999999999999876
No 250
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.43 E-value=0.018 Score=59.54 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.2
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++..++|+||||+|||+++..||..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 251
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.42 E-value=0.023 Score=53.35 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..|.|.|++|+|||++++.|+..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999983
No 252
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.40 E-value=0.02 Score=56.45 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.7
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++.-++|.||+|+|||+++..||..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34578899999999999999999876
No 253
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.37 E-value=0.036 Score=59.45 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=26.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC----cceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE----EMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g----~~~~~~~ 419 (458)
..|+|.|+||+|||++|+.|+..++ .+++.+.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 4688999999999999999999987 5555554
No 254
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.36 E-value=0.041 Score=54.73 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.5
Q ss_pred ceeeecCCCCChHHHHHHHHHHhC
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
-+.+.||+|||||+++++|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 466889999999999999999875
No 255
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.35 E-value=0.012 Score=57.45 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=18.9
Q ss_pred ceeeecCCCCChHHHHHHHHHHhC
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
-|.+.||+|+|||++|+.|+..+|
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999877
No 256
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.33 E-value=0.064 Score=66.78 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=32.2
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.|..|+||+|++|+||+++++..|..+|+.++.+.
T Consensus 1607 ~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~ 1641 (2695)
T 4akg_A 1607 QVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPK 1641 (2695)
T ss_dssp SSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCC
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEE
Confidence 56679999999999999999999999999998876
No 257
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.25 E-value=0.045 Score=51.27 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=26.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
.-|.|.||+|+|||++++.|+..++.+...+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ 37 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLK 37 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEEE
Confidence 46778999999999999999999987544333
No 258
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.24 E-value=0.023 Score=55.90 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++.-+.|.||+|+|||++++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999876
No 259
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.22 E-value=0.029 Score=49.89 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+...|++.|++|+|||+|...|....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998754
No 260
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.20 E-value=0.024 Score=56.48 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.++.-+.|.||+|+|||++++.||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999876
No 261
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.09 E-value=0.057 Score=55.62 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=34.6
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
...++++...+.....+..+. ..+...+++.||+|+|||++.++|...+..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---------~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---------KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---------TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---------HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 345666666665444444331 123346889999999999999999998753
No 262
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.06 E-value=0.023 Score=51.88 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=23.5
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+|++|++|+|||.+|..++.. |.+.+.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yi 29 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYI 29 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEE
Confidence 688999999999999999987 7665443
No 263
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.04 E-value=0.025 Score=57.20 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.0
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.+...+++.||+|+|||++.++|+....
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3445789999999999999999998764
No 264
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.04 E-value=0.024 Score=56.45 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=21.4
Q ss_pred cCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 384 QAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 384 ~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+.|..-++++||||||||+||..++..+
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3343357899999999999988777654
No 265
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.03 E-value=0.024 Score=58.69 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++..++|.||||+|||+++..||..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999776
No 266
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.95 E-value=0.032 Score=54.95 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=26.3
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.|..-+++.|+||+|||.|+..+|... |.+++.++
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 444578899999999999999999765 33444444
No 267
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.93 E-value=0.026 Score=60.88 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.0
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999887776554
No 268
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.87 E-value=0.026 Score=57.86 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=21.2
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHH
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.+..-++|+||||||||+|+..|+..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 34457889999999999999977744
No 269
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.79 E-value=0.026 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.5
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.-+.+.||+|+|||+|.++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35778999999999999999976
No 270
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.79 E-value=0.035 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.5
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..+|+|+||||+|||+|...|....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999999865
No 271
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.70 E-value=0.033 Score=56.24 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++.-++|.||+|+|||++++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44578899999999999999999876
No 272
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.66 E-value=0.034 Score=47.43 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.++++.|++|+|||+|...+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998653
No 273
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.61 E-value=0.047 Score=51.42 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=24.8
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.-+|++||||+|||+++..++..+ |..++.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 456778999999999998888776 55565554
No 274
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.60 E-value=0.041 Score=50.09 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.+++||.||||+|||++|..|...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 469999999999999999999874
No 275
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.59 E-value=0.034 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.9
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.++|.||+|+|||+|.+.|+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68899999999999999999863
No 276
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.58 E-value=0.037 Score=49.97 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.-++|.||+|+|||+|+..|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999874
No 277
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.56 E-value=0.031 Score=56.22 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.4
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+..++++.||+|+|||+|.++|+....-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4468999999999999999999987653
No 278
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.56 E-value=0.038 Score=49.81 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=25.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.-+.|.||+|+|||+++..|+..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 467899999999999999999876 45544444
No 279
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.51 E-value=0.034 Score=58.82 Aligned_cols=26 Identities=0% Similarity=-0.029 Sum_probs=24.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCc
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.+|+|.|+||||||+++++|+..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999999999986
No 280
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.49 E-value=0.036 Score=57.51 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=26.4
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
++..++|.||||+|||+++..||..+ |..+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35678899999999999999999776 44444433
No 281
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.47 E-value=0.055 Score=50.01 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=29.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeeeccccc
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLLVHRLL 423 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~~~ 423 (458)
.+|++|+++|+|||++|-++|..+ |..++.+.+..+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg 67 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG 67 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 489999999999999999998765 788877754443
No 282
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.45 E-value=0.03 Score=52.91 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=22.7
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..-+.+.||+|+|||+|.+.|+...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344567799999999999999999765
No 283
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.45 E-value=0.033 Score=58.91 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=23.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
..++++.||+|+|||++.++|+....-
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 358999999999999999999988753
No 284
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.43 E-value=0.034 Score=55.75 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=24.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcce
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEML 415 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~ 415 (458)
...+.+.||+|+|||+|++.|++.+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 35788999999999999999999876443
No 285
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.42 E-value=0.034 Score=61.92 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=19.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+|++||||||||++...+...+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999877776554
No 286
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.41 E-value=0.088 Score=47.98 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
...++|.|+||+|||+|+..|+..++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999998864
No 287
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.39 E-value=0.028 Score=52.65 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.+.||+|+|||+|.+.|+...
