Query 012674
Match_columns 458
No_of_seqs 295 out of 1242
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02125 PA_VSR PA_VSR: Proteas 99.9 4.1E-27 8.9E-32 208.8 14.5 125 61-186 1-127 (127)
2 cd02123 PA_C_RZF_like PA_C-RZF 99.9 6.2E-22 1.3E-26 181.1 16.0 122 52-181 21-142 (153)
3 cd02126 PA_EDEM3_like PA_EDEM3 99.9 6.1E-22 1.3E-26 175.5 13.7 118 57-186 2-126 (126)
4 cd02122 PA_GRAIL_like PA _GRAI 99.9 9.3E-22 2E-26 177.0 14.2 118 57-186 17-138 (138)
5 cd02127 PA_hPAP21_like PA_hPAP 99.9 1.4E-21 3.1E-26 171.3 14.2 114 61-187 1-117 (118)
6 cd02132 PA_GO-like PA_GO-like: 99.9 7.6E-21 1.7E-25 171.2 14.9 121 52-186 16-139 (139)
7 cd04813 PA_1 PA_1: Protease-as 99.8 2.6E-19 5.7E-24 156.8 11.4 106 57-178 5-111 (117)
8 cd04816 PA_SaNapH_like PA_SaNa 99.8 6.1E-18 1.3E-22 148.8 14.2 114 61-186 7-122 (122)
9 cd02129 PA_hSPPL_like PA_hSPPL 99.8 4.6E-18 9.9E-23 149.2 11.7 91 79-182 27-118 (120)
10 cd02130 PA_ScAPY_like PA_ScAPY 99.8 1.5E-17 3.2E-22 146.2 14.1 114 55-186 9-122 (122)
11 cd04818 PA_subtilisin_1 PA_sub 99.7 3.6E-17 7.8E-22 142.8 13.8 113 59-186 2-118 (118)
12 KOG3920 Uncharacterized conser 99.7 5.9E-18 1.3E-22 151.9 5.3 127 42-181 34-166 (193)
13 KOG4628 Predicted E3 ubiquitin 99.6 2E-15 4.4E-20 152.9 13.3 116 54-180 35-151 (348)
14 cd04817 PA_VapT_like PA_VapT_l 99.6 3.6E-15 7.8E-20 134.2 13.4 104 62-182 27-137 (139)
15 cd02124 PA_PoS1_like PA_PoS1_l 99.6 3.5E-15 7.5E-20 132.9 13.0 92 79-186 38-129 (129)
16 PF02225 PA: PA domain; Inter 99.5 2E-14 4.4E-19 120.8 7.6 97 67-176 2-101 (101)
17 cd00538 PA PA: Protease-associ 99.5 1.4E-13 3.1E-18 119.8 11.1 99 80-186 28-126 (126)
18 cd02133 PA_C5a_like PA_C5a_lik 99.4 3.4E-12 7.4E-17 115.2 14.4 107 60-187 15-121 (143)
19 cd04819 PA_2 PA_2: Protease-as 99.4 8.8E-12 1.9E-16 110.6 13.8 105 68-185 20-126 (127)
20 KOG2442 Uncharacterized conser 99.4 2E-12 4.4E-17 134.0 11.0 122 55-189 55-178 (541)
21 cd04815 PA_M28_2 PA_M28_2: Pro 99.3 8.9E-12 1.9E-16 111.7 8.8 109 62-186 8-134 (134)
22 cd02120 PA_subtilisin_like PA_ 99.1 1E-09 2.2E-14 96.3 9.9 84 81-180 36-120 (126)
23 cd02128 PA_TfR PA_TfR: Proteas 99.0 1.9E-09 4.1E-14 101.3 11.4 116 58-178 16-155 (183)
24 cd02121 PA_GCPII_like PA_GCPII 98.5 6.4E-07 1.4E-11 86.8 10.6 123 69-204 43-207 (220)
25 cd04822 PA_M28_1_3 PA_M28_1_3: 98.3 6.1E-06 1.3E-10 75.6 11.9 103 62-178 12-134 (151)
26 cd02131 PA_hNAALADL2_like PA_h 98.3 1.6E-06 3.5E-11 79.0 7.2 104 68-177 12-138 (153)
27 cd04814 PA_M28_1 PA_M28_1: Pro 98.3 3.4E-06 7.3E-11 76.5 8.2 72 57-135 9-100 (142)
28 cd04820 PA_M28_1_1 PA_M28_1_1: 98.1 1.5E-05 3.3E-10 71.8 8.5 64 68-135 19-96 (137)
29 cd03023 DsbA_Com1_like DsbA fa 97.1 0.02 4.4E-07 50.5 14.5 86 309-405 68-153 (154)
30 PF13462 Thioredoxin_4: Thiore 96.4 0.087 1.9E-06 47.1 13.2 152 194-405 9-160 (162)
31 cd04821 PA_M28_1_2 PA_M28_1_2: 95.1 0.045 9.7E-07 50.6 5.9 63 70-134 21-102 (157)
32 cd03024 DsbA_FrnE DsbA family, 93.4 0.32 6.9E-06 45.4 7.9 90 309-405 109-200 (201)
33 KOG2195 Transferrin receptor a 93.3 0.38 8.1E-06 54.3 9.5 220 62-319 149-411 (702)
34 cd03019 DsbA_DsbA DsbA family, 91.2 0.47 1E-05 43.1 5.8 60 330-396 99-158 (178)
35 cd03022 DsbA_HCCA_Iso DsbA fam 90.8 0.46 9.9E-06 43.8 5.5 88 310-404 102-190 (192)
36 PF01323 DSBA: DSBA-like thior 89.4 0.53 1.2E-05 43.4 4.7 90 309-405 101-192 (193)
37 PRK10954 periplasmic protein d 78.5 2.4 5.2E-05 40.4 3.9 75 309-394 106-180 (207)
38 KOG3160 Gamma-interferon induc 71.7 5.9 0.00013 38.7 4.6 166 196-411 38-208 (220)
39 PF07172 GRP: Glycine rich pro 62.3 4.3 9.4E-05 34.5 1.4 27 9-36 1-27 (95)
40 COG1651 DsbG Protein-disulfide 56.6 27 0.00059 33.6 6.1 88 309-405 150-239 (244)
41 PF13192 Thioredoxin_3: Thiore 53.9 7.3 0.00016 30.9 1.3 25 379-403 47-73 (76)
42 TIGR00411 redox_disulf_1 small 52.3 16 0.00034 28.5 3.1 27 379-405 51-78 (82)
43 COG4882 Predicted aminopeptida 47.1 1.1E+02 0.0023 32.6 8.7 80 101-188 90-171 (486)
44 cd03025 DsbA_FrnE_like DsbA fa 46.9 33 0.00072 31.4 4.8 76 309-391 103-179 (193)
45 TIGR02196 GlrX_YruB Glutaredox 44.4 47 0.001 24.7 4.6 26 379-405 48-73 (74)
46 TIGR02194 GlrX_NrdH Glutaredox 41.4 44 0.00096 25.9 4.1 55 334-403 16-70 (72)
47 COG1786 Swiveling domain assoc 41.3 1.9E+02 0.0042 26.0 8.3 76 94-185 44-122 (131)
48 cd03026 AhpF_NTD_C TRX-GRX-lik 37.6 29 0.00062 28.7 2.5 25 378-402 62-87 (89)
49 cd03027 GRX_DEP Glutaredoxin ( 37.6 50 0.0011 25.5 3.8 46 334-393 18-63 (73)
50 TIGR02181 GRX_bact Glutaredoxi 34.8 55 0.0012 25.6 3.7 47 334-394 16-62 (79)
51 PF07645 EGF_CA: Calcium-bindi 33.8 15 0.00033 25.9 0.3 25 425-454 2-26 (42)
52 cd03021 DsbA_GSTK DsbA family, 33.2 32 0.0007 32.5 2.5 58 334-395 136-198 (209)
53 cd03418 GRX_GRXb_1_3_like Glut 31.2 68 0.0015 24.5 3.6 48 334-394 17-64 (75)
54 COG2234 Iap Predicted aminopep 29.9 1.5E+02 0.0032 31.1 7.0 84 101-188 104-188 (435)
55 cd03082 TRX_Fd_NuoE_W_FDH_beta 29.4 61 0.0013 25.8 3.1 22 383-405 48-69 (72)
56 cd03028 GRX_PICOT_like Glutare 29.1 76 0.0016 25.9 3.7 47 334-394 30-76 (90)
57 COG2761 FrnE Predicted dithiol 27.3 2.3E+02 0.0051 27.9 7.3 90 309-405 118-209 (225)
58 PF13743 Thioredoxin_5: Thiore 26.4 66 0.0014 29.9 3.2 72 311-389 83-155 (176)
59 PF06764 DUF1223: Protein of u 25.1 1E+02 0.0022 29.7 4.3 55 352-410 45-99 (202)
60 cd04727 pdxS PdxS is a subunit 24.9 91 0.002 31.7 4.0 66 112-180 16-88 (283)
61 TIGR00412 redox_disulf_2 small 24.4 68 0.0015 25.3 2.5 25 379-403 47-73 (76)
62 COG5540 RING-finger-containing 24.1 25 0.00053 36.0 -0.1 34 103-136 149-182 (374)
63 COG0695 GrxC Glutaredoxin and 23.9 1.5E+02 0.0032 23.9 4.4 57 333-401 17-73 (80)
64 PF13510 Fer2_4: 2Fe-2S iron-s 21.9 61 0.0013 26.4 1.8 62 384-448 5-69 (82)
65 cd03081 TRX_Fd_NuoE_FDH_gamma 21.7 1E+02 0.0022 24.8 3.1 22 383-405 56-77 (80)
66 PRK03955 hypothetical protein; 21.1 6.1E+02 0.013 22.8 8.7 68 100-185 50-120 (131)
67 TIGR00365 monothiol glutaredox 20.7 1.2E+02 0.0026 25.3 3.5 49 333-395 33-81 (97)
No 1
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.95 E-value=4.1e-27 Score=208.85 Aligned_cols=125 Identities=61% Similarity=1.032 Sum_probs=104.1
Q ss_pred ccCCCCCCCceEEEEEecCCCCCCCCCCCCCC-CCC-CCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCc
Q 012674 61 NFGIPDYGGFMVGSVIYPDKGASGCQPFEGDK-PFK-SKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL 138 (458)
Q Consensus 61 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~-~~~-~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l 138 (458)
|||.|+||++++|.|+|++++.+||+++.... +.+ .....++||||+||+|+|.+|++|||++||+||||||+.++++
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 80 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL 80 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 79999999999999999989999999987321 111 0134589999999999999999999999999999999988877
Q ss_pred cccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEEE
Q 012674 139 ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (458)
Q Consensus 139 ~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (458)
++|..++++. +.++..+++||+++|++++|+.|++.+++|..|++++
T Consensus 81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 8887654321 1134457899999999999999999999999998864
No 2
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.88 E-value=6.2e-22 Score=181.06 Aligned_cols=122 Identities=26% Similarity=0.438 Sum_probs=101.1
Q ss_pred ceeeeccccccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEE
Q 012674 52 RSKHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVA 131 (458)
Q Consensus 52 ~~~~~~~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~ 131 (458)
...|+..+|+||.+++++.++|.|++ ++|.+||+++++.+ .......++||||+||+|+|.+|++|||++||+|||||
T Consensus 21 ~~~~~~~~A~FG~~~~~~~~~g~lv~-~~p~~gC~~~~~~~-~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~ 98 (153)
T cd02123 21 TDEFDDLPANFGPIPPGSGLKGVLVV-AEPLNACSPIENPP-LNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVY 98 (153)
T ss_pred cceEeeecccCCCCCCCCceEEEEEe-CCccccCCCCcccc-cccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEE
Confidence 34689999999999999999999887 56889999987422 11233459999999999999999999999999999999
Q ss_pred eCCCCCccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCe
Q 012674 132 DSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEE 181 (458)
Q Consensus 132 dn~~e~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~ 181 (458)
|+.++++..|...+. ...+++||+++|++++|+.|++.++.++.
