Query 012677
Match_columns 458
No_of_seqs 390 out of 2970
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 5.4E-28 1.2E-32 268.3 29.8 278 168-451 13-313 (2102)
2 KOG4224 Armadillo repeat prote 100.0 1.6E-28 3.4E-33 225.2 17.4 279 168-454 126-409 (550)
3 PLN03200 cellulose synthase-in 100.0 3E-27 6.5E-32 262.4 28.3 282 167-456 445-770 (2102)
4 KOG0166 Karyopherin (importin) 100.0 8.3E-27 1.8E-31 228.1 23.5 280 168-453 109-396 (514)
5 KOG4224 Armadillo repeat prote 99.9 1.4E-26 3.1E-31 212.4 19.6 277 166-451 165-447 (550)
6 KOG0166 Karyopherin (importin) 99.9 1E-24 2.3E-29 213.4 22.1 283 168-455 152-441 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 3.8E-24 8.2E-29 195.0 15.3 276 168-452 114-400 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 1.3E-22 2.8E-27 185.0 16.8 282 166-454 155-447 (526)
9 PF05804 KAP: Kinesin-associat 99.9 7.5E-20 1.6E-24 189.0 23.1 217 232-454 267-483 (708)
10 PF05804 KAP: Kinesin-associat 99.8 2.4E-18 5.1E-23 178.0 26.4 250 185-450 267-520 (708)
11 KOG4199 Uncharacterized conser 99.8 1.8E-16 4E-21 144.9 26.5 212 243-456 177-409 (461)
12 PF04564 U-box: U-box domain; 99.8 3E-19 6.5E-24 132.3 5.3 72 76-147 1-72 (73)
13 KOG4199 Uncharacterized conser 99.8 2.5E-16 5.4E-21 144.0 22.4 276 169-451 146-445 (461)
14 KOG2122 Beta-catenin-binding p 99.7 1E-16 2.3E-21 168.5 17.4 267 183-453 313-604 (2195)
15 KOG1048 Neural adherens juncti 99.7 5.7E-16 1.2E-20 156.9 17.3 279 169-454 234-599 (717)
16 PF04826 Arm_2: Armadillo-like 99.6 2.4E-14 5.2E-19 132.0 20.3 194 209-410 11-208 (254)
17 smart00504 Ubox Modified RING 99.6 2E-16 4.4E-21 114.5 5.2 63 79-142 1-63 (63)
18 KOG1048 Neural adherens juncti 99.6 1.4E-13 3.1E-18 139.7 18.8 281 168-456 275-690 (717)
19 PF04826 Arm_2: Armadillo-like 99.6 2.6E-13 5.6E-18 125.2 18.5 187 168-365 12-205 (254)
20 KOG2122 Beta-catenin-binding p 99.4 1.3E-12 2.7E-17 138.4 14.3 226 181-412 365-606 (2195)
21 PF15227 zf-C3HC4_4: zinc fing 99.4 8.1E-14 1.8E-18 90.6 2.9 39 82-120 1-42 (42)
22 PF10508 Proteasom_PSMB: Prote 99.4 1.1E-10 2.4E-15 119.6 25.8 272 173-454 43-323 (503)
23 KOG1222 Kinesin associated pro 99.4 1.9E-11 4.2E-16 117.1 15.6 219 229-453 278-496 (791)
24 PF10508 Proteasom_PSMB: Prote 99.4 2.8E-10 6.2E-15 116.6 24.9 272 169-449 78-365 (503)
25 PLN03208 E3 ubiquitin-protein 99.3 7.1E-13 1.5E-17 114.0 4.8 61 74-134 13-88 (193)
26 cd00020 ARM Armadillo/beta-cat 99.3 5E-11 1.1E-15 97.9 12.3 115 292-407 2-120 (120)
