Query 012674
Match_columns 458
No_of_seqs 295 out of 1242
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 1E-22 3.6E-27 191.1 18.6 142 38-189 32-186 (194)
2 3iib_A Peptidase M28; YP_92679 99.3 5.4E-11 1.9E-15 124.6 16.2 206 41-312 78-301 (444)
3 2ek8_A Aminopeptidase; metallo 99.2 5.4E-10 1.8E-14 116.0 16.5 177 68-312 90-270 (421)
4 3fed_A Glutamate carboxypeptid 98.9 3.2E-09 1.1E-13 117.0 12.0 106 68-178 124-268 (707)
5 3kas_A Transferrin receptor pr 98.9 2.7E-09 9.1E-14 116.5 11.0 103 68-177 105-230 (640)
6 3i6s_A Subtilisin-like proteas 98.0 8.7E-06 3E-10 89.1 8.2 96 74-188 260-356 (649)
7 1xf1_A C5A peptidase, SCP; hyd 97.8 7.9E-05 2.7E-09 84.6 12.1 83 82-186 268-351 (926)
8 1y9z_A Alkaline serine proteas 97.6 8E-05 2.7E-09 77.5 7.5 75 99-185 272-355 (441)
9 3gha_A Disulfide bond formatio 97.4 0.004 1.4E-07 57.7 14.9 159 194-405 26-187 (202)
10 3bci_A Disulfide bond protein 97.3 0.007 2.4E-07 54.5 15.1 161 194-407 8-175 (186)
11 3gyk_A 27KDA outer membrane pr 96.8 0.033 1.1E-06 49.3 15.1 86 309-405 83-168 (175)
12 3gmf_A Protein-disulfide isome 94.9 0.019 6.7E-07 53.4 4.4 68 334-408 127-195 (205)
13 3f4s_A Alpha-DSBA1, putative u 94.8 0.34 1.2E-05 45.6 12.8 90 309-405 103-206 (226)
14 3hz8_A Thiol:disulfide interch 93.8 0.091 3.1E-06 47.9 6.2 69 330-405 109-178 (193)
15 3fz5_A Possible 2-hydroxychrom 93.4 0.11 3.9E-06 47.6 6.1 92 309-407 107-199 (202)
16 3h93_A Thiol:disulfide interch 92.9 0.11 3.8E-06 46.7 5.2 89 309-404 86-178 (192)
17 4dvc_A Thiol:disulfide interch 92.9 2.3 7.7E-05 37.1 13.7 69 330-405 106-177 (184)
18 2rem_A Disulfide oxidoreductas 92.6 0.089 3.1E-06 47.1 4.1 65 333-405 114-179 (193)
19 2imf_A HCCA isomerase, 2-hydro 92.6 0.087 3E-06 48.1 4.1 92 309-407 101-193 (203)
20 1z6m_A Conserved hypothetical 92.3 2.3 8E-05 37.1 13.0 28 378-405 146-173 (175)
21 2znm_A Thiol:disulfide interch 91.2 0.17 5.7E-06 45.4 4.3 61 333-400 108-170 (195)
22 3gl5_A Putative DSBA oxidoredu 90.5 0.26 8.7E-06 46.7 5.0 97 309-412 115-215 (239)
23 3hd5_A Thiol:disulfide interch 89.7 0.36 1.2E-05 43.3 5.1 58 330-394 107-164 (195)
24 2in3_A Hypothetical protein; D 88.7 0.7 2.4E-05 41.9 6.4 90 309-405 110-205 (216)
25 3c7m_A Thiol:disulfide interch 88.0 0.23 7.7E-06 44.3 2.4 90 309-405 92-189 (195)
26 3vta_A Cucumisin; subtilisin-l 87.4 0.75 2.6E-05 49.7 6.6 62 99-179 280-341 (621)
27 1r4w_A Glutathione S-transfera 85.8 1.3 4.3E-05 41.0 6.4 95 309-410 113-215 (226)
28 3l9v_A Putative thiol-disulfid 84.0 1.2 4E-05 40.2 5.1 56 330-392 100-156 (189)
29 3kzq_A Putative uncharacterize 82.4 1.6 5.6E-05 39.6 5.5 89 310-405 104-198 (208)
30 3l9s_A Thiol:disulfide interch 81.4 0.95 3.2E-05 41.1 3.4 55 331-392 108-162 (191)
31 3feu_A Putative lipoprotein; a 80.8 0.8 2.7E-05 41.3 2.7 68 330-405 108-179 (185)
32 1un2_A DSBA, thiol-disulfide i 72.5 2.5 8.6E-05 38.6 3.6 53 334-393 10-62 (197)
33 3rpp_A Glutathione S-transfera 72.4 4.2 0.00014 38.0 5.2 98 309-410 113-215 (234)
34 3kp8_A Vkorc1/thioredoxin doma 66.7 3.1 0.00011 33.9 2.6 29 379-409 64-92 (106)
35 3gn3_A Putative protein-disulf 64.1 5.7 0.0002 35.7 4.1 65 331-405 114-181 (182)
36 1fo5_A Thioredoxin; disulfide 59.9 5.1 0.00018 29.8 2.6 28 378-405 53-81 (85)
37 1nho_A Probable thioredoxin; b 56.1 5.5 0.00019 29.6 2.1 28 378-405 52-80 (85)
38 1ilo_A Conserved hypothetical 48.7 6.9 0.00024 28.6 1.6 27 379-405 48-76 (77)
39 3gv1_A Disulfide interchange p 41.5 16 0.00054 31.7 3.0 34 378-411 106-140 (147)
40 3ic4_A Glutaredoxin (GRX-1); s 38.8 35 0.0012 25.9 4.4 62 334-405 29-90 (92)
41 4b2v_A S64; toxin, ICK; NMR {S 37.3 14 0.00046 23.5 1.3 15 261-276 1-15 (32)
42 3nzn_A Glutaredoxin; structura 31.7 30 0.001 27.3 3.0 63 334-405 39-101 (103)
43 3ipz_A Monothiol glutaredoxin- 31.6 35 0.0012 27.5 3.4 49 333-395 39-87 (109)
44 4f87_A Plycb; lysin, bacteriop 31.5 21 0.00072 26.4 1.7 20 158-177 52-71 (72)
45 3kp9_A Vkorc1/thioredoxin doma 30.1 23 0.00078 34.5 2.3 28 378-405 248-275 (291)
46 1aba_A Glutaredoxin; electron 28.0 44 0.0015 25.4 3.3 57 334-394 21-78 (87)
47 3qmx_A Glutaredoxin A, glutare 27.8 43 0.0015 26.6 3.3 49 334-395 33-81 (99)
48 1kli_L Factor VIIA; extrinsic 27.8 13 0.00043 28.4 -0.0 15 423-437 3-17 (69)
49 1t1v_A SH3BGRL3, SH3 domain-bi 27.7 46 0.0016 25.7 3.4 50 333-394 24-73 (93)
50 1t3b_A Thiol:disulfide interch 26.8 31 0.001 31.3 2.4 27 379-405 179-206 (211)
51 2lqo_A Putative glutaredoxin R 26.7 73 0.0025 25.2 4.4 60 333-405 20-79 (92)
52 2axo_A Hypothetical protein AT 25.9 63 0.0022 31.1 4.6 29 380-408 113-141 (270)
53 4aor_D Trypsin inhibitor 3; hy 24.5 14 0.00049 24.4 -0.2 16 403-421 8-23 (37)
54 2yan_A Glutaredoxin-3; oxidore 23.7 56 0.0019 25.8 3.2 48 333-394 38-85 (105)
55 1r7h_A NRDH-redoxin; thioredox 23.5 58 0.002 23.2 3.1 56 334-405 18-73 (75)
56 3zyw_A Glutaredoxin-3; metal b 22.5 67 0.0023 26.1 3.5 47 334-394 38-84 (111)
57 3pl5_A SMU_165, putative uncha 21.9 73 0.0025 31.3 4.3 48 350-408 39-91 (320)
58 2ct6_A SH3 domain-binding glut 21.5 54 0.0019 26.5 2.7 52 334-393 31-84 (111)
59 1ego_A Glutaredoxin; electron 21.4 76 0.0026 23.3 3.4 16 379-394 56-71 (85)
60 1wik_A Thioredoxin-like protei 21.2 51 0.0017 26.4 2.5 48 333-394 36-83 (109)
61 3jr7_A Uncharacterized EGV fam 21.0 91 0.0031 30.2 4.7 31 378-408 41-74 (298)
62 2trx_A Thioredoxin; electron t 20.7 56 0.0019 25.0 2.6 27 379-405 72-103 (108)
63 3gx8_A Monothiol glutaredoxin- 20.0 61 0.0021 26.8 2.8 49 334-394 38-87 (121)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.90 E-value=1e-22 Score=191.10 Aligned_cols=142 Identities=21% Similarity=0.334 Sum_probs=112.0
Q ss_pred EecceEEEE--cCCc---cceeeeccccccCCCCCCCceEEEEEecC--CCCCCCCCCCCCC-CC--CCCCCCCeEEEEe
Q 012674 38 VEKSSIRVL--HPQS---LRSKHDSAIGNFGIPDYGGFMVGSVIYPD--KGASGCQPFEGDK-PF--KSKFPRPTVLLLD 107 (458)
Q Consensus 38 ve~~~l~V~--~P~~---l~~~~~~~~A~FG~~~yg~~l~G~lv~~~--~~~~gC~~~~~~~-~~--~~~~~~~~IvLV~ 107 (458)
.....+.|+ .|.. ....+....|+||.+.|.+.++|.|+++. ++.+||++.++.. +. .++..+++||||+
T Consensus 32 ~~~A~vn~sy~d~~~~~n~t~~~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~ 111 (194)
T 3icu_A 32 VWTAYLNVSWRVPHTGVNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQ 111 (194)
T ss_dssp EEEEEEEEEEECCSSCTTCEEEEEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEE
T ss_pred EEEEEEEEEEECCCCCccceeeecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEE
Confidence 445555554 3433 22357889999999999999999999986 4789999987321 11 1122358999999
Q ss_pred cCC-CCHHHHHHHHHHcCCcEEEEEeCCC--CCccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeEEE
Q 012674 108 RGE-CYFALKVWHGQQAGAAAVLVADSVD--EPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVI 184 (458)
Q Consensus 108 RG~-CsF~~Kv~nAQ~aGA~aVII~dn~~--e~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v 184 (458)
||+ |+|.+|++|||++||+||||||+.. +.+++|+.++ ...||++||++++|+.|+++|++|.+|++
T Consensus 112 RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~----------~~~IPsv~Is~~~G~~L~~~L~~G~~Vtv 181 (194)
T 3icu_A 112 RGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG----------AVDIVAIMIGNLKGTKILQSIQRGIQVTM 181 (194)
T ss_dssp SCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTT----------CCSSEEEEECHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCC----------CCceeEEEECHHHHHHHHHHHHCCCeEEE
Confidence 999 9999999999999999999999852 3457786431 25799999999999999999999999999
Q ss_pred EEeec
Q 012674 185 KLDWT 189 (458)
Q Consensus 185 ~l~~~ 189 (458)
+|...
T Consensus 182 ti~vg 186 (194)
T 3icu_A 182 VIEVG 186 (194)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 99884
No 2
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=99.27 E-value=5.4e-11 Score=124.57 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=126.3
Q ss_pred ceEEEEcCCccceeeeccccccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCC--------
Q 012674 41 SSIRVLHPQSLRSKHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECY-------- 112 (458)
Q Consensus 41 ~~l~V~~P~~l~~~~~~~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~Cs-------- 112 (458)
.+++|+.|.. ..+......++...+.+.++|+||++.+ ...|.... +.+++ |+||||+||.|.
