BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012675
(458 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1
SV=1
Length = 1282
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/407 (52%), Positives = 276/407 (67%), Gaps = 17/407 (4%)
Query: 15 NEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFD 74
E D +K E++ + Q+N AE D D+ R++ EGFR G Y+R+EI +VP E V+ FD
Sbjct: 843 GESTYFDDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFD 902
Query: 75 PCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIED 134
P +P+++GG+G E NVGY+Q+RLK+HRW+ KK+LKSRDPII S+GWRRFQTIP+Y IED
Sbjct: 903 PHYPIILGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPIIFSVGWRRFQTIPLYYIED 961
Query: 135 RSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEV 194
+GR R+LKYTP+HMHC A FWGP+ P TG +A+Q++S FRIAAT VVL+ + +
Sbjct: 962 HNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSI 1021
Query: 195 KIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGN 254
KI KK+KL G+P KIFK T+ IK MF S LEVA+ EG +RTVSGIRGQ+KKA +
Sbjct: 1022 KIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAP--- 1078
Query: 255 QPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQP--RDKIWQG 312
EG R +FED++LMSDIVFMR W V IP FYNP+T+ L+P W G
Sbjct: 1079 ----------EGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSG 1128
Query: 313 MKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPK-DIPGRK 371
M+T +LR H + + NK+SLYKPI R + FN L IPK+LQ ALPF++KPK K
Sbjct: 1129 MRTTGQLRLAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGK 1188
Query: 372 RPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKE 418
P R AV+ EPHERK+ L L + ++KMKK K ++ KE
Sbjct: 1189 VPKDRRRPAVIREPHERKILALLDALSTVHSQKMKKAKEQRHLHNKE 1235
>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bms1 PE=1 SV=2
Length = 1121
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/431 (47%), Positives = 274/431 (63%), Gaps = 17/431 (3%)
Query: 24 KEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGG 83
KE+I + +N D+D +R E+EG+R GTY+R+ I+DVPFE VE+FD +PV+VGG
Sbjct: 692 KEKIARQLVINREAFEDMDPESRAEIEGYRAGTYVRIVINDVPFEFVEHFDSRYPVVVGG 751
Query: 84 IGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLK 143
+ EQ G +QVR+KRHRW HKK+LK+ DP+I S+GWRRFQ+IPVY+I D R+RMLK
Sbjct: 752 LLPNEQRYGLVQVRIKRHRW-HKKILKTNDPLIFSMGWRRFQSIPVYSISDSRTRNRMLK 810
Query: 144 YTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQA---SFRIAATAVVLEFNHEVKIKKKI 200
YTPEHMHC TF+GP P +G AVQ+++N+ A SFRIAAT VL + I KK+
Sbjct: 811 YTPEHMHCFGTFYGPFVAPNSGFCAVQSVANSFAKAGSFRIAATGSVLNIDQSTDIVKKL 870
Query: 201 KLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKG 260
KL G P KIFK TA IK MF+S LEVA+ EG +RTVSGIRGQVKKA +E G+
Sbjct: 871 KLTGVPYKIFKNTAFIKKMFSSPLEVAKFEGANIRTVSGIRGQVKKAVDQEHGH------ 924
Query: 261 GQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELR 320
R TFED+ILMSDIVF+R W V++ +F +T L+ W GM+ E+R
Sbjct: 925 -------FRATFEDKILMSDIVFLRAWYPVQVRKFCTMVTNLLETDKTEWNGMRLTGEVR 977
Query: 321 REHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRA 380
E L P+ NS Y+ I R R FNPL +P SLQA LPF S+ K + R +P +R
Sbjct: 978 HELGLKTPLRPNSQYQEIVRPSRHFNPLKVPASLQAQLPFNSRQKALRPRSKPTYMQKRT 1037
Query: 381 VVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRE 440
V++ ERKV L Q++ + +K KRK K+ + K+EQ +++REE+ E
Sbjct: 1038 VLLNAEERKVRDLLQKVMTLHTDKEAKRKAKKAAEHERYHKRMQKEEQAYIEKKREEKAE 1097
Query: 441 RYREQDKLMKK 451
+ + K +++
Sbjct: 1098 WFAQHGKRLRQ 1108
>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1
Length = 1183