27 TIGR00599 rad18 DNA repair pro 99.3 4.3E-12 9.4E-17 122.6 6.8 71 73-144 20-90 (397)
28 cd00020 ARM Armadillo/beta-cat 99.2 1.5E-10 3.2E-15 95.0 13.2 116 333-450 2-120 (120)
29 KOG4500 Rho/Rac GTPase guanine 99.2 2.8E-09 6E-14 101.3 20.9 280 169-451 88-476 (604)
30 PF13923 zf-C3HC4_2: Zinc fing 99.2 8.1E-12 1.7E-16 80.4 2.6 38 82-120 1-39 (39)
31 KOG0823 Predicted E3 ubiquitin 99.2 8.8E-12 1.9E-16 109.0 2.5 59 77-135 45-105 (230)
32 KOG0287 Postreplication repair 99.1 1.9E-11 4E-16 111.6 2.6 68 76-144 20-87 (442)
33 PF03224 V-ATPase_H_N: V-ATPas 99.1 1.9E-09 4.2E-14 104.1 16.7 227 212-440 57-304 (312)
34 KOG0946 ER-Golgi vesicle-tethe 99.1 2.4E-08 5.1E-13 101.4 23.9 277 168-451 22-347 (970)
35 KOG1222 Kinesin associated pro 99.1 1.1E-08 2.3E-13 98.6 19.5 266 169-450 261-534 (791)
36 KOG0317 Predicted E3 ubiquitin 99.1 9.7E-11 2.1E-15 105.6 4.0 53 76-129 236-288 (293)
37 PF14835 zf-RING_6: zf-RING of 99.1 4.8E-11 1E-15 82.4 1.6 59 78-139 6-65 (65)
38 PF00097 zf-C3HC4: Zinc finger 99.0 1.3E-10 2.9E-15 75.8 2.9 39 82-120 1-41 (41)
39 PF13920 zf-C3HC4_3: Zinc fing 99.0 1.6E-10 3.4E-15 78.9 2.6 46 79-125 2-48 (50)
40 PF13639 zf-RING_2: Ring finge 99.0 9.5E-11 2.1E-15 77.7 1.5 40 81-121 2-44 (44)
41 PRK09687 putative lyase; Provi 99.0 1.9E-08 4.2E-13 95.0 17.4 220 169-447 55-279 (280)
42 PF13445 zf-RING_UBOX: RING-ty 99.0 1.5E-10 3.2E-15 75.1 1.7 36 82-118 1-43 (43)
43 KOG4500 Rho/Rac GTPase guanine 99.0 3.8E-08 8.3E-13 93.8 18.3 262 188-451 245-520 (604)
44 PRK09687 putative lyase; Provi 99.0 2.2E-08 4.8E-13 94.6 16.5 222 168-449 23-249 (280)
45 COG5432 RAD18 RING-finger-cont 99.0 2.5E-10 5.5E-15 102.1 3.0 68 76-144 22-89 (391)
46 PHA02929 N1R/p28-like protein; 99.0 4.1E-10 8.9E-15 101.6 4.1 48 77-125 172-227 (238)
47 KOG0320 Predicted E3 ubiquitin 99.0 4.8E-10 1E-14 93.7 4.1 54 76-130 128-183 (187)
48 cd00256 VATPase_H VATPase_H, r 98.9 3.5E-07 7.5E-12 90.3 22.2 274 170-449 103-424 (429)
49 cd00162 RING RING-finger (Real 98.9 2.1E-09 4.5E-14 71.6 3.4 44 81-124 1-45 (45)
50 PF03224 V-ATPase_H_N: V-ATPas 98.8 5.2E-08 1.1E-12 94.1 13.5 213 170-387 60-293 (312)
51 KOG2160 Armadillo/beta-catenin 98.8 3.6E-07 7.8E-12 86.1 18.2 179 268-447 95-279 (342)
52 smart00184 RING Ring finger. E 98.8 5.3E-09 1.1E-13 67.2 3.1 39 82-120 1-39 (39)
53 PRK13800 putative oxidoreducta 98.8 7.4E-07 1.6E-11 98.0 21.5 90 168-283 621-711 (897)
