Query 012675
Match_columns 458
No_of_seqs 189 out of 479
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 14:03:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb1_A Translation elongation 99.8 5.9E-21 2E-25 198.5 7.2 167 105-289 303-480 (482)
2 1sqr_A 50S ribosomal protein L 65.0 7.6 0.00026 32.8 4.6 53 211-277 19-76 (95)
3 4a18_H RPL35A; ribosome, eukar 58.6 18 0.00062 31.4 5.9 65 209-287 30-109 (113)
4 3j21_c 50S ribosomal protein L 46.5 33 0.0011 28.5 5.4 54 210-277 18-76 (87)
5 3iz5_j 60S ribosomal protein L 41.2 26 0.00089 30.3 4.1 63 211-287 29-107 (111)
6 3izq_1 HBS1P, elongation facto 36.6 1.1E+02 0.0037 32.7 9.0 132 47-191 463-610 (611)
7 3sjy_A Translation initiation 35.5 3.3E+02 0.011 26.8 13.1 65 106-188 336-402 (403)
8 3izc_j 60S ribosomal protein R 31.2 28 0.00097 29.9 2.8 53 212-278 26-91 (107)
9 3mca_A HBS1, elongation factor 23.1 1.3E+02 0.0045 31.9 6.7 74 106-190 508-591 (592)
10 3dm3_A Replication factor A; p 20.6 1.3E+02 0.0045 24.8 5.0 27 265-291 51-82 (105)
11 1s0u_A EIF-2-gamma, translatio 20.1 6.2E+02 0.021 24.8 11.9 65 107-188 343-407 (408)
12 3p26_A Elongation factor 1 alp 20.0 6.6E+02 0.023 25.3 11.1 132 48-193 330-478 (483)
No 1
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.82 E-value=5.9e-21 Score=198.50 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=132.0
Q ss_pred cccccccCCcEEEEEeeeeeeeeeeeee---ecCCcceeEEeecCC--CceEEEEEEeecCCCCceEEEEEeccCCCCCe
Q 012675 105 HKKVLKSRDPIIVSIGWRRFQTIPVYAI---EDRSGRHRMLKYTPE--HMHCLATFWGPLAPPQTGVVAVQNLSNNQASF 179 (458)
Q Consensus 105 ~~kiLKSkDpLi~s~GwRRFqt~PIyS~---~d~n~R~r~lKytp~--~~~c~AtfyGPi~~~~tgvlaf~~~~~~~~~f 179 (458)
++.+|++..++.+++|..+-.+....-. -|.++.+..-++... ...|...+-.|++..+-+-++++...+.....
T Consensus 303 ~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~ 382 (482)
T 1wb1_A 303 FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTL 382 (482)
T ss_dssp CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSC
T ss_pred CCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCc
Confidence 3579999999999999999877765433 232333332233333 34677788899988766666676522212346
Q ss_pred EEEEEEEEeeccCceeEEEeEEEeeeeeE-----EeecceEEeccCCChhhhccccCCeeeecccc-cceeecccccccc
Q 012675 180 RIAATAVVLEFNHEVKIKKKIKLVGYPCK-----IFKKTALIKDMFTSDLEVAQCEGKEVRTVSGI-RGQVKKAAKEEIG 253 (458)
Q Consensus 180 ri~atG~vl~~d~~~~IvKKlkLtG~P~K-----I~K~tAfIk~MF~s~lEV~~Fkga~L~TvsGi-RG~IKkalgt~~~ 253 (458)
|.+|.|.|+++.+ +++++|...+.| ++++||++++||++..|++||.|.+|+|++|. +|+|+.++|+
T Consensus 383 ~tvg~G~v~~~~~----~~~l~v~k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~v~~~~g~~~G~I~~~fg~--- 455 (482)
T 1wb1_A 383 RIXGHGLIEEFKP----IKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGT--- 455 (482)
T ss_dssp CCCCBCCEEECCC----GGGSCCCCCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTT---
T ss_pred eEeeEEEEEeccc----chhceeeehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcEEEEcCCceEEEEeccCCC---
