Query 012675
Match_columns 458
No_of_seqs 189 out of 479
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5192 BMS1 GTP-binding prote 100.0 1E-111 2E-116 883.2 17.5 415 10-454 663-1077(1077)
2 PF04950 DUF663: Protein of un 100.0 4.6E-95 1E-99 722.0 7.5 256 17-290 42-297 (297)
3 KOG1980 Uncharacterized conser 100.0 8.4E-70 1.8E-74 572.9 17.5 228 54-298 523-750 (754)
4 COG5177 Uncharacterized conser 100.0 3.7E-54 8E-59 446.2 5.7 225 52-292 533-760 (769)
5 KOG1951 GTP-binding protein AA 99.5 2.4E-14 5.2E-19 125.6 9.5 101 349-449 1-103 (115)
6 KOG0461 Selenocysteine-specifi 95.6 0.011 2.5E-07 62.0 3.9 221 37-279 236-493 (522)
7 KOG1029 Endocytic adaptor prot 88.4 0.85 1.8E-05 52.2 6.0 30 354-383 304-337 (1118)
8 COG2451 Ribosomal protein L35A 54.0 35 0.00075 30.2 5.5 84 179-288 5-97 (100)
9 PTZ00041 60S ribosomal protein 47.4 51 0.0011 30.1 5.7 85 177-287 16-116 (120)
10 cd03706 mtEFTU_III Domain III 43.4 1.6E+02 0.0034 24.4 7.8 71 106-190 21-93 (93)
11 PF01247 Ribosomal_L35Ae: Ribo 43.2 40 0.00086 29.6 4.3 54 210-277 18-84 (95)
12 PRK04337 50S ribosomal protein 39.8 53 0.0011 28.5 4.4 53 211-277 19-76 (87)
13 PRK00247 putative inner membra 39.7 1.9E+02 0.0042 31.6 9.7 33 382-416 316-348 (429)
14 PRK10512 selenocysteinyl-tRNA- 39.1 4E+02 0.0086 30.2 12.4 70 105-194 274-344 (614)
15 TIGR03680 eif2g_arch translati 36.7 5.3E+02 0.012 27.2 13.0 64 106-187 341-405 (406)
16 PTZ00266 NIMA-related protein 36.4 1.5E+02 0.0033 35.8 8.9 7 93-99 146-152 (1021)
17 KOG1029 Endocytic adaptor prot 35.6 2.1E+02 0.0046 33.9 9.5 31 386-416 329-359 (1118)
18 COG1866 PckA Phosphoenolpyruva 34.9 28 0.00062 38.3 2.6 104 84-208 147-257 (529)
19 KOG1144 Translation initiation 33.4 2.4E+02 0.0052 33.5 9.5 21 391-411 217-237 (1064)
20 PF15236 CCDC66: Coiled-coil d 32.3 4.5E+02 0.0098 25.1 10.6 71 372-444 30-105 (157)
21 PTZ00266 NIMA-related protein 32.1 2.9E+02 0.0062 33.5 10.2 6 215-220 274-279 (1021)
22 PRK04000 translation initiatio 31.7 6.6E+02 0.014 26.7 13.5 64 106-187 346-410 (411)
23 KOG4364 Chromatin assembly fac 30.8 2.4E+02 0.0052 32.8 8.8 22 342-363 221-242 (811)
24 KOG2891 Surface glycoprotein [ 27.3 3E+02 0.0064 29.0 8.2 38 395-432 334-371 (445)
25 cd03708 GTPBP_III Domain III o 24.5 3.6E+02 0.0079 21.7 6.9 68 106-189 16-86 (87)
26 PF00970 FAD_binding_6: Oxidor 22.1 3.3E+02 0.0071 22.1 6.3 63 50-124 28-97 (99)
27 cd07691 Ig_CD3_gamma_delta Imm 21.8 1.1E+02 0.0023 25.6 3.1 49 226-290 19-67 (69)
28 COG1422 Predicted membrane pro 21.5 3.7E+02 0.0081 26.7 7.3 48 399-446 68-115 (201)
29 cd06209 BenDO_FAD_NAD Benzoate 21.4 2E+02 0.0043 27.1 5.4 39 51-101 30-68 (228)
30 KOG2635 Medium subunit of clat 21.1 1.4E+02 0.0031 32.9 4.8 26 371-396 123-149 (512)
31 cd06185 PDR_like Phthalate dio 20.6 1.8E+02 0.0038 26.9 4.8 40 51-102 25-64 (211)
32 PF06658 DUF1168: Protein of u 20.6 6.5E+02 0.014 23.6 8.4 6 347-352 4-9 (142)
No 1
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-111 Score=883.19 Aligned_cols=415 Identities=35% Similarity=0.637 Sum_probs=401.3
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhhHHHhcCCCHHHHHhhcCCCCCcEEEEEEcccchhhhhccCCCCcEEEEecccccc
Q 012675 10 HCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQ 89 (458)
Q Consensus 10 ~~~~~~~~~~~~~~k~~~~~q~~~n~~ef~~~d~~~r~~~eG~~~G~YVrI~i~~vP~e~~~~fdp~~PlIvggLl~~E~ 89 (458)
++++..+.+||+..|+.+++|+.+|++||++|++++|+.+|||++|.||||+|+.||.+|+++|++.+|+|+|||||.|.
T Consensus 663 ~d~e~~d~dwy~~eK~ki~~ql~inr~e~e~M~Pe~r~~Ieg~raG~YVriv~~~vP~efv~~fn~r~piV~GGlLp~E~ 742 (1077)
T COG5192 663 GDPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEK 742 (1077)
T ss_pred cCccccccchHHHHHHHHHHHHhhhhhhhhhcCCcceeEeecccccceEEEEeccCCHHHHhhcCCCCcEEeccccchhh
Confidence 34555677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeeeeeeeeecCCcceeEEeecCCCceEEEEEEeecCCCCceEEEE
Q 012675 90 NVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAV 169 (458)
Q Consensus 90 k~~vv~~rikrhrw~~~kiLKSkDpLi~s~GwRRFqt~PIyS~~d~n~R~r~lKytp~~~~c~AtfyGPi~~~~tgvlaf 169 (458)
++|+||++|+|||| |++|||++||||||+|||||||+||||+.|+.+|+|||||||+||||.+|||||+++|||||||+
T Consensus 743 ~~giVq~rikrhrW-hKKILKTNdPlifS~GWRRFQsiPvys~~DsrTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~V 821 (1077)
T COG5192 743 EMGIVQGRIKRHRW-HKKILKTNDPLIFSVGWRRFQSIPVYSMKDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAV 821 (1077)
T ss_pred hhhhhhhHHHHhHH-HHHHhccCCCeEEEechhhhcccceeeecchhhhhhhhhcCccceeeeeeeecCccCCCCCceeE
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCeEEEEEEEEeeccCceeEEEeEEEeeeeeEEeecceEEeccCCChhhhccccCCeeeecccccceeecccc
Q 012675 170 QNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAK 249 (458)
Q Consensus 170 ~~~~~~~~~fri~atG~vl~~d~~~~IvKKlkLtG~P~KI~K~tAfIk~MF~s~lEV~~Fkga~L~TvsGiRG~IKkalg 249 (458)
|+. .++|||+|+|+|.++|.+..|||||+|+|||++|++||||||+||+|++||++|+||+|+||||+||+||.|+|
T Consensus 822 qse---~g~frv~a~g~i~dv~~~~~lvkklklvg~p~qi~qnt~fvrdmfts~lev~kfega~lk~vsglrgqvk~~~~ 898 (1077)
T COG5192 822 QSE---KGDFRVLALGTITDVNGDAKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKGPHG 898 (1077)
T ss_pred Eec---CCceEEEEeeeeEeccccHHHHhhhhhccCcHHHhhhhHhHHHhhhhhhHHHhhcccceeeeccccccccCccC
Confidence 984 46799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCeeEEEEeccccccccEEEEeceeecccCcccccccccCCCCCccccccccHHHHHHHcCCCCCC
Q 012675 250 EEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPV 329 (458)
Q Consensus 250 t~~~~~~~~~~~~~p~G~fRatFedkI~~sDiVflrlwkrV~p~~fy~pv~~~l~~~~~~W~gmrt~~elR~e~~~~~p~ 329 (458)
. +|++||.|||+|+|||||.||+|++|.+.+||+||+|||+ .|+|+|.++|||...||.+|.