54 PHA02926 zinc finger-like prot 98.8 5.5E-09 1.2E-13 90.8 3.6 50 76-125 167-230 (242)
55 KOG2160 Armadillo/beta-catenin 98.8 1.8E-06 3.8E-11 81.5 20.5 182 226-409 95-284 (342)
56 TIGR00570 cdk7 CDK-activating 98.7 3.1E-08 6.8E-13 92.0 5.9 62 78-139 2-72 (309)
57 KOG2164 Predicted E3 ubiquitin 98.7 2.9E-08 6.3E-13 96.7 5.5 69 79-147 186-262 (513)
58 PF14634 zf-RING_5: zinc-RING 98.6 1.8E-08 3.9E-13 66.5 2.8 41 81-122 1-44 (44)
59 KOG0168 Putative ubiquitin fus 98.6 1.4E-06 3.1E-11 89.5 17.6 210 212-431 169-390 (1051)
60 KOG2177 Predicted E3 ubiquitin 98.6 2E-08 4.4E-13 98.0 4.3 68 75-145 9-76 (386)
61 KOG0978 E3 ubiquitin ligase in 98.6 2.7E-08 5.8E-13 101.8 5.2 56 76-131 640-695 (698)
62 PF12678 zf-rbx1: RING-H2 zinc 98.6 2.6E-08 5.6E-13 73.5 3.5 40 81-121 21-73 (73)
63 COG5574 PEX10 RING-finger-cont 98.6 1.5E-08 3.3E-13 90.4 2.6 51 77-127 213-264 (271)
64 KOG0168 Putative ubiquitin fus 98.6 4.7E-06 1E-10 85.8 20.4 254 169-432 168-437 (1051)
65 PRK13800 putative oxidoreducta 98.6 6.3E-06 1.4E-10 90.8 23.1 221 168-446 652-895 (897)
66 KOG0311 Predicted E3 ubiquitin 98.6 8.8E-09 1.9E-13 95.4 0.3 69 75-143 39-109 (381)
67 cd00256 VATPase_H VATPase_H, r 98.6 8.8E-06 1.9E-10 80.4 20.8 228 210-440 53-298 (429)
68 PF11789 zf-Nse: Zinc-finger o 98.5 3.6E-08 7.9E-13 68.4 1.5 45 77-121 9-55 (57)
69 KOG2171 Karyopherin (importin) 98.5 2.5E-05 5.4E-10 83.4 22.7 269 181-454 173-508 (1075)
70 KOG4628 Predicted E3 ubiquitin 98.5 2.3E-07 5.1E-12 87.7 6.7 48 80-127 230-280 (348)
71 KOG2660 Locus-specific chromos 98.5 9.5E-08 2E-12 88.2 3.2 67 75-142 11-82 (331)
72 KOG4646 Uncharacterized conser 98.5 1.9E-06 4E-11 69.6 9.9 154 293-448 12-168 (173)
73 KOG2042 Ubiquitin fusion degra 98.4 1.2E-07 2.7E-12 99.7 4.1 121 23-146 803-937 (943)
74 KOG2973 Uncharacterized conser 98.4 4.5E-05 9.7E-10 70.3 19.8 269 170-450 5-315 (353)
75 PF01602 Adaptin_N: Adaptin N 98.4 1.7E-05 3.7E-10 82.6 18.6 135 170-324 44-179 (526)
76 COG5540 RING-finger-containing 98.4 1.5E-07 3.3E-12 85.2 2.5 47 80-126 324-373 (374)
77 PF01602 Adaptin_N: Adaptin N 98.4 9.8E-06 2.1E-10 84.4 16.5 280 130-453 53-336 (526)
78 KOG1293 Proteins containing ar 98.4 1.7E-05 3.6E-10 79.9 16.7 141 308-449 388-532 (678)
79 COG5243 HRD1 HRD ubiquitin lig 98.4 2.5E-07 5.4E-12 86.0 3.6 49 77-126 285-346 (491)
80 KOG2759 Vacuolar H+-ATPase V1 98.4 4.8E-05 1E-09 73.1 18.8 277 168-449 65-437 (442)
81 KOG4646 Uncharacterized conser 98.3 3.9E-06 8.6E-11 67.8 8.5 126 257-382 17-146 (173)