Confidence 8999999999877 455666555444 78899999999999999999999999999999 9999999999
Q ss_pred CCCCCCCCCCCCeeEEEEeccccccccEEEEeceee
Q 012675 254 NQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWAD 289 (458)
Q Consensus 254 ~~~~~~~~~~p~G~fRatFedkI~~sDiVflrlwkr 289 (458)
+|.|||+|++.|.+||+|||++|+|
T Consensus 456 -----------~G~~~~~f~~~~~~~d~v~~~~~~~ 480 (482)
T 1wb1_A 456 -----------KGLLTAEFSGNVENRDKVILNRLRR 480 (482)
T ss_dssp -----------TTBBCCCBSSCCCSSCEEEEECCCS
T ss_pred -----------CceEEEEecCCCCCCCeeeeehhhc
Confidence 9999999999999999999999987
No 2
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=65.04 E-value=7.6 Score=32.81 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=41.8
Q ss_pred ecceEEec-cCCChhhhccccCCeeeeccc----ccceeeccccccccCCCCCCCCCCCCeeEEEEeccccc
Q 012675 211 KKTALIKD-MFTSDLEVAQCEGKEVRTVSG----IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 277 (458)
Q Consensus 211 K~tAfIk~-MF~s~lEV~~Fkga~L~TvsG----iRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~ 277 (458)
-+||.||= --++.+|.++|-|-.+-=++- |-|.|..+-|. .|.+||.|...+-
T Consensus 19 ~~~aLlkIegV~~k~~a~fYlGKrvayvyka~rviwGKVtR~HGn--------------sGvVrAkF~~nLP 76 (95)
T 1sqr_A 19 NNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGT--------------KGAVRARFEKGLP 76 (95)
T ss_dssp CCEEEEEESCCCCHHHHHHHTTCEEEECCSTTCCEEEEEEEESSS--------------SSCEEEECSSCCS
T ss_pred CceEEEEEcCCCCHHHHHhhcCCeEEEEECCCCEEEEEEEeeeCC--------------CCEEEEEeCCCCC
Confidence 35555553 368899999999988765543 79999999998 9999999997763
No 3
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=58.62 E-value=18 Score=31.43 Aligned_cols=65 Identities=25% Similarity=0.350 Sum_probs=48.6
Q ss_pred EeecceEEecc-CCChhhhccccCCeee----ec--cc-----ccceeeccccccccCCCCCCCCCCCCeeEEEEecccc
Q 012675 209 IFKKTALIKDM-FTSDLEVAQCEGKEVR----TV--SG-----IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRI 276 (458)
Q Consensus 209 I~K~tAfIk~M-F~s~lEV~~Fkga~L~----Tv--sG-----iRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI 276 (458)
-+-+||.|+== =++.+|..+|.|-.+- ++ .| |-|.|..+-|. .|.+||.|...+
T Consensus 30 Q~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~g~k~RviwGKVtR~HGn--------------sGvVrAkF~~nL 95 (113)
T 4a18_H 30 QNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKKNGSNYRTIWGRIGKAHGN--------------NGVAVARFAHNL 95 (113)
T ss_dssp EEEEEEEEEETTCCSHHHHHTTTTCEEEEEEEEEEETTEEEEEEEEEEEEEETT--------------TTEEEEEESSCC
T ss_pred CCCCeEEEEEcCcCCHHHHHhhcCCeEEEEEecCCCCCCeEEEEEEEEEeeeCC--------------CCeEEEEeCCCC
Confidence 45677777743 5789999999997543 22 34 34999999998 899999999887
Q ss_pred c---cccEEEEece
Q 012675 277 L---MSDIVFMRGW 287 (458)
Q Consensus 277 ~---~sDiVflrlw 287 (458)
- +++.|.+-||
T Consensus 96 P~kA~G~~VrVmLy 109 (113)
T 4a18_H 96 PPQAIGSVLRVMLY 109 (113)
T ss_dssp CGGGGGSEEEEECC
T ss_pred ChHHcCCeEEEEEe