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467789999999999999999765
No 288
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.39 E-value=0.04 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+|++.|+||+|||+|...+....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 78999999999999999998753
No 289
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.37 E-value=0.044 Score=56.75 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=26.5
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh----Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS----EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~----g~~~~~~~ 419 (458)
.+..-+++.||||+|||+|+..++... |.+++.++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 444578899999999999999998764 44555544
No 290
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.35 E-value=0.032 Score=52.79 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=22.8
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..-+.+.||+|+|||+|.+.|+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344577899999999999999999765
No 291
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.34 E-value=0.037 Score=52.55 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.5
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+ .-+.+.||+|+|||+|.++|+...
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 44 567799999999999999999765
No 292
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.33 E-value=0.042 Score=46.87 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=20.6
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+|++.|+||+|||+|...+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 79999999999999999988653
No 293
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.25 E-value=0.039 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=21.2
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++.+.||+|+|||+|.+.|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999875
No 294
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.25 E-value=0.041 Score=46.81 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=20.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+|++.|++|+|||+|...+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 78999999999999999998654
No 295
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.22 E-value=0.045 Score=54.30 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+++-++|.||+|+|||+++..||..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45578899999999999999999876
No 296
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.20 E-value=0.046 Score=56.42 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=26.2
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh----Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS----EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~----g~~~~~~~ 419 (458)
.+..-++++||||+|||.||..+|... |.+++.++
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344567899999999999999988764 44555544
No 297
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.19 E-value=0.042 Score=49.34 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.3
Q ss_pred ceeeecCCCCChHHHHHHHHHHhC
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.++|.||+|+|||+|.+.++....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 678999999999999999998653
No 298
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.18 E-value=0.045 Score=46.74 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|+||+|||+|...+...-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 489999999999999999998653
No 299
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.18 E-value=0.045 Score=57.59 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.6
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++.-++|.||+|+|||++++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34567899999999999999999876
No 300
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.14 E-value=0.046 Score=46.88 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=20.7
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+|++.|++|+|||+|...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998654
No 301
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.12 E-value=0.078 Score=56.12 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=31.2
Q ss_pred cccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHHHH
Q 012671 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 359 dvi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaLA~ 409 (458)
.+||.+.....|....... ....+-++++||+|+|||.||..++.
T Consensus 125 ~~vGR~~~l~~L~~~L~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKL------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTS------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred eecccHHHHHHHHHHHhcc------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3677776666555443211 12345788999999999999999874
No 302
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.10 E-value=0.044 Score=52.04 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=22.5
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..-|+|.||||+|||++++.|+..++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34677899999999999999998874
No 303
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.10 E-value=0.037 Score=53.19 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=22.5
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+..-+.+.||+|+|||+|.++|+....
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344677899999999999999997653
No 304
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.01 E-value=0.039 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.+.||+|+|||+|.+.|+...
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467799999999999999999765
No 305
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.00 E-value=0.05 Score=47.27 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.6
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|+||+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 38999999999999999999854
No 306
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.99 E-value=0.051 Score=46.71 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.0
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+|++.|+||+|||+|...+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 79999999999999999998754
No 307
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.95 E-value=0.049 Score=47.17 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.3
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|+||+|||+|...+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 37999999999999999999754
No 308
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.93 E-value=0.091 Score=54.76 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.4
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..-+.+.||+|+|||+|++.|++..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 445578899999999999999999875
No 309
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=92.93 E-value=0.14 Score=49.77 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=31.9
Q ss_pred CCCCCccccCChHHHHHHHHHHH-------HHHhhhhhcCCCcceeeecCCCCChHHHH
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAK-------ATANTKIHQAPFRNMLFYGPPGTGKTMVA 404 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~-------~~~~~~~~~~p~rnvLl~GPPGTGKT~lA 404 (458)
+...|+++.+++.+.+.+...-. ..........+.+++|+++|+|||||+..
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 45577777777777665543210 00011111234579999999999999854
No 310
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.92 E-value=0.052 Score=47.20 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.5
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.-+|++.|++|+|||+|...+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3489999999999999999988643
No 311
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.91 E-value=0.048 Score=55.05 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.1
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..-+.|.||+|||||+|.++|+...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33467789999999999999999865
No 312
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.91 E-value=0.061 Score=56.74 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=25.9
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
+++.|+|.|+||+|||+++..||..+ |..+..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 35689999999999999999999776 55554443
No 313
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=92.91 E-value=0.038 Score=57.84 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=30.2
Q ss_pred ccCChHHHHHHHHHHHHHHhhhhhcCCCcceeeecCCCCChHHHHHHH-HHHh
Q 012671 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREI-ARKS 411 (458)
Q Consensus 360 vi~~~~l~~~l~~l~~~~~~~~~~~~p~rnvLl~GPPGTGKT~lAkaL-A~~~ 411 (458)
|+|++.+++.+.-.+... ..+.. .--|+||.|+||| ||++++++ +..+
T Consensus 215 I~G~e~vK~aLll~L~GG-~~k~r--gdihVLL~G~PGt-KS~Lar~i~~~i~ 263 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSC-VGKNS--ERLHVLLAGYPVV-CSEILHHVLDHLA 263 (506)
T ss_dssp STTCHHHHHHHHHHHTTC-CSSGG--GCCCEEEESCHHH-HHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHcCC-ccccC--CceeEEEECCCCh-HHHHHHHHHHHhC
Confidence 677877665543222110 00111 0128999999999 99999999 6654
No 314
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.90 E-value=0.048 Score=52.51 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.2
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHH
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.+..-+.+.||+|+|||+|.+.|+..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34456779999999999999999985
No 315
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.90 E-value=0.029 Score=59.87 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.5
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhC
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
...+.|.||+|+|||+|+++|+..++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 35788999999999999999999985
No 316
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.88 E-value=0.039 Score=52.31 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=22.8
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+...+.+.||+|+|||+|.++|+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567899999999999999999765
No 317
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.88 E-value=0.039 Score=52.79 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.+.||+|+|||+|.++|+...
