BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012673
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 139/336 (41%), Gaps = 23/336 (6%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI----AIVGYGEDDVYLHTAPLCHI 118
+P+ V + ++SGTTG PKGV+++H LI ++ + + +DV L P+ HI
Sbjct: 176 SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHI 235
Query: 119 GGLSSAMAM-LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 177
L+S M L VGA + +PKFE S L +E++ V+ VP +M +A + K
Sbjct: 236 YALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK-- 293
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLY--DPTLET 235
S++ I +GG L EL FP+A+L YGMTE L + +P
Sbjct: 294 HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIK 353
Query: 236 PGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 295
PG N V G + + P G I RG +M Y +
Sbjct: 354 PGACGTVVRNAEMKIVDPETGASLPRNQP--------------GEICIRGDQIMKGYLND 399
Query: 296 FLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXX 355
A E WL +++V R IK G V P E+EA+L+ HP
Sbjct: 400 PEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEI 459
Query: 356 XXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQ 391
+ E+ VA V E Q +E Q
Sbjct: 460 SDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQ 495
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 156/398 (39%), Gaps = 41/398 (10%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI----AIVGYGEDDVYLHTAPLCHI 118
+P+ V + ++SGTTG PKGV+++H L+ ++ + + DDV L P+ HI
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 282
Query: 119 GGLSSAMAM-LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 177
L+S M L VGA + +PKFE LE +++ VT VP I+ +A +K
Sbjct: 283 YALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKY- 341
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLY--DPTLET 235
S++ + +G L EL FP AKL YGMTE L + +P
Sbjct: 342 -DLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVK 400
Query: 236 PGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 295
G N V G + + P G I RG +M Y +
Sbjct: 401 SGACGTVVRNAEMKIVDPDTGDSLSRNQP--------------GEICIRGHQIMKGYLNN 446
Query: 296 FLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXX 355
A + WL +++V R IK G V P E+EA+L+ HP
Sbjct: 447 PAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDI 506
Query: 356 XXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLT 415
E+ VA V + + SE + Q +Q K +
Sbjct: 507 TDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQ-----------FVSKQVVFYKRIN 555
Query: 416 GFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 453
V + + P +GKI R ++R ++ + L S
Sbjct: 556 K-------VFFTESIPKAPSGKILRKDLRAKLANGLGS 586
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 156/397 (39%), Gaps = 55/397 (13%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHIGGL 121
P I +TSGTTG PK +I A + L VG +G +V L PL H+ G
Sbjct: 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211
Query: 122 SSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
+ + A L + +V + +F AL+ V+Q VTSL P + LA +
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKL 271
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG--- 237
DS++ + G +P +++ P K ++AYG TE +SL T PG
Sbjct: 272 DSLRHVTFAGATMPDAVLETVHQHLPGEK-VNAYGTTEAMNSLYMRQPKTGTEMAPGFFS 330
Query: 238 --QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 295
++ + G V + +G EL V + S+ VG
Sbjct: 331 EVRIVRIGGGVDEIVANGEEG----------ELIVAASDSAFVG---------------- 364
Query: 296 FLAKPSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
+L +P + ++ W V ++GR + I SGGEN++P E+E VL
Sbjct: 365 YLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTA 424
Query: 353 PXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREK 412
P A+ R + V ACV R S D CR
Sbjct: 425 PGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSS 468
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449
L FK P+ + + + P + K+ R ++ ++V S
Sbjct: 469 ELADFKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 155/397 (39%), Gaps = 55/397 (13%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHIGGL 121
P I +TSGTTG PK +I A + L VG +G +V L PL H+ G
Sbjct: 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211
Query: 122 SSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
+ + A L + +V + +F AL+ V+Q VTSL P + LA +
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKL 271
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG--- 237
DS++ + G +P +++ P K ++ YG TE +SL T PG
Sbjct: 272 DSLRHVTFAGATMPDAVLETVHQHLPGEK-VNGYGTTEAMNSLYMRQPKTGTEMAPGFFS 330
Query: 238 --QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 295
++ + G V + +G EL V + S+ VG
Sbjct: 331 EVRIVRIGGGVDEIVANGEEG----------ELIVAASDSAFVG---------------- 364
Query: 296 FLAKPSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
+L +P + ++ W V ++GR + I SGGEN++P E+E VL
Sbjct: 365 YLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTA 424
Query: 353 PXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREK 412
P A+ R + V ACV R S D CR
Sbjct: 425 PGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSS 468
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449
L FK P+ + + + P + K+ R ++ ++V S
Sbjct: 469 ELADFKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 155/397 (39%), Gaps = 55/397 (13%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHIGGL 121
P I +TSGTTG PK +I A + L VG +G +V L PL H+ G
Sbjct: 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211
Query: 122 SSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
+ + A L + +V I +F AL+ V+Q VTSL P + LA +
Sbjct: 212 FAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKL 271
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG--- 237
DS++ + G +P +++ P K ++ YG TE +SL T PG
Sbjct: 272 DSLRHVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPKTGTEMAPGFFS 330
Query: 238 --QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 295
++ + G V + +G EL V + S+ VG
Sbjct: 331 EVRIVRIGGGVDEIVANGEEG----------ELIVAASDSAFVG---------------- 364
Query: 296 FLAKPSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
+L +P + ++ W V ++GR + I SGGEN++P E+E VL
Sbjct: 365 YLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTA 424
Query: 353 PXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREK 412
P A+ R + V ACV R S D CR
Sbjct: 425 PGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSS 468
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449
L FK P+ + + + P + K+ R ++ ++V S
Sbjct: 469 ELADFKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 155/397 (39%), Gaps = 55/397 (13%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHIGGL 121
P I +TSGTTG PK +I A + L VG +G +V L PL H+ G
Sbjct: 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211
Query: 122 SSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
+ + A L + +V + +F AL+ V+Q VTSL P + LA +
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKL 271
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG--- 237
DS++ + G +P +++ P K ++ YG TE +SL T PG
Sbjct: 272 DSLRHVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPKTGTEMAPGFFS 330
Query: 238 --QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 295
++ + G V + +G EL V + S+ VG
Sbjct: 331 EVRIVRIGGGVDEIVANGEEG----------ELIVAASDSAFVG---------------- 364
Query: 296 FLAKPSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
+L +P + ++ W V ++GR + I SGGEN++P E+E VL
Sbjct: 365 YLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTA 424
Query: 353 PXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREK 412
P A+ R + V ACV R S D CR
Sbjct: 425 PGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSS 468
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449
L FK P+ + + + P + K+ R ++ ++V S
Sbjct: 469 ELADFKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 154/397 (38%), Gaps = 55/397 (13%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHIGGL 121
P I +TSGTTG PK +I A + L VG +G +V L PL H+ G
Sbjct: 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGF 211
Query: 122 SSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
+ + A L + +V + +F AL+ V+Q VTSL P + LA +
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKL 271
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG--- 237
DS++ + G P +++ P K ++ YG TE +SL T PG