Score = 329 bits (843), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 176/426 (41%), Positives = 264/426 (61%), Gaps = 16/426 (3%)
Query: 24 KEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGG 83
K +I + ++N E ++ R +EGF+ G+Y+R+ VP E V+ F+P P+++GG
Sbjct: 755 KAKISKQLEINNIEYQEMTPEQRQRIEGFKAGSYVRIVFEKVPMEFVKNFNPKFPIVMGG 814
Query: 84 IGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLK 143
+ E G ++ RL+RHRW HKK+LK+ DP+++S+GWRRFQT+P+Y D R RMLK
Sbjct: 815 LLPTEIKFGIVKARLRRHRW-HKKILKTNDPLVLSLGWRRFQTLPIYTTTDSRTRTRMLK 873
Query: 144 YTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQAS--FRIAATAVVLEFNHEVKIKKKIK 201
YTPEH +C A F+GPL P T VQ ++N+ FRIAAT +V E + ++I KK+K
Sbjct: 874 YTPEHTYCNAAFYGPLCSPNTPFCGVQIVANSDTGNGFRIAATGIVEEIDVNIEIVKKLK 933
Query: 202 LVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGG 261
LVG+P KIFK TA IKDMF+S +EVA+ EG +++TVSGIRG++K+A ++P
Sbjct: 934 LVGFPYKIFKNTAFIKDMFSSAMEVARFEGAQIKTVSGIRGEIKRAL-----SKP----- 983
Query: 262 QPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRR 321
EG R FED+ILMSDIV +R W V + +FYNP+T+ L W+G++ ++R
Sbjct: 984 ---EGHYRAAFEDKILMSDIVILRSWYPVRVKKFYNPVTSLLLKEKTEWKGLRLTGQIRA 1040
Query: 322 EHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAV 381
NL P N +S Y I R R FN L +PK++Q LPF+S+ + +K+ +RAV
Sbjct: 1041 AMNLETPSNPDSAYHKIERVERHFNGLKVPKAVQKELPFKSQIHQMKPQKKKTYMAKRAV 1100
Query: 382 VMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRER 441
V+ E+K Q++ I K KRK ++ ++KE + AK E+ +R +E+++E
Sbjct: 1101 VLGGDEKKARSFIQKVLTISKAKDSKRKEQKASQRKERLKKLAKMEEEKSQRDKEKKKEY 1160
Query: 442 YREQDK 447
+ + K
Sbjct: 1161 FAQNGK 1166
>sp|A8MV67|YO021_HUMAN Putative BMS1-like protein ENSP00000383088 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/101 (64%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 57 YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 116
Y+R+EI +VP E V+ DP +P+++GG+G E NVGY+Q+RLK+HRW +KK+LKSRDPII
Sbjct: 2 YVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVQMRLKKHRW-YKKILKSRDPII 60
Query: 117 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWG 157
S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FW
Sbjct: 61 FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWA 101
>sp|A8MXU9|YO022_HUMAN Putative BMS1-like protein ENSP00000383048 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 83/101 (82%), Gaps = 1/101 (0%)
Query: 57 YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 116
Y+R+EI +VP E V+ DP +P+++GG+G E NVGY+++ LK+HRW +KK+LKSRDPII
Sbjct: 2 YVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVEMHLKKHRW-YKKILKSRDPII 60
Query: 117 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWG 157
S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FW
Sbjct: 61 FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWA 101
>sp|A8MTN0|YI027_HUMAN Putative BMS1-like protein ENSP00000382360 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 57 YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 116
Y+R+EI +VP E V+ FDP +P+++GG+G E NVG++Q+RLK+HRW +KK+LKS+DPII
Sbjct: 2 YVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGHVQMRLKKHRW-YKKILKSQDPII 60
Query: 117 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWG 157
S+GWRRFQTI +Y IED +GR R+LKYTP+H+HC A FW
Sbjct: 61 FSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIHCGAAFWA 101
>sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1
PE=2 SV=1
Length = 803
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 122/256 (47%), Gaps = 17/256 (6%)
