Query 012673
Match_columns 458
No_of_seqs 202 out of 2550
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 14:01:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.9E-65 6.4E-70 521.8 31.8 354 61-457 178-539 (539)
2 2d1s_A Luciferase, luciferin 4 100.0 4.8E-65 1.7E-69 519.6 32.4 347 64-454 191-548 (548)
3 3ni2_A 4-coumarate:COA ligase; 100.0 1.1E-64 3.9E-69 515.9 31.0 351 61-449 174-535 (536)
4 3rix_A Luciferase, luciferin 4 100.0 2.5E-65 8.5E-70 522.4 24.3 413 2-458 126-550 (550)
5 4fuq_A Malonyl COA synthetase; 100.0 5.2E-64 1.8E-68 506.9 30.7 344 61-450 151-501 (503)
6 3g7s_A Long-chain-fatty-acid-- 100.0 5E-64 1.7E-68 512.7 29.7 349 64-450 179-543 (549)
7 1v25_A Long-chain-fatty-acid-C 100.0 6.1E-64 2.1E-68 510.9 26.7 407 2-452 123-539 (541)
8 1t5h_X 4-chlorobenzoyl COA lig 100.0 7.2E-63 2.4E-67 499.1 33.3 343 61-448 149-503 (504)
9 3r44_A Fatty acyl COA syntheta 100.0 9.6E-63 3.3E-67 499.3 34.2 348 60-452 165-516 (517)
10 3ipl_A 2-succinylbenzoate--COA 100.0 1.5E-62 5E-67 496.8 32.9 340 61-450 159-498 (501)
11 3etc_A AMP-binding protein; ad 100.0 1E-62 3.6E-67 504.9 30.9 346 61-449 221-579 (580)
12 3e7w_A D-alanine--poly(phospho 100.0 1.8E-62 6.1E-67 497.1 32.1 355 61-450 139-504 (511)
13 3o83_A Peptide arylation enzym 100.0 4.4E-64 1.5E-68 512.3 19.7 347 61-450 187-541 (544)
14 3nyq_A Malonyl-COA ligase; A/B 100.0 1.2E-62 4E-67 497.0 27.7 344 61-446 151-505 (505)
15 1pg4_A Acetyl-COA synthetase; 100.0 3E-62 1E-66 508.2 31.3 357 61-453 252-625 (652)
16 3fce_A D-alanine--poly(phospho 100.0 1.4E-62 5E-67 498.0 28.1 356 60-450 139-505 (512)
17 3rg2_A Enterobactin synthase c 100.0 1.4E-61 4.8E-66 500.9 33.3 352 61-454 180-539 (617)
18 3c5e_A Acyl-coenzyme A synthet 100.0 1.1E-61 3.8E-66 496.6 32.1 399 2-450 150-563 (570)
19 3ivr_A Putative long-chain-fat 100.0 1E-62 3.5E-67 498.8 23.6 343 60-452 155-504 (509)
20 1ry2_A Acetyl-coenzyme A synth 100.0 1.2E-61 4.2E-66 503.9 28.2 363 61-451 258-639 (663)
21 3l8c_A D-alanine--poly(phospho 100.0 2.9E-61 1E-65 489.6 28.4 361 60-451 140-514 (521)
22 1amu_A GRSA, gramicidin synthe 100.0 2.2E-61 7.4E-66 493.7 27.3 336 61-447 178-527 (563)
23 4gr5_A Non-ribosomal peptide s 100.0 2.8E-62 9.5E-67 501.8 19.8 345 60-446 209-568 (570)
24 3tsy_A Fusion protein 4-coumar 100.0 1.6E-61 5.4E-66 525.3 24.2 360 60-457 220-590 (979)
25 4dg8_A PA1221; ANL superfamily 100.0 1.2E-60 4.1E-65 492.4 26.4 341 61-451 160-515 (620)
26 2v7b_A Benzoate-coenzyme A lig 100.0 8E-60 2.7E-64 479.8 27.8 343 61-446 179-529 (529)
27 4gs5_A Acyl-COA synthetase (AM 100.0 7E-59 2.4E-63 448.1 25.2 317 64-451 36-356 (358)
28 2vsq_A Surfactin synthetase su 100.0 8.3E-58 2.9E-62 508.1 26.4 344 61-449 603-960 (1304)
29 3kxw_A Saframycin MX1 syntheta 100.0 2.3E-57 8E-62 468.0 27.2 372 60-450 162-568 (590)
30 3ite_A SIDN siderophore synthe 100.0 3.4E-57 1.2E-61 463.8 22.9 356 61-450 171-544 (562)
31 3gqw_A Fatty acid AMP ligase; 100.0 1.8E-56 6.2E-61 460.3 25.3 375 61-456 172-570 (576)
32 2y4o_A Phenylacetate-coenzyme 100.0 3.5E-52 1.2E-56 414.2 26.1 333 61-445 88-440 (443)
33 3qov_A Phenylacetate-coenzyme 100.0 3E-51 1E-55 406.6 29.7 326 62-442 82-430 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 4.6E-51 1.6E-55 405.4 28.0 328 61-442 86-432 (437)
35 3t5a_A Long-chain-fatty-acid-- 100.0 1.6E-41 5.4E-46 341.2 17.9 264 61-328 179-480 (480)
36 3hgu_A EHPF; phenazine, antibi 100.0 6.3E-32 2.2E-36 261.8 16.5 233 61-338 87-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 7.2E-16 2.5E-20 120.9 8.1 100 327-441 1-102 (109)
38 3gxs_A Phenylacetate-coenzyme 99.6 2.9E-15 9.8E-20 117.2 8.5 100 327-441 1-102 (109)
39 4eql_A 4-substituted benzoates 98.9 5E-09 1.7E-13 104.5 12.7 63 273-352 381-447 (581)
40 4epl_A Jasmonic acid-amido syn 98.9 3.3E-08 1.1E-12 98.3 16.5 72 274-362 389-472 (581)
41 4b2g_A GH3-1 auxin conjugating 98.8 1.2E-08 4.2E-13 101.8 9.2 62 273-351 393-458 (609)
42 3g7s_A Long-chain-fatty-acid-- 80.7 22 0.00074 35.1 13.5 104 64-170 33-141 (549)
43 3rix_A Luciferase, luciferin 4 79.5 8.4 0.00029 38.2 10.0 87 83-170 49-139 (550)
44 3ni2_A 4-coumarate:COA ligase; 79.2 18 0.00061 35.6 12.3 99 63-169 35-137 (536)
45 3ivr_A Putative long-chain-fat 77.2 21 0.00073 34.7 12.1 97 63-169 19-119 (509)
46 3ezx_A MMCP 1, monomethylamine 76.0 19 0.00064 30.7 9.8 90 107-200 94-194 (215)
47 1v25_A Long-chain-fatty-acid-C 74.6 32 0.0011 33.8 12.6 100 64-169 32-135 (541)
48 2v7b_A Benzoate-coenzyme A lig 71.6 31 0.0011 33.7 11.7 85 84-169 48-136 (529)
49 3r44_A Fatty acyl COA syntheta 70.1 49 0.0017 32.2 12.7 97 63-167 29-129 (517)
50 3etc_A AMP-binding protein; ad 69.4 33 0.0011 34.2 11.3 95 63-162 69-167 (580)
51 3c5e_A Acyl-coenzyme A synthet 69.4 44 0.0015 33.1 12.3 101 63-168 56-161 (570)
52 1ry2_A Acetyl-coenzyme A synth 68.7 37 0.0013 34.4 11.8 96 63-162 95-195 (663)
53 1t5h_X 4-chlorobenzoyl COA lig 68.6 39 0.0013 32.8 11.6 96 64-167 16-117 (504)
54 3t5a_A Long-chain-fatty-acid-- 68.5 46 0.0016 31.8 12.1 103 63-169 37-148 (480)
55 1amu_A GRSA, gramicidin synthe 68.2 45 0.0015 33.0 12.0 94 63-166 52-149 (563)
56 1pg4_A Acetyl-COA synthetase; 65.3 44 0.0015 33.7 11.5 94 64-161 90-187 (652)
57 4fuq_A Malonyl COA synthetase; 65.0 29 0.00098 33.8 9.7 80 84-164 28-111 (503)
58 4gr5_A Non-ribosomal peptide s 62.0 56 0.0019 32.3 11.4 91 63-163 88-182 (570)
59 3o83_A Peptide arylation enzym 61.5 60 0.002 31.8 11.4 90 63-162 43-136 (544)
60 3tsy_A Fusion protein 4-coumar 60.0 33 0.0011 36.7 9.8 98 63-168 74-175 (979)
61 2d1s_A Luciferase, luciferin 4 59.8 34 0.0011 33.7 9.2 86 83-169 51-140 (548)
62 3kxw_A Saframycin MX1 syntheta 58.3 85 0.0029 31.0 12.0 100 63-168 24-130 (590)
63 1mdb_A 2,3-dihydroxybenzoate-A 56.7 78 0.0027 30.9 11.3 78 83-161 49-130 (539)
64 3ipl_A 2-succinylbenzoate--COA 52.7 75 0.0026 30.6 10.3 77 84-161 26-103 (501)
65 3fce_A D-alanine--poly(phospho 51.6 74 0.0025 30.8 10.1 76 84-160 26-105 (512)
66 3l8c_A D-alanine--poly(phospho 51.2 74 0.0025 30.8 10.1 77 84-161 29-109 (521)
67 3ite_A SIDN siderophore synthe 49.1 1.2E+02 0.0039 29.8 11.2 96 63-161 33-134 (562)
68 1y80_A Predicted cobalamin bin 45.2 1.3E+02 0.0045 25.0 9.6 88 107-198 90-186 (210)
69 3gqw_A Fatty acid AMP ligase; 43.8 1.2E+02 0.004 29.7 10.3 85 83-168 48-143 (576)
70 4dg8_A PA1221; ANL superfamily 40.3 2E+02 0.0067 28.7 11.3 88 63-160 40-131 (620)
71 3dzz_A Putative pyridoxal 5'-p 38.2 1.5E+02 0.005 27.1 9.5 32 103-138 106-137 (391)
72 3e7w_A D-alanine--poly(phospho 36.3 1.8E+02 0.006 28.0 10.1 76 83-159 25-105 (511)
73 3rg2_A Enterobactin synthase c 34.7 1.4E+02 0.0049 29.6 9.3 89 64-162 39-131 (617)
74 2i2x_B MTAC, methyltransferase 29.3 2.3E+02 0.008 24.5 8.6 85 108-198 126-219 (258)
75 2bkw_A Alanine-glyoxylate amin 28.4 3.3E+02 0.011 24.5 10.5 45 104-151 84-135 (385)
76 2e7j_A SEP-tRNA:Cys-tRNA synth 25.9 1.7E+02 0.0059 26.3 7.6 45 103-151 90-141 (371)
77 3kgw_A Alanine-glyoxylate amin 25.7 2.6E+02 0.0088 25.2 8.9 56 103-160 95-155 (393)
78 2ch1_A 3-hydroxykynurenine tra 24.8 2.1E+02 0.007 26.1 8.0 52 103-156 90-146 (396)
79 1vjo_A Alanine--glyoxylate ami 23.7 2.3E+02 0.0078 25.8 8.1 50 103-154 106-160 (393)
80 1o69_A Aminotransferase; struc 22.7 1.9E+02 0.0065 26.6 7.3 54 102-159 68-128 (394)
81 2vsq_A Surfactin synthetase su 22.2 3.9E+02 0.013 29.5 10.6 91 63-163 477-571 (1304)
82 3zrp_A Serine-pyruvate aminotr 21.8 2.4E+02 0.0083 25.3 7.8 54 103-158 74-132 (384)
83 3bul_A Methionine synthase; tr 21.7 2.4E+02 0.0083 27.9 7.8 93 107-205 100-202 (579)
84 2huf_A Alanine glyoxylate amin 21.0 2.8E+02 0.0095 25.1 8.1 51 103-155 91-146 (393)
85 3nyq_A Malonyl-COA ligase; A/B 20.8 2.5E+02 0.0086 26.9 7.9 77 83-162 47-124 (505)
86 2trc_P Phosducin, MEKA, PP33; 20.4 16 0.00055 31.1 -0.8 18 73-91 3-20 (217)
87 2yxb_A Coenzyme B12-dependent 20.1 3.3E+02 0.011 21.5 9.9 95 107-209 20-123 (161)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.9e-65 Score=521.80 Aligned_cols=354 Identities=24% Similarity=0.357 Sum_probs=311.0
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH--HHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~--~~~~~l~~G~~~v~~~ 138 (458)
...++|+++++|||||||.||||+++|+++.++.......+++.++|++++.+|++|.+++. .++.+++.|+++++.+
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 257 (539)
T 1mdb_A 178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257 (539)
T ss_dssp CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred CCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC
Confidence 45689999999999999999999999999998888888888999999999999999999985 5889999999999999
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.|+++++|+++++|+++..+++....... .++++|.+++||+++++++.+.+.+.+ ++++++.||+||
T Consensus 258 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE 334 (539)
T 1mdb_A 258 SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD--DLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAE 334 (539)
T ss_dssp SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC--CCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTT
T ss_pred CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCC--CccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCC
Confidence 99999999999999999999999999999887654332 457999999999999999999999988 799999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCC-ceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPH-VELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
++..++. ..... .....++|+|+++ .+++++|++ .|+.|||+++|++++.||
T Consensus 335 ~~~~~~~--~~~~~--------------------~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY 392 (539)
T 1mdb_A 335 GLVNYTR--LDDPE--------------------EIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGY 392 (539)
T ss_dssp SCEEECC--TTSCH--------------------HHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSC
T ss_pred CcccccC--CCCcH--------------------HhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCcccchhh
Confidence 6532221 10000 0012368999975 479999875 578999999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
|++++.|...|..+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.+++.+
T Consensus 393 ~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~ 472 (539)
T 1mdb_A 393 YKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS 472 (539)
T ss_dssp TTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred cCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceE
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
+|++++++. ..+.++++++++++.|+.|++|+.++++ ++||+|++||++|+.|++.+.+.++
T Consensus 473 ~a~vv~~~~-----------------~~~~~~l~~~l~~~~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~~~i~ 534 (539)
T 1mdb_A 473 CVFIIPRDE-----------------APKAAELKAFLRERGLAAYKIPDRVEFV-ESFPQTGVGKVSKKALREAISEKLL 534 (539)
T ss_dssp EEEEEESSS-----------------CCCHHHHHHHHHHTTCCGGGSCSEEEEC-SSCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred EEEEEECCC-----------------CCCHHHHHHHHHhCCCCcccCCCEEEEe-ccCCCCCCcCEeHHHHHHHHHHHHh
Confidence 999998632 1346889999998349999999998775 7899999999999999999999999
Q ss_pred cCCCC
Q 012673 453 SLPSN 457 (458)
Q Consensus 453 ~~~~~ 457 (458)
++|++
T Consensus 535 ~~y~~ 539 (539)
T 1mdb_A 535 AGFKK 539 (539)
T ss_dssp TC---
T ss_pred ccccC
Confidence 99974
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=4.8e-65 Score=519.58 Aligned_cols=347 Identities=26% Similarity=0.344 Sum_probs=304.0
Q ss_pred CCceEEEEeccCCCCCccceecccHHHHHHHHHHHHh---hcCCCCceEEeccchhhHhhhHH-HHHHHhcCceEEecCC
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI---VGYGEDDVYLHTAPLCHIGGLSS-AMAMLMVGACHVFIPK 139 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~ 139 (458)
++|+++++|||||||.||||+++|+++.......... +++.++|++++.+|++|.+++.. ++.++ .|+++++.+.
T Consensus 191 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~ 269 (548)
T 2d1s_A 191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK 269 (548)
T ss_dssp TTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC
T ss_pred CCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC
Confidence 3899999999999999999999999998877766655 67889999999999999999865 55666 9999999999
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.|+++++|+++++|+++..|.+...... ..++++|.+++||+++++++.+.+.+.|+++++++.||+||+
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~ 347 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNK--YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGG--SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGG
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccc--ccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccc
Confidence 999999999999999999999999999987543222 245789999999999999999999999988899999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhhh
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~ 293 (458)
+..++..... . ....++|+|+++++++++|++ .|+.|||+++|++++.|||
T Consensus 348 ~~~~~~~~~~-~----------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~ 404 (548)
T 2d1s_A 348 TSAIIITPEG-D----------------------DKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYV 404 (548)
T ss_dssp SSEEEECCTT-C----------------------CCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEET
T ss_pred cceeeecCcc-c----------------------CCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhc
Confidence 8765442110 0 012368999999999999843 5788999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
++++.+...++.++||+|||+|++++||+++++||+||+||++|++|+|.+||++|.+||+|.+++|++++++.+++.++
T Consensus 405 ~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~ 484 (548)
T 2d1s_A 405 NNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPG 484 (548)
T ss_dssp TCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEE
T ss_pred CChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeE
Confidence 99998888888899999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCe-EEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR-LFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
|+|+++++. ..+.++|++++++ .|+.|++|+ .++++ ++||+|++||++|+.|++++.+.|+
T Consensus 485 a~vv~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~~i~~v-~~lP~t~~GKi~r~~L~~~~~~~i~ 546 (548)
T 2d1s_A 485 AVVVLESGK----------------NMTEKEVMDYVAS-QVSNAKRLRGGVRFV-DEVPKGLTGKIDGRAIREILKKPVA 546 (548)
T ss_dssp EEEEECTTC----------------CCCHHHHHHHHHT-TSCGGGSCTTCEEEC-SSCCBCTTSCBCHHHHHHHHHSCC-
T ss_pred EEEEEcCCC----------------CCCHHHHHHHHHH-hccccccccccEEEc-cCCCCCCcchhHHHHHHHHHhhhhh
Confidence 999987652 1456789999998 799999999 77765 7899999999999999999999888
Q ss_pred cC
Q 012673 453 SL 454 (458)
Q Consensus 453 ~~ 454 (458)
+|
T Consensus 547 ~~ 548 (548)
T 2d1s_A 547 KM 548 (548)
T ss_dssp --
T ss_pred cC
Confidence 75
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.1e-64 Score=515.89 Aligned_cols=351 Identities=30% Similarity=0.453 Sum_probs=306.0
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHH----hhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEE
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA----IVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHV 135 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v 135 (458)
...++|+++|+|||||||.||||+++|+++......... .+++.++|++++.+|++|.+++ ..++.++..|++++
T Consensus 174 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v 253 (536)
T 3ni2_A 174 DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPIL 253 (536)
T ss_dssp CCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEE
T ss_pred CCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEE
Confidence 457899999999999999999999999999877665543 3467889999999999999998 45678999999999
Q ss_pred ecCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccc
Q 012673 136 FIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 215 (458)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 215 (458)
+.+.+++..+++.|+++++|++.++|+++..+++...... ..++++|.+++||+++++++.+.+++.||++++++.||
T Consensus 254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 331 (536)
T 3ni2_A 254 IMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK--HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG 331 (536)
T ss_dssp ECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGG--SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred EcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccccc--CCCccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence 9999999999999999999999999999999987643332 24578999999999999999999999998999999999
Q ss_pred cccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccc
Q 012673 216 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVM 289 (458)
Q Consensus 216 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~ 289 (458)
+||++.+++.+........ ....+++|+|+++++++|+|++ .|+.|||+++|++++
T Consensus 332 ~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~ 393 (536)
T 3ni2_A 332 MTEAGPVLAMCLAFAKEPF------------------DIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIM 393 (536)
T ss_dssp CGGGSSEEEECGGGSSSCC------------------CCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSC
T ss_pred ccccchhhhcccccCCccc------------------cCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccc
Confidence 9999876654432211100 0122368999999999999954 578899999999999
Q ss_pred hhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCc
Q 012673 290 LRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 369 (458)
Q Consensus 290 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 369 (458)
.|||++++.+...++.++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++..+
T Consensus 394 ~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g 473 (536)
T 3ni2_A 394 KGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG 473 (536)
T ss_dssp SEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred hhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCC
Confidence 99999999999889899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 370 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 370 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
+.++|++++.++. ..+.++|++++++ .|+.|++|+.++++ ++||+|++||++|+.|++++++
T Consensus 474 ~~~~a~vv~~~~~----------------~~~~~~l~~~l~~-~l~~~~~p~~i~~v-~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 474 EVPVAFVVKSEKS----------------QATEDEIKQYISK-QVIFYKRIKRVFFI-EAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EEEEEEEEECTTC----------------CCCHHHHHHHHHT-TSCGGGCCSEEEEC-SCCCBCTTSCBCHHHHHTC---
T ss_pred ceeEEEEEecCCC----------------CCCHHHHHHHHHH-hccCCccccEEEEE-ecCCCCCCCCeeHHHHHHHhcc
Confidence 9999999987652 2456889999998 69999999987775 7899999999999999988753
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.5e-65 Score=522.40 Aligned_cols=413 Identities=24% Similarity=0.329 Sum_probs=226.4
Q ss_pred cccccccchhhhhhccccCCCcceEEeeCCCCcc--hhhhhhhhhhcccccCcccccCCCCCCCCCceEEEEeccCCCCC
Q 012673 2 LVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSD--FVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGS 79 (458)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~ 79 (458)
+|+++...+....+ ...+|.++.+++++..... ......++....................++|+++|+|||||||.
T Consensus 126 vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~ 204 (550)
T 3rix_A 126 VFVSKKGLQKILNV-QKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGL 204 (550)
T ss_dssp EEECGGGHHHHHHH-HHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----C
T ss_pred EEEcHHHHHHHHHH-HhhCCCcceEEEEcCCccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccC
Confidence 45555555555444 4456777777776653211 11111111111000000000111112246899999999999999
Q ss_pred ccceecccHHHHHHHHHHHHh---hcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCChHHHHHHHHHhcceE
Q 012673 80 PKGVVISHSALIVQSLAKIAI---VGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTS 156 (458)
Q Consensus 80 PK~v~~sh~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~ 156 (458)
||||+++|+++.......... +++.++|++++.+|++|.+|+...+.++..|+++++.+.+++..+++.|+++++|+
T Consensus 205 PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~ 284 (550)
T 3rix_A 205 PKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQS 284 (550)
T ss_dssp CCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSE
T ss_pred cchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeE
Confidence 999999999998776665544 46788999999999999999988889999999999999999999999999999999
Q ss_pred EeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCC
Q 012673 157 LITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 236 (458)
Q Consensus 157 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~ 236 (458)
++++|+++..|++....... .++++|.+++||+++++++.+.+.+.|+...+++.||+||+++.++......