82 KOG0946 ER-Golgi vesicle-tethe 98.3 4.2E-05 9.2E-10 78.4 16.8 214 210-431 22-264 (970)
83 PF12861 zf-Apc11: Anaphase-pr 98.2 8.5E-07 1.9E-11 65.8 3.4 35 92-126 46-83 (85)
84 COG5113 UFD2 Ubiquitin fusion 98.2 1.5E-06 3.2E-11 86.4 5.9 124 24-148 788-923 (929)
85 COG5222 Uncharacterized conser 98.2 1.6E-06 3.4E-11 78.4 4.7 67 80-146 275-343 (427)
86 KOG0297 TNF receptor-associate 98.2 1.3E-06 2.7E-11 86.4 4.5 71 71-142 13-85 (391)
87 KOG3678 SARM protein (with ste 98.2 9.2E-05 2E-09 71.8 16.6 243 201-450 172-452 (832)
88 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00017 3.6E-09 70.9 18.7 257 191-457 7-276 (371)
89 KOG2171 Karyopherin (importin) 98.2 9.7E-05 2.1E-09 79.1 18.0 238 178-428 359-613 (1075)
90 PF05536 Neurochondrin: Neuroc 98.2 9.2E-05 2E-09 76.5 17.4 152 257-410 6-171 (543)
91 PF00514 Arm: Armadillo/beta-c 98.1 4E-06 8.7E-11 54.4 4.7 41 366-407 1-41 (41)
92 PF05536 Neurochondrin: Neuroc 98.1 0.00022 4.7E-09 73.8 19.7 238 211-455 6-266 (543)
93 KOG4159 Predicted E3 ubiquitin 98.1 2E-06 4.2E-11 83.8 4.1 69 75-144 80-153 (398)
94 KOG1002 Nucleotide excision re 98.1 2.9E-06 6.3E-11 82.5 5.2 83 43-127 502-588 (791)
95 KOG1293 Proteins containing ar 98.1 3.9E-05 8.4E-10 77.4 13.1 165 247-413 369-539 (678)
96 PF00514 Arm: Armadillo/beta-c 98.1 3.3E-06 7.1E-11 54.8 3.1 40 287-326 2-41 (41)
97 KOG0802 E3 ubiquitin ligase [P 98.0 1.5E-06 3.3E-11 90.1 1.7 48 77-125 289-341 (543)
98 KOG2734 Uncharacterized conser 98.0 0.0017 3.8E-08 62.8 21.9 257 187-452 104-402 (536)
99 PTZ00429 beta-adaptin; Provisi 98.0 0.0029 6.3E-08 67.5 24.8 254 170-451 70-327 (746)
100 COG5152 Uncharacterized conser 98.0 2.5E-06 5.4E-11 72.5 1.3 47 79-126 196-242 (259)
101 KOG0824 Predicted E3 ubiquitin 97.9 4E-06 8.7E-11 76.4 2.1 47 81-127 9-55 (324)
102 TIGR02270 conserved hypothetic 97.9 0.0014 3E-08 65.3 19.5 147 259-451 150-297 (410)
103 KOG3678 SARM protein (with ste 97.9 0.0003 6.5E-09 68.4 14.0 233 168-409 180-454 (832)
104 KOG2879 Predicted E3 ubiquitin 97.9 1E-05 2.2E-10 72.8 3.7 50 76-125 236-287 (298)
105 KOG2973 Uncharacterized conser 97.8 0.00037 8.1E-09 64.4 13.1 234 213-456 6-279 (353)
106 KOG2759 Vacuolar H+-ATPase V1 97.8 0.0015 3.3E-08 63.0 17.6 223 179-408 169-439 (442)
107 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0044 9.5E-08 61.0 21.4 268 176-452 34-366 (371)
108 KOG1813 Predicted E3 ubiquitin 97.8 8.1E-06 1.8E-10 74.3 1.9 48 78-126 240-287 (313)