T Consensus 899 k--------------~g~yra~fe~kmlmsdii~lr~~~pv~v~r~~~pv~~ll~----~wrglr~~~eir~sl~l~~~~ 960 (1077)
T COG5192 899 K--------------NGEYRAVFEGKMLMSDIITLRCFVPVEVHRIFIPVDNLLG----KWRGLRRLHEIRESLGLTHSY 960 (1077)
T ss_pred C--------------CccchheeccchhhhheeeEEeeeeeEEEEeeccHHHHHH----HHhhhHHHHHHHHHhCCCCCC
Confidence 8 9999999999999999999999999999999999999996 599999999999999999999
Q ss_pred CCCCCCcccCCCCCCCCCCCCChhhHhhCCCCCCCCCCCCCCCccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 012675 330 NKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRK 409 (458)
Q Consensus 330 ~~dS~Y~~i~r~~r~f~~l~iPk~lq~~LPf~~kpk~~~~~~~~~~~~~ravv~~~~ekk~~~l~~~l~ti~~~k~~k~~ 409 (458)
++||.|-.+||-.++||.+.+|+++|+.|||+ +++.+++.+|++++-|.|.+....+|..-++-+-|..+++
T Consensus 961 ~p~~~~~~~e~~~~~~~~~~~pr~ie~~lp~~--------kr~~~~~srr~~~~~~~e~r~k~~ik~~i~~~r~kd~~~k 1032 (1077)
T COG5192 961 APQNDSSSEEMGYGAEEDYSLPREIESKLPLD--------KRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEK 1032 (1077)
T ss_pred CCCccchhhhhhccccccccCcHhHHhhCCcc--------hhhhhheeeeeeccCChhhhHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999999999999999999 3455789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012675 410 LKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIRR 454 (458)
Q Consensus 410 ~k~~~~~~~~~~~~~k~e~~~~~~~k~~~k~~~r~~~k~~~~~~~ 454 (458)
++++..++++.++.+|.|+++.+|.++.+++.|.+.+|++-+|.+
T Consensus 1033 e~~~s~~r~k~~~i~k~e~er~qr~r~~~~d~~~e~~kkr~kk~r 1077 (1077)
T COG5192 1033 ERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077 (1077)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 999999999999999999999999999999999999999766643
No 2
>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.; PDB: 1WB1_D 1WB3_B 1WB2_A.
Probab=100.00 E-value=4.6e-95 Score=721.97 Aligned_cols=256 Identities=47% Similarity=0.783 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHHHHHhhHHHhcCCCHHHHHhhcCCCCCcEEEEEEcccchhhhhccCCCCcEEEEecccccceeeEEEE
Q 012675 17 IGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQV 96 (458)
Q Consensus 17 ~~~~~~~k~~~~~q~~~n~~ef~~~d~~~r~~~eG~~~G~YVrI~i~~vP~e~~~~fdp~~PlIvggLl~~E~k~~vv~~ 96 (458)
..+|+....+..++..+|.. ++|++++.+.+|+.+|+||+|+|++||++++++|++++||||||||+||+++||||+
T Consensus 42 ~ri~~f~n~~~~k~~~~~~~---~~~~~~~~~~~g~~~G~YVrI~i~~vP~~~~~~~~~~~Plil~gLl~~E~k~svv~~ 118 (297)
T PF04950_consen 42 SRIFQFENFKRTKKRALKEA---ELDEEEREQEEGVRPGTYVRIEISNVPCEFVENFDPSYPLILGGLLPHEQKMSVVNF 118 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44566666666666666666 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccccccccCCcEEEEEeeeeeeeeeeeeeecCCcceeEEeecCCCceEEEEEEeecCCCCceEEEEEeccCCC
Q 012675 97 RLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQ 176 (458)
Q Consensus 97 rikrhrw~~~kiLKSkDpLi~s~GwRRFqt~PIyS~~d~n~R~r~lKytp~~~~c~AtfyGPi~~~~tgvlaf~~~~~~~ 176 (458)
+|+||+| |++||||+||||||||||||||+||||++++|+||||+||+|+||||+||||||++|||||||+|++.++..
T Consensus 119 ~ikrh~~-~~~~lkSkd~li~~~G~Rrf~~~Pifs~~~~~~r~k~~k~~~~~~~~~at~ygPi~~~~~~vl~f~~~~~~~ 197 (297)
T PF04950_consen 119 RIKRHRW-YEKPLKSKDPLIFSCGWRRFQTIPIFSQEDNNNRHKYEKYLPEGMHCVATFYGPITFPPTPVLAFKESSNSG 197 (297)
T ss_dssp ------------------------------------------------------------------------------TT
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999976666
Q ss_pred CCeEEEEEEEEeeccCceeEEEeEEEeeeeeEEeecceEEeccCCChhhhccccCCeeeecccccceeeccccccccCCC
Q 012675 177 ASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQP 256 (458)
Q Consensus 177 ~~fri~atG~vl~~d~~~~IvKKlkLtG~P~KI~K~tAfIk~MF~s~lEV~~Fkga~L~TvsGiRG~IKkalgt~~~~~~ 256 (458)
.+|||+|||+|+++|++++|+|||+|+|||+||||+|||||+||||++||+||+||+|+|+||+||+||+||||
T Consensus 198 ~~~~l~atG~v~~~d~~~~i~Kki~L~G~P~ki~k~~a~vr~MF~~~~dv~~F~~~~l~T~~G~rG~Ik~~lgt------ 271 (297)
T PF04950_consen 198 SSFRLVATGSVLNVDPDRIIVKKIKLTGYPFKIHKRTAVVRGMFFNPEDVAWFKGAELRTKSGIRGHIKESLGT------ 271 (297)
T ss_dssp TSS-B-EEEEEEEE--GGGS-B--EEEEEEEEEESSSCEECSSSSTCCHHHHS-S--BEETTS-BEEEEE-BTT------
T ss_pred CCceEEEeeeEeCCCCcchhheeeeecCchheEECceEEhhhhcCCHHHHHhhcCCEEEeeccCCCEECeeECC------
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCeeEEEEeccccccccEEEEeceeec
Q 012675 257 KRKGGQPREGIARCTFEDRILMSDIVFMRGWADV 290 (458)
Q Consensus 257 ~~~~~~~p~G~fRatFedkI~~sDiVflrlwkrV 290 (458)
||+|||+|||+|++||||||+||+||
T Consensus 272 --------~G~fka~F~~~i~~~D~V~~~lykrV 297 (297)
T PF04950_consen 272 --------HGYFKATFEDKIKQSDIVFMRLYKRV 297 (297)
T ss_dssp --------TTBBEEEESS---SS-EEEEE-----
T ss_pred --------CCcEEEEECCcCCCCCEEEEecCCCC
Confidence 99999999999999999999999997
No 3
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.4e-70 Score=572.90 Aligned_cols=228 Identities=25% Similarity=0.404 Sum_probs=223.5
Q ss_pred CCcEEEEEEcccchhhhhccCCCCcEEEEecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeeeeeeeee
Q 012675 54 TGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIE 133 (458)
Q Consensus 54 ~G~YVrI~i~~vP~e~~~~fdp~~PlIvggLl~~E~k~~vv~~rikrhrw~~~kiLKSkDpLi~s~GwRRFqt~PIyS~~ 133 (458)
+|+||+|+|.|||.++++.|.+..+|||+|||+||++|+|+||.+++|+. |+.||||+++|||+||+|||.++|+||++
T Consensus 523 ~G~~V~v~l~nvP~~i~E~~~~~~~lvvfglL~hEhKmtV~Nfvl~r~p~-~e~Plkske~livq~G~Rrf~i~PlfSs~ 601 (754)
T KOG1980|consen 523 PGQYVRVFLRNVPVSILEAIKKQLLLVVFGLLPHEHKMTVLNFVLQRHPG-YEEPLKSKEELIVQCGFRRFDINPLFSSH 601 (754)
T ss_pred CCceEEEEeecCcHHHHHHHhhccceeeeeccchhhhheeeEEEEecCCC-CCccccccceeEEEeccceEEeccccccC
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cCCcceeEEeecCCCceEEEEEEeecCCCCceEEEEEeccCCCCCeEEEEEEEEeeccCceeEEEeEEEeeeeeEEeecc
Q 012675 134 DRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKT 213 (458)
Q Consensus 134 d~n~R~r~lKytp~~~~c~AtfyGPi~~~~tgvlaf~~~~~~~~~fri~atG~vl~~d~~~~IvKKlkLtG~P~KI~K~t 213 (458)
+.|++|||.||.|+.+..+|||||||+|+++|||+|+..++ .+.+++|||++++|||||+|+||.+|+||||||||+.