T Consensus 285 ~~~~P~~~~~l~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~------ 356 (550)
T 3rix_A 285 ALLVPTLFSFFAKSTLIDKY--DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD------ 356 (550)
T ss_dssp EEECHHHHHHHHHCCGGGGS--CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTC------
T ss_pred EEeCcHHHHHHHhCcccccc--CcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCC------
Confidence 99999999999876543332 4578999999999999999999999995446999999999987655432211
Q ss_pred CCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEe
Q 012673 237 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLD 310 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~ 310 (458)
...+++|+|+++++++|+|++ .|+.|||+++|++++.|||++++.+...++.+|||+
T Consensus 357 -----------------~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~ 419 (550)
T 3rix_A 357 -----------------DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLH 419 (550)
T ss_dssp -----------------CCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred -----------------CCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCee
Confidence 022379999999999999954 478899999999999999999999998888899999
Q ss_pred cCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccccccccccc
Q 012673 311 TGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCD 390 (458)
Q Consensus 311 TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 390 (458)
|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.+++.++++++++++.
T Consensus 420 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~-------- 491 (550)
T 3rix_A 420 SGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK-------- 491 (550)
T ss_dssp EEEEEEECTTCCEEEC----------------------------------------------------------------
T ss_pred cCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ccchhhhhhhhHHHHHHHhhhcccccccCCe-EEEEeeCCCCCCCcccchHHHHHHHHHHHhhcCCCCC
Q 012673 391 QSSKNKELLLSSEVLRQHCREKNLTGFKAPR-LFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 458 (458)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~~~~~~~ 458 (458)
..+.+++++++++ .+++|+.|. .+++ +++||+|++||++|+.|++++.+..+.-+++|
T Consensus 492 --------~~~~~~l~~~~~~-~l~~~~~~~~~i~~-v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~l 550 (550)
T 3rix_A 492 --------TMTEKEIVDYVAS-QVTTAKKLRGGVVF-VDEVPKGLTGKLDARKIREILIKAKKGGKSKL 550 (550)
T ss_dssp ---------------------------------------------------------------------
T ss_pred --------CCCHHHHHHHHHH-hcccccccCCceEE-EeecCCCCCcceeHHHHHHHHHhhccccccCC
Confidence 2456789999988 688887665 4555 48899999999999999999998877666554
No 5
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=5.2e-64 Score=506.91 Aligned_cols=344 Identities=27% Similarity=0.447 Sum_probs=303.6
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
...++|+++|+|||||||.||||+++|+++.++.......+++.++|++++.+|++|.+|+ ...+.+++.|+++++.+.
T Consensus 151 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 230 (503)
T 4fuq_A 151 DRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPK 230 (503)
T ss_dssp CCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSS
T ss_pred CCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCC
Confidence 4568999999999999999999999999999988888889999999999999999999997 456788999999999999
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.++ ++|+++++|+++..+++...... ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||+
T Consensus 231 ~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 305 (503)
T 4fuq_A 231 FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTK--ETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTET 305 (503)
T ss_dssp CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCST--TTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTT
T ss_pred CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccc--cchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEccccc
Confidence 99999999998 89999999999999987643322 2357899999999999999999999998 7899999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhhh
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYW 293 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy~ 293 (458)
+...+... . . .....++|+|+++++++++|++ .|+.|||+++|++++.|||
T Consensus 306 ~~~~~~~~--~-~--------------------~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~ 362 (503)
T 4fuq_A 306 NMNTSNPY--D-G--------------------DRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYW 362 (503)
T ss_dssp EECBCCCS--S-S--------------------CCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBT
T ss_pred CcccccCC--C-C--------------------CCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhc
Confidence 86532111 0 0 0122369999999999999943 5788999999999999999
Q ss_pred cCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEE
Q 012673 294 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 373 (458)
++++.+...|..++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++
T Consensus 363 ~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~ 442 (503)
T 4fuq_A 363 RMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVT 442 (503)
T ss_dssp TCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEE
T ss_pred CChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 374 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 374 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
+++++.++. ..+.+++++++++ .|+.||+|+.++++ ++||+|++||++|+.|++++.+.
T Consensus 443 a~v~~~~~~----------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 443 AVVVRDKGA----------------TIDEAQVLHGLDG-QLAKFKMPKKVIFV-DDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEEECTTC----------------CCCHHHHHHHHBT-TBCGGGCCSEEEEE-SCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEEeCCCC----------------CCCHHHHHHHHHh-hcccCCCCCEEEEE-CCCCCCcccceeHHHHHHHHHHh
Confidence 999987652 2456789999998 69999999998875 78999999999999999988653
No 6
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5e-64 Score=512.65 Aligned_cols=349 Identities=24% Similarity=0.354 Sum_probs=268.0
Q ss_pred CCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCChH
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESK 143 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~ 143 (458)
++|+++|+|||||||.||||+++|+++..+.......+++.++|++++.+|++|.+++..++.++..|+++++.+.+++.
T Consensus 179 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 258 (549)
T 3g7s_A 179 EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQE 258 (549)
T ss_dssp TTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHH
T ss_pred CCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHH
Confidence 48999999999999999999999999999988888889999999999999999999987788899999999999999999
Q ss_pred HHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhh----CC--CCceeeccccc
Q 012673 144 SALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS----FP--KAKLISAYGMT 217 (458)
Q Consensus 144 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~--~~~i~~~YG~t 217 (458)
.+++.|+++++|+++++|+++..|++..........++++|.+++||+++++++.+.+.+. ++ ++++++.||+|
T Consensus 259 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~T 338 (549)
T 3g7s_A 259 MLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMT 338 (549)
T ss_dssp HHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECG
T ss_pred HHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEecc
Confidence 9999999999999999999999999887665533456799999999999999999999887 52 38999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLR 291 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~g 291 (458)
|++.+++........ ...++|.|+++++++|+|.+ .|+.|||+|+|++++.|
T Consensus 339 E~~~~~~~~~~~~~~----------------------~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~G 396 (549)
T 3g7s_A 339 EACPMVTTNPPLRLD----------------------KSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG 396 (549)
T ss_dssp GGSSEEEECCGGGGG----------------------GTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSE
T ss_pred ccchhhhcCCccccC----------------------cCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhh
Confidence 998766543321110 12258999999999999943 57899999999999999
Q ss_pred hhcCcCCCCcccC--CCc--eEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCC
Q 012673 292 YWDQFLAKPSVST--GEV--WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 367 (458)
Q Consensus 292 y~~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 367 (458)
||++++.+...|. .+| ||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.
T Consensus 397 Y~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 476 (549)
T 3g7s_A 397 YWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEE 476 (549)
T ss_dssp ETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC--
T ss_pred hCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccc
Confidence 9999999888763 455 999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHH
Q 012673 368 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV 447 (458)
Q Consensus 368 ~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~ 447 (458)
.++.++|+++++++.. ...+.++|++++++ .|+.|++|+.++++ ++||+|++||++|+.|++++
T Consensus 477 ~g~~~~a~vv~~~~~~--------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~~ 540 (549)
T 3g7s_A 477 AGEVPKAFIVLKPEYR--------------GKVDEEDIIEWVRE-RISGYKRVREVEFV-EELPRTASGKLLRRLLREKE 540 (549)
T ss_dssp ----CEEEEEECSTTT--------------TSCCHHHHHHHHHT-TCC-----CCCCEE-EECC----------------
T ss_pred cCceEEEEEEECCCcc--------------CcCCHHHHHHHHHH-hccCcccceEEEEe-ccCCCCCCcCEeHHHHHHHh
Confidence 9999999999876521 12457899999998 69999999987775 67999999999999999998
Q ss_pred HHH
Q 012673 448 MSH 450 (458)
Q Consensus 448 ~~~ 450 (458)
.+.
T Consensus 541 ~~~ 543 (549)
T 3g7s_A 541 AEG 543 (549)
T ss_dssp ---
T ss_pred hcc
Confidence 764
No 7
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=6.1e-64 Score=510.89 Aligned_cols=407 Identities=25% Similarity=0.351 Sum_probs=287.3
Q ss_pred cccccccchhhhhhccccCCCcceEEeeCCCCcchhhhhhhhhhcccccCcccccCCCCCCCCCceEEEEeccCCCCCcc
Q 012673 2 LVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPK 81 (458)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK 81 (458)
+|+++.+.+.+..+ ...+|.++.++.+++.... ....++.+..... + ....+++|+++|+|||||||.||
T Consensus 123 vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~-~~~~~~~~~a~i~~TSGTTG~PK 192 (541)
T 1v25_A 123 LLFDPNLLPLVEAI-RGELKTVQHFVVMDEKAPE-----GYLAYEEALGEEA---D-PVRVPERAACGMAYTTGTTGLPK 192 (541)
T ss_dssp EEECGGGHHHHHHH-GGGCSSCCEEEESSSCCCT-----TCEEHHHHCCSCC---C-CCCCCTTSEEEEEEECSSSSSCE
T ss_pred EEEChhHHHHHHHH-HhhCCCccEEEEecCCCCc-----ccccHHHHhhccC---C-cccCCCCCcEEEEECCCCCCCCc
Confidence 45566555554444 3456667666666543211 0111111111110 1 13456799999999999999999
Q ss_pred ceecccHHHHHHHHHH--HHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CChHHHHHHHHHhcceEEe
Q 012673 82 GVVISHSALIVQSLAK--IAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLI 158 (458)
Q Consensus 82 ~v~~sh~~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~ 158 (458)
||+++|+++..+.... ...+++.++|++++.+|++|.+++..++.+++.|+++++.+. +++..+++.|+++++|+++
T Consensus 193 gV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 272 (541)
T 1v25_A 193 GVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272 (541)
T ss_dssp EEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEE
T ss_pred EeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEe
Confidence 9999999997665542 245678899999999999999998777889999999999874 7999999999999999999
Q ss_pred echHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCCCC
Q 012673 159 TVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 238 (458)
Q Consensus 159 ~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~ 238 (458)
++|+++..|++....... .++++|.+++||+++++++.+.+ +.+ ++++++.||+||++.+++............
T Consensus 273 ~~P~~~~~l~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~-- 346 (541)
T 1v25_A 273 GVPTVWLALADYLESTGH--RLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLS-- 346 (541)
T ss_dssp ECHHHHHHHHHHHHHHTC--CCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSC--
T ss_pred cchHHHHHHHhhhhccCC--cchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceecccccccccccC--
Confidence 999999999987654432 35789999999999999999999 667 899999999999987655432211000000
Q ss_pred CCccccccCCCCCCCCCceEecccCCCceEEEecCCC-------CCccEEEEeccccchhhhcCcCCCCcccCCCceEec
Q 012673 239 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-------SHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDT 311 (458)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~-------~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T 311 (458)
.. .......++|+|+++++++|+|++. ++.|||+++|++++.|||++++.|...+..+|||+|
T Consensus 347 -~~---------~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~T 416 (541)
T 1v25_A 347 -EE---------EKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 416 (541)
T ss_dssp -HH---------HHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEE
T ss_pred -cc---------ccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEc
Confidence 00 0000123589999999999999751 368999999999999999999999888888999999
Q ss_pred CceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccccccccccccc
Q 012673 312 GDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQ 391 (458)
Q Consensus 312 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~ 391 (458)
||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.+++.++|++++...
T Consensus 417 GDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~---------- 486 (541)
T 1v25_A 417 GDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGE---------- 486 (541)
T ss_dssp EEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------------
T ss_pred CCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999987621
Q ss_pred cchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 392 SSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
..+.+++++++++..|+.|++|+.++++ ++||+|++||++|+.|++++.+.++
T Consensus 487 -------~~~~~~l~~~~~~~~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 487 -------KPTPEELNEHLLKAGFAKWQLPDAYVFA-EEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp ---------------------CCCTTTSCSBC---------------CCTTHHHHSTTSSC
T ss_pred -------CCCHHHHHHHHHhccCccccCCcEEEEe-CCCCCCCccCeeHHHHHHHHHHhhC
Confidence 1345678888876359999999998775 7899999999999999999876654
No 8
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=7.2e-63 Score=499.10 Aligned_cols=343 Identities=28% Similarity=0.454 Sum_probs=298.4
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcC--CCCceEEeccchhhHhhh-HHHHHHHhcCceEEec
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY--GEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFI 137 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~ 137 (458)
...++|+++|+|||||||.||||+++|+++..........+++ .++|++++.+|++|.+++ ..++.++..|+++++.
T Consensus 149 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 228 (504)
T 1t5h_X 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV 228 (504)
T ss_dssp CCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEEC
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeC
Confidence 4568999999999999999999999999998888777777888 789999999999999998 5678999999999999
Q ss_pred CCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 138 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 138 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
+.+++..+++.|+++++|+++++|+++..|++..........++++|.+++||+++++++.+.+.+.| ++++++.||+|
T Consensus 229 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~T 307 (504)
T 1t5h_X 229 EEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTT 307 (504)
T ss_dssp SSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEET
T ss_pred CCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeeccc
Confidence 99999999999999999999999999999988753211222457899999999999999999999999 68999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC--------CCCccEEEEe-cccc
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------SSHVGRILTR-GAHV 288 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~--------~~~~Gel~v~-g~~~ 288 (458)
|++. .. ... .. ..+++|.|.++++++++|.+ .|+.|||+++ |+++
T Consensus 308 E~~~-~~-~~~-~~-----------------------~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~ 361 (504)
T 1t5h_X 308 EAMN-SL-YMR-QP-----------------------KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSA 361 (504)
T ss_dssp TTEE-EE-EEE-SC-----------------------SSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTS
T ss_pred cccc-cc-ccc-CC-----------------------CCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCcee
Confidence 9932 22 111 10 12258999999999999864 3678999999 8999
Q ss_pred chhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCC
Q 012673 289 MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL 368 (458)
Q Consensus 289 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 368 (458)
+.|||++++.+.+.+ .+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.+
T Consensus 362 ~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~ 440 (504)
T 1t5h_X 362 FVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRW 440 (504)
T ss_dssp CCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSS
T ss_pred eceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCC
Confidence 999999999888877 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 369 TEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 369 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
++.++|+|+++++. ..+.+++++++++..|+.||+|+.++++ ++||+|++||++|+.|++++.
T Consensus 441 g~~~~a~vv~~~~~----------------~~~~~~l~~~~~~~~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 441 GQSVTACVVPRLGE----------------TLSADALDTFCRSSELADFKRPKRYFIL-DQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp SEEEEEEEEECTTC----------------CCCHHHHHHHHHTSSCCGGGSCSEEEEC-SCCCBCTTSCBCHHHHHHHHC
T ss_pred CcEEEEEEEecCCc----------------CcCHHHHHHHHhhccCcccccceEEEEh-hhCCCCCCCCEeHHHHHHHhc
Confidence 99999999987652 1456789999986359999999998875 789999999999999999874
No 9
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=9.6e-63 Score=499.33 Aligned_cols=348 Identities=24% Similarity=0.449 Sum_probs=303.1
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
....++|+++|+|||||||.||||+++|+++..+.......+++.++|++++.+|++|.+++...+.+++.|+++++.+.
T Consensus 165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~ 244 (517)
T 3r44_A 165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQ 244 (517)
T ss_dssp CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCC
Confidence 34578999999999999999999999999999888888888999999999999999999999776666669999999999
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.|+++++|++.++|+++..|.+....... ..+++|.+++||+++++++.+.+.+. ++++++.||+||+
T Consensus 245 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~ 320 (517)
T 3r44_A 245 FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAEL--DAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTES 320 (517)
T ss_dssp CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHC--CCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGG
T ss_pred CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccC--CCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeeccccc
Confidence 9999999999999999999999999999887654433 45789999999999999999999886 7999999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC----CCCccEEEEeccccchhhhcC
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHVGRILTRGAHVMLRYWDQ 295 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----~~~~Gel~v~g~~~~~gy~~~ 295 (458)
+..++........ ....++|+|+++++++++|++ +...|||+++|++++.|||++
T Consensus 321 ~~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g~~v~~GY~~~ 379 (517)
T 3r44_A 321 CGGGTLLLSEDAL---------------------RKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNR 379 (517)
T ss_dssp TTCEEEECGGGTT---------------------TTTTCCBEECTTEEEEEECTTSCEESSEEEEEEEEETTSCSEETTC
T ss_pred ccceeecCCcccc---------------------ccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEEeCcchhhhhCCC
Confidence 8766554322111 022358999999999999876 222799999999999999999
Q ss_pred cCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEE
Q 012673 296 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVAC 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~ 375 (458)
++.+...| .++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.+++.++++
T Consensus 380 p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~ 458 (517)
T 3r44_A 380 PEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAI 458 (517)
T ss_dssp HHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEE
Confidence 99888877 57999999999999999999999999999999999999999999999999999999999999989988888
Q ss_pred EEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 376 VRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 376 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
+ +.++. ..+.++|++++++ .|+.|++|+.++++ ++||+|++||++|+.|++++.+.+.
T Consensus 459 v-~~~~~----------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 459 V-VADQN----------------EVSEQQIVEYCGT-RLARYKLPKKVIFA-EAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp E-EECTT----------------TCCHHHHHHHHHH-HSCGGGSCSEEEEC-SCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred E-ECCCC----------------CCCHHHHHHHHHH-hCCCCCCCCEEEEE-CCCCCCCCcCccHHHHHHHHHhhcc
Confidence 8 44331 2456889999998 69999999998775 7899999999999999999987654
No 10
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.5e-62 Score=496.77 Aligned_cols=340 Identities=28% Similarity=0.420 Sum_probs=286.9
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKF 140 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~ 140 (458)
...++|+++|+|||||||.||||+++|+++..........+++.++|++++.+|++|.+|+..++.+++.|+++++.+.+
T Consensus 159 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~ 238 (501)
T 3ipl_A 159 SFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKF 238 (501)
T ss_dssp CCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSC
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCCC
Confidence 45789999999999999999999999999998888888889999999999999999999998889999999999999999
Q ss_pred ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCc
Q 012673 141 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 220 (458)
Q Consensus 141 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~ 220 (458)
++..+++.|+++++|+++++|+++..|++..... ..++|.+++||+++++++.+.+.+ + ++++++.||+||++
T Consensus 239 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----~~~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~YG~TE~~ 311 (501)
T 3ipl_A 239 NAEQILTMIKNERITHISLVPQTLNWLMQQGLHE-----PYNLQKILLGGAKLSATMIETALQ-Y-NLPIYNSFGMTETC 311 (501)
T ss_dssp CHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS-----CTTCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEEEEGGGT
T ss_pred CHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC-----cCcccEEEEeCCCCCHHHHHHHHH-h-CCCEeccccccccc
Confidence 9999999999999999999999999998764221 237999999999999999999987 4 89999999999998
Q ss_pred cceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcCCCC
Q 012673 221 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~~~~ 300 (458)
+.++........ ....++|.|+++++++++|++.++.|||+++|+.++.|||++++.+.
T Consensus 312 ~~~~~~~~~~~~---------------------~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g~~~~~gY~~~~~~t~ 370 (501)
T 3ipl_A 312 SQFLTATPEMLH---------------------ARPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTG 370 (501)
T ss_dssp EEEEEECHHHHH---------------------HCTTCCBEECTTCEEEEESCCSSCCEEEEEESTTSCSCCSBSTTCCC
T ss_pred cceeecCccccc---------------------cCCCCCCCCCCCcEEEEecCCCCCccEEEEeccchhhhhCcChhhcc
Confidence 654433221100 01225899999999999999999999999999999999999999888
Q ss_pred cccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecc
Q 012673 301 SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE 380 (458)
Q Consensus 301 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~ 380 (458)
. + .+|||+|||+|++++||+++++||+||+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++++...
T Consensus 371 ~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~ 448 (501)
T 3ipl_A 371 T-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSES 448 (501)
T ss_dssp S-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred h-h-cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCC
Confidence 7 3 6799999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 381 SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
. .+.++|++++++ .|+.|++|+.++++ ++||+|++||++|++|++...++
T Consensus 449 ~------------------~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 449 D------------------ISKAQLIAYLSK-HLAKYKVPKHFEKV-DTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp C------------------CCHHHHHHHHHH-HSCGGGSCSEEEEC-SSCC-------------------
T ss_pred C------------------CCHHHHHHHHHh-hCccccCCCEEEEe-cccCCCCCCCEeHHHHhhccccc
Confidence 3 457889999998 69999999998775 78999999999999999987654
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1e-62 Score=504.90 Aligned_cols=346 Identities=24% Similarity=0.340 Sum_probs=282.1
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEec--
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFI-- 137 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~-- 137 (458)
...++|+++|+|||||||.||||+++|.++...........++.+++++++.+|++|..+++ .++.++..|+++++.
T Consensus 221 ~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 300 (580)
T 3etc_A 221 STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDY 300 (580)
T ss_dssp SCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEEC
T ss_pred CCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecC
Confidence 45789999999999999999999999999887777666677889999999999999988775 467889999999887
Q ss_pred CCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 138 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 138 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
..+++..+++.|+++++|+++++|+++..|.+.. .....++++|.+++||+++++++.+++.+.+ ++++++.||+|
T Consensus 301 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~T 376 (580)
T 3etc_A 301 DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQT 376 (580)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC---C---CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCT
T ss_pred CCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc---cccCCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccc
Confidence 5689999999999999999999999999987641 1122457899999999999999999999988 89999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEec-----cc
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRG-----AH 287 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g-----~~ 287 (458)
|++..++...... ...+++|+|+++++++|+|++ .|+.|||+++| ++
T Consensus 377 E~~~~~~~~~~~~-----------------------~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~ 433 (580)
T 3etc_A 377 ETVVTIATFPWME-----------------------PKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVG 433 (580)
T ss_dssp TSSCCEECCTTSC-----------------------CCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTT
T ss_pred cccceeecCCCCC-----------------------CCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCe
Confidence 9986554322110 122369999999999999986 57899999997 78
Q ss_pred cchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCC
Q 012673 288 VMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 367 (458)
Q Consensus 288 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 367 (458)
++.|||++++.+.+.+. +|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++.