Confidence 4 4566776666
No 4
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=46.48 E-value=33 Score=28.49 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=38.9
Q ss_pred eecceEEecc-CCChhhhccccCCeee--eccc--ccceeeccccccccCCCCCCCCCCCCeeEEEEeccccc
Q 012675 210 FKKTALIKDM-FTSDLEVAQCEGKEVR--TVSG--IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 277 (458)
Q Consensus 210 ~K~tAfIk~M-F~s~lEV~~Fkga~L~--TvsG--iRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~ 277 (458)
+-+||.|+=- =++.+|..+|-|-.+- ++.| |.|.|..+-|. .|.+||.|...+-
T Consensus 18 ~~~taLlkieGV~~~~~a~fylGKrvayv~~~g~~iwGKVtr~HGn--------------sGvVrAkF~~nLP 76 (87)
T 3j21_c 18 HNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGT--------------KGAVRARFEKGLP 76 (87)
T ss_dssp CTTCEEEEESSCCSHHHHGGGTTCEEEECCSSSCCEEEEEEEECCS--------------SSCEEEEESSCCC
T ss_pred CCCeEEEEEcCcCCHHHHHhhcCceEEEEeCCCCEEEEEEEeeeCC--------------CCeEEEEeCCCCC
Confidence 3455555532 4788899999885443 3333 58999999998 8999999987764
No 5
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=41.23 E-value=26 Score=30.34 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=41.0
Q ss_pred ecceEEecc-CCChhhhccccCCeeee---------cccc---cceeeccccccccCCCCCCCCCCCCeeEEEEeccccc
Q 012675 211 KKTALIKDM-FTSDLEVAQCEGKEVRT---------VSGI---RGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL 277 (458)
Q Consensus 211 K~tAfIk~M-F~s~lEV~~Fkga~L~T---------vsGi---RG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~ 277 (458)
-+||.|+=- =++.+|..+|-|-.+-= .+.+ -|.|..+-|. .|.+||.|...+-
T Consensus 29 ~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~R~iwGKVtR~HGn--------------sGvVrAkF~~nLP 94 (111)
T 3iz5_j 29 ENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHGN--------------SGVVRAKFRSNLP 94 (111)
T ss_dssp CCEEEEEESSCSTTHHHHTTSCCCCEECCCCCSSSCCCCSCCEECEEEEESSS--------------SSCEEEECSSCCS
T ss_pred CCeEEEEEcCcCCHHHHHhhcCcEEEEEEeccccCCCceEEEEEEEEEeeeCC--------------CCEEEEEeCCCCC
Confidence 345555532 47889999998876521 1223 4999999998 8999999998774
Q ss_pred c---ccEEEEece
Q 012675 278 M---SDIVFMRGW 287 (458)
Q Consensus 278 ~---sDiVflrlw 287 (458)
. ++.|.+-||
T Consensus 95 ~kA~G~~VrVmLy 107 (111)
T 3iz5_j 95 PTSMGKKVRVFMY 107 (111)
T ss_dssp TTCCSSCBCC---
T ss_pred hHHcCCEEEEEEe
Confidence 3 344544343
No 6
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=36.64 E-value=1.1e+02 Score=32.68 Aligned_cols=132 Identities=11% Similarity=0.054 Sum_probs=71.6
Q ss_pred HhhcCCCCCcEEEEEEcccchhhhhccCCCCcEEEEec-ccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeee
Q 012675 47 LELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGI-GLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQ 125 (458)
Q Consensus 47 ~~~eG~~~G~YVrI~i~~vP~e~~~~fdp~~PlIvggL-l~~E~k~~vv~~rikrhrw~~~kiLKSkDpLi~s~GwRRFq 125 (458)
..++...+|+.|.|.|.++..+-+.. +.-|.--+- .+.....=-.++.+- + ++.+|....+++++||-.+-.