T Consensus 602 t~ndkhK~eRfl~~~~a~vaTviaPI~F~ps~vL~FK~s~~--~~~~LiAtG~~l~~dpdRiv~KRaVLsGhPfKi~kk~ 679 (754)
T KOG1980|consen 602 TPNDKHKYERFLPPDEAVVATVIAPITFGPSPVLIFKKSSD--GSLELIATGSLLNCDPDRIVAKRAVLSGHPFKIHKKY 679 (754)
T ss_pred CccchhhhhhhcCccceEEEEEEeccccCCcceEEEEeCCC--cccceeeeeeeeccCCcceeEeeeeecCCCceeeeee
Confidence 99999999999999999999999999999999999998765 4789999999999999999999999999999999999
Q ss_pred eEEeccCCChhhhccccCCeeeecccccceeeccccccccCCCCCCCCCCCCeeEEEEeccccccccEEEEeceeecccC
Q 012675 214 ALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIP 293 (458)
Q Consensus 214 AfIk~MF~s~lEV~~Fkga~L~TvsGiRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~~sDiVflrlwkrV~p~ 293 (458)
|+|||||||++||.||+|++|+|++|++||||+|||| ||+|||+|+++|+.+|+|+|+|||||||.
T Consensus 680 v~VRYMFFn~EDV~wFKpIqL~Tk~gR~GhIKEplGT--------------HG~fKc~FdgkLksqDtV~MsLYKRvfP~ 745 (754)
T KOG1980|consen 680 VVVRYMFFNREDVEWFKPIQLYTKSGRTGHIKEPLGT--------------HGYFKCYFDGKLKSQDTVMMSLYKRVFPK 745 (754)
T ss_pred EEEeeecCCHhHeeeecceeeeccccccccccccccC--------------cceeEEEecCcccccchHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ccccc
Q 012675 294 RFYNP 298 (458)
Q Consensus 294 ~fy~p 298 (458)
|-|++
T Consensus 746 ~~y~~ 750 (754)
T KOG1980|consen 746 WTYWN 750 (754)
T ss_pred ccccc
Confidence 99944
No 4
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.7e-54 Score=446.20 Aligned_cols=225 Identities=22% Similarity=0.279 Sum_probs=215.4
Q ss_pred CCCCcEEEEEEcccchhhhhcc-CCCCcEEEEecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeeeeee
Q 012675 52 FRTGTYLRMEIHDVPFEMVEYF-DPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVY 130 (458)
Q Consensus 52 ~~~G~YVrI~i~~vP~e~~~~f-dp~~PlIvggLl~~E~k~~vv~~rikrhrw~~~kiLKSkDpLi~s~GwRRFqt~PIy 130 (458)
..+|+.|||.|. +|..+++.+ +|..-|+|+|||.||++.+|.||++.||.. |+.||+|+++|++++|.|||.++|+|
T Consensus 533 a~~G~~vri~lr-~p~~l~E~~~~p~~llvvygll~yE~k~tV~nFs~~rh~e-ye~P~~s~E~~vvq~G~rr~~i~Pl~ 610 (769)
T COG5177 533 APDGQMVRIKLR-FPKFLYEGLIEPQILLVVYGLLEYEDKKTVHNFSLQRHFE-YEVPLKSEESMVVQLGHRRVDICPLI 610 (769)
T ss_pred CCCCcEEEEEEe-ccHHHHhhhcccceeeeeeehhhhcchhhhhhhhhhhhhc-ccCCCCcccceeeeeccceEEEeehh
Confidence 678999999999 999999987 566677889999999999999999999999 99999999999999999999999999
Q ss_pred eeec--CCcceeEEeecCCCceEEEEEEeecCCCCceEEEEEeccCCCCCeEEEEEEEEeeccCceeEEEeEEEeeeeeE
Q 012675 131 AIED--RSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCK 208 (458)
Q Consensus 131 S~~d--~n~R~r~lKytp~~~~c~AtfyGPi~~~~tgvlaf~~~~~~~~~fri~atG~vl~~d~~~~IvKKlkLtG~P~K 208 (458)
|... +|+-|+|.||+|+....+|||+|||.|+++|+|+|+.......+.+++|||+.+++|++++|.||.+|||||||
T Consensus 611 s~~s~s~Nn~qKy~r~l~p~~~~vas~I~Pi~Fg~spvi~fkkS~~d~~s~~l~a~g~~~n~d~~rviakrAvLtGhPFk 690 (769)
T COG5177 611 SKGSNSPNNNQKYFRRLKPLESGVASFIGPISFGLSPVIIFKKSALDELSATLLASGGMNNFDGDRVIAKRAVLTGHPFK 690 (769)
T ss_pred ccCCCCCcchHHHHhhcCccceeeeEEEcceeccCcceEEEccCccchhhhhhhhcccccccCcchhhhhhhhhcCCCcc
Confidence 9854 46789999999999999999999999999999999987666678999999999999999999999999999999
Q ss_pred EeecceEEeccCCChhhhccccCCeeeecccccceeeccccccccCCCCCCCCCCCCeeEEEEeccccccccEEEEecee
Q 012675 209 IFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWA 288 (458)
Q Consensus 209 I~K~tAfIk~MF~s~lEV~~Fkga~L~TvsGiRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~~sDiVflrlwk 288 (458)
+||+.++||||||||+||.||++++|.|++|+.|.||+|||| ||+|||||+++|..+|+|.|+||+
T Consensus 691 ~hK~~vtvryMFf~pEdV~wFk~Iqlftk~grtGfIKeplGT--------------hGyFKatF~gki~~qD~VaMSLYK 756 (769)
T COG5177 691 NHKRYVTVRYMFFSPEDVMWFKNIQLFTKRGRTGFIKEPLGT--------------HGYFKATFSGKIKSQDKVAMSLYK 756 (769)
T ss_pred cceeEEEEeeecCCHhHeeeecchhhhhhcCccceecccccC--------------cceeeEEecCcccccchhhHHHHH
Confidence 999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred eccc
Q 012675 289 DVEI 292 (458)
Q Consensus 289 rV~p 292 (458)
|+||
T Consensus 757 Rm~p 760 (769)
T COG5177 757 RMFP 760 (769)
T ss_pred Hhcc
Confidence 9996
No 5
>KOG1951 consensus GTP-binding protein AARP2 involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.4e-14 Score=125.65 Aligned_cols=101 Identities=40% Similarity=0.609 Sum_probs=96.4
Q ss_pred CCChhhHhhCCCCCCCCCCCCCCCcccccccc--ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012675 349 VIPKSLQAALPFESKPKDIPGRKRPLLENRRA--VVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKD 426 (458)
Q Consensus 349 ~iPk~lq~~LPf~~kpk~~~~~~~~~~~~~ra--vv~~~~ekk~~~l~~~l~ti~~~k~~k~~~k~~~~~~~~~~~~~k~ 426 (458)
.||++||++|||+|+|+.+.++++..++.+|| ||+.|+|+|+++++|++.|+++++..++++.+..+++++.++.++.