T Consensus 434 ~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~ 512 (580)
T 3etc_A 434 LFVHYGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPV 512 (580)
T ss_dssp CCCEETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred eeccccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccC
Confidence 99999999999888874 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHH
Q 012673 368 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV 447 (458)
Q Consensus 368 ~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~ 447 (458)
.++.++|+|++.++.... ....++|++++++ .|++|++|+.++++ ++||+|++||++|+.||+++
T Consensus 513 ~g~~~~a~vv~~~~~~~~-------------~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~sGKi~R~~Lr~~~ 577 (580)
T 3etc_A 513 RGQVIKATIVLTKDYTPS-------------DSLKNELQDHVKN-VTAPYKYPRIIEFV-PELPKTISGKIRRVEIRDKD 577 (580)
T ss_dssp TEEEEEEEEEECTTCCCC-------------HHHHHHHHHHHHH-HSCGGGCCSEEEEE-CC------------------
T ss_pred CCcEEEEEEEECCCCCCC-------------HHHHHHHHHHHHh-hCCCccCCeEEEEe-CCCCCCCCcCCcHHHHHhHh
Confidence 999999999998763211 1235789999998 69999999987775 78999999999999999987
Q ss_pred HH
Q 012673 448 MS 449 (458)
Q Consensus 448 ~~ 449 (458)
.+
T Consensus 578 ~~ 579 (580)
T 3etc_A 578 QS 579 (580)
T ss_dssp --
T ss_pred hc
Confidence 65
No 12
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.8e-62 Score=497.05 Aligned_cols=355 Identities=22% Similarity=0.284 Sum_probs=307.3
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
...++|+++|+|||||||.||||+++|+++..........+++.++|++++.+|++|.+++..++.++..|+++++.+.
T Consensus 139 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 218 (511)
T 3e7w_A 139 WVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKD 218 (511)
T ss_dssp SCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHH
T ss_pred cCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChh
Confidence 4568999999999999999999999999999888888888999999999999999999999889999999999999876
Q ss_pred --CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 140 --FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 140 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
+++..+++.|+++++|+++++|+++..++....... ..++++|.+++||+++++++.+.+.+.|+++++++.||+|
T Consensus 219 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~T 296 (511)
T 3e7w_A 219 AVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ--DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPT 296 (511)
T ss_dssp HHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCST--TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCG
T ss_pred hhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccc--ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccc
Confidence 689999999999999999999999999887543222 2357899999999999999999999999899999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++..++.......... .....++|+|+++++++|+|++ .|+.|||+++|++++.||
T Consensus 297 E~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY 358 (511)
T 3e7w_A 297 EATVAVTSVEITNDVIS------------------RSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGY 358 (511)
T ss_dssp GGSSCSEEEEECHHHHT------------------TCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCB
T ss_pred hheeeeeEEeccccccc------------------cCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecCccChhh
Confidence 99876665433211100 0122358999999999999986 678899999999999999
Q ss_pred hcCcCCCCccc---CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCc
Q 012673 293 WDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 369 (458)
Q Consensus 293 ~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 369 (458)
|++++.+...+ ++..||+|||+|++ +||+++++||+||+||++|++|+|.+||++|.+||+|.+++|++++++..+
T Consensus 359 ~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~ 437 (511)
T 3e7w_A 359 LGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTV 437 (511)
T ss_dssp TTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSC
T ss_pred CCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCc
Confidence 99998888776 23348999999999 589999999999999999999999999999999999999999999988889
Q ss_pred ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHH
Q 012673 370 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 449 (458)
Q Consensus 370 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 449 (458)
+.+++++++.++.... .....+++++++++ .|+.|++|+.++++ ++||+|++||++|+.|++.+.+
T Consensus 438 ~~~~a~vv~~~~~~~~------------~~~~~~~l~~~l~~-~L~~~~~P~~~~~v-~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 438 EYLIAAIVPEEHEFEK------------EFQLTSAIKKELAA-SLPAYMIPRKFIYQ-DHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp CEEEEEEEECCCCCSS------------HHHHHHHHHHHHHH-HSCGGGSCSEEEEC-SCCCBCTTSCBCHHHHHHHHHH
T ss_pred eEEEEEEEeccccccc------------hhhHHHHHHHHHHh-hCchhhCCeeEEEe-ccCCCCCCcCccHHHHHhHHhh
Confidence 9999999987652110 11225789999998 69999999998775 7899999999999999999886
Q ss_pred H
Q 012673 450 H 450 (458)
Q Consensus 450 ~ 450 (458)
+
T Consensus 504 ~ 504 (511)
T 3e7w_A 504 R 504 (511)
T ss_dssp H
T ss_pred h
Confidence 5
No 13
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4.4e-64 Score=512.25 Aligned_cols=347 Identities=25% Similarity=0.390 Sum_probs=214.3
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH--HHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~--~~~~~l~~G~~~v~~~ 138 (458)
...++|+++|+|||||||.||||+++|+++..+.......+++.++|++++.+|++|.+++. .++.++..|+++++.+
T Consensus 187 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp CCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred cCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 45689999999999999999999999999999998888899999999999999999998875 5889999999999999
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.|+++++|+++++|+++..+++....... .++++|.+++||+++++++.+.+.+.| ++++++.||+||
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE 343 (544)
T 3o83_A 267 NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKD--QIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAE 343 (544)
T ss_dssp SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHH--HHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTT
T ss_pred CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccc--cCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeecccc
Confidence 99999999999999999999999999999887654332 346899999999999999999999998 899999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccC-CCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
++..++.... .. .....++|+|+ ++++++|+|++ .|+.|||+++|++++.||
T Consensus 344 ~~~~~~~~~~--~~--------------------~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY 401 (544)
T 3o83_A 344 GLVNYTRLDD--SD--------------------EQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGY 401 (544)
T ss_dssp SCEEECCTTS--CH--------------------HHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCC
T ss_pred ccceeecCCC--ch--------------------hhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEecCCcchhh
Confidence 8743322110 00 00123589996 89999999975 688899999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
|++++.+...|..++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++..++.+
T Consensus 402 ~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~ 481 (544)
T 3o83_A 402 YQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKS 481 (544)
T ss_dssp TTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC------------------------------------------
T ss_pred cCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceE
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
+|++++.+. ..+.+++++++++..|+.|++|+.++++ ++||+|++||++|+.|++++.+.
T Consensus 482 ~a~vv~~~~-----------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 482 CAFIVSRNP-----------------ELKAVVLRRHLMELGIAQYKLPDQIKLI-ESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEeCCC-----------------CCCHHHHHHHHHhCCCCcccCCcEEEEe-ccCCCCCCCCCcHHHHHHHHhhc
Confidence 999987653 1346778888887469999999988775 78999999999999999998754
No 14
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.2e-62 Score=497.04 Aligned_cols=344 Identities=27% Similarity=0.413 Sum_probs=287.0
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecCC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 139 (458)
..+++|+++|+|||||||.||||+++|+++..........+++.++|++++.+|++|.+|+ ..++.++..|+++++.+.
T Consensus 151 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 230 (505)
T 3nyq_A 151 GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGR 230 (505)
T ss_dssp CCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSS
T ss_pred CCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCC
Confidence 4568999999999999999999999999999988888888999999999999999999987 468899999999999999
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhc-cccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-TWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
+++..+++.+ ++++|+++++|+++..+++...... ....++++|.+++||+++++++.+.+.+.+ ++++++.||+||
T Consensus 231 ~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE 308 (505)
T 3nyq_A 231 FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTE 308 (505)
T ss_dssp CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETT
T ss_pred CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhh
Confidence 9999999999 8899999999999999987543211 111235789999999999999999999988 899999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC--------CCCccEEEEeccccch
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------SSHVGRILTRGAHVML 290 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~--------~~~~Gel~v~g~~~~~ 290 (458)
++..++...... ....++|+|+++++++++|++ .|++|||+++|++++.
T Consensus 309 ~~~~~~~~~~~~-----------------------~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~ 365 (505)
T 3nyq_A 309 TLMNTSVRADGE-----------------------PRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFT 365 (505)
T ss_dssp TEEEEECCTTSC-----------------------CCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCC
T ss_pred cccccccCCCCC-----------------------CCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhh
Confidence 986544321110 012358999999999999975 2688999999999999
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeec-cceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCc
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR-NGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 369 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 369 (458)
|||++++.+...|..++||+|||+|++++||+++++||+ ||+||++|++|+|.|||++|.+||+|.+++|++.+++.++
T Consensus 366 GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g 445 (505)
T 3nyq_A 366 EYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLG 445 (505)
T ss_dssp EETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTE
T ss_pred hhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCC
Confidence 999999999999988999999999999999999999997 5999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 370 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 370 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
+.++|++++.++. ...+.++|++++++ .|+.||+|+.++++ ++||+|++||++|++|++.
T Consensus 446 ~~l~a~vv~~~~~---------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 446 ERIVAWIVPADPA---------------APPALGTLADHVAA-RLAPHKRPRVVRYL-DAVPRNDMGKIMKRALNRD 505 (505)
T ss_dssp EEEEEEEEESSTT---------------SCCCHHHHHHHHHH-HTCGGGSCSEEEEC-SCCCC--------------
T ss_pred cEEEEEEEECCCC---------------CCCCHHHHHHHHHh-hCCCCcCccEEEEE-CCCCCCCCcCeeHHhhccC
Confidence 9999999987531 11356789999998 69999999988775 7899999999999999873
No 15
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3e-62 Score=508.23 Aligned_cols=357 Identities=20% Similarity=0.248 Sum_probs=301.7
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHH-HHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSL-AKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~ 138 (458)
...++|+++|+|||||||.||||+++|++++.+.. .....++++++|++++.+|++|++|+ ..++.+++.|+++++.+
T Consensus 252 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~ 331 (652)
T 1pg4_A 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 331 (652)
T ss_dssp CEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred ccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEEC
Confidence 34689999999999999999999999999876653 44566889999999999999999998 66889999999999987
Q ss_pred C----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC--CCceee
Q 012673 139 K----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP--KAKLIS 212 (458)
Q Consensus 139 ~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~--~~~i~~ 212 (458)
. +++..+++.|+++++|+++++|+++..|++.........++++||.+++||+++++++++++.+.++ ++++++
T Consensus 332 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~ 411 (652)
T 1pg4_A 332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD 411 (652)
T ss_dssp SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEE
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEc
Confidence 4 6899999999999999999999999999876543222234679999999999999999999999883 289999
Q ss_pred ccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEec--
Q 012673 213 AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRG-- 285 (458)
Q Consensus 213 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g-- 285 (458)
.||+||++..++...... . ....+++|+|+++++++|+|++ .|+.|||+++|
T Consensus 412 ~YG~TE~~~~~~~~~~~~-~--------------------~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~ 470 (652)
T 1pg4_A 412 TWWQTETGGFMITPLPGA-I--------------------ELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW 470 (652)
T ss_dssp EBCCGGGSSCSBCCCTTT-C--------------------CBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCC
T ss_pred cccCcccccceecCCCCC-c--------------------CccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCC
Confidence 999999986554321110 0 0122369999999999999976 46789999999
Q ss_pred cccchhhhcCcCCCCccc--CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEee
Q 012673 286 AHVMLRYWDQFLAKPSVS--TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363 (458)
Q Consensus 286 ~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 363 (458)
|+++.|||++++.+...+ ..+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|+++
T Consensus 471 p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~ 550 (652)
T 1pg4_A 471 PGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550 (652)
T ss_dssp TTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEE
T ss_pred CchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEE
Confidence 789999999987665543 247899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHH
Q 012673 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 443 (458)
Q Consensus 364 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l 443 (458)
+++..++.++|+|+++++.... ....++|++++++ .|++|++|+.++++ ++||+|++||++|+.|
T Consensus 551 ~~~~~g~~l~a~Vv~~~~~~~~-------------~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~T~sGKi~R~~L 615 (652)
T 1pg4_A 551 PHAIKGQAIYAYVTLNHGEEPS-------------PELYAEVRNWVRK-EIGPLATPDVLHWT-DSLPKTRSGKIMRRIL 615 (652)
T ss_dssp EETTTEEEEEEEEEECTTCCCC-------------HHHHHHHHHHHHH-HTCGGGCCSEEEEC-SCCCBCTTSCBCHHHH
T ss_pred EcCCCCeEEEEEEEECCCCCCC-------------HHHHHHHHHHHHH-hCCCCcCCeEEEEc-CCCCCCCCccchHHHH
Confidence 9988899999999998652100 0125789999998 69999999998775 7899999999999999
Q ss_pred HHHHHHHhhc
Q 012673 444 RREVMSHLKS 453 (458)
Q Consensus 444 ~~~~~~~~~~ 453 (458)
++.+.+.++.
T Consensus 616 ~~~~~~~~~~ 625 (652)
T 1pg4_A 616 RKIAAGDTSN 625 (652)
T ss_dssp HHHHHTC---
T ss_pred HHHHhCCCCC
Confidence 9999876543
No 16
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.4e-62 Score=497.98 Aligned_cols=356 Identities=24% Similarity=0.325 Sum_probs=304.3
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
....++|+++|+|||||||.||||+++|+++.+........+++.++|++++.+|++|.+++..++.+++.|+++++.+.
T Consensus 139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 34578999999999999999999999999999988888888999999999999999999999889999999999999886
Q ss_pred ---CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 140 ---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 140 ---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
+++..+++.|+++++|++.++|+++..++....... ..++++|.+++||+++++++.+.+.+.|+++++++.||+
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 296 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSE--SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGP 296 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCST--TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccc--hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCccc
Confidence 789999999999999999999999998876543322 245789999999999999999999999989999999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchh
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLR 291 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~g 291 (458)
||++..++.......... .....++|.|+++++++++|++ .|+.|||+++|++++.|
T Consensus 297 TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~G 358 (512)
T 3fce_A 297 TEATVAVTGIHVTEEVLD------------------QYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVG 358 (512)
T ss_dssp GGGSSCSEEEECCHHHHH------------------HCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSC
T ss_pred ChhhhheeeEEecccccc------------------ccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChh
Confidence 999876654332111000 0012258999999999999976 58899999999999999
Q ss_pred hhcCcCCCCccc---CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCC
Q 012673 292 YWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL 368 (458)
Q Consensus 292 y~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 368 (458)
||++++.+...| ++++||+|||+|++ +||+++++||+||+||++|++|+|.+||++|.+||+|.+++|++++++..
T Consensus 359 Y~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 437 (512)
T 3fce_A 359 YLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEK 437 (512)
T ss_dssp BTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTE
T ss_pred hcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCC
Confidence 999998888766 46789999999999 79999999999999999999999999999999999999999999999888
Q ss_pred cceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 369 TEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 369 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
++.++|++++.++.... .....+++++++++ .|+.|++|+.++++ ++||+|++||++|+.|++.+.
T Consensus 438 ~~~~~a~vv~~~~~~~~------------~~~~~~~l~~~l~~-~L~~~~~P~~~~~~-~~lP~t~~GKi~R~~L~~~~~ 503 (512)
T 3fce_A 438 YDYLLAVVVPGEHSFEK------------EFKLTSAIKKELNE-RLPNYMIPRKFMYQ-SSIPMTPNGKVDRKKLLSEVT 503 (512)
T ss_dssp EEEEEEEEEECSCCCSS------------HHHHHHHHHHHHHT-TSCGGGSCSEEEEC-SCCCBCTTSSBCHHHHHHHHH
T ss_pred ceEEEEEEecCCccccc------------hhhhHHHHHHHHHh-hCchhcCCeEEEEe-cccCCCCCcChHHHHHHhhhh
Confidence 99999999987652100 11234679999998 69999999998765 789999999999999999987
Q ss_pred HH
Q 012673 449 SH 450 (458)
Q Consensus 449 ~~ 450 (458)
+.
T Consensus 504 ~~ 505 (512)
T 3fce_A 504 AL 505 (512)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 17
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.4e-61 Score=500.86 Aligned_cols=352 Identities=23% Similarity=0.356 Sum_probs=311.5
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhH--HHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~--~~~~~l~~G~~~v~~~ 138 (458)
...++|+|||+|||||||.||||+++|+++.+........+++.++|++++.+|++|.+++. .++.+++.|+++++.+
T Consensus 180 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~ 259 (617)
T 3rg2_A 180 PSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA 259 (617)
T ss_dssp CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred CCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence 34679999999999999999999999999999988888899999999999999999998874 5889999999999999
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.|+++++|++.++|+++..+++..........++++|.+++||+++++++.+.+.+.+ ++++++.||+||
T Consensus 260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE 338 (617)
T 3rg2_A 260 DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAE 338 (617)
T ss_dssp SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETT
T ss_pred CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCc
Confidence 8999999999999999999999999999998766544433567899999999999999999999998 899999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccC-CCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
++..++.... ... ....++|.|+ ++.++.++|++ .|++|||+++|++++.||
T Consensus 339 ~~~~~~~~~~--~~~--------------------~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY 396 (617)
T 3rg2_A 339 GLVNYTRLDD--SAE--------------------KIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGY 396 (617)
T ss_dssp EEEEECCTTS--CHH--------------------HHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCC
T ss_pred ceeecccCCC--ccc--------------------ccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCccccchh
Confidence 8754332110 000 0112489997 78899999976 688999999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
|++++.|.+.|..++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.+
T Consensus 397 ~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~ 476 (617)
T 3rg2_A 397 YKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKS 476 (617)
T ss_dssp TTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred cCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
++++++.+. .+.++++++++++.|+.||+|+.++++ ++||+|++||++|++|++.+.....
T Consensus 477 ~a~vv~~~~------------------~~~~~l~~~l~~~~lp~~~vP~~~~~v-~~lP~t~~GKidR~~L~~~~~~~~~ 537 (617)
T 3rg2_A 477 CAYLVVKEP------------------LRAVQVRRFLREQGIAEFKLPDRVECV-DSLPLTAVGKVDKKQLRQWLASRAS 537 (617)
T ss_dssp EEEEEESSC------------------CCHHHHHHHHHTTTCCGGGSCSEEEEC-SCCCBCTTSSBCHHHHHHHHHHHHH
T ss_pred EEEEEeCCC------------------CCHHHHHHHHHhCCCccccCCcEEEEe-cccCCCCCCCCcHHHHHHHHhcccc
Confidence 999998764 456789999987569999999998875 7899999999999999999887665
Q ss_pred cC
Q 012673 453 SL 454 (458)
Q Consensus 453 ~~ 454 (458)
.-
T Consensus 538 ~~ 539 (617)
T 3rg2_A 538 AG 539 (617)
T ss_dssp HS
T ss_pred cc
Confidence 43
No 18
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.1e-61 Score=496.56 Aligned_cols=399 Identities=22% Similarity=0.265 Sum_probs=315.6
Q ss_pred cccccccchhhhhhccccCCCcceEEeeCCCCc-chhhhhhhhhhcccccCcccccCCCCCCCCCceEEEEeccCCCCCc
Q 012673 2 LVTDESSDSWYLELQHTAIPSLRWHVSLGSSSS-DFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSP 80 (458)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~P 80 (458)
+|+++.+.+.+..+ ..++|.++.++.+++... ......+++. ... .. .......++|+++|+|||||||.|
T Consensus 150 vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~-~~~~~~~~~d~a~i~~TSGTTG~P 221 (570)
T 3c5e_A 150 IVAGDEVIQEVDTV-ASECPSLRIKLLVSEKSCDGWLNFKKLLN-----EAS-TT-HHCVETGSQEASAIYFTSGTSGLP 221 (570)
T ss_dssp EEEETTTHHHHHHH-GGGCTTCCEEEEESSSCCTTSEEHHHHHH-----HSC-SC-CCCCCCBTTSEEEEEECCCSSSSC
T ss_pred EEechHHHHHHHHH-hhcCCceeEEEEecccCccccccHHHHhh-----ccc-cc-ccccCCCCCCcEEEEECCCCCCCC
Confidence 45555555554444 345677777776654221 1111111111 110 11 111235689999999999999999
Q ss_pred cceecccHHHHH-HHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEecC--CCChHHHHHHHHHhcceE
Q 012673 81 KGVVISHSALIV-QSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIP--KFESKSALEAVEQHCVTS 156 (458)
Q Consensus 81 K~v~~sh~~~~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~ 156 (458)
|||+++|+.+.. ..... ..++++++|++++.+|++|.+++. .++.++..|+++++.+ .+++..+++.|+++++|+
T Consensus 222 KgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~ 300 (570)
T 3c5e_A 222 KMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 300 (570)
T ss_dssp CEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCE
T ss_pred CEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeE
Confidence 999999994332 33333 667889999999999999999985 6788999999999886 689999999999999999
Q ss_pred EeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccceeeeeecCCCCCCC
Q 012673 157 LITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 236 (458)
Q Consensus 157 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~ 236 (458)
++++|+++..|++.. .....++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..++.... ..
T Consensus 301 ~~~~P~~~~~l~~~~---~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~---~~--- 370 (570)
T 3c5e_A 301 MMGAPIVYRMLLQQD---LSSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSKT---MK--- 370 (570)
T ss_dssp EEECHHHHHHHHTSC---TTTCCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTT---SC---
T ss_pred EeccHHHHHHHHhcc---ccccccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCcc---cc---
Confidence 999999999998651 1112357899999999999999999999988 8999999999999854432210 00
Q ss_pred CCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEe-----ccccchhhhcCcCCCCcccCCC
Q 012673 237 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTR-----GAHVMLRYWDQFLAKPSVSTGE 306 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~-----g~~~~~gy~~~~~~~~~~~~~~ 306 (458)
...+++|+|+++++++|+|++ .|+.|||+++ |++++.|||++++.+...+. +
T Consensus 371 -----------------~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~ 432 (570)
T 3c5e_A 371 -----------------IKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-G 432 (570)
T ss_dssp -----------------CCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-T
T ss_pred -----------------cCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc-C
Confidence 012369999999999999976 5789999999 99999999999988887774 7
Q ss_pred ceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEecccccccc
Q 012673 307 VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSE 386 (458)
Q Consensus 307 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~ 386 (458)
+||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++|+|++.++....