T Consensus 463 ~~v~~A~aGd~v~l~l~~~~~~di~r---Gdvl~~~~~~~~~~~~~f~a~v~~l---~-~~~~l~~g~~~~l~~~t~~~~ 535 (611)
T 3izq_1 463 EETDVAIKGDFVTLKLRKAYPEDIQN---GDLAASVDYSSIHSAQCFVLELTTF---D-MNRPLLPGTPFILFIGVKEQP 535 (611)
T ss_dssp CCCCCEETTCEEEEEESSCCTTSCCT---TCEEBCSTTCSCCCBSCEEEEEEEC---S-CSSCBCTTEEEEEESSSCEEE
T ss_pred cccceecCCCcceEEeeeccHhhCcc---eEEccCCCCCCCceeeEEEEEEEEE---C-CCCCCCCCCEEEEEECCeEee
Confidence 34556778999999988875443221 111111111 122222222333322 2 567999999999999998765
Q ss_pred eee--eeeeecCCccee--EEeecCCCceEEEEEEe-----ecCCCC------ceEEEEEeccCCCCCeEEEEEEEEeec
Q 012675 126 TIP--VYAIEDRSGRHR--MLKYTPEHMHCLATFWG-----PLAPPQ------TGVVAVQNLSNNQASFRIAATAVVLEF 190 (458)
Q Consensus 126 t~P--IyS~~d~n~R~r--~lKytp~~~~c~AtfyG-----Pi~~~~------tgvlaf~~~~~~~~~fri~atG~vl~~ 190 (458)
+.- |-+.-|.++-.+ --++...+..+++.+-- |+++-+ +|=++++.. -+.+|.|+|+++
T Consensus 536 ~~v~~l~~~~d~~t~~~~~~~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~------~~Tva~G~i~~v 609 (611)
T 3izq_1 536 ARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKD------GRTIAAGKISEI 609 (611)
T ss_dssp EEEEEEEESSSSCCCBCTTCSCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESS------SSEEEEEEEEEE
T ss_pred EEeeeeeeeecccccccccCccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeC------CCEEEEEEEEEe
Confidence 432 222223332111 11355566666666543 775543 455555432 168999999987
Q ss_pred c
Q 012675 191 N 191 (458)
Q Consensus 191 d 191 (458)
+
T Consensus 610 ~ 610 (611)
T 3izq_1 610 T 610 (611)
T ss_dssp C
T ss_pred c
Confidence 6
No 7
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=35.52 E-value=3.3e+02 Score=26.76 Aligned_cols=65 Identities=12% Similarity=0.253 Sum_probs=44.9
Q ss_pred ccccccCCcEEEEEeeeeeeeeeeeeeecCCcceeEEeecCCCceEEEEEEeecCC-CCc-eEEEEEeccCCCCCeEEEE
Q 012675 106 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAP-PQT-GVVAVQNLSNNQASFRIAA 183 (458)
Q Consensus 106 ~kiLKSkDpLi~s~GwRRFqt~PIyS~~d~n~R~r~lKytp~~~~c~AtfyGPi~~-~~t-gvlaf~~~~~~~~~fri~a 183 (458)
..+|+...++.|++|-.+-...-. +... ..+...+--|++. .+. .|+..+..+ ..+||++
T Consensus 336 ~~~l~~~~~~~~~~gt~~~~~~v~-~~~~--------------~~~~~~l~~p~~~~~g~~r~~i~r~~~---~~~r~~g 397 (403)
T 3sjy_A 336 VDPIRAKETLMLSVGSSTTLGIVT-SVKK--------------DEIEVELRRPVAVWSNNIRTVISRQIA---GRWRMIG 397 (403)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEE-EECS--------------SEEEEEEEEEEECCSSSCEEEEEEEET---TEEEEEE
T ss_pred CCCCCCCCEEEEEECccEEEEEEE-EecC--------------ceEEEEeCCcEeeccCCEEEEEEEEeC---CcEEEEE
Confidence 679999999999999876554433 2221 1344455577643 456 788877653 6799999
Q ss_pred EEEEe
Q 012675 184 TAVVL 188 (458)
Q Consensus 184 tG~vl 188 (458)
.|.|.
T Consensus 398 ~g~i~ 402 (403)
T 3sjy_A 398 WGLVE 402 (403)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99874
No 8
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=31.16 E-value=28 Score=29.93 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=37.2
Q ss_pred cceEEecc-CCChhhhccccCCee----eecc---c-----ccceeeccccccccCCCCCCCCCCCCeeEEEEecccccc
Q 012675 212 KTALIKDM-FTSDLEVAQCEGKEV----RTVS---G-----IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILM 278 (458)
Q Consensus 212 ~tAfIk~M-F~s~lEV~~Fkga~L----~Tvs---G-----iRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~~ 278 (458)
+||.|+== =++.+|..+|-|-.+ +++. | |-|.|..+-|. .|.+||.|...+-.