T Consensus 1 ~iPKalqk~LPfkskpka~~~~k~~l~~~~r~~~vv~~p~e~K~~~~~~~v~t~~~~~~qk~K~~~~~krk~~~e~k~~~ 80 (115)
T KOG1951|consen 1 MIPKALQKALPFKSKPKAAKKRKRPLQDLQRADEVVAKPRERKARAVIDAVETARSFKRQKAKKTKKKKRKEYREKKAKK 80 (115)
T ss_pred CccHHHHHhCCccccchhhccccccccchhhcchhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012675 427 EQLTRKRQREERRERYREQDKLM 449 (458)
Q Consensus 427 e~~~~~~~k~~~k~~~r~~~k~~ 449 (458)
++....+.++.+++.|+..|+.-
T Consensus 81 ~~~~~~r~~~kkr~~~kk~~k~~ 103 (115)
T KOG1951|consen 81 EEPLEQREKEKKREGPKKVGKST 103 (115)
T ss_pred hhhhhhhHHHHHHhhhcccchhH
Confidence 99999999999999998887653
No 6
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.011 Score=62.02 Aligned_cols=221 Identities=16% Similarity=0.224 Sum_probs=140.4
Q ss_pred HhcCCCHHHHH--------hhcCCCCCcEEEEEEcccchhhhhccCCCCcEEEEecccccceeeEEEEEEEecCcccccc
Q 012675 37 ELNDLDEVTRL--------ELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKV 108 (458)
Q Consensus 37 ef~~~d~~~r~--------~~eG~~~G~YVrI~i~~vP~e~~~~fdp~~PlIvggLl~~E~k~~vv~~rikrhrw~~~ki 108 (458)
||-.|.+..|+ .+..+..|..+-+.+......+++.= |+ |-..+=...-.+-..++.-++ |.++
T Consensus 236 E~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRg------i~-~~pg~Lk~~~avl~~vepI~y-fr~~ 307 (522)
T KOG0461|consen 236 EFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERG------IC-GPPGTLKSTKAVLATVEPIQY-FRKS 307 (522)
T ss_pred eecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHhcc------cc-CCCcccceeeeeeEeecchHH-Hhhh
Confidence 45555555432 23445566666666665555554431 11 111111223355577888889 9999
Q ss_pred cccCCcEEEEEeeeeeeeeeeeeeecCC---------cceeEE-eecCC-CceE-----EEEEEeecCCCCceEEEEEec
Q 012675 109 LKSRDPIIVSIGWRRFQTIPVYAIEDRS---------GRHRML-KYTPE-HMHC-----LATFWGPLAPPQTGVVAVQNL 172 (458)
Q Consensus 109 LKSkDpLi~s~GwRRFqt~PIyS~~d~n---------~R~r~l-Kytp~-~~~c-----~AtfyGPi~~~~tgvlaf~~~ 172 (458)
|+|+.-+-+++|+---...-.|..+..+ ...-++ -.+|. -.+| +.+|=-|+..|.-..++-...
T Consensus 308 i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s~~i~s~l 387 (522)
T KOG0461|consen 308 INSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEYSNPIMSAL 387 (522)
T ss_pred hhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccccCcccccHHHHhh
Confidence 9999999999999765544444432211 011112 12333 2345 667888988876322222222
Q ss_pred c--CCCCCeEEEEEEEEeeccCce----------eEEEeEEEeeeeeEEeec-ceEEeccCCChhhhccccCCeeeeccc
Q 012675 173 S--NNQASFRIAATAVVLEFNHEV----------KIKKKIKLVGYPCKIFKK-TALIKDMFTSDLEVAQCEGKEVRTVSG 239 (458)
Q Consensus 173 ~--~~~~~fri~atG~vl~~d~~~----------~IvKKlkLtG~P~KI~K~-tAfIk~MF~s~lEV~~Fkga~L~TvsG 239 (458)
. ....+-|++.+|.+.-.-+++ .|.||=-=.|+--++.+. .+.+++||--.--..-|.|-.+.+.+|
T Consensus 388 d~d~h~~~CRlAF~Gi~~~~l~~~~y~~~~LP~lrifkrK~k~G~veRv~~d~svI~~~lFK~etn~dlfvG~~v~lStG 467 (522)
T KOG0461|consen 388 DEDQHGSGCRLAFSGIFSQILPESKYNGKNLPPLRIFKRKCKKGHVERVEKDFSVICTGLFKAETNFDLFVGFQVCLSTG 467 (522)
T ss_pred hhhcCCCceEEEeeeehhhhCcccccccccCCchhhhhhhhcccchhhhhccHHHHHhhhhccccccceeeeeEEEeccC
Confidence 1 234678999999987655553 334444445555555444 356789999888888999999999999
Q ss_pred ccceeeccccccccCCCCCCCCCCCCeeEEEEeccccccc
Q 012675 240 IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMS 279 (458)
Q Consensus 240 iRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~~s 279 (458)
-+|.|-.+.|. .|.||.||-++|...
T Consensus 468 e~G~Ie~aFGq--------------sgKf~itf~~~lspe 493 (522)
T KOG0461|consen 468 ERGKIEGAFGQ--------------SGKFRITFAEKLSPE 493 (522)
T ss_pred CccceeccccC--------------cceEEEEecccCChh
Confidence 99999999998 899999999998653
No 7
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.41 E-value=0.85 Score=52.21 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=13.9
Q ss_pred hHhhCC----CCCCCCCCCCCCCccccccccccC
Q 012675 354 LQAALP----FESKPKDIPGRKRPLLENRRAVVM 383 (458)
Q Consensus 354 lq~~LP----f~~kpk~~~~~~~~~~~~~ravv~ 383 (458)
.++.|| |..|.|..-.+..-.+..+|.+++
T Consensus 304 p~kklP~~~TFEDKrkeNy~kGqaELerRRq~le 337 (1118)
T KOG1029|consen 304 PPKKLPAPVTFEDKRKENYEKGQAELERRRQALE 337 (1118)
T ss_pred ccccCCCCcchhhhhHHhHhhhhHHHHHHHHHHH
Confidence 344555 777666443333333333444333
No 8
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=54.03 E-value=35 Score=30.16 Aligned_cols=84 Identities=26% Similarity=0.353 Sum_probs=58.1
Q ss_pred eEEEEEEEEeeccCceeEEEeEEEeeeeeEEeecceEEecc-CCChhhhccccCCeeee--cc-c--ccceeeccccccc
Q 012675 179 FRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDM-FTSDLEVAQCEGKEVRT--VS-G--IRGQVKKAAKEEI 252 (458)
Q Consensus 179 fri~atG~vl~~d~~~~IvKKlkLtG~P~KI~K~tAfIk~M-F~s~lEV~~Fkga~L~T--vs-G--iRG~IKkalgt~~ 252 (458)
-|..+-|++++.--+.. -.|=+.+.||-- -.|++|...+.|-.+-= .+ | +.|.|-..-|.