T Consensus 99 n~~~~~~~~m~~~~~------~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 99 NDESNDLISMSGNDQ------EIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred ECCCCcceeccCCCC------CCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 998777777753221 12468999999999999999999998876
No 3
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.88 E-value=6.1e-22 Score=175.51 Aligned_cols=118 Identities=25% Similarity=0.401 Sum_probs=95.2
Q ss_pred ccccccCCCCCC-CceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q 012674 57 SAIGNFGIPDYG-GFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVD 135 (458)
Q Consensus 57 ~~~A~FG~~~yg-~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~ 135 (458)
..+|.||.+.+. ..+.|.|+. ++|.+||++..++..++ ++|+||+||+|+|.+|+++||++||+||||+|+.+
T Consensus 2 ~~pa~FG~~~~~~~~~~g~l~~-~~p~~gC~~~~~~~~~~-----gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~ 75 (126)
T cd02126 2 AGPAQFGMDLTGDKAGVGRVVK-AKPYRACSEITNAEEVK-----GKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNE 75 (126)
T ss_pred CCCcccCCcCCCCCCceEEEEe-CCchhcccCCCCccccC-----ceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCC
Confidence 367899998886 478999988 46789999887533444 99999999999999999999999999999999875
Q ss_pred CC------ccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEEE
Q 012674 136 EP------LITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (458)
Q Consensus 136 e~------l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (458)
++ ++.|.... .....++||+++|++.+|+.|+++++++..|++.+
T Consensus 76 ~~~~~~~~~~~m~~~~------~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 76 GSSSDTAPMFAMSGDG------DSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred CccccccceeEeecCC------CCCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 42 34553211 01235899999999999999999999998888754
No 4
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.87 E-value=9.3e-22 Score=176.95 Aligned_cols=118 Identities=23% Similarity=0.371 Sum_probs=96.1
Q ss_pred ccccccCCCCCCCceEEEEEe--cCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCC
Q 012674 57 SAIGNFGIPDYGGFMVGSVIY--PDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSV 134 (458)
Q Consensus 57 ~~~A~FG~~~yg~~l~G~lv~--~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~ 134 (458)
..+|+||.+.++..+.|.|+. ++.+.+||+++++... .....++||||+||+|+|.+|++|||++||++|||||+.
T Consensus 17 ~~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~~~--~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~ 94 (138)
T cd02122 17 TESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRFPI--PPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNP 94 (138)
T ss_pred ccccccCCCCCCCccEEEEecCCCCCCcCCCCCCccccC--CccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECC
Confidence 358999999999999999764 5567899999874100 112349999999999999999999999999999999998
Q ss_pred C--CCccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEEE
Q 012674 135 D--EPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (458)
Q Consensus 135 ~--e~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (458)
+ +.++.|..++ ...||+++|++++|+.|++++++|.+|++++
T Consensus 95 ~~~~~~~~m~~~~----------~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 95 GTGNETVKMSHPG----------TGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred CCCCceeeccCCC----------CCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 5 2356664321 2479999999999999999999999888763
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.87 E-value=1.4e-21 Score=171.30 Aligned_cols=114 Identities=19% Similarity=0.324 Sum_probs=93.0
Q ss_pred ccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC---C
Q 012674 61 NFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDE---P 137 (458)
Q Consensus 61 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e---~ 137 (458)
.||.+..+..+.|.|+. ++|.+||++..+.++++ ++|+||+||+|+|.+|++|||++||+||||||+..+ .
T Consensus 1 ~~~~~~~~~~~~~~lv~-~~p~~gC~~~~~~~~~~-----g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~ 74 (118)
T cd02127 1 DFGTIFNTRYKHVPLVP-ADPLEACEELRNIHDIN-----GNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEY 74 (118)
T ss_pred CCCccccccccceEEEE-CCccccCCCCCCccccC-----CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccc
Confidence 48888888888888866 56889999876433444 999999999999999999999999999999998754 2
Q ss_pred ccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEEEe
Q 012674 138 LITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLD 187 (458)
Q Consensus 138 l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l~ 187 (458)
.+.|... +...+++||+++|++++|+.|++.+++|.+|++.+.
T Consensus 75 ~~~m~~~-------~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 75 YVEMIQD-------DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred ceEecCC-------CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEeee
Confidence 3456421 123468999999999999999999999998876653
No 6
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.86 E-value=7.6e-21 Score=171.22 Aligned_cols=121 Identities=23% Similarity=0.382 Sum_probs=98.4
Q ss_pred ceeeeccccccCCCCCC---CceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEE
Q 012674 52 RSKHDSAIGNFGIPDYG---GFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAV 128 (458)
Q Consensus 52 ~~~~~~~~A~FG~~~yg---~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aV 128 (458)
..+|...+|.||..++. +.+.+.++. +++.+||+++++ +++ ++||||+||+|+|.+|++|||++||++|
T Consensus 16 ~~~~~~~~a~FG~~~p~~~~~~~~~~lv~-~~~~~gC~~~~~--~~~-----g~IvLV~RG~C~F~~K~~nA~~aGA~av 87 (139)
T cd02132 16 GDELVGVTARFGASLPSKEDNANKTRAVL-ANPLDCCSPSTS--KLS-----GSIALVERGECAFTEKAKIAEAGGASAL 87 (139)
T ss_pred ccEEEeeccccCCCCCCcccCccEEEEEE-CCcccccCCCCc--ccC-----CeEEEEECCCCCHHHHHHHHHHcCCcEE
Confidence 45799999999987764 467888777 467899999863 444 9999999999999999999999999999
Q ss_pred EEEeCCCCCccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEEE
Q 012674 129 LVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (458)
Q Consensus 129 II~dn~~e~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (458)
||||+.++ +..|...++ +...+++||+++|++++|+.|+++|++|..|++++
T Consensus 88 Iv~n~~~~-~~~~~~~~~-----~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 88 LIINDQEE-LYKMVCEDN-----DTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred EEEECCCc-ccccccCCC-----CCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 99998754 455643221 12235899999999999999999999999888763
No 7
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.80 E-value=2.6e-19 Score=156.77 Aligned_cols=106 Identities=29% Similarity=0.322 Sum_probs=83.9
Q ss_pred ccccccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC
Q 012674 57 SAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDE 136 (458)
Q Consensus 57 ~~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e 136 (458)
...|.||++ +...+++.. ..+|.+||++++ ..+++ ++||||+||+|+|.+|++|||++||++|||||+.++
T Consensus 5 ~~~~~~~~~-~~~~~~~~~--~~~p~~gC~~~~-~~~l~-----gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~ 75 (117)
T cd04813 5 GRYASFSPI-LNPHLRGSY--KVSPTDACSLQE-HAEID-----GKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPG 75 (117)
T ss_pred ccccccCCc-cCccccccc--cCCCCCCCCCCC-cCCcC-----CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCc
Confidence 456789954 455677763 367899999885 23444 999999999999999999999999999999998764
Q ss_pred -CccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHc
Q 012674 137 -PLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (458)
Q Consensus 137 -~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~ 178 (458)
.+++|..++ ...+++||+++|++++|+.|+..+.+
T Consensus 76 ~~~~~m~~~~-------~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 76 RGLITMFSNG-------DTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred ccceecccCC-------CCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 455665332 13468999999999999999988754
No 8
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.77 E-value=6.1e-18 Score=148.77 Aligned_cols=114 Identities=23% Similarity=0.335 Sum_probs=88.6
Q ss_pred ccCCCCCCCceEEEEEecCC-CCCCCCCCCC-CCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCc
Q 012674 61 NFGIPDYGGFMVGSVIYPDK-GASGCQPFEG-DKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL 138 (458)
Q Consensus 61 ~FG~~~yg~~l~G~lv~~~~-~~~gC~~~~~-~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l 138 (458)
.|++..+.+.++|.||+... ..+||++.+. ..++ +++||||+||+|+|.+|++|||++||+++||+|+.++..
T Consensus 7 ~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~~~~-----~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~ 81 (122)
T cd04816 7 SYSPSTPPGGVTAPLVPLDPERPAGCDASDYDGLDV-----KGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGG 81 (122)
T ss_pred eccCCCCCCCcEEEEEEcCCCCccCCCccccCCCCc-----CCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcc
Confidence 47766667899999999643 3599998753 2234 499999999999999999999999999999999876433
Q ss_pred cccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEEE
Q 012674 139 ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (458)
Q Consensus 139 ~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (458)
..+.. .+ . ....+||+++|++++|+.|++++++|.+|++++
T Consensus 82 ~~~~~-~~-----~-~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 82 TAGTL-GA-----P-NIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred ccccc-cC-----C-CCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 22111 10 0 134689999999999999999999998887753
No 9
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.76 E-value=4.6e-18 Score=149.23 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCccccCCCCCCcccCCCcccc
Q 012674 79 DKGASGCQPFEGD-KPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKI 157 (458)
Q Consensus 79 ~~~~~gC~~~~~~-~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l~tM~~~~d~~~~~~~~~~i 157 (458)
.+|..||++.++. .+++ ++|+||+||+|+|.+|++|||++||+|||||||.+.. .+. +. .+...++
T Consensus 27 ~~~~~gC~~~~~~~~~l~-----gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~--~~~--~~----~~~~~~v 93 (120)
T cd02129 27 LTSSVLCSASDVPPGGLK-----GKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLV--PPS--GN----RSEYEKI 93 (120)
T ss_pred CCCcCCCCccccCccccC-----CeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCC--CCC--CC----CCCCcCC
Confidence 5688999987642 2444 9999999999999999999999999999999987532 111 10 1112468
Q ss_pred CceEEEEeHHHHHHHHHHHHcCCeE
Q 012674 158 GIPSALIDRAFGLSLKEALKKGEEV 182 (458)
Q Consensus 158 ~IPsv~Is~~dG~~L~~~l~~g~~V 182 (458)
+||++||++++|+.|++.+.++-+|
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~~~~v 118 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGDSVKV 118 (120)
T ss_pred cccEEEEeHHHHHHHHHHhccCcEE
Confidence 9999999999999999999865333
No 10
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.75 E-value=1.5e-17 Score=146.23 Aligned_cols=114 Identities=25% Similarity=0.303 Sum_probs=86.6
Q ss_pred eeccccccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCC
Q 012674 55 HDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSV 134 (458)
Q Consensus 55 ~~~~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~ 134 (458)
|.... |+..++ +.++|+|++. +.+||.+.+++.+++ ++||||+||+|+|.+|++||+++||++|||||+.
T Consensus 9 ~~~~~--~~~~~~-~~~~g~lv~~--~~~gC~~~~~~~~~~-----gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~ 78 (122)
T cd02130 9 IPTTA--FTYSPA-GEVTGPLVVV--PNLGCDAADYPASVA-----GNIALIERGECPFGDKSALAGAAGAAAAIIYNNV 78 (122)
T ss_pred Eeeee--cccCCC-CCcEEEEEEe--CCCCCCcccCCcCCC-----CEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECC
Confidence 44444 555555 4668999995 468999876433344 9999999999999999999999999999999987
Q ss_pred CCCccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEEE
Q 012674 135 DEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (458)
Q Consensus 135 ~e~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (458)
.+.......+ ...+..||+++|++++|+.|++.+++|.+|+++|
T Consensus 79 ~~~~~~~~~~--------~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 79 PAGGLSGTLG--------EPSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred CCcccccccC--------CCCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 3221111111 1124689999999999999999999999888764
No 11
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.74 E-value=3.6e-17 Score=142.77 Aligned_cols=113 Identities=35% Similarity=0.553 Sum_probs=91.6
Q ss_pred ccccCCCCCC---CceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q 012674 59 IGNFGIPDYG---GFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVD 135 (458)
Q Consensus 59 ~A~FG~~~yg---~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~ 135 (458)
+|.||..... ..+.|.++. +++.++|++.....++ +++|||++||+|+|.+|+++|+++||+++||+|+.+
T Consensus 2 ~a~fg~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~~v-----~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~ 75 (118)
T cd04818 2 SAGFGPALTNVTADVVLAGAAP-ASNTDGCTAFTNAAAF-----AGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVA 75 (118)
T ss_pred CcccCCcCccccccceeEEEec-CCcccccCCCCcCCCC-----CCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCC
Confidence 6889976653 558888877 5788999988642334 499999999999999999999999999999999876
Q ss_pred CC-ccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEEE
Q 012674 136 EP-LITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (458)
Q Consensus 136 e~-l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (458)
++ .+.|..+. ....||+++|++++|+.|++++++|.+|++++
T Consensus 76 ~~~~~~~~~~~---------~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 76 GGAPITMGGDD---------PDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred CCcceeccCCC---------CCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 43 34564221 24679999999999999999999998888764
No 12
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.71 E-value=5.9e-18 Score=151.88 Aligned_cols=127 Identities=23% Similarity=0.376 Sum_probs=104.5
Q ss_pred eEEEEcCCccceeeeccccc-cCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHH
Q 012674 42 SIRVLHPQSLRSKHDSAIGN-FGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHG 120 (458)
Q Consensus 42 ~l~V~~P~~l~~~~~~~~A~-FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nA 120 (458)
.|+|++|.+|+++|+..+|. ||...+ .++.+.-.++++|..||+.+.+..... +.|+|++||+|+|..|.+++
T Consensus 34 ~F~vlsP~~l~Yty~~~pAkdfG~~F~-~r~e~~~lV~adPp~aC~elrN~~f~~-----d~vaL~eRGeCSFl~Ktl~~ 107 (193)
T KOG3920|consen 34 LFTVLSPYTLAYTYQMKPAKDFGVHFP-DRFENLELVLADPPHACEELRNEIFAP-----DSVALMERGECSFLVKTLNG 107 (193)
T ss_pred EEEecCcccEEEEEEecchhhhccccc-hhhcCcceeecCChhHHHHHhhcccCC-----CcEEEEecCCceeeehhhhh
Confidence 58999999999999999998 998776 467776566689999999987543333 78999999999999999999
Q ss_pred HHcCCcEEEEEeCCCCC-----ccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCe
Q 012674 121 QQAGAAAVLVADSVDEP-----LITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEE 181 (458)
Q Consensus 121 Q~aGA~aVII~dn~~e~-----l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~ 181 (458)
|+|||.|+||.|+.... .+.|- ++ ++.++.+||++++-..+|-.++..|++-..