Sbjct: 272 DSLRHVTFAGATXPDAVLETVHQHLPGEK-VNIYGTTEAXNSLYXRQPKTGTEXAPGFFS 330
Query: 238 --QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 295
++ + G V + +G EL V + S+ VG
Sbjct: 331 EVRIVRIGGGVDEIVANGEEG----------ELIVAASDSAFVG---------------- 364
Query: 296 FLAKPSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
+L +P + ++ W V ++GR + I SGGEN++P E+E VL
Sbjct: 365 YLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTA 424
Query: 353 PXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREK 412
P A+ R + V ACV R S D CR
Sbjct: 425 PGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSS 468
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449
L FK P+ + + + P + K+ R ++ ++V S
Sbjct: 469 ELADFKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 154/397 (38%), Gaps = 55/397 (13%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHIGGL 121
P I +TSGTTG PK +I A + L VG +G +V L PL H+ G
Sbjct: 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211
Query: 122 SSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 180
+ + A L + +V + +F AL+ V+Q VTSL P + LA +
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKL 271
Query: 181 DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG--- 237
DS++ + G +P +++ P K ++ YG TE +SL T PG
Sbjct: 272 DSLRHVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPKTGTEMAPGFFS 330
Query: 238 --QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 295
++ + G V + +G EL V + S+ VG
Sbjct: 331 EVRIVRIGGGVDEIVANGEEG----------ELIVAASDSAFVG---------------- 364
Query: 296 FLAKPSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
+L +P + ++ W V ++GR I SGGEN++P E+E VL
Sbjct: 365 YLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTA 424
Query: 353 PXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREK 412
P A+ R + V ACV R S D CR
Sbjct: 425 PGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSS 468
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449
L FK P+ + + + P + K+ R ++ ++V S
Sbjct: 469 ELADFKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 136/330 (41%), Gaps = 34/330 (10%)
Query: 69 IICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVG--YGEDDVYLHTAPLCHIGGLSSAM 125
+I +SG+TG PKGV + H AL V+ S A+ I G D L P H G+ + +
Sbjct: 199 LIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTL 258
Query: 126 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK 185
L+ G V + +FE + L +++ + + S + VP + + LA + K ++ +
Sbjct: 259 GYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKY--DLSNLHE 316
Query: 186 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 245
I +GG L E+ + F + YG+TET+S++
Sbjct: 317 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL--------------------- 355
Query: 246 VTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLAK 299
+TP +P VGK P E KV + G + G + RG +M Y + A
Sbjct: 356 ITPKGDDKPG--AVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEAT 413
Query: 300 PSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXX 359
++ + WL + ++V R IK G V P E+E++LLQHP
Sbjct: 414 NALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAG 473
Query: 360 XXXXANARLTEMVVACVRLRESWQWSESNC 389
+ E+ A V L +E
Sbjct: 474 VAGLPDDDAGELPAAVVVLEHGKTMTEKEI 503
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 157/389 (40%), Gaps = 74/389 (19%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLM 129
I FTSGTTG K V + ++ +G+ D +L P+ HI GLS + ++
Sbjct: 168 IMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVI 227
Query: 130 VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNG 189
G + KF ++ L ++ +T + VP + L +++ +++KIL G
Sbjct: 228 EGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL-----MQQGLHEPYNLQKILLG 282
Query: 190 GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPN 249
G L + +++ A + +++GMTET S F TP
Sbjct: 283 GAKLSATMIETALQY--NLPIYNSFGMTETCSQ--------------------FLTATPE 320
Query: 250 SVH-QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV- 307
+H +P VG P+ +V++K+ + G ++ +GA+VM Y P+ TG
Sbjct: 321 MLHARPD--TVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYL-----YPTDLTGTFE 373
Query: 308 --WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXAN 365
+ V + RR I SGGEN+YP ++E V Q P
Sbjct: 374 NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISD-------- 425
Query: 366 ARLTEMVVACV--------RLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGF 417
CV ++ + + SES+ + K+L +
Sbjct: 426 -------AVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYL------------SKHLAKY 466
Query: 418 KAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
K P+ F P TSTGK++R+++ RE
Sbjct: 467 KVPKHFE-KVDTLPYTSTGKLQRNKLYRE 494
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 134/327 (40%), Gaps = 34/327 (10%)
Query: 69 IICFTSGTTGSPKGVVISH-SALIVQSLAKIAIVGYG--EDDVYLHTAPLCHIGGLSSAM 125
+I +SG+TG PKGV + H +A + S A+ I G D L P H G+ + +
Sbjct: 194 LIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL 253
Query: 126 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK 185
L+ G V + +FE + L +++ + + S + VP + + A + K ++ +
Sbjct: 254 GYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY--DLSNLHE 311
Query: 186 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 245
I +GG L E+ + F + YG+TET+S++
Sbjct: 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL--------------------- 350
Query: 246 VTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLAK 299
+TP +P VGK P E KV + G + G + RG +M Y + A
Sbjct: 351 ITPEGDDKPG--AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEAT 408
Query: 300 PSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXX 359
++ + WL + ++V R IK G V P E+E++LLQHP
Sbjct: 409 NALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAG 468
Query: 360 XXXXANARLTEMVVACVRLRESWQWSE 386
+ E+ A V L +E
Sbjct: 469 VAGLPDDDAGELPAAVVVLEHGKTMTE 495
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 134/327 (40%), Gaps = 34/327 (10%)
Query: 69 IICFTSGTTGSPKGVVISH-SALIVQSLAKIAIVGYG--EDDVYLHTAPLCHIGGLSSAM 125
+I +SG+TG PKGV + H +A + S A+ I G D L P H G+ + +
Sbjct: 194 LIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL 253
Query: 126 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK 185
L+ G V + +FE + L +++ + + S + VP + + A + K ++ +
Sbjct: 254 GYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY--DLSNLHE 311
Query: 186 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 245
I +GG L E+ + F + YG+TET+S++
Sbjct: 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL--------------------- 350
Query: 246 VTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLAK 299
+TP +P VGK P E KV + G + G + RG +M Y + A
Sbjct: 351 ITPEGDDKPG--AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEAT 408
Query: 300 PSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXX 359
++ + WL + ++V R IK G V P E+E++LLQHP
Sbjct: 409 NALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAG 468
Query: 360 XXXXANARLTEMVVACVRLRESWQWSE 386
+ E+ A V L +E
Sbjct: 469 VAGLPDDDAGELPAAVVVLEHGKTMTE 495
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 134/327 (40%), Gaps = 34/327 (10%)
Query: 69 IICFTSGTTGSPKGVVISH-SALIVQSLAKIAIVGYG--EDDVYLHTAPLCHIGGLSSAM 125
+I +SG+TG PKGV + H +A + S A+ I G D L P H G+ + +
Sbjct: 199 LIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL 258
Query: 126 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK 185
L+ G V + +FE + L +++ + + S + VP + + A + K ++ +
Sbjct: 259 GYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY--DLSNLHE 316
Query: 186 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 245
I +GG L E+ + F + YG+TET+S++
Sbjct: 317 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL--------------------- 355
Query: 246 VTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLAK 299
+TP +P VGK P E KV + G + G + RG +M Y + A
Sbjct: 356 ITPEGDDKPG--AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEAT 413
Query: 300 PSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXX 359
++ + WL + ++V R IK G V P E+E++LLQHP
Sbjct: 414 NALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAG 473
Query: 360 XXXXANARLTEMVVACVRLRESWQWSE 386
+ E+ A V L +E
Sbjct: 474 VAGLPDDDAGELPAAVVVLEHGKTMTE 500
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/376 (23%), Positives = 144/376 (38%), Gaps = 41/376 (10%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM-L 128
