Query 012674
Match_columns 458
No_of_seqs 295 out of 1242
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 14:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012674.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012674hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1de4c2 c.8.4.1 (C:190-382) Tr 98.9 1.5E-09 1.1E-13 99.2 9.2 104 67-177 35-161 (193)
2 d3bi1a2 c.8.4.1 (A:118-350) Gl 98.5 5E-08 3.6E-12 91.5 7.5 105 68-177 50-193 (233)
3 d1beda_ c.47.1.13 (A:) Disulfi 94.8 0.25 1.8E-05 41.2 13.5 65 333-404 106-173 (181)
4 d1z6ma1 c.47.1.13 (A:1-172) Hy 94.3 0.24 1.7E-05 41.2 11.9 52 347-405 119-170 (172)
5 d1fvka_ c.47.1.13 (A:) Disulfi 92.0 0.11 7.8E-06 44.1 6.1 56 328-390 103-158 (188)
6 d1un2a_ c.47.1.13 (A:) Disulfi 87.5 0.13 9.4E-06 45.3 2.8 51 333-390 9-59 (195)
7 d3bpse1 g.3.11.1 (E:293-332) L 76.7 0.26 1.9E-05 32.4 0.2 23 425-454 2-24 (40)
8 d1hyua4 c.47.1.2 (A:103-198) A 63.6 1.6 0.00012 33.1 2.3 27 379-405 66-93 (96)
9 d1nhoa_ c.47.1.1 (A:) MTH807, 61.3 1.8 0.00013 31.8 2.1 29 377-405 51-80 (85)
10 d1apqa_ g.3.11.1 (A:) Compleme 54.8 2.2 0.00016 29.2 1.4 32 423-454 2-34 (53)
11 d1uzka1 g.3.11.1 (A:1486-1528) 41.5 3.8 0.00028 26.7 0.9 24 424-454 2-25 (43)
12 d1r4wa_ c.47.1.13 (A:) Mitocho 41.2 53 0.0039 26.7 8.9 92 309-405 112-209 (221)
13 d1fo5a_ c.47.1.1 (A:) MJ0307, 41.0 7.2 0.00052 28.0 2.6 29 377-405 52-81 (85)
14 d1eeja1 c.47.1.9 (A:61-216) Di 40.1 7.7 0.00056 31.5 2.9 27 379-405 119-146 (156)
15 d1t3ba1 c.47.1.9 (A:61-210) Di 32.3 11 0.00079 30.4 2.5 27 379-405 119-146 (150)
16 d1emoa1 g.3.11.1 (A:2124-2166) 30.7 8.1 0.00059 25.1 1.1 26 422-454 2-27 (43)
17 d1nzia2 g.3.11.1 (A:118-159) C 30.7 5.7 0.00042 25.9 0.3 22 426-454 1-23 (42)
18 d3c8ya2 d.15.4.2 (A:1-126) Fe- 30.6 19 0.0014 28.8 3.7 60 383-449 2-65 (126)
19 d1nt0a3 g.3.11.1 (A:120-164) M 29.0 5.2 0.00038 26.3 -0.1 25 426-454 2-26 (45)
20 d1iloa_ c.47.1.1 (A:) MTH985, 29.0 10 0.00075 27.9 1.6 55 331-404 19-75 (77)
21 d1szba2 g.3.11.1 (A:124-168) M 29.0 6.2 0.00045 25.9 0.3 23 425-454 1-26 (45)
22 d1ijqa2 g.3.11.1 (A:643-692) L 28.2 5.4 0.00039 27.0 -0.2 15 424-438 3-17 (50)
23 d1lmja1 g.3.11.1 (A:3-46) Fibr 27.9 7.7 0.00056 25.5 0.6 25 424-454 2-26 (44)
24 d2bz6l1 g.3.11.1 (L:90-142) Co 26.5 5.7 0.00042 27.2 -0.3 10 428-437 2-11 (53)
25 d1xppa_ d.74.3.2 (A:) DNA-dire 26.0 1.2E+02 0.0084 22.5 7.6 41 164-207 22-63 (99)
26 d1lmja2 g.3.11.1 (A:47-88) Fib 24.5 6.6 0.00048 25.4 -0.3 24 425-454 2-25 (42)
27 d2axoa1 c.47.1.19 (A:38-262) H 21.8 39 0.0029 29.3 4.5 51 353-407 53-103 (225)
28 d2p3ua1 g.3.11.1 (A:87-137) Fa 21.2 9.1 0.00066 25.9 -0.1 21 427-454 2-22 (51)
29 d1uzka2 g.3.11.1 (A:1605-1647) 20.1 9.3 0.00068 24.8 -0.2 25 424-454 2-26 (43)
No 1
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.91 E-value=1.5e-09 Score=99.25 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=69.3
Q ss_pred CCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCC-c-------
Q 012674 67 YGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEP-L------- 138 (458)
Q Consensus 67 yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~e~-l------- 138 (458)
+.+.++|.|||+- . +...++. .+ .....|+|||++||.++|.+|++|||++||+|||||.|..+. .