T Consensus 108 e~aGa~aiiitd~~~~~~sf~~YveMI-~D------~sq~~AniPa~fllg~~Gy~ir~sL~r~~r 166 (193)
T KOG3920|consen 108 EKAGATAIIITDSQNYEYSFHQYVEMI-PD------ESQDRANIPAVFLLGVTGYYIRVSLKRYFR 166 (193)
T ss_pred hhcCceEEEEecCCCCchhHHHHHHhc-Cc------ccccccCCceEEEeccceEEEehhHHHhCC
Confidence 99999999999876432 35664 22 334678899999999999999999987543
No 13
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2e-15 Score=152.86 Aligned_cols=116 Identities=23% Similarity=0.289 Sum_probs=95.7
Q ss_pred eeeccccccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeC
Q 012674 54 KHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADS 133 (458)
Q Consensus 54 ~~~~~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn 133 (458)
.|...+|+||+......+.|.++. ++|.+||++....+. .+.....+++||.||+|+|.+|+++||++|++|+|||||
T Consensus 35 sf~d~~a~f~~s~~~e~~~G~l~~-~ep~~aC~~i~~~p~-~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn 112 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSEGNLGVLVV-AEPLNACNPITNFPE-HSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNN 112 (348)
T ss_pred cccCCccccCCccccccceeeeec-CCCccccCccccCcc-CCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecC
Confidence 889999999999998999999866 678899999874222 234556899999999999999999999999999999998
Q ss_pred CCCC-ccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCC
Q 012674 134 VDEP-LITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGE 180 (458)
Q Consensus 134 ~~e~-l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~ 180 (458)
.+.+ ++.|... ..++.||++||+...|+.|+++.....
T Consensus 113 ~~~~~lv~~~~~---------~~~v~i~~~~vs~~~ge~l~~~~~~~~ 151 (348)
T KOG4628|consen 113 VGSEDLVAMASN---------PSKVDIHIVFVSVFSGELLSSYAGRTE 151 (348)
T ss_pred CCCchheeeccC---------CccceeEEEEEeeehHHHHHHhhcccc
Confidence 7644 5666321 246899999999999999999765543
No 14
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.63 E-value=3.6e-15 Score=134.23 Aligned_cols=104 Identities=27% Similarity=0.259 Sum_probs=75.4
Q ss_pred cCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCC-----HHHHHHHHHHcCCcEEEEEeCCC-
Q 012674 62 FGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECY-----FALKVWHGQQAGAAAVLVADSVD- 135 (458)
Q Consensus 62 FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~Cs-----F~~Kv~nAQ~aGA~aVII~dn~~- 135 (458)
|-.....+.++|.|++.. ..+|+ +. ..+++ |+|+||+||+|+ |.+|++|||++||+|||||||.+
T Consensus 27 ~~s~~~~g~~tg~lv~~g--~~g~d-~~-~~d~~-----GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~ 97 (139)
T cd04817 27 YASMPVTGSATGSLYYCG--TSGGS-YI-CGGMA-----GKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAAL 97 (139)
T ss_pred ccccccCCcceEEEEEcc--CCCcc-cc-CCCcC-----ccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCC
Confidence 433344568899998854 34463 21 12344 999999999999 99999999999999999999973
Q ss_pred -CCccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeE
Q 012674 136 -EPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEV 182 (458)
Q Consensus 136 -e~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V 182 (458)
+.+..+- .++ ..+++||+++|++++|+.|++.|.++.+|
T Consensus 98 ~g~~~~~l-g~~-------~~~~~IP~v~is~~dG~~L~~~l~~~~tv 137 (139)
T cd04817 98 AGLQNPFL-VDT-------NNDTTIPSVSVDRADGQALLAALGQSTTV 137 (139)
T ss_pred CCcccccc-cCC-------CCCceEeEEEeeHHHHHHHHHHhcCCCee
Confidence 3222221 111 12579999999999999999999665433
No 15
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.63 E-value=3.5e-15 Score=132.93 Aligned_cols=92 Identities=25% Similarity=0.359 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCccccCCCCCCcccCCCccccC
Q 012674 79 DKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIG 158 (458)
Q Consensus 79 ~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l~tM~~~~d~~~~~~~~~~i~ 158 (458)
+.+.+||+++... +. ..+++||||+||+|+|.+|++|||++||++|||||+.++++ .+... ....
T Consensus 38 ~~~~~gC~~~~~~--~~--~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~-~~~~~----------~~~~ 102 (129)
T cd02124 38 SVADDACQPLPDD--TP--DLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPT-DQVGS----------DADS 102 (129)
T ss_pred CCCcccCcCCCcc--cc--cccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcc-cccCC----------CCcc
Confidence 3577999998522 11 23499999999999999999999999999999999886543 33211 1234
Q ss_pred ceEEEEeHHHHHHHHHHHHcCCeEEEEE
Q 012674 159 IPSALIDRAFGLSLKEALKKGEEVVIKL 186 (458)
Q Consensus 159 IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (458)
||.+++ +++|+.|+++|++|.+|++++
T Consensus 103 ~~~~~~-~~~G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 103 IIAAVT-PEDGEAWIDALAAGSNVTVDF 129 (129)
T ss_pred eeeEEe-HHHHHHHHHHHhcCCeEEEeC
Confidence 666666 999999999999998888764
No 16
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.53 E-value=2e-14 Score=120.78 Aligned_cols=97 Identities=24% Similarity=0.409 Sum_probs=64.5
Q ss_pred CCCceEEEEEecCC--CCCCCCCCC-CCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCccccCC
Q 012674 67 YGGFMVGSVIYPDK--GASGCQPFE-GDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDS 143 (458)
Q Consensus 67 yg~~l~G~lv~~~~--~~~gC~~~~-~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l~tM~~ 143 (458)
|++..+|.||.+.. ....|.+.+ ....+ +++|||++||.|+|.+|++|||++||+||||+|..... ..+.
T Consensus 2 ~~~~~~~~lV~~~~~~~~~~~~~~~~~~~~~-----~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~-~~~~- 74 (101)
T PF02225_consen 2 PSGTVTGPLVPAGNGIDEGDCCPSDYNGSDV-----KGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNN-GSMI- 74 (101)
T ss_dssp --EEEEEEEEEETTEEECCHHHHHHTSTSTC-----TTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSC-TTTT-
T ss_pred CCCCEEEEEEEecCCCCcccccccccCCccc-----cceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccc-cCcc-
Confidence 45678889883221 123333322 22233 49999999999999999999999999999999922111 1111
Q ss_pred CCCCcccCCCccccCceEEEEeHHHHHHHHHHH
Q 012674 144 PEESTDANGYVEKIGIPSALIDRAFGLSLKEAL 176 (458)
Q Consensus 144 ~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l 176 (458)
. ......+.||+++|++++|+.|++++
T Consensus 75 -~-----~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 75 -D-----SEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp -C-----EBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred -c-----ccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 1 01124688999999999999999875
No 17
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.50 E-value=1.4e-13 Score=119.84 Aligned_cols=99 Identities=29% Similarity=0.338 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCccccCCCCCCcccCCCccccCc
Q 012674 80 KGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGI 159 (458)
Q Consensus 80 ~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l~tM~~~~d~~~~~~~~~~i~I 159 (458)
.+..+|.+... ++.....+++|||++||+|+|.+|+++||++||+|+||+++.+.....|....+ ......|
T Consensus 28 ~~~~~C~~~~~--~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~------~~~~~~i 99 (126)
T cd00538 28 GPLVGCGYGTT--DDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGL------ESTDPSI 99 (126)
T ss_pred cceEEEecCcc--cccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccC------CCCCCcE
Confidence 35677887641 222233459999999999999999999999999999999987643333322111 0134679
Q ss_pred eEEEEeHHHHHHHHHHHHcCCeEEEEE
Q 012674 160 PSALIDRAFGLSLKEALKKGEEVVIKL 186 (458)
Q Consensus 160 Psv~Is~~dG~~L~~~l~~g~~V~v~l 186 (458)
|+++|++++|+.|++++++|.+|++++
T Consensus 100 P~~~is~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 100 PTVGISYADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred eEEEeCHHHHHHHHHHHhcCCceEEeC
Confidence 999999999999999999988877653
No 18
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.42 E-value=3.4e-12 Score=115.24 Aligned_cols=107 Identities=25% Similarity=0.286 Sum_probs=78.8
Q ss_pred cccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCcc
Q 012674 60 GNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLI 139 (458)
Q Consensus 60 A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l~ 139 (458)
..++.+...+...+.||+.. . |.+.+ +.....+++|||++||+|+|.+|+++|+++||++|||+|+.... .
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g---~-g~~~d----~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~-~ 85 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAG---L-GTPED----FEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL-I 85 (143)
T ss_pred ccCCCcCCCCCcEEEEEEcc---C-Cchhc----cCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc-c
Confidence 45777666678999999953 2 23222 22223459999999999999999999999999999999987543 2
Q ss_pred ccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEEEe
Q 012674 140 TMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLD 187 (458)
Q Consensus 140 tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l~ 187 (458)
.|. .+ ....||+++|++++|+.|++++++ .+++++.
T Consensus 86 ~~~--~~--------~~~~iP~v~Is~~dG~~L~~~l~~--~~~i~~~ 121 (143)
T cd02133 86 PGT--LG--------EAVFIPVVFISKEDGEALKAALES--SKKLTFN 121 (143)
T ss_pred ccc--CC--------CCCeEeEEEecHHHHHHHHHHHhC--CCeEEEE
Confidence 221 10 135699999999999999999987 3444443
No 19
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.38 E-value=8.8e-12 Score=110.60 Aligned_cols=105 Identities=21% Similarity=0.226 Sum_probs=76.9
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCC--CHHHHHHHHHHcCCcEEEEEeCCCCCccccCCCC
Q 012674 68 GGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGEC--YFALKVWHGQQAGAAAVLVADSVDEPLITMDSPE 145 (458)
Q Consensus 68 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~C--sF~~Kv~nAQ~aGA~aVII~dn~~e~l~tM~~~~ 145 (458)
.+.++|.+|+.. .| .+.+ |...+.+|+||||+||.| +|..|+++|+++||+||||+|+.+..+..+....