T Consensus 78 ~~~~~~~~~~--~~~~~~~l~~s~~tp~~~vta~lV~v~~-~~~~~~~~-~~dvk-----GKIVlv~~~~~~~~~~~~y~ 148 (444)
T 3iib_A 78 AKASILSPFP--QPLVVTALGGSIATPAQGLSATIVRFDT-LQDLQNAE-AGSLN-----DKIAFIDAKTERHRDGKGYG 148 (444)
T ss_dssp EEEEEEESSC--EEECEEECBTCCCCCTTCEEEEEEEESS-HHHHHTSC-TTTTT-----TCEEEECCCCCCCTTCHHHH
T ss_pred eEEEEeCCCC--ceEEEEeccCCCCCCCCCeEEEEEecCC-HHHHhhcc-ccccC-----ccEEEEeCCCCCCccccccc
Confidence 3466666642 2344444445555556789999999642 23343321 22344 999999999995
Q ss_pred -HHHHH----HHHHHcCCcEEEEEeCCCCCc-----cccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCeE
Q 012674 113 -FALKV----WHGQQAGAAAVLVADSVDEPL-----ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEV 182 (458)
Q Consensus 113 -F~~Kv----~nAQ~aGA~aVII~dn~~e~l-----~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V 182 (458)
|..|. .+|+++||+||||+++..... .+|..+ .....||++.|+.++|+.|+++++.|+.+
T Consensus 149 ~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~---------~~~~~IP~~~Is~~da~~L~~~l~~g~~~ 219 (444)
T 3iib_A 149 QTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYE---------EGVTAIPAAAISNPDADLINAMLKRDKEV 219 (444)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCC---------TTSCCCCEEEECHHHHHHHHHHHTTTCCC
T ss_pred chhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccC---------CCCCCCCeEEecHHHHHHHHHHHhCCCCe
Confidence 77774 579999999999998754321 112211 12468999999999999999999988777
Q ss_pred EEEEeeccCCCCCCCceeEEEEeccCCccccchhhhHHHHHHHHHHHHHHhhCCceEEeeeEEEecCccccccccccccc
Q 012674 183 VIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQ 262 (458)
Q Consensus 183 ~v~l~~~~~~p~pd~~Ve~~~w~~s~d~~~~~~d~~~~fi~~f~~~a~~l~~~g~~~Ftphy~~~~c~~~~~~~~~~~~~ 262 (458)
.++++.....- ..+..+.++....... .....+.+.-||-+|.-
T Consensus 220 ~v~l~~~~~~~--~~~~~~Nvi~~~~g~~---------------------~~~~~i~~~aH~Ds~~~------------- 263 (444)
T 3iib_A 220 VISLELGSERR--GETTSYNVIAEVKGST---------------------KADEIVLIGAHLDSWDE------------- 263 (444)
T ss_dssp EEEEEEEEEEE--EEEEEEEEEEEECCST---------------------EEEEEEEEEEECCCCSS-------------
T ss_pred EEEEEEeeeEc--CCceeEEEEEEEeCCC---------------------CCCCEEEEEeecccCCC-------------
Confidence 77776632110 0122344444442110 00124666667655420
Q ss_pred cccCCcccCCCCCCCCCCCCcchhhHHHHHHHHhhhhhhcccCCcchhhh
Q 012674 263 CINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWD 312 (458)
Q Consensus 263 Ci~~GrYCa~dpd~~~~~~~sG~dVV~E~lRQlCi~~~~~~~~~~~~WW~ 312 (458)
| |.. .++.+|.-+++|.+|.|--........+.+.||+
T Consensus 264 ----g------~Ga--~D~~sG~a~~le~a~~l~~~~~~~~~~i~f~~~~ 301 (444)
T 3iib_A 264 ----G------TGA--IDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYA 301 (444)
T ss_dssp ----S------CCT--TTTHHHHHHHHHHHHHHHTSSSCCSEEEEEEEES
T ss_pred ----C------CCC--ccchHHHHHHHHHHHHHHhcCCCCCCeEEEEEEC
Confidence 0 222 2466899999999999875432222236677776
No 3
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=99.15 E-value=5.4e-10 Score=115.96 Aligned_cols=177 Identities=18% Similarity=0.232 Sum_probs=109.5
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCcc-ccCCCCC
Q 012674 68 GGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLI-TMDSPEE 146 (458)
Q Consensus 68 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l~-tM~~~~d 146 (458)
.+.++|.||++. .| .+.+ |.....+|+||||+||+|+|.+|+.+|+++||+||||+++.+.++. +++.
T Consensus 90 ~g~v~a~lv~~~---~G-~~~D----~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~--- 158 (421)
T 2ek8_A 90 NSDVTAELVYVG---LG-TTAD----VAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGG--- 158 (421)
T ss_dssp CEEEEEEEEECT---TC-CTTT----TTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSS---
T ss_pred CCCcceEEEECC---CC-Chhh----cCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCC---
Confidence 458899998853 33 2222 2222344999999999999999999999999999999998644331 1211
Q ss_pred CcccCCCccccCceEEEEeHHHHHHHHHHH---HcCCeEEEEEeeccCCCCCCCceeEEEEeccCCccccchhhhHHHHH
Q 012674 147 STDANGYVEKIGIPSALIDRAFGLSLKEAL---KKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVK 223 (458)
Q Consensus 147 ~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l---~~g~~V~v~l~~~~~~p~pd~~Ve~~~w~~s~d~~~~~~d~~~~fi~ 223 (458)
.....||++.|+.++++.|++.+ ++| .+.+++.... . ..+..+.++........
T Consensus 159 -------~~~~~IP~~~Is~~~a~~L~~~l~~~~~g-~~~v~l~~~~-~---~~~~~~Nvi~~~~g~~~----------- 215 (421)
T 2ek8_A 159 -------SDASFVAAVGITKQEGDALAANLRAGEKI-TATVKVAGAE-V---KTLTSHNVIATKKPDAN----------- 215 (421)
T ss_dssp -------CCTTCCEEEEECHHHHHHHHHHHHTTCCC-EEEEEEESCE-E---EEEEEEEEEEEECCCSS-----------
T ss_pred -------CCCCCccEEEeCHHHHHHHHHHhhhhccC-Cccccccccc-c---ccccccceEEEecCccc-----------
Confidence 12467999999999999999999 443 4555555422 1 12223444433321100
Q ss_pred HHHHHHHHHhhCCceEEeeeEEEecCccccccccccccccccCCcccCCCCCCCCCCCCcchhhHHHHHHHHhhhhhhcc
Q 012674 224 NFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANE 303 (458)
Q Consensus 224 ~f~~~a~~l~~~g~~~Ftphy~~~~c~~~~~~~~~~~~~Ci~~GrYCa~dpd~~~~~~~sG~dVV~E~lRQlCi~~~~~~ 303 (458)
+ -+....+.+.-||-+|. .| |.. .++.+|.-+++|.+|.|--++...
T Consensus 216 --~-----~~~~~~v~~~aH~D~v~-----------------~g------~Ga--~D~~~G~a~~le~~~~l~~~~~~~- 262 (421)
T 2ek8_A 216 --K-----KNTNDIIIIGSHHDSVE-----------------KA------PGA--NDDASGVAVTLELARVMSKLKTDT- 262 (421)
T ss_dssp --T-----TCCCCEEEEEEECCCCT-----------------TC------CCT--TTTHHHHHHHHHHHHHHTTSCCSS-
T ss_pred --C-----CCCCCEEEEecccccCC-----------------CC------CCC--CCCcHhHHHHHHHHHHHhccCCCc-
Confidence 0 00123567777766553 01 221 146689999999999987643321
Q ss_pred cCCcchhhh
Q 012674 304 SNRSWVWWD 312 (458)
Q Consensus 304 ~~~~~~WW~ 312 (458)
...+.||.
T Consensus 263 -~i~~~~~~ 270 (421)
T 2ek8_A 263 -ELRFITFG 270 (421)
T ss_dssp -EEEEEEES
T ss_pred -eEEEEEEC
Confidence 24445553
No 4
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.93 E-value=3.2e-09 Score=117.02 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=70.1
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCCC---CCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC--------
Q 012674 68 GGFMVGSVIYPDKGASGCQPFEGDKPFK---SKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDE-------- 136 (458)
Q Consensus 68 g~~l~G~lv~~~~~~~gC~~~~~~~~~~---~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e-------- 136 (458)
.+.++|.|||+ ..||.. ++. .+. ..+..|+||||+||.|+|.+|+++|+++||+|||||++..+
T Consensus 124 ~G~v~g~lV~v---~~G~~~-Df~-~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~ 198 (707)
T 3fed_A 124 QGMPEGDLVYV---NYARTE-DFF-KLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQP 198 (707)
T ss_dssp CBCCEECEEEC---TTCCHH-HHH-HHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCB
T ss_pred CCceEEEEEEe---cCCchh-hHH-HHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhcccccccc
Confidence 46899999996 367632 110 000 12345999999999999999999999999999999986310
Q ss_pred ---------------CccccCCCCCC-ccc----C--------CCccccCceEEEEeHHHHHHHHHHHHc
Q 012674 137 ---------------PLITMDSPEES-TDA----N--------GYVEKIGIPSALIDRAFGLSLKEALKK 178 (458)
Q Consensus 137 ---------------~l~tM~~~~d~-~~~----~--------~~~~~i~IPsv~Is~~dG~~L~~~l~~ 178 (458)
.+..+..++|. +++ . +......||++-|+.++|+.|++.|..
T Consensus 199 yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 199 YPKGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp TTTSSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CCCCccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 00000011210 000 0 001236899999999999999999864
No 5
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.93 E-value=2.7e-09 Score=116.50 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=69.2
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC-Ccc-------
Q 012674 68 GGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDE-PLI------- 139 (458)
Q Consensus 68 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e-~l~------- 139 (458)
.+.++|.||++ ..|+.. ++. .++ .+.+|+||||+||.|+|..|+.+|+++||+|||||++..+ +..
T Consensus 105 ~g~v~g~lV~v---g~G~~~-D~~-~l~-vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~ 178 (640)
T 3kas_A 105 AATVTGKLVHA---NFGTKK-DFE-DLY-TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFF 178 (640)
T ss_dssp CEEEEECEEEC---TTCCHH-HHH-TCS-SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCC
T ss_pred CCceEEEEEEe---cCCChh-hHH-Hhh-cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccc
Confidence 46789999996 356632 211 121 2345999999999999999999999999999999997632 110
Q ss_pred ---ccCCCCC-Cccc-----------CCCccccCceEEEEeHHHHHHHHHHHH
Q 012674 140 ---TMDSPEE-STDA-----------NGYVEKIGIPSALIDRAFGLSLKEALK 177 (458)
Q Consensus 140 ---tM~~~~d-~~~~-----------~~~~~~i~IPsv~Is~~dG~~L~~~l~ 177 (458)
.++ ++| -+++ ........||++.|+.++|+.|++.+.
T Consensus 179 G~~~~~-~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 179 GHAHLG-TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp EECCSS-SSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cccccC-CCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 000 011 0000 000123579999999999999998764
No 6
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=98.00 E-value=8.7e-06 Score=89.08 Aligned_cols=96 Identities=15% Similarity=0.191 Sum_probs=71.0
Q ss_pred EEEecCCCCCCCCCCCC-CCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCccccCCCCCCcccCC
Q 012674 74 SVIYPDKGASGCQPFEG-DKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANG 152 (458)
Q Consensus 74 ~lv~~~~~~~gC~~~~~-~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l~tM~~~~d~~~~~~ 152 (458)
.|+++. ....|.+... ...+ +.+++|||++||.|.|.+|..+++++||.++|++|+. +.+. .