T Consensus 433 ~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~- 511 (570)
T 3c5e_A 433 DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSH- 511 (570)
T ss_dssp TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTS-
T ss_pred CccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCc-
Confidence 8999999999999999999999999999999999999999999999999999999999998899999999987652100
Q ss_pred ccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHH
Q 012673 387 SNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
......++|++++++ .|+.|++|+.++++ ++||+|++||++|+.|++.+...
T Consensus 512 ----------~~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 512 ----------DPEQLTKELQQHVKS-VTAPYKYPRKIEFV-LNLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp ----------CHHHHHHHHHHHHHH-HSCGGGSCSEEEEE-SCCCBCTTCCBCHHHHHHHHTC-
T ss_pred ----------chHHHHHHHHHHHHh-hCccccCCcEEEEe-ccCCCCCCcCCcHHHHHHHHHhh
Confidence 011236789999988 79999999998775 78999999999999999987543
No 19
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1e-62 Score=498.76 Aligned_cols=343 Identities=26% Similarity=0.445 Sum_probs=207.6
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
....++|+++|+|||||||.||||+++|+++..........+++.++|++++.+|++|.+++...+.++..|++.++...
T Consensus 155 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~ 234 (509)
T 3ivr_A 155 PEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAK 234 (509)
T ss_dssp CCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecc
Confidence 45678999999999999999999999999999888888889999999999999999999999887777777777777778
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccC
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 219 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 219 (458)
+++..+++.|+++++|+++++|+++..|++.... ..++++|.++.+|++ ++.+.+.+.++++++++.||+||+
T Consensus 235 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~ 307 (509)
T 3ivr_A 235 FDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAP----AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSET 307 (509)
T ss_dssp CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCG----GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGG
T ss_pred cCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccc----cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcccc
Confidence 9999999999999999999999999999876521 234689999999987 888899999989999999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhhhc
Q 012673 220 SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYWD 294 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy~~ 294 (458)
+.+++....... ..++|+|+++++++++|++ .|+.|||+++|++++.|||+
T Consensus 308 ~~~~~~~~~~~~------------------------~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~ 363 (509)
T 3ivr_A 308 SGLSTFAPYRDR------------------------PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWN 363 (509)
T ss_dssp TEEEEEEEGGGS------------------------TTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETT
T ss_pred ccccccCccccC------------------------CCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccC
Confidence 876665433211 0138999999999999976 57889999999999999999
Q ss_pred CcCCCCcccCCCceEecCceEEEeCCCcEEEEeec--cceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 295 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR--NGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
+++.+...|. ++||+|||+|++++||+++++||+ +|+||++|++|+|.+||++|.+||+|.+++|++++++.+++.+
T Consensus 364 ~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~ 442 (509)
T 3ivr_A 364 NAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAI 442 (509)
T ss_dssp CHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC---------------------------------------------
T ss_pred CHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEE
Confidence 9998888775 899999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHhh
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 452 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~ 452 (458)
++++++.++. ..+.++|++++++ .|+.|++|+.++++ ++||+|++||++|++||+++.+.-+
T Consensus 443 ~a~v~~~~~~----------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKidr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 443 KAVCVCKPGE----------------SIAADALAEFVAS-LIARYKKPKHVVFV-EALPKDAKGAIDRAAVKTAHGQEGH 504 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCC----------------CCCHHHHHHHHHh-hCcccCCCcEEEEe-cCCCCCCCCCccHHHHHHHHhhccc
Confidence 9999987652 2456789999998 69999999988775 7899999999999999999887543
No 20
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.2e-61 Score=503.87 Aligned_cols=363 Identities=20% Similarity=0.286 Sum_probs=297.0
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHH-HHHHhhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSL-AKIAIVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~ 138 (458)
..+++|+++|+|||||||.||||+++|+++..+.. .....+++.++|++++.+|++|+.+. ..++.+++.|+++++.+
T Consensus 258 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~ 337 (663)
T 1ry2_A 258 PVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFE 337 (663)
T ss_dssp CEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEEC
T ss_pred ccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEEC
Confidence 35689999999999999999999999999876553 44556889999999999999999998 66789999999999986
Q ss_pred C----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCC--CCceee
Q 012673 139 K----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP--KAKLIS 212 (458)
Q Consensus 139 ~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~--~~~i~~ 212 (458)
. +++..+++.|+++++|+++++|+++..|.+..........+++||.+++||+++++++++++.+.++ ++++++
T Consensus 338 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~ 417 (663)
T 1ry2_A 338 GTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVD 417 (663)
T ss_dssp SCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEE
T ss_pred CCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEE
Confidence 4 6899999999999999999999999998765432112234679999999999999999999999883 289999
Q ss_pred ccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecC-C-----C-CCccEEEEec
Q 012673 213 AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-G-----S-SHVGRILTRG 285 (458)
Q Consensus 213 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~-----~-~~~Gel~v~g 285 (458)
.||+||++..++........ ....+++|.|+++++++|+|+ + . |+.|||+++|
T Consensus 418 ~YG~TE~~~~~~~~~~~~~~--------------------~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g 477 (663)
T 1ry2_A 418 TYWQTESGSHLVTPLAGGVT--------------------PMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKA 477 (663)
T ss_dssp CBCCTTTCSCSEECCTTTCC--------------------CCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESS
T ss_pred eECCccccCeeeccCCCCCc--------------------ccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEec
Confidence 99999998655432210000 012236999999999999997 3 2 7889999999
Q ss_pred --cccchhhhcCcCCCCcccC--CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEE
Q 012673 286 --AHVMLRYWDQFLAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361 (458)
Q Consensus 286 --~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 361 (458)
|+++.|||++++.+...+. .+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|+
T Consensus 478 ~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vv 557 (663)
T 1ry2_A 478 AWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVV 557 (663)
T ss_dssp CCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEE
T ss_pred CCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEE
Confidence 5899999999877655543 378999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHH
Q 012673 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD 441 (458)
Q Consensus 362 ~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~ 441 (458)
+++++..++.++|+|+++++..+... ...+.....++|++++++ .|++|++|+.++++ ++||+|++||++|+
T Consensus 558 g~~~~~~g~~~~a~Vv~~~~~~~~~~------~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~T~sGKi~R~ 629 (663)
T 1ry2_A 558 GFNDDLTGQAVAAFVVLKNKSSWSTA------TDDELQDIKKHLVFTVRK-DIGPFAAPKLIILV-DDLPKTRSGKIMRR 629 (663)
T ss_dssp CCCCCTTSCCCEEEEEEC------------------CCSHHHHHHHHHHH-HTCTTTSCSEEEEC-SCCCBCTTSCBCHH
T ss_pred EEecCCCCeEEEEEEEEcCCCccccc------cchhHHHHHHHHHHHHHH-hCCCCcCCeEEEEc-CCCCCCCccCchHH
Confidence 99998889999999999875320000 000000125789999998 69999999998875 78999999999999
Q ss_pred HHHHHHHHHh
Q 012673 442 EVRREVMSHL 451 (458)
Q Consensus 442 ~l~~~~~~~~ 451 (458)
.|++.+.+.+
T Consensus 630 ~L~~~~~~~~ 639 (663)
T 1ry2_A 630 ILRKILAGES 639 (663)
T ss_dssp HHHHSCC---
T ss_pred HHHHHHcCCC
Confidence 9999887654
No 21
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.9e-61 Score=489.57 Aligned_cols=361 Identities=23% Similarity=0.296 Sum_probs=293.6
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHh--hcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEec
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI--VGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFI 137 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~ 137 (458)
....++|+++|+|||||||.||||+++|+++.+........ +++..++++++..|++|..++..++.++..|+++++.
T Consensus 140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~ 219 (521)
T 3l8c_A 140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFAL 219 (521)
T ss_dssp SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 34578999999999999999999999999998777666554 6778899999999999999988888999999999998
Q ss_pred CC---CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecc
Q 012673 138 PK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAY 214 (458)
Q Consensus 138 ~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 214 (458)
+. .++..+++.|+++++|++.++|+++..+........ ...+++|.+++||+++++++.+.+.+.|+++++++.|
T Consensus 220 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~Y 297 (521)
T 3l8c_A 220 PKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQ--AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAY 297 (521)
T ss_dssp CGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCST--TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccc--ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCc
Confidence 76 388999999999999999999999988876533222 2357899999999999999999999999899999999
Q ss_pred ccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccc
Q 012673 215 GMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVM 289 (458)
Q Consensus 215 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~ 289 (458)
|+||++..++.......... .....++|+|+++++++|+|++ .|+.|||+++|++++
T Consensus 298 G~TE~~~~~~~~~~~~~~~~------------------~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~ 359 (521)
T 3l8c_A 298 GPTEATVALSAIEITREMVD------------------NYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVS 359 (521)
T ss_dssp CCGGGSSCSEEEEECHHHHH------------------HCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSC
T ss_pred CccHHhhhhceeeccccccc------------------CCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccC
Confidence 99999876655432211000 0012369999999999999976 578899999999999
Q ss_pred hhhhcCcCCCCccc---CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCC
Q 012673 290 LRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 366 (458)
Q Consensus 290 ~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 366 (458)
.|||++++.+.+.| ++++||+|||+|++++||+++++||+||+||++|++|+|.+||++|.+||+|.+++|++.+++
T Consensus 360 ~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 439 (521)
T 3l8c_A 360 KGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNK 439 (521)
T ss_dssp SCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSS
T ss_pred hhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecC
Confidence 99999999888766 578899999999999999999999999999999999999999999999999999999998765
Q ss_pred C-CcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 367 R-LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 367 ~-~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
. .++.++|+++++++.....+ ......++|+++|++ .|+.|++|+.++++ ++||+|++||++|+.|++
T Consensus 440 ~~~~~~~~a~vv~~~~~~~~~~---------~~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~~GKidr~~L~~ 508 (521)
T 3l8c_A 440 EHKVQNLLAYIVVKDGVKERFD---------RELELTKAIKASVKD-HMMSYMMPSKFLYR-DSLPLTPNGKIDIKTLIN 508 (521)
T ss_dssp SCC---CEEEEEECTTSGGGCS---------SHHHHHHHHHHHSGG-GSCGGGSCSEEEEC-SSCCBCTTSSBCHHHHHH
T ss_pred CCCceEEEEEEEecCccccccc---------cchhhHHHHHHHHHh-hCccccCCeEEEEe-cccCCCCCcCccHHHHhh
Confidence 4 46889999999876321100 011236789999998 69999999998775 789999999999999999
Q ss_pred HHHHHh
Q 012673 446 EVMSHL 451 (458)
Q Consensus 446 ~~~~~~ 451 (458)
.+.++-
T Consensus 509 ~~~~~~ 514 (521)
T 3l8c_A 509 EVNNRE 514 (521)
T ss_dssp HTC---
T ss_pred hhhcCC
Confidence 987653
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.2e-61 Score=493.70 Aligned_cols=336 Identities=24% Similarity=0.317 Sum_probs=288.8
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
...++|+++|+|||||||.||||+++|+++.+........+++.++|++++.+|++|.+++..++.+++.|+++++.+.
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 257 (563)
T 1amu_A 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD 257 (563)
T ss_dssp CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHH
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChH
Confidence 3467899999999999999999999999998888777788899999999999999999998888899999999999876
Q ss_pred --CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 140 --FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 140 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
+++..+++.|+++++|++.++|+++..+... ..+++|.+++||+++++++.+.+.+. +++++.||+|
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~T 326 (563)
T 1amu_A 258 TINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPT 326 (563)
T ss_dssp HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCG
T ss_pred hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcC
Confidence 6899999999999999999999988776432 24689999999999999999998873 6899999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++..++......... ....++|+|+++++++|+|++ .|+.|||+++|++++.||
T Consensus 327 E~~~~~~~~~~~~~~~--------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY 386 (563)
T 1amu_A 327 ETTICATTWVATKETI--------------------GHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGY 386 (563)
T ss_dssp GGSSCSEEEECCSSCC--------------------CSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEE
T ss_pred HHhHhheeeecccccC--------------------CCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhh
Confidence 9987655433211100 012358999999999999975 578999999999999999
Q ss_pred hcCcCCCCcccC------CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCC
Q 012673 293 WDQFLAKPSVST------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 366 (458)
Q Consensus 293 ~~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 366 (458)
|++++.|.+.|. +++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+++
T Consensus 387 ~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~ 466 (563)
T 1amu_A 387 WKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDH 466 (563)
T ss_dssp TTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECT
T ss_pred CCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecC
Confidence 999988776653 45799999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 367 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 367 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
..++.++|++++... .+.++|++++++ .|+.||+|+.++++ ++||+|++||++|+.|++.
T Consensus 467 ~~~~~~~a~vv~~~~------------------~~~~~l~~~l~~-~L~~y~~P~~i~~v-~~lP~t~~GKi~r~~L~~~ 526 (563)
T 1amu_A 467 QEQPYLCAYFVSEKH------------------IPLEQLRQFSSE-ELPTYMIPSYFIQL-DKMPLTSNGKIDRKQLPEP 526 (563)
T ss_dssp TSCEEEEEEEEESSC------------------CCHHHHHHHHHH-HSCGGGSCSEEEEC-SSCCBCTTSSBCGGGSCCC
T ss_pred CCCeEEEEEEEeCCC------------------CCHHHHHHHHHh-hCchhhCCcEEEEe-cccCCCCCcChhHHhcCCc
Confidence 889999999987643 356789999998 69999999998775 7899999999999999864
Q ss_pred H
Q 012673 447 V 447 (458)
Q Consensus 447 ~ 447 (458)
.
T Consensus 527 ~ 527 (563)
T 1amu_A 527 D 527 (563)
T ss_dssp C
T ss_pred c
Confidence 3
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.8e-62 Score=501.76 Aligned_cols=345 Identities=26% Similarity=0.328 Sum_probs=207.3
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC-
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP- 138 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~- 138 (458)
....++|+++|+|||||||.||||+++|+++.+.... ...+++.++|++++++|++|..+...++.+++.|+++++.+
T Consensus 209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 3457899999999999999999999999998755433 34567889999999999999877778889999999999987
Q ss_pred -CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 139 -KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 139 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.+++..+++.|+++++|++.++|+++..|++.... .++++|.+++||+++++++.+.+.+.++++++++.||+|
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~T 362 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-----AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPA 362 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCG
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechh
Confidence 47899999999999999999999999999875321 247899999999999999999999999899999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++++.+.......... ....++|+|+++++++|+|++ .|++|||+|+|++++.||
T Consensus 363 E~~~~~~~~~~~~~~~~-------------------~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY 423 (570)
T 4gr5_A 363 ESMGFTTHHAVVAGDLS-------------------GTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGY 423 (570)
T ss_dssp GGCSCSEEEECCGGGTT-------------------SSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEE
T ss_pred hheeeeeeeeecccccC-------------------CCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhc
Confidence 99876654432211100 012258999999999999976 678899999999999999
Q ss_pred hcCcCCCCcccC--------CCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeec
Q 012673 293 WDQFLAKPSVST--------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 364 (458)
Q Consensus 293 ~~~~~~~~~~~~--------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 364 (458)
|++++.+.+.|. +++||+|||+|++++||+++++||+||+||++|+||+|.|||++|.+||+|.+++|++.+
T Consensus 424 ~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~ 503 (570)
T 4gr5_A 424 VSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQD 503 (570)
T ss_dssp TTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------
T ss_pred CCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEee
Confidence 999988877663 348999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHH
Q 012673 365 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 444 (458)
Q Consensus 365 ~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~ 444 (458)
++.+++.++|++++.++. ...+.++|+++|++ .|+.|++|+.++++ ++||+|++||++|++|+
T Consensus 504 ~~~~~~~~~a~vv~~~~~---------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~ 566 (570)
T 4gr5_A 504 SRLGDKQLVAYVVAERAD---------------APPDAAELRRHVAE-ALPAYMVPVECVPV-DELPRTPNGKLDRRALT 566 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEEEecCCC---------------CCcCHHHHHHHHHh-hCccccCCcEEEEc-ccCCCCCCcCcchHhhh
Confidence 888889999999876531 12456789999998 69999999988775 78999999999999998
Q ss_pred HH
Q 012673 445 RE 446 (458)
Q Consensus 445 ~~ 446 (458)
+.
T Consensus 567 ~~ 568 (570)
T 4gr5_A 567 GS 568 (570)
T ss_dssp --
T ss_pred cc
Confidence 75
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.6e-61 Score=525.33 Aligned_cols=360 Identities=30% Similarity=0.435 Sum_probs=219.0
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHH----hhcCCCCceEEeccchhhHhhh-HHHHHHHhcCceE
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA----IVGYGEDDVYLHTAPLCHIGGL-SSAMAMLMVGACH 134 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~ 134 (458)
....++|+++|+|||||||.||||+++|+++......... .+++.++|++++.+|++|.+++ ..++.++..|+++
T Consensus 220 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~ 299 (979)
T 3tsy_A 220 VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAI 299 (979)
T ss_dssp SCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEE
T ss_pred CCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEE
Confidence 3467899999999999999999999999999877665543 3467889999999999999998 4567889999999
Q ss_pred EecCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecc
Q 012673 135 VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAY 214 (458)
Q Consensus 135 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 214 (458)
++.+++++..+++.|+++++|++.++|+++..|++....... .++++|.+++||+++++++.+.+.+.||++++++.|
T Consensus 300 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~Y 377 (979)
T 3tsy_A 300 LIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKY--DLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGY 377 (979)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTS--CCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECE
T ss_pred EEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCC--CccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeee
Confidence 999999999999999999999999999999999877544332 457899999999999999999999999999999999
Q ss_pred ccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEecccc
Q 012673 215 GMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHV 288 (458)
Q Consensus 215 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~ 288 (458)
|+||++.+++.+........ ....+++|+|+++++++|+|++ .|+.|||+|+|+++
T Consensus 378 G~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v 439 (979)
T 3tsy_A 378 GMTEAGPVLAMSLGFAKEPF------------------PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQI 439 (979)
T ss_dssp ECGGGCSEEEECGGGSSSCC------------------CCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTS
T ss_pred chhhhhHHHHhCCCCCCCcc------------------ccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCc
Confidence 99999876554322111100 0122368999999999999954 57889999999999
Q ss_pred chhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCC
Q 012673 289 MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL 368 (458)
Q Consensus 289 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 368 (458)
+.|||++++.+.+.++.++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++..
T Consensus 440 ~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~ 519 (979)
T 3tsy_A 440 MKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAA 519 (979)
T ss_dssp CSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------------------------------
T ss_pred cccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCC
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHH
Q 012673 369 TEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 448 (458)
Q Consensus 369 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~ 448 (458)
++.+++++++.++. ..+.+++++++++ .|+.|++|+.++++ ++||+|++||++|+.|++.+.
T Consensus 520 g~~~~a~vv~~~~~----------------~~~~~~l~~~l~~-~l~~~~~p~~i~~v-~~lP~t~~GKi~r~~L~~~~~ 581 (979)
T 3tsy_A 520 GEVPVAFVVKSKDS----------------ELSEDDVKQFVSK-QVVFYKRINKVFFT-ESIPKAPSGKILRKDLRAKLA 581 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEECCCC----------------CCCHHHHHHHHHH-hcccccCCeEEEEe-CCcCcCCCCCeeHHHHHHHHH
Confidence 99999999987652 2456789999998 69999999987765 789999999999999999999
Q ss_pred HHhhcCCCC
Q 012673 449 SHLKSLPSN 457 (458)
Q Consensus 449 ~~~~~~~~~ 457 (458)
+.+++-|.+
T Consensus 582 ~~~~~~~~~ 590 (979)
T 3tsy_A 582 NGLGSGMAS 590 (979)
T ss_dssp -------CC
T ss_pred hhcCCcccc
Confidence 988877764
No 25
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.2e-60 Score=492.36 Aligned_cols=341 Identities=21% Similarity=0.337 Sum_probs=283.2
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC--
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP-- 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~-- 138 (458)
...++|+|||+|||||||.||||+++|+++.+.... ...+++.++|++++.+|++|..++..++.++..|+++++.+
T Consensus 160 ~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 160 CFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLG 238 (620)
T ss_dssp CCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSS
T ss_pred CCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccc
Confidence 356899999999999999999999999999765544 45678899999999999999999989999999999999864
Q ss_pred CCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccccc
Q 012673 139 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTE 218 (458)
Q Consensus 139 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 218 (458)
.+++..+++.|+++++|+++++|+++..|++... ..++++|.+++||+++++++.+.+.+.+++++++|.||+||
T Consensus 239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 313 (620)
T 4dg8_A 239 PLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-----DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTE 313 (620)
T ss_dssp SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-----hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhh
Confidence 5899999999999999999999999999876421 13478999999999999999999988888999999999999
Q ss_pred CccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccchhh
Q 012673 219 TSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~gy 292 (458)
++..++.......... ....++|+|+++++++|+|++ .|++|||+++|++++.||
T Consensus 314 ~~~~~~~~~~~~~~~~-------------------~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY 374 (620)
T 4dg8_A 314 NTTFTCCHVVTDDDLE-------------------EDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGY 374 (620)
T ss_dssp GCSCSEEEECCTGGGG-------------------SSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEE
T ss_pred hhhheEEEeccccccC-------------------CCCCCceecccCcEEEEECccCCCCCCCCCceEEEEecccccccc
Confidence 9876654332211100 022359999999999999975 467899999999999999
Q ss_pred hcCcCCCCcccCCC-------ceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecC
Q 012673 293 WDQFLAKPSVSTGE-------VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 365 (458)
Q Consensus 293 ~~~~~~~~~~~~~~-------~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 365 (458)
|++++.|.+.|..+ +||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.++
T Consensus 375 ~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~ 454 (620)
T 4dg8_A 375 RNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRER 454 (620)
T ss_dssp TTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred CCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeC
Confidence 99999888777442 79999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHH
Q 012673 366 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 445 (458)
Q Consensus 366 ~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 445 (458)
+..++.+++++. ... ++++++++ .|+.||+|+.++++ ++||+|++||++|++|++
T Consensus 455 ~~~~~lv~~~~~-~~~----------------------~~~~~l~~-~Lp~y~~P~~~~~v-~~lP~t~~GKidR~~L~~ 509 (620)
T 4dg8_A 455 NGVKQLLCAWTG-KAD----------------------ASPQALLR-QLPTWQRPHACVRV-EALPLTAHGKLDRAALLR 509 (620)
T ss_dssp TTEEEEEEEEEE-CTT----------------------CCCHHHHH-HSCGGGSCSEEEEC-SSCCCC----CCHHHHHH
T ss_pred CCceEEEEEEec-ChH----------------------HHHHHHHH-hChhhcCCcEEEEE-CcCCCCcccCHhHHHHhh
Confidence 755555554442 211 12244555 59999999998875 789999999999999998
Q ss_pred HHHHHh
Q 012673 446 EVMSHL 451 (458)
Q Consensus 446 ~~~~~~ 451 (458)
.+.+.+
T Consensus 510 ~~~~~~ 515 (620)
T 4dg8_A 510 RLEEPL 515 (620)
T ss_dssp HTCSCC
T ss_pred cccccc
Confidence 775443
No 26
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=8e-60 Score=479.79 Aligned_cols=343 Identities=25% Similarity=0.371 Sum_probs=282.2
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHH-HHHHHHHHHhhcCCCCceEEeccchhhHhhhH-HHHHHHhcCceEEec-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSAL-IVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFI- 137 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~- 137 (458)
...++|+++++|||||||.||||+++|+++ ..........+++.++|++++.+|++|.+++. .++.++..|+++++.