T Consensus 20 ~~~~~~~lV~~g---~G-~~~d----~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~ 91 (127)
T cd04819 20 SGEAKGEPVDAG---YG-LPKD----FDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEG 91 (127)
T ss_pred CCCeeEEEEEeC---CC-CHHH----cCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccc
Confidence 356899999963 33 2222 222234599999999999 9999999999999999999987765432221111
Q ss_pred CCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEE
Q 012674 146 ESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIK 185 (458)
Q Consensus 146 d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~ 185 (458)
........||++.|+.+||+.|++++++|+.|.++
T Consensus 92 -----~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 92 -----TEDGPPSPIPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred -----ccCCCCCCCCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 11123467999999999999999999998877654
No 20
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.38 E-value=2e-12 Score=134.02 Aligned_cols=122 Identities=21% Similarity=0.309 Sum_probs=92.0
Q ss_pred eeccccccCCCCCCCceEEEEEe--cCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEe
Q 012674 55 HDSAIGNFGIPDYGGFMVGSVIY--PDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVAD 132 (458)
Q Consensus 55 ~~~~~A~FG~~~yg~~l~G~lv~--~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d 132 (458)
+....+.||..+....-...+.+ -..|.|-|++.. .+++ +++++|.||+|+|.+|+++||++||.|++|.|
T Consensus 55 ~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~--~kl~-----~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin 127 (541)
T KOG2442|consen 55 FAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQ--SKLS-----GKVALVFRGNCSFTEKAKLAQAAGASALLIIN 127 (541)
T ss_pred hhhhhhhcCCcCCCCccccccchhhhcCCccccCCCC--cccc-----ceeEEEecccceeehhhhhhhhcCceEEEEEc
Confidence 45667778876654222222211 135788888765 2344 89999999999999999999999999999999
Q ss_pred CCCCCccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEEEeec
Q 012674 133 SVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDWT 189 (458)
Q Consensus 133 n~~e~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l~~~ 189 (458)
|..|- .-|...+. ....+++||++||++++|+.|.+....+.+|++.++-+
T Consensus 128 ~~~d~-~~~~~~~~-----~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaP 178 (541)
T KOG2442|consen 128 NKKDL-LFMPCGNK-----ETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAP 178 (541)
T ss_pred Cchhh-ccCCCCCC-----CccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECC
Confidence 87543 34543221 22457999999999999999999999999999999974
No 21
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.29 E-value=8.9e-12 Score=111.69 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=79.2
Q ss_pred cCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCC------CHHHH-------HHHHHHcCCcEE
Q 012674 62 FGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGEC------YFALK-------VWHGQQAGAAAV 128 (458)
Q Consensus 62 FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~C------sF~~K-------v~nAQ~aGA~aV 128 (458)
|.+...++.++|+||+..+ .+ .+. .+.....+|+||||+||.| +|..| +.+|+++||.|+
T Consensus 8 ~s~~t~~~gvta~vv~v~~--~~--~~~---~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~av 80 (134)
T cd04815 8 GSVATPPEGITAEVVVVKS--FD--ELK---AAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAV 80 (134)
T ss_pred CCCCCCCCCcEEEEEEECC--HH--HHH---hcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEE
Confidence 4444455679999998752 12 222 1211123499999999999 99999 699999999999
Q ss_pred EEEeCCCCC---c--cccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEEE
Q 012674 129 LVADSVDEP---L--ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (458)
Q Consensus 129 II~dn~~e~---l--~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (458)
||+|+.+.. . -+|..+ .....||++.|+.+||+.|.+.+++|+.|+++|
T Consensus 81 Iv~s~~~~~~~~~~~G~~~~~---------~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 81 LIRSIGTDSHRSPHTGMMSYD---------DGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred EEEecCcccCCCCcCCccccC---------CCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 999975332 1 122221 123679999999999999999999999888764
No 22
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.05 E-value=1e-09 Score=96.26 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=65.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEEecCCC-CHHHHHHHHHHcCCcEEEEEeCCCCCccccCCCCCCcccCCCccccCc
Q 012674 81 GASGCQPFEGDKPFKSKFPRPTVLLLDRGEC-YFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGI 159 (458)
Q Consensus 81 ~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~C-sF~~Kv~nAQ~aGA~aVII~dn~~e~l~tM~~~~d~~~~~~~~~~i~I 159 (458)
...+|++.... ....+|+|||++||.| +|.+|+.+|+++||.|+|++++..+.. .+. .....|
T Consensus 36 ~~~~C~~~~~~----~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~-~~~-----------~~~~~i 99 (126)
T cd02120 36 DASLCLPGSLD----PSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL-DVV-----------ADAHVL 99 (126)
T ss_pred ccccCCCCCCC----hhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc-eec-----------cccccc
Confidence 34689876422 1223499999999999 999999999999999999998865532 111 013579
Q ss_pred eEEEEeHHHHHHHHHHHHcCC
Q 012674 160 PSALIDRAFGLSLKEALKKGE 180 (458)
Q Consensus 160 Psv~Is~~dG~~L~~~l~~g~ 180 (458)
|+++|++++|+.|+++++++.
T Consensus 100 P~v~I~~~~g~~l~~y~~~~~ 120 (126)
T cd02120 100 PAVHVDYEDGTAILSYINSTS 120 (126)
T ss_pred ceEEECHHHHHHHHHHHHcCC
Confidence 999999999999999999764
No 23
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=99.03 E-value=1.9e-09 Score=101.31 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=74.8
Q ss_pred cccccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCC--CCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q 012674 58 AIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFK--SKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVD 135 (458)
Q Consensus 58 ~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~--~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~ 135 (458)
....|-.-...+.++|.|||+ ..| .+.++. .+. ..+.+++||||+||.|+|.+|+++||++||+|||||+|..
T Consensus 16 ~~~~f~~~s~~G~v~g~lVyv---n~G-~~~Df~-~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~ 90 (183)
T cd02128 16 NPGGYVAYSAAGTVTGKLVYA---NYG-RKKDFE-DLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPA 90 (183)
T ss_pred ccccccCCCCCCceEEEEEEc---CCC-CHHHHH-HHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHH
Confidence 333454444457889999996 244 332221 000 1234599999999999999999999999999999998742
Q ss_pred CC-------------------ccccCCCCCCcc---cCCCccccCceEEEEeHHHHHHHHHHHHc
Q 012674 136 EP-------------------LITMDSPEESTD---ANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (458)
Q Consensus 136 e~-------------------l~tM~~~~d~~~---~~~~~~~i~IPsv~Is~~dG~~L~~~l~~ 178 (458)
+. ..|++.|..+.. .++...-..||++-||.+++..|++.|.-
T Consensus 91 d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 91 DFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred HcCcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 11 112222111000 00111235799999999999999999953
No 24
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.51 E-value=6.4e-07 Score=86.80 Aligned_cols=123 Identities=22% Similarity=0.265 Sum_probs=79.5
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCCC--CCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCC---------
Q 012674 69 GFMVGSVIYPDKGASGCQPFEGDKPFK--SKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEP--------- 137 (458)
Q Consensus 69 ~~l~G~lv~~~~~~~gC~~~~~~~~~~--~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~--------- 137 (458)
+.++|.|||+ ..|...++. .+. ..+.+|+|||+++|.|.+..|+++|+++||+|||||++..+.
T Consensus 43 g~v~g~lVyv----nyG~~~D~~-~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~ 117 (220)
T cd02121 43 GNVTAELVYA----NYGSPEDFE-YLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGK 117 (220)
T ss_pred CCceEEEEEc----CCCcHHHHH-HHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccc
Confidence 5689999996 345443321 111 223459999999999999999999999999999999874211
Q ss_pred -----------cccc-------CCCCCC-cc------c------CCCccccCceEEEEeHHHHHHHHHHHHcCCeEEEEE
Q 012674 138 -----------LITM-------DSPEES-TD------A------NGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (458)
Q Consensus 138 -----------l~tM-------~~~~d~-~~------~------~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (458)
-+.. ..++|- ++ . .....-.+||+.=||..|++.|++.|.... +--
T Consensus 118 ~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~---~p~ 194 (220)
T cd02121 118 TYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG---APS 194 (220)
T ss_pred cCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC---CCc
Confidence 0000 011110 00 0 011123579999999999999999997432 444
Q ss_pred eeccCCCCCCCceeEEEE
Q 012674 187 DWTESMPHPDQRVEYELW 204 (458)
Q Consensus 187 ~~~~~~p~pd~~Ve~~~w 204 (458)
+|...++ +.|.+|
T Consensus 195 ~W~g~l~-----~~y~~g 207 (220)
T cd02121 195 DWQGGLP-----VTYRLG 207 (220)
T ss_pred cccCCCC-----CceeeC
Confidence 6755442 566665
No 25
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.34 E-value=6.1e-06 Score=75.59 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=68.1
Q ss_pred cCCCCCCCceEEEEEecCC--CCCCCCCCCCCCCCCCCCCCCeEEEEecCC------------------CCHHHHHHHHH
Q 012674 62 FGIPDYGGFMVGSVIYPDK--GASGCQPFEGDKPFKSKFPRPTVLLLDRGE------------------CYFALKVWHGQ 121 (458)
Q Consensus 62 FG~~~yg~~l~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~------------------CsF~~Kv~nAQ 121 (458)
|+.... +.++|.||++.. ...+|...+ |...+.+|+||||.||. |+|..|+.+|+
T Consensus 12 ~~~s~s-g~vtg~lVfvGyGi~~~~~~~~D----y~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~ 86 (151)
T cd04822 12 FAFSRS-GAVTAPVVFAGYGITAPELGYDD----YAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNAR 86 (151)
T ss_pred eccCCC-CCceEeEEEecCCcCccccchhh----ccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHH
Confidence 443333 679999999753 245665444 22233459999999985 99999999999
Q ss_pred HcCCcEEEEEeCCCCCccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHc
Q 012674 122 QAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (458)
Q Consensus 122 ~aGA~aVII~dn~~e~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~ 178 (458)
++||+|||||++..+..-. .+..+..+ .. .++.|+.+..+.+..++..
T Consensus 87 ~~GA~aVIv~~d~~~~~~~----~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~ 134 (151)
T cd04822 87 RHGAAAVIVVNGPNSHSGD----ADRLPRFG----GT-APQRVDIAAADPWFTAAEA 134 (151)
T ss_pred HCCCeEEEEEeCCcccCcc----cccccccC----cc-ceEEechHHHHHHhhhhhh
Confidence 9999999999986443210 01000001 11 1788888888888886443
No 26
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.31 E-value=1.6e-06 Score=78.97 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=67.2
Q ss_pred CCceEEEEEecCCCCCCCC-CCCCCCCCC-CCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCC--------
Q 012674 68 GGFMVGSVIYPDKGASGCQ-PFEGDKPFK-SKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEP-------- 137 (458)
Q Consensus 68 g~~l~G~lv~~~~~~~gC~-~~~~~~~~~-~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~-------- 137 (458)
.++++|++||+- .|=. .|. .+. .-+.+|+|||++.|.-++..|++|||++||.|||||.|..+.
T Consensus 12 sG~Vtg~~VYvN---yG~~eDf~---~L~~~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~ 85 (153)
T cd02131 12 KGTLQAEVVDVQ---YGSVEDLR---RIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWH 85 (153)
T ss_pred CCceEEEEEEec---CCCHHHHH---HHHhCCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCcc
Confidence 478999999962 2221 111 000 122449999999999999999999999999999999875221
Q ss_pred -cc--ccCCCCC-Ccc------c---CCCccccCceEEEEeHHHHHHHHHHHH
Q 012674 138 -LI--TMDSPEE-STD------A---NGYVEKIGIPSALIDRAFGLSLKEALK 177 (458)
Q Consensus 138 -l~--tM~~~~d-~~~------~---~~~~~~i~IPsv~Is~~dG~~L~~~l~ 177 (458)
.. ..+.++| .++ + .....-.+||+.=||..|+..|+++-.