T Consensus 26 ~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~RviwGKVtR~HGn--------------sGvVrAkF~~nLP~ 91 (107)
T 3izc_j 26 NVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGN--------------SGVVRATFRNNLPA 91 (107)
T ss_dssp CEEEEEESSCSTTHHHHTTCCCCCCCCCCCCSSSCCCCSCCCCCCEEECSSS--------------SSCEEECCCSCCST
T ss_pred CeEEEEEcCcCCHHHHHhhcCCEEEEEEecCcccCCceEEEEEEEEEeeeCC--------------CCeEEEEeCCCCCh
Confidence 44444422 367899999988643 2222 3 35999999998 89999999987743
No 9
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=23.09 E-value=1.3e+02 Score=31.85 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=44.8
Q ss_pred ccccccCCcEEEEEeeeeeeeeeeeeeecCC-cceeEEeecCCCceEEEEEE---eecCC------CCceEEEEEeccCC
Q 012675 106 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRS-GRHRMLKYTPEHMHCLATFW---GPLAP------PQTGVVAVQNLSNN 175 (458)
Q Consensus 106 ~kiLKSkDpLi~s~GwRRFqt~PIyS~~d~n-~R~r~lKytp~~~~c~Atfy---GPi~~------~~tgvlaf~~~~~~ 175 (458)
..||.....++|+||=.+-.+.- .....+ ..- ++...+..|.+.|- .|+++ +..+-++++..
T Consensus 508 ~~pi~~g~~~~l~~~t~~~~~~i--~l~~~~~~~~---~~l~~gd~~~v~l~fl~~p~~~e~~~~~~~~~rfilr~~--- 579 (592)
T 3mca_A 508 HGPILSGSTLVLHLGRTVTSVSL--KIVTVNNKRS---RHIASRKRALVRISFLDGLFPLCLAEECPALGRFILRRS--- 579 (592)
T ss_dssp SSCEETTEEEEEECSSCEEEEEE--EEEESSSSCC---SEECSSCEEEEEEEESSSCEEECCTTTCHHHHEEEEESS---
T ss_pred CccCCCCCEEEEEEcCcEEEEEE--EEEeccccch---hccCCCCEEEEEEEECCCcEEEEeccCCCCCCeEEEEEC---
Confidence 46888889999999976554433 222111 111 24456666666665 67766 55555666532
Q ss_pred CCCeEEEEEEEEeec
Q 012675 176 QASFRIAATAVVLEF 190 (458)
Q Consensus 176 ~~~fri~atG~vl~~ 190 (458)
-+.+|.|+|.++
T Consensus 580 ---~~Tv~~G~i~~v 591 (592)
T 3mca_A 580 ---GDTVAAGIVKEL 591 (592)
T ss_dssp ---SSEEEEEEEEEE
T ss_pred ---CcEEEEEEEEEc
Confidence 257899988764
No 10
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=20.64 E-value=1.3e+02 Score=24.80 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.4
Q ss_pred CeeEEEE-ecc----ccccccEEEEeceeecc
Q 012675 265 EGIARCT-FED----RILMSDIVFMRGWADVE 291 (458)
Q Consensus 265 ~G~fRat-Fed----kI~~sDiVflrlwkrV~ 291 (458)
-|.+++| |++ .+...|+|.++.|.++.
T Consensus 51 TG~IrvtlW~~~a~~~l~~Gdvv~i~g~vk~~ 82 (105)
T 3dm3_A 51 TGSIRVTLWDNLTDIDVGRGDYVRVRGYIREG 82 (105)
T ss_dssp TEEEEEEEEGGGGGSCCCTTCEEEEEEEEEEC
T ss_pred CCcEEEEEECcccccccCCCCEEEEEEEEEEc
Confidence 5899998 777 68899999999999886
No 11
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=20.11 E-value=6.2e+02 Score=24.79 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=42.9
Q ss_pred cccccCCcEEEEEeeeeeeeeeeeeeecCCcceeEEeecCCCceEEEEEEeecCCCCceEEEEEeccCCCCCeEEEEEEE
Q 012675 107 KVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAV 186 (458)
Q Consensus 107 kiLKSkDpLi~s~GwRRFqt~PIyS~~d~n~R~r~lKytp~~~~c~AtfyGPi~~~~tgvlaf~~~~~~~~~fri~atG~ 186 (458)
.+|+...+++|++|-.+-...-. .... ..|...+--|++.-.---++++... ....|++|+|.