T Consensus 260 plv~~~-~~~~C~~~~l~~~~v---dl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~-~~~~-----~------- 322 (649)
T 3i6s_A 260 PVIYNK-TLSDCSSEELLSQVE---NPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDP-GVFR-----S------- 322 (649)
T ss_dssp EEECCT-TTTTCCCHHHHTTSS---SGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCG-GGGG-----C-------
T ss_pred eeEecc-ccccccccccccccc---ccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCc-cccc-----c-------
Confidence 455533 5678987531 1222 0139999999999999999999999999999999875 2211 0
Q ss_pred CccccCceEEEEeHHHHHHHHHHHHcCCeEEEEEee
Q 012674 153 YVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDW 188 (458)
Q Consensus 153 ~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l~~ 188 (458)
....||+++|+.++|+.|++++.++....+++.+
T Consensus 323 --~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~ 356 (649)
T 3i6s_A 323 --ATFPNPGVVVNKKEGKQVINYVKNSVTPTATITF 356 (649)
T ss_dssp --CCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred --ccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEee
Confidence 1257999999999999999999987654455544
No 7
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=97.81 E-value=7.9e-05 Score=84.62 Aligned_cols=83 Identities=30% Similarity=0.467 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCc-cccCCCCCCcccCCCccccCce
Q 012674 82 ASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL-ITMDSPEESTDANGYVEKIGIP 160 (458)
Q Consensus 82 ~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l-~tM~~~~d~~~~~~~~~~i~IP 160 (458)
..||.+... .. .+++|||++||.|+|.+|+.+|+++||.++||+|+..... +.+ + ....||
T Consensus 268 ~~g~~~~~~-~~-----v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~--~----------~~~~iP 329 (926)
T 1xf1_A 268 NRGTKEDDF-KD-----VKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL--P----------NVDQMP 329 (926)
T ss_dssp TTSCSTTTT-TT-----CTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC--C----------CSTTCC
T ss_pred CCCCCccch-hh-----cCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc--C----------cccccc
Confidence 357875432 23 3499999999999999999999999999999998764322 221 1 135699
Q ss_pred EEEEeHHHHHHHHHHHHcCCeEEEEE
Q 012674 161 SALIDRAFGLSLKEALKKGEEVVIKL 186 (458)
Q Consensus 161 sv~Is~~dG~~L~~~l~~g~~V~v~l 186 (458)
+++|++++|+.|+. +..+++.+
T Consensus 330 ~~~i~~~~g~~l~~----~~~~ti~~ 351 (926)
T 1xf1_A 330 AAFISRKDGLLLKD----NPQKTITF 351 (926)
T ss_dssp EEEECHHHHHHHHH----CSSCEEEE
T ss_pred EEEEeHHHHHHHHh----CCceEEEe
Confidence 99999999998874 34444444
No 8
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.61 E-value=8e-05 Score=77.49 Aligned_cols=75 Identities=25% Similarity=0.286 Sum_probs=57.8
Q ss_pred CCCeEEEEecCCC-----CHHHHHHHHHHcCCcEEEEEeCCCCCc----cccCCCCCCcccCCCccccCceEEEEeHHHH
Q 012674 99 PRPTVLLLDRGEC-----YFALKVWHGQQAGAAAVLVADSVDEPL----ITMDSPEESTDANGYVEKIGIPSALIDRAFG 169 (458)
Q Consensus 99 ~~~~IvLV~RG~C-----sF~~Kv~nAQ~aGA~aVII~dn~~e~l----~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG 169 (458)
.+++|+|++||.| +|.+|+.+|+++||+++|||++...+- ..+. ......||+++|++++|
T Consensus 272 ~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~----------~~~~~~~p~~~v~~~~g 341 (441)
T 1y9z_A 272 MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVD----------ANSDITVPSVSVDRATG 341 (441)
T ss_dssp CTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEEC----------TTCCCCSCEEEECHHHH
T ss_pred ccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccc----------cccCccccEEEEeHHHH
Confidence 4499999999987 899999999999999999998864221 1111 11246799999999999
Q ss_pred HHHHHHHHcCCeEEEE
Q 012674 170 LSLKEALKKGEEVVIK 185 (458)
Q Consensus 170 ~~L~~~l~~g~~V~v~ 185 (458)
+.|++++. ..++++
T Consensus 342 ~~l~~~~~--~~~t~~ 355 (441)
T 1y9z_A 342 LALKAKLG--QSTTVS 355 (441)
T ss_dssp HHHHTTTT--SEEEEE
T ss_pred HHHHHHhc--CCcccc
Confidence 99998874 345443
No 9
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=97.37 E-value=0.004 Score=57.74 Aligned_cols=159 Identities=14% Similarity=0.234 Sum_probs=93.6
Q ss_pred CCCCceeEEEEeccCCccccchhhhHHHHHHHHH-HHHHHhhCCceEEeeeEEEecCccccccccccccccccCCcccCC
Q 012674 194 HPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKG-HAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAP 272 (458)
Q Consensus 194 ~pd~~Ve~~~w~~s~d~~~~~~d~~~~fi~~f~~-~a~~l~~~g~~~Ftphy~~~~c~~~~~~~~~~~~~Ci~~GrYCa~ 272 (458)
.|+..|+...|++.. |+ +| ..|-....+ +.+.+.+.|++.|.-+...+
T Consensus 26 ~~~a~vtvvef~D~~--CP-~C---~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~------------------------- 74 (202)
T 3gha_A 26 KDDAPVTVVEFGDYK--CP-SC---KVFNSDIFPKIQKDFIDKGDVKFSFVNVMF------------------------- 74 (202)
T ss_dssp CTTCSEEEEEEECTT--CH-HH---HHHHHHTHHHHHHHTTTTTSEEEEEEECCC-------------------------
T ss_pred CCCCCEEEEEEECCC--Ch-hH---HHHHHHhhHHHHHHhccCCeEEEEEEecCc-------------------------
Confidence 457888888888774 54 34 345444432 33333224677776663322
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHhhhhhhcccCCcchhhhHHHHHHhhcCcchhh-hhHHHHHHHHHH-cCCCHHhhccc
Q 012674 273 DPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKR-YSKECAEEVMKS-LDLPIEKIRKC 350 (458)
Q Consensus 273 dpd~~~~~~~sG~dVV~E~lRQlCi~~~~~~~~~~~~WW~Y~~~F~~~C~~~~~~-~~~~Cs~~v~k~-l~id~~~i~~C 350 (458)
.|..+..-..--.|+++.... +||+|....-..=...... .+.+=-.++.++ +|+|.+++++|
T Consensus 75 ----------~~~~s~~Aa~aa~a~~~~~~~-----~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~ 139 (202)
T 3gha_A 75 ----------HGKGSRLAALASEEVWKEDPD-----SFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKEN 139 (202)
T ss_dssp ----------SHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHH
T ss_pred ----------cchhHHHHHHHHHHHHhhCHH-----HHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHH
Confidence 112233323334577766545 7999988743321211111 223445567777 89999999999
Q ss_pred cCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHHHH
Q 012674 351 IGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 351 ~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aI 405 (458)
+.+.. ....+++..+.-.. .+|.-.||++|||+.+.|..+.+.+.++|
T Consensus 140 l~s~~---~~~~v~~~~~~a~~----~gV~gtPtfvvnG~~~~G~~~~e~l~~~i 187 (202)
T 3gha_A 140 LDKET---FASQVEKDSDLNQK----MNIQATPTIYVNDKVIKNFADYDEIKETI 187 (202)
T ss_dssp HHHTT---THHHHHHHHHHHHH----TTCCSSCEEEETTEECSCTTCHHHHHHHH
T ss_pred HhChH---HHHHHHHHHHHHHH----cCCCcCCEEEECCEEecCCCCHHHHHHHH
Confidence 97653 22233433332222 23778899999999999988887766665
No 10
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=97.27 E-value=0.007 Score=54.53 Aligned_cols=161 Identities=12% Similarity=0.137 Sum_probs=90.3
Q ss_pred CCCCceeEEEEeccCCccccchhhhHHHHHHHH-HHHHHHhhCCceEEeeeEEEecCccccccccccccccccCCcccCC
Q 012674 194 HPDQRVEYELWTNSNDECGIRCDEQMNFVKNFK-GHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAP 272 (458)
Q Consensus 194 ~pd~~Ve~~~w~~s~d~~~~~~d~~~~fi~~f~-~~a~~l~~~g~~~Ftphy~~~~c~~~~~~~~~~~~~Ci~~GrYCa~ 272 (458)
.|+..+...+|++.. |+ --+.|-..+. .+.+.+.+.|.+.|.-+.... .
T Consensus 8 ~~~a~~~i~~f~D~~--Cp----~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~------------------~------ 57 (186)
T 3bci_A 8 SKNGKPLVVVYGDYK--CP----YCKELDEKVMPKLRKNYIDNHKVEYQFVNLAF------------------L------ 57 (186)
T ss_dssp ---CCCEEEEEECTT--CH----HHHHHHHHHHHHHHHHTTTTTSSEEEEEECCC------------------S------
T ss_pred CCCCCeEEEEEECCC--Ch----hHHHHHHHHHHHHHHHhccCCeEEEEEEecCc------------------C------
Confidence 457888999999985 54 3355555542 233333223455555442211 0
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHhhhhhhcccCCcchhhhHHHHHHhhcCcc-hhhhhHHHHHHHHHHcCCCHHh---hc
Q 012674 273 DPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMK-EKRYSKECAEEVMKSLDLPIEK---IR 348 (458)
Q Consensus 273 dpd~~~~~~~sG~dVV~E~lRQlCi~~~~~~~~~~~~WW~Y~~~F~~~C~~~-~~~~~~~Cs~~v~k~l~id~~~---i~ 348 (458)
|.++..-..--+|+.++..+ ++|+|....-..=... ....+.+=-.++.+++|+|.++ ++
T Consensus 58 -----------~~~s~~aa~a~~~a~~~~~~-----~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~ 121 (186)
T 3bci_A 58 -----------GKDSIVGSRASHAVLMYAPK-----SFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKII 121 (186)
T ss_dssp -----------CTTHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHH
T ss_pred -----------CcchHHHHHHHHHHHHhCHH-----HHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 01222223334566665433 6888888643321111 0112345556778889999999 99
Q ss_pred ccc--CCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHHHHhc
Q 012674 349 KCI--GDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAICA 407 (458)
Q Consensus 349 ~C~--~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aICa 407 (458)
+|+ .+.. ....+++..+.-.. .+|.-.||++|||+.+.|..+.+.+.++|=.
T Consensus 122 ~~~~~~~~~---~~~~v~~~~~~a~~----~gv~GtPt~vvnG~~~~G~~~~~~l~~~i~~ 175 (186)
T 3bci_A 122 KDYKTKDSK---SWKAAEKDKKIAKD----NHIKTTPTAFINGEKVEDPYDYESYEKLLKD 175 (186)
T ss_dssp HHHHSTTCH---HHHHHHHHHHHHHH----TTCCSSSEEEETTEECSCTTCHHHHHHHHHC
T ss_pred HHHHhcCHH---HHHHHHHHHHHHHH----cCCCCCCeEEECCEEcCCCCCHHHHHHHHHH
Confidence 999 5432 22234433332212 2377889999999999998888777776643
No 11
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=96.84 E-value=0.033 Score=49.27 Aligned_cols=86 Identities=12% Similarity=0.175 Sum_probs=58.5
Q ss_pred hhhhHHHHHHhhcCcchhhhhHHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEc
Q 012674 309 VWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIN 388 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~~~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN 388 (458)
.+|.|...+-.. . ...+.+=-.++.+.+|+|.+++++|+.+.. ....+++..+.-.. .+|.-.||++||
T Consensus 83 ~~~~~~~~lf~~---~-~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~---~~~~v~~~~~~a~~----~gv~gtPt~~i~ 151 (175)
T 3gyk_A 83 KYEAFHWALMGM---S-GKANETGVLRIAREVGLDTEQLQRDMEAPE---VTAHIAQSMALAQK----LGFNGTPSFVVE 151 (175)
T ss_dssp CHHHHHHHHHTC---S-SCCSHHHHHHHHHHTTCCHHHHHHHTTCHH---HHHHHHHHHHHHHH----HTCCSSSEEEET
T ss_pred HHHHHHHHHHhc---C-CCCCHHHHHHHHHHcCCCHHHHHHHHhChH---HHHHHHHHHHHHHH----cCCccCCEEEEC
Confidence 578887765432 1 233455566788999999999999998653 22334433332212 237778999999
Q ss_pred CeeeccccChhHHHHHH
Q 012674 389 DVQYRGKLERTAVLRAI 405 (458)
Q Consensus 389 ~~~yrG~L~~~~v~~aI 405 (458)
|+.+.|..+.+.+.++|
T Consensus 152 g~~~~G~~~~~~l~~~i 168 (175)
T 3gyk_A 152 DALVPGFVEQSQLQDAV 168 (175)
T ss_dssp TEEECSCCCHHHHHHHH
T ss_pred CEEeeCCCCHHHHHHHH
Confidence 99999998887766665
No 12
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=94.92 E-value=0.019 Score=53.41 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=47.1
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHH-hcCCCCCceEEeeEEEEcCeeeccccChhHHHHHHhcc
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQ-VGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAICAG 408 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q-~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aICag 408 (458)
.++.+++|+|.+++++|+.+.. ....+++..+.- .. .+|.-.||++|||+.+.|..+.+.+.++|=..