T Consensus 86 ~v~~v~~~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 86 QAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred ceEEEecCCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCc
Confidence 00 1110111 000 0 011123679999999999999987643
No 27
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.26 E-value=3.4e-06 Score=76.52 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=53.9
Q ss_pred ccccccCCCCCCCceEEEEEecCCC--CCCCCCCCCCCCCCCCCCCCeEEEEecCCC------------------CHHHH
Q 012674 57 SAIGNFGIPDYGGFMVGSVIYPDKG--ASGCQPFEGDKPFKSKFPRPTVLLLDRGEC------------------YFALK 116 (458)
Q Consensus 57 ~~~A~FG~~~yg~~l~G~lv~~~~~--~~gC~~~~~~~~~~~~~~~~~IvLV~RG~C------------------sF~~K 116 (458)
..+.+|+.+ +.++|+||++... ..+|.-.+ |...+.+|+||||.||.| +|..|
T Consensus 9 ~~~~~~~~~---~~~~aelVfvGyGi~a~~~~~dD----Yag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K 81 (142)
T cd04814 9 AAMLNVDAV---AIKDAPLVFVGYGIKAPELSWDD----YAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYK 81 (142)
T ss_pred ccccCCCCc---cccceeeEEecCCcCCCCCChhh----cCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHH
Confidence 355556632 5678999997532 34565443 333345599999999999 79999
Q ss_pred HHHHHHcCCcEEEEEeCCC
Q 012674 117 VWHGQQAGAAAVLVADSVD 135 (458)
Q Consensus 117 v~nAQ~aGA~aVII~dn~~ 135 (458)
+.+|+++||+||||+++.+
T Consensus 82 ~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 82 YEEAARHGAAGVLIVHELA 100 (142)
T ss_pred HHHHHHCCCcEEEEEeCCC
Confidence 9999999999999999864
No 28
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.08 E-value=1.5e-05 Score=71.84 Aligned_cols=64 Identities=9% Similarity=0.055 Sum_probs=49.6
Q ss_pred CCceEEEEEecCC--CCCCCCCCCCCCCCCCCCCCCeEEEEecCCCC------------HHHHHHHHHHcCCcEEEEEeC
Q 012674 68 GGFMVGSVIYPDK--GASGCQPFEGDKPFKSKFPRPTVLLLDRGECY------------FALKVWHGQQAGAAAVLVADS 133 (458)
Q Consensus 68 g~~l~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~Cs------------F~~Kv~nAQ~aGA~aVII~dn 133 (458)
.+.++|.||++.. ...+|...+ |...+.+|+||||.||.|. +..|+++|+++||+||||+++
T Consensus 19 ~g~v~gelVfvGyG~~~~~~~~~D----y~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 19 AASVEAPLVFVGYGLVAPELGHDD----YAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred CCCceEeEEEecCCcCccCcCHhh----ccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 3678999999752 245666444 2223345999999999994 889999999999999999987
Q ss_pred CC
Q 012674 134 VD 135 (458)
Q Consensus 134 ~~ 135 (458)
..
T Consensus 95 ~~ 96 (137)
T cd04820 95 PR 96 (137)
T ss_pred Cc
Confidence 53
No 29
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.11 E-value=0.02 Score=50.45 Aligned_cols=86 Identities=19% Similarity=0.324 Sum_probs=58.6
Q ss_pred hhhhHHHHHHhhcCcchhhhhHHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEc
Q 012674 309 VWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIN 388 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~~~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN 388 (458)
++|+|....-.. . ...+.+=-.++++++|+|.+++++|+.+.. ....++++.+.-.. .+|.-.||++||
T Consensus 68 ~~~~~~~~lf~~---~-~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~gi~gtPt~~v~ 136 (154)
T cd03023 68 KYLEFHNALMAT---R-GRLNEESLLRIAKKAGLDEAKLKKDMDDPE---IEATIDKNRQLARA----LGITGTPAFIIG 136 (154)
T ss_pred HHHHHHHHHHhc---C-CCCCHHHHHHHHHHcCCCHHHHHHHhhChH---HHHHHHHHHHHHHH----cCCCcCCeEEEC
Confidence 688888765331 1 112222144677889999999999998642 33455555443222 347889999999
Q ss_pred CeeeccccChhHHHHHH
Q 012674 389 DVQYRGKLERTAVLRAI 405 (458)
Q Consensus 389 ~~~yrG~L~~~~v~~aI 405 (458)
|+.+.|..+.+.+.++|
T Consensus 137 g~~~~G~~~~~~l~~~i 153 (154)
T cd03023 137 DTVIPGAVPADTLKEAI 153 (154)
T ss_pred CEEecCCCCHHHHHHHh
Confidence 99999999988887765
No 30
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.39 E-value=0.087 Score=47.13 Aligned_cols=152 Identities=14% Similarity=0.220 Sum_probs=88.5
Q ss_pred CCCCceeEEEEeccCCccccchhhhHHHHHHHHHHHHHHhhCCceEEeeeEEEecCccccccccccccccccCCcccCCC
Q 012674 194 HPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPD 273 (458)
Q Consensus 194 ~pd~~Ve~~~w~~s~d~~~~~~d~~~~fi~~f~~~a~~l~~~g~~~Ftphy~~~~c~~~~~~~~~~~~~Ci~~GrYCa~d 273 (458)
.|+.++....+++.. |+ ...+|...+.++.+.+-..|.+.|..|-+
T Consensus 9 ~~~a~~~v~~f~d~~--Cp----~C~~~~~~~~~~~~~~i~~~~v~~~~~~~---------------------------- 54 (162)
T PF13462_consen 9 NPDAPITVTEFFDFQ--CP----HCAKFHEELEKLLKKYIDPGKVKFVFRPV---------------------------- 54 (162)
T ss_dssp -TTTSEEEEEEE-TT--SH----HHHHHHHHHHHHHHHHTTTTTEEEEEEES----------------------------
T ss_pred CCCCCeEEEEEECCC--CH----hHHHHHHHHhhhhhhccCCCceEEEEEEc----------------------------
Confidence 467888988888885 54 34455555555555552246777776622
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhhhhhcccCCcchhhhHHHHHHhhcCcchhhhhHHHHHHHHHHcCCCHHhhccccCC
Q 012674 274 PEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGD 353 (458)
Q Consensus 274 pd~~~~~~~sG~dVV~E~lRQlCi~~~~~~~~~~~~WW~Y~~~F~~~C~~~~~~~~~~Cs~~v~k~l~id~~~i~~C~~d 353 (458)
|- .+..+..-..--.|+.+.. + .||.+...+...-. ... .. .++.++-+.+.+++++|+.+
T Consensus 55 ~~-------~~~~~~~a~~~~~~~~~~~-~-----~~~~~~~~~~~~~~---~~~-~~--~~i~~~~~~~~~~~~~~~~~ 115 (162)
T PF13462_consen 55 PL-------DKHSSLRAAMAAECVADQG-K-----YFWFFHELLFSQQE---NFE-NK--KDIAANAGGSNEQFNKCLNS 115 (162)
T ss_dssp SS-------SHHHHHHHHHHHHHHHHHT-H-----HHHHHHHHHHHHCH---STS-SH--HHHHHHTTSHHHHHHHHHTS
T ss_pred cc-------cchhHHHHHHHHHHHHHHh-H-----HHHHHHHHHHHhhh---ccc-hh--HHHHHHcCCCHHHHHHHhhc
Confidence 10 0111233333455666665 4 68887776554422 111 12 44455556668889999986
Q ss_pred CcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHHHH
Q 012674 354 PEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 354 s~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aI 405 (458)
.. ....+++..+.-.. .+|..-||++|||+.+.|..+.+++.++|
T Consensus 116 ~~---~~~~~~~~~~~~~~----~~i~~tPt~~inG~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 116 DE---IKAQLEADSQLARQ----LGITGTPTFFINGKYVVGPYTIEELKELI 160 (162)
T ss_dssp HH---HHHHHHHHHHHHHH----HT-SSSSEEEETTCEEETTTSHHHHHHHH
T ss_pred hH---HHHHHHHHHHHHHH----cCCccccEEEECCEEeCCCCCHHHHHHHH
Confidence 53 22333333222211 23677899999999999999998887765
No 31
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.14 E-value=0.045 Score=50.64 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=41.2
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCH-------------------HHHHHHHHHcCCcEEEE
Q 012674 70 FMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYF-------------------ALKVWHGQQAGAAAVLV 130 (458)
Q Consensus 70 ~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF-------------------~~Kv~nAQ~aGA~aVII 130 (458)
...+.||++.....+ ..... .+|+..+.+||||||.+|+=.| ..|...|+++||+|||+
T Consensus 21 ~~~~elVFvGyGi~a-pe~~~-dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~ 98 (157)
T cd04821 21 LKDSPLVFVGYGIVA-PEYGW-DDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALI 98 (157)
T ss_pred cccCCEEEeccCccC-cccCc-ccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEE
Confidence 456777775422221 01111 1344455669999999886543 34999999999999999
Q ss_pred EeCC
Q 012674 131 ADSV 134 (458)
Q Consensus 131 ~dn~ 134 (458)
+++.
T Consensus 99 v~~~ 102 (157)
T cd04821 99 VHET 102 (157)
T ss_pred EeCC
Confidence 9764
No 32
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=93.43 E-value=0.32 Score=45.41 Aligned_cols=90 Identities=12% Similarity=0.139 Sum_probs=56.7
Q ss_pred hhhhHHHHHHhhcCcchhhh-hHHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEE
Q 012674 309 VWWDYVTDFHIRCSMKEKRY-SKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~~-~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~I 387 (458)
.+|.|....-..-....... ..+=-.++.+.+|+|.+++.+++.+... ...|+++.+.-.. .+|.-.||++|
T Consensus 109 ~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~---~~~~~~~~~~a~~----~gv~G~Pt~vv 181 (201)
T cd03024 109 KQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEY---ADEVRADEARARQ----LGISGVPFFVF 181 (201)
T ss_pred cHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCccc---chHHHHHHHHHHH----CCCCcCCEEEE
Confidence 46777666433222111111 1345567788899999999999987542 2334433332222 23788999999
Q ss_pred cCe-eeccccChhHHHHHH
Q 012674 388 NDV-QYRGKLERTAVLRAI 405 (458)
Q Consensus 388 N~~-~yrG~L~~~~v~~aI 405 (458)
||+ ...|-.+.+.+.++|
T Consensus 182 ~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 182 NGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred CCeEeecCCCCHHHHHHHh
Confidence 987 468888887777665
No 33
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=93.33 E-value=0.38 Score=54.34 Aligned_cols=220 Identities=15% Similarity=0.086 Sum_probs=119.4
Q ss_pred cCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCc---
Q 012674 62 FGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL--- 138 (458)
Q Consensus 62 FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l--- 138 (458)
|+.-...++..|.+||.- ..+=..+..-... .-...++|+|++=|.=++..|+.||+++||.+||||.+..+-.
T Consensus 149 ~~~~s~~g~~~~~~Vy~N--~~~~~d~~~l~~~-~i~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~d~~~~~ 225 (702)
T KOG2195|consen 149 FRAYSPSGSVTGELVYAN--YGRIEDFYKLEDL-GINLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPYDYGSDE 225 (702)
T ss_pred hhccCcCCCccceEEEEe--cCchhhhhHhhcC-cccccCceEEEEccccchhhhHhhHHHhhcCcEEEeeccccccccc
Confidence 443244567888888852 1111112100000 1123499999999999999999999999999999997642100
Q ss_pred ---------ccc-------------CCCCCC--c-----------c-cCCC-ccccCceEEEEeHHHHHHHHHHHHcCCe
Q 012674 139 ---------ITM-------------DSPEES--T-----------D-ANGY-VEKIGIPSALIDRAFGLSLKEALKKGEE 181 (458)
Q Consensus 139 ---------~tM-------------~~~~d~--~-----------~-~~~~-~~~i~IPsv~Is~~dG~~L~~~l~~g~~ 181 (458)
..| ...++. + + +... +.-..||+.=|+..+.+.|...+..+-.