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467799999999999999999765
No 318
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.88 E-value=0.046 Score=60.90 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=17.7
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.+|++||||||||+++..+...
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999976666543
No 319
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.87 E-value=0.046 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
..-+.+.||+|+|||+|.+.|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346779999999999999999985
No 320
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.86 E-value=0.05 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.0
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+|++.|+||+|||+|...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999999854
No 321
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.85 E-value=0.077 Score=53.11 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=27.0
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.|..-+++.|+||+|||+|+..+|... |.+++.++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 444568899999999999999998874 55555544
No 322
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.84 E-value=0.075 Score=50.02 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=23.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
+.-|.|.|++|+|||++++.|+..++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345778899999999999999998765
No 323
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.84 E-value=0.048 Score=55.10 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.|.||+|||||+|.++|+...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3467789999999999999999865
No 324
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=92.84 E-value=0.043 Score=49.58 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=20.9
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+++|+++|+|+|||+++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999888877654
No 325
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.83 E-value=0.028 Score=55.91 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
..++++.||+|+|||+|.++|+....-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 358999999999999999999988643
No 326
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.79 E-value=0.055 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.5
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+|++.|+||+|||+|...+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
No 327
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.77 E-value=0.05 Score=55.39 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.|.||+|||||+|.++|+...
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3467799999999999999999865
No 328
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.74 E-value=0.11 Score=48.58 Aligned_cols=29 Identities=31% Similarity=0.231 Sum_probs=25.9
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
.|-|+|.+|||||++++.|+. +|.+++..
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 577899999999999999998 99988764
No 329
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.72 E-value=0.042 Score=52.30 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.3
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..-+.+.||+|+|||+|.+.|+...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567799999999999999999875
No 330
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.71 E-value=0.044 Score=52.94 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.9
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..-+.|.||+|+|||+|.+.|+...
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567799999999999999999875
No 331
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.71 E-value=0.044 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..-+.+.||+|+|||+|.+.|+...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567799999999999999999865
No 332
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.71 E-value=0.1 Score=55.61 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCc
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
..|+|.|+||+|||++|+.|+..++.
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 46889999999999999999998764
No 333
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.69 E-value=0.043 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.+.||+|+|||+|.+.|+...
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467799999999999999999765
No 334
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.68 E-value=0.059 Score=46.38 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|+||+|||+|...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 379999999999999999998653
No 335
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.68 E-value=0.059 Score=46.20 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=20.6
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|+||+|||+|...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999999863
No 336
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.67 E-value=0.078 Score=54.92 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=27.1
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.|..-+++.|+||+|||.||..+|... |.+++.++
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 444578899999999999999988776 55555554
No 337
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.67 E-value=0.045 Score=52.50 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..-+.+.||+|+|||+|.+.|+...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344578899999999999999999765
No 338
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.66 E-value=0.046 Score=52.65 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.7
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..-+.|.||+|+|||+|.+.|+...
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 344567799999999999999999765
No 339
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.65 E-value=0.047 Score=48.49 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=19.5
Q ss_pred ceeeecCCCCChHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~ 409 (458)
.+++.|+||+|||+|...++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999999986
No 340
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.64 E-value=0.058 Score=54.42 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..-+.|.||+|||||+|.+.|+...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 33467789999999999999999765
No 341
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.62 E-value=0.15 Score=50.83 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=25.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~ 418 (458)
...|.|.|+||+|||+|+..|+..+ |..+..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 4578899999999999999999876 4444433
No 342
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.59 E-value=0.057 Score=46.51 Aligned_cols=20 Identities=25% Similarity=0.576 Sum_probs=18.7
Q ss_pred ceeeecCCCCChHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIA 408 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA 408 (458)
+|++.|+||+|||+|...+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 343
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.59 E-value=0.046 Score=52.22 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.7
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHhC
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+...+.+.||+|+|||+|.+.|+....
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 344677999999999999999998763
No 344
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=92.59 E-value=12 Score=41.35 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=22.9
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHhHHHHHHHHH
Q 012671 94 EAFDI-MRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEE-HRNLVQQKAQAR 147 (458)
Q Consensus 94 ~~~~~-~~~~e~t~q~e~~~~~~e~~~~~~~~~~~~~~~~~ee-~r~~~~~~~~~~ 147 (458)
-|+|+ .+.||...+++.+....|.....+..++ ..+++.|+ |+++++.|++..
T Consensus 660 lAiEItT~sqEa~Ar~~A~~~eQea~g~Lerqki-~d~a~aE~~r~~Llel~a~s~ 714 (861)
T 2zuo_A 660 LAIEITTNSQEAAAKHEAQRLEQEARGRLERQKI-LDQSEAEKARKELLELEAMSM 714 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Confidence 35555 5566666555533333232222222222 23333333 444455555554
No 345
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.57 E-value=0.062 Score=46.00 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=20.3
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+|++.|+||+|||+|...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999999864
No 346
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.56 E-value=0.058 Score=54.37 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=21.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.|.||+|||||+|.+.|+...
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467789999999999999999765
No 347
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.56 E-value=0.058 Score=46.96 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=20.0
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.++|.|+||+|||+|...+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999863
No 348
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.56 E-value=0.062 Score=54.51 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=21.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.|.||+|||||+|.++|+...
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3467789999999999999999765
No 349
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.55 E-value=0.061 Score=47.22 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.8
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|+||+|||+|...+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999864
No 350
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.50 E-value=0.061 Score=46.19 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=20.1
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+|++.|+||+|||+|...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999999863
No 351
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.50 E-value=0.048 Score=52.94 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=21.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.+.||+|+|||+|.++|+...