T Consensus 127 ~~~a~~~Gld~~~~~~~l~s~~---~~~~v~~~~~~a~~~----~GV~GtPtfvvng~~~~G~~~~e~l~~~i~~~ 195 (205)
T 3gmf_A 127 YDFMAARGMDRSTLDRCLSNEA---LAKKLAAETDEAINQ----YNVSGTPSFMIDGILLAGTHDWASLRPQILAR 195 (205)
T ss_dssp HHHHHTTTCCHHHHHHHHTCHH---HHHHHHHHHHHHHHH----HCCCSSSEEEETTEECTTCCSHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHcCHH---HHHHHHHHHHHHHHH----cCCccCCEEEECCEEEeCCCCHHHHHHHHHHH
Confidence 3466788999999999998643 222333332221 11 23677899999999999999988877776433
No 13
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=94.82 E-value=0.34 Score=45.59 Aligned_cols=90 Identities=11% Similarity=0.192 Sum_probs=55.4
Q ss_pred hhhhHHHHHHhh--cCcchhhhhHHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhc-CCCCCceEEeeEE
Q 012674 309 VWWDYVTDFHIR--CSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVG-RGSRGDVTILPTL 385 (458)
Q Consensus 309 ~WW~Y~~~F~~~--C~~~~~~~~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~-~~~~~~v~~lPtl 385 (458)
++|+|....-.. -.........+=-.++.+.+|+|.+++++|+.+.. ....++++.+.-.. . +|.-.||+
T Consensus 103 ~f~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~---~~~~v~~~~~~a~~~~----GV~GtPtf 175 (226)
T 3f4s_A 103 DYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKK---IMDKIVNDKSLAINKL----GITAVPIF 175 (226)
T ss_dssp HHHHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHH---HHHHHHHHHHHHHHHH----CCCSSCEE
T ss_pred HHHHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHH---HHHHHHHHHHHHHHHc----CCCcCCEE
Confidence 688887764322 11000011233445677889999999999998643 22334433332111 2 26778999
Q ss_pred EE---cCeeeccccC--------hhHHHHHH
Q 012674 386 VI---NDVQYRGKLE--------RTAVLRAI 405 (458)
Q Consensus 386 ~I---N~~~yrG~L~--------~~~v~~aI 405 (458)
+| ||+.+.|.++ .+.+.++|
T Consensus 176 vv~~~nG~~~~Ga~~~~~~G~~~~e~l~~~I 206 (226)
T 3f4s_A 176 FIKLNDDKSYIEHNKVKHGGYKELKYFTNVI 206 (226)
T ss_dssp EEEECCTTCCCCGGGGEEESCCCHHHHHHHH
T ss_pred EEEcCCCEEeeCCCCcccccccCHHHHHHHH
Confidence 99 9999999887 76666555
No 14
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=93.77 E-value=0.091 Score=47.86 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=46.6
Q ss_pred HHHHHHHHHHc-CCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHHHH
Q 012674 330 KECAEEVMKSL-DLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 330 ~~Cs~~v~k~l-~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aI 405 (458)
.+=-.++.+++ |+|.+++++|+.+.. ....+++..+.-.. .+|.-.||++|||+.+.|..+.+..+++|
T Consensus 109 ~~~l~~~a~~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~a~~----~gv~gtPt~vvng~~~~~~~~~e~l~~~i 178 (193)
T 3hz8_A 109 PEVLKKWLGEQTAFDGKKVLAAYESPE---SQARADKMQELTET----FQIDGVPTVIVGGKYKVEFADWESGMNTI 178 (193)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHSHH---HHHHHHHHHHHHHH----TTCCSSSEEEETTTEEECCSSHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHcCHH---HHHHHHHHHHHHHH----hCCCcCCEEEECCEEEecCCCHHHHHHHH
Confidence 44456678888 999999999998643 23334443332222 23778899999999998876655554443
No 15
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}
Probab=93.38 E-value=0.11 Score=47.56 Aligned_cols=92 Identities=16% Similarity=0.111 Sum_probs=58.8
Q ss_pred hhhhHHHHHHhhcCcchhh-hhHHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEE
Q 012674 309 VWWDYVTDFHIRCSMKEKR-YSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~-~~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~I 387 (458)
+.|+|....-..-...... ...+=-.++.+.+|+|.+++.+++.+.. ....+++..+.-... +|.-.||++|
T Consensus 107 ~~~~~~~alf~a~~~~g~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~a~~~----Gv~GvPtfvv 179 (202)
T 3fz5_A 107 AATAFAQRVFDLYFSDRLDTASPEAVSRLGPEVGLEPEALLAGIADPA---LKETVRKIGEDAVAR----GIFGSPFFLV 179 (202)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCHHHHHTTHHHHTCCHHHHHHHTTCHH---HHHHHHHHHHHHHHT----TCCSSSEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHH---HHHHHHHHHHHHHHC----CCCcCCEEEE
Confidence 4677777655433322112 1244455667778999999999998643 222333333322222 3788899999
Q ss_pred cCeeeccccChhHHHHHHhc
Q 012674 388 NDVQYRGKLERTAVLRAICA 407 (458)
Q Consensus 388 N~~~yrG~L~~~~v~~aICa 407 (458)
||+.|.|.-..+.+.++|-.
T Consensus 180 ~g~~~~G~~~~~~l~~~l~~ 199 (202)
T 3fz5_A 180 DDEPFWGWDRMEMMAEWIRT 199 (202)
T ss_dssp TTEEEESGGGHHHHHHHHHT
T ss_pred CCEEEecCCCHHHHHHHHhc
Confidence 99999998777777777643
No 16
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=92.91 E-value=0.11 Score=46.69 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=54.5
Q ss_pred hhhhHHHHHHhhcCcchh-hhhHHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEE
Q 012674 309 VWWDYVTDFHIRCSMKEK-RYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~-~~~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~I 387 (458)
++|.|....-..=..... ..+.+=-.++.+.+|+|.+++++|+.+.. ....+++..+.-.. .+|.-.||++|
T Consensus 86 ~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~---~~~~v~~~~~~a~~----~gv~gtPt~~v 158 (192)
T 3h93_A 86 VEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFA---IKGQMEKAKKLAMA----YQVTGVPTMVV 158 (192)
T ss_dssp CCHHHHHHHHHHHHTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHH---HHHHHHHHHHHHHH----HTCCSSSEEEE
T ss_pred CHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHH---HHHHHHHHHHHHHH----hCCCCCCeEEE
Confidence 477777664332111111 12355567788899999999999997643 22234433332222 23778899999
Q ss_pred cCeeec---cccChhHHHHH
Q 012674 388 NDVQYR---GKLERTAVLRA 404 (458)
Q Consensus 388 N~~~yr---G~L~~~~v~~a 404 (458)
||+.+- |-.+.+...+.
T Consensus 159 ng~~~~~~~G~~~~e~l~~~ 178 (192)
T 3h93_A 159 NGKYRFDIGSAGGPEETLKL 178 (192)
T ss_dssp TTTEEEEHHHHTSHHHHHHH
T ss_pred CCEEEecccccCCHHHHHHH
Confidence 999875 77666654443
No 17
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=92.86 E-value=2.3 Score=37.06 Aligned_cols=69 Identities=7% Similarity=0.095 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeee---ccccChhHHHHHH
Q 012674 330 KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQY---RGKLERTAVLRAI 405 (458)
Q Consensus 330 ~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~y---rG~L~~~~v~~aI 405 (458)
..=..++.+.+|+|.+++++|+.+.. ....+++..+.-.. .+|.--||++|||+-. +|-.+.+.+++.|
T Consensus 106 ~~~l~~~a~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~a~~----~gv~gTPtfiINGky~v~~~~~~s~e~~~~~i 177 (184)
T 4dvc_A 106 EQELRQIFLDEGIDAAKFDAAYNGFA---VDSMVHRFDKQFQD----SGLTGVPAVVVNNRYLVQGQSAKSLDEYFDLV 177 (184)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTSHH---HHHHHHHHHHHHHH----HTCCSSSEEEETTTEEECGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCHH---HHHHHHHHHHHHHH----cCCCcCCEEEECCEEeeCCcCCCCHHHHHHHH
Confidence 34456788899999999999998643 23334433222111 2367789999999732 3333445555443
No 18
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=92.60 E-value=0.089 Score=47.08 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=42.9
Q ss_pred HHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeee-ccccChhHHHHHH
Q 012674 333 AEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQY-RGKLERTAVLRAI 405 (458)
Q Consensus 333 s~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~y-rG~L~~~~v~~aI 405 (458)
-.++.+.+|+|.+++++|+.+.. ....+++..+.-.. .+|.-.||++|||+.+ .|. +.+.+.++|
T Consensus 114 l~~~a~~~Gld~~~~~~~~~~~~---~~~~v~~~~~~a~~----~gv~gtPt~ving~~~~~g~-~~~~l~~~i 179 (193)
T 2rem_A 114 LAVFYAGYGVQPDRFVATFNGPE---VEKRFQAARAYALK----VRPVGTPTIVVNGRYMVTGH-DFEDTLRIT 179 (193)
T ss_dssp HHHHHHTTTCCHHHHHHHHTSHH---HHHHHHHHHHHHHH----HCCSSSSEEEETTTEEECCS-SHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHhChH---HHHHHHHHHHHHHH----hCCCCCCeEEECCEEEecCC-CHHHHHHHH
Confidence 45677889999999999997643 22344443332211 2377889999999976 777 665554443
No 19
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*
Probab=92.59 E-value=0.087 Score=48.12 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=56.0
Q ss_pred hhhhHHHHHHhhcCcchhhhh-HHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEE
Q 012674 309 VWWDYVTDFHIRCSMKEKRYS-KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~~~-~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~I 387 (458)
+.|+|....-..-.......+ .+=-.++.+.+|+|.+++++|+.++. ....++++.+.-... +|.-.||++|
T Consensus 101 ~~~~~~~~lf~a~~~~~~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~a~~~----Gv~G~Ptfvi 173 (203)
T 2imf_A 101 QAAAYVNVVFNAVWGEGIAPDLESLPALVSEKLGWDRSAFEHFLSSNA---ATERYDEQTHAAIER----KVFGVPTMFL 173 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTCTTHHHHHHHHHTCCHHHHHHHHHSHH---HHHHHHHHHHHHHHT----TCCSSSEEEE
T ss_pred hHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHH---HHHHHHHHHHHHHHC----CCCcCCEEEE
Confidence 467777664433211111111 22234567778999999999998643 222344333322222 3778899999
Q ss_pred cCeeeccccChhHHHHHHhc
Q 012674 388 NDVQYRGKLERTAVLRAICA 407 (458)
Q Consensus 388 N~~~yrG~L~~~~v~~aICa 407 (458)
||+.+.|.-..+.+.++|-.