T Consensus 5 ~r~~ikgv~lsyrR~k~------------~q~P~~~liKi~gv~s~~eA~~y~gk~v~yk~~~~G~Vi~G~V~R~HGn-- 70 (100)
T COG2451 5 HRLRIKGVVLSYRRSKR------------TQHPNVSLIKIEGVDSPEEAQFYLGKRVCYKYRSSGRVIKGKVVRTHGN-- 70 (100)
T ss_pred ceEEEeeEEEEEEeccc------------ccCCceEEEEEecCCCHHHHHhhhccEEEEEeCCCCcEEEEEEEEecCC--
Confidence 35556666665433322 134466777776 78999999998765543 33 5 37888888887
Q ss_pred cCCCCCCCCCCCCeeEEEEeccccc---cccEEEEecee
Q 012675 253 GNQPKRKGGQPREGIARCTFEDRIL---MSDIVFMRGWA 288 (458)
Q Consensus 253 ~~~~~~~~~~~p~G~fRatFedkI~---~sDiVflrlwk 288 (458)
.|..||.|+..+- ..+.|++.||.
T Consensus 71 ------------sGaVrarF~~~LP~qa~G~~v~v~ly~ 97 (100)
T COG2451 71 ------------SGAVRARFERNLPGQALGTSVEVKLYP 97 (100)
T ss_pred ------------cceEEEEecCCCCchhcCcEEEEEEcc
Confidence 8999999998874 46777777763
No 9
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=47.35 E-value=51 Score=30.14 Aligned_cols=85 Identities=20% Similarity=0.302 Sum_probs=54.3
Q ss_pred CCeEEEEEEEEeeccCceeEEEeEEEeeeeeEEeecceEEec-cCCChhhhccccCCeeeecc------------cccce
Q 012675 177 ASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKD-MFTSDLEVAQCEGKEVRTVS------------GIRGQ 243 (458)
Q Consensus 177 ~~fri~atG~vl~~d~~~~IvKKlkLtG~P~KI~K~tAfIk~-MF~s~lEV~~Fkga~L~Tvs------------GiRG~ 243 (458)
..-|+-+-|++++---+. -.-+-|||.|+= -.++.+|..+|-|-.+-=++ =|-|.
T Consensus 16 ~~~Rly~kgv~lgYkRg~------------~nQ~~~~aLlKieGV~~~~~a~fYlGKrvayvyka~~~~~~~k~RviwGK 83 (120)
T PTZ00041 16 KPVRLYVKAVFLGYKRSK------------VNQYPNVALLKIEGVNTREDARFYLGKRVAYVYKAKKLKNGTKFRAIWGK 83 (120)
T ss_pred CCcceEEEEEEEEecccc------------ccCCCceEEEEecCcCChhhhHhhccceEEEEEcCccccCCcceeEEEEE
Confidence 344666666665432221 123446666663 26788888888776653331 15699
Q ss_pred eeccccccccCCCCCCCCCCCCeeEEEEeccccc---cccEEEEece
Q 012675 244 VKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL---MSDIVFMRGW 287 (458)
Q Consensus 244 IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~---~sDiVflrlw 287 (458)
|..+.|. .|.+||.|...+- +++.|.+-||
T Consensus 84 VtR~HGn--------------sGvVrAkF~~nLPp~A~G~~VrVmly 116 (120)
T PTZ00041 84 ITRPHGN--------------SGVVRARFNKNLPPKAIGSRVRVFLY 116 (120)
T ss_pred EEcccCC--------------CcEEEEEeCCCCChHHcCCeEEEEEc
Confidence 9999988 8999999998764 4556655544
No 10
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=43.44 E-value=1.6e+02 Score=24.37 Aligned_cols=71 Identities=11% Similarity=-0.054 Sum_probs=44.5
Q ss_pred ccccccCCcEEEEEeeeeeeeeeeeeeecCCcceeEEeecCCCceEEEEEE--eecCCCCceEEEEEeccCCCCCeEEEE
Q 012675 106 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFW--GPLAPPQTGVVAVQNLSNNQASFRIAA 183 (458)
Q Consensus 106 ~kiLKSkDpLi~s~GwRRFqt~PIyS~~d~n~R~r~lKytp~~~~c~Atfy--GPi~~~~tgvlaf~~~~~~~~~fri~a 183 (458)
+.+|++...+.+++|-..-...- ... + + -.+..++..|.|.+. .|+...+.+-++++..+ +.+|
T Consensus 21 ~~~i~~g~~~~~~~~t~~~~~~i-~~~-~--~----~~~l~~g~~~~v~i~l~~p~~~~~g~rf~lR~~~------~tvg 86 (93)
T cd03706 21 HKPFVSNFQPQMFSLTWDCAARI-DLP-P--G----KEMVMPGEDTKVTLILRRPMVLEKGQRFTLRDGN------RTIG 86 (93)
T ss_pred CccccCCCeeEEEeccceEEEEE-ECC-C--C----CcEeCCCCEEEEEEEECCcEEEeeCCEEEEEECC------EEEE
Confidence 36899999999988875422211 111 1 1 123456778888887 88754444555555432 7999
Q ss_pred EEEEeec
Q 012675 184 TAVVLEF 190 (458)
Q Consensus 184 tG~vl~~ 190 (458)
.|.|+++
T Consensus 87 ~G~V~~~ 93 (93)
T cd03706 87 TGLVTDT 93 (93)
T ss_pred EEEEEeC
Confidence 9998763
No 11
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=43.16 E-value=40 Score=29.58 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=37.4
Q ss_pred eecceEEecc-CCChhhhccccCCeeeecc------------cccceeeccccccccCCCCCCCCCCCCeeEEEEecccc
Q 012675 210 FKKTALIKDM-FTSDLEVAQCEGKEVRTVS------------GIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRI 276 (458)
Q Consensus 210 ~K~tAfIk~M-F~s~lEV~~Fkga~L~Tvs------------GiRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI 276 (458)
+-+||.|+== -++.+|..+|.|-.+-=++ =+-|.|..+-|. .|.+||.|...+
T Consensus 18 ~~~~aLlKiegV~~~~~a~fylGKrv~yvyk~~~~~~~~k~r~iwGkV~r~HGn--------------sGvVrAkF~~nL 83 (95)
T PF01247_consen 18 HPNTALLKIEGVNTKEDAQFYLGKRVAYVYKAKNKKNGSKGRVIWGKVTRPHGN--------------SGVVRAKFKKNL 83 (95)
T ss_dssp CEEEEEEEESS-STCHHHHTTTT-EEEEEECE-SSSTTECSEEEEEEEEEESTT--------------TTEEEEEESS--
T ss_pred CCCeeEEeecCccCHHHHHhhcCcEEEEEEecccccCCCcEeEEEEEEEeEEcC--------------CCEEEEEeCCCC
Confidence 3456666643 6788999999887654332 247999999998 999999999766
Q ss_pred c
Q 012675 277 L 277 (458)
Q Consensus 277 ~ 277 (458)
-
T Consensus 84 P 84 (95)