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3467789999999999999999765
No 352
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.49 E-value=0.05 Score=52.15 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.3
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..-+.|.||+|+|||+|.+.|+...
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567799999999999999999765
No 353
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.46 E-value=0.05 Score=52.03 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=21.3
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
..+|.|.|+||+|||+|..+|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999764
No 354
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.46 E-value=0.05 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.2
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..-+.+.||+|+|||+|.+.|+...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34567799999999999999999765
No 355
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.45 E-value=0.057 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.4
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|+||+|||+|...+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 37999999999999999999753
No 356
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.45 E-value=0.08 Score=48.41 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
...+++.|+||+|||+|...++...+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 4588899999999999999999886543
No 357
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.44 E-value=0.054 Score=46.50 Aligned_cols=21 Identities=38% Similarity=0.743 Sum_probs=19.1
Q ss_pred ceeeecCCCCChHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~ 409 (458)
.|++.|+||+|||+|...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 789999999999999999863
No 358
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.44 E-value=0.034 Score=50.05 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCc
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
..+.+.||+|+|||+|++.|+..+.-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35778999999999999999988743
No 359
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.43 E-value=0.058 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.3
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|+||+|||+|...|...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998743
No 360
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.40 E-value=0.062 Score=54.46 Aligned_cols=25 Identities=40% Similarity=0.516 Sum_probs=21.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.|.||+|||||+|.++|+...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3467789999999999999999765
No 361
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.36 E-value=0.063 Score=46.50 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.6
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|++|+|||+|...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999999854
No 362
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.34 E-value=0.051 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.2
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..-+.+.||+|+|||+|.+.|+...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33467799999999999999999765
No 363
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.29 E-value=0.065 Score=47.21 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.8
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
..++|.|++|+|||+|...|+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999863
No 364
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.27 E-value=0.068 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.5
Q ss_pred ceeeecCCCCChHHHHHHHHHHhC
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
-|.|.||+|+|||++++.|+..+.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 577889999999999999998873
No 365
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.27 E-value=0.071 Score=46.73 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=20.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+|++.|+||+|||+|...|....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 79999999999999999998654
No 366
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.25 E-value=0.071 Score=45.89 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.7
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|+||+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999764
No 367
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.25 E-value=0.059 Score=51.92 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..-+.+.||+|+|||+|.++|+...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34467789999999999999999765
No 368
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.22 E-value=0.072 Score=46.15 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|++|+|||+|...+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 489999999999999999998654
No 369
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.22 E-value=0.071 Score=47.14 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=21.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|++|+|||+|...|....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 389999999999999999998654
No 370
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.22 E-value=0.071 Score=47.35 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|+|.|+||+|||+|...|...-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 389999999999999999998743
No 371
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.20 E-value=0.051 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.1
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+..-+.|.||+|||||+|.+.|+...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 33467789999999999999999765
No 372
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.18 E-value=0.073 Score=46.48 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=21.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|++|+|||+|...|...-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 489999999999999999998643
No 373
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.18 E-value=0.12 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.|+++.||||+|||++++.|...+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 499999999999999999998764
No 374
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.15 E-value=0.055 Score=51.72 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.+.||+|+|||+|.+.|+...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467799999999999999999865
No 375
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.15 E-value=0.085 Score=45.81 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
...|++.|+||+|||+|...+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999753
No 376
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.13 E-value=0.09 Score=52.70 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=25.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
..-+.|.||+|+|||+|.+.|++...-+..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 347889999999999999999999865543
No 377
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.08 E-value=0.075 Score=54.93 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.5
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+++.++|.|++|+|||+++-.||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346788999999999999999999776
No 378
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.08 E-value=0.078 Score=51.81 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.3
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++..+.+.||+|+|||+++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567788999999999999999876
No 379
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.07 E-value=0.073 Score=46.19 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=21.0
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.+|++.|++|+|||+|...+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999999875
No 380
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.04 E-value=0.078 Score=46.19 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=20.7
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|+||+|||+|...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 38999999999999999999864
No 381
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.04 E-value=0.072 Score=46.73 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|++|+|||+|...+....
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 389999999999999999998653
No 382
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.04 E-value=0.072 Score=47.07 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-.|++.|+||+|||+|...+....
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998753
No 383
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.01 E-value=0.14 Score=47.25 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=24.0
Q ss_pred eeeecCCCCChHHHHHHHHHHh--Ccceeeec
Q 012671 390 MLFYGPPGTGKTMVAREIARKS--EEMLHLLV 419 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~--g~~~~~~~ 419 (458)
|.|-|+.|+|||++++.|+..+ |.+++...
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 5678999999999999999988 45554443
No 384
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.079 Score=46.12 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|+||+|||+|...+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 389999999999999999998654
No 385
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.96 E-value=0.08 Score=46.65 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=21.0
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-.|++.|+||+|||+|..+|...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999876
No 386
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.95 E-value=0.08 Score=46.25 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.6
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+|++.|+||+|||+|...+....
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999998643
No 387
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.90 E-value=0.082 Score=46.33 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|+|.|+||+|||+|...+....
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 489999999999999999998653
No 388
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.88 E-value=0.08 Score=55.83 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.7
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+...++++||||||||+|++.++...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344578899999999999999999764
No 389
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.88 E-value=0.082 Score=46.61 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.0
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|+||+|||+|.+.|....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999999999888654
No 390
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.88 E-value=0.097 Score=54.17 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=25.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCccee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEMLH 416 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~~~ 416 (458)
..-+.+.||+|||||+|.+.|++....+..
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 346789999999999999999999865543
No 391
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.75 E-value=0.081 Score=53.96 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..-+.|.||+|||||+|.++|+...