T Consensus 35 ~~G~v~g~lVy~n---~-G~~~Df~-~L-~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~ 108 (193)
T d1de4c2 35 KAATVTGKLVHAN---F-GTKKDFE-DL-YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSF 108 (193)
T ss_dssp CCEEEEECEEECS---T-TCHHHHH-TC-SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCC
T ss_pred CCCceeEEEEEcc---C-CCHHHHH-Hh-ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCccccc
Confidence 3578999999952 2 2322211 11 123459999999999999999999999999999999864221 0
Q ss_pred ---cccCCCCC-Ccc-----------cCCCccccCceEEEEeHHHHHHHHHHHH
Q 012674 139 ---ITMDSPEE-STD-----------ANGYVEKIGIPSALIDRAFGLSLKEALK 177 (458)
Q Consensus 139 ---~tM~~~~d-~~~-----------~~~~~~~i~IPsv~Is~~dG~~L~~~l~ 177 (458)
..+. ++| -++ ......-..||+.-|+.+|++.|++.|.
T Consensus 109 ~g~~~~~-~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 109 FGHAHLG-TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp CEECCSS-SSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred ccccccC-CCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 0110 111 000 0111223579999999999999999984
No 2
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.54 E-value=5e-08 Score=91.47 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCC---CCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCC---------
Q 012674 68 GGFMVGSVIYPDKGASGCQPFEGDKPF---KSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVD--------- 135 (458)
Q Consensus 68 g~~l~G~lv~~~~~~~gC~~~~~~~~~---~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~dn~~--------- 135 (458)
.+.++|.|||+- . |...++. .+ .....+++|||+++|.++|.+|+++||++||+|||||++..
T Consensus 50 ~G~v~g~~Vyvn---y-G~~~Df~-~L~~~~gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP~d~~~~g~~~ 124 (233)
T d3bi1a2 50 QGMPEGDLVYVN---Y-ARTEDFF-KLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGVKS 124 (233)
T ss_dssp CBCCEECEEECT---T-CCHHHHH-HHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCB
T ss_pred CCceeEEEEEec---C-CcHHHHH-HHHHhcCCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecChHHccCccccc
Confidence 468999999962 2 3332211 01 01234599999999999999999999999999999998621
Q ss_pred ---------CC-----ccccCCCCCC-ccc------------CCCccccCceEEEEeHHHHHHHHHHHH
Q 012674 136 ---------EP-----LITMDSPEES-TDA------------NGYVEKIGIPSALIDRAFGLSLKEALK 177 (458)
Q Consensus 136 ---------e~-----l~tM~~~~d~-~~~------------~~~~~~i~IPsv~Is~~dG~~L~~~l~ 177 (458)
+. +..+..++|- +++ +....-..||+.=|+..|+..|++.|.
T Consensus 125 yP~~~~~p~~~vqrgsv~~~~~~GDplTPg~ps~~~~~r~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 193 (233)
T d3bi1a2 125 YPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEAVGLPSIPVHPIGYYDAQKLLEKMG 193 (233)
T ss_dssp TTSSSBCCTTCCCCEECCCCTTCCSTTCTTSCCCTTCCCCCGGGCSSCCSSCEEEECHHHHHHHHTTBC
T ss_pred ccCCccCCCCceeEeeeeecCCCCCCCCCCCCCCCCCcccChhHhcCCCCCceeccCHHHHHHHHHHcC
Confidence 00 0001111210 000 011123689999999999999999985
No 3
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}
Probab=94.84 E-value=0.25 Score=41.22 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeee---ccccChhHHHHH
Q 012674 333 AEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQY---RGKLERTAVLRA 404 (458)
Q Consensus 333 s~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~y---rG~L~~~~v~~a 404 (458)
..+..+..|+|.+++++|+.+.. ..+.+.+.+...+. .+|.--||++|||+.. +|-.+.+..++.