T PF01247_consen 84 P 84 (95)
T ss_dssp S
T ss_pred C
Confidence 3
No 12
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=39.81 E-value=53 Score=28.50 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=37.2
Q ss_pred ecceEEec-cCCChhhhccccCCeee--eccc--ccceeeccccccccCCCCCCCCCCCCeeEEEEeccccc
Q 012675 211 KKTALIKD-MFTSDLEVAQCEGKEVR--TVSG--IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 277 (458)
Q Consensus 211 K~tAfIk~-MF~s~lEV~~Fkga~L~--TvsG--iRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~ 277 (458)
-|||.||= -.++.+|..+|-|-.+- .+.| |-|.|..+-|. .|.+||.|...+-
T Consensus 19 ~~~aLlkiegv~~~~~a~fylGKrv~yvyk~grviwGKItR~HGn--------------sGvVrAkF~~nLP 76 (87)
T PRK04337 19 NRQVIIKPLGVDDREEAAKLIGRKVIWKDPTGNKYVGKIVRVHGN--------------RGEVRARFKPGLP 76 (87)
T ss_pred CceEEEEEcCcCCHHHHHhhcCceEEEEeCCCCEEEEEEEeeeCC--------------CceEEEEECCCCC
Confidence 34555553 26777888888665543 3333 57999999998 8999999987663
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=39.67 E-value=1.9e+02 Score=31.56 Aligned_cols=33 Identities=12% Similarity=0.304 Sum_probs=16.2
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012675 382 VMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRK 416 (458)
Q Consensus 382 v~~~~ekk~~~l~~~l~ti~~~k~~k~~~k~~~~~ 416 (458)
+..|. ++.++-.....+++++.+..++++.+++
T Consensus 316 ~~~p~--~~~~~~~~~~~~~~~~~~~~~~~k~~~k 348 (429)
T PRK00247 316 IITPW--RAPELHAENAEIKKTRTAEKNEAKARKK 348 (429)
T ss_pred cCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 5556655555555555444444433333
No 14
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=39.13 E-value=4e+02 Score=30.19 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=44.1
Q ss_pred cccccccCCcEEEEEeeeeeeeeeeeeeecCCcceeEEeecCCCceEEEEEEeecCCC-CceEEEEEeccCCCCCeEEEE
Q 012675 105 HKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPP-QTGVVAVQNLSNNQASFRIAA 183 (458)
Q Consensus 105 ~~kiLKSkDpLi~s~GwRRFqt~PIyS~~d~n~R~r~lKytp~~~~c~AtfyGPi~~~-~tgvlaf~~~~~~~~~fri~a 183 (458)
...+|+...++.|++|=.+-...-.+ + +...|...+.-|+... +..|+. ++.+ +-+.+|
T Consensus 274 ~~~~l~~~~~~~~~~gt~~~~~~i~~-----------l----~~~~~~l~l~~p~~~~~gdr~il-r~~s----~~~tig 333 (614)
T PRK10512 274 THTPLTQWQPLHIHHAASHVTGRVSL-----------L----EDNLAELVLDTPLWLADNDRLVL-RDIS----ARNTLA 333 (614)
T ss_pred CCccCCCCCEEEEEEcccEEEEEEEE-----------c----CCeEEEEEECCcccccCCCEEEE-EeCC----CCEEEE
Confidence 34688888898888886543322222 1 2234555566887554 455555 5543 457999
Q ss_pred EEEEeeccCce
Q 012675 184 TAVVLEFNHEV 194 (458)
Q Consensus 184 tG~vl~~d~~~ 194 (458)
.|.|+++++..
T Consensus 334 Gg~Vld~~~~~ 344 (614)
T PRK10512 334 GARVVMLNPPR 344 (614)
T ss_pred EEEEcccCCcc
Confidence 99999987753
No 15
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=36.72 E-value=5.3e+02 Score=27.22 Aligned_cols=64 Identities=8% Similarity=0.173 Sum_probs=45.0
Q ss_pred ccccccCCcEEEEEeeeeeeeeeeeeeecCCcceeEEeecCCCceEEEEEEeecC-CCCceEEEEEeccCCCCCeEEEEE
Q 012675 106 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLA-PPQTGVVAVQNLSNNQASFRIAAT 184 (458)
Q Consensus 106 ~kiLKSkDpLi~s~GwRRFqt~PIyS~~d~n~R~r~lKytp~~~~c~AtfyGPi~-~~~tgvlaf~~~~~~~~~fri~at 184 (458)
+.+|+....+++.+|-.+-...-.. .++ ..|...+.-|+. ..+..++.++..+ ..+|++++
T Consensus 341 ~~~i~~g~~~~l~~gt~~~~~~v~~-~~~--------------~~~~l~l~~p~~~~~g~r~~~~~~~~---~~~~~~g~ 402 (406)
T TIGR03680 341 VEPIKTGEVLMLNVGTATTVGVVTS-ARK--------------DEIEVKLKRPVCAEEGDRVAISRRVG---GRWRLIGY 402 (406)
T ss_pred cccCCCCCEEEEEEccceEEEEEEE-cCC--------------cEEEEEECCcEEcCCCCEEEEEEecC---CceEEEEE
Confidence 4799999999999997654433332 221 236666788864 4577888887653 68999999
Q ss_pred EEE
Q 012675 185 AVV 187 (458)
Q Consensus 185 G~v 187 (458)
|.+
T Consensus 403 g~~ 405 (406)
T TIGR03680 403 GII 405 (406)
T ss_pred EEe
Confidence 986
No 16
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=36.43 E-value=1.5e+02 Score=35.76 Aligned_cols=7 Identities=29% Similarity=0.373 Sum_probs=3.5
Q ss_pred EEEEEEE
Q 012675 93 YMQVRLK 99 (458)
Q Consensus 93 vv~~rik 99 (458)
+||--||
T Consensus 146 IVHRDLK 152 (1021)
T PTZ00266 146 VLHRDLK 152 (1021)
T ss_pred ceeccCc
Confidence 5554444
No 17
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.64 E-value=2.1e+02 Score=33.89 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=22.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012675 386 HERKVHVLFQQLQLIRNEKMKKRKLKQQHRK 416 (458)
Q Consensus 386 ~ekk~~~l~~~l~ti~~~k~~k~~~k~~~~~ 416 (458)
=||+..+|+.+=+.-+.++.+|.++..+.+.