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 258 (529)
T 2v7b_A 179 ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMA 258 (529)
T ss_dssp CCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCC
T ss_pred CCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEec
Confidence 456899999999999999999999999998 55544444556788999999999999999985 467889999999987
Q ss_pred CCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 138 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 138 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
+.+++..+++.|+++++|+++++|+++..+++....... ...++|.+++||+++++++.+.+.+.| ++++++.||+|
T Consensus 259 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~T 335 (529)
T 2v7b_A 259 ERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPAR--ADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGST 335 (529)
T ss_dssp SCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCG--GGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECT
T ss_pred CCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccc--cCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchh
Confidence 568999999999999999999999999988765322221 124799999999999999999999988 89999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++.+++...... . ...++|+|+++++++++|++ .|+.|||+++|++++.||
T Consensus 336 E~~~~~~~~~~~~---~--------------------~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY 392 (529)
T 2v7b_A 336 EMLHIFLSNRAGA---V--------------------EYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMY 392 (529)
T ss_dssp TTSSEEEECCTTC---C--------------------CTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCB
T ss_pred hcCceeeccccCC---C--------------------ccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCccccc
Confidence 9976544321110 0 12258999999999999975 578899999999999999
Q ss_pred hcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceE
Q 012673 293 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 372 (458)
|++++.+...+. ++||+|||++++++||+++++||+||+||++|++|+|.+||++|.+||+|.+++|+++ ++..++.+
T Consensus 393 ~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~ 470 (529)
T 2v7b_A 393 WNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKT 470 (529)
T ss_dssp TTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEE
T ss_pred CCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEE
Confidence 999988877774 7899999999999999999999999999999999999999999999999999999999 66678889
Q ss_pred EEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 373 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 373 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
++++++.++... .....++|++++++ .|+.|++|+.++++ ++||+|++||++|++|+++
T Consensus 471 ~a~vv~~~~~~~-------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 471 RAFVVLKREFAP-------------SEILAEELKAFVKD-RLAPHKYPRDIVFV-DDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp EEEEEECTTCCC-------------CHHHHHHHHHHHHT-TSCTTTSCSEEEEE-SCCCBCTTSCBCHHHHHC-
T ss_pred EEEEEecCCCCc-------------chhHHHHHHHHHHh-hcchhhCCeEEEEe-ccCCCCCccchhHHhHhhC
Confidence 999998764210 00124689999998 79999999998875 7899999999999999863
No 27
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=7e-59 Score=448.08 Aligned_cols=317 Identities=19% Similarity=0.245 Sum_probs=268.5
Q ss_pred CCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCCCChH
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESK 143 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~ 143 (458)
.+|+|||+|||||||.||||++||+++.++.......++++++|++++++|++|++|+..++.++..|+++++.++. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 47899999999999999999999999999988888999999999999999999999998889999999999887642 1
Q ss_pred HHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccccCccce
Q 012673 144 SALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSL 223 (458)
Q Consensus 144 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 223 (458)
..++.|+++++|++.++|+++..|++...... .++++|.+++||+++++++.+++++. ++++++.||+||++..+
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~---~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~ 188 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSATSG---QVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHV 188 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTTGG---GGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhccccccc---cCCcceEEEEcccCCCchheeccccc--CceEEecccccccccee
Confidence 23667899999999999999999987643322 35789999999999999999999874 79999999999998766
Q ss_pred eeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCCCCCccEEEEeccccchhhhcCcCCCCccc
Q 012673 224 TFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVS 303 (458)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~ 303 (458)
+....... ..+++|.+.|++++.+.+. ||++++|+..
T Consensus 189 ~~~~~~~~-----------------------~~g~~~~~~pgv~~~~~~~-----Gel~~~g~~~--------------- 225 (358)
T 4gs5_A 189 ALKALNGP-----------------------EASELYVFLPGIQYGVDER-----GCLHISGAVT--------------- 225 (358)
T ss_dssp EEEECSST-----------------------TCCSCEEECTTCEEEECTT-----SEEEEESGGG---------------
T ss_pred eccccccc-----------------------ccceeeccCCCeEEEecCc-----CceEEecccc---------------
Confidence 55433221 1224889999999888554 9999998642
Q ss_pred CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHH---hcCcCcceEEEE-eecCCCCcceEEEEEEec
Q 012673 304 TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL---LQHPGIIGIVVV-GIANARLTEMVVACVRLR 379 (458)
Q Consensus 304 ~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l---~~~~~v~~~~v~-~~~~~~~~~~~~a~v~~~ 379 (458)
.++||+|||+|++++|| ++++||+||+||++|+||+|.|||++| .+||+|.+++|+ +.+++.+|+.++|+++..
T Consensus 226 -~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~ 303 (358)
T 4gs5_A 226 -NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENA 303 (358)
T ss_dssp -TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESC
T ss_pred -cCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECC
Confidence 46899999999999988 667799999999999999999999877 468999998876 678888899999998865
Q ss_pred cccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHHHHHHh
Q 012673 380 ESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 451 (458)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 451 (458)
.+ ....++|+++|++ .|+.|++|+.++++ ++||+|++||++|++|++++++..
T Consensus 304 ~~-----------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 304 MP-----------------EALTERLTAEIRS-RVSTYENPKHIYFA-KAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp CC-----------------HHHHHHHHHHHHH-HSCGGGSCSCEEEE-SSCCBCTTSCBCHHHHHHHTC---
T ss_pred CC-----------------CcCHHHHHHHHHh-hCCCCCCceEEEEE-CCcCCCCCCChhHHHHHHHhhhhc
Confidence 53 1346789999998 69999999998775 789999999999999999887653
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=8.3e-58 Score=508.11 Aligned_cols=344 Identities=22% Similarity=0.313 Sum_probs=297.7
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
...++|+|||+|||||||+||||+++|+++.+. ......+++.++|++++..|++|..+...++.++..|+++++.+.
T Consensus 603 ~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~ 681 (1304)
T 2vsq_A 603 AIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEH 681 (1304)
T ss_dssp CCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGG
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChh
Confidence 457899999999999999999999999999754 444456678899999999999999998899999999999999874
Q ss_pred --CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeeccccc
Q 012673 140 --FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 217 (458)
Q Consensus 140 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 217 (458)
.++..+++.|+++++|+++++|+++..+.+.... ..+++|.+++|||++++++.+.+.+.+++++++|.||+|
T Consensus 682 ~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~-----~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 756 (1304)
T 2vsq_A 682 TLLDTERLTDLILQENVNVMFATTALFNLLTDAGED-----WMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPT 756 (1304)
T ss_dssp GTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH-----HHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCG
T ss_pred hcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh-----cCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChh
Confidence 7899999999999999999999999998764211 135799999999999999999999988778999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCccEEEEeccccchhh
Q 012673 218 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 292 (458)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~Gel~v~g~~~~~gy 292 (458)
|++..++.......... ....++|+|++++++.|+|++ .|++|||+|+|+++++||
T Consensus 757 E~~~~~~~~~~~~~~~~-------------------~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY 817 (1304)
T 2vsq_A 757 EGTVFATAHVVHDLPDS-------------------ISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGY 817 (1304)
T ss_dssp GGSSCSEEEECCCCCSS-------------------CSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCB
T ss_pred HHhHHheeeeccCcccc-------------------CCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccc
Confidence 99876655432211000 012259999999999999976 588999999999999999
Q ss_pred hcCcCCCCccc------CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCC
Q 012673 293 WDQFLAKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 366 (458)
Q Consensus 293 ~~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 366 (458)
+++++.|.+.| .+++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.++.
T Consensus 818 ~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~ 897 (1304)
T 2vsq_A 818 VNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHE 897 (1304)
T ss_dssp TTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred cCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecC
Confidence 99998887766 346799999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCCCcccchHHHHHHH
Q 012673 367 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 446 (458)
Q Consensus 367 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~ 446 (458)
..++.++|+++.... .+.+++++++++ .||.||+|..++++ ++||+|++||++|++|++.
T Consensus 898 ~~~~~l~a~vv~~~~------------------~~~~~l~~~l~~-~Lp~ymvP~~~~~l-~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 898 SGDASINAYLVNRTQ------------------LSAEDVKAHLKK-QLPAYMVPQTFTFL-DELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp SSCCEEEEEEECSSS------------------SCHHHHHHHHHH-HSCGGGSCSEEEEE-SCCCCCSSCSSCCSCCCCC
T ss_pred CCCEEEEEEEeCCCC------------------CCHHHHHHHHHH-hChHhhhccEEEEe-cccCCCCCcccCHhhcCCc
Confidence 888999999987643 456889999998 69999999998876 7899999999999998765
Q ss_pred HHH
Q 012673 447 VMS 449 (458)
Q Consensus 447 ~~~ 449 (458)
...
T Consensus 958 ~~~ 960 (1304)
T 2vsq_A 958 DQD 960 (1304)
T ss_dssp CGG
T ss_pred chh
Confidence 443
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.3e-57 Score=468.03 Aligned_cols=372 Identities=21% Similarity=0.250 Sum_probs=296.7
Q ss_pred CCCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHH-HHHHHhcCceEEecC
Q 012673 60 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS-AMAMLMVGACHVFIP 138 (458)
Q Consensus 60 ~~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~ 138 (458)
....++|+++|+|||||||.||||+++|+++..+.......+++.++|++++++|++|.+|+.. ++.+++.|+++++.+
T Consensus 162 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 162 TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 3457899999999999999999999999999999988888999999999999999999999865 788999999999988
Q ss_pred CC----ChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhc-cccCCCCceEEEeCCCCCCHHHHHHHHhhCC-----CC
Q 012673 139 KF----ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-TWKGRDSVKKILNGGGGLPSELMKEATNSFP-----KA 208 (458)
Q Consensus 139 ~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-----~~ 208 (458)
.+ ++..+++.|+++++|++.++|.++..+++.+.... ....++++|.+++||+++++++.+.+.+.|+ ++
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~ 321 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKE 321 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGG
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 65 89999999999999999999999999887643322 2234579999999999999999999998873 45
Q ss_pred ceeeccccccCccceeeeeecCCCCC----CCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCc
Q 012673 209 KLISAYGMTETSSSLTFMTLYDPTLE----TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHV 278 (458)
Q Consensus 209 ~i~~~YG~tE~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~ 278 (458)
++++.||+||++..++.......... ..............+........++|+|+++ ++|+|++ .|++
T Consensus 322 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~ 399 (590)
T 3kxw_A 322 AFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQV 399 (590)
T ss_dssp GEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBC
T ss_pred ccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCE
Confidence 79999999999986654332111000 0000000000000011112234578999998 7778765 5778
Q ss_pred cEEEEeccccchhhhcCcCCCCcccCC--------CceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHH-
Q 012673 279 GRILTRGAHVMLRYWDQFLAKPSVSTG--------EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL- 349 (458)
Q Consensus 279 Gel~v~g~~~~~gy~~~~~~~~~~~~~--------~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l- 349 (458)
|||+|+|++++.|||++++.|...|.. .+||+|||+|+++ +|+++++||+||+||++|++|+|.|||++|
T Consensus 400 GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~ 478 (590)
T 3kxw_A 400 GEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLM 478 (590)
T ss_dssp EEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHH
T ss_pred EEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHH
Confidence 999999999999999999888777643 3399999999999 999999999999999999999999999999
Q ss_pred hcCcCcc--eEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhccccc-ccCCe-EEEE
Q 012673 350 LQHPGII--GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG-FKAPR-LFVL 425 (458)
Q Consensus 350 ~~~~~v~--~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~-~~~p~-~~~~ 425 (458)
..+|.|. +++|++++++. ++.+++++++.++.. ...+.+++.+++++ .++. +++|. .+++
T Consensus 479 ~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~--------------~~~~~~~l~~~l~~-~l~~~~~~p~~~i~~ 542 (590)
T 3kxw_A 479 HSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFM--------------DDVAQDNLFNEIFE-LVYENHQLEVHTIVL 542 (590)
T ss_dssp HSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTC--------------CHHHHHHHHHHHHH-HHHHHHSCCCCEEEE
T ss_pred hcCccccCccEEEEEecCCC-CceEEEEEEeccccc--------------cchhHHHHHHHHHH-HHHHHcCCceeEEEE
Confidence 7889998 89999998876 778888888876421 12456778888887 5764 88885 4444
Q ss_pred e-eCCCCCCCcccchHHHHHHHHHHH
Q 012673 426 W-RKPFPLTSTGKIRRDEVRREVMSH 450 (458)
Q Consensus 426 ~-~~~lP~t~~GKv~r~~l~~~~~~~ 450 (458)
+ .++||+|++||++|+.|++++.+.
T Consensus 543 v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 543 IPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp EETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred ECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 3 278999999999999999999764
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=3.4e-57 Score=463.77 Aligned_cols=356 Identities=19% Similarity=0.254 Sum_probs=197.5
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHh--------hcCCCCceEEeccchhhHhhhHHHHHHHhcCc
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI--------VGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGA 132 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~--------~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~ 132 (458)
...++++++|+|||||||.||||+++|+++.+........ +.+...+++++..|++|..++..++.++..|+
T Consensus 171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 250 (562)
T 3ite_A 171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL 250 (562)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence 4467899999999999999999999999998776554443 34678899999999999998888899999999
Q ss_pred eEEecCCCC-hHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCcee
Q 012673 133 CHVFIPKFE-SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLI 211 (458)
Q Consensus 133 ~~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~ 211 (458)
++++.+.+. +..+++.++++++|++.++|+++..+... ....+++|.+++||+++++++.+.+.+.+ +++++
T Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~ 323 (562)
T 3ite_A 251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALV 323 (562)
T ss_dssp EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEE
T ss_pred EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEE
Confidence 999877543 46788999999999999999987765322 12357899999999999999999999877 89999
Q ss_pred eccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEec
Q 012673 212 SAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRG 285 (458)
Q Consensus 212 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g 285 (458)
+.||+||++..++........ ...++|+|+++++++++|++ .|+.|||+++|
T Consensus 324 ~~YG~TE~~~~~~~~~~~~~~----------------------~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g 381 (562)
T 3ite_A 324 NVYGPTEVTIGCSAGRILPDS----------------------DTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEG 381 (562)
T ss_dssp EEECCGGGCSCSEEEECCTTS----------------------CTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEES
T ss_pred EeeccchheeeeeeeeecCCC----------------------CCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEec
Confidence 999999998765543322111 12369999999999999865 57789999999
Q ss_pred cccchhhhcCcCCCCccc-CCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcC-cCcceEEEEee
Q 012673 286 AHVMLRYWDQFLAKPSVS-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH-PGIIGIVVVGI 363 (458)
Q Consensus 286 ~~~~~gy~~~~~~~~~~~-~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~ 363 (458)
++++.|||++++.+...+ ++++||+|||+|++++||+++++||+||+||++|+||+|.|||++|.+| +.+.+++|++.
T Consensus 382 ~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~ 461 (562)
T 3ite_A 382 SLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLL 461 (562)
T ss_dssp TTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC-----------------------------------
T ss_pred cccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEe
Confidence 999999999999887654 3345999999999999999999999999999999999999999999998 88889999998
Q ss_pred cCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccccCCeEEEEeeCCCCCC-CcccchHHH
Q 012673 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT-STGKIRRDE 442 (458)
Q Consensus 364 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t-~~GKv~r~~ 442 (458)
+++..++..+++++...+.....+... .........++|+++|++ .|+.||+|+.++++ ++||+| ++||++|+.
T Consensus 462 ~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~-~L~~y~~P~~i~~v-~~lP~t~~~GKi~r~~ 536 (562)
T 3ite_A 462 NHPGTSKQFLVSFVASSGAAVRGELRW---INENYKEINNSLRQACEQ-TLPAYMVPDFIIPI-SFIPLRDTSAKTDAKA 536 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcceEEEEEEecccccccccccc---cccchhhHHHHHHHHHHh-hCCcccCCcEEEEe-ccCCCCCCCCcchHHH
Confidence 888877776666665443211100000 000111234689999998 69999999988775 789998 999999999
Q ss_pred HHHHHHHH
Q 012673 443 VRREVMSH 450 (458)
Q Consensus 443 l~~~~~~~ 450 (458)
|++.+.+.
T Consensus 537 L~~~~~~~ 544 (562)
T 3ite_A 537 LEHMFHTL 544 (562)
T ss_dssp --------
T ss_pred HHHHHhcc
Confidence 99998754
No 31
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.8e-56 Score=460.26 Aligned_cols=375 Identities=18% Similarity=0.256 Sum_probs=292.7
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHh-hcCCCCceEEeccchhhHhhhHH-HHHHHhcCceEEecC
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI-VGYGEDDVYLHTAPLCHIGGLSS-AMAMLMVGACHVFIP 138 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~-~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~ 138 (458)
...++|+++|+|||||||.||||+++|+++..+....... +++.++|++++.+|++|.+|+.. ++.++..|+++++.+
T Consensus 172 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 172 RPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp CCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 3468999999999999999999999999998877766544 78899999999999999999854 667888999988876
Q ss_pred C----CChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhc-cccCCCCceEEEeCCCCCCHHHHHHHHhhCC-----CC
Q 012673 139 K----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-TWKGRDSVKKILNGGGGLPSELMKEATNSFP-----KA 208 (458)
Q Consensus 139 ~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-----~~ 208 (458)
. +++..+++.|+++++|+++++|+++..+.+...... ....++++|.+++||+++++++.+.+.+.|+ ++
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~ 331 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNK 331 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGG
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcc
Confidence 4 688999999999999999999999988776533222 1224578999999999999999999998874 68
Q ss_pred ceeeccccccCccceeeeeecCCCCCCCCCC-----CccccccCCCCCCCCCceEecccCCCceEEEecCC-----CCCc
Q 012673 209 KLISAYGMTETSSSLTFMTLYDPTLETPGQL-----PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV 278 (458)
Q Consensus 209 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~ 278 (458)
++++.||+||++..++............... ..................++|+|+++++++|+|++ .|+.
T Consensus 332 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~ 411 (576)
T 3gqw_A 332 TFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGMPVAERVV 411 (576)
T ss_dssp GEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEECTTSCBCCTTBC
T ss_pred cccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEECCCCCCCCCCCe
Confidence 9999999999998766543211100000000 00000000000001122368999999999999975 5788
Q ss_pred cEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCCCcEEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceE
Q 012673 279 GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 358 (458)
Q Consensus 279 Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~ 358 (458)
|||+++|++++.|||++++.+... ..+|||+|||+|++ +||+++++||+||+||++|++|+|.|||++|.+||+|.++
T Consensus 412 GEl~v~g~~~~~gY~~~~~~~~~~-~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~ 489 (576)
T 3gqw_A 412 GHICISGPSLMSGYFGDQVSQDEI-AATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSG 489 (576)
T ss_dssp EEEEEESTTSCCCBTTCHHHHHHH-HHHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCTT
T ss_pred EEEEEeCccccccccCCccccccc-cCCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccccc
Confidence 999999999999999998766554 36799999999999 7999999999999999999999999999999999999998
Q ss_pred EEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhccc-ccccCCeEEEEee-CCCCCCCcc
Q 012673 359 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL-TGFKAPRLFVLWR-KPFPLTSTG 436 (458)
Q Consensus 359 ~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-~~~~~p~~~~~~~-~~lP~t~~G 436 (458)
++++...+. +.+.++++..... ....+++.+++.+ .+ +.|++|..+.++. ++||+|++|
T Consensus 490 ~vv~~~~~~--~~~~~~~~~~~~~----------------~~~~~~l~~~l~~-~l~~~~~~p~~i~~v~~~~lP~t~~G 550 (576)
T 3gqw_A 490 DAIAFVTAQ--EKIILQIQCRISD----------------EERRGQLIHALAA-RIQSEFGVTAAIDLLPPHSIPRTSSG 550 (576)
T ss_dssp SEEEEECTT--SCEEEEEECCCCC----------------HHHHHHHHHHHHH-HHHHHHSCCEEEEEECSSCSCBCTTS
T ss_pred cEEEEEcCC--ccEEEEEEEecCc----------------hhHHHHHHHHHHH-HHHHHhCCceeEEEECCCCcCcCCCc
Confidence 888877654 3345555443321 1235677888877 46 7899999877653 379999999
Q ss_pred cchHHHHHHHHHHHhhcCCC
Q 012673 437 KIRRDEVRREVMSHLKSLPS 456 (458)
Q Consensus 437 Kv~r~~l~~~~~~~~~~~~~ 456 (458)
|++|+.|++.+.+.+++.|.