I +TSGTTG KG +SH L SL + + DDV +H P+ H GL A + L
Sbjct: 160 ILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTL 219
Query: 129 MVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN 188
+F+PKF+ L+ + V L VP L R+ K G + ++
Sbjct: 220 FARGSXIFLPKFDPDKILDLXARATV--LXGVPTFYTRLLQSPRLTKETTGH--XRLFIS 275
Query: 189 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 248
G L ++ +E + A ++ YG TET+ + + YD ++P A G P
Sbjct: 276 GSAPLLADTHREWSAKTGHA-VLERYGXTETNXNTS--NPYDGD-----RVPGAVGPALP 327
Query: 249 NSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVW 308
+ GK P +G I +G +V YW S + +
Sbjct: 328 GVSARVTDPETGKELPR----------GDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGF 377
Query: 309 LXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARL 368
V ++GR + +GG NVYP+E+E+ + P +A
Sbjct: 378 FITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADF 437
Query: 369 TEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWRK 428
E V A V + E+ H + L FK P+ V++
Sbjct: 438 GEGVTAVVVRDKGATIDEAQV-----------------LHGLDGQLAKFKXPKK-VIFVD 479
Query: 429 PFPLTSTGKIRRDEVR 444
P + GK++++ +R
Sbjct: 480 DLPRNTXGKVQKNVLR 495
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 131/329 (39%), Gaps = 33/329 (10%)
Query: 69 IICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVGYG--EDDVYLHTAPLCHIGGLSSAM 125
+I +SG+TG PKGV ++H + V+ S + + G D L P H G+ + +
Sbjct: 228 LIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTL 287
Query: 126 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK 185
L G V + +FE + L +++ + + S + VP + + A V K ++ +
Sbjct: 288 GYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKY--DLSNLHE 345
Query: 186 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 245
I +GG L E+ + F + YG+TET+S++
Sbjct: 346 IASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAII--------------------- 384
Query: 246 VTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLAK 299
+TP G C GK P K+ + G + G + +G +M Y + A
Sbjct: 385 ITPRGRDDKPGAC-GKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEAT 443
Query: 300 PSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXX 359
++ + WL ++V R IK G V P E+E++LLQHP
Sbjct: 444 SALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAG 503
Query: 360 XXXXANARLTEMVVACVRLRESWQWSESN 388
+ E+ A V L E +E
Sbjct: 504 VAGIPDPDAGELPAAVVVLEEGKTMTEQE 532
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 130/313 (41%), Gaps = 34/313 (10%)
Query: 50 GYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVG--YGED 106
GY S E +I +SG+TG PKGV ++H ++ + S A+ I G
Sbjct: 177 GYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPG 236
Query: 107 DVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMAD 166
L P H G+ + + L+ G V + KF+ ++ L+ ++ + T++I VP + A
Sbjct: 237 TAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAI 296
Query: 167 LATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFM 226
L + K ++ +I +GG L E+ + F + YG+TET+S++
Sbjct: 297 LNKSELLNKY--DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII-- 352
Query: 227 TLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGR 280
+TP +P GK P + KV S G + G
Sbjct: 353 -------------------ITPEGDDKPG--ASGKVVPLFKAKVIDLDTKKSLGPNRRGE 391
Query: 281 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENV 340
+ +G +M Y + A + E WL + ++V R IK G V
Sbjct: 392 VCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451
Query: 341 YPEEVEAVLLQHP 353
P E+E+VLLQHP
Sbjct: 452 PPAELESVLLQHP 464
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 130/313 (41%), Gaps = 34/313 (10%)
Query: 50 GYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVG--YGED 106
G+ S E +I +SG+TG PKGV ++H ++ + S A+ I G
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPG 236
Query: 107 DVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMAD 166
L P H G+ + + L+ G V + KF+ ++ L+ ++ + TS+I VP + A
Sbjct: 237 TAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296
Query: 167 LATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFM 226
L + K ++ +I +GG L E+ + F + YG+TET+S++
Sbjct: 297 LNKSELLNKY--DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII-- 352
Query: 227 TLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGR 280
+TP +P GK P + KV S G + G
Sbjct: 353 -------------------ITPEGDDKPG--ASGKVVPLFKAKVIDLDTKKSLGPNRRGE 391
Query: 281 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENV 340
+ +G +M Y + A + E WL + ++V R IK G V
Sbjct: 392 VCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451
Query: 341 YPEEVEAVLLQHP 353
P E+E+VLLQHP
Sbjct: 452 PPAELESVLLQHP 464
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 130/313 (41%), Gaps = 34/313 (10%)
Query: 50 GYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVG--YGED 106
G+ S E +I +SG+TG PKGV ++H ++ + S A+ I G
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPG 236
Query: 107 DVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMAD 166
L P H G+ + + L+ G V + KF+ ++ L+ ++ + TS+I VP + A
Sbjct: 237 TAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296
Query: 167 LATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFM 226
L + K ++ +I +GG L E+ + F + YG+TET+S++
Sbjct: 297 LNKSELLNKY--DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII-- 352
Query: 227 TLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGR 280
+TP +P GK P + KV S G + G
Sbjct: 353 -------------------ITPEGDDKPG--ASGKVVPLFKAKVIDLDTKKSLGPNRRGE 391
Query: 281 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENV 340
+ +G +M Y + A + E WL + ++V R IK G V
Sbjct: 392 VCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451
Query: 341 YPEEVEAVLLQHP 353
P E+E+VLLQHP
Sbjct: 452 PPAELESVLLQHP 464
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 146/383 (38%), Gaps = 66/383 (17%)
Query: 12 YLELQHTAIPSL---RWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPE-GA 67
Y ++ +PSL + ++G S F +D+ + PF+ APE GA
Sbjct: 113 YRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLAS----------DTPFS---APEFGA 159
Query: 68 V---IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 124
+I T+ G P+G +IS L++ + + E DV L PL H+ GL
Sbjct: 160 ADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLM 219
Query: 125 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 184
+ + G V KF+ A +E H VT +MA+ A ++ +
Sbjct: 220 LTLQQAGGASVIAAKFDPAQAARDIEAHKVT-------VMAEFAPMLGNILDQAAPAQLA 272
Query: 185 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 244
+ G E ++ + P A + +G +ETS TF D
Sbjct: 273 SLRAVTGLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-------------- 318
Query: 245 NVTPNSVHQP---QGVCV----GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFL 297
P S +P + V V +P P E VG I+ RG V YW+
Sbjct: 319 --RPKSAGRPLFWRTVAVVDAEDRPLPPGE----------VGEIVLRGPTVFKGYWNNAA 366
Query: 298 A-KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGR--IKSGGENVYPEEVEAVLLQHPX 354
A + + G W ++ GR + IK+GGENVYP EVE L QHP
Sbjct: 367 ATQHAFRNG--WHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPA 424
Query: 355 XXXXXXXXXANARLTEMVVA-CV 376
+ + +E + A CV
Sbjct: 425 IADAVVIGVPDPQWSEAIKAVCV 447
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 129/323 (39%), Gaps = 44/323 (13%)
Query: 69 IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAM 127
++ +TSGTTG PKG VI AL A + +DV + PL H+ GL +
Sbjct: 159 LVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGP 218
Query: 128 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLA-TLIRVKKTWKGRDSVKKI 186
L G + +F ++ A + T L VP + +A TL + K + +
Sbjct: 219 LRRGGSVRHLGRFSTEGAARELNDGA-TMLFGVPTMYHRIAETLPADPELAKALAGARLL 277
Query: 187 LNGGGGLP---SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 243
++G LP E + AT ++I YGMTET
Sbjct: 278 VSGSAALPVHDHERIAAATGR----RVIERYGMTET-----------------------L 310
Query: 244 GNVTPNSVHQPQGVCVGKPAPHVELKVCS---------DGSSHVGRILTRGAHVMLRYWD 294
N + + +P+ VG P P VEL++ DG S VG I RG ++ Y +
Sbjct: 311 MNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGES-VGEIQVRGPNLFTEYLN 369
Query: 295 QFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRR-NGRIKSGGENVYPEEVEAVLLQHP 353
+ A + T + + V +VGR+ IKSGG + E+E LL+HP
Sbjct: 370 RPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHP 429
Query: 354 XXXXXXXXXXANARLTEMVVACV 376
+ L E +VA +