Query: 43 EVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHR 102
E+ E EG G Y+ + + DVP +VEYF P++ + EQ + + + + R+
Sbjct: 542 EIEEKEAEGAEVGWYVTLHVSDVPVSVVEYFRQGAPLIAFSLLPYEQKMSVLNMVVSRNP 601
Query: 103 WWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPP 162
+ + +K+++ +I G+RRF+ P+++ + +H+ ++ + T + P+ P
Sbjct: 602 G-NTEPVKAKEELIFHCGFRRFRASPLFSQHTAADKHKFQRFLTADAAFVVTVFAPITFP 660
Query: 163 QTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTS 222
V+ + N S + AT + + + + K++ L G+P KIF K A+++ MF +
Sbjct: 661 PASVLLFKQRRNGMHS--LIATGHLFSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFN 718
Query: 223 DLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIV 282
+V + E+RT G RG + KE +G G +C+F+ ++ D V
Sbjct: 719 REDVMWFKPVELRTKWGRRGHI----KEPLGTH----------GHMKCSFDGKLKSQDTV 764
Query: 283 FMRGWADVEIPRFYNP 298
M + V Y+P
Sbjct: 765 LMNLYKRVFPKWTYDP 780
>sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1
PE=2 SV=1
Length = 815
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 123/261 (47%), Gaps = 21/261 (8%)
Query: 50 EGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVL 109
EG G Y+ + I VP ++E+F P+++ + EQ + M + ++RH + + +
Sbjct: 561 EGAMVGWYVTVHISAVPVSVMEHFKHGLPLVLCSLLPHEQKMSVMNMLVRRHPG-NNEPI 619
Query: 110 KSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAV 169
K+++ +I G+RRF+ P+++ + +H+ ++ + T + P+ P V+
Sbjct: 620 KAKEELIFHCGFRRFRASPLFSQHSSADKHKSERFLRSDTSVVVTVYAPITFPPASVLVF 679
Query: 170 QNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQC 229
+ N + AT +L N + + K+I L G+P KI K+TA+++ MF + +V
Sbjct: 680 KQRYNGMQD--LVATGSLLNVNPDRIVIKRIVLSGHPFKIMKRTAVVRYMFFNREDVLWF 737
Query: 230 EGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWAD 289
+ E+RT G RG + KE +G G +C F+ ++ D V M +
Sbjct: 738 KPVELRTKWGRRGHI----KEPLGTH----------GHMKCHFDGQLKSQDTVLMNLYKR 783
Query: 290 VEIPRFYNPLTTALQPRDKIW 310
V ++P PR W
Sbjct: 784 VYPKWTFDPYV----PRPVTW 800
>sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster
GN=CG7338 PE=1 SV=1
Length = 814
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 26/243 (10%)
Query: 48 ELEGFRTGTYLRMEIHDVP------FEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRH 101
E EG G Y+ + + +VP F+ + D ++V G+ E + M V L+R
Sbjct: 551 EFEGVLPGLYVTLYVINVPESRWNAFKSAQLMDN---IIVYGMLPHEHQMCVMNVVLQRM 607
Query: 102 RWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAP 161
+ LKS++ +I+ G+RRF P+Y+ +H+ +Y + ATF+ P+
Sbjct: 608 PD-SEVPLKSKEQLIIQCGYRRFVVNPIYSQHTNGDKHKFERYFRPYETVCATFYAPIQF 666
Query: 162 PQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFT 221
P V+A + N ++ + A +L N + + K++ L G+P +I +K+A I+ MF
Sbjct: 667 PPAPVLAFK--VNPDSTLALVARGRLLSCNPDRIVLKRVVLSGHPMRINRKSASIRYMFF 724
Query: 222 SDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDI 281
+V + ++RT G G + KE +G G +C F+ ++ D
Sbjct: 725 YKEDVEYFKPVKLRTKCGRLGHI----KESLGTH----------GHMKCYFDGQLRSYDT 770
Query: 282 VFM 284
FM
Sbjct: 771 AFM 773
>sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1
PE=1 SV=1
Length = 804
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 95/190 (50%), Gaps = 16/190 (8%)
Query: 109 LKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVA 168
+K+++ +I G+RRF+ P+++ + +H++ ++ M +AT + P+ P V+
Sbjct: 608 VKAKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLL 667
Query: 169 VQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQ 228
+ SN S + AT ++ + + + K++ L G+P KIF K A+++ MF + +V
Sbjct: 668 FKQKSNGMHS--LIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLW 725