T Consensus 106 l~~~~~~~gvd~~~~~~~~~~~~--~~~~v~~~~~~~~~-----~gi~gTPt~~InGk~~v~~~~~~~~~~l~~~ 173 (181)
T d1beda_ 106 LRQIFLDEGIDAAKFDAAYNGFA--VDSMVRRFDKQFQD-----SGLTGVPAVVVNNRYLVQGQSVKSLDEYFDL 173 (181)
T ss_dssp HHHHHHTTTCCHHHHHHHHTSHH--HHHHHHHHHHHHHH-----HTCCSSSEEEETTTEEECGGGCCSHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhChH--HHHHHHHHHHHHHH-----hCCccccEEEECCEEeeCCCCCCCHHHHHHH
Confidence 46788889999999999997753 23333333322221 3367789999999843 444455555544
No 4
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}
Probab=94.26 E-value=0.24 Score=41.20 Aligned_cols=52 Identities=8% Similarity=0.194 Sum_probs=34.3
Q ss_pred hccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHHHH
Q 012674 347 IRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 347 i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aI 405 (458)
.+.|+.+.. .+..+++.+...-. .+|.--||++|||+.+.|.++.+++.+.|
T Consensus 119 ~~~~~~~~~---~~~~i~~~~~~a~~----~gI~gTPt~~Ing~~~~g~~~~~~~~~~i 170 (172)
T d1z6ma1 119 KNLGLKEQK---DATLVSAVIAEANA----AHIQFVPTIIIGEYIFDESVTEEELRGYI 170 (172)
T ss_dssp HTSCCCCCC---CHHHHHHHHHHHHH----HTCCSSCEEEETTEEECTTCCHHHHHHHH
T ss_pred hhhhhhhHH---HHHHHHHHHHHHHH----cCCCcCCEEEECCEEecCCCCHHHHHHHH
Confidence 345766432 33445444332211 23667799999999999999999887765
No 5
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}
Probab=92.02 E-value=0.11 Score=44.15 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCe
Q 012674 328 YSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDV 390 (458)
Q Consensus 328 ~~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~ 390 (458)
...+-..++++..|+|.+++++|+.+.. ....+++..+.... .+|.--||++|||+
T Consensus 103 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~---~~~~v~~~~~~a~~----~gI~gTPt~vInGk 158 (188)
T d1fvka_ 103 RSASDIRDVFINAGIKGEEYDAAWNSFV---VKSLVAQQEKAAAD----VQLRGVPAMFVNGK 158 (188)
T ss_dssp CSHHHHHHHHHHTTCCHHHHHHHHHCHH---HHHHHHHHHHHHHH----TTCCSSSEEEETTT
T ss_pred chHHHHHHHHHHccCCHHHHHhhhccHH---HHHHHHHHHHHHHH----cCCccccEEEECCE
Confidence 3367788999999999999999997653 23344444333222 23778899999996
No 6
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}
Probab=87.52 E-value=0.13 Score=45.31 Aligned_cols=51 Identities=8% Similarity=0.117 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCe
Q 012674 333 AEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDV 390 (458)
Q Consensus 333 s~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~ 390 (458)
-.+++.+.|+|.+++++|+.+.. ....+++....... .+|.-.||++|||+
T Consensus 9 i~~~~~~~Gld~~~f~~~~~s~~---~~~~v~~~~~~a~~----~gi~GtPtfiVnGk 59 (195)
T d1un2a_ 9 IRDVFINAGIKGEEYDAAWNSFV---VKSLVAQQEKAAAD----VQLRGVPAMFVNGK 59 (195)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSHH---HHHHHHHHHHHHHH----TTCCSSSEEEETTT
T ss_pred HHHHHHHcCCCHHHHHHHHcCHH---HHHHHHHHHHHHHH----hCCCcCCEEEECCe
Confidence 46788999999999999997643 33344443332222 34788999999997
No 7
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.65 E-value=0.26 Score=32.44 Aligned_cols=23 Identities=43% Similarity=0.969 Sum_probs=19.2