Sbjct: 430 EVREAAVTGEPDPDLGERIVAWI 452
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/396 (23%), Positives = 154/396 (38%), Gaps = 54/396 (13%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG--EDDVYLHTAPLCHIGGLSSAMAM 127
+ +T+GTTG PKGVV SH AL++ SLA + G E DV L P+ H+ A
Sbjct: 181 MAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAA 240
Query: 128 LMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 186
+VGA V P+ + S +E + VT VP + LA + + T +++++
Sbjct: 241 TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYL--ESTGHRLKTLRRL 298
Query: 187 LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 246
+ GG P L+ A ++ YG+TETS + Q F
Sbjct: 299 VVGGSAAPRSLI--ARFERMGVEVRQGYGLTETSPVVV----------------QNFVKS 340
Query: 247 TPNSVHQPQGVCV----GKPAPHVELKVCS--------DGSSHVGRILTRGAHVMLRYWD 294
S+ + + + + G P P V L+V DG + +G + +G + Y+
Sbjct: 341 HLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA-LGEVQLKGPWITGGYYG 399
Query: 295 QFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPX 354
A S T + + V + R IKSGGE + ++E L+ HP
Sbjct: 400 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPK 459
Query: 355 XXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNL 414
+ + E +A V R E +H +
Sbjct: 460 VKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEE-----------------LNEHLLKAGF 502
Query: 415 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450
++ P +V + + P TS GK + +R + ++
Sbjct: 503 AKWQLPDAYV-FAEEIPRTSAGKFLKRALREQYKNY 537
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/377 (23%), Positives = 144/377 (38%), Gaps = 41/377 (10%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM-L 128
I +TSGTTG G ++SH L SL + + DDV +H P+ H GL A + L
Sbjct: 160 ILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTL 219
Query: 129 MVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN 188
+F+P F+ L+ + + V L+ VP L R+ G ++ ++
Sbjct: 220 FARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTGH--MRLFIS 275
Query: 189 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 248
G L ++ +E + A ++ YGMTET+ + + YD ++P A G P
Sbjct: 276 GSAPLLADTHREWSAXTGHA-VLERYGMTETNMNTS--NPYDGD-----RVPGAVGPALP 327
Query: 249 NSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVW 308
+ V P EL +G I G +V YW S + +
Sbjct: 328 GVSAR-----VTDPETGXELP-----RGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGF 377
Query: 309 LXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARL 368
V ++GR + +GG NVYP E+E+ + P +A
Sbjct: 378 FITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADF 437
Query: 369 TEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWRK 428
E V A V L + SE+ H + L F P V++
Sbjct: 438 GEGVTAFVVLXREFAPSEAQV-----------------LHGLDGQLAXFXMPXX-VIFVD 479
Query: 429 PFPLTSTGKIRRDEVRR 445
P + G ++ + +R
Sbjct: 480 DLPRNTMGAVQXNVLRE 496
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 126/318 (39%), Gaps = 23/318 (7%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM-L 128
I +TSGTTG G ++SH L SL + + DDV +H P+ H GL A + L
Sbjct: 160 ILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTL 219
Query: 129 MVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN 188
+F+P F+ L+ + + V L+ VP L R+ G ++ ++
Sbjct: 220 FARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTGH--MRLFIS 275
Query: 189 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 248
G L ++ +E + A L YGMTET+ + + YD ++P A G P
Sbjct: 276 GSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTS--NPYDGD-----RVPGAVGPALP 327
Query: 249 NSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVW 308
+ V P EL +G I G +V YW S + +
Sbjct: 328 GVSAR-----VTDPETGXELP-----RGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGF 377
Query: 309 LXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARL 368
V ++GR + +GG NVYP E+E+ + P +A
Sbjct: 378 FITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADF 437
Query: 369 TEMVVACVRLRESWQWSE 386
E V A V L + SE
Sbjct: 438 GEGVTAFVVLXREFAPSE 455
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 46/392 (11%)
Query: 58 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH 117
F+ + A E A + G+TG+PK + +H+ A I G + L P H
Sbjct: 185 FSSTPADEVA-FFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPH 243
Query: 118 IGGLSS--AMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK 175
LSS A+ +L G C V P E + +++H V VP+ A ++ ++K
Sbjct: 244 NFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPS-----AVIMWLEK 298
Query: 176 TWKGRDSVK--KILN-GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPT 232
+ +D ++ K+L GG P L ++ KL +GM E + T + D
Sbjct: 299 AAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDSDEQ 357
Query: 233 LETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRY 292
+ T P + + Q + V G+ +G + TRG + Y
Sbjct: 358 IFTTQGRPISSDDEIKIVDEQYREVPEGE----------------IGMLATRGPYTFCGY 401
Query: 293 WDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
+ V + + N+ +VGR +I GGE + EE+E ++L H
Sbjct: 402 YQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLH 461
Query: 353 PXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREK 412
P E++ A + Q+ E +C R+H E
Sbjct: 462 P----------------EVMHAALVAIVDEQFGEKSC-AFIVSRNPELKAVVLRRHLMEL 504
Query: 413 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444
+ +K P L + PLT+ GK+ + ++R
Sbjct: 505 GIAQYKLPDQIKLI-ESLPLTAVGKVDKKQLR 535
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 122/308 (39%), Gaps = 23/308 (7%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM-L 128
I +TSGTTG G ++SH L SL + + DDV +H P+ H GL A + L
Sbjct: 160 ILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTL 219
Query: 129 MVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN 188
+F+P F+ L+ + + V L+ VP L R+ G ++ ++
Sbjct: 220 FARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTGH--MRLFIS 275
Query: 189 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 248
G L ++ +E + A L YGMTET+ + + YD ++P A G P
Sbjct: 276 GSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTS--NPYDGD-----RVPGAVGPALP 327
Query: 249 NSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVW 308
+ V P EL +G I G +V YW S + +
Sbjct: 328 GVSAR-----VTDPETGXELP-----RGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGF 377
Query: 309 LXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARL 368
V ++GR + +GG NVYP E+E+ + P +A
Sbjct: 378 FITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADF 437
Query: 369 TEMVVACV 376
E V A V
Sbjct: 438 GEGVTAVV 445
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/384 (22%), Positives = 158/384 (41%), Gaps = 51/384 (13%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM 127
+ I +TSGTTG PKGVV +H ++ + + + + D L P+ H+ L++ +
Sbjct: 173 LFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFS 232
Query: 128 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS--VKK 185
M G + +P+F++ + + V VPAI+ +R + D+ +
Sbjct: 233 AMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL----NFMRQVPEFAELDAPDFRY 288
Query: 186 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA--F 243
+ GG +P L+K + +++ Y +TE+ T + L + L G +A F
Sbjct: 289 FITGGAPMPEALIK--IYAAKNIEVVQGYALTESCGGGTLL-LSEDALRKAGSAGRATMF 345
Query: 244 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLA-KPSV 302
+V +V GV H E G ++ + ++ YW++ A + +
Sbjct: 346 TDV---AVRGDDGVI----REHGE-----------GEVVIKSDILLKEYWNRPEATRDAF 387
Query: 303 STGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXX 362
G W +++ R I SGGENVYP E+E+V++ P
Sbjct: 388 DNG--WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIG 445
Query: 363 XANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRL 422
+ + E+ A V + + + SE ++C + L +K P+
Sbjct: 446 LPDEKWGEIAAAIV-VADQNEVSEQQI----------------VEYCGTR-LARYKLPKK 487
Query: 423 FVLWRKPFPLTSTGKIRRDEVRRE 446
V++ + P TGKI + +R +
Sbjct: 488 -VIFAEAIPRNPTGKILKTVLREQ 510
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/384 (23%), Positives = 150/384 (39%), Gaps = 53/384 (13%)
Query: 72 FTSGTTGSPKGVVISHSALI-VQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM-LM 129
++SG+TG PKG V +H+ L L I+G E+DV A L GL + + L
Sbjct: 190 YSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLS 249
Query: 130 VGACHVFIPKFESKSALEA-VEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN 188
VGA + + + + A+ A + +H T VP + A++ L+ + +++ +