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 344577899999999999999999754
No 392
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.74 E-value=0.087 Score=45.91 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.0
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|+||+|||+|...+....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998643
No 393
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.73 E-value=0.23 Score=45.28 Aligned_cols=57 Identities=21% Similarity=0.174 Sum_probs=31.9
Q ss_pred CCCccccCChHHHHHHHHHHHH--HHhhh---hhcCCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 355 KNNGDIILHPSLQRRIQHLAKA--TANTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 355 ~~~~dvi~~~~l~~~l~~l~~~--~~~~~---~~~~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..|+++.+++.+.+.+...-.. +.... ......+++++.+|+|+|||..+-..+...
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 3577676667666655432110 00000 000112589999999999998766555444
No 394
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.69 E-value=0.088 Score=46.58 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|+|.|+||+|||+|...|....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 389999999999999999998754
No 395
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.68 E-value=0.039 Score=52.06 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.2
Q ss_pred eeeecCCCCChHHHHHHHHHHhC
Q 012671 390 MLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g 412 (458)
+.++||+|+|||+|..+|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 45789999999999999998874
No 396
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.66 E-value=0.089 Score=46.59 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|+||+|||+|...+...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 389999999999999999998654
No 397
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.66 E-value=0.086 Score=55.57 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCCcceeeecCCCCChHHHHHH--HHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVARE--IARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAka--LA~~~ 411 (458)
.+...+++.||||||||+|++. ++...
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3456788999999999999999 44443
No 398
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.63 E-value=0.14 Score=47.93 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=25.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh--Ccceeeec
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS--EEMLHLLV 419 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~--g~~~~~~~ 419 (458)
...+++.|++|+|||+++..|+..+ |..+..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3467789999999999999999776 44444443
No 399
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.57 E-value=0.082 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.7
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-.++|.|+||+|||+|...|+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 400
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.52 E-value=0.07 Score=52.16 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.9
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..-+.+.||+|+|||+|.+.|+...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344567899999999999999999765
No 401
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.51 E-value=0.095 Score=46.76 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.-+|++.|+||+|||+|...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 348999999999999999999865
No 402
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.51 E-value=0.054 Score=54.53 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=21.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..-+.|.||+|||||+|.+.|+...
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467789999999999999999765
No 403
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=91.51 E-value=0.21 Score=51.28 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=30.6
Q ss_pred CCCCCccccCChHHHHHHHHHHH-------HHHhhhhhcCCCcceeeecCCCCChHHHH
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAK-------ATANTKIHQAPFRNMLFYGPPGTGKTMVA 404 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~-------~~~~~~~~~~p~rnvLl~GPPGTGKT~lA 404 (458)
+...|++..+++.+.+.+...-. ..........+.+++|++||+|+|||..+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 34567777777776665543110 00001111124579999999999999864
No 404
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=91.50 E-value=19 Score=39.66 Aligned_cols=15 Identities=27% Similarity=0.570 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 012671 156 ELARKRLQTDHEAQR 170 (458)
Q Consensus 156 ~L~rkr~q~e~e~~~ 170 (458)
.|+|+++.++.+...
T Consensus 687 ~Lerqki~d~a~aE~ 701 (861)
T 2zuo_A 687 RLERQKILDQSEAEK 701 (861)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444444444
No 405
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.50 E-value=0.073 Score=51.23 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.7
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
...+.+.||+|+|||+|.+.|+...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467789999999999999999875
No 406
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.46 E-value=0.08 Score=46.52 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.0
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+|++.|+||+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999999864
No 407
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.45 E-value=0.097 Score=46.17 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|+||+|||+|...|....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 389999999999999999998653
No 408
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.44 E-value=0.1 Score=49.70 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=25.1
Q ss_pred eeeecCCCCChHHHHHHHHHHhCcceeee
Q 012671 390 MLFYGPPGTGKTMVAREIARKSEEMLHLL 418 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~g~~~~~~ 418 (458)
+.|+|++|+|||++++.|...+|.+++.+
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~~~~ 32 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVKYQL 32 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEECCT
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEec
Confidence 56899999999999999999888776543
No 409
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.44 E-value=0.094 Score=54.87 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=26.1
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh----Ccceeeec
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS----EEMLHLLV 419 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~----g~~~~~~~ 419 (458)
+..-+++.||||+|||.|+..+|... |.+++.++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 34467899999999999999999775 44555544
No 410
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.43 E-value=0.12 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.3
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+|+|.|++|+|||+|...+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 89999999999999999998765
No 411
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.43 E-value=0.099 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.0
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-.|++.|++|+|||+|...+....
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 389999999999999999988643
No 412
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.42 E-value=0.16 Score=50.57 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.6
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+...+.|.||||+|||+|.++|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 334567799999999999999999765
No 413
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.42 E-value=0.092 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.9
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
..|++.|+||+|||+|...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999973
No 414
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.36 E-value=0.075 Score=46.36 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-.|++.|+||+|||+|...+...-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 379999999999999999998753
No 415
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.34 E-value=0.1 Score=46.61 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|+|.|++|+|||+|...+....
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 489999999999999999998643
No 416
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.33 E-value=0.097 Score=46.64 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|++|+|||+|...+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 389999999999999999998654
No 417
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.33 E-value=0.1 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|+||+|||+|...+...-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999999998643
No 418
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.31 E-value=0.1 Score=46.42 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|+||+|||+|...+....
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 389999999999999999998754
No 419
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.30 E-value=0.11 Score=53.26 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+...++++||||||||+|+..|++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 344589999999999999999999865
No 420
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.30 E-value=0.1 Score=45.57 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.1
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-.+++||.|+|||.+..+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999998665
No 421
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.30 E-value=0.1 Score=46.40 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.4
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.|+|.|+||+|||+|...+....