T Consensus 226 ~~~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~pa~~~~~~~~~~~~~~~~~P~Ip~~Pis~~~ae~l~~~~~g~~~ 305 (702)
T KOG2195|consen 226 VLEVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYPAVDIYSRHSPDAKFSGGLPKIPSLPISAEDAEILLRLLGGGVK 305 (702)
T ss_pred cccccCcccccCCccceecceecccCCCCCCCCCCccCccccccCChhhhhcCCCCCCCCcCccchhHHHHHHHhCCCcc
Confidence 001 000110 0 0 0011 1134899999999777777766654422
Q ss_pred EEEEEeeccCCCCCCCceeEEEEeccCCccccchhhhHHHHHHHHHHHHHHhhCCceEEeeeEEEecCcccccccccccc
Q 012674 182 VVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKS 261 (458)
Q Consensus 182 V~v~l~~~~~~p~pd~~Ve~~~w~~s~d~~~~~~d~~~~fi~~f~~~a~~l~~~g~~~Ftphy~~~~c~~~~~~~~~~~~ 261 (458)
.. + ...+.|.+|....-.+. + .+.+ +...+++.+.+--+-+...+ .+
T Consensus 306 ~~----~-------~~~~~~~~gpg~~~~~~--------~---------~~~~-~~~~~~ki~NIig~I~Gs~e----pD 352 (702)
T KOG2195|consen 306 PD----G-------LLGVSYRVGPGSTGDKD--------L---------VVVQ-NTREETKIQNIIGKIEGSEE----PD 352 (702)
T ss_pred cc----c-------ccCcccccccccccccc--------c---------eecc-ceeeeeeeeeEEEEEecCcC----CC
Confidence 22 2 34566666665543211 1 0111 23445555555544333222 23
Q ss_pred ccccCCcccCCCCCCCCCCCCcchhhHHHHHHHHhhhhhhccc---CCcchhhhHHHHHHh
Q 012674 262 QCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANES---NRSWVWWDYVTDFHI 319 (458)
Q Consensus 262 ~Ci~~GrYCa~dpd~~~~~~~sG~dVV~E~lRQlCi~~~~~~~---~~~~~WW~Y~~~F~~ 319 (458)
+-|-.|.|-++=--| -.+..+|+-+++|+.|++-.++...-- ...|.||+ ..+|+-
T Consensus 353 ~~ViigahrDSw~~G-a~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWd-AeEfGl 411 (702)
T KOG2195|consen 353 RYVIIGAHRDSWTFG-AIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWD-AEEFGL 411 (702)
T ss_pred eEEEEeccccccccC-CcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEcc-chhccc
Confidence 344444432221111 112347899999999999998776531 25578997 455554
No 34
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=91.17 E-value=0.47 Score=43.14 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeecccc
Q 012674 330 KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKL 396 (458)
Q Consensus 330 ~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L 396 (458)
.+=-.++.+++|+|.+++++|+.+.. .+..+++....-.. .+|.--||++|||+.+-+-.
T Consensus 99 ~~~l~~~a~~~Gl~~~~~~~~~~s~~---~~~~i~~~~~~~~~----~gi~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 99 PDDIRKIFLSQGVDKKKFDAAYNSFS---VKALVAKAEKLAKK----YKITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCHH---HHHHHHHHHHHHHH----cCCCCCCeEEECCEEEEChh
Confidence 34467788889999999999997643 33445544332222 34788999999999775543
No 35
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=90.80 E-value=0.46 Score=43.85 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=52.9
Q ss_pred hhhHHHHHHhhcCcchhhhh-HHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEc
Q 012674 310 WWDYVTDFHIRCSMKEKRYS-KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIN 388 (458)
Q Consensus 310 WW~Y~~~F~~~C~~~~~~~~-~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN 388 (458)
.|.++...-..........+ .+=-.++.+++|+|.+++++++.+.. ....|+++.+.-.. .+|.-.||++||
T Consensus 102 ~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~---~~~~l~~~~~~a~~----~gi~gvPtfvv~ 174 (192)
T cd03022 102 AEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADELLAAADDPA---VKAALRANTEEAIA----RGVFGVPTFVVD 174 (192)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHHHHHHcCCHH---HHHHHHHHHHHHHH----cCCCcCCeEEEC
Confidence 56666553332222211211 22245677889999999999998754 22333333332112 348889999999
Q ss_pred CeeeccccChhHHHHH
Q 012674 389 DVQYRGKLERTAVLRA 404 (458)
Q Consensus 389 ~~~yrG~L~~~~v~~a 404 (458)
|+.|.|.-..+-+..+
T Consensus 175 g~~~~G~~~l~~~~~~ 190 (192)
T cd03022 175 GEMFWGQDRLDMLEEA 190 (192)
T ss_pred CeeecccccHHHHHHH
Confidence 9999998665555443
No 36
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=89.41 E-value=0.53 Score=43.36 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=55.7
Q ss_pred hhhhHHHHHHhhcCcchhhhh-HHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEE
Q 012674 309 VWWDYVTDFHIRCSMKEKRYS-KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~~~-~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~I 387 (458)
+++.+...............+ .+=-.++++++|+|.+++++-+.++. ....++++....... +|.-.|+++|
T Consensus 101 ~~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~---~~~~~~~~~~~a~~~----gv~GvP~~vv 173 (193)
T PF01323_consen 101 KADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDSPE---VKAALEEDTAEARQL----GVFGVPTFVV 173 (193)
T ss_dssp HHHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTSHH---HHHHHHHHHHHHHHT----TCSSSSEEEE
T ss_pred hhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcchH---HHHHHHHHHHHHHHc----CCcccCEEEE
Confidence 345555554333332222222 34456788899999999999888743 334555554433333 3778999999
Q ss_pred cCe-eeccccChhHHHHHH
Q 012674 388 NDV-QYRGKLERTAVLRAI 405 (458)
Q Consensus 388 N~~-~yrG~L~~~~v~~aI 405 (458)
||+ .+.|.-..+.+.++|
T Consensus 174 ~g~~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 174 NGKYRFFGADRLDELEDAL 192 (193)
T ss_dssp TTTEEEESCSSHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHh
Confidence 999 899997777776665
No 37
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=78.54 E-value=2.4 Score=40.43 Aligned_cols=75 Identities=8% Similarity=-0.000 Sum_probs=45.2
Q ss_pred hhhhHHHHHHhhcCcchhhhhHHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEc
Q 012674 309 VWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIN 388 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~~~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN 388 (458)
.||.+...+..+ . ...++.=-.++.+..|+|.+++++|+.+.. ....+++..+.-. +.+|.--||++||
T Consensus 106 ~~~~lf~~i~~~---~-~~~~~~~L~~~a~~~Gld~~~f~~~l~s~~---~~~~v~~~~~~a~----~~gI~gtPtfiIn 174 (207)
T PRK10954 106 VTPPLFEGVQKT---Q-TIQSAADIRDVFIKAGVKGEDYDAAWNSFV---VKSLVAQQEKAAA----DLQLRGVPAMFVN 174 (207)
T ss_pred HHHHHHHHHHcc---C-CCCCHHHHHHHHHHcCCCHHHHHHHHhChH---HHHHHHHHHHHHH----HcCCCCCCEEEEC
Confidence 355555555332 1 122233245667889999999999998743 2234444333211 2347788999999
Q ss_pred Ceeecc
Q 012674 389 DVQYRG 394 (458)
Q Consensus 389 ~~~yrG 394 (458)
|+..-+
T Consensus 175 Gky~v~ 180 (207)
T PRK10954 175 GKYMVN 180 (207)
T ss_pred CEEEEc
Confidence 997644
No 38
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=71.74 E-value=5.9 Score=38.73 Aligned_cols=166 Identities=18% Similarity=0.365 Sum_probs=95.7
Q ss_pred CCceeEEEEeccCCccccchhhhHHHHHH-HHHHHHHHhhCCceEEeeeEEEecCccccccccccccccccCC-cc-cCC
Q 012674 196 DQRVEYELWTNSNDECGIRCDEQMNFVKN-FKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHG-RY-CAP 272 (458)
Q Consensus 196 d~~Ve~~~w~~s~d~~~~~~d~~~~fi~~-f~~~a~~l~~~g~~~Ftphy~~~~c~~~~~~~~~~~~~Ci~~G-rY-Ca~ 272 (458)
..+|...++..+- |+ ...+||++ ..++.+.+ ..+.+ .-+++.|- +.+|.++| .. |.
T Consensus 38 ~~~v~ItlyyEaL--CP----dc~~Fi~~qL~p~~~~~-~~~~i--dl~lvPfG-----------na~~~~~~~~~~Cq- 96 (220)
T KOG3160|consen 38 APKVNITLYYEAL--CP----DCSKFIRNQLYPFFDNL-LPSIL--DLTLVPFG-----------NAQCRNDGGTFTCQ- 96 (220)
T ss_pred CCeeEEEEEEEec--Cc----cHHHHHHHHHHHHHhhc-cccee--EEEEEccC-----------CceeecCceEEEec-
Confidence 3478888888884 54 45666654 44444332 11233 33444443 34455553 11 32
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHhhhhhhcccCCcchhhhHHHHHHhhcCcchhhhh--HHHHHHHHHHcCCCHHhhccc
Q 012674 273 DPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYS--KECAEEVMKSLDLPIEKIRKC 350 (458)
Q Consensus 273 dpd~~~~~~~sG~dVV~E~lRQlCi~~~~~~~~~~~~WW~Y~~~F~~~C~~~~~~~~--~~Cs~~v~k~l~id~~~i~~C 350 (458)
.|.+-=.=|.-|-|+=+.-.. ...|..++ .|.+..+.+. .+|+ +..+++.++|++|
T Consensus 97 ----------HG~~EC~lN~LqaCvI~~l~~---~~~~l~~i-----~C~~~~~~~~~~~~C~----~~~~~~~~~i~~C 154 (220)
T KOG3160|consen 97 ----------HGEEECKLNKLQACVIDTLPD---QSDQLPFI-----RCIQGKQKLSEAEDCL----EKYGLNEKKIREC 154 (220)
T ss_pred ----------CCHHHHhhhHHHHHHHHhhhc---hHhhhcee-----hhhhcccchhHHHHHH----hhcCCCHHHHHHH
Confidence 344555556778887653211 11343443 3766534444 3454 5567779999999
Q ss_pred cCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHHHHhccCcC
Q 012674 351 IGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAICAGFKE 411 (458)
Q Consensus 351 ~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aICagf~~ 411 (458)
..... -+.||-..-. ... .....+-++|.+.|||..++-.+.. ...-||..|+.
T Consensus 155 a~s~~---g~~L~~~~~~-~T~-~~~p~~~~VPwi~vNg~~~~~~~~~--l~~~~C~~~~~ 208 (220)
T KOG3160|consen 155 ANSRL---GAKLLLKYAQ-ETA-ALAPPHPWVPWILVNGQPLQDAEQD--LVTLLCEAYKG 208 (220)
T ss_pred hcCch---HHHHHHHHHH-hhc-ccCCCCCCcCeEEECCcchHHHHHH--HHHHHHHHHhh
Confidence 97632 2334433212 222 3346789999999999999866554 77889998864
No 39
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=62.33 E-value=4.3 Score=34.47 Aligned_cols=27 Identities=44% Similarity=0.393 Sum_probs=13.6
Q ss_pred hhcchhhHHHHHHHHHHHHhcccceeeE
Q 012674 9 MASSLSKKLTALLLILTVVFSSSVSARF 36 (458)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f 36 (458)
|+|... ++++|+|+++||.++.++|+=
T Consensus 1 MaSK~~-llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 1 MASKAF-LLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred CchhHH-HHHHHHHHHHHHHHhhhhhHH
Confidence 564443 555566555555444444443
No 40
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.62 E-value=27 Score=33.63 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=49.8
Q ss_pred hhhhHHHH-HHhhcCcchhhhhHHHHHHHHHHcCCCH-HhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEE
Q 012674 309 VWWDYVTD-FHIRCSMKEKRYSKECAEEVMKSLDLPI-EKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLV 386 (458)
Q Consensus 309 ~WW~Y~~~-F~~~C~~~~~~~~~~Cs~~v~k~l~id~-~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~ 386 (458)
++|.|... |+.+=. .......|.....+...-.. .++..|.. + ......+-+++...+. -+|..=||++
T Consensus 150 ~y~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~a~~-----~gv~gTPt~~ 220 (244)
T COG1651 150 RYWAFHDALFGSQAE--AWAASILCAKDLAKADLAALDEGKKAKLN-Q-KACDALIAKNYKLAQQ-----LGVNGTPTFI 220 (244)
T ss_pred hHHHHHHHHhhcccc--chhhhhhhhhhhhhhhHHHHHhhhhhccC-h-HHHHHHHHHHHHHHHh-----cCCCcCCeEE
Confidence 47777665 443311 12233566666555443333 56677766 1 1122223333322221 2377889999
Q ss_pred EcCeeeccccChhHHHHHH
Q 012674 387 INDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 387 IN~~~yrG~L~~~~v~~aI 405 (458)
|||..|.|.+..+.+.+.|
T Consensus 221 v~~~~~~g~~~~~~l~~~i 239 (244)
T COG1651 221 VNGKLVPGLPDLDELKAII 239 (244)
T ss_pred ECCeeecCCCCHHHHHHHH
Confidence 9999999999977776655
No 41
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=53.87 E-value=7.3 Score=30.95 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=16.8
Q ss_pred eEEeeEEEEcCee-eccccCh-hHHHH
Q 012674 379 VTILPTLVINDVQ-YRGKLER-TAVLR 403 (458)
Q Consensus 379 v~~lPtl~IN~~~-yrG~L~~-~~v~~ 403 (458)
|.-.|+++|||+. |.|++.. +.+.+
T Consensus 47 v~~vPalvIng~~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 47 VMSVPALVINGKVVFVGRVPSKEELKE 73 (76)
T ss_dssp -SSSSEEEETTEEEEESS--HHHHHHH
T ss_pred CCCCCEEEECCEEEEEecCCCHHHHHH
Confidence 7788999999996 8995444 44443
No 42
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=52.28 E-value=16 Score=28.50 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=20.9
Q ss_pred eEEeeEEEEcCe-eeccccChhHHHHHH
Q 012674 379 VTILPTLVINDV-QYRGKLERTAVLRAI 405 (458)
Q Consensus 379 v~~lPtl~IN~~-~yrG~L~~~~v~~aI 405 (458)
|...||++|||. .+.|..+.+.+.+.|
T Consensus 51 v~~vPt~~~~g~~~~~G~~~~~~l~~~l 78 (82)
T TIGR00411 51 IMAVPAIVINGDVEFIGAPTKEELVEAI 78 (82)
T ss_pred CccCCEEEECCEEEEecCCCHHHHHHHH
Confidence 677899999998 667887777766544
No 43
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=47.07 E-value=1.1e+02 Score=32.56 Aligned_cols=80 Identities=21% Similarity=0.157 Sum_probs=50.3
Q ss_pred CeEEEEecCCCCHHHHH--HHHHHcCCcEEEEEeCCCCCccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHc
Q 012674 101 PTVLLLDRGECYFALKV--WHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (458)
Q Consensus 101 ~~IvLV~RG~CsF~~Kv--~nAQ~aGA~aVII~dn~~e~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~ 178 (458)
|.+++..|-.=-...|. ..|.++||.|+|+-.+....+++-+.-+-. .......||++.+...++..+..+
T Consensus 90 Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~Gd~gy~----~~s~PtPIPva~v~en~~~y~~~~--- 162 (486)
T COG4882 90 GRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVTGGDWGYS----VSSSPTPIPVAVVPENYSRYAEEA--- 162 (486)
T ss_pred CeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEeccccccc----CCCCCCCcceEEeccCcchhhccc---
Confidence 77777777554444443 378899999999987654444433221110 011246799999999988776543
Q ss_pred CCeEEEEEee
Q 012674 179 GEEVVIKLDW 188 (458)
Q Consensus 179 g~~V~v~l~~ 188 (458)
..+.+.+|.