Q ss_pred chhhhcCCCceeccCCCccchhcccccccc
Q 012674 425 TNECLERNGGCWQDTQANITACKVYHRNFR 454 (458)
Q Consensus 425 ~~~c~~~~~~c~~~~~~~~~~c~~~~~~~~ 454 (458)
+|||+.+||||. --|.+|..||+
T Consensus 2 ~neC~~~nggC~-------h~C~n~~g~~~ 24 (40)
T d3bpse1 2 TNECLDNNGGCS-------HVCNDLKIGYE 24 (40)
T ss_dssp SCGGGTGGGGCS-------SEEEECSSSEE
T ss_pred cccCCCCCCCCc-------CEEEcCCCCEE
Confidence 689999999997 36888888774
No 8
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=63.64 E-value=1.6 Score=33.11 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=23.2
Q ss_pred eEEeeEEEEcCee-eccccChhHHHHHH
Q 012674 379 VTILPTLVINDVQ-YRGKLERTAVLRAI 405 (458)
Q Consensus 379 v~~lPtl~IN~~~-yrG~L~~~~v~~aI 405 (458)
|.-+||+++||.. |.|..+.++++..|
T Consensus 66 I~~vPt~~~ng~~~~~G~~~~~~l~~~l 93 (96)
T d1hyua4 66 VMGVPAVFVNGKEFGQGRMTLTEIVAKV 93 (96)
T ss_dssp CCSSSEEEETTEEEEESCCCHHHHHHHH
T ss_pred cccccEEEECCEEEEecCCCHHHHHHHH
Confidence 6779999999984 68999999988776
No 9
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=61.29 E-value=1.8 Score=31.78 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=24.2
Q ss_pred CceEEeeEEEEcCee-eccccChhHHHHHH
Q 012674 377 GDVTILPTLVINDVQ-YRGKLERTAVLRAI 405 (458)
Q Consensus 377 ~~v~~lPtl~IN~~~-yrG~L~~~~v~~aI 405 (458)
.+|..+||+++|+.. |.|..+.+.+.++|
T Consensus 51 ~~V~~~Pt~~~~~~~~~~G~~~~~~l~~~i 80 (85)
T d1nhoa_ 51 YGLMAVPAIAINGVVRFVGAPSREELFEAI 80 (85)
T ss_dssp TCSSCSSEEEETTTEEEECSSCCHHHHHHH
T ss_pred cCceEeCEEEECCcEEEEcCCCHHHHHHHH
Confidence 348899999999887 88998888887766
No 10
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.83 E-value=2.2 Score=29.20 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=23.3
Q ss_pred CCchhhhcCCCceeccCC-Cccchhcccccccc
Q 012674 423 LETNECLERNGGCWQDTQ-ANITACKVYHRNFR 454 (458)
Q Consensus 423 ~~~~~c~~~~~~c~~~~~-~~~~~c~~~~~~~~ 454 (458)
++.|||..++++|-.+.. .--..|.+|..||+
T Consensus 2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~ 34 (53)
T d1apqa_ 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYF 34 (53)
T ss_dssp CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEE
T ss_pred eecccccCCCCCcccCCCCCccCEeEcCCCCeE
Confidence 578999999888854422 22456999998885
No 11
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.45 E-value=3.8 Score=26.70 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=18.4
Q ss_pred CchhhhcCCCceeccCCCccchhcccccccc
Q 012674 424 ETNECLERNGGCWQDTQANITACKVYHRNFR 454 (458)
Q Consensus 424 ~~~~c~~~~~~c~~~~~~~~~~c~~~~~~~~ 454 (458)
+.|||..++++|- ..|.+|..||+
T Consensus 2 DidEC~~~~~~c~-------~~C~Nt~G~y~ 25 (43)
T d1uzka1 2 DVNECLDPTTCIS-------GNCVNTPGSYI 25 (43)
T ss_dssp CCCGGGSTTSSBT-------SEEEEETTEEE
T ss_pred CccccCCCCcCcC-------CEeECCCCCEE
Confidence 4689988887773 36999988875
No 12
>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=41.23 E-value=53 Score=26.66 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=50.6
Q ss_pred hhhhHHHHHHhhcCcchhh-hhHHHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEE
Q 012674 309 VWWDYVTDFHIRCSMKEKR-YSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (458)