T Consensus 174 ~g~~~~G~~~~~~l~~~l~~ 193 (203)
T 2imf_A 174 GDEMWWGNDRLFMLESAMGR 193 (203)
T ss_dssp TTEEEESGGGHHHHHHHHHH
T ss_pred CCEEEECCCCHHHHHHHHhc
Confidence 99999999777666666543
No 20
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=92.26 E-value=2.3 Score=37.07 Aligned_cols=28 Identities=14% Similarity=0.393 Sum_probs=23.1
Q ss_pred ceEEeeEEEEcCeeeccccChhHHHHHH
Q 012674 378 DVTILPTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 378 ~v~~lPtl~IN~~~yrG~L~~~~v~~aI 405 (458)
+|.-.||++|||+.+.|..+.+.+.++|
T Consensus 146 gv~gtPt~vvng~~~~G~~~~~~l~~~i 173 (175)
T 1z6m_A 146 HIQFVPTIIIGEYIFDESVTEEELRGYI 173 (175)
T ss_dssp TCCSSCEEEETTEEECTTCCHHHHHHHH
T ss_pred CCCCcCeEEECCEEccCCCCHHHHHHHh
Confidence 3777899999999999998877776654
No 21
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=91.20 E-value=0.17 Score=45.42 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=41.2
Q ss_pred HHHHHHHc-CCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCee-eccccChhH
Q 012674 333 AEEVMKSL-DLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQ-YRGKLERTA 400 (458)
Q Consensus 333 s~~v~k~l-~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~-yrG~L~~~~ 400 (458)
-.++++.+ |+|.+++++|+.+.. ....+++..+.-.. .+|.-.||++|||+. ..|..+.+.
T Consensus 108 l~~~a~~~~Gld~~~~~~~~~~~~---~~~~v~~~~~~a~~----~gv~gtPt~ving~~~~~g~~~~~~ 170 (195)
T 2znm_A 108 AGKWALSQKGFDGKKLMRAYDSPE---AAAAALKMQKLTEQ----YRIDSTPTVIVGGKYRVIFNNGFDG 170 (195)
T ss_dssp HHHHHHTCSSSCHHHHHHHHTSHH---HHHHHHHHHHHHHH----TTCCSSSEEEETTTEEECCCSHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHhcCHH---HHHHHHHHHHHHHH----cCCCCCCeEEECCEEEEcCCCCHHH
Confidence 45677788 999999999997643 23344444332222 237788999999985 778755544
No 22
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=90.51 E-value=0.26 Score=46.70 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=62.3
Q ss_pred hhhhHHHHHHhhcCcchhh-hh-HHHHHHHHHHcCCCHHhhccccCC-CcccccchhHHHHHHHHhcCCCCCceEEeeEE
Q 012674 309 VWWDYVTDFHIRCSMKEKR-YS-KECAEEVMKSLDLPIEKIRKCIGD-PEADVENEVLKTEQEFQVGRGSRGDVTILPTL 385 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~-~~-~~Cs~~v~k~l~id~~~i~~C~~d-s~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl 385 (458)
+.|.|....-..-...... .. .+=-.++.+.+|+|.+++++|+.+ .. ....++++.+.-... +|.-.|++
T Consensus 115 ~~~~~~~alf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~~~~l~s~~~---~~~~v~~~~~~a~~~----Gv~GvPtf 187 (239)
T 3gl5_A 115 RHEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPAA---YADEVRADEREAAQL----GATGVPFF 187 (239)
T ss_dssp CHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHHHHHHHCTTT---THHHHHHHHHHHHHT----TCCSSSEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHcCcHh---HHHHHHHHHHHHHHC----CCCeeCeE
Confidence 4677777654433222112 22 344566778899999999999986 43 223344433322222 37889999
Q ss_pred EEcCe-eeccccChhHHHHHHhccCcCC
Q 012674 386 VINDV-QYRGKLERTAVLRAICAGFKEA 412 (458)
Q Consensus 386 ~IN~~-~yrG~L~~~~v~~aICagf~~~ 412 (458)
+|||+ .+.|..+.+...++|=....+.
T Consensus 188 vv~g~~~v~Ga~~~e~~~~~i~~~~~~~ 215 (239)
T 3gl5_A 188 VLDRAYGVSGAQPAEVFTQALTQAWGER 215 (239)
T ss_dssp EETTTEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EECCcEeecCCCCHHHHHHHHHHHHhhc
Confidence 99997 6899888888777776666554
No 23
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=89.67 E-value=0.36 Score=43.29 Aligned_cols=58 Identities=9% Similarity=0.093 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeecc
Q 012674 330 KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRG 394 (458)
Q Consensus 330 ~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG 394 (458)
.+=-.++.+++|+|.+++++|+.+.. ....+++..+.-.. .+|.-.||++|||+.+.|
T Consensus 107 ~~~l~~~a~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~a~~----~gv~gtPt~ving~~~~~ 164 (195)
T 3hd5_A 107 KKAMGEWAASQGVDRAKFDSVFDSFS---VQTQVQRASQLAEA----AHIDGTPAFAVGGRYMTS 164 (195)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCHH---HHHHHHHHHHHHHH----TTCCSSSEEEETTTEEEC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHcCHH---HHHHHHHHHHHHHH----hCCCcCceEEECCEEEeC
Confidence 44456778899999999999998643 22334443332222 237788999999998865
No 24
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=88.71 E-value=0.7 Score=41.93 Aligned_cols=90 Identities=9% Similarity=0.108 Sum_probs=54.0
Q ss_pred hhhhHHHHHHhhcCcchhhhh-HHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEE
Q 012674 309 VWWDYVTDFHIRCSMKEKRYS-KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~~~-~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~I 387 (458)
+.|+|.......-.......+ .+=-.++.+.+|+|.+++++|+.+.. ....+++..+.-.. .+|.-.||++|
T Consensus 110 ~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~---~~~~v~~~~~~a~~----~gv~g~Pt~~i 182 (216)
T 2in3_A 110 KVFPFFAAIQRAFYVGQEDVAQLAILKKLAVDLGIPESRFTPVFQSDE---AKQRTLAGFQRVAQ----WGISGFPALVV 182 (216)
T ss_dssp GHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHTTCCHHHHHHHHHSHH---HHHHHHHHHHHHHH----TTCCSSSEEEE
T ss_pred hHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcchH---HHHHHHHHHHHHHH----cCCcccceEEE
Confidence 577887764432221111221 22335667789999999999997643 12233333222212 23788899998
Q ss_pred --cCee---eccccChhHHHHHH
Q 012674 388 --NDVQ---YRGKLERTAVLRAI 405 (458)
Q Consensus 388 --N~~~---yrG~L~~~~v~~aI 405 (458)
||+. +.|-.+.+.+.++|
T Consensus 183 ~~~G~~~~~~~G~~~~~~l~~~l 205 (216)
T 2in3_A 183 ESGTDRYLITTGYRPIEALRQLL 205 (216)
T ss_dssp EETTEEEEEESSCCCHHHHHHHH
T ss_pred EECCEEEEeccCCCCHHHHHHHH
Confidence 9985 88887777666555
No 25
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=87.95 E-value=0.23 Score=44.30 Aligned_cols=90 Identities=11% Similarity=0.111 Sum_probs=49.7
Q ss_pred hhhhHHHHHHhhcCcchhhh-----hHHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEee
Q 012674 309 VWWDYVTDFHIRCSMKEKRY-----SKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILP 383 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~~-----~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lP 383 (458)
++|+|+..+...-....... ..+....+.+++|+|.+++++|+.+.. ....+++..+.-. +.+|.-.|
T Consensus 92 ~~~~~~~~l~~a~~~~~~~~~~~~~l~~~~~~~a~~~Gld~~~~~~~~~~~~---~~~~v~~~~~~a~----~~gv~gtP 164 (195)
T 3c7m_A 92 QFKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAGMSQADFEAALKEPA---VQETLEKWKASYD----VAKIQGVP 164 (195)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTTTTCHHHHHHHHHHHHTCCHHHHHHHHTSHH---HHHHHHHGGGHHH----HHHHHCSS
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhHHHHcCCCHHHHHHHHcChH---HHHHHHHHHHHHH----HcCCCccC
Confidence 45777776543322111111 133433337889999999999997642 1122332221111 12367789
Q ss_pred EEEEcCeee-c--cccChhHHHHHH
Q 012674 384 TLVINDVQY-R--GKLERTAVLRAI 405 (458)
Q Consensus 384 tl~IN~~~y-r--G~L~~~~v~~aI 405 (458)
|++|||+.. . |-.+.+.+.++|
T Consensus 165 t~~ing~~~~~~~g~~~~~~l~~~i 189 (195)
T 3c7m_A 165 AYVVNGKYLIYTKSIKSIDAMADLI 189 (195)
T ss_dssp EEEETTTEEECGGGCCCHHHHHHHH
T ss_pred EEEECCEEEeccCCCCCHHHHHHHH
Confidence 999999853 3 555666555444
No 26
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=87.43 E-value=0.75 Score=49.71 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=49.9
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCCccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHc
Q 012674 99 PRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (458)
Q Consensus 99 ~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~l~tM~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~ 178 (458)
..++|+|.+| .|..|..+++.+||.++|++++..+. .....+|+++|+.++|..|+.++..
T Consensus 280 v~gkivl~~~---~~~~~~~~~~~~Ga~gvi~~~~~~~~----------------~~~~~lP~~~v~~~~g~~i~~~~~~ 340 (621)
T 3vta_A 280 LKGKIVVCEA---SFGPHEFFKSLDGAAGVLMTSNTRDY----------------ADSYPLPSSVLDPNDLLATLRYIYS 340 (621)
T ss_dssp TTTSEEECSS---CCCHHHHHHHHTTCSEEEEECSCCSS----------------CCCCSSSEEEECHHHHHHHHHHHHH
T ss_pred ccceEEEEec---CCChhHHhhhhcceeEEEEEecCCCc----------------ccccccceEEECHHHHHHHHHHHhc
Confidence 4599999876 57789999999999999999875321 1135699999999999999999875
Q ss_pred C
Q 012674 179 G 179 (458)
Q Consensus 179 g 179 (458)
.
T Consensus 341 ~ 341 (621)
T 3vta_A 341 I 341 (621)
T ss_dssp H
T ss_pred c
Confidence 3
No 27
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=85.81 E-value=1.3 Score=41.04 Aligned_cols=95 Identities=8% Similarity=0.029 Sum_probs=57.0
Q ss_pred hhhhHHHHHHhhcCcchhhhh-HHHHHHHHHHcCCC---HHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeE
Q 012674 309 VWWDYVTDFHIRCSMKEKRYS-KECAEEVMKSLDLP---IEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPT 384 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~~~-~~Cs~~v~k~l~id---~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPt 384 (458)
++|+|....-..-.......+ .+=-.++.+.+|+| .+++.+|+.+.. ....++++.+.-.. .+|.-.||
T Consensus 113 ~~~~~~~alf~a~~~~~~~i~~~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~---~~~~v~~~~~~a~~----~gv~G~Pt 185 (226)
T 1r4w_A 113 MLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKISTEL---VKSKLRETTGAACK----YGAFGLPT 185 (226)
T ss_dssp GHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHH---HHHHHHHHHHHHHH----TTCCSSCE
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCchhHHHHHHHcCCHH---HHHHHHHHHHHHHH----CCCCCCCE
Confidence 467887764332211111221 34455677889995 557777776532 22334433332222 23788899
Q ss_pred EEEc----CeeeccccChhHHHHHHhccCc
Q 012674 385 LVIN----DVQYRGKLERTAVLRAICAGFK 410 (458)
Q Consensus 385 l~IN----~~~yrG~L~~~~v~~aICagf~ 410 (458)
++|| +..+.|.-..+.+.++|=....