T Consensus 163 -~rvrl~vD~ 171 (486)
T COG4882 163 -GRVRLWVDA 171 (486)
T ss_pred -eeEEEEEec
Confidence 356666665
No 44
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=46.92 E-value=33 Score=31.41 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=44.7
Q ss_pred hhhhHHHHHHhhcCcchhhhh-HHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEE
Q 012674 309 VWWDYVTDFHIRCSMKEKRYS-KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~~~-~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~I 387 (458)
..|+|+......-.......+ .+=..++.+++|+|.+++.+++.+... ...|+++++.-.. -+|.-.||++|
T Consensus 103 ~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~~~---~~~l~~~~~~a~~----~gv~g~Ptfvv 175 (193)
T cd03025 103 RLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEA---KQAIQEDQKLARE----LGINGFPTLVL 175 (193)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcChHH---HHHHHHHHHHHHH----cCCCccCEEEE
Confidence 456666664433322222222 223456778899999999999986542 2344443332222 23788999999
Q ss_pred cCee
Q 012674 388 NDVQ 391 (458)
Q Consensus 388 N~~~ 391 (458)
++..
T Consensus 176 ~~~~ 179 (193)
T cd03025 176 EDDN 179 (193)
T ss_pred EeCC
Confidence 8763
No 45
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=44.35 E-value=47 Score=24.67 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=19.3
Q ss_pred eEEeeEEEEcCeeeccccChhHHHHHH
Q 012674 379 VTILPTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 379 v~~lPtl~IN~~~yrG~L~~~~v~~aI 405 (458)
+..+|+++++|..+.| .+++.+.+.|
T Consensus 48 ~~~vP~~~~~~~~~~g-~~~~~i~~~i 73 (74)
T TIGR02196 48 QRGVPVIVIGHKIIVG-FDPEKLDQLL 73 (74)
T ss_pred CCcccEEEECCEEEee-CCHHHHHHHh
Confidence 4578999999998888 4666655543
No 46
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=41.35 E-value=44 Score=25.86 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=33.7
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHH
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLR 403 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~ 403 (458)
.+.|++.|++.+.++- . .++-+.++++. .+ ...+|.|+|||...-|..+++.+-+
T Consensus 16 k~~L~~~~i~~~~~di-~-------~~~~~~~~~~~-~g------~~~vP~v~~~g~~~~~G~~~~~~~~ 70 (72)
T TIGR02194 16 KKALEEHGIAFEEINI-D-------EQPEAIDYVKA-QG------FRQVPVIVADGDLSWSGFRPDKLKA 70 (72)
T ss_pred HHHHHHCCCceEEEEC-C-------CCHHHHHHHHH-cC------CcccCEEEECCCcEEeccCHHHHHh
Confidence 5678888888665431 1 23333444332 22 3568999999986666677766543
No 47
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=41.27 E-value=1.9e+02 Score=26.00 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=48.6
Q ss_pred CCCCCCCCeEEEEe--cCCCCHHHHHHHHHHcC-CcEEEEEeCCCCCccccCCCCCCcccCCCccccCceEEEEeHHHHH
Q 012674 94 FKSKFPRPTVLLLD--RGECYFALKVWHGQQAG-AAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGL 170 (458)
Q Consensus 94 ~~~~~~~~~IvLV~--RG~CsF~~Kv~nAQ~aG-A~aVII~dn~~e~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~ 170 (458)
+..++..|+|+++. ||.|.=.-=.+.+.+.| |=++||. .+.|++++.+.- --.||.+-...
T Consensus 44 l~G~~l~Gkilv~P~grGStvGSyVl~~l~~~G~AP~aIv~-~e~EpIla~Gai-----------~a~iPlv~~~~---- 107 (131)
T COG1786 44 LHGESLTGKILVFPGGRGSTVGSYVLYELAKNGRAPAAIVN-EEAEPILAVGAI-----------LAGIPLVDGVD---- 107 (131)
T ss_pred cccccccceEEEeeCCCCccccHHHHHHHHHcCCCchhhhh-cCCcceeeehhh-----------hcCCceEeccH----
Confidence 33344459998887 77887777778888888 5555664 455776655421 12577654433
Q ss_pred HHHHHHHcCCeEEEE
Q 012674 171 SLKEALKKGEEVVIK 185 (458)
Q Consensus 171 ~L~~~l~~g~~V~v~ 185 (458)
.+.+.++.+..|.+.
T Consensus 108 e~~~~l~~g~~v~v~ 122 (131)
T COG1786 108 EFFEELKTGDRVRVN 122 (131)
T ss_pred HHHHHhccCCEEEEc
Confidence 566778888766654
No 48
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=37.64 E-value=29 Score=28.65 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=19.8
Q ss_pred ceEEeeEEEEcCee-eccccChhHHH
Q 012674 378 DVTILPTLVINDVQ-YRGKLERTAVL 402 (458)
Q Consensus 378 ~v~~lPtl~IN~~~-yrG~L~~~~v~ 402 (458)
+|...||++|||.. ++|+.+.++++
T Consensus 62 ~V~~vPt~vidG~~~~~G~~~~~e~~ 87 (89)
T cd03026 62 GIMSVPAIFLNGELFGFGRMTLEEIL 87 (89)
T ss_pred CCccCCEEEECCEEEEeCCCCHHHHh
Confidence 47889999999875 68877766665
No 49
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=37.57 E-value=50 Score=25.53 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=28.8
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeec
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYR 393 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yr 393 (458)
.++|++.||+.+.++ .. .++-..+++....+. ..+|.|+|||+..-
T Consensus 18 ~~~L~~~gi~~~~~d-i~-------~~~~~~~el~~~~g~------~~vP~v~i~~~~iG 63 (73)
T cd03027 18 RLFLREKGLPYVEIN-ID-------IFPERKAELEERTGS------SVVPQIFFNEKLVG 63 (73)
T ss_pred HHHHHHCCCceEEEE-CC-------CCHHHHHHHHHHhCC------CCcCEEEECCEEEe
Confidence 667888998876552 11 233445555555433 35699999997553
No 50
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=34.81 E-value=55 Score=25.56 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=28.5
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeecc
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRG 394 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG 394 (458)
.++++..|++.+.++- . .++-..+++....+ ...+|+|+|||+..-|
T Consensus 16 ~~~L~~~~i~~~~~di--~------~~~~~~~~~~~~~g------~~~vP~i~i~g~~igg 62 (79)
T TIGR02181 16 KALLSSKGVTFTEIRV--D------GDPALRDEMMQRSG------RRTVPQIFIGDVHVGG 62 (79)
T ss_pred HHHHHHcCCCcEEEEe--c------CCHHHHHHHHHHhC------CCCcCEEEECCEEEcC
Confidence 5678888987665531 1 22333334433322 3678999999987644
No 51
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=33.78 E-value=15 Score=25.88 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=19.2
Q ss_pred chhhhcCCCceeccCCCccchhcccccccc
Q 012674 425 TNECLERNGGCWQDTQANITACKVYHRNFR 454 (458)
Q Consensus 425 ~~~c~~~~~~c~~~~~~~~~~c~~~~~~~~ 454 (458)
.|||..+...| .....|.+|..+|+
T Consensus 2 idEC~~~~~~C-----~~~~~C~N~~Gsy~ 26 (42)
T PF07645_consen 2 IDECAEGPHNC-----PENGTCVNTEGSYS 26 (42)
T ss_dssp SSTTTTTSSSS-----STTSEEEEETTEEE
T ss_pred ccccCCCCCcC-----CCCCEEEcCCCCEE
Confidence 58998888788 33478888888885
No 52
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=33.17 E-value=32 Score=32.55 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=32.1
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcC-----eeeccc
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIND-----VQYRGK 395 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~-----~~yrG~ 395 (458)
.++...+|+|.+.++.-............|+++.+.-... +|+-.|+++||+ ..|-|+
T Consensus 136 ~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~~----Gv~GVP~fvv~~~~~~~e~fwG~ 198 (209)
T cd03021 136 SVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALKY----GAFGLPWIVVTNDKGKTEMFFGS 198 (209)
T ss_pred HHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHHc----CCCCCCEEEEEcCCCCccceecC
Confidence 4566778998666655543111111122333332222222 488999999974 578887
No 53
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=31.23 E-value=68 Score=24.52 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=28.1
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeecc
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRG 394 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG 394 (458)
.+.|++.|++.+.++- + .++-+.+++..+.+. ...+|.|+|||+..-|
T Consensus 17 k~~L~~~~i~~~~i~i-------~-~~~~~~~~~~~~~~~-----~~~vP~v~i~g~~igg 64 (75)
T cd03418 17 KALLDKKGVDYEEIDV-------D-GDPALREEMINRSGG-----RRTVPQIFIGDVHIGG 64 (75)
T ss_pred HHHHHHCCCcEEEEEC-------C-CCHHHHHHHHHHhCC-----CCccCEEEECCEEEeC
Confidence 5678888987665421 1 122233343333322 1268999999987755
No 54
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=29.87 E-value=1.5e+02 Score=31.14 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=57.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCccc-cCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcC
Q 012674 101 PTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLIT-MDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKG 179 (458)
Q Consensus 101 ~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l~t-M~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g 179 (458)
..+.++.|+...+..+..++..+|+.+.+.++........ +..-.. ........+|++.+.+..|..+......+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (435)
T COG2234 104 LPAAFISRGNADLVETAPNAVEAGAAAFILYASVAAENFPKLGLIGT----GRALYLAEIPAVGVSKLVGNRLIFYKQAG 179 (435)
T ss_pred cccccccccccchhhcccchhhcccchheeecccccccccccccccc----cccccccccccccccccchhHHhhhhhcC
Confidence 4567778888999999999999999999999876543211 111000 01112368999999999999999888877
Q ss_pred CeEEEEEee
Q 012674 180 EEVVIKLDW 188 (458)
Q Consensus 180 ~~V~v~l~~ 188 (458)
.........