Q Consensus 309 ~WW~Y~~~F~~~C~~~~~~-~~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~I 387 (458)
.-++|+...-......... -..+=-.++..++|++.+..++=......+..-..|++..+.-...| |+-.||.+|
T Consensus 112 ~~~~~~~~l~~a~~~~g~di~d~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~k~~l~~~~~~A~~~G----vfGvPtfvi 187 (221)
T d1r4wa_ 112 MLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKYG----AFGLPTTVA 187 (221)
T ss_dssp GHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHTT----CCSSCEEEE
T ss_pred hHHHHHHHHHHHHhccCCcccchHHHHHHHHHhCccccccccccccccCHHHHHHHHHHHHHHHHCC----CeECCEEEE
Confidence 3456666644333322222 22567778888888887776654432211122223433333233343 788999999
Q ss_pred cC----eeeccccCh-hHHHHHH
Q 012674 388 ND----VQYRGKLER-TAVLRAI 405 (458)
Q Consensus 388 N~----~~yrG~L~~-~~v~~aI 405 (458)
|+ ..|-|+ +. +-|.++|
T Consensus 188 ~~~~~~e~f~G~-Drl~~l~~~L 209 (221)
T d1r4wa_ 188 HVDGKTYMLFGS-DRMELLAYLL 209 (221)
T ss_dssp EETTEEEEEEST-TCHHHHHHHH
T ss_pred ccCCCcceeecc-cCHHHHHHHH
Confidence 94 678888 43 3444444
No 13
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=41.04 E-value=7.2 Score=27.98 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=21.6
Q ss_pred CceEEeeEEEEcCe-eeccccChhHHHHHH
Q 012674 377 GDVTILPTLVINDV-QYRGKLERTAVLRAI 405 (458)
Q Consensus 377 ~~v~~lPtl~IN~~-~yrG~L~~~~v~~aI 405 (458)
.+|.-+||++|++. +|-|..+.+.+.+.|
T Consensus 52 ~~V~~~Pt~~i~~~g~~~G~~~~~~l~~~i 81 (85)
T d1fo5a_ 52 YGIMAVPTIVINGDVEFIGAPTKEALVEAI 81 (85)
T ss_dssp TTTCCSSEEEETTEEECCSSSSSHHHHHHH
T ss_pred CCceEeeEEEEECCcEEECCCCHHHHHHHH
Confidence 34788999999886 466777777776654
No 14
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=40.11 E-value=7.7 Score=31.53 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=21.9
Q ss_pred eEEeeEEEE-cCeeeccccChhHHHHHH
Q 012674 379 VTILPTLVI-NDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 379 v~~lPtl~I-N~~~yrG~L~~~~v~~aI 405 (458)
|.--||++| ||+.+.|-++.+.+.++|
T Consensus 119 v~GTPt~~~~nG~~v~G~~~~e~l~~~i 146 (156)
T d1eeja1 119 VSGTPAVVLSNGTLVPGYQPPKEMKEFL 146 (156)
T ss_dssp CCSSSEEECTTSCEEESCCCHHHHHHHH
T ss_pred CcCCCEEEEeCCeEecCCCCHHHHHHHH
Confidence 556699888 889999999988776655
No 15
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=32.29 E-value=11 Score=30.43 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=22.5
Q ss_pred eEEeeEEEE-cCeeeccccChhHHHHHH
Q 012674 379 VTILPTLVI-NDVQYRGKLERTAVLRAI 405 (458)
Q Consensus 379 v~~lPtl~I-N~~~yrG~L~~~~v~~aI 405 (458)
|.--||++| ||+.+.|-+..+.+.++|
T Consensus 119 v~GTPt~~~~nG~~i~G~~~~~~l~~~l 146 (150)
T d1t3ba1 119 VRGTPSIVTSTGELIGGYLKPADLLRAL 146 (150)
T ss_dssp CCSSCEEECTTSCCCCSCCCHHHHHHHH
T ss_pred cCCCCEEEEcCCcEecCCCCHHHHHHHH
Confidence 666799888 889999999998877665
No 16
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.69 E-value=8.1 Score=25.13 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=17.9
Q ss_pred CCCchhhhcCCCceeccCCCccchhcccccccc
Q 012674 422 DLETNECLERNGGCWQDTQANITACKVYHRNFR 454 (458)
Q Consensus 422 ~~~~~~c~~~~~~c~~~~~~~~~~c~~~~~~~~ 454 (458)
.++.|||+.++.+|- ..|.+|.-+|.