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 89999999999999998887654
No 422
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.29 E-value=0.1 Score=46.34 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.3
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+|++.|++|+|||+|...+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 8999999999999999999864
No 423
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.29 E-value=0.1 Score=46.12 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.7
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|+|.|++|+|||+|...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999854
No 424
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.27 E-value=0.09 Score=51.49 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=24.9
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh---Ccceeee
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS---EEMLHLL 418 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~ 418 (458)
+..+++.||+|+|||+++..||..+ |..+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4567789999999999999999776 4444443
No 425
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.27 E-value=0.1 Score=46.25 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=21.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
..+|++.|+||+|||+|...|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999754
No 426
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.23 E-value=0.1 Score=45.67 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.5
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.+|+|.|+||+|||+|...+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 38999999999999999999853
No 427
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.22 E-value=0.1 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCcceeeecCCCCChHHHHHHHHHHh
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
++..++|.||+|+|||+++..||..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45578889999999999999999887
No 428
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.22 E-value=0.1 Score=46.69 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|+||+|||+|...+....
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 489999999999999999997543
No 429
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.20 E-value=0.099 Score=46.77 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.0
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|+|.|+||+|||+|...+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999998643
No 430
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.19 E-value=0.085 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.5
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.-+.|.||.|+|||++++.|+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35668899999999999999987
No 431
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.19 E-value=0.31 Score=48.27 Aligned_cols=58 Identities=22% Similarity=0.325 Sum_probs=34.9
Q ss_pred CCCCCCCCCCccccCChHHHHHHHHHHH-------HHHhhhhhcCCCcceeeecCCCCChHHHHH
Q 012671 348 AGPVEAIKNNGDIILHPSLQRRIQHLAK-------ATANTKIHQAPFRNMLFYGPPGTGKTMVAR 405 (458)
Q Consensus 348 ~~~~~~~~~~~dvi~~~~l~~~l~~l~~-------~~~~~~~~~~p~rnvLl~GPPGTGKT~lAk 405 (458)
..+..+...|+++.+++.+.+.+...-. ............+++|+.+|+|+|||+.+-
T Consensus 18 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 18 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp TSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred CCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 3334456678888777877776654211 000011111234799999999999998753
No 432
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=91.16 E-value=0.23 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.0
Q ss_pred CcceeeecCCCCChHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~ 409 (458)
.+.|.++|++|+|||+||+.+++
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46788999999999999999996
No 433
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.14 E-value=0.11 Score=46.47 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.8
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.-+|++.|+||+|||+|...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3489999999999999999998754
No 434
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.08 E-value=0.2 Score=45.78 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=25.3
Q ss_pred eeeecCCCCChHHHHHHHHHHh---Ccceeeeccc
Q 012671 390 MLFYGPPGTGKTMVAREIARKS---EEMLHLLVHR 421 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~~~ 421 (458)
|.|-|+-|+|||+.++.|+..+ |.+++.....
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 4577999999999999999887 6666655433
No 435
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.00 E-value=0.23 Score=46.03 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=29.9
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHhCcc-eeeeccccchhhhh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKSEEM-LHLLVHRLLPRSMR 428 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~g~~-~~~~~~~~~se~~~ 428 (458)
.|..-|+|+|.||+||+++|..+...+|.. +..++ +++.+.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~---msD~iK 50 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLR---LSGPLK 50 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEEC---THHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEE---ccHHHH
Confidence 466678899999999999999998877632 33344 444444
No 436
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.99 E-value=0.11 Score=46.61 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.8
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|+||+|||+|...+...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999999854
No 437
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.94 E-value=0.11 Score=46.71 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.6
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|+|.|+||+|||+|...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999864
No 438
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.92 E-value=0.1 Score=45.83 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.0
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.-+|++.|+||+|||+|...+...
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999753
No 439
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=90.92 E-value=0.52 Score=46.16 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=18.3
Q ss_pred CCcceeeecCCCCChHHHHHHHH
Q 012671 386 PFRNMLFYGPPGTGKTMVAREIA 408 (458)
Q Consensus 386 p~rnvLl~GPPGTGKT~lAkaLA 408 (458)
..+++|+.+|+|+|||+.+-..+
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34799999999999998655443
No 440
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.85 E-value=0.12 Score=45.51 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.7
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
..|++.|++|+|||+|...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999999765
No 441
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.84 E-value=0.11 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|+|.|+||+|||+|...+...-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 489999999999999999998754
No 442
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.80 E-value=0.11 Score=47.21 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-.|++.|+||+|||+|...+...-
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999998753
No 443
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.70 E-value=0.068 Score=48.13 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=20.5
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
...+.|.||||+|||+|..+|+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 347889999999999999988754
No 444
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.66 E-value=0.074 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=10.1
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|+||+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999988754
No 445
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.65 E-value=0.18 Score=46.07 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=25.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~~ 419 (458)
.-.+++||+|+|||+.+..++..+ |..++.+.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 356679999999999888888776 67766664
No 446
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.65 E-value=0.13 Score=46.56 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+|++.|+||+|||+|...+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 447
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.64 E-value=0.12 Score=45.78 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.4
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|++|+|||+|...+....
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999998754
No 448
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.63 E-value=0.077 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.3
Q ss_pred CcceeeecCCCCChHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~ 409 (458)
.-+|++.|+||+|||+|...+..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998873
No 449
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.58 E-value=0.13 Score=45.68 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=20.8
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|+||+|||+|...|...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 48999999999999999999864
No 450
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.58 E-value=0.12 Score=46.89 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|+|.|+||+|||+|...+....