Sbjct: 250 VGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANM--LVSPNLPARADVAIRICTS 307
Query: 189 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 248
G LP E+ + T F +++ G TE F++
Sbjct: 308 AGEALPREIGERFTAHF-GCEILDGIGSTEMLH--IFLS--------------------- 343
Query: 249 NSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRYWDQFLAKPSV 302
N + G+P P E+++ D + H VG + +G + YW+ +
Sbjct: 344 NRAGAVEYGTTGRPVPGYEIEL-RDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRAT 402
Query: 303 STGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXX 362
GE W+ GR + +K G+ V P EVE VL+QH
Sbjct: 403 FLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVG 461
Query: 363 XANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRL 422
+ L + A V L+ + SE ++ + L K PR
Sbjct: 462 VDHGGLVK-TRAFVVLKREFAPSEILAEELKAFV--------------KDRLAPHKYPRD 506
Query: 423 FVLWRKPFPLTSTGKIRRDEVRRE 446
V + P T+TGKI+R ++R +
Sbjct: 507 IV-FVDDLPKTATGKIQRFKLREQ 529
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 95/408 (23%), Positives = 156/408 (38%), Gaps = 74/408 (18%)
Query: 65 EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG---EDDVYLHTAPLCHIGG- 120
E ++ F+SGT G PK ++ H L I Y EDD +T G
Sbjct: 225 EDICLVYFSSGTAGFPK--MVEHDN--TYPLGHILTAKYWQNVEDDGLHYTVADSGWGKC 280
Query: 121 LSSAMAMLMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 177
+ + + C VF+ +FE+K+ LE ++ VT+ P I LI+ +
Sbjct: 281 VWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTI---YRFLIKEDLSH 337
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 237
++K + G L E+ F KL+ +G TET ++ +P PG
Sbjct: 338 YNFSTLKYAVVAGEPLNPEVFNRFL-EFTGIKLMEGFGQTETVVTIATFPWMEPK---PG 393
Query: 238 QLPQAFGNVTPNSVHQPQGVCVGKPAP--HVEL--------KVCSDGSSHVGRILTRGAH 287
+GKP P +EL +V +G + + +
Sbjct: 394 S--------------------IGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVG 433
Query: 288 VMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXN----VWLVGRRNGRIKSGGENVYPE 343
+ + Y K T E W + +W VGR + IK+ G V P
Sbjct: 434 LFVHY-----GKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPF 488
Query: 344 EVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXX 403
EVE+ L+QHP + +++ A + L + + S+S ++
Sbjct: 489 EVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNE------------ 536
Query: 404 XXRQHCREKNLTG-FKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450
+ H KN+T +K PR+ + + P T +GKIRR E+R + S
Sbjct: 537 -LQDHV--KNVTAPYKYPRI-IEFVPELPKTISGKIRRVEIRDKDQSQ 580
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/392 (21%), Positives = 144/392 (36%), Gaps = 41/392 (10%)
Query: 58 FTHSWAPEGAV-IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLC 116
FT + +P V + GTTG+PK + +H+ + I + + YL P
Sbjct: 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAA 235
Query: 117 HIGGLSS--AMAMLMVGACHVFIPKFESKSALEAVEQHCVT-SLITVPAIMADLATLIRV 173
H +SS ++ + + G V + +E+H V + + PA+ L LI
Sbjct: 236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEG 295
Query: 174 KKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTL 233
+ + + + K+L GG S + + +L +GM E L T D +
Sbjct: 296 ES--RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE---GLVNYTRLDDSA 350
Query: 234 ETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYW 293
E Q + + V G P P E VGR++TRG + Y+
Sbjct: 351 EKIIHT-QGYPMCPDDEVWVADAE--GNPLPQGE----------VGRLMTRGPYTFRGYY 397
Query: 294 DQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 353
S + + + GR +I GGE + EE+E +LL+HP
Sbjct: 398 KSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHP 457
Query: 354 XXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKN 413
+ + E A + ++E + R+ RE+
Sbjct: 458 AVIYAALVSMEDELMGEKSCAYLVVKEPLR------------------AVQVRRFLREQG 499
Query: 414 LTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445
+ FK P V PLT+ GK+ + ++R+
Sbjct: 500 IAEFKLPDR-VECVDSLPLTAVGKVDKKQLRQ 530
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 129/306 (42%), Gaps = 40/306 (13%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLC-HIGGL 121
PE + FTSG+TG PKGV+ H AL L + G+G D+V+L +P+ GL
Sbjct: 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYAGFGPDEVFLQCSPVSWDAFGL 270
Query: 122 SSAMAMLMVGACHVFIPKFESKSALEA---VEQHCVTSLITVPAIMADLATLIRVKKTWK 178
A+L C + ++ LE V +H VT L + A L + V + +
Sbjct: 271 ELFGALLFGARC--VLQSGQNPDPLEIGELVARHGVTML----QLSASLFNFL-VDEVPE 323
Query: 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238
+ V+ + GG + +A P +L + YG E S+ F T +
Sbjct: 324 AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAE---SMGFTTHH--------- 371
Query: 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHV---ELKVCSDGSSHVGRILTRGAHVMLRY--- 292
G+++ ++ P GV + +V +LK ++G+ +G + GA + Y
Sbjct: 372 -AVVAGDLSGTAL--PIGVPLAGKRAYVLDDDLKPAANGA--LGELYVAGAGLAHGYVSR 426
Query: 293 ----WDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVW-LVGRRNGRIKSGGENVYPEEVEA 347
++F+A P G + V VGR + ++K G V P EVEA
Sbjct: 427 PALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEA 486
Query: 348 VLLQHP 353
L+ HP
Sbjct: 487 RLVGHP 492
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 18/215 (8%)
Query: 43 LTADILKGYSLRSLPFTHSWA---PEGAV------IICFTSGTTGSPKGVVISHSALIVQ 93
L I+ +L+ + FTH PE AV I +TSG+TG+PKGV I+++ L+
Sbjct: 113 LPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV-- 170
Query: 94 SLAKIAIVGYG--EDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK---FESKSALEA 148
S K A+ + V+L+ AP + L+ G I K K +
Sbjct: 171 SFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFAS 230
Query: 149 VEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKA 208
+EQ + + P+ A++ L+ + ++K L G LP+E+ ++ FPKA
Sbjct: 231 LEQSDIQVWTSTPS-FAEMC-LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKA 288
Query: 209 KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 243
+++ YG TE + ++T + + + L+ LP +
Sbjct: 289 TIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 43 LTADILKGYSLRSLPFTH---SWAPEGAV------IICFTSGTTGSPKGVVISHSALIVQ 93
L I+ +L+ + FTH + PE AV I +TSG+TG+PKGV I+++ L+
Sbjct: 113 LPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV-- 170
Query: 94 SLAKIAIVGYG--EDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK---FESKSALEA 148
S K A+ + V+L+ AP + L+ G I K K +
Sbjct: 171 SFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFAS 230
Query: 149 VEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKA 208
+EQ + + P+ A++ L+ + ++K L G LP+E+ ++ FPKA
Sbjct: 231 LEQSDIQVWTSTPS-FAEMC-LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKA 288
Query: 209 KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 243
+++ YG TE + ++T + + + L+ LP +
Sbjct: 289 TIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 93/449 (20%), Positives = 155/449 (34%), Gaps = 74/449 (16%)
Query: 17 HTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGT 76
+ +P+L+ ++ + + +F+ D+ T + LP S + + G+
Sbjct: 145 QSKLPTLK-NIIVAGEAEEFLPLEDLHTEPV-------KLPEVKS---SDVAFLQLSGGS 193
Query: 77 TGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS--AMAMLMVGACH 134
TG K + +H I + + VYL P+ H LSS + +L G
Sbjct: 194 TGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRV 253
Query: 135 VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD---SVKKILNGGG 191
V P A +E+ VT VP + ++ + RD S++ + GG
Sbjct: 254 VLSPSPSPDDAFPLIEREKVTITALVPPL-----AMVWMDAASSRRDDLSSLQVLQVGGA 308
Query: 192 GLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSV 251
+E + F L +GM E G V +
Sbjct: 309 KFSAEAARRVKAVF-GCTLQQVFGMAE-------------------------GLVNYTRL 342
Query: 252 HQPQGVCV---GKP-APHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPSV 302
P+ + V GKP +P+ E +V D V G +LTRG + + Y+ +
Sbjct: 343 DDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAAS 402
Query: 303 STGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXX 362
T + + + + GR +I GGE V EEVE LL HP
Sbjct: 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS 462
Query: 363 XANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRL 422
+ L E + R+ + RE+ L +K P
Sbjct: 463 MPDQFLGERSCVFIIPRDE-----------------APKAAELKAFLRERGLAAYKIPDR 505
Query: 423 FVLWRKPFPLTSTGKIRRDEVRREVMSHL 451
V + + FP T GK+ + +R + L
Sbjct: 506 -VEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 126/333 (37%), Gaps = 69/333 (20%)
Query: 53 LRSLPF--THSWAPEGAVIICFTSGTTGSPKGVVISHSALI------VQSLA-------- 96