T Consensus 186 fvv~~~g~~~~~~G~~~~~~l~~~l~~~~~ 215 (226)
T 1r4w_A 186 TVAHVDGKTYMLFGSDRMELLAYLLGEKWM 215 (226)
T ss_dssp EEEEETTEEEEEESTTCHHHHHHHHTCCCC
T ss_pred EEEeCCCCcCceeCCCcHHHHHHHhcCccc
Confidence 9999 8999998777777788865554
No 28
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=83.97 E-value=1.2 Score=40.15 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=37.6
Q ss_pred HHHHHHHHHHc-CCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeee
Q 012674 330 KECAEEVMKSL-DLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQY 392 (458)
Q Consensus 330 ~~Cs~~v~k~l-~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~y 392 (458)
.+=-.++.+++ |+|.+++++|+.+.. ....+++..+.-.. .+|.-.||++|||+..
T Consensus 100 ~~~l~~~a~~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~a~~----~gv~GtPt~~vng~~~ 156 (189)
T 3l9v_A 100 PDDVRRVFMSATGISRGEYDRSIKSPA---VNDMVALQERLFKE----YGVRGTPSVYVRGRYH 156 (189)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHTTSHH---HHHHHHHHHHHHHH----TTCCSSSEEEETTTEE
T ss_pred HHHHHHHHHHccCCCHHHHHHHHhhHH---HHHHHHHHHHHHHH----hCCCccCEEEECCEEE
Confidence 44456778888 999999999998653 22344444332222 2377789999999743
No 29
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=82.40 E-value=1.6 Score=39.58 Aligned_cols=89 Identities=12% Similarity=0.202 Sum_probs=51.0
Q ss_pred hhhHHHHHHhhcCcchhh-hhHHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEc
Q 012674 310 WWDYVTDFHIRCSMKEKR-YSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIN 388 (458)
Q Consensus 310 WW~Y~~~F~~~C~~~~~~-~~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN 388 (458)
.|.|.......-...... ...+=-.++.+.+|+|.+++++|+.+.. ....+++..+.-... +|.-.||++||
T Consensus 104 ~~~~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~a~~~----gv~g~Pt~~v~ 176 (208)
T 3kzq_A 104 YEQMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDGTL---LEGVFQDQLSLAKSL----GVNSYPSLVLQ 176 (208)
T ss_dssp HHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHTSHH---HHHHHHHHHHHHHHT----TCCSSSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHhChH---HHHHHHHHHHHHHHc----CCCcccEEEEE
Confidence 477777654432222111 2245556788889999999999998643 223344333322222 37788999997
Q ss_pred Ce-ee----ccccChhHHHHHH
Q 012674 389 DV-QY----RGKLERTAVLRAI 405 (458)
Q Consensus 389 ~~-~y----rG~L~~~~v~~aI 405 (458)
+. +| .|--+.+.++++|
T Consensus 177 ~~~~~~~~~~g~~~~e~~~~~i 198 (208)
T 3kzq_A 177 INDAYFPIEVDYLSTEPTLKLI 198 (208)
T ss_dssp ETTEEEEECCCSSCSHHHHHHH
T ss_pred ECCEEEEeeCCCCCHHHHHHHH
Confidence 42 22 3444445555444
No 30
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=81.35 E-value=0.95 Score=41.09 Aligned_cols=55 Identities=7% Similarity=0.044 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeee
Q 012674 331 ECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQY 392 (458)
Q Consensus 331 ~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~y 392 (458)
+=-.++.+++|+|.+++++|+.+.. ....+++..+.-.. .+|.-.||++|||+..
T Consensus 108 ~~L~~~a~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~a~~----~gv~gtPtfvvnG~~~ 162 (191)
T 3l9s_A 108 ADIRKVFVDAGVKGEDYDAAWNSFV---VKSLVAQQEKAAAD----LQLQGVPAMFVNGKYQ 162 (191)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSHH---HHHHHHHHHHHHHH----TTCCSSSEEEETTTEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHhCHH---HHHHHHHHHHHHHH----hCCcccCEEEECCEEE
Confidence 3356788889999999999998643 23344444332222 2377889999999854
No 31
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=80.83 E-value=0.8 Score=41.27 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCC-CHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCee-e--ccccChhHHHHHH
Q 012674 330 KECAEEVMKSLDL-PIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQ-Y--RGKLERTAVLRAI 405 (458)
Q Consensus 330 ~~Cs~~v~k~l~i-d~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~-y--rG~L~~~~v~~aI 405 (458)
.+=-.++.+++|+ |.+++++++.+ . ... .+++....-.. .+|.-.||++|||+. . +|-.+.+...++|
T Consensus 108 ~~~L~~~a~~~Gl~d~~~~~~~~~~-~--~~~-~v~~~~~~a~~----~gv~GtPtfvvng~~~v~~~Ga~~~e~~~~~i 179 (185)
T 3feu_A 108 QEAYSKAFTSRGLVSPYDFNEEQRD-T--LIK-KVDNAKMLSEK----SGISSVPTFVVNGKYNVLIGGHDDPKQIADTI 179 (185)
T ss_dssp HHHHHHHHHTTTCCCGGGCCHHHHH-H--HHH-HHHHHHHHHHH----HTCCSSSEEEETTTEEECGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH-H--HHH-HHHHHHHHHHH----cCCCccCEEEECCEEEEecCCCCCHHHHHHHH
Confidence 4445678888998 99999999874 2 222 33333222112 237778999999984 3 7887777665554
No 32
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=72.47 E-value=2.5 Score=38.60 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=35.5
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeec
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYR 393 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yr 393 (458)
.++.+.+|+|.+++++|+.+.. ....+++....-...| |.-.|+++|||+.+.
T Consensus 10 ~~~a~~~Gld~~~~~~~l~s~~---~~~~v~~~~~~a~~~g----i~gvP~fvingk~~~ 62 (197)
T 1un2_A 10 RDVFINAGIKGEEYDAAWNSFV---VKSLVAQQEKAAADVQ----LRGVPAMFVNGKYQL 62 (197)
T ss_dssp HHHHHHHTCCHHHHHHHHTSHH---HHHHHHHHHHHHHHTT----CCSSSEEEETTTEEE
T ss_pred HHHHHHcCCCHHHHHHHHhCHH---HHHHHHHHHHHHHHcC----CCcCCEEEEcceEec
Confidence 4567788999999999997643 2334444433222233 566899999998664
No 33
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=72.39 E-value=4.2 Score=37.97 Aligned_cols=98 Identities=9% Similarity=0.038 Sum_probs=56.7
Q ss_pred hhhhHHHHHHhhcCcchhh-hhHHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEE
Q 012674 309 VWWDYVTDFHIRCSMKEKR-YSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~-~~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~I 387 (458)
+.+++...+-..-...... -..+=-.++.+++|+|.+++++-......+.....|+++.+.-... +|+-.|+++|
T Consensus 113 ~~~~~~~al~~A~~~~g~di~d~~~L~~~a~~~GLd~~~~~~~l~~~~s~~~~~~l~~~~~~a~~~----Gv~GvPtfvv 188 (234)
T 3rpp_A 113 MLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRY----GAFGLPITVA 188 (234)
T ss_dssp GHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHT----TCSSSCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHccCHHHHHHHHHHHHHHHHc----CCCCCCEEEE
Confidence 4556665543322211112 2245567788889999977766664322222333444433322223 3788999999
Q ss_pred c--C--eeeccccChhHHHHHHhccCc
Q 012674 388 N--D--VQYRGKLERTAVLRAICAGFK 410 (458)
Q Consensus 388 N--~--~~yrG~L~~~~v~~aICagf~ 410 (458)
| | ..|.|.-.-+.+..+|=..+.
T Consensus 189 ~~~g~~~~f~G~drl~~l~~~L~~~~~ 215 (234)
T 3rpp_A 189 HVDGQTHMLFGSDRMELLAHLLGEKWM 215 (234)
T ss_dssp EETTEEEEEESSSCHHHHHHHHTCCCC
T ss_pred eCCCCcCceeCccCHHHHHHHhccccC
Confidence 6 6 679998666777777755554
No 34
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=66.71 E-value=3.1 Score=33.87 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=25.3
Q ss_pred eEEeeEEEEcCeeeccccChhHHHHHHhccC
Q 012674 379 VTILPTLVINDVQYRGKLERTAVLRAICAGF 409 (458)
Q Consensus 379 v~~lPtl~IN~~~yrG~L~~~~v~~aICagf 409 (458)
|..+||++|||+.|.|..+.+++.+.+ ++
T Consensus 64 V~~~PT~~i~G~~~~G~~~~~~l~~~~--~~ 92 (106)
T 3kp8_A 64 ITSYPTWIINGRTYTGVRSLEALAVAS--GY 92 (106)
T ss_dssp CCSSSEEEETTEEEESCCCHHHHHHHH--TC
T ss_pred CeEeCEEEECCEEecCCCCHHHHHHHh--CC
Confidence 778999999999999999998887765 55
No 35
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=64.08 E-value=5.7 Score=35.67 Aligned_cols=65 Identities=14% Similarity=0.244 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeec---cccChhHHHHHH
Q 012674 331 ECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYR---GKLERTAVLRAI 405 (458)
Q Consensus 331 ~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yr---G~L~~~~v~~aI 405 (458)
+=..++.+.+|+|.+++ +.++. ...-+++..+.-.. .+|.--||++|||+.+. |..+.+...+.|
T Consensus 114 ~~l~~~a~~~Gld~~~~---l~~~~---~~~~v~~~~~~a~~----~GV~gtPtf~ing~~~~~~s~~~~~e~w~~~l 181 (182)
T 3gn3_A 114 DIIARIERYSGLALAEA---FANPE---LEHAVKWHTKYARQ----NGIHVSPTFMINGLVQPGMSSGDPVSKWVSDI 181 (182)
T ss_dssp HHHHHHHHHHTCCCHHH---HHCGG---GHHHHHHHHHHHHH----HTCCSSSEEEETTEECTTCCTTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHH---hcChH---HHHHHHHHHHHHHH----CCCCccCEEEECCEEccCCCCCCCHHHHHHHh
Confidence 33456777789998887 43321 22233332221111 23777899999999985 456666555443
No 36
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=59.91 E-value=5.1 Score=29.76 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=22.2
Q ss_pred ceEEeeEEEEcCee-eccccChhHHHHHH
Q 012674 378 DVTILPTLVINDVQ-YRGKLERTAVLRAI 405 (458)
Q Consensus 378 ~v~~lPtl~IN~~~-yrG~L~~~~v~~aI 405 (458)
+|..+||++|||+. +.|..+.+.+.+.|
T Consensus 53 ~v~~~Pt~~~~G~~~~~G~~~~~~l~~~l 81 (85)
T 1fo5_A 53 GIMAVPTIVINGDVEFIGAPTKEALVEAI 81 (85)
T ss_dssp TTCCSSEEEETTEEECCSSSSSHHHHHHH
T ss_pred CCcccCEEEECCEEeeecCCCHHHHHHHH
Confidence 46788999999986 88988877776654
No 37
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=56.14 E-value=5.5 Score=29.58 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=22.0
Q ss_pred ceEEeeEEEEcCee-eccccChhHHHHHH
Q 012674 378 DVTILPTLVINDVQ-YRGKLERTAVLRAI 405 (458)
Q Consensus 378 ~v~~lPtl~IN~~~-yrG~L~~~~v~~aI 405 (458)
+|..+||++|||+. +.|..+.+.+.+.|
T Consensus 52 ~v~~~Pt~~~~G~~~~~G~~~~~~l~~~l 80 (85)
T 1nho_A 52 GLMAVPAIAINGVVRFVGAPSREELFEAI 80 (85)
T ss_dssp CSSCSSEEEETTTEEEECSSCCHHHHHHH
T ss_pred CceeeCEEEECCEEEEccCCCHHHHHHHH
Confidence 36789999999986 88988877766554
No 38
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=48.67 E-value=6.9 Score=28.61 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=21.3
Q ss_pred eEEeeEEEEcCee-ecccc-ChhHHHHHH
Q 012674 379 VTILPTLVINDVQ-YRGKL-ERTAVLRAI 405 (458)