T Consensus 551 Ki~r~~l~~~~~~~~~~~~~ 570 (576)
T 3gqw_A 551 KPARAEAKKRYQKAYAASLN 570 (576)
T ss_dssp SBCHHHHHHHHHHHHTCC--
T ss_pred cchHHHHHHHHHHHhhhccc
Confidence 99999999999999988764
No 32
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=3.5e-52 Score=414.21 Aligned_cols=333 Identities=16% Similarity=0.173 Sum_probs=270.6
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHH---HhhcCCCCceEEeccch-hhHhhhHHHHHHHhcCceEEe
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVF 136 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~~v~ 136 (458)
..+++++++++|||||||.||+|+++|+++........ ..+++.++|++++.+|+ +|..++...+.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999876544332 35788999999999998 577777778889999999999
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
.+.+++..+++.|+++++|+++++|+++..|++.++........+++|.+++||+++++++.+.+.+.| ++++++.||+
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 246 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL 246 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence 888899999999999999999999999999998776544332346899999999999999999999998 8999999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccch
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVML 290 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~ 290 (458)
||+++.+......... .+ .+.+.+++.++++|++ .|+.|||+++|.
T Consensus 247 TE~~g~~~~~~~~~~~----------------------~g--~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~---- 298 (443)
T 2y4o_A 247 SEVMGPGVACECVETK----------------------DG--PVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL---- 298 (443)
T ss_dssp TTTTEEEEEEECTTTC----------------------CS--EEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES----
T ss_pred hhhcCCeEEeccCCCC----------------------Cc--eEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC----
Confidence 9974321211111000 00 4556788999999854 578899999973
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCC-CcE-----EEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeec
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDG-GNV-----WLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 364 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 364 (458)
+...+ ..+||+|||+|+++++ |++ +++||+||+||++|++|+|.+||++|.+||+|.++++++++
T Consensus 299 --------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~ 369 (443)
T 2y4o_A 299 --------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLS 369 (443)
T ss_dssp --------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred --------CcccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEe
Confidence 22223 5689999999999999 987 89999999999999999999999999999999999999988
Q ss_pred CCCCcceEEEEEEecc--ccccccccccccchhhhhhhhHHHHHHHhhhcccccc-cCCeEEEEee-CCCCCCCcccchH
Q 012673 365 NARLTEMVVACVRLRE--SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWR-KPFPLTSTGKIRR 440 (458)
Q Consensus 365 ~~~~~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~-~~lP~t~~GKv~r 440 (458)
++..++.++++|++.+ +.. ....+.+++++++++ .|+.| ++|..+.++. ++||+|++||++|
T Consensus 370 ~~~~~~~~~a~v~~~~~~~~~-------------~~~~~~~~l~~~l~~-~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r 435 (443)
T 2y4o_A 370 RDGHMDRLDLAVELRSEAAAS-------------VTDGERAALARELQH-RIKTMVGVSSGVTVLAAGGIPATATGKARR 435 (443)
T ss_dssp EETTEEEEEEEEEECHHHHTT-------------CCHHHHHHHHHHHHH-HHHHHTCCCCEEEEECTTCSCCCTTSCCCS
T ss_pred cCCCCceEEEEEEECCccccc-------------chhhHHHHHHHHHHH-HHHHHhCCceEEEEeCCCcccCccCCcceE
Confidence 7777888999999865 210 011346788899988 68877 5888766653 5899999999999
Q ss_pred HHHHH
Q 012673 441 DEVRR 445 (458)
Q Consensus 441 ~~l~~ 445 (458)
+..++
T Consensus 436 ~~~~r 440 (443)
T 2y4o_A 436 VIDRR 440 (443)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 75443
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3e-51 Score=406.62 Aligned_cols=326 Identities=18% Similarity=0.214 Sum_probs=263.0
Q ss_pred CCC-CceEEEEeccCCCCCccceecccHHHHHHHHHH---HHhhcCCCCceEEeccchhhHhh-hHHHHHHHhcCceEEe
Q 012673 62 WAP-EGAVIICFTSGTTGSPKGVVISHSALIVQSLAK---IAIVGYGEDDVYLHTAPLCHIGG-LSSAMAMLMVGACHVF 136 (458)
Q Consensus 62 ~~~-~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g-~~~~~~~l~~G~~~v~ 136 (458)
.++ +|+++++|||||||.||+|+++|+++....... ...+++.++|++++.+|+.|..+ +...+.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 456 899999999999999999999999997655444 33458899999999999865544 4667888999999999
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
.+.+++..+++.|+++++|+++++|+++..|++.++.......++++|.+++||+++++++.+.+.+.| ++++++.||+
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 240 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGM 240 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcc
Confidence 988999999999999999999999999999999877666544467999999999999999999999999 8999999999
Q ss_pred ccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccch
Q 012673 217 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVML 290 (458)
Q Consensus 217 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~~ 290 (458)
||+++.++....... . ..+.|.+++.++++|++ .|+.|||+++|..
T Consensus 241 TE~~~~~~~~~~~~~-----------------------~--g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~--- 292 (436)
T 3qov_A 241 TEMNGPGVAFECQEQ-----------------------N--GMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD--- 292 (436)
T ss_dssp GGGTEEEEEEECTTC-----------------------S--SEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS---
T ss_pred hhhcCCeeEEecCCC-----------------------C--eeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC---
Confidence 999644222221100 0 15677889999999943 5788999999832
Q ss_pred hhhcCcCCCCcccCCCceEecCceEEEeCCC------c---EEEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEE
Q 012673 291 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGG------N---VWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 361 (458)
Q Consensus 291 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 361 (458)
...+ ..+||+|||+|+++++| + ++++||+||+||++|++|+|.+||++|.+||+|.+++|+
T Consensus 293 ---------~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv 362 (436)
T 3qov_A 293 ---------REMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLI 362 (436)
T ss_dssp ---------CCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEE
T ss_pred ---------cCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEE
Confidence 2222 57899999999999998 5 699999999999999999999999999999999999999
Q ss_pred eecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccc-cCCeEEEEeeC--CCCCCCcccc
Q 012673 362 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWRK--PFPLTSTGKI 438 (458)
Q Consensus 362 ~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~~--~lP~t~~GKv 438 (458)
+++++..++.++++|++. +.... ...+.+++++++++ .|+.+ ++|..+.++ + +||+|+ ||+
T Consensus 363 ~~~~~~~~~~l~a~v~~~-~~~~~------------~~~~~~~l~~~l~~-~l~~~~~~p~~i~~v-~~~~lP~t~-GKi 426 (436)
T 3qov_A 363 TLETVNNQDEMIVEVELS-DLSTD------------NYIELEKIRRDIIR-QLKDEILVTPKVKLV-KKGSLPQSE-GKA 426 (436)
T ss_dssp EEEEETTEEEEEEEEEEC-TTCCC------------CHHHHHHHHHHHHH-HHHHHHSSCCEEEEE-CTTCCC-------
T ss_pred EEEcCCCCcEEEEEEEEc-Ccccc------------chhhHHHHHHHHHH-HHHHhcCCceEEEEe-CCCcccCcC-Ccc
Confidence 999888889999999987 42110 01235678888887 68888 899887765 6 899999 999
Q ss_pred hHHH
Q 012673 439 RRDE 442 (458)
Q Consensus 439 ~r~~ 442 (458)
+|..
T Consensus 427 ~R~~ 430 (436)
T 3qov_A 427 VRVK 430 (436)
T ss_dssp -CEE
T ss_pred eEEE
Confidence 9864
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=4.6e-51 Score=405.44 Aligned_cols=328 Identities=13% Similarity=0.134 Sum_probs=268.5
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHH---HhhcCCCCceEEeccch-hhHhhhHHHHHHHhcCceEEe
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVF 136 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~~v~ 136 (458)
..+++++++++|||||||.||+|+++|+++........ ..+++.++|++++.+|+ +|..++...+.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34678999999999999999999999999876544332 35788999999999998 788888778899999999998
Q ss_pred cCCCChHHHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCCCHHHHHHHHhhCCCCceeecccc
Q 012673 137 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 216 (458)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 216 (458)
.+.+++..+++.|+++++|+++++|+++..|++.....+.....+++|.+++||+++++++.+.+.+.| ++++++.||+
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 244 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGL 244 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCc
Confidence 888899999999999999999999999999998776544322246899999999999999999999988 8999999999
Q ss_pred ccCccc-eeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEecccCCCceEEEecCC------CCCccEEEEeccccc
Q 012673 217 TETSSS-LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVM 289 (458)
Q Consensus 217 tE~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~Gel~v~g~~~~ 289 (458)
||+++. ++... .... . ..+.+.+++.++++|++ .|+.|||+++|.
T Consensus 245 TE~~g~~~~~~~-~~~~----------------------~--g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~--- 296 (437)
T 2y27_A 245 SEVMGPGVASEC-VETK----------------------D--GPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL--- 296 (437)
T ss_dssp TTTTEEEEEECC-TTTC----------------------S--SCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES---
T ss_pred hhhcCCeeEEec-CCCC----------------------C--ceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC---
Confidence 998432 22211 1000 0 14557788999999854 578899999982
Q ss_pred hhhhcCcCCCCcccCCCceEecCceEEEeC-CCcE-----EEEeeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEee
Q 012673 290 LRYWDQFLAKPSVSTGEVWLDTGDIGSIDD-GGNV-----WLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 363 (458)
Q Consensus 290 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 363 (458)
+...+ .++||+|||+|++++ +|++ +++||+||+||++|++|+|.+||++|.+||+|.+++++++
T Consensus 297 ---------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~ 366 (437)
T 2y27_A 297 ---------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVL 366 (437)
T ss_dssp ---------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEE
T ss_pred ---------CcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEE
Confidence 22223 578999999999999 6986 8999999999999999999999999999999999999998
Q ss_pred cCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHHHHhhhcccccc-cCCeEEEEee-CCCCCCCcccchHH
Q 012673 364 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWR-KPFPLTSTGKIRRD 441 (458)
Q Consensus 364 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~-~~lP~t~~GKv~r~ 441 (458)
+++..++.++++|++.++.. ....+.+++++++++ .|+.| ++|..+.++. ++||+|+ ||++|+
T Consensus 367 ~~~~~~~~l~a~v~~~~~~~-------------~~~~~~~~l~~~l~~-~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~ 431 (437)
T 2y27_A 367 TKEGPLDVLTLNVEPCPETA-------------PDTAAIQVAKQALAY-DIKSLIGVTAVINVLPVNGIERSV-GKARRV 431 (437)
T ss_dssp EEETTEEEEEEEECBCTTTT-------------TCHHHHHHHHHHHHH-HHHHHHCCCEEEEECCTTCSCCCS-SSCCCE
T ss_pred eecCCCceEEEEEEECCCcc-------------chhhhHHHHHHHHHH-HHHHhcCCceEEEEeCCCCccCCC-CcceEE
Confidence 88777889999998876421 001345778889988 68888 5888766653 5899999 999996
Q ss_pred H
Q 012673 442 E 442 (458)
Q Consensus 442 ~ 442 (458)
.
T Consensus 432 ~ 432 (437)
T 2y27_A 432 V 432 (437)
T ss_dssp E
T ss_pred E
Confidence 4
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.6e-41 Score=341.25 Aligned_cols=264 Identities=18% Similarity=0.260 Sum_probs=202.1
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHHHhhcCCC------CceEEeccchhhHhhh-HHHHHHHhcCce
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGE------DDVYLHTAPLCHIGGL-SSAMAMLMVGAC 133 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~~~~~~~~------~d~~~~~~p~~~~~g~-~~~~~~l~~G~~ 133 (458)
...++|+++|+|||||||.||||+++|+++..+.......+++.. +|++++.+|++|.+|+ ..++.+++.|++
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~ 258 (480)
T 3t5a_A 179 EDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYP 258 (480)
T ss_dssp CSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCC
T ss_pred CCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCc
Confidence 456889999999999999999999999999988888888888877 9999999999999997 567899999999
Q ss_pred EEecCCC----ChHHHHHHHHHhcceEEeechHHHHHHHHHHHh--hccccCCCCceEEEeCCCCCCHHHHHHHHhhC--
Q 012673 134 HVFIPKF----ESKSALEAVEQHCVTSLITVPAIMADLATLIRV--KKTWKGRDSVKKILNGGGGLPSELMKEATNSF-- 205 (458)
Q Consensus 134 ~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-- 205 (458)
+++.++. ++..+++.|+++++| +.++|+++..++..... ......+++||.+++||+++++++.+++.+.|
T Consensus 259 ~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~ 337 (480)
T 3t5a_A 259 AVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFAR 337 (480)
T ss_dssp EEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGG
T ss_pred eEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhh
Confidence 9998753 899999999999999 88999998888765321 11223467999999999999999999999988
Q ss_pred ---CCCceeeccccccCccceeeeeecCCCCCCCCCCCcc--ccccCC-CCCCCCCceEecccCCCceEEEecCC-----
Q 012673 206 ---PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA--FGNVTP-NSVHQPQGVCVGKPAPHVELKVCSDG----- 274 (458)
Q Consensus 206 ---~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~G~p~~~~~~~i~d~~----- 274 (458)
+++++++.||+||++..++........... ...... .+...+ .........++|+|++ ++++|+|++
T Consensus 338 ~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~ 415 (480)
T 3t5a_A 338 FNLQERVIRPSYWLAEATVYVATSKPGQPPETV-DFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIEC 415 (480)
T ss_dssp GTCCGGGEEEEEEETTTTEEEEECCTTSSCCEE-EECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEEC
T ss_pred cCCChhhccccccccccceeEeecccCCCcceE-EecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCC
Confidence 346899999999998766543322110000 000000 000000 0000123457999999 999999975
Q ss_pred -CCCccEEEEeccccchhhhcCcCCCCcccC-----------CCceEecCceEEEeCCCcEEEEee
Q 012673 275 -SSHVGRILTRGAHVMLRYWDQFLAKPSVST-----------GEVWLDTGDIGSIDDGGNVWLVGR 328 (458)
Q Consensus 275 -~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~l~~~GR 328 (458)
.|++|||+|+|++++.|||++++.|.+.|. +++||+|||+|+++ ||+|+++||
T Consensus 416 ~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 416 PDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 578999999999999999999988887774 57899999999997 999999998
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=6.3e-32 Score=261.79 Aligned_cols=233 Identities=17% Similarity=0.190 Sum_probs=174.7
Q ss_pred CCCCCceEEEEeccCCCCCccceecccHHHHHHHHHHH---HhhcCCCCceEEeccch-hhHhhhHHHHHHHhcCceEEe
Q 012673 61 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVF 136 (458)
Q Consensus 61 ~~~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~~v~ 136 (458)
.+.++++++++|||||||.||+|+++|+++........ ..+++.++|++++.+|+ +|.+|+...+.++..|+ +++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF 165 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence 34789999999999999999999999999987766433 45577899999999999 99999987777788998 666
Q ss_pred cCCCChH-----------------------HHHHHHHHhcceEEeechHHHHHHHHHHHhhccccCCCCceEEEeCCCCC
Q 012673 137 IPKFESK-----------------------SALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGL 193 (458)
Q Consensus 137 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~l 193 (458)
...+++. .+++.|+++++|++.++|+++..|++....... ..+++|.+++||+++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~--~~~~lr~i~~gGe~l 243 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQ--MKQSLAQITLGGTEL 243 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHH--HHHHCSEEEEESSCC
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhcc--ccCCeeEEEECCccC
Confidence 6677877 888899999999999999999999877442222 246899999999999
Q ss_pred CHHHHHHHH-hhCCCCceeeccccccCccceeeeeecCCCCCCCCCCCccccccCCCCCCCCCceEeccc------CCCc
Q 012673 194 PSELMKEAT-NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKP------APHV 266 (458)
Q Consensus 194 ~~~~~~~~~-~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p------~~~~ 266 (458)
++++++.+. +.||++++++.||+||+++++..+... ++|.| .+++
T Consensus 244 ~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~~----------------------------~~G~~~~~~~~~~~~ 295 (369)
T 3hgu_A 244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLIT----------------------------SESQQVIYDSFSPFI 295 (369)
T ss_dssp CHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCBC----------------------------TTCSSCEEECCTTTE
T ss_pred CHHHHHHHHHHhCCCcEEEcccCchhhhcceeccccc----------------------------cCCCcccccCCCCCe
Confidence 999999999 999889999999999988655332110 26777 9999
Q ss_pred eEEEecCC------CCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCC--C-------cEEEEeeccc
Q 012673 267 ELKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG--G-------NVWLVGRRNG 331 (458)
Q Consensus 267 ~~~i~d~~------~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~l~~~GR~~d 331 (458)
+++|+|++ .|+.|||++++.... .+ -.+|+|||++++.+. | .+..++|.++
T Consensus 296 ~v~ivD~~~g~~vp~G~~GEl~vt~l~~~------------~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~ 361 (369)
T 3hgu_A 296 TYDVVDSITAQTVEYGERGNVIVTHLSPW------------AF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEG 361 (369)
T ss_dssp EEEEECTTTCSBCCTTCEEEEEEEEEETT------------EE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC----
T ss_pred EEEEECCCCCcCCCCCCceEEEEEEcCcc------------cc--cccccCCceEEEecCCCCCcCcccccceeccccCC
Confidence 99999973 688999999973211 11 135789999988653 2 2445667777
Q ss_pred eeeeCce
Q 012673 332 RIKSGGE 338 (458)
Q Consensus 332 ~i~~~G~ 338 (458)
..++.|.
T Consensus 362 ~~~i~gv 368 (369)
T 3hgu_A 362 RKVIEGV 368 (369)
T ss_dssp -------
T ss_pred Cceeeec
Confidence 7777664
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.62 E-value=7.2e-16 Score=120.91 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=70.5
Q ss_pred eeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHH
Q 012673 327 GRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 406 (458)
Q Consensus 327 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 406 (458)
.|.||||+++|.||+|.+||++|.+||+|.++++++++++.+++.+.++++..++..... ...+++.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~-------------~~~~~l~ 67 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDY-------------GRLQALT 67 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCH-------------HHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccccc-------------chhhhhH
Confidence 489999999999999999999999999999999999999999999999999877632111 1123333
Q ss_pred HHhhhcccc-cccCCeEEEEe-eCCCCCCCcccchHH
Q 012673 407 QHCREKNLT-GFKAPRLFVLW-RKPFPLTSTGKIRRD 441 (458)
Q Consensus 407 ~~~~~~~l~-~~~~p~~~~~~-~~~lP~t~~GKv~r~ 441 (458)
+.+++ .+. .+.++..+.++ .++||+| +||++|-
T Consensus 68 ~~i~~-~l~~~~gv~~~v~~v~~~~lPrt-sGKi~Rv 102 (109)
T 3lax_A 68 REITR-QLKDEILVTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHH-HHHHHHSSCCEEEEECTTCSCCC----CCCE
T ss_pred HHHHH-HHHHHhCCccceEEEcCCeecCC-CCCcchh
Confidence 33333 121 22344444444 2579999 7999883
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.59 E-value=2.9e-15 Score=117.25 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=68.8
Q ss_pred eeccceeeeCceeeCcHHHHHHHhcCcCcceEEEEeecCCCCcceEEEEEEeccccccccccccccchhhhhhhhHHHHH
Q 012673 327 GRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 406 (458)
Q Consensus 327 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 406 (458)
||.||+|+++|.||+|.+||++|.+||+|.++++++++++.+++.+++++++ ++....+ ..+.+++.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~------------~~~~~~l~ 67 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDD------------YGRLQALT 67 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCC------------HHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccc------------hhHHHHHH
Confidence 8999999999999999999999999999999988888887788999999998 5421000 01223344
Q ss_pred HHhhhcccc-cccCCeEEEEee-CCCCCCCcccchHH
Q 012673 407 QHCREKNLT-GFKAPRLFVLWR-KPFPLTSTGKIRRD 441 (458)
Q Consensus 407 ~~~~~~~l~-~~~~p~~~~~~~-~~lP~t~~GKv~r~ 441 (458)
+.+++ .+. .+.++..+.++. ..||+| +||++|.
T Consensus 68 ~~i~~-~l~~~~~~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 68 REITR-QLKDEILVTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHH-HHHHHHSSCCEEEEECTTCSCCC----CCCE
T ss_pred HHHHH-HHHHhhCCceEEEEECCCCccCC-CCceEEE
Confidence 44433 121 334444555542 379999 9999884
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.94 E-value=5e-09 Score=104.49 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=52.3
Q ss_pred CCCCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeC----CCcEEEEeeccceeeeCceeeCcHHHHHH
Q 012673 273 DGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAV 348 (458)
Q Consensus 273 ~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 348 (458)
-+.|+.+||+++... |.| .|++||+++++. ..++.|+||.++++++.|+++...+||++
T Consensus 381 Ve~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~a 443 (581)
T 4eql_A 381 VKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKA 443 (581)
T ss_dssp CCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHH
T ss_pred cCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHH
Confidence 347888999998643 221 389999999986 46899999999999999999999999999
Q ss_pred HhcC
Q 012673 349 LLQH 352 (458)
Q Consensus 349 l~~~ 352 (458)
|.+.
T Consensus 444 l~~a 447 (581)
T 4eql_A 444 VSQA 447 (581)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9854
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.89 E-value=3.3e-08 Score=98.32 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=56.8
Q ss_pred CCCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeCC----CcEEEEeeccceeeeCceeeCcHHHHHHH
Q 012673 274 GSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG----GNVWLVGRRNGRIKSGGENVYPEEVEAVL 349 (458)
Q Consensus 274 ~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~l~~~GR~~d~i~~~G~~v~~~~iE~~l 349 (458)
..|+.+||+++... |.| .|++||+++++.- .++.|+||.++++++.|+++++.+||+++
T Consensus 389 e~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al 451 (581)
T 4epl_A 389 KIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSV 451 (581)
T ss_dssp CTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHH
T ss_pred CCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHH
Confidence 36888999998643 221 3899999998752 57999999999999999999999999988
Q ss_pred hcC------c--CcceEEEEe
Q 012673 350 LQH------P--GIIGIVVVG 362 (458)
Q Consensus 350 ~~~------~--~v~~~~v~~ 362 (458)
.+. . .|.|..++.