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 389999999999999999998643
No 451
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=90.52 E-value=0.18 Score=46.08 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=30.8
Q ss_pred CCCCccccCChHHHHHHHHHHHH--HHhhh---hhcCCCcceeeecCCCCChHHH-HHHHHHH
Q 012671 354 IKNNGDIILHPSLQRRIQHLAKA--TANTK---IHQAPFRNMLFYGPPGTGKTMV-AREIARK 410 (458)
Q Consensus 354 ~~~~~dvi~~~~l~~~l~~l~~~--~~~~~---~~~~p~rnvLl~GPPGTGKT~l-AkaLA~~ 410 (458)
...|+++-+++.+.+.+...-.. +.... ......+++++.+|+|+|||.. +..+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 34577666666666655433110 00000 0001136899999999999986 3334433
No 452
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.51 E-value=0.15 Score=47.49 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=17.1
Q ss_pred cceeeecCCCCChHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIA 408 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA 408 (458)
+++++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 589999999999997655443
No 453
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.50 E-value=0.11 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.7
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-.|++.|+||+|||+|...+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 454
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.45 E-value=0.099 Score=53.98 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.6
Q ss_pred eeeecCCCCChHHHHHHHHHH
Q 012671 390 MLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~ 410 (458)
+.|.||+|+|||+|.+.|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999875
No 455
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.40 E-value=0.12 Score=45.92 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=21.4
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
...|+|.|++|+|||+|...+....
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987543
No 456
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.36 E-value=0.13 Score=45.86 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.0
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|++|+|||+|...+...
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999998743
No 457
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.33 E-value=0.13 Score=47.10 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=21.3
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCc
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
-.+++||.|+|||++..+|.-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 5678999999999999999876654
No 458
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.33 E-value=0.13 Score=45.49 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.2
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.-+|++.|+||+|||+|...+...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999853
No 459
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.30 E-value=0.37 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=18.6
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+++|+.+|+|+|||..+-..+..
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 68999999999999876554443
No 460
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.29 E-value=0.078 Score=52.29 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.5
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..-+.+.||+|+|||+|.+.|++..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 455678899999999999999999865
No 461
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.25 E-value=0.14 Score=46.28 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.8
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.+|++.|++|+|||+|...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 38999999999999999999864
No 462
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.24 E-value=0.13 Score=46.29 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.9
Q ss_pred cceeeecCCCCChHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~ 409 (458)
-+|++.|++|+|||+|...+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4899999999999999999874
No 463
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.16 E-value=0.15 Score=51.48 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.5
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.+..-+.+.||+|+|||+|.++|+...
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 334467789999999999999999765
No 464
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.14 E-value=0.19 Score=52.45 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.3
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCc
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
..++++|++|||||.|...||.....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46788899999999999999999875
No 465
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.10 E-value=0.13 Score=46.07 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.0
Q ss_pred cceeeecCCCCChHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~ 409 (458)
-+|++.|+||+|||+|...+..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999964
No 466
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.02 E-value=0.15 Score=46.21 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.2
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+|+|.|+||+|||+|...|...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 8999999999999999999854
No 467
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.98 E-value=0.15 Score=45.95 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.5
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|+|.|+||+|||+|...+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 38999999999999999999754
No 468
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.96 E-value=0.15 Score=47.47 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.6
Q ss_pred CcceeeecCCCCChHHHHHHHHHHh
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
..+|+|.|+||+|||+|..+|....
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 3489999999999999999998643
No 469
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.95 E-value=0.15 Score=45.82 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.8
Q ss_pred ceeeecCCCCChHHHHHHHHHHh
Q 012671 389 NMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
+|++.|+||+|||+|...+....
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 89999999999999999998743
No 470
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.93 E-value=0.11 Score=46.71 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.9
Q ss_pred cceeeecCCCCChHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~ 409 (458)
..|++.|+||+|||+|...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999974
No 471
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.92 E-value=0.14 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.4
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+|++.|++|+|||+|...|...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999998743
No 472
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.91 E-value=0.24 Score=49.15 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.9
Q ss_pred CCCcceeeecCCCCChHHHHHHHHHHh
Q 012671 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 385 ~p~rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
.....+.+.||||+|||++...|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344578899999999999999999765
No 473
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=89.91 E-value=0.23 Score=47.69 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=25.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
+++++.+|+|+|||+.+-..+...+...+.++
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~ 63 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVT 63 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEC
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEe
Confidence 58999999999999987777766676666554
No 474
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.87 E-value=0.14 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.1
Q ss_pred cceeeecCCCCChHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~ 409 (458)
-+|++.|++|+|||+|...+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3899999999999999999975
No 475
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.86 E-value=0.12 Score=45.36 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.7
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
-+|++.|++|+|||+|...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999854
No 476
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.68 E-value=0.16 Score=45.79 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=21.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-.|++.|+||+|||+|...+....
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999998643
No 477
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.65 E-value=0.16 Score=45.84 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|+||+|||+|...+....
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCC
Confidence 489999999999999999998644
No 478
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=89.58 E-value=0.24 Score=45.62 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.0
Q ss_pred cceeeecCCCCChH-HHHHHHHHHh--Ccceeeec
Q 012671 388 RNMLFYGPPGTGKT-MVAREIARKS--EEMLHLLV 419 (458)
Q Consensus 388 rnvLl~GPPGTGKT-~lAkaLA~~~--g~~~~~~~ 419 (458)
+-.++|||.|+||| +|.+++.+.. |..++.++
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 45667999999999 8999988764 56666664
No 479
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.58 E-value=0.13 Score=45.62 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|++.|++|+|||+|...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999997654
No 480
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.52 E-value=0.17 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=21.5
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..++|+||||||||+|+..|+....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh
Confidence 4789999999999999998887653
No 481
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.45 E-value=0.18 Score=46.09 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=21.1
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-+|+|.|+||+|||+|...|...-
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 389999999999999999998643
No 482
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.40 E-value=0.14 Score=46.09 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.6
Q ss_pred cceeeecCCCCChHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~ 409 (458)
-.|+|.|+||+|||+|...+..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999853
No 483
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=89.29 E-value=0.19 Score=53.71 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=17.9
Q ss_pred CcceeeecCCCCChHHHHHH-HHHH
Q 012671 387 FRNMLFYGPPGTGKTMVARE-IARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAka-LA~~ 410 (458)
..++|+.||||||||+++.. ++..