T Consensus 2 CvDidEC~~~~~~~~-------~~C~Nt~Gsy~ 27 (43)
T d1emoa1 2 AVDMDECKEPDVCKH-------GQCINTDGSYR 27 (43)
T ss_dssp CCCCCSSSSTTSCSS-------SCCCCCSSCCC
T ss_pred CcceeccCCcCCCCC-------CEeECCCCCeE
Confidence 467899987776662 34777776664
No 17
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.69 E-value=5.7 Score=25.88 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=17.0
Q ss_pred hhhhc-CCCceeccCCCccchhcccccccc
Q 012674 426 NECLE-RNGGCWQDTQANITACKVYHRNFR 454 (458)
Q Consensus 426 ~~c~~-~~~~c~~~~~~~~~~c~~~~~~~~ 454 (458)
|||.. .+++|. .-|.+|..||+
T Consensus 1 dEC~~~~~~~C~-------~~C~n~~Gsy~ 23 (42)
T d1nzia2 1 NECTDFVDVPCS-------HFCNNFIGGYF 23 (42)
T ss_dssp CTTTC-CCCCSS-------SEEEEETTEEE
T ss_pred CCCCCCCCcCCC-------CEeecCCCCEE
Confidence 69975 568896 35999988886
No 18
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}
Probab=30.62 E-value=19 Score=28.84 Aligned_cols=60 Identities=25% Similarity=0.469 Sum_probs=39.4
Q ss_pred eEEEEcCeeeccccChhHHHHHHhccCcCCCCCccccCCCCC--chhhhcCCCceecc--CCCccchhccc
Q 012674 383 PTLVINDVQYRGKLERTAVLRAICAGFKEATEPQICLTGDLE--TNECLERNGGCWQD--TQANITACKVY 449 (458)
Q Consensus 383 Ptl~IN~~~yrG~L~~~~v~~aICagf~~~t~P~~C~~~~~~--~~~c~~~~~~c~~~--~~~~~~~c~~~ 449 (458)
.||+|||+.+... ..+.|++|.=+.= ...|..|....+. ...|.. |+.. +...++||.-.
T Consensus 2 vti~IdG~~v~~~-~G~til~aa~~~g--i~IP~lC~~~~l~~~~G~Cr~----C~Vev~G~~~v~AC~t~ 65 (126)
T d3c8ya2 2 KTIIINGVQFNTD-EDTTILKFARDNN--IDISALCFLNNCNNDINKCEI----CTVEVEGTGLVTACDTL 65 (126)
T ss_dssp EEEEETTEEEEEC-CCCBHHHHHHHTT--CCCCCSSCBTTBCCSSSCCCT----TEEEETTTEEEEGGGCB
T ss_pred cEEEECCEEEEeC-CCChHHHHHHHcC--CccchhhhccCCCCCCcccee----EEEEEccCccccccccC
Confidence 5899999999876 5667777654433 4789999866653 234522 6644 33357888643
No 19
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.04 E-value=5.2 Score=26.32 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=12.3
Q ss_pred hhhhcCCCceeccCCCccchhcccccccc
Q 012674 426 NECLERNGGCWQDTQANITACKVYHRNFR 454 (458)
Q Consensus 426 ~~c~~~~~~c~~~~~~~~~~c~~~~~~~~ 454 (458)
|||+..|+++- .-...|.+|..||+
T Consensus 2 dEC~~~~~~~~----~C~~~C~Nt~gsy~ 26 (45)
T d1nt0a3 2 DECRTSLGDSV----PCDHYCHNYLGGYY 26 (45)
T ss_dssp CTTC-----------CCSSEEEEETTEEE
T ss_pred cCCccCCCCcC----CCCCEeecCCCCEE
Confidence 79988887732 11246888888874
No 20
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.01 E-value=10 Score=27.91 Aligned_cols=55 Identities=22% Similarity=0.424 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCHHhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCee-ecccc-ChhHHHHH
Q 012674 331 ECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQ-YRGKL-ERTAVLRA 404 (458)
Q Consensus 331 ~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~-yrG~L-~~~~v~~a 404 (458)
+=.+++.+.+|++.+ |++= .| .. |+ .+++ |.-.|+|+|||+. +-|++ +.+++.+.