T Consensus 452 ~~a~~~l~~~~~~l~eft~~~ 472 (581)
T 4epl_A 452 ESAAKRLSEEKIEVIDFSSYI 472 (581)
T ss_dssp HHHHHHHHTTTCCEEEEEEEE
T ss_pred HHHHHhhcccCCeEEEEEEec
Confidence 752 2 366776655
No 41
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.78 E-value=1.2e-08 Score=101.83 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=51.6
Q ss_pred CCCCCccEEEEeccccchhhhcCcCCCCcccCCCceEecCceEEEeC----CCcEEEEeeccceeeeCceeeCcHHHHHH
Q 012673 273 DGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAV 348 (458)
Q Consensus 273 ~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 348 (458)
-+.|+.+||+++... |+| .|++||+++++. ..++.|+||.++++++.|+++++.+||++
T Consensus 393 Ve~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~a 455 (609)
T 4b2g_A 393 VEVGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKA 455 (609)
T ss_dssp CCTTCEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHH
T ss_pred cCCCCeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHH
Confidence 346788999998642 332 289999999984 46899999999999999999999999998
Q ss_pred Hhc
Q 012673 349 LLQ 351 (458)
Q Consensus 349 l~~ 351 (458)
+.+
T Consensus 456 v~~ 458 (609)
T 4b2g_A 456 VDN 458 (609)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 42
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=80.73 E-value=22 Score=35.13 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=71.6
Q ss_pred CCceEEEEeccCC-CCCccceecccHHHHHHHHH---HHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 64 PEGAVIICFTSGT-TGSPKGVVISHSALIVQSLA---KIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 64 ~~d~a~i~~TSGT-TG~PK~v~~sh~~~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
|+.+|++....+. .+. .-.+|.+.+...... .....|+.++|++..+++-+..+ +..+++++..|+..+.++.
T Consensus 33 p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 33 GEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPINP 109 (549)
T ss_dssp TTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccCC
Confidence 5677766543221 222 235677777544433 33445889999998888765433 3456788999999888765
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHHH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLATL 170 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 170 (458)
.....+...++..++..++..+.....+...
T Consensus 110 ~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~ 141 (549)
T 3g7s_A 110 MYKSFELEHILNDSEATTLVVHSMLYENFKPV 141 (549)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHHHHHHHHH
Confidence 6778888899999999999988776665543
No 43
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=79.50 E-value=8.4 Score=38.18 Aligned_cols=87 Identities=9% Similarity=0.102 Sum_probs=64.3
Q ss_pred eecccHHHHHHHHHH---HHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CChHHHHHHHHHhcceEEe
Q 012673 83 VVISHSALIVQSLAK---IAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLI 158 (458)
Q Consensus 83 v~~sh~~~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~ 158 (458)
..+|.+.+....... ....|+.++|++..+++-+..+ +..+++++..|+..+.++. .....+...++..++.+++
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEE
Confidence 357888775544433 3445899999998888754332 3456788999998888764 7788889999999999999
Q ss_pred echHHHHHHHHH
Q 012673 159 TVPAIMADLATL 170 (458)
Q Consensus 159 ~~P~~~~~l~~~ 170 (458)
........+...
T Consensus 128 ~~~~~~~~~~~~ 139 (550)
T 3rix_A 128 VSKKGLQKILNV 139 (550)
T ss_dssp ECGGGHHHHHHH
T ss_pred EcHHHHHHHHHH
Confidence 988777666544
No 44
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=79.25 E-value=18 Score=35.61 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=69.8
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHH---HHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAK---IAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++.. .+| -.+|.+.+....... ....|+.++|++..+++-+..+ +..+++++..|+..+.++.
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCC
Confidence 3677776542 222 347888775544433 3445889999998888765432 3556788999999888765
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLAT 169 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 169 (458)
.....+...++..++..++..+.....+..
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 677888889999999999988776655544
No 45
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=77.17 E-value=21 Score=34.71 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=69.8
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++. . +-.+|.+.+........ ...++.++|++..+++-+..+ +..+++++..|+..+.++.
T Consensus 19 ~pd~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV-D--------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE-C--------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCC
Confidence 366777654 1 24578888765544443 345889999998888765432 3556788999999888765
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHHH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLAT 169 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 169 (458)
.....+...++..++..++..+.....+..
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHHHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhhHHh
Confidence 677888889999999999998876665443
No 46
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=76.01 E-value=19 Score=30.71 Aligned_cols=90 Identities=19% Similarity=0.147 Sum_probs=55.6
Q ss_pred ceEEeccch-hhHhhhHHH-HHHHhcCceEEecCC-CChHHHHHHHHHhcceEEee------chHH--HHHHHHHHHhhc
Q 012673 107 DVYLHTAPL-CHIGGLSSA-MAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLIT------VPAI--MADLATLIRVKK 175 (458)
Q Consensus 107 d~~~~~~p~-~~~~g~~~~-~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~------~P~~--~~~l~~~~~~~~ 175 (458)
.+++.+.+- .|..|...+ ...-..|-.++.... ..++.+++.+++++++++.. ++++ +..+.+.++..+
T Consensus 94 ~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~ 173 (215)
T 3ezx_A 94 LAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEK 173 (215)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTT
T ss_pred eEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcC
Confidence 344444443 788887544 344456777777764 67899999999999997766 2222 334444444332
Q ss_pred cccCCCCceEEEeCCCCCCHHHHHH
Q 012673 176 TWKGRDSVKKILNGGGGLPSELMKE 200 (458)
Q Consensus 176 ~~~~~~~lr~i~~~G~~l~~~~~~~ 200 (458)
.. ..+ .+++||.+++++..+.
T Consensus 174 ~~---~~v-~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 174 LR---DSV-KCMFGGAPVSDKWIEE 194 (215)
T ss_dssp CG---GGS-EEEEESSSCCHHHHHH
T ss_pred CC---CCC-EEEEECCCCCHHHHHH
Confidence 21 134 3788999999876543
No 47
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=74.60 E-value=32 Score=33.85 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=69.1
Q ss_pred CCceEEEEeccCCCCCccceecccHHHHHHHHH---HHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLA---KIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
|+.+|++....+ .+-.+|.+.+...... .....|+.++|++...++-+..+ +..+++++..|+..+.++.
T Consensus 32 p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~ 105 (541)
T 1v25_A 32 GRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANPR 105 (541)
T ss_dssp TTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTT
T ss_pred CCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEecCcc
Confidence 556665543211 2345788777544433 33455889999998888765432 2456788899999888765
Q ss_pred CChHHHHHHHHHhcceEEeechHHHHHHHH
Q 012673 140 FESKSALEAVEQHCVTSLITVPAIMADLAT 169 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 169 (458)
.....+...++..++.+++..+.....+..
T Consensus 106 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 135 (541)
T 1v25_A 106 LSPKEIAYILNHAEDKVLLFDPNLLPLVEA 135 (541)
T ss_dssp SCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred cCHHHHHHHHHhCCCcEEEEChhHHHHHHH
Confidence 677888899999999999998876655443
No 48
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=71.55 E-value=31 Score=33.72 Aligned_cols=85 Identities=9% Similarity=0.053 Sum_probs=62.5
Q ss_pred ecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CChHHHHHHHHHhcceEEee
Q 012673 84 VISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLIT 159 (458)
Q Consensus 84 ~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~ 159 (458)
.+|.+.+........ ...|+.++|++..+++-+..+ +..+++++..|+..+.++. ..+..+...++..++..++.
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 126 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIA 126 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEE
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEe
Confidence 478877765444333 445889999998888765433 2456788899998887764 67888899999999999998
Q ss_pred chHHHHHHHH
Q 012673 160 VPAIMADLAT 169 (458)
Q Consensus 160 ~P~~~~~l~~ 169 (458)
.+.....+..
T Consensus 127 ~~~~~~~~~~ 136 (529)
T 2v7b_A 127 SGALVQNVTQ 136 (529)
T ss_dssp EGGGHHHHHH
T ss_pred chhhhhHHHH
Confidence 8876655443
No 49
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=70.11 E-value=49 Score=32.20 Aligned_cols=97 Identities=10% Similarity=-0.013 Sum_probs=67.8
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++.. | ....+|.+.+........ ...|+.++|++..+++-+..+ +..+++++..|+..+.++.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEF-CCLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCc
Confidence 3566776542 1 124678888765444333 445889999998888765433 3456788999999888765
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADL 167 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l 167 (458)
.....+...++..++.+++..+.....+
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSAPVI 129 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchHHHH
Confidence 6778888899999999998876655443
No 50
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=69.41 E-value=33 Score=34.16 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=67.4
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHH---HHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLA---KIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++..... |. ...+|.+.+...... .....|+++||++..+++-...+ +..+++++..|+..+.++.
T Consensus 69 ~pd~~Al~~~~~~--g~--~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--GN--EKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--SC--EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--CC--EeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 4788887765331 22 345777777544433 33455899999998888765432 3456788999998887764
Q ss_pred -CChHHHHHHHHHhcceEEeechH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPA 162 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~ 162 (458)
+.+..+...++..++.+++..+.
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCHHHHHHHHHhcCCCEEEEecc
Confidence 77888899999999999988654
No 51
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=69.37 E-value=44 Score=33.08 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=69.4
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHH---Hhh-cCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIV-GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 138 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 138 (458)
.|+.+|++.... .| ..-.+|.+.+........ ... |+.++|++..+++-...+ +..+++++..|+..+.++
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEecC
Confidence 466777664421 12 124578877755444333 333 889999998888765433 245678899999888876
Q ss_pred C-CChHHHHHHHHHhcceEEeechHHHHHHH
Q 012673 139 K-FESKSALEAVEQHCVTSLITVPAIMADLA 168 (458)
Q Consensus 139 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 168 (458)
. ..+..+...++..++..++..+.....+.
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 5 67788888999999999998877665543
No 52
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=68.70 E-value=37 Score=34.41 Aligned_cols=96 Identities=20% Similarity=0.270 Sum_probs=67.4
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHH---HHH-hhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLA---KIA-IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 138 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~---~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 138 (458)
.|+.+|++... ..+|. ...+|.+.+...... ... ..|++++|++..++|....+ +..+++++..|+..+.+.
T Consensus 95 ~pd~~Al~~~~-~~~~~--~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~-v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTTC--CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCCc--eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEeeC
Confidence 46778866442 22222 245788777544433 333 56789999999998876543 345678899999877765
Q ss_pred -CCChHHHHHHHHHhcceEEeechH
Q 012673 139 -KFESKSALEAVEQHCVTSLITVPA 162 (458)
Q Consensus 139 -~~~~~~~~~~i~~~~~t~~~~~P~ 162 (458)
.+.+..+...++..++.+++....
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 478899999999999999987654
No 53
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=68.59 E-value=39 Score=32.77 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=65.3
Q ss_pred CCceEEEEeccCCCCCccceecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
|+.+|++.. .+ +..+|.+.+........ ...|+.++|++..+++-...+ +..+++++..|+..+.++.
T Consensus 16 p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~ 87 (504)
T 1t5h_X 16 PDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNPR 87 (504)
T ss_dssp TTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECTT
T ss_pred CCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCCc
Confidence 566676542 11 24578888765444333 345889999998888765433 3456788999999887765
Q ss_pred CChHHHHHHHHHhcceEEee--chHHHHHH
Q 012673 140 FESKSALEAVEQHCVTSLIT--VPAIMADL 167 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~--~P~~~~~l 167 (458)
..+..+...++..++..++. .+.....+
T Consensus 88 ~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 88 LKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp SCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred cChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 67788888999999999888 55554443
No 54
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=68.52 E-value=46 Score=31.81 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=70.3
Q ss_pred CCCceEEEEecc--CCCCCccceecccHHHHHHHHHHHHhh---cCCCCceEEeccchhhHhhhHHHHHHHhcCceEEec
Q 012673 63 APEGAVIICFTS--GTTGSPKGVVISHSALIVQSLAKIAIV---GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFI 137 (458)
Q Consensus 63 ~~~d~a~i~~TS--GTTG~PK~v~~sh~~~~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~ 137 (458)
.|+.+|++.... +.+| ....+|.+.+..........+ +. ++|++..+++-...+ +..+++++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 367777665442 2233 235678888765555444433 54 899988777765433 34567889999988877
Q ss_pred CC----CChHHHHHHHHHhcceEEeechHHHHHHHH
Q 012673 138 PK----FESKSALEAVEQHCVTSLITVPAIMADLAT 169 (458)
Q Consensus 138 ~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 169 (458)
+. .....+...++..++..++..+.....+..
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 53 456788889999999999998877666544
No 55
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=68.21 E-value=45 Score=32.98 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=66.4
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++. . +-.+|.+.+........ ...|+.++|++..+++-+..+ +..+++++..|+..+.++.
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCC
Confidence 467777653 1 13578877755444333 345889999998888765432 3456788999999888765
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMAD 166 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~ 166 (458)
.....+...++..++.+++..+.....
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 677888889999999999988765443
No 56
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=65.33 E-value=44 Score=33.75 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=65.8
Q ss_pred CCceEEEEeccCCCCCccceecccHHHHHHHHHH---HHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC-C
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAK---IAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP-K 139 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~-~ 139 (458)
|+.+|++.. +..+|. .-.+|.+.+......+ ....|++++|++..++|....+ ...+++++..|+..+.+. .
T Consensus 90 pd~~Al~~~-~~~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~~ 165 (652)
T 1pg4_A 90 GDRTAIIWE-GDDTSQ--SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFGG 165 (652)
T ss_dssp TTSEEEEEE-CSSTTC--EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCTT
T ss_pred CCceEEEEE-cCCCCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCCC
Confidence 677776643 222232 2457887775444333 3455899999999888876543 355678899999887765 4
Q ss_pred CChHHHHHHHHHhcceEEeech
Q 012673 140 FESKSALEAVEQHCVTSLITVP 161 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P 161 (458)
+.+..+...++..++.+++...
T Consensus 166 ~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 166 FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp SCHHHHHHHHHHHTCSEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEcC
Confidence 7888999999999999888754
No 57
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=65.00 E-value=29 Score=33.77 Aligned_cols=80 Identities=11% Similarity=0.024 Sum_probs=59.4
Q ss_pred ecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CChHHHHHHHHHhcceEEee
Q 012673 84 VISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLIT 159 (458)
Q Consensus 84 ~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~ 159 (458)
.+|.+.+........ ...|+.++|++..+++-+..+ +..+++++..|+..+.++. .....+...++..++.+++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 478877755444333 445889999998888765433 3456788999999888765 67788888999999999998
Q ss_pred chHHH
Q 012673 160 VPAIM 164 (458)
Q Consensus 160 ~P~~~ 164 (458)
.+...
T Consensus 107 ~~~~~ 111 (503)
T 4fuq_A 107 DPSKR 111 (503)
T ss_dssp CGGGT
T ss_pred Cchhh
Confidence 76543
No 58
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=62.01 E-value=56 Score=32.29 Aligned_cols=91 Identities=13% Similarity=0.121 Sum_probs=64.8
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHH---HHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAK---IAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++. . +-.+|.+.+....... ....++.++|++..+++-...+ +..+++++..|+..+.++.
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEcCC
Confidence 467788653 1 1247887775544433 3445889999998888765443 2456788999999888765
Q ss_pred -CChHHHHHHHHHhcceEEeechHH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAI 163 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~ 163 (458)
.....+...++..++..++.....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 677888889999999998876543
No 59
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=61.51 E-value=60 Score=31.83 Aligned_cols=90 Identities=22% Similarity=0.139 Sum_probs=63.9
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHH---HHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAK---IAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++. + +-.+|.+.+....... ....|+.++|++...++-...+ +..+++++..|+..+.++.
T Consensus 43 ~p~~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIIC---G------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEF-YIVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEc---C------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHH-HHHHHHHHHhCcEEecCCC
Confidence 467777653 1 2457888775544433 3445889999998888765433 2456788899998876654
Q ss_pred -CChHHHHHHHHHhcceEEeechH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPA 162 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~ 162 (458)
.....+...++..++.+++....
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~~ 136 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSRQ 136 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEETT
T ss_pred CCCHHHHHHHHHhcCeeEEEEccc
Confidence 67788888999999999987653
No 60
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=60.00 E-value=33 Score=36.72 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=69.2
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHH---HHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLA---KIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++.-. +| -.+|.+.+...... .....|+.++|++..+++-+..+ +..+++++..|+..+.++.
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~-~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEF-VLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHH-HHHHHHHHHcCCEEEeeCC
Confidence 47788866422 22 35788777544433 33445889999998888765332 3456788999999887764
Q ss_pred -CChHHHHHHHHHhcceEEeechHHHHHHH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAIMADLA 168 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 168 (458)
+.+..+...++..++.+++..+.....+.
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 175 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYVDKIK 175 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTTTTSH
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHHHHHH
Confidence 77888889999999999998776554443
No 61
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=59.78 E-value=34 Score=33.73 Aligned_cols=86 Identities=13% Similarity=0.049 Sum_probs=62.6
Q ss_pred eecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CChHHHHHHHHHhcceEEe
Q 012673 83 VVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLI 158 (458)
Q Consensus 83 v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~ 158 (458)
-.+|.+.+........ ...|+.++|++..+++-+..+ +..+++++..|+..+.++. .....+...++..++.+++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 129 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEF-FIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEE
T ss_pred CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEE
Confidence 3578877765444333 345899999998887754332 2456788899998887765 6778888999999999999
Q ss_pred echHHHHHHHH
Q 012673 159 TVPAIMADLAT 169 (458)
Q Consensus 159 ~~P~~~~~l~~ 169 (458)
..+.....+..
T Consensus 130 ~~~~~~~~~~~ 140 (548)
T 2d1s_A 130 SSKKGLDKVIT 140 (548)
T ss_dssp ECTTTHHHHHH
T ss_pred EcHHHHHHHHH
Confidence 98876655543
No 62
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=58.34 E-value=85 Score=30.97 Aligned_cols=100 Identities=12% Similarity=0.021 Sum_probs=68.8
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHH---HHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAK---IAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++....+ .+-.+|.+.+....... ....+++++|++..+++-...+ +..+++++..|+..+.++.
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPL-IQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHHhCcEEEEecC
Confidence 4677776654411 23457888876544433 3445889999998888765442 3456788999999888765
Q ss_pred C----ChHHHHHHHHHhcceEEeechHHHHHHH
Q 012673 140 F----ESKSALEAVEQHCVTSLITVPAIMADLA 168 (458)
Q Consensus 140 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 168 (458)
. ....+...++..++..++..+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 3 2356777889999999998887766553
No 63
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=56.67 E-value=78 Score=30.93 Aligned_cols=78 Identities=17% Similarity=0.055 Sum_probs=57.1
Q ss_pred eecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CChHHHHHHHHHhcceEEe
Q 012673 83 VVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLI 158 (458)
Q Consensus 83 v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~ 158 (458)
-.+|.+.+........ ...|+.++|++...++-+..+ +..+++++..|+..+.++. .....+...++..++..++
T Consensus 49 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (539)
T 1mdb_A 49 THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF-FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127 (539)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHH-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEE
T ss_pred CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEE
Confidence 3578877765444333 445889999998888765433 3456788899998777654 6778888899999999988
Q ss_pred ech
Q 012673 159 TVP 161 (458)
Q Consensus 159 ~~P 161 (458)
..+
T Consensus 128 ~~~ 130 (539)
T 1mdb_A 128 IPD 130 (539)
T ss_dssp EES
T ss_pred ecc
Confidence 765
No 64
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=52.70 E-value=75 Score=30.61 Aligned_cols=77 Identities=5% Similarity=-0.111 Sum_probs=58.2
Q ss_pred ecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CChHHHHHHHHHhcceEEeech
Q 012673 84 VISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVP 161 (458)
Q Consensus 84 ~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P 161 (458)
.+|.+.+..........+.-.++|++..+++-...+ +..+++++..|+..+.++. ..+..+...++..++.+++...
T Consensus 26 ~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 103 (501)
T 3ipl_A 26 SYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQS-IILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL 103 (501)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTCCSEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESS
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcc
Confidence 578888877666666655444899998888765432 3566788999999888765 6788889999999999887653
No 65
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=51.59 E-value=74 Score=30.79 Aligned_cols=76 Identities=9% Similarity=-0.010 Sum_probs=54.5
Q ss_pred ecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CChHHHHHHHHHhcceEEee
Q 012673 84 VISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLIT 159 (458)
Q Consensus 84 ~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~ 159 (458)
.+|.+.+........ ...++.++|++...++-...+ +..+++++..|+..+.++. .....+...++..++..++.
T Consensus 26 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~-~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~ 104 (512)
T 3fce_A 26 KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEM-IINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLS 104 (512)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHH-HHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEE
T ss_pred eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEe
Confidence 478877765544433 345788999988777654432 2456788999998887764 67788888999999988875
Q ss_pred c
Q 012673 160 V 160 (458)
Q Consensus 160 ~ 160 (458)
.
T Consensus 105 ~ 105 (512)
T 3fce_A 105 A 105 (512)
T ss_dssp S
T ss_pred c
Confidence 4
No 66
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=51.20 E-value=74 Score=30.84 Aligned_cols=77 Identities=12% Similarity=-0.013 Sum_probs=55.7
Q ss_pred ecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CChHHHHHHHHHhcceEEee
Q 012673 84 VISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLIT 159 (458)
Q Consensus 84 ~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~ 159 (458)
.+|.+.+........ ...++.++|++..+++-...+ +..+++++..|+..+.++. ..+..+...++..++..++.
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~-~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~ 107 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM-LATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIA 107 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHH-HHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEe
Confidence 368887765544433 445889999988777654332 3456788999998887654 67788889999999998886
Q ss_pred ch
Q 012673 160 VP 161 (458)
Q Consensus 160 ~P 161 (458)
..