L +P+ THS + I FTSGTTG PKGV ISH L+ ++ A
Sbjct: 131 LAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQ 190
Query: 97 KIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTS 156
+A Y D ++ AP +GG A+ +V + K + Q V
Sbjct: 191 MLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVA---------DFKQLFTTIAQLPVGI 241
Query: 157 LITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216
+ P+ AD+A L K ++ G L ++ FP AK+I+AYG
Sbjct: 242 WTSTPS-FADMAMLSDDFCQAK-MPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGP 299
Query: 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS-DG- 274
TE + +L+ + + ++ +LP +G P P + DG
Sbjct: 300 TEATVALSAIEITREMVDNYTRLP------------------IGYPKPDSPTYIIDEDGK 341
Query: 275 ---SSHVGRILTRGAHVMLRYWDQ----------FLAKPSVSTGEVWLXXXXXXXXXXXX 321
S G I+ G V Y + F +P+ TG++
Sbjct: 342 ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIG--------SLTED 393
Query: 322 NVWLV-GRRNGRIKSGGENVYPEEVEAVLLQHP 353
N+ L GR + +IK G + E+V L Q P
Sbjct: 394 NILLYGGRLDFQIKYAGYRIELEDVSQQLNQSP 426
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 87/397 (21%), Positives = 135/397 (34%), Gaps = 63/397 (15%)
Query: 69 IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS--AMA 126
+ + G+TG K + +H I + + VYL P H LSS +
Sbjct: 186 FLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPGVLG 245
Query: 127 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMA---DLATLIRVKKTWKGRDSV 183
+L G V P A +E+ VT VP + D A+ R + S+
Sbjct: 246 VLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLS-----SL 300
Query: 184 KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 243
+ + GG +E + F L +G E
Sbjct: 301 QVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGXAE------------------------- 334
Query: 244 GNVTPNSVHQPQGVCV---GKP-APHVELKVCSDGSSHV-----GRILTRGAHVMLRYWD 294
G V + P+ + V GKP +P+ E +V D V G +LTRG + + Y+
Sbjct: 335 GLVNYTRLDDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYK 394
Query: 295 QFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPX 354
+ T + + + + GR +I GGE V EEVE LL HP
Sbjct: 395 AEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454
Query: 355 XXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNL 414
+ L E + R+ + RE+ L
Sbjct: 455 VHDAAXVSXPDQFLGERSCVFIIPRDE-----------------APKAAELKAFLRERGL 497
Query: 415 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451
+K P V + + FP T GK+ + +R + L
Sbjct: 498 AAYKIPDR-VEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 8/165 (4%)
Query: 68 VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM 127
+ I +TSGTTG PKGVV +H ++ + + + + D L P+ H+ L++ +
Sbjct: 159 LFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFS 218
Query: 128 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS--VKK 185
M G + +P+F++ + + V VPAI+ +R + D+ +
Sbjct: 219 AMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL----NFMRQVPEFAELDAPDFRY 274
Query: 186 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYD 230
+ GG +P L+K + +++ Y +TE+ T + D
Sbjct: 275 FITGGAPMPEALIK--IYAAKNIEVVQGYALTESCGGGTLLLSED 317
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 15/169 (8%)
Query: 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLC-HIGGL 121
PE + FTSG+TG PKGV+ H AL L + G+G D+V+L +P+ GL
Sbjct: 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYAGFGPDEVFLQCSPVSWDAFGL 270
Query: 122 SSAMAMLMVGACHVFIPKFESKSALEA---VEQHCVTSLITVPAIMADLATLIRVKKTWK 178
A+L C + ++ LE V +H VT L + A L + V + +
Sbjct: 271 ELFGALLFGARC--VLQSGQNPDPLEIGELVARHGVTML----QLSASLFNFL-VDEVPE 323
Query: 179 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMT 227
+ V+ + GG + +A P +L + YG E S+ F T
Sbjct: 324 AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAE---SMGFTT 369
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/396 (19%), Positives = 151/396 (38%), Gaps = 39/396 (9%)
Query: 65 EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI-AIVGYGEDDVYLHTAPLCHIGGLSS 123
E + + +TSG+TG+PKGV S + ++ +L + ++DV+ + I G +
Sbjct: 262 EDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTY 321
Query: 124 AMAMLMVGACHVFI----PKFESKSAL-EAVEQHCVTSLITVPAIMADLATLIRVKKTWK 178
+ ++ C + P + + S + +++H VT P L L R ++
Sbjct: 322 VVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTA---LRLLKRAGDSYI 378
Query: 179 GRDSVKKIL---NGGGGLPSELMKEATNSFPKAKL--ISAYGMTETSSSLTFMTLYDPTL 233
S+K + + G + +E+ + + K ++ + Y TE+ S L T
Sbjct: 379 ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTP 438
Query: 234 ETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC-SDGSSHVGRILTRGAHVMLRY 292
PG F + V P EL ++G V A + +
Sbjct: 439 MKPGSASFPFFGID---------AVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKN 489
Query: 293 WDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 352
D++L ++ + +W++GR + + G + E+EA +++
Sbjct: 490 HDRYL-DTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIED 548
Query: 353 PXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQH---C 409
P + + V A V L+ WS + D+ ++H
Sbjct: 549 PIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDE----------LQDIKKHLVFT 598
Query: 410 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445
K++ F AP+L +L P T +GKI R +R+
Sbjct: 599 VRKDIGPFAAPKLIIL-VDDLPKTRSGKIMRRILRK 633
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 117/308 (37%), Gaps = 47/308 (15%)
Query: 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAK-IAIVGYGEDDVYLHTAPLCHIGGLS 122
P I +TSGTTG PKG + +H+ +Q L K + + + + D +L + +
Sbjct: 606 PNDPAYIMYTSGTTGKPKGNITTHAN--IQGLVKHVDYMAFSDQDTFLSVSNYA-FDAFT 662
Query: 123 SAMAMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW- 177
M+ A + I +++ + + Q V + A+ L + W
Sbjct: 663 FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTAL---FNLLTDAGEDWM 719
Query: 178 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 237
KG ++ IL GG +++A KLI+ YG TE + T ++D
Sbjct: 720 KG---LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHD------- 769
Query: 238 QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----HVGRILTRGAHVMLRY 292
P+S+ + +GKP + + + ++ S VG + G V Y
Sbjct: 770 ---------LPDSI---SSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGY 817
Query: 293 -------WDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEV 345
++F+ P GE + GR + ++K G + EE+
Sbjct: 818 VNRADLTKEKFIENP-FKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEI 876
Query: 346 EAVLLQHP 353
E L ++P
Sbjct: 877 EKQLQEYP 884
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 83/386 (21%), Positives = 139/386 (36%), Gaps = 61/386 (15%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLM 129
+ +TSGTTG+PKG ++ H + + + E D A + + L+
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALL 246
Query: 130 VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNG 189
GA I K ++ + EQ+ ITV + + ++ S++ ++
Sbjct: 247 TGASLYIILK-DTINDFVKFEQYINQKEITVITLPPTYVVHLDPERIL----SIQTLITA 301
Query: 190 GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPN 249
G L+ + K I+AYG TET+ T + T ET G
Sbjct: 302 GSATSPSLVNKWKE---KVTYINAYGPTETTIC---ATTWVATKETIG------------ 343
Query: 250 SVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW-------DQFL 297
V +G P + ++ + + G + G + YW +F+
Sbjct: 344 -----HSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFV 398
Query: 298 AKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXX 357
P V GE N+ +GR + ++K G V EEVE++LL+H
Sbjct: 399 DNPFVP-GEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE 457
Query: 358 XXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGF 417
+ + E C ++ SE + RQ E+ L +
Sbjct: 458 TAVSVHKDHQ--EQPYLC-----AYFVSEKHI-----------PLEQLRQFSSEE-LPTY 498
Query: 418 KAPRLFVLWRKPFPLTSTGKIRRDEV 443
P F+ K PLTS GKI R ++
Sbjct: 499 MIPSYFIQLDK-MPLTSNGKIDRKQL 523
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 154/397 (38%), Gaps = 66/397 (16%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYL---HTAPLCHIGGLSS 123
A I FTSGT+G PK S+S+L +++ G D+ T + +I L S
Sbjct: 208 ASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNI--LCS 265
Query: 124 AMAMLMVGACHV--FIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
M +GAC +PKF+ L+ + + + S++ P + L L + ++K
Sbjct: 266 LMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRML--LQQDLSSYKFPH 323
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG---- 237