T Consensus 180 ~~~~~~~~~ 188 (435)
T COG2234 180 GGLTSKNVA 188 (435)
T ss_pred cceEEEEEe
Confidence 544444333
No 55
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=29.35 E-value=61 Score=25.77 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=17.8
Q ss_pred eEEEEcCeeeccccChhHHHHHH
Q 012674 383 PTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 383 Ptl~IN~~~yrG~L~~~~v~~aI 405 (458)
|++.||++.| ++++++.+-+++
T Consensus 48 P~v~V~~~~~-~~~t~~~i~~~~ 69 (72)
T cd03082 48 PAALVGQRPV-DGATPAAVAAAV 69 (72)
T ss_pred CeEEECCEEe-CCcCHHHHHHHH
Confidence 9999999865 788988876654
No 56
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=29.06 E-value=76 Score=25.93 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=29.6
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeecc
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRG 394 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG 394 (458)
.+++++.|++.+.++- . .++-+.+++....++ .-+|.|+|||+.+=|
T Consensus 30 k~~L~~~~i~y~~idv--~------~~~~~~~~l~~~~g~------~tvP~vfi~g~~iGG 76 (90)
T cd03028 30 VQILNQLGVDFGTFDI--L------EDEEVRQGLKEYSNW------PTFPQLYVNGELVGG 76 (90)
T ss_pred HHHHHHcCCCeEEEEc--C------CCHHHHHHHHHHhCC------CCCCEEEECCEEEeC
Confidence 5689999998777752 1 123344444433332 457999999987643
No 57
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.34 E-value=2.3e+02 Score=27.86 Aligned_cols=90 Identities=11% Similarity=0.153 Sum_probs=55.7
Q ss_pred hhhhHHHHHHhhcCcchhhhh-HHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEE
Q 012674 309 VWWDYVTDFHIRCSMKEKRYS-KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~~~-~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~I 387 (458)
+||.|+...-.-=....+..+ ..=--++-..+|+|.+++++=..+.. ..+.+-.++..+|- .+|.-.|++++
T Consensus 118 ~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~~~L~s~~--~~~avr~d~~~A~e-----~gI~gVP~fv~ 190 (225)
T COG2761 118 AQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFKADLASDA--AKDAVRQDEAAAQE-----MGIRGVPTFVF 190 (225)
T ss_pred hHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHHHHHhChH--HHHHHHHHHHHHHH-----CCCccCceEEE
Confidence 699999885543332222222 44445566677999999988776542 23444455444442 56999999999
Q ss_pred -cCeeeccccChhHHHHHH
Q 012674 388 -NDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 388 -N~~~yrG~L~~~~v~~aI 405 (458)
.+...+|-=+++....+|
T Consensus 191 d~~~~V~Gaq~~~v~~~al 209 (225)
T COG2761 191 DGKYAVSGAQPYDVLEDAL 209 (225)
T ss_pred cCcEeecCCCCHHHHHHHH
Confidence 445568876665444444
No 58
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=26.38 E-value=66 Score=29.89 Aligned_cols=72 Identities=22% Similarity=0.293 Sum_probs=39.5
Q ss_pred hhHHHHHHhhcCcchhhhhH-HHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcC
Q 012674 311 WDYVTDFHIRCSMKEKRYSK-ECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIND 389 (458)
Q Consensus 311 W~Y~~~F~~~C~~~~~~~~~-~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~ 389 (458)
++|+..-...=......|++ +=..++.+++|+|.+++.+=+.... ....+++.+..++- -+|.-.||++|.+
T Consensus 83 ~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~--~~~~~~~D~~la~~-----m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 83 RRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDE--AKQAFQEDQQLARE-----MGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHH--HHHHHHHHHHHHHH-----TT-SSSSEEEEE-
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChH--HHHHHHHHHHHHHH-----cCCCCCCEEEEEe
Confidence 45666655443223345653 6667788888999999876555432 23344554444442 3378899998877
No 59
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=25.10 E-value=1e+02 Score=29.74 Aligned_cols=55 Identities=27% Similarity=0.204 Sum_probs=32.8
Q ss_pred CCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHHHHhccCc
Q 012674 352 GDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAICAGFK 410 (458)
Q Consensus 352 ~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aICagf~ 410 (458)
.|+++..+++--.+......+. +-++=|.++|||+.-++--+..++..+|=..-.
T Consensus 45 kD~fa~~~~t~RQr~Y~~~~~~----~~vYTPQ~vVnG~~~~~g~~~~~~~~ai~~~~~ 99 (202)
T PF06764_consen 45 KDPFASPEFTQRQRAYARRFGL----RSVYTPQVVVNGREHRVGSDRAAVEAAIQAARA 99 (202)
T ss_dssp --TT--HHHHHHHHHHHHHTT-----S---SSEEEETTTEEEETT-HHHHHHHHHHHHH
T ss_pred CCccCChhHHHHHHHHHHHhCC----CCCcCCeEEECCeeeeeccCHHHHHHHHHHhhc
Confidence 4677776666554444443332 358899999999998887788888888866654
No 60
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=24.92 E-value=91 Score=31.72 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHcCCcEEEEEeCCCC------CccccCCCCCCcccCCCccccCceEEEEeHHHH-HHHHHHHHcCC
Q 012674 112 YFALKVWHGQQAGAAAVLVADSVDE------PLITMDSPEESTDANGYVEKIGIPSALIDRAFG-LSLKEALKKGE 180 (458)
Q Consensus 112 sF~~Kv~nAQ~aGA~aVII~dn~~e------~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG-~~L~~~l~~g~ 180 (458)
+-+++++-|.+|||.+|++.++.+. ....|.+|++- -.-...++||++.+-|.+- .......+.|-
T Consensus 16 ~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I---~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGv 88 (283)
T cd04727 16 TNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMI---KEIMDAVSIPVMAKVRIGHFVEAQILEALGV 88 (283)
T ss_pred CCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHH---HHHHHhCCCCeEEeeehhHHHHHHHHHHcCC
Confidence 5578999999999999999776543 23344444321 0112347999999988763 33333344454
No 61
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=24.35 E-value=68 Score=25.33 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=17.5
Q ss_pred eEEeeEEEEcC-eeeccccCh-hHHHH
Q 012674 379 VTILPTLVIND-VQYRGKLER-TAVLR 403 (458)
Q Consensus 379 v~~lPtl~IN~-~~yrG~L~~-~~v~~ 403 (458)
|...||++||| ..+.|.... +.+.+
T Consensus 47 v~~vPti~i~G~~~~~G~~~~~~~l~~ 73 (76)
T TIGR00412 47 VTATPGVAVDGELVIMGKIPSKEEIKE 73 (76)
T ss_pred CCcCCEEEECCEEEEEeccCCHHHHHH
Confidence 78899999998 447786433 44444
No 62
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.11 E-value=25 Score=36.04 Aligned_cols=34 Identities=9% Similarity=-0.077 Sum_probs=30.1
Q ss_pred EEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC
Q 012674 103 VLLLDRGECYFALKVWHGQQAGAAAVLVADSVDE 136 (458)
Q Consensus 103 IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e 136 (458)
+.++.||+|+..+|.+-+++.|-+|||..++...
T Consensus 149 ~~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~ 182 (374)
T COG5540 149 DRCNRRGNETEEDPTRERRRTRFKGVIRGSERNG 182 (374)
T ss_pred HHHHHccCccccCccccchhccccceeeccccCC
Confidence 4567899999999999999999999999987653
No 63
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=23.85 E-value=1.5e+02 Score=23.91 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=32.9
Q ss_pred HHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHH
Q 012674 333 AEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAV 401 (458)
Q Consensus 333 s~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v 401 (458)
+.+.|+..|++.+.|+--... ..-+++. ... ..| ..-+|.|+||++..-|.-+..++
T Consensus 17 ak~~L~~~g~~~~~i~~~~~~------~~~~~~~-~~~-~~g----~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 17 AKRLLDRKGVDYEEIDVDDDE------PEEAREM-VKR-GKG----QRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred HHHHHHHcCCCcEEEEecCCc------HHHHHHH-HHH-hCC----CCCcCEEEECCEEEeCcccHHHH
Confidence 367888999887766532221 1122222 222 222 46889999999977665444443
No 64
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=21.91 E-value=61 Score=26.35 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=35.5
Q ss_pred EEEEcCeeeccccChhHHHHHHhccCcCCCCCccccCCCCCchhhhcCC-Cceec--cCCCccchhcc
Q 012674 384 TLVINDVQYRGKLERTAVLRAICAGFKEATEPQICLTGDLETNECLERN-GGCWQ--DTQANITACKV 448 (458)
Q Consensus 384 tl~IN~~~yrG~L~~~~v~~aICagf~~~t~P~~C~~~~~~~~~c~~~~-~~c~~--~~~~~~~~c~~ 448 (458)
+|+|||+.|.+. ....|+.|+=+.=. ..|..|..+.....-|..+. +-|+. ++..++-||.-
T Consensus 5 ~i~idG~~v~~~-~G~til~al~~~gi--~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t 69 (82)
T PF13510_consen 5 TITIDGKPVEVP-PGETILEALLAAGI--DIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACST 69 (82)
T ss_dssp EEEETTEEEEEE-ET-BHHHHHHHTT----B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-
T ss_pred EEEECCEEEEEc-CCCHHHHHHHHCCC--eEEEeeeccCcccccCCccccceEEEEECCCcceEcccC
Confidence 789999999886 67788888877553 67899997544333442211 11543 34444677754
No 65
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=21.70 E-value=1e+02 Score=24.76 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=17.1
Q ss_pred eEEEEcCeeeccccChhHHHHHH
Q 012674 383 PTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 383 Ptl~IN~~~yrG~L~~~~v~~aI 405 (458)
|.+.||+..| ++++++.|-+.|
T Consensus 56 P~~~v~~~~~-~~~~~e~i~~il 77 (80)
T cd03081 56 PAAMIDGEVH-GRVDPEKFDALL 77 (80)
T ss_pred CEEEECCEEE-CCCCHHHHHHHH
Confidence 8999999877 577888776544
No 66
>PRK03955 hypothetical protein; Reviewed
Probab=21.12 E-value=6.1e+02 Score=22.81 Aligned_cols=68 Identities=21% Similarity=0.360 Sum_probs=40.3
Q ss_pred CCeEEEEe--cCCCCHHHHHHHHHHcC-CcEEEEEeCCCCCccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHH
Q 012674 100 RPTVLLLD--RGECYFALKVWHGQQAG-AAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEAL 176 (458)
Q Consensus 100 ~~~IvLV~--RG~CsF~~Kv~nAQ~aG-A~aVII~dn~~e~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l 176 (458)
.+||++.. ||.|.=..=.+.+.+.| |=++||... .+++.+.+.- --.||.+.-.. .+.|
T Consensus 50 ~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~~-~~~ils~GaI-----------vAgIP~V~~~~------~~~l 111 (131)
T PRK03955 50 KGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINLE-AEPIVATGAI-----------ISGIPLVDKVD------ISKL 111 (131)
T ss_pred CCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEec-CCceeEeeee-----------ecCCceEcccc------ceec
Confidence 38888876 77887555555555444 335666554 3554444321 11588886222 5678
Q ss_pred HcCCeEEEE
Q 012674 177 KKGEEVVIK 185 (458)
Q Consensus 177 ~~g~~V~v~ 185 (458)
++|..|++.
T Consensus 112 ~~G~~V~Vd 120 (131)
T PRK03955 112 KDGDRVVVD 120 (131)
T ss_pred CCCCEEEEe
Confidence 888877665
No 67
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=20.69 E-value=1.2e+02 Score=25.28 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=30.6
Q ss_pred HHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccc
Q 012674 333 AEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGK 395 (458)
Q Consensus 333 s~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~ 395 (458)
+.++++++|++.+.++- ..|+-+.+++....+ ..-+|.|+|||+..-|-
T Consensus 33 ak~lL~~~~i~~~~~di--------~~~~~~~~~l~~~tg------~~tvP~vfi~g~~iGG~ 81 (97)
T TIGR00365 33 AVQILKACGVPFAYVNV--------LEDPEIRQGIKEYSN------WPTIPQLYVKGEFVGGC 81 (97)
T ss_pred HHHHHHHcCCCEEEEEC--------CCCHHHHHHHHHHhC------CCCCCEEEECCEEEeCh
Confidence 36789999998665532 123444445443322 24789999999876443
Done!