T Consensus 108 ~~ 109 (521)
T 3l8c_A 108 IE 109 (521)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 67
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=49.06 E-value=1.2e+02 Score=29.81 Aligned_cols=96 Identities=11% Similarity=0.027 Sum_probs=62.2
Q ss_pred CCCceEEEEeccCCCCCcc--ceecccHHHHHHHHHHHH---hhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEec
Q 012673 63 APEGAVIICFTSGTTGSPK--GVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFI 137 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK--~v~~sh~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~ 137 (458)
.|+.+|++.. .+..+..+ .-.+|.+.+......... ..+. ++|++..+++-...+ +..+++++..|+..+.+
T Consensus 33 ~p~~~A~~~~-~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVA-TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEE-ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCchhhhcc-cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEec
Confidence 4677776543 33333332 245788877554444333 3466 799998888765443 24567889999988887
Q ss_pred CC-CChHHHHHHHHHhcceEEeech
Q 012673 138 PK-FESKSALEAVEQHCVTSLITVP 161 (458)
Q Consensus 138 ~~-~~~~~~~~~i~~~~~t~~~~~P 161 (458)
+. .....+...++..++.+++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 64 6778888899999998877653
No 68
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=45.25 E-value=1.3e+02 Score=24.97 Aligned_cols=88 Identities=19% Similarity=0.128 Sum_probs=53.1
Q ss_pred ceEEeccch-hhHhhhHHHH-HHHhcCceEEecCC-CChHHHHHHHHHhcceEEeec---hH---HHHHHHHHHHhhccc
Q 012673 107 DVYLHTAPL-CHIGGLSSAM-AMLMVGACHVFIPK-FESKSALEAVEQHCVTSLITV---PA---IMADLATLIRVKKTW 177 (458)
Q Consensus 107 d~~~~~~p~-~~~~g~~~~~-~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~---P~---~~~~l~~~~~~~~~~ 177 (458)
.+++.+.+- .|..|...+- ..-..|-.++.... ..++.+.+.+++++++.+... +. .+..+.+.++....
T Consensus 90 ~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~- 168 (210)
T 1y80_A 90 KIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGL- 168 (210)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTC-
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCC-
Confidence 344444443 7777764443 33456777776664 567899999999999987653 22 34444444443321
Q ss_pred cCCCCceEEEeCCCCCCHHHH
Q 012673 178 KGRDSVKKILNGGGGLPSELM 198 (458)
Q Consensus 178 ~~~~~lr~i~~~G~~l~~~~~ 198 (458)
.+.+ .+++||..++++..
T Consensus 169 --~~~~-~v~vGG~~~~~~~~ 186 (210)
T 1y80_A 169 --RDRV-KVIVGGAPLSQDFA 186 (210)
T ss_dssp --GGGC-EEEEESTTCCHHHH
T ss_pred --CCCC-eEEEECCCCCHHHH
Confidence 1234 47778888887654
No 69
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=43.83 E-value=1.2e+02 Score=29.73 Aligned_cols=85 Identities=12% Similarity=-0.009 Sum_probs=61.0
Q ss_pred eecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CC-------hHHHHHHHHH
Q 012673 83 VVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FE-------SKSALEAVEQ 151 (458)
Q Consensus 83 v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~-------~~~~~~~i~~ 151 (458)
-.+|.+.+........ ...++.++|++..+++-...+ +..+++++..|+..+.++. .. ...+...++.
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 4578888765544433 345889999998888765433 3456788999998887764 33 5677888999
Q ss_pred hcceEEeechHHHHHHH
Q 012673 152 HCVTSLITVPAIMADLA 168 (458)
Q Consensus 152 ~~~t~~~~~P~~~~~l~ 168 (458)
.++..++........+.
T Consensus 127 ~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 127 CQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HCCSEEEECGGGHHHHH
T ss_pred cCCCEEEecHHHHHHHH
Confidence 99999998877665544
No 70
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=40.25 E-value=2e+02 Score=28.71 Aligned_cols=88 Identities=10% Similarity=-0.007 Sum_probs=60.6
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHHH---HHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAK---IAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++. .. -.+|.+.+....... ....++.++|++..+++-+..+ +..+++++.+|+..+.++.
T Consensus 40 ~Pd~~Av~~-~~--------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~-vva~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRD-RF--------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRES-ITCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEE-TT--------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEc-CC--------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEeeCc
Confidence 466777553 21 247887775444333 3445889999998888755433 3556788999999888875
Q ss_pred -CChHHHHHHHHHhcceEEeec
Q 012673 140 -FESKSALEAVEQHCVTSLITV 160 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~ 160 (458)
.....+...++..++..++..
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEEC
T ss_pred cChHHHHHHHHHhCCCcEEEec
Confidence 556777788888999888743
No 71
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=38.19 E-value=1.5e+02 Score=27.07 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=17.0
Q ss_pred CCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC
Q 012673 103 YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 138 (458)
Q Consensus 103 ~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 138 (458)
..++|.++...|.++.+.. .+...|..++.++
T Consensus 106 ~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~ 137 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFYS----VIEGNGRRVISSD 137 (391)
T ss_dssp SCTTCEEEECSSCCHHHHH----HHHHTTCEEEECC
T ss_pred CCCCCeEEECCCCcHHHHH----HHHHcCCEEEEee
Confidence 3566777666665554221 2234566665554
No 72
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=36.29 E-value=1.8e+02 Score=28.03 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=53.9
Q ss_pred eecccHHHHHHHHHHHHhh----cCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC-CCChHHHHHHHHHhcceEE
Q 012673 83 VVISHSALIVQSLAKIAIV----GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP-KFESKSALEAVEQHCVTSL 157 (458)
Q Consensus 83 v~~sh~~~~~~~~~~~~~~----~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~ 157 (458)
-.+|.+.+..........+ +..+++++...++-...+ +..+++++..|+..+.++ ......+...++..++.++
T Consensus 25 ~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l 103 (511)
T 3e7w_A 25 QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHM-IVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELL 103 (511)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHH-HHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEE
T ss_pred ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHH-HHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEE
Confidence 4578888866655544433 455778877766543322 345678899999887775 4778888899999999988
Q ss_pred ee
Q 012673 158 IT 159 (458)
Q Consensus 158 ~~ 159 (458)
+.
T Consensus 104 i~ 105 (511)
T 3e7w_A 104 IH 105 (511)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 73
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=34.71 E-value=1.4e+02 Score=29.63 Aligned_cols=89 Identities=15% Similarity=0.009 Sum_probs=62.3
Q ss_pred CCceEEEEeccCCCCCccceecccHHHHHHHHHHH---HhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-
Q 012673 64 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 139 (458)
Q Consensus 64 ~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~- 139 (458)
|+.+|++. | .-.+|.+.+........ ...|+.++|++..+++-+..+ +..+++++.+|+..+.++.
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~-vva~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAEL-YITFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHH-HHHHHHHHhcCeEEccCCcc
Confidence 77777653 1 23478877754444333 345889999998888764433 3456888999998876654
Q ss_pred CChHHHHHHHHHhcceEEeechH
Q 012673 140 FESKSALEAVEQHCVTSLITVPA 162 (458)
Q Consensus 140 ~~~~~~~~~i~~~~~t~~~~~P~ 162 (458)
.....+...++..++.+++....
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~~ 131 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADRQ 131 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEETT
T ss_pred ccHHHHHHHHhhcCceEEEeccc
Confidence 66777888899999998887643
No 74
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=29.34 E-value=2.3e+02 Score=24.47 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=52.3
Q ss_pred eEEeccch-hhHhhhHHHH-HHHhcCceEEecC-CCChHHHHHHHHHhcceEEeec---h---HHHHHHHHHHHhhcccc
Q 012673 108 VYLHTAPL-CHIGGLSSAM-AMLMVGACHVFIP-KFESKSALEAVEQHCVTSLITV---P---AIMADLATLIRVKKTWK 178 (458)
Q Consensus 108 ~~~~~~p~-~~~~g~~~~~-~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~---P---~~~~~l~~~~~~~~~~~ 178 (458)
+++.+.+- .|..|...+- ..-..|-.++... ...+..+.+.+++++++++... + ..+..+.+.++..+.
T Consensus 126 vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~-- 203 (258)
T 2i2x_B 126 VVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGI-- 203 (258)
T ss_dssp EEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTC--
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCC--
Confidence 34444443 7877764433 3345677776665 4678899999999999987653 2 234445555443322
Q ss_pred CCCCceEEEeCCCCCCHHHH
Q 012673 179 GRDSVKKILNGGGGLPSELM 198 (458)
Q Consensus 179 ~~~~lr~i~~~G~~l~~~~~ 198 (458)
.+ .+++||..++++..
T Consensus 204 ---~~-~v~vGG~~~~~~~~ 219 (258)
T 2i2x_B 204 ---KI-PFACGGGAVNQDFV 219 (258)
T ss_dssp ---CC-CEEEESTTCCHHHH
T ss_pred ---CC-cEEEECccCCHHHH
Confidence 23 47778888886643
No 75
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=28.44 E-value=3.3e+02 Score=24.48 Aligned_cols=45 Identities=11% Similarity=-0.041 Sum_probs=25.0
Q ss_pred CCCceEEec-cchhhHhhhHHHHHHHhcCceEEecCC------CChHHHHHHHHH
Q 012673 104 GEDDVYLHT-APLCHIGGLSSAMAMLMVGACHVFIPK------FESKSALEAVEQ 151 (458)
Q Consensus 104 ~~~d~~~~~-~p~~~~~g~~~~~~~l~~G~~~v~~~~------~~~~~~~~~i~~ 151 (458)
.++|.++.. .+.+|... .. .....|..++.++- .+++.+.+.+++
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~--~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 135 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-AD--CLRSYGAQVDVVRPLKIGESVPLELITEKLSQ 135 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HH--HHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH
T ss_pred CCCCeEEEEcCCcchHHH-HH--HHHHcCCceEEEecCCCCCCCCHHHHHHHHhc
Confidence 578877655 55665542 11 22356888776653 355555555544
No 76
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=25.91 E-value=1.7e+02 Score=26.27 Aligned_cols=45 Identities=9% Similarity=0.083 Sum_probs=27.0
Q ss_pred CCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC--C-----CChHHHHHHHHH
Q 012673 103 YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP--K-----FESKSALEAVEQ 151 (458)
Q Consensus 103 ~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~--~-----~~~~~~~~~i~~ 151 (458)
..++|.++...|-++..... ....|..++.++ . .+++.+.+.+++
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 141 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPDYAITPENFAQTIEE 141 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHH
T ss_pred hCCCCEEEEccCcchHHHHH----HHHcCCeEEEeecccCCCCCcCHHHHHHHHHh
Confidence 46788888777776654322 345688877766 2 245555555543
No 77
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=25.72 E-value=2.6e+02 Score=25.24 Aligned_cols=56 Identities=18% Similarity=0.046 Sum_probs=32.6
Q ss_pred CCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC-----CCChHHHHHHHHHhcceEEeec
Q 012673 103 YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP-----KFESKSALEAVEQHCVTSLITV 160 (458)
Q Consensus 103 ~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~-----~~~~~~~~~~i~~~~~t~~~~~ 160 (458)
+.++|.++...+-+|...+ ...+...|..++.++ ..+++.+.+.+++.++..++..
T Consensus 95 ~~~gd~vl~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 155 (393)
T 3kgw_A 95 LEPGDSFLTGTNGIWGMRA--AEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLV 155 (393)
T ss_dssp CCTTCEEEEEESSHHHHHH--HHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCCEEEEEeCCchhHHH--HHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEe
Confidence 5688887766554443221 223345677777654 2567777777776565554443
No 78
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=24.83 E-value=2.1e+02 Score=26.08 Aligned_cols=52 Identities=19% Similarity=0.022 Sum_probs=30.5
Q ss_pred CCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC-----CCChHHHHHHHHHhcceE
Q 012673 103 YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP-----KFESKSALEAVEQHCVTS 156 (458)
Q Consensus 103 ~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~-----~~~~~~~~~~i~~~~~t~ 156 (458)
+.++|.++...|-++.+.+. -.+...|..++.++ ..+++.+.+.+++.++..
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 146 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAERAV--EMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKC 146 (396)
T ss_dssp CCTTCEEEEEESSHHHHHHH--HHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSE
T ss_pred cCCCCeEEEEcCCcccHHHH--HHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCE
Confidence 46788888777777765311 13345677776665 245666666665434333
No 79
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=23.67 E-value=2.3e+02 Score=25.77 Aligned_cols=50 Identities=24% Similarity=0.050 Sum_probs=27.6
Q ss_pred CCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-----CChHHHHHHHHHhcc
Q 012673 103 YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-----FESKSALEAVEQHCV 154 (458)
Q Consensus 103 ~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~ 154 (458)
..++|.++...|.++...+. -.....|..++.++. .+++.+.+.+++.++
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~ 160 (393)
T 1vjo_A 106 VEPGDVVLIGVAGYFGNRLV--DMAGRYGADVRTISKPWGEVFSLEELRTALETHRP 160 (393)
T ss_dssp CCTTCEEEEEESSHHHHHHH--HHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCC
T ss_pred cCCCCEEEEEcCChhHHHHH--HHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCc
Confidence 35778887777776652211 123345777666542 455655555554333
No 80
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=22.71 E-value=1.9e+02 Score=26.56 Aligned_cols=54 Identities=20% Similarity=0.168 Sum_probs=32.0
Q ss_pred cCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-----CChHHHHHHHHHh--cceEEee
Q 012673 102 GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-----FESKSALEAVEQH--CVTSLIT 159 (458)
Q Consensus 102 ~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~--~~t~~~~ 159 (458)
+..++|.++...|-++.... .....|+.++.++- .+++.+.+.+++. ++..++.
T Consensus 68 ~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~ 128 (394)
T 1o69_A 68 GVKQDDIVLASSFTFIASVA----PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALIL 128 (394)
T ss_dssp TCCTTCEEEEESSSCGGGTH----HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEE
T ss_pred CCCCCCEEEECCCccHHHHH----HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEE
Confidence 45788988887777766532 22346888777652 3556665666543 3444443
No 81
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=22.19 E-value=3.9e+02 Score=29.48 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=62.8
Q ss_pred CCCceEEEEeccCCCCCccceecccHHHHHHHHH---HHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC
Q 012673 63 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLA---KIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 139 (458)
Q Consensus 63 ~~~d~a~i~~TSGTTG~PK~v~~sh~~~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 139 (458)
.|+.+|++ +. +-.+|.+.+...... .....|+.+++++..+++-+..+ +..+++.+.+|+..+.++.
T Consensus 477 ~p~~~Av~-~~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~-vv~~lailkaG~~~vpldp 546 (1304)
T 2vsq_A 477 NPDAPALT-YS--------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLEL-VIGILGVLKAGAAYLPVDP 546 (1304)
T ss_dssp CTTSEEEE-SS--------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEE-EC--------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEECC
Confidence 36777754 32 124677777544433 33445889999998888765433 2566888999999888775
Q ss_pred -CChHHHHHHHHHhcceEEeechHH
Q 012673 140 -FESKSALEAVEQHCVTSLITVPAI 163 (458)
Q Consensus 140 -~~~~~~~~~i~~~~~t~~~~~P~~ 163 (458)
.....+...++..++.+++..+..
T Consensus 547 ~~p~~rl~~il~~~~~~~vl~~~~~ 571 (1304)
T 2vsq_A 547 KLPEDRISYMLADSAAACLLTHQEM 571 (1304)
T ss_dssp TSCHHHHHHHHHHHTCCEEEECSTT
T ss_pred CCHHHHHHHHHHHcCCCEEEECcch
Confidence 556777888899999988876543
No 82
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=21.85 E-value=2.4e+02 Score=25.32 Aligned_cols=54 Identities=7% Similarity=-0.085 Sum_probs=33.3
Q ss_pred CCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-----CChHHHHHHHHHhcceEEe
Q 012673 103 YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-----FESKSALEAVEQHCVTSLI 158 (458)
Q Consensus 103 ~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~ 158 (458)
++++|.++...+.+|...+. ..+...|..++.++- .+++.+.+.++++++..++
T Consensus 74 ~~~gd~vi~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~ 132 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFGDRWE--QIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVA 132 (384)
T ss_dssp CCTTCEEEEECSSHHHHHHH--HHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEE
T ss_pred cCCCCEEEEecCCcchHHHH--HHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 57889888777776653221 123456877777652 4677777777765544443
No 83
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=21.74 E-value=2.4e+02 Score=27.90 Aligned_cols=93 Identities=10% Similarity=0.057 Sum_probs=55.8
Q ss_pred ceEEeccch-hhHhhhHHHH-HHHhcCceEEecCC-CChHHHHHHHHHhcceEEeec---hHHHH---HHHHHHHhhccc
Q 012673 107 DVYLHTAPL-CHIGGLSSAM-AMLMVGACHVFIPK-FESKSALEAVEQHCVTSLITV---PAIMA---DLATLIRVKKTW 177 (458)
Q Consensus 107 d~~~~~~p~-~~~~g~~~~~-~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~---P~~~~---~l~~~~~~~~~~ 177 (458)
.+++.+.+- .|..|...+- ..-..|-.++.+.. ..+..+++.+++++++++.+. ...+. .+.+.++..+.
T Consensus 100 kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~~Lr~~g~- 178 (579)
T 3bul_A 100 KMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGF- 178 (579)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHTTC-
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHHHHHHcCC-
Confidence 344444443 7887774433 34456777776654 678999999999999988653 22333 33344333221
Q ss_pred cCCCCceEEEeCCCCCCHHHHH-HHHhhC
Q 012673 178 KGRDSVKKILNGGGGLPSELMK-EATNSF 205 (458)
Q Consensus 178 ~~~~~lr~i~~~G~~l~~~~~~-~~~~~~ 205 (458)
.++ +++||..++.+... .+...+
T Consensus 179 ----~i~-ViVGGa~~~~~~a~~~i~p~~ 202 (579)
T 3bul_A 179 ----TIP-LLIGGATTSKAHTAVKIEQNY 202 (579)
T ss_dssp ----CSC-EEEESTTCCHHHHHHHTGGGC
T ss_pred ----CCe-EEEEccccchhhhhhhhhhcc
Confidence 343 67888888887653 344344
No 84
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=21.05 E-value=2.8e+02 Score=25.14 Aligned_cols=51 Identities=14% Similarity=-0.005 Sum_probs=27.9
Q ss_pred CCCCceEEeccchhhHhhhHHHHHHHhcCceEEecC-----CCChHHHHHHHHHhcce
Q 012673 103 YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP-----KFESKSALEAVEQHCVT 155 (458)
Q Consensus 103 ~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~-----~~~~~~~~~~i~~~~~t 155 (458)
+.++|.++...|-++...+.. .+-..|..++.++ ..+++.+.+.+++.++.
T Consensus 91 ~~~gd~vl~~~~~~~~~~~~~--~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~ 146 (393)
T 2huf_A 91 LEDGDVILIGHTGHWGDRSAD--MATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPS 146 (393)
T ss_dssp CCTTCEEEEEESSHHHHHHHH--HHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCS
T ss_pred hCCCCEEEEECCCcchHHHHH--HHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCc
Confidence 457888877777666532111 1234577776655 24556655555543333
No 85
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=20.79 E-value=2.5e+02 Score=26.89 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=54.2
Q ss_pred eecccHHHHHHHHHHHHhhcCCCCceEEeccchhhHhhhHHHHHHHhcCceEEecCC-CChHHHHHHHHHhcceEEeech
Q 012673 83 VVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVP 161 (458)
Q Consensus 83 v~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P 161 (458)
-.+|.+.+..........+ ..++++..+++-...+ +..+++++..|+..+.++. .....+...++..++.+++..+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~~~~~-~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI--GGAGRVAVWATPAMET-GVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC--C---CEEEECCSSHHH-HHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred eeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 3578888877666665544 4678887777654332 3456788899999887764 6778888899999999998765
Q ss_pred H
Q 012673 162 A 162 (458)
Q Consensus 162 ~ 162 (458)
.
T Consensus 124 ~ 124 (505)
T 3nyq_A 124 D 124 (505)
T ss_dssp T
T ss_pred c
Confidence 3
No 86
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=20.37 E-value=16 Score=31.13 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=14.9
Q ss_pred ccCCCCCccceecccHHHH
Q 012673 73 TSGTTGSPKGVVISHSALI 91 (458)
Q Consensus 73 TSGTTG~PK~v~~sh~~~~ 91 (458)
+|+.|| ||||+-.++..-
T Consensus 3 ~~~~tg-pkgvi~d~~~~~ 20 (217)
T 2trc_P 3 QATHTG-PKGVINDWRKFK 20 (217)
T ss_dssp SCCSSH-HHHHHHHHHHHH
T ss_pred CCCCCC-cchHHHHHHHHH
Confidence 688899 999998877764
No 87
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.07 E-value=3.3e+02 Score=21.50 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=53.6
Q ss_pred ceEEeccch-hhHhhhHHHHHHH-hcCceEEecCC-CChHHHHHHHHHhcceEEeech------HHHHHHHHHHHhhccc
Q 012673 107 DVYLHTAPL-CHIGGLSSAMAML-MVGACHVFIPK-FESKSALEAVEQHCVTSLITVP------AIMADLATLIRVKKTW 177 (458)
Q Consensus 107 d~~~~~~p~-~~~~g~~~~~~~l-~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P------~~~~~l~~~~~~~~~~ 177 (458)
.+++.+.+. .|..|...+-..| ..|-.++.... ..++.+.+.+++++++++...- ..+..+.+.++..+.
T Consensus 20 ~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~- 98 (161)
T 2yxb_A 20 KVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGA- 98 (161)
T ss_dssp EEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTC-
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCC-
Confidence 344443333 6777764443333 45666776664 6788999999999999876532 233444444443221
Q ss_pred cCCCCceEEEeCCCCCCHHHHHHHHhhCCCCc
Q 012673 178 KGRDSVKKILNGGGGLPSELMKEATNSFPKAK 209 (458)
Q Consensus 178 ~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~~ 209 (458)
..++ +++||.+ .++....+++. |+.
T Consensus 99 ---~~i~-v~vGG~~-~~~~~~~l~~~--G~d 123 (161)
T 2yxb_A 99 ---DDIP-VVLGGTI-PIPDLEPLRSL--GIR 123 (161)
T ss_dssp ---TTSC-EEEEECC-CHHHHHHHHHT--TCC
T ss_pred ---CCCE-EEEeCCC-chhcHHHHHHC--CCc
Confidence 2343 5666654 45444555543 553
Done!