Query: 229 CEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWA 288
+ E+RT G RG + KE +G G +C+F+ ++ D V M +
Sbjct: 726 FKPVELRTKWGRRGHI----KEPLGTH----------GHMKCSFDGKLKSQDTVLMNLYK 771
Query: 289 DVEIPRFYNP 298
V Y+P
Sbjct: 772 RVFPKWTYDP 781
>sp|Q5R434|TSR1_PONAB Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1
PE=2 SV=1
Length = 805
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 121/248 (48%), Gaps = 17/248 (6%)
Query: 51 GFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLK 110
G G Y+ + + +VP +VE F P++ + EQ + + + ++R + + +K
Sbjct: 552 GAEVGCYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPG-NTEPVK 610
Query: 111 SRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQ 170
+++ +I G+RRF+ P+++ + +H++ ++ M +AT + P+ P V+ +
Sbjct: 611 AKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFK 670
Query: 171 NLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCE 230
SN S + AT ++ + + + K++ L G+P K+F K A+++ MF + +V +
Sbjct: 671 QKSNGMHS--LIATGHLMSVDPDRMVIKRVVLSGHPLKMFTKMAVVRYMFFNREDVLWFK 728
Query: 231 GKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADV 290
E+RT G RG + KE +G G +C+F ++ D V M + V
Sbjct: 729 PVELRTKWGRRGHI----KEPLGTH----------GHMKCSFNGKLKSQDTVLMNLYKRV 774
Query: 291 EIPRFYNP 298
Y+P
Sbjct: 775 FPKWTYDP 782
>sp|O13956|TSR1_SCHPO Ribosome biogenesis protein tsr1 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23H4.15 PE=3 SV=1
Length = 783
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 22/235 (9%)
Query: 55 GTYLRMEIHDVPFEMVEYFD-PCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRD 113
G + +E+ +VP E+ EY++ P + +++ + E + Q +H + + + +S++
Sbjct: 545 GKAVYVELRNVPIEIFEYYNKPWNLLVLYSLLQYENKLTVSQFTAMQHSEYEEPI-ESKE 603
Query: 114 PIIVSIGWRRFQTIPVYAIEDRSGRHRML----KYTPEHMHCLATFWGPLAPPQTGVVAV 169
+++ IG RRF P+Y+ SG L +Y P +A+ P+ ++
Sbjct: 604 ELLLQIGPRRFMVRPLYSDPTASGASNNLQKYHRYLPPKQAVIASVISPIVFGNVPIIMF 663
Query: 170 QNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQC 229
+ S+N S R+AAT + + I K+ L G+P K+ KK I+ MF + +V
Sbjct: 664 KKSSDN--SLRLAATGSYVNCDTNSVIAKRAVLTGHPFKVHKKLVTIRYMFFNPEDVIWF 721
Query: 230 EGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM 284
+ ++ T G G + KE +G G + TF +I + D V M
Sbjct: 722 KPIQLFTKQGRTGYI----KEPLGTH----------GYFKATFNGKITVQDTVAM 762
>sp|Q54YA7|TSR1_DICDI Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium
discoideum GN=tsr1 PE=3 SV=1
Length = 826
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 57 YLRMEIHDVPFEMVEYFDPC---HPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRD 113
Y+R+ + + P ++VE P + G+ E + + +++H+ + + V +S++
Sbjct: 592 YVRIHLVNGPKQLVERNTTAITTKPEVAVGLYRYENKISLLHFSVEKHKSYEETV-RSKE 650
Query: 114 PIIVSIGWRRFQTIPVYAIED-RSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNL 172
+ GWR+F T P+Y+I + + K+ + +AT +GP+ P ++ +
Sbjct: 651 EVYFHFGWRKFSTSPIYSISSPNCDKQKFEKFLLPARNTMATIYGPITYPPAPLL----I 706
Query: 173 SNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCK-IFKKTALIKDMFTSDLEVAQCEG 231
N + + AT + N + I K+I L G K I KK +KDMF ++ +
Sbjct: 707 FNGKDCNELVATGYLSSVNPDRIICKRIILTGVIAKSISKKFVTVKDMFYYPEDINWFKK 766
Query: 232 KEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADV 290
E+ T G G + KE +G G +C F+ + D V M + V
Sbjct: 767 VELYTKMGRVGHI----KEPLGTH----------GRMKCQFDGTMNQQDTVCMNLYKRV 811
>sp|Q61WR2|TSR1_CAEBR Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae
GN=tag-151 PE=3 SV=1
Length = 788
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 111/247 (44%), Gaps = 19/247 (7%)