T Consensus 343 ~~l~~g~~~~~~~~t~~~~~~v~-~~~~--------------~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~r~ig~G~ 405 (408)
T 1s0u_A 343 EPLRTGEVLMLNIGTATTAGVIT-SARG--------------DIADIKLKLPICAEIGDRVAISRRV--GSRWRLIGYGT 405 (408)
T ss_dssp CCCCTTCEEEEEETTEEEEEEEE-EEET--------------TEEEEEEEEEEECCTTCEEEEEEEC--SSSEEEEEEEE
T ss_pred cCCCCCCEEEEEEcCCEEEEEEE-EecC--------------CEEEEEECCcEEecCCCEEEEEEec--CCCeEEEEEEE
Confidence 78999999999999765433222 2211 2666777789866554444444432 24689999999
Q ss_pred Ee
Q 012675 187 VL 188 (458)
Q Consensus 187 vl 188 (458)
|.
T Consensus 406 i~ 407 (408)
T 1s0u_A 406 IE 407 (408)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 12
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=20.02 E-value=6.6e+02 Score=25.34 Aligned_cols=132 Identities=11% Similarity=0.099 Sum_probs=67.9
Q ss_pred hhcCCCCCcEEEEEEcccchhhhhccCCCCcEEEE-ec-ccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeee
Q 012675 48 ELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVG-GI-GLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQ 125 (458)
Q Consensus 48 ~~eG~~~G~YVrI~i~~vP~e~~~~fdp~~PlIvg-gL-l~~E~k~~vv~~rikrhrw~~~kiLKSkDpLi~s~GwRRFq 125 (458)
.++...+|+.|.|.|.++..+-+.. +. ++.. +- .+.....=-.++.+- + ++.+|....++++.||=.+-.
T Consensus 330 ~~~~a~aG~~v~~~l~~~~~~di~r---G~-vl~~~~~~~~~~~~~f~a~v~~l---~-~~~~l~~g~~~~l~~~t~~~~ 401 (483)
T 3p26_A 330 ETDVAIKGDFVTLKLRKAYPEDIQN---GD-LAASVDYSSIHSAQCFVLELTTF---D-MNRPLLPGTPFILFIGVKEQP 401 (483)
T ss_dssp EESCEETTCEEEEEEESCCGGGCCT---TC-EEECTTCCCCEECSEEEEEEEEC---S-CSSCBCTTCEEEEEETTEEEE
T ss_pred cccEECCCCEEEEEEEecccccCCc---eE-EEEcCCCCCCceeeEEEEEEEEE---C-CCCCCCCCCEEEEEeCceEEE
Confidence 3445667888888777765443322 11 1110 11 111111112222221 2 577999999999999987654
Q ss_pred eee--eeeeecCCccee--EEeecCCCceEEEEEEe-----ecC------CCCceEEEEEeccCCCCCeEEEEEEEEeec
Q 012675 126 TIP--VYAIEDRSGRHR--MLKYTPEHMHCLATFWG-----PLA------PPQTGVVAVQNLSNNQASFRIAATAVVLEF 190 (458)
Q Consensus 126 t~P--IyS~~d~n~R~r--~lKytp~~~~c~AtfyG-----Pi~------~~~tgvlaf~~~~~~~~~fri~atG~vl~~ 190 (458)
+.- |-+.-|.++-.+ --++...+..+++.+-- |++ ++.+|=.++... -+-+|.|+|.+.
T Consensus 402 ~~v~~i~~~~d~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~------~~tv~~G~i~~~ 475 (483)
T 3p26_A 402 ARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKD------GRTIAAGKISEI 475 (483)
T ss_dssp EEEEEEEEEEEETTEECCSCCSCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEET------TEEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCcccccCccCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeC------CCEEEEEEEEEe
Confidence 432 222223232111 11255566666666543 653 335555555432 257899999887
Q ss_pred cCc
Q 012675 191 NHE 193 (458)
Q Consensus 191 d~~ 193 (458)
+..
T Consensus 476 ~~~ 478 (483)
T 3p26_A 476 TQH 478 (483)
T ss_dssp CC-
T ss_pred ccc
Confidence 654
Done!