T Consensus 19 ~~v~~a~~e~gi~a~-v~kv-~d-----~~-----ei-~~yg------VmstPalvIdg~vv~~G~vPs~~ei~~~ 75 (77)
T d1iloa_ 19 KNAREAVKELGIDAE-FEKI-KE-----MD-----QI-LEAG------LTALPGLAVDGELKIMGRVASKEEIKKI 75 (77)
T ss_dssp HHHHHHHHHTTCCEE-EEEE-CS-----HH-----HH-HHHT------CSSSSCEEETTEEEECSSCCCHHHHHHH
T ss_pred HHHHHHHHHcCCceE-EEEe-CC-----HH-----HH-HHcC------CcCCCEEEECCEEEEEecCCCHHHHHHH
Confidence 345678888998744 2221 11 11 22 2332 6677999999987 68987 77777654
No 21
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.98 E-value=6.2 Score=25.91 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=16.3
Q ss_pred chhhhcCCC---ceeccCCCccchhcccccccc
Q 012674 425 TNECLERNG---GCWQDTQANITACKVYHRNFR 454 (458)
Q Consensus 425 ~~~c~~~~~---~c~~~~~~~~~~c~~~~~~~~ 454 (458)
.|||+..++ +|. ..|.+|-.||+
T Consensus 1 IdEC~~~~~~~~~C~-------~~C~Nt~Gsy~ 26 (45)
T d1szba2 1 IDECQVAPGEAPTCD-------HHCHNHLGGFY 26 (45)
T ss_dssp CCTTCCCTTSCCSSS-------SEEEEETTEEE
T ss_pred CcCCcCCCCCCCCCC-------CCCccCCCCeE
Confidence 378988777 453 56888877775
No 22
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.17 E-value=5.4 Score=27.02 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=11.9
Q ss_pred CchhhhcCCCceecc
Q 012674 424 ETNECLERNGGCWQD 438 (458)
Q Consensus 424 ~~~~c~~~~~~c~~~ 438 (458)
+.|||..+||||.+-
T Consensus 3 ~cneC~~~NGGC~h~ 17 (50)
T d1ijqa2 3 WCERTTLSNGGCQYL 17 (50)
T ss_dssp TTSSSSSGGGGCSSE
T ss_pred cccccCCCCCCCcCc
Confidence 457999999998743
No 23
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.88 E-value=7.7 Score=25.51 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=18.1
Q ss_pred CchhhhcCCCceeccCCCccchhcccccccc
Q 012674 424 ETNECLERNGGCWQDTQANITACKVYHRNFR 454 (458)
Q Consensus 424 ~~~~c~~~~~~c~~~~~~~~~~c~~~~~~~~ 454 (458)
+.|||+.++..|- + ..|.+|.-||.
T Consensus 2 DidEC~~~~~~C~-----~-~~C~Nt~Gsy~ 26 (44)
T d1lmja1 2 DIDECRISPDLCG-----R-GQCVNTPGDFE 26 (44)
T ss_dssp CCCTTTTCSSTTT-----T-SCEEEETTEEE
T ss_pred cccccCCCCCCCC-----C-CEeEcCCCCeE
Confidence 4689988888883 1 34888887774
No 24
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.51 E-value=5.7 Score=27.22 Aligned_cols=10 Identities=60% Similarity=1.381 Sum_probs=8.1
Q ss_pred hhcCCCceec
Q 012674 428 CLERNGGCWQ 437 (458)
Q Consensus 428 c~~~~~~c~~ 437 (458)
|..+||||.+
T Consensus 2 C~~~NGGC~h 11 (53)
T d2bz6l1 2 CVNENGGCEQ 11 (53)
T ss_dssp TTSGGGGCSS
T ss_pred CCCCCCCCcC
Confidence 7788999873
No 25
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL {Thermoplasma acidophilum [TaxId: 2303]}
Probab=26.04 E-value=1.2e+02 Score=22.52 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=29.9
Q ss_pred EeHHHHHHHHHHHHcCCeEEEEEeeccCCCCCCC-ceeEEEEecc
Q 012674 164 IDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQ-RVEYELWTNS 207 (458)
Q Consensus 164 Is~~dG~~L~~~l~~g~~V~v~l~~~~~~p~pd~-~Ve~~~w~~s 207 (458)
=.+.-|..|+..|.+.+.|.+.-+ .+|||-. .+....=++.