T Consensus 329 LerRRq~leeqqqreree~eqkEreE~ekke 359 (1118)
T KOG1029|consen 329 LERRRQALEEQQQREREEVEQKEREEEEKKE 359 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889998888777777766665544443
No 18
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=34.91 E-value=28 Score=38.33 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=63.9
Q ss_pred cccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeeee-eeeeecCCcceeEEeecCC-----CceEEEEEEe
Q 012675 84 IGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIP-VYAIEDRSGRHRMLKYTPE-----HMHCLATFWG 157 (458)
Q Consensus 84 Ll~~E~k~~vv~~rikrhrw~~~kiLKSkDpLi~s~GwRRFqt~P-IyS~~d~n~R~r~lKytp~-----~~~c~AtfyG 157 (458)
|-.++..++++++---+--| ...=+.|+.-++|++-=+---+-- -|.-+-..+...++-|.-+ .|||.|.+ |
T Consensus 147 l~~~~~dftvin~p~f~~~~-~~~g~~Se~~i~~n~~~~~~lIggT~YaGEMKK~~fs~mnylLP~~~i~~MHcsANv-G 224 (529)
T COG1866 147 LSTFKPDFTVINAPSFKADP-KRDGLRSETFVAFNFTERIVLIGGTWYAGEMKKGIFSVMNYLLPLKGILSMHCSANV-G 224 (529)
T ss_pred hccCCCCeEEEeCCcCCCCh-hhcccccccEEEEecccceeeeeccchhhhhhhhHHHHhhccccccccccceecccc-C
Confidence 45567788999977777778 778888888777764322111111 1222222356678888544 48999965 5
Q ss_pred ecCCCCceEEEEEeccCCCCCeEEEEEEE-EeeccCceeEEEeEEEeeeeeE
Q 012675 158 PLAPPQTGVVAVQNLSNNQASFRIAATAV-VLEFNHEVKIKKKIKLVGYPCK 208 (458)
Q Consensus 158 Pi~~~~tgvlaf~~~~~~~~~fri~atG~-vl~~d~~~~IvKKlkLtG~P~K 208 (458)
|. +...|.| -|++||. -|+.||.| +|+|---.
T Consensus 225 ~~---gdvalFF----------GLSGTGKTTLSaDp~R------~LIGDDEH 257 (529)
T COG1866 225 EK---GDVALFF----------GLSGTGKTTLSADPHR------RLIGDDEH 257 (529)
T ss_pred cC---CCeEEEE----------eccCCCcceeccCCcc------ccccCccc
Confidence 44 3344443 4778885 47999997 56675443
No 19
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=33.44 E-value=2.4e+02 Score=33.48 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012675 391 HVLFQQLQLIRNEKMKKRKLK 411 (458)
Q Consensus 391 ~~l~~~l~ti~~~k~~k~~~k 411 (458)
.+|-.+|...+.+..++.++.
T Consensus 217 ~~~qe~La~~qe~eE~qkree 237 (1064)
T KOG1144|consen 217 RAMQEALAKRQEEEERQKREE 237 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444444443333
No 20
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=32.31 E-value=4.5e+02 Score=25.08 Aligned_cols=71 Identities=18% Similarity=0.359 Sum_probs=34.5
Q ss_pred CccccccccccCCcch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012675 372 RPLLENRRAVVMEPHE-----RKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYRE 444 (458)
Q Consensus 372 ~~~~~~~ravv~~~~e-----kk~~~l~~~l~ti~~~k~~k~~~k~~~~~~~~~~~~~k~e~~~~~~~k~~~k~~~r~ 444 (458)
+.+++..-+++++|.. ++...-+..=..|...-.+|+..+..+.. ..+....+|+.|..++++...+.|-.
T Consensus 30 ~~s~LR~~tallDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~e--rr~~EE~~EE~Rl~rere~~q~~~E~ 105 (157)
T PF15236_consen 30 KTSFLRGMTALLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEE--RRRREEEEEEERLAREREELQRQFEE 105 (157)
T ss_pred ccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566777754 33333333334455555555444443332 22333444455666666655555533
No 21
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=32.05 E-value=2.9e+02 Score=33.54 Aligned_cols=6 Identities=50% Similarity=1.010 Sum_probs=2.9
Q ss_pred EEeccC
Q 012675 215 LIKDMF 220 (458)
Q Consensus 215 fIk~MF 220 (458)
+|+.|+
T Consensus 274 LI~~~L 279 (1021)
T PTZ00266 274 LIKNLL 279 (1021)
T ss_pred HHHHHh
Confidence 444454
No 22
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=31.67 E-value=6.6e+02 Score=26.73 Aligned_cols=64 Identities=11% Similarity=0.234 Sum_probs=44.5
Q ss_pred ccccccCCcEEEEEeeeeeeeeeeeeeecCCcceeEEeecCCCceEEEEEEeec-CCCCceEEEEEeccCCCCCeEEEEE
Q 012675 106 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPL-APPQTGVVAVQNLSNNQASFRIAAT 184 (458)
Q Consensus 106 ~kiLKSkDpLi~s~GwRRFqt~PIyS~~d~n~R~r~lKytp~~~~c~AtfyGPi-~~~~tgvlaf~~~~~~~~~fri~at 184 (458)
+.+|+..-.+++.+|-.+-.+.-.. .+ +..|...++-|+ .+++..++..+.. ....|++++
T Consensus 346 ~~~i~~g~~~~l~~~t~~~~~~i~~-i~--------------~~~~~~~l~~p~~~~~g~r~~~~~~~---~~~~~~~~~ 407 (411)
T PRK04000 346 VEPIKTGEPLMLNVGTATTVGVVTS-AR--------------KDEAEVKLKRPVCAEEGDRVAISRRV---GGRWRLIGY 407 (411)
T ss_pred CCCCCCCCEEEEEEeccEEEEEEEE-cC--------------CcEEEEEECCcEecCCCCEEEEEEec---CCcEEEEEE
Confidence 5789999999999998754433322 21 125667788997 4556777776643 357899999
Q ss_pred EEE
Q 012675 185 AVV 187 (458)
Q Consensus 185 G~v 187 (458)
|.+
T Consensus 408 ~~~ 410 (411)
T PRK04000 408 GII 410 (411)
T ss_pred EEe
Confidence 975
No 23
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=30.77 E-value=2.4e+02 Score=32.79 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=12.0
Q ss_pred CCCCCCCCCChhhHhhCCCCCC
Q 012675 342 PRKFNPLVIPKSLQAALPFESK 363 (458)
Q Consensus 342 ~r~f~~l~iPk~lq~~LPf~~k 363 (458)
.+.|.+-.-|+.=-..+||.++
T Consensus 221 ~~~~s~q~p~k~~s~~~pk~tk 242 (811)
T KOG4364|consen 221 IRSFSDQMPQKNSSEMAPKDTK 242 (811)
T ss_pred cCcccccccccCCCcCCCCCCC
Confidence 3455554555555556666654
No 24
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.26 E-value=3e+02 Score=29.04 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012675 395 QQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRK 432 (458)
Q Consensus 395 ~~l~ti~~~k~~k~~~k~~~~~~~~~~~~~k~e~~~~~ 432 (458)
|.|.....+-.+..++..+.++++.+++++.++..|..