109 KOG4642 Chaperone-dependent E3 97.8 2.9E-05 6.2E-10 69.1 5.3 74 75-148 207-280 (284)
110 KOG1789 Endocytosis protein RM 97.8 0.0046 9.9E-08 65.9 21.6 243 179-431 1784-2140(2235)
111 KOG4172 Predicted E3 ubiquitin 97.8 5.1E-06 1.1E-10 55.0 0.3 46 80-125 8-54 (62)
112 PTZ00429 beta-adaptin; Provisi 97.7 0.0047 1E-07 66.0 20.9 247 170-449 34-284 (746)
113 PF12348 CLASP_N: CLASP N term 97.7 0.0026 5.7E-08 58.4 16.0 185 266-455 17-211 (228)
114 PF13646 HEAT_2: HEAT repeats; 97.6 0.00023 5E-09 54.6 7.5 84 258-361 1-88 (88)
115 KOG0828 Predicted E3 ubiquitin 97.6 3.8E-05 8.3E-10 74.4 3.1 51 76-126 568-635 (636)
116 KOG4413 26S proteasome regulat 97.6 0.024 5.2E-07 53.2 20.9 235 168-409 128-379 (524)
117 KOG2023 Nuclear transport rece 97.6 0.0019 4.2E-08 65.5 14.5 270 168-452 128-465 (885)
118 KOG4413 26S proteasome regulat 97.6 0.0047 1E-07 57.8 15.7 240 211-451 79-334 (524)
119 PF10165 Ric8: Guanine nucleot 97.5 0.0088 1.9E-07 60.6 19.2 263 188-454 2-341 (446)
120 PF13646 HEAT_2: HEAT repeats; 97.5 0.00032 6.9E-09 53.8 6.8 85 299-403 1-88 (88)
121 smart00185 ARM Armadillo/beta- 97.5 0.00017 3.7E-09 46.4 4.1 40 287-326 2-41 (41)
122 KOG0804 Cytoplasmic Zn-finger 97.5 4.7E-05 1E-09 73.2 1.8 47 76-125 172-222 (493)
123 KOG1734 Predicted RING-contain 97.4 2.8E-05 6.1E-10 69.6 -0.5 55 78-132 223-288 (328)
124 PF10165 Ric8: Guanine nucleot 97.4 0.011 2.4E-07 60.0 17.5 233 179-413 44-343 (446)
125 smart00185 ARM Armadillo/beta- 97.4 0.00042 9.1E-09 44.6 4.9 40 367-407 2-41 (41)
126 KOG1789 Endocytosis protein RM 97.4 0.0051 1.1E-07 65.5 14.9 138 271-408 1740-1884(2235)
127 smart00744 RINGv The RING-vari 97.3 0.00019 4.2E-09 48.2 2.9 41 81-121 1-49 (49)
128 KOG4692 Predicted E3 ubiquitin 97.3 0.00023 4.9E-09 66.3 4.2 49 77-126 420-468 (489)
129 KOG0826 Predicted E3 ubiquitin 97.3 0.00016 3.5E-09 66.9 3.3 55 70-125 291-346 (357)
130 KOG1242 Protein containing ada 97.3 0.024 5.3E-07 57.5 18.8 267 169-453 97-404 (569)
131 KOG0212 Uncharacterized conser 97.3 0.021 4.6E-07 57.2 17.6 263 180-455 180-449 (675)
132 PF11793 FANCL_C: FANCL C-term 97.3 5.3E-05 1.2E-09 55.3 -0.2 47 79-125 2-66 (70)
133 PF09759 Atx10homo_assoc: Spin 97.3 0.0016 3.4E-08 51.0 7.8 66 352-418 2-69 (102)
134 COG5369 Uncharacterized conser 97.3 0.0049 1.1E-07 61.2 12.8 258 185-449 407-740 (743)
135 TIGR02270 conserved hypothetic 97.2 0.024 5.1E-07 56.6 17.8 116 212-363 88-205 (410)
136 KOG2023 Nuclear transport rece 97