Query: 39 NDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRL 98
ND+D + + F G + + I +VP ++E + +++ + EQ + + + L
Sbjct: 517 NDVDAGDAVIDKKF-NGVFASVYIENVPVSVMEAYKETKNLVLFQLLPHEQKMSILNMVL 575
Query: 99 KRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGP 158
K+H + I +G+R+F+ V + + ++ ++ P +AT + P
Sbjct: 576 KKHPSCTVPIGSEDQKFIFYVGFRQFEAHAVLSSNTPGDKFKLERFMPTEKTFVATVYAP 635
Query: 159 LA-PPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIK 217
+ P T + Q+ Q + AT VL+ N + + K+ L G+P KI ++ +++
Sbjct: 636 ITFNPATVLCFRQDDKGRQ---ELVATGSVLDTNPDRIVLKRTVLSGHPYKINRRAVVVR 692
Query: 218 DMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 277
MF + ++ + E+ T SG RG +K+A +G G +C F+ ++
Sbjct: 693 YMFFNREDIDWFKPVELYTPSGRRGHIKEA----VGTH----------GHMKCRFDQQLN 738
Query: 278 MSDIVFM 284
D V +
Sbjct: 739 AQDSVML 745
>sp|Q19329|TSR1_CAEEL Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans
GN=tag-151 PE=3 SV=1
Length = 785
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 113/253 (44%), Gaps = 19/253 (7%)
Query: 55 GTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRD- 113
G + + I +VP ++E + +++ + E + + + LK+H + ++
Sbjct: 528 GAFASVFIENVPVAVLEAYKDAKNLVLFQLLPHEHKMSVLNMVLKKHPSCTIPITSDQNQ 587
Query: 114 PIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLA-PPQTGVVAVQNL 172
I +G+R+F+ V++ + ++ ++ P +AT + P+ P T + Q+
Sbjct: 588 KFIFYVGFRQFEANAVFSSNTPGDKFKLERFMPTEKTFVATVYAPITFNPATVLCFRQDD 647
Query: 173 SNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGK 232
Q + AT +L+ N + + K+ L G+P KI ++ +++ MF + ++ +
Sbjct: 648 KGRQ---ELVATGSILDSNPDRIVLKRTVLAGHPYKINRRAVVVRYMFFNREDIEWFKPV 704
Query: 233 EVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEI 292
E+ T SG RG +K+A +G G +C F+ ++ D V + + V
Sbjct: 705 ELYTPSGRRGHIKEA----VGTH----------GNMKCRFDQQLNAQDSVMLNLYKRVFP 750
Query: 293 PRFYNPLTTALQP 305
Y+ +L P
Sbjct: 751 VWNYSIFNRSLNP 763
>sp|Q07381|TSR1_YEAST Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1
Length = 788
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 95/234 (40%), Gaps = 18/234 (7%)
Query: 54 TGTYLRMEIHDVPFEMVEYFDPCHPVL-VGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSR 112
G +RM I F + + DP + V G+ L E + L+R + K V S+
Sbjct: 553 AGDRIRMFIRFPKFLLEKIQDPKQLLFAVYGLLLHEHKNAVVNFSLQRWEQYDKPV-PSQ 611
Query: 113 DPIIVSIGWRRFQTIPVYAIEDRS--GRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQ 170
+PI+V G RR+ P+++ S H+ ++ +AT P+ Q+ + +
Sbjct: 612 EPIVVQYGVRRYTIQPLFSQGSNSPNNVHKYERFLHPDTVSVATCIAPVDFTQSPAIFFK 671
Query: 171 NLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCE 230
+ + + L +H + K+ L G+P + K ++ MF +V +
Sbjct: 672 PSPTDAKNIELIGHGTFLNADHSRILAKRAILTGHPFRFHKTVVTVRYMFFRPEDVEWFK 731
Query: 231 GKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM 284
+ T SG G + KE +G G + TF+ ++ D+V M
Sbjct: 732 SIPLFTKSGRSGFI----KESLGTH----------GYFKATFDGKLSAQDVVAM 771
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,179,876
Number of Sequences: 539616
Number of extensions: 7322901
Number of successful extensions: 42694
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 439
Number of HSP's that attempted gapping in prelim test: 35208
Number of HSP's gapped (non-prelim): 5251
length of query: 458
length of database: 191,569,459
effective HSP length: 121
effective length of query: 337
effective length of database: 126,275,923
effective search space: 42554986051
effective search space used: 42554986051
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)