+ G LP L E + + +YG TET LT M ++ PG
Sbjct: 324 LQNCVTVGESLLPETL--ENWRAQTGLDIRESYGQTET--GLTCMVSKTMKIK-PGYMGT 378
Query: 238 -------QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVML 290
Q+ GNV P G+ V KP ++ S +V A++
Sbjct: 379 AASCYDVQIIDDKGNVLPPGTEGDIGIRV-KP-----IRPIGIFSGYVDNPDKTAANIRG 432
Query: 291 RYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLL 350
+W L + + + +GR + I S G + P EVE L+
Sbjct: 433 DFW--LLGDRGIKDEDGYFQ--------------FMGRADDIINSSGYRIGPSEVENALM 476
Query: 351 QHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCR 410
+HP + E+V A V L Q+ + +Q +QH
Sbjct: 477 EHPAVVETAVISSPDPVRGEVVKAFVVLAS--QFLSHDPEQ---------LTKELQQHV- 524
Query: 411 EKNLTG-FKAPRL--FVLWRKPFPLTSTGKIRRDEVR 444
K++T +K PR FVL P T TGKI+R ++R
Sbjct: 525 -KSVTAPYKYPRKIEFVL---NLPKTVTGKIQRAKLR 557
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 154/397 (38%), Gaps = 66/397 (16%)
Query: 67 AVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYL---HTAPLCHIGGLSS 123
A I FTSGT+G PK S+S+L +++ G D+ T + +I L S
Sbjct: 208 ASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNI--LCS 265
Query: 124 AMAMLMVGACHV--FIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 181
M +GAC +PKF+ L+ + + + S++ P + L L + ++K
Sbjct: 266 LMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRML--LQQDLSSYKFPH 323
Query: 182 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG---- 237
+ G LP L E + + +YG TET LT M ++ PG
Sbjct: 324 LQNCVTVGESLLPETL--ENWRAQTGLDIRESYGQTET--GLTCMVSKTMKIK-PGYMGT 378
Query: 238 -------QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVML 290
Q+ GNV P G+ V KP ++ S +V A++
Sbjct: 379 AASCYDVQIIDDKGNVLPPGTEGDIGIRV-KP-----IRPIGIFSGYVDNPDKTAANIRG 432
Query: 291 RYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLL 350
+W L + + + +GR + I S G + P EVE L+
Sbjct: 433 DFW--LLGDRGIKDEDGYFQ--------------FMGRADDIINSSGYRIGPSEVENALM 476
Query: 351 QHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCR 410
+HP + E+V A V L Q+ + +Q +QH
Sbjct: 477 EHPAVVETAVISSPDPVRGEVVKAFVVLAS--QFLSHDPEQ---------LTKELQQHV- 524
Query: 411 EKNLTG-FKAPRL--FVLWRKPFPLTSTGKIRRDEVR 444
K++T +K PR FVL P T TGKI+R ++R
Sbjct: 525 -KSVTAPYKYPRKIEFVL---NLPKTVTGKIQRAKLR 557
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/409 (21%), Positives = 143/409 (34%), Gaps = 84/409 (20%)
Query: 70 ICFTSGTTGSPKGVVISHSALIVQSL-----AKIAIVGYGEDDVYLHTAPLCHIGGLSSA 124
I +TSG+TG+PKGV IS + L QS A + G ++L+ AP S
Sbjct: 148 IIYTSGSTGNPKGVQISAANL--QSFTDWICADFPVSG---GKIFLNQAPF------SFD 196
Query: 125 MAMLMVGACHVFIPKFESKSALEAVEQHCVT-SLITVPAIMADLATLIRVKKT----WKG 179
++++ + C +S L HCVT + P ++ + +KK+ W
Sbjct: 197 LSVMDLYPC------LQSGGTL-----HCVTKDAVNKPKVLFE-----ELKKSGLNVWTS 240
Query: 180 RDSVKKI------------------LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 221
S ++ + G LP + K FPKAK+ + YG TE +
Sbjct: 241 TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATV 300
Query: 222 SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRI 281
++T + + + + LP F N + G+P P E G I
Sbjct: 301 AVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEE---GQPLPEGE----------KGEI 347
Query: 282 LTRGAHVMLRYWD--QFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGEN 339
+ G V Y + K S W ++ GR + +IK G
Sbjct: 348 VIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYR 407
Query: 340 VYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXX 399
+ EE+E + Q E ++A + E E
Sbjct: 408 MELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAA 467
Query: 400 XXXXXXRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448
+L + PR F+ ++ +T+ GKI R + EV+
Sbjct: 468 -------------SLPAYMIPRKFI-YQDHIQMTANGKIDRKRIGEEVL 502
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 135/365 (36%), Gaps = 42/365 (11%)
Query: 32 SSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALI 91
S D+ RD+ D+++ S P + E + I +TSG+TG PKGV+ + +
Sbjct: 225 SDIDWQEGRDLWWRDLIEKASPEHQP--EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
Query: 92 VQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSAM-AMLMVGACHVF---IPKFESKSAL 146
V + V Y D+Y TA + + G S + L GA + +P + + + +
Sbjct: 283 VYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 147 -EAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 205
+ V++H V L T P + A + K +G D + G G P + EA +
Sbjct: 343 CQVVDKHQVNILYTAPTAIR--ALMAEGDKAIEGTDRSSLRILGSAGEP--INPEAWEWY 398
Query: 206 ------PKAKLISAYGMTETSSSLTFMTLYDP-TLE-TPGQLPQAFGNVTP----NSVHQ 253
K ++ + TET FM P +E G + F V P N H
Sbjct: 399 WKKIGKEKCPVVDTWWQTETGG---FMITPLPGAIELKAGSATRPFFGVQPALVDNEGHP 455
Query: 254 PQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXX 313
+G G V +D R L G H + + ST +
Sbjct: 456 QEGATEGN-------LVITDSWPGQARTLF-GDH-------ERFEQTYFSTFKNMYFSGD 500
Query: 314 XXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVV 373
W+ GR + + G + E+E+ L+ HP +A + +
Sbjct: 501 GARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIY 560
Query: 374 ACVRL 378
A V L
Sbjct: 561 AYVTL 565
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 145/405 (35%), Gaps = 68/405 (16%)
Query: 65 EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 124
E +I +T GTTG PKGV ++H L +L G D + P H
Sbjct: 180 EDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGLV 239
Query: 125 MAMLMVGACHVFIPKFESKSALEAVEQHCVT-SLITVPAIMADLATLIRVKKTWKGRDSV 183
+ VG +V F + E +E++ T S PA+ + TL KT+ S
Sbjct: 240 NLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDW--SY 297
Query: 184 KKILNGGG-----GLPSELMKEATN--SFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 236
K+ G L +L+K A + P+ + +G TE +T +P L
Sbjct: 298 LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT----TNPPLRLD 353
Query: 237 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS--DGSS----HVGRILTRGAHVML 290
Q G P +ELKV S DG G I+ RG ++
Sbjct: 354 KSTTQ------------------GVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFK 395
Query: 291 RYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLV---------GRRNGRIKSGGENVY 341
YW K E W +V + R IK G +
Sbjct: 396 GYW-----KREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIA 450
Query: 342 PEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXX 401
P E+EA+L +H + E+ A + L+ ++ D
Sbjct: 451 PFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDII--------- 501
Query: 402 XXXXRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446
+ RE+ ++G+K R V + + P T++GK+ R +R +
Sbjct: 502 -----EWVRER-ISGYKRVRE-VEFVEELPRTASGKLLRRLLREK 539
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 95/432 (21%), Positives = 157/432 (36%), Gaps = 57/432 (13%)
Query: 32 SSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALI 91
S D+ RD+ D+++ S P + E + I +TSG+TG PKGV+ + +
Sbjct: 225 SDIDWQEGRDLWWRDLIEKASPEHQP--EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
Query: 92 VQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSAM-AMLMVGACHVF---IPKFESKSAL 146
V + V Y D+Y TA + + G S + L GA + +P + + + +
Sbjct: 283 VYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 147 -EAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 205
+ V++H V L T P + A + K +G D + G G P + EA +
Sbjct: 343 CQVVDKHQVNILYTAPTAIR--ALMAEGDKAIEGTDRSSLRILGSVGEP--INPEAWEWY 398
Query: 206 ------PKAKLISAYGMTETSSSLTFMTLYDP-TLE-TPGQLPQAFGNVTP----NSVHQ 253
K ++ + TET FM P +E G + F V P N H
Sbjct: 399 WKKIGKEKCPVVDTWWQTETGG---FMITPLPGAIELKAGSATRPFFGVQPALVDNEGHP 455
Query: 254 PQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXX 313
+G G V +D R L G H + + ST +
Sbjct: 456 QEGATEGN-------LVITDSWPGQARTLF-GDH-------ERFEQTYFSTFKNMYFSGD 500
Query: 314 XXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVV 373
W+ GR + + G + E+E+ L+ HP +A + +
Sbjct: 501 GARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIY 560
Query: 374 ACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWRKPFPLT 433
A V L + S + ++ EK + P + + W P T
Sbjct: 561 AYVTLNHGEEPSPELYAEV--------------RNWVEKEIGPLATPDV-LHWTDSLPKT 605
Query: 434 STGKIRRDEVRR 445
+GKI R +R+
Sbjct: 606 RSGKIMRRILRK 617
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 32 SSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALI 91
S D+ RD+ D+++ S P + E + I +TSG+TG PKGV+ + +
Sbjct: 225 SDIDWQEGRDLWWRDLIEKASPEHQP--EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