T Consensus 334 qeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~ 371 (445)
T KOG2891|consen 334 QELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERAR 371 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33444444433333444444444444444444444443
No 25
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=24.46 E-value=3.6e+02 Score=21.67 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=38.0
Q ss_pred ccccccCCcEEEEEeeeeeeeeeeeeeecCCcceeEEeecCCCceEEEEEE---eecCCCCceEEEEEeccCCCCCeEEE
Q 012675 106 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFW---GPLAPPQTGVVAVQNLSNNQASFRIA 182 (458)
Q Consensus 106 ~kiLKSkDpLi~s~GwRRFqt~PIyS~~d~n~R~r~lKytp~~~~c~Atfy---GPi~~~~tgvlaf~~~~~~~~~fri~ 182 (458)
+.+|.+.-..++++|--.-... ..+... ++...+..+.+.+. .|+..-+.+-+++++ + +.+
T Consensus 16 ~~~i~~Gy~~~l~~~t~~~~~~----i~~i~~-----~~l~~g~~~~v~i~f~~~p~~~e~~grf~lr~------g-~tv 79 (87)
T cd03708 16 PTTISPGYQATVHIGSIRQTAR----IVSIDK-----DVLRTGDRALVRFRFLYHPEYLREGQRLIFRE------G-RTK 79 (87)
T ss_pred CCcccCCCEeEEEEcCCEEEEE----EEeccH-----hhccCCCeEEEEEEECCCCcEEccCCeEEEEC------C-CcE
Confidence 4678888777777776543321 111111 34555666655554 666423344555532 3 689
Q ss_pred EEEEEee
Q 012675 183 ATAVVLE 189 (458)
Q Consensus 183 atG~vl~ 189 (458)
|.|.|.+
T Consensus 80 a~G~I~~ 86 (87)
T cd03708 80 GVGEVTK 86 (87)
T ss_pred EEEEEEE
Confidence 9999865
No 26
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=22.09 E-value=3.3e+02 Score=22.12 Aligned_cols=63 Identities=17% Similarity=0.390 Sum_probs=38.8
Q ss_pred cCCCCCcEEEEEEcccchh-hhhccCCCCcEEEEecccccceeeEEEEEEEecC------cccccccccCCcEEEEEeee
Q 012675 50 EGFRTGTYLRMEIHDVPFE-MVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHR------WWHKKVLKSRDPIIVSIGWR 122 (458)
Q Consensus 50 eG~~~G~YVrI~i~~vP~e-~~~~fdp~~PlIvggLl~~E~k~~vv~~rikrhr------w~~~kiLKSkDpLi~s~GwR 122 (458)
-.+.||+||.|.+. ++-+ +.. | +++......-+.+.+.|++++ | -.. |+..|.+-++--+=
T Consensus 28 ~~~~pGQ~v~v~~~-~~~~~~~R------~---yS~~s~~~~~~~~~~~ik~~~~G~~S~~-L~~-l~~Gd~v~i~gP~G 95 (99)
T PF00970_consen 28 LDFKPGQFVSVRVP-INGKQVSR------P---YSPASSPDDKGYLEFAIKRYPNGRVSRY-LHQ-LKPGDEVEIRGPYG 95 (99)
T ss_dssp -SSTTT-EEEEEEE-ETTEEEEE------E---EEBCSSTTSSSEEEEEEEECTTSHHHHH-HHT-SCTTSEEEEEEEES
T ss_pred cccCcceEEEEEEc-cCCcceec------c---eeEeeecCCCCcEEEEEEeccCCHHHHH-HHh-CCCCCEEEEEEccc
Confidence 46899999999998 3221 212 2 233334455678999999983 4 333 77888877765554
Q ss_pred ee
Q 012675 123 RF 124 (458)
Q Consensus 123 RF 124 (458)
.|
T Consensus 96 ~f 97 (99)
T PF00970_consen 96 NF 97 (99)
T ss_dssp SE
T ss_pred cc
Confidence 44
No 27
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=21.82 E-value=1.1e+02 Score=25.59 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=31.1
Q ss_pred hccccCCeeeecccccceeeccccccccCCCCCCCCCCCCeeEEEEeccccccccEEEEeceeec
Q 012675 226 VAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADV 290 (458)
Q Consensus 226 V~~Fkga~L~TvsGiRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~~sDiVflrlwkrV 290 (458)
|.||+|-.+.-.+-..- .||. .-.-|-|.+.|.=.+ .+.-+.|..|||+
T Consensus 19 i~W~kG~~~~~~~~~tl----nLGs---------~~~DPRG~Y~C~~s~---~~~~~~LQVyYRM 67 (69)
T cd07691 19 ITWKKGKEILEVSNTLL----DLGS---------RINDPRGTYSCKESE---PNKEKTLQVYYRM 67 (69)
T ss_pred EEEecCcccccccccEE----eccC---------cccCCCcceEecCcc---CCCcEEEEEEEEe
Confidence 88999887775541111 1221 111278999996544 5677889999885
No 28
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.54 E-value=3.7e+02 Score=26.70 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012675 399 LIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQD 446 (458)
Q Consensus 399 ti~~~k~~k~~~k~~~~~~~~~~~~~k~e~~~~~~~k~~~k~~~r~~~ 446 (458)
++..+|+++=+...++-+++.++.+.+...++.++.++++.+....|.
T Consensus 68 liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~ 115 (201)
T COG1422 68 LIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQR 115 (201)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666555555666666665555554443
No 29
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=21.42 E-value=2e+02 Score=27.11 Aligned_cols=39 Identities=10% Similarity=0.276 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEEcccchhhhhccCCCCcEEEEecccccceeeEEEEEEEec
Q 012675 51 GFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRH 101 (458)
Q Consensus 51 G~~~G~YVrI~i~~vP~e~~~~fdp~~PlIvggLl~~E~k~~vv~~rikrh 101 (458)
.+.||+||.|.+.+.. ..+|+.+.+. +.| +.+.+.|+++
T Consensus 30 ~~~pGQ~v~l~~~~~~--------~~r~ysi~s~-~~~---~~i~~~i~~~ 68 (228)
T cd06209 30 AFLPGQYVNLQVPGTD--------ETRSYSFSSA-PGD---PRLEFLIRLL 68 (228)
T ss_pred ccCCCCEEEEEeCCCC--------cccccccccC-CCC---CeEEEEEEEc
Confidence 5899999999976432 1345555552 334 5677788875
No 30
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.05 E-value=1.4e+02 Score=32.90 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=18.6
Q ss_pred CCccccccc-cccCCcchhhHHHHHHH
Q 012675 371 KRPLLENRR-AVVMEPHERKVHVLFQQ 396 (458)
Q Consensus 371 ~~~~~~~~r-avv~~~~ekk~~~l~~~ 396 (458)
...++.|-+ -.-|+.||-|++.++.+
T Consensus 123 e~v~laQikty~eMdSHEEKi~e~v~~ 149 (512)
T KOG2635|consen 123 ENVNLAQIKTYLEMDSHEEKIHELVMR 149 (512)
T ss_pred ccccHHHhhhhhccccHHHHHHHHHHH
Confidence 344445545 45799999999998865
No 31
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=20.59 E-value=1.8e+02 Score=26.93 Aligned_cols=40 Identities=10% Similarity=0.230 Sum_probs=28.0
Q ss_pred CCCCCcEEEEEEcccchhhhhccCCCCcEEEEecccccceeeEEEEEEEecC
Q 012675 51 GFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHR 102 (458)
Q Consensus 51 G~~~G~YVrI~i~~vP~e~~~~fdp~~PlIvggLl~~E~k~~vv~~rikrhr 102 (458)
.+.||+||.|.+.+ +..+|+.+.+. +.|. +.+.+.|+.|.
T Consensus 25 ~~~pGQ~~~l~~~~---------~~~r~ySi~s~-~~~~--~~l~~~v~~~~ 64 (211)
T cd06185 25 AFEPGAHIDVHLPN---------GLVRQYSLCGD-PADR--DRYRIAVLREP 64 (211)
T ss_pred CCCCCceEEEEcCC---------CCceeeeccCC-CCCC--CEEEEEEEecc
Confidence 69999999999864 23467777764 3342 45778888764
No 32
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=20.56 E-value=6.5e+02 Score=23.64 Aligned_cols=6 Identities=50% Similarity=1.137 Sum_probs=2.5
Q ss_pred CCCCCh
Q 012675 347 PLVIPK 352 (458)
Q Consensus 347 ~l~iPk 352 (458)
|+.||.
T Consensus 4 ~v~ip~ 9 (142)
T PF06658_consen 4 PVKIPE 9 (142)
T ss_pred CccCCC
Confidence 344443
Done!