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l 46 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWL 46 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Confidence 35789999999999996543 4433
No 484
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=89.29 E-value=0.23 Score=46.06 Aligned_cols=54 Identities=26% Similarity=0.201 Sum_probs=30.2
Q ss_pred CCCCCccccCChHHHHHHHHHHHH--HHhhh---hhcCCCcceeeecCCCCChHHHHHH
Q 012671 353 AIKNNGDIILHPSLQRRIQHLAKA--TANTK---IHQAPFRNMLFYGPPGTGKTMVARE 406 (458)
Q Consensus 353 ~~~~~~dvi~~~~l~~~l~~l~~~--~~~~~---~~~~p~rnvLl~GPPGTGKT~lAka 406 (458)
+...|+++-+.+.+.+.+...-.. +.... ......+++|+.+|+|+|||..+-.
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 345677777777766655432110 00000 0001136899999999999986443
No 485
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.21 E-value=0.19 Score=50.60 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=21.6
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
..+.|.||||+|||+|..+|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4678999999999999999997554
No 486
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.19 E-value=0.14 Score=50.02 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.1
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+|++.||+|+|||+|.+.|+..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999998753
No 487
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.09 E-value=0.21 Score=44.67 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.|++.|+||+|||+|...+...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 488
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.05 E-value=0.2 Score=45.71 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=21.2
Q ss_pred cceeeecCCCCChHHHHHHHHHHh
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS 411 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~ 411 (458)
-.|+|.|++|+|||+|...+....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 389999999999999999998653
No 489
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.05 E-value=0.16 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred cceeeecCCCCChHHHHHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
++|+|.|+||+|||+|..+|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47899999999999999999764
No 490
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.00 E-value=0.089 Score=46.92 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=4.7
Q ss_pred ceeeecCCCCChHHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~ 410 (458)
+|++.|++|+|||+|...+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 8999999999999999988765
No 491
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.95 E-value=0.2 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.5
Q ss_pred CcceeeecCCCCChHHHHHHHHHH
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARK 410 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~ 410 (458)
.+++||.||+|+|||++|..|...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 468999999999999999999874
No 492
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=88.93 E-value=0.77 Score=42.18 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.7
Q ss_pred cceeeecCCCCChHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVAR 405 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAk 405 (458)
+++++.+|+|+|||+.+-
T Consensus 63 ~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHH
Confidence 689999999999998544
No 493
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=88.92 E-value=0.17 Score=48.17 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=19.6
Q ss_pred ceeeecCCCCChHHHHHHHHH
Q 012671 389 NMLFYGPPGTGKTMVAREIAR 409 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~ 409 (458)
.|+|.|+||+|||+|..+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 789999999999999999975
No 494
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.92 E-value=0.2 Score=52.46 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=22.0
Q ss_pred cceeeecCCCCChHHHHHHHHHHhC
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSE 412 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g 412 (458)
.-+.|.||+|+|||+|.++|+....
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 5677899999999999999998763
No 495
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.89 E-value=0.26 Score=50.25 Aligned_cols=31 Identities=32% Similarity=0.633 Sum_probs=23.6
Q ss_pred cceeeecCCCCChHHHHHHHHHHh---Ccceeee
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKS---EEMLHLL 418 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~---g~~~~~~ 418 (458)
.|++++||||+|||.+.+.|...+ |..++++
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~ 87 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV 87 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 599999999999999887666543 5454443
No 496
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=88.89 E-value=0.27 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.7
Q ss_pred cceeeecCCCCChHHHHHHHHHHhCc
Q 012671 388 RNMLFYGPPGTGKTMVAREIARKSEE 413 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAkaLA~~~g~ 413 (458)
.-.+|+||.|+|||+|..+|+..++.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 45778999999999999999987764
No 497
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=88.78 E-value=0.25 Score=44.31 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=16.0
Q ss_pred cceeeecCCCCChHHHHHH
Q 012671 388 RNMLFYGPPGTGKTMVARE 406 (458)
Q Consensus 388 rnvLl~GPPGTGKT~lAka 406 (458)
+++++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5899999999999986433
No 498
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=88.78 E-value=0.39 Score=49.13 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=27.3
Q ss_pred ceeeecCCCCChHHHHHHHHHHhCcceeeec
Q 012671 389 NMLFYGPPGTGKTMVAREIARKSEEMLHLLV 419 (458)
Q Consensus 389 nvLl~GPPGTGKT~lAkaLA~~~g~~~~~~~ 419 (458)
++|+++|+|+|||..+..++..++...++++
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~ 140 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence 6999999999999999999888887777766
No 499
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.68 E-value=0.17 Score=49.99 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.1
Q ss_pred CcceeeecCCCCChHHHHHHHHHHhCcc
Q 012671 387 FRNMLFYGPPGTGKTMVAREIARKSEEM 414 (458)
Q Consensus 387 ~rnvLl~GPPGTGKT~lAkaLA~~~g~~ 414 (458)
.+++||.||||+|||++|..|.. -|..
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~ 173 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHL 173 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCE
Confidence 56999999999999999988864 3443
No 500
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.67 E-value=0.28 Score=51.50 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=24.9
Q ss_pred cceeeecCCCCChHHH-HHHHHHHhCccee
Q 012671 388 RNMLFYGPPGTGKTMV-AREIARKSEEMLH 416 (458)
Q Consensus 388 rnvLl~GPPGTGKT~l-AkaLA~~~g~~~~ 416 (458)
..++++||+|||||.| ...|+++.+.+++
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~ 192 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQKGQDVI 192 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGGSCSEE
T ss_pred CEEEEECCCCCCchHHHHHHHHHhhcCCcE
Confidence 4789999999999999 5699999887754
Done!