Query: 92 VQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSAM-AMLMVGACHVF---IPKFESKSAL 146
V + V Y D+Y TA + + G S + L GA + +P + + + +
Sbjct: 283 VYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 147 -EAVEQHCVTSLITVP----AIMAD 166
+ V++H V L T P A+MA+
Sbjct: 343 CQVVDKHQVNILYTAPTAIRALMAE 367
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 32 SSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALI 91
S D+ RD+ D+++ S P + E + I +TSG+TG PKGV+ + +
Sbjct: 225 SDIDWQEGRDLWWRDLIEKASPEHQP--EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
Query: 92 VQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSAM-AMLMVGACHVF---IPKFESKSAL 146
V + V Y D+Y TA + + G S + L GA + +P + + + +
Sbjct: 283 VYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 147 -EAVEQHCVTSLITVP----AIMAD 166
+ V++H V L T P A+MA+
Sbjct: 343 CQVVDKHQVNILYTAPTAIRALMAE 367
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 32 SSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALI 91
S D+ RD+ D+++ S P + E + I +TSG+TG PKGV+ + +
Sbjct: 225 SDIDWQEGRDLWWRDLIEKASPEHQP--EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
Query: 92 VQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSAM-AMLMVGACHVF---IPKFESKSAL 146
V + V Y D+Y TA + + G S + L GA + +P + + + +
Sbjct: 283 VYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 147 -EAVEQHCVTSLITVP----AIMAD 166
+ V++H V L T P A+MA+
Sbjct: 343 CQVVDKHQVNILYTAPTAIRALMAE 367
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 32 SSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALI 91
S D+ RD+ D+++ S P + E + I +TSG+TG PKGV+ + +
Sbjct: 225 SDIDWQEGRDLWWRDLIEKASPEHQP--EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
Query: 92 VQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSAM-AMLMVGACHVF---IPKFESKSAL 146
V + V Y D+Y TA + + G S + L GA + +P + + + +
Sbjct: 283 VYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 147 -EAVEQHCVTSLITVP----AIMAD 166
+ V++H V L T P A+MA+
Sbjct: 343 CQVVDKHQVNILYTAPTAIRALMAE 367
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 32 SSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALI 91
S D+ RD+ D+++ S P + E + I +TSG+TG PKGV+ + +
Sbjct: 225 SDIDWQEGRDLWWRDLIEKASPEHQP--EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282
Query: 92 VQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSAM-AMLMVGACHVF---IPKFESKSAL 146
V + V Y D+Y TA + + G S + L GA + +P + + + +
Sbjct: 283 VYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 147 -EAVEQHCVTSLITVP----AIMAD 166
+ V++H V L T P A+MA+
Sbjct: 343 CQVVDKHQVNILYTAPTAIRALMAE 367
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 15/170 (8%)
Query: 57 PFTHSWAP--EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAP 114
P T + P E + +TSGTTG+PKGV + H+ ++ ++ + DD +L
Sbjct: 165 PVTGAPGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHS 224
Query: 115 LCHIGGLSSAMAMLMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVP-AIMADLATL 170
L + GA V +P + +++ L + VT + P A +A
Sbjct: 225 LSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAA 284
Query: 171 IRVKKTWKGRD--SVKKILNGGGGLPSELMKEATNSF--PKAKLISAYGM 216
+R GRD ++ ++ GG L + +++ +F + +L++ YG+
Sbjct: 285 VR-----GGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGI 329
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 62 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL 121
+A + I F+SGTTG PK + +H+ + L + + + + +L +PL
Sbjct: 161 FAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQ-SFLAFAPQMRFLVNSPLSFDAAT 219
Query: 122 SSAMAMLMVGACHVF--IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 179
L+ G C V + + + + + S ++ TL+ + G
Sbjct: 220 LEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLF---NTLVDLDPDCLG 276
Query: 180 RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLE 234
++++L GG L ++ A P+ L++ YG TE ++ + D LE
Sbjct: 277 --GLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLE 329
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 74/339 (21%), Positives = 128/339 (37%), Gaps = 64/339 (18%)
Query: 3 VTDESSDSWYLE-------LQHTAIPSLRWHVSL--GSSSSDFVNKRDMLTADILKGYSL 53
VTDE SDS + +A+ + HV+ G S + + D+L D GY+
Sbjct: 119 VTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSII-EVDLLDLDAPNGYTF 177
Query: 54 RSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDD------ 107
+ + + + +TSG+T +P GVV SH + V + ++ + + D
Sbjct: 178 KEDEYPST------AYLQYTSGSTRTPAGVVXSHQNVRV-NFEQLXSGYFADTDGIPPPN 230
Query: 108 -VYLHTAPLCHIGGLSSAMAMLMVGACHV-------FIPKFESKSALEAVEQHCVTSLIT 159
+ P H GL + ++G F+ + L A + H ++
Sbjct: 231 SALVSWLPFYHDXGLVIGICAPILGGYPAVLTSPVSFLQRPARWXHLXASDFHAFSA--- 287
Query: 160 VPAIMADLATLIRVKKTWKGRD--SVKKILNGGGGLPSELMKEATNSFPKAKLIS----- 212
P +LA GRD ++ IL+G + + +K + F + L
Sbjct: 288 APNFAFELAARRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRP 347
Query: 213 AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS 272
+YG+ E T+Y T PGQ P+ T + + G P C+
Sbjct: 348 SYGLAEA-------TVYVAT-SKPGQPPETVDFDT-------ESLSAGHAKP------CA 386
Query: 273 DG--SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWL 309
G +S + L R V + D + P + GE+W+
Sbjct: 387 GGGATSLISYXLPRSPIVRIVDSDTCIECPDGTVGEIWV 425
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 124/332 (37%), Gaps = 50/332 (15%)
Query: 3 VTDESSDSWYLE-------LQHTAIPSLRWHVSL--GSSSSDFVNKRDMLTADILKGYSL 53
VTDE SDS + +A+ + HV+ G S + + D+L D GY+
Sbjct: 119 VTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSII-EVDLLDLDAPNGYTF 177
Query: 54 RSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGED------- 106
+ + + + +TSG+T +P GVV+SH + V + + GY D
Sbjct: 178 KEDEYPST------AYLQYTSGSTRTPAGVVMSHQNVRVN--FEQLMSGYFADTDGIPPP 229
Query: 107 -DVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTS----LITVP 161
+ P H GL + ++G + S A H + S P
Sbjct: 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSAAP 289
Query: 162 AIMADLATLIRVKKTWKGRD--SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219
+LA GRD ++ IL+G + + +K + F + L +
Sbjct: 290 NFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQER--VIRP 347
Query: 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--SSH 277
S L T+Y T PGQ P+ T + + G P C+ G +S
Sbjct: 348 SYWLAEATVYVAT-SKPGQPPETVDFDT-------ESLSAGHAKP------CAGGGATSL 393
Query: 278 VGRILTRGAHVMLRYWDQFLAKPSVSTGEVWL 309
+ +L R V + D + P + GE+W+
Sbjct: 394 ISYMLPRSPIVRIVDSDTCIECPDGTVGEIWV 425
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Query: 75 GTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACH 134
G P+ ++S V+ I E DV+ + L++ L+V A H
Sbjct: 26 GNKTFPQRFLVSDR-FWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEH 84
Query: 135 VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGG--GG 192
+ K A H T L+TV +AD A L+R + G I GG GG
Sbjct: 85 RYYGKSLPFGAQSTQRGH--TELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGG 142
Query: 193 LPSELMK 199
+ S ++
Sbjct: 143 MLSAYLR 149
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 5/127 (3%)
Query: 75 GTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACH 134
G P+ ++S V+ I E DV+ + L++ L+V A H
Sbjct: 23 GNKTFPQRFLVSDR-FWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEH 81
Query: 135 VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGG--GG 192
+ K A H T L+TV +AD A L+R + G I GG GG
Sbjct: 82 RYYGKSLPFGAQSTQRGH--TELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGG 139
Query: 193 LPSELMK 199
S ++
Sbjct: 140 XLSAYLR 146
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 61 SWAP-----EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHT-AP 114
SW P + +TSG+T PKGV +SH L+ +L KI + D+ + + P
Sbjct: 158 SWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLL-DNLNKIFTSFHXNDETIIFSWLP 216
Query: 115 LCHIGGLSSAMAMLMVGA 132
H GL + + G
Sbjct: 217 PHHDXGLIGCILTPIYGG 234
>pdb|4E8B|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsme From
E.Coli
Length = 251
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 265 HVELKVCSDGSSHVGRILTRGAHVMLRYWD 294
H + +C D ++H+GR+L G L+ +D
Sbjct: 15 HSHIALCEDAANHIGRVLRMGPGQALQLFD 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,809,319
Number of Sequences: 62578
Number of extensions: 483515
Number of successful extensions: 1059
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 83
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)