Q Consensus 379 v~~lPtl~IN~~~-yrG~L-~~~~v~~aI 405 (458)
|..+||++|||+. ++|.. +.+.+.+.|
T Consensus 48 v~~~Pt~~~~G~~~~~G~~~~~~~l~~~l 76 (77)
T 1ilo_A 48 LTALPGLAVDGELKIMGRVASKEEIKKIL 76 (77)
T ss_dssp CSSSSCEEETTEEEECSSCCCHHHHHHHC
T ss_pred CCcCCEEEECCEEEEcCCCCCHHHHHHHh
Confidence 5678999999986 78887 777776654
No 39
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=41.51 E-value=16 Score=31.68 Aligned_cols=34 Identities=24% Similarity=0.163 Sum_probs=27.2
Q ss_pred ceEEeeEEEE-cCeeeccccChhHHHHHHhccCcC
Q 012674 378 DVTILPTLVI-NDVQYRGKLERTAVLRAICAGFKE 411 (458)
Q Consensus 378 ~v~~lPtl~I-N~~~yrG~L~~~~v~~aICagf~~ 411 (458)
+|.-.||++| ||+.+.|-.+.+.+.++|=..-++
T Consensus 106 gI~gtPt~vi~nG~~i~G~~~~~~l~~~i~~~~~~ 140 (147)
T 3gv1_A 106 GFNGTPTLVFPNGRTQSGYSPMPQLEEIIRKNQQE 140 (147)
T ss_dssp TCCSSCEEECTTSCEEESCCCTTHHHHHHHHTSCC
T ss_pred CCCccCEEEEECCEEeeCCCCHHHHHHHHHHHHHh
Confidence 3777899999 899999999988888877554443
No 40
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=38.77 E-value=35 Score=25.90 Aligned_cols=62 Identities=18% Similarity=0.125 Sum_probs=35.7
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHHHH
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aI 405 (458)
..+++.+|++.+.++--..+ ..+++-+..++....+ +...|+|+|||...-| .+.+.+.++|
T Consensus 29 ~~~L~~~gi~~~~~~v~~~~---~~~~~~~~~~l~~~~g------~~~vP~l~~~g~~i~G-~~~~~l~~~l 90 (92)
T 3ic4_A 29 LEFLKREGVDFEVIWIDKLE---GEERKKVIEKVHSISG------SYSVPVVVKGDKHVLG-YNEEKLKELI 90 (92)
T ss_dssp HHHHHHHTCCCEEEEGGGCC---HHHHHHHHHHHHHHHS------SSCSCEEEETTEEEES-CCHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEeeeCC---ccchHHHHHHHHHhcC------CCCcCEEEECCEEEeC-CCHHHHHHHh
Confidence 56788888876544321111 1122222344444443 3467999999987655 5877776654
No 41
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=37.33 E-value=14 Score=23.48 Aligned_cols=15 Identities=53% Similarity=1.504 Sum_probs=11.6
Q ss_pred cccccCCcccCCCCCC
Q 012674 261 SQCINHGRYCAPDPEQ 276 (458)
Q Consensus 261 ~~Ci~~GrYCa~dpd~ 276 (458)
+.|+-+|.+| |||+-
T Consensus 1 secvenggfc-pdpek 15 (32)
T 4b2v_A 1 SECVENGGFC-PDPEK 15 (32)
T ss_dssp CCCCCTTCBC-CCTTT
T ss_pred CchhhcCCcC-CChHH
Confidence 3588999999 67764
No 42
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=31.74 E-value=30 Score=27.33 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=34.4
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHHHH
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aI 405 (458)
..+++.+|++.+.++--..+. .+.+-+-+++....+ +.-+|+|+||+.++-|-.+.+.+.++|
T Consensus 39 k~~L~~~~i~y~~vdI~~~~~---~~~~~~~~~l~~~~g------~~~vP~l~i~~~~~igg~~~~~l~~~L 101 (103)
T 3nzn_A 39 KKLLTDLGVDFDYVYVDRLEG---KEEEEAVEEVRRFNP------SVSFPTTIINDEKAIVGFKEKEIRESL 101 (103)
T ss_dssp HHHHHHHTBCEEEEEGGGCCH---HHHHHHHHHHHHHCT------TCCSCEEEETTTEEEESCCHHHHHHHT
T ss_pred HHHHHHcCCCcEEEEeeccCc---ccHHHHHHHHHHhCC------CCccCEEEECCCEEEEcCCHHHHHHHh
Confidence 568888888755443211110 111122222222222 357899999994455667888776654
No 43
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=31.55 E-value=35 Score=27.54 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=30.9
Q ss_pred HHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccc
Q 012674 333 AEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGK 395 (458)
Q Consensus 333 s~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~ 395 (458)
+.++++.+|++.+.++= ..++-+.+++....+. .-+|.|+|||+..-|-
T Consensus 39 ak~~L~~~gi~~~~~dI--------~~~~~~~~~l~~~~g~------~tvP~ifi~g~~iGG~ 87 (109)
T 3ipz_A 39 VVQILKNLNVPFEDVNI--------LENEMLRQGLKEYSNW------PTFPQLYIGGEFFGGC 87 (109)
T ss_dssp HHHHHHHTTCCCEEEEG--------GGCHHHHHHHHHHHTC------SSSCEEEETTEEEECH
T ss_pred HHHHHHHcCCCcEEEEC--------CCCHHHHHHHHHHHCC------CCCCeEEECCEEEeCH
Confidence 36788899988655431 1234455555544433 4579999999877553
No 44
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=31.49 E-value=21 Score=26.43 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=18.4
Q ss_pred CceEEEEeHHHHHHHHHHHH
Q 012674 158 GIPSALIDRAFGLSLKEALK 177 (458)
Q Consensus 158 ~IPsv~Is~~dG~~L~~~l~ 177 (458)
-||++-|+++|-++|+++++
T Consensus 52 iipsinisksdveairkamk 71 (72)
T 4f87_A 52 IIPSINISKSDVEAIRKAMK 71 (72)
T ss_dssp TSCEEECCGGGHHHHHHHHC
T ss_pred hCccccccHhHHHHHHHHhc
Confidence 49999999999999999875
No 45
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=30.15 E-value=23 Score=34.53 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=24.6
Q ss_pred ceEEeeEEEEcCeeeccccChhHHHHHH
Q 012674 378 DVTILPTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 378 ~v~~lPtl~IN~~~yrG~L~~~~v~~aI 405 (458)
+|.-+||+++||+.|.|..+.+++.+.+
T Consensus 248 gI~~vPT~~i~G~~~~G~~~~~~L~~~l 275 (291)
T 3kp9_A 248 GITSYPTWIINGRTYTGVRSLEALAVAS 275 (291)
T ss_dssp TCCSTTEEEETTEEEESCCCHHHHHHHT
T ss_pred CCcccCeEEECCEEecCCCCHHHHHHHH
Confidence 3678899999999999999999888765
No 46
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=28.02 E-value=44 Score=25.40 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEE-cCeeecc
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI-NDVQYRG 394 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~I-N~~~yrG 394 (458)
.++++.+|++.+.++==.. .. ..++-+.+++....+...+.. ..+|.|+| ||..+-|
T Consensus 21 k~~L~~~gi~y~~idI~~~--~~-~~~~~~~~~l~~~~g~~~~~~-~tvP~v~i~~g~~igG 78 (87)
T 1aba_A 21 KRLLTVKKQPFEFINIMPE--KG-VFDDEKIAELLTKLGRDTQIG-LTMPQVFAPDGSHIGG 78 (87)
T ss_dssp HHHHHHTTCCEEEEESCSB--TT-BCCHHHHHHHHHHHTCSCCTT-CCSCEEECTTSCEEES
T ss_pred HHHHHHcCCCEEEEEeecc--cc-ccCHHHHHHHHHHhCCCCCCC-CccCEEEEECCEEEeC
Confidence 5688899988665532100 00 134455556665554320000 16899999 9887655
No 47
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=27.79 E-value=43 Score=26.59 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=29.8
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccc
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGK 395 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~ 395 (458)
.++++.+|++.+.|+= + .++-+.+++.... . ++..+|+|+|||+..-|-
T Consensus 33 k~~L~~~~i~y~~idI-------~-~~~~~~~~l~~~~-~----g~~~vP~ifi~g~~igG~ 81 (99)
T 3qmx_A 33 LALLKRKGVEFQEYCI-------D-GDNEAREAMAARA-N----GKRSLPQIFIDDQHIGGC 81 (99)
T ss_dssp HHHHHHHTCCCEEEEC-------T-TCHHHHHHHHHHT-T----TCCCSCEEEETTEEEESH
T ss_pred HHHHHHCCCCCEEEEc-------C-CCHHHHHHHHHHh-C----CCCCCCEEEECCEEEeCh
Confidence 5688888887655431 1 2334445554443 0 245789999999877543
No 48
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Probab=27.75 E-value=13 Score=28.38 Aligned_cols=15 Identities=40% Similarity=0.767 Sum_probs=12.3
Q ss_pred CCchhhhcCCCceec
Q 012674 423 LETNECLERNGGCWQ 437 (458)
Q Consensus 423 ~~~~~c~~~~~~c~~ 437 (458)
++.|||..+||||.+
T Consensus 3 ~d~~eC~~~nggC~h 17 (69)
T 1kli_L 3 DDQLICVNENGGCEQ 17 (69)
T ss_dssp SCCCCTTSGGGGCSS
T ss_pred cccccccCCCCCcCC
Confidence 467899999999963
No 49
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=27.71 E-value=46 Score=25.75 Aligned_cols=50 Identities=10% Similarity=0.190 Sum_probs=30.4
Q ss_pred HHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeecc
Q 012674 333 AEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRG 394 (458)
Q Consensus 333 s~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG 394 (458)
+.++++..|++.+.++= + .++-+.+++....+.+ ...+|.|+|||...-|
T Consensus 24 ak~~L~~~~i~~~~~di-------~-~~~~~~~~l~~~~g~~----~~~vP~ifi~g~~igG 73 (93)
T 1t1v_A 24 VTRILDGKRIQYQLVDI-------S-QDNALRDEMRTLAGNP----KATPPQIVNGNHYCGD 73 (93)
T ss_dssp HHHHHHHTTCCCEEEET-------T-SCHHHHHHHHHHTTCT----TCCSCEEEETTEEEEE
T ss_pred HHHHHHHCCCceEEEEC-------C-CCHHHHHHHHHHhCCC----CCCCCEEEECCEEEeC
Confidence 45688888987554431 1 2234455555554421 2578999999986643
No 50
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=26.80 E-value=31 Score=31.28 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=22.6
Q ss_pred eEEeeEEEE-cCeeeccccChhHHHHHH
Q 012674 379 VTILPTLVI-NDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 379 v~~lPtl~I-N~~~yrG~L~~~~v~~aI 405 (458)
|.-.||++| ||+.+.|-++.+.+.++|
T Consensus 179 V~gTPt~vi~nG~~~~G~~~~~~l~~~l 206 (211)
T 1t3b_A 179 VRGTPSIVTSTGELIGGYLKPADLLRAL 206 (211)
T ss_dssp CCSSCEEECTTSCCCCSCCCHHHHHHHH
T ss_pred CCcCCEEEEeCCEEecCCCCHHHHHHHH
Confidence 677899999 999999988887776655
No 51
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=26.68 E-value=73 Score=25.17 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=34.3
Q ss_pred HHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHHHH
Q 012674 333 AEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 333 s~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aI 405 (458)
+.+.|++.||+.++++- . .++-..+++. +...|. .-+|+|+|++-..-+..+.+++.+++
T Consensus 20 aK~~L~~~gi~y~~idi--~------~d~~~~~~~~-~~~~G~----~tVP~I~i~Dg~~l~~~~~~el~~~L 79 (92)
T 2lqo_A 20 LKTALTANRIAYDEVDI--E------HNRAAAEFVG-SVNGGN----RTVPTVKFADGSTLTNPSADEVKAKL 79 (92)
T ss_dssp HHHHHHHTTCCCEEEET--T------TCHHHHHHHH-HHSSSS----SCSCEEEETTSCEEESCCHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEc--C------CCHHHHHHHH-HHcCCC----CEeCEEEEeCCEEEeCCCHHHHHHHH
Confidence 36789999998765531 1 2333344433 232332 35799999654444445666665554
No 52
>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19
Probab=25.89 E-value=63 Score=31.14 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=20.5
Q ss_pred EEeeEEEEcCeeeccccChhHHHHHHhcc
Q 012674 380 TILPTLVINDVQYRGKLERTAVLRAICAG 408 (458)
Q Consensus 380 ~~lPtl~IN~~~yrG~L~~~~v~~aICag 408 (458)
++.|.++|||+..-|--+.+.+.++|=..