T Consensus 22 EdHTlgn~L~~~L~~~~~V~fagY---~ipHPl~~~~~l~I~t~~ 63 (99)
T d1xppa_ 22 YDNTLLRTLVEEILKDDQVDEARY---YIKHPVIDNPQIYVRVKS 63 (99)
T ss_dssp CCHHHHHHHHHHHTTCTTEEEEEE---ECSSTTTSCCEEEEEESS
T ss_pred CCchHHHHHHHHHhcCCCeeEEEE---ecCCcccCCeEEEEEeCC
Confidence 345779999999999888887777 4789874 4555554443
No 26
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.52 E-value=6.6 Score=25.43 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=18.5
Q ss_pred chhhhcCCCceeccCCCccchhcccccccc
Q 012674 425 TNECLERNGGCWQDTQANITACKVYHRNFR 454 (458)
Q Consensus 425 ~~~c~~~~~~c~~~~~~~~~~c~~~~~~~~ 454 (458)
.|||+.+++.|-. ..|.+|..+|+
T Consensus 2 idEC~~~~~~C~~------~~C~Nt~Gsy~ 25 (42)
T d1lmja2 2 IDECQRDPLLCRG------GVCHNTEGSYR 25 (42)
T ss_dssp CCHHHHCSSTTTT------SEEEEETTEEE
T ss_pred ccccCCCCCCCCC------CEeECCCCCeE
Confidence 5899999888831 26999987775
No 27
>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=21.78 E-value=39 Score=29.28 Aligned_cols=51 Identities=18% Similarity=0.140 Sum_probs=33.7
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCceEEeeEEEEcCeeeccccChhHHHHHHhc
Q 012674 353 DPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAICA 407 (458)
Q Consensus 353 ds~~~~~N~iL~~e~~~q~~~~~~~~v~~lPtl~IN~~~yrG~L~~~~v~~aICa 407 (458)
|+++...++-..+.+..+.+. ..++-|.++|||+..+.--+...+..+|=+
T Consensus 53 D~fa~~~~t~RQ~~Y~~~~g~----~~vyTPq~vvnG~~~~~gs~~~~~~~~i~~ 103 (225)
T d2axoa1 53 DSLASKENTERQYGYMRALGR----NGVYTPQAILNGRDHVKGADVRGIYDRLDA 103 (225)
T ss_dssp CTTCCHHHHHHHHHHHHHTTC----SCCCSSEEEETTTEEEETTCHHHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHhcCC----CCCCceeEEEeCcccccccCHHHHHHHHHH
Confidence 666655554444333333332 235669999999999888888888888743
No 28
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.20 E-value=9.1 Score=25.86 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=15.2
Q ss_pred hhhcCCCceeccCCCccchhcccccccc
Q 012674 427 ECLERNGGCWQDTQANITACKVYHRNFR 454 (458)
Q Consensus 427 ~c~~~~~~c~~~~~~~~~~c~~~~~~~~ 454 (458)
-|..+||||.+ -|.+|..||+
T Consensus 2 ~C~~~NGgC~h-------~C~n~~g~~~ 22 (51)
T d2p3ua1 2 LCSLDNGDCDQ-------FCHEEQNSVV 22 (51)
T ss_dssp GGGTGGGGCSS-------EEEEETTEEE
T ss_pred ccCCCCCCccc-------EeecCCCCeE
Confidence 47889999973 4777776663
No 29
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.05 E-value=9.3 Score=24.77 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=18.6
Q ss_pred CchhhhcCCCceeccCCCccchhcccccccc
Q 012674 424 ETNECLERNGGCWQDTQANITACKVYHRNFR 454 (458)
Q Consensus 424 ~~~~c~~~~~~c~~~~~~~~~~c~~~~~~~~ 454 (458)
+.|||+.+++.|- + ..|.+|..||.
T Consensus 2 DinEC~~~~~~c~-~-----~~C~Nt~Gsy~ 26 (43)
T d1uzka2 2 DIDECQELPGLCQ-G-----GKCINTFGSFQ 26 (43)
T ss_dssp ECCHHHHCGGGGB-T-----SEEEECSSCEE
T ss_pred CcccccCCCCCcC-C-----CEEECCCCCeE
Confidence 4689998888883 1 24999988875
Done!