T Consensus 113 VyTPqI~Ing~~~v~G~d~~~l~~~l~~~ 141 (270)
T 2axo_A 113 VYTPQAILNGRDHVKGADVRGIYDRLDAF 141 (270)
T ss_dssp CCSSEEEETTTEEEETTCHHHHHHHHHHH
T ss_pred ccCCEEEECCEEeecCCCHHHHHHHHHHh
Confidence 45699999999643444777777777433
No 53
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=24.48 E-value=14 Score=24.36 Aligned_cols=16 Identities=50% Similarity=1.155 Sum_probs=12.2
Q ss_pred HHHhccCcCCCCCccccCC
Q 012674 403 RAICAGFKEATEPQICLTG 421 (458)
Q Consensus 403 ~aICagf~~~t~P~~C~~~ 421 (458)
.+||.+| .+|+.|-++
T Consensus 8 ~~ic~~f---~~p~~ccsg 23 (37)
T 4aor_D 8 GAICSGF---GPPEQCCSG 23 (37)
T ss_dssp TCEECTT---SCGGGBTTS
T ss_pred CCccCCC---CCccccccc
Confidence 3699999 578887665
No 54
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=23.68 E-value=56 Score=25.79 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=29.1
Q ss_pred HHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeecc
Q 012674 333 AEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRG 394 (458)
Q Consensus 333 s~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG 394 (458)
+..+++.++++...++- + .++-+.+++....+ +..+|+|+|||....|
T Consensus 38 ~~~~L~~~~i~~~~vdi-------~-~~~~~~~~l~~~~g------~~~vP~v~i~g~~igg 85 (105)
T 2yan_A 38 ILEILNSTGVEYETFDI-------L-EDEEVRQGLKAYSN------WPTYPQLYVKGELVGG 85 (105)
T ss_dssp HHHHHHHHTCCCEEEEG-------G-GCHHHHHHHHHHHT------CCSSCEEEETTEEEEC
T ss_pred HHHHHHHCCCCeEEEEC-------C-CCHHHHHHHHHHHC------CCCCCeEEECCEEEeC
Confidence 35678888876544421 1 23445555544433 3568999999987654
No 55
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=23.48 E-value=58 Score=23.22 Aligned_cols=56 Identities=7% Similarity=0.197 Sum_probs=32.7
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHHHH
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aI 405 (458)
..+++.+|++.+.++- + .++-+.++++ +.+ +..+|++++||....| .+.+.+.+.|
T Consensus 18 ~~~l~~~~i~~~~~di-------~-~~~~~~~~~~-~~~------~~~vP~l~~~g~~~~g-~~~~~l~~~l 73 (75)
T 1r7h_A 18 KKALDRAGLAYNTVDI-------S-LDDEARDYVM-ALG------YVQAPVVEVDGEHWSG-FRPERIKQLQ 73 (75)
T ss_dssp HHHHHHTTCCCEEEET-------T-TCHHHHHHHH-HTT------CBCCCEEEETTEEEES-CCHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEC-------C-CCHHHHHHHH-HcC------CCccCEEEECCeEEcC-CCHHHHHHHH
Confidence 5677788877554421 1 2233334432 222 4678999999987655 5766655543
No 56
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=22.48 E-value=67 Score=26.05 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=29.3
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeecc
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRG 394 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG 394 (458)
.++++..|++.+.++- + .++-+.+++....+. .-+|.|+|||...-|
T Consensus 38 k~~L~~~gi~y~~~di-------~-~d~~~~~~l~~~~g~------~tvP~ifi~g~~iGG 84 (111)
T 3zyw_A 38 VEILHKHNIQFSSFDI-------F-SDEEVRQGLKAYSSW------PTYPQLYVSGELIGG 84 (111)
T ss_dssp HHHHHHTTCCCEEEEG-------G-GCHHHHHHHHHHHTC------CSSCEEEETTEEEEC
T ss_pred HHHHHHcCCCeEEEEC-------c-CCHHHHHHHHHHHCC------CCCCEEEECCEEEec
Confidence 6788889987554421 1 134445555444332 457999999987755
No 57
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=21.87 E-value=73 Score=31.30 Aligned_cols=48 Identities=27% Similarity=0.453 Sum_probs=34.4
Q ss_pred ccCCCcccccchhHHHHHHHHhcCCCCCceEEee-EEEEcCeeeccc----cChhHHHHHHhcc
Q 012674 350 CIGDPEADVENEVLKTEQEFQVGRGSRGDVTILP-TLVINDVQYRGK----LERTAVLRAICAG 408 (458)
Q Consensus 350 C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lP-tl~IN~~~yrG~----L~~~~v~~aICag 408 (458)
-+.||.+|..-.+++ ++ +|.++| .|.|+|+.|+.. |+.+++++.+=++
T Consensus 39 IvtDSt~dL~~e~~~-----~~------~I~vvPL~v~~~~~~Y~D~vd~~i~~~efy~~m~~~ 91 (320)
T 3pl5_A 39 ILTDSTADLPESWTQ-----EN------DVQVLGLTVQLDGITYETVGPDRLTSRVLLEKIAAG 91 (320)
T ss_dssp EEEEGGGCCCHHHHH-----HH------TEEEECCEEEETTEEEESSSTTCCCHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHH-----hC------CeEEEeEEEEECCEEEEcCCCCCcCHHHHHHHHhcC
Confidence 456776663333332 22 389999 899999999876 7889999988554
No 58
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.49 E-value=54 Score=26.52 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=29.4
Q ss_pred HHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCC--CceEEeeEEEEcCeeec
Q 012674 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSR--GDVTILPTLVINDVQYR 393 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~--~~v~~lPtl~IN~~~yr 393 (458)
.++++.++|+.+.|+= + .++-+.+++....+...+ .+...+|.|+||+...-
T Consensus 31 k~~L~~~gi~y~~vdI-------~-~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~iG 84 (111)
T 2ct6_A 31 VRFLEANKIEFEEVDI-------T-MSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCG 84 (111)
T ss_dssp HHHHHHTTCCEEEEET-------T-TCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEEE
T ss_pred HHHHHHcCCCEEEEEC-------C-CCHHHHHHHHHHhcccccccCCCCCCCEEEECCEEEe
Confidence 5678888887554431 1 234555565544311000 12457899999998654
No 59
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=21.39 E-value=76 Score=23.25 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=13.6
Q ss_pred eEEeeEEEEcCeeecc
Q 012674 379 VTILPTLVINDVQYRG 394 (458)
Q Consensus 379 v~~lPtl~IN~~~yrG 394 (458)
+..+|+++|||+...|
T Consensus 56 ~~~vP~i~~~g~~i~~ 71 (85)
T 1ego_A 56 VETVPQIFVDQQHIGG 71 (85)
T ss_dssp SCCSCEEEETTEEEES
T ss_pred CceeCeEEECCEEEEC
Confidence 5789999999988765
No 60
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=21.15 E-value=51 Score=26.36 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=30.3
Q ss_pred HHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeecc
Q 012674 333 AEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRG 394 (458)
Q Consensus 333 s~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG 394 (458)
+.++++.+|++.+.|+- + .++-+.+++....+ ...+|.|+|||...-|
T Consensus 36 ak~~L~~~~i~~~~vdi-------~-~~~~~~~~l~~~~g------~~~vP~ifi~g~~igG 83 (109)
T 1wik_A 36 ILEILNSTGVEYETFDI-------L-EDEEVRQGLKTFSN------WPTYPQLYVRGDLVGG 83 (109)
T ss_dssp HHHHHHHTCSCEEEEES-------S-SCHHHHHHHHHHHS------CCSSCEEECSSSEEEC
T ss_pred HHHHHHHcCCCeEEEEC-------C-CCHHHHHHHHHHhC------CCCCCEEEECCEEEcC
Confidence 36688888987554431 1 23445555554443 2568999999997755
No 61
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=21.02 E-value=91 Score=30.19 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=26.3
Q ss_pred ceEEee-EEEEcCeeecc--ccChhHHHHHHhcc
Q 012674 378 DVTILP-TLVINDVQYRG--KLERTAVLRAICAG 408 (458)
Q Consensus 378 ~v~~lP-tl~IN~~~yrG--~L~~~~v~~aICag 408 (458)
+|.++| .+.++|+.|+. +|+.+++++.+=++
T Consensus 41 ~I~vvPL~v~~~~~~y~D~~di~~~efy~~~~~~ 74 (298)
T 3jr7_A 41 GFEHVALGIQIEDTQWTDDDSLKQEELLLKIAES 74 (298)
T ss_dssp SEEEECCEEEETTEEEECSTTSCHHHHHHHHHHC
T ss_pred CeEEEEEEEEECCEEEecCCCCCHHHHHHHHHhC
Confidence 489999 99999999986 47889999988553
No 62
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=20.71 E-value=56 Score=24.97 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred eEEeeEEEE--cCee---eccccChhHHHHHH
Q 012674 379 VTILPTLVI--NDVQ---YRGKLERTAVLRAI 405 (458)
Q Consensus 379 v~~lPtl~I--N~~~---yrG~L~~~~v~~aI 405 (458)
|..+||+++ ||+. +.|.++.+.+.+.|
T Consensus 72 v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l 103 (108)
T 2trx_A 72 IRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103 (108)
T ss_dssp CCSSSEEEEEETTEEEEEEESCCCHHHHHHHH
T ss_pred CcccCEEEEEeCCEEEEEEecCCCHHHHHHHH
Confidence 567899988 8886 67888877765544
No 63
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=20.03 E-value=61 Score=26.82 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=28.7
Q ss_pred HHHHHHcCCCHHhhccc-cCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeecc
Q 012674 334 EEVMKSLDLPIEKIRKC-IGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRG 394 (458)
Q Consensus 334 ~~v~k~l~id~~~i~~C-~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG 394 (458)
.++++.+|++...++.= +. .++-+.+++....+. .-+|.|+|||+.+-|
T Consensus 38 k~lL~~~gv~~~~~~~~dv~------~~~~~~~~l~~~sg~------~tvP~vfI~g~~iGG 87 (121)
T 3gx8_A 38 IGLLGNQGVDPAKFAAYNVL------EDPELREGIKEFSEW------PTIPQLYVNKEFIGG 87 (121)
T ss_dssp HHHHHHHTBCGGGEEEEECT------TCHHHHHHHHHHHTC------CSSCEEEETTEEEES
T ss_pred HHHHHHcCCCcceEEEEEec------CCHHHHHHHHHHhCC------CCCCeEEECCEEEec
Confidence 67888889883322110 11 233444555444332 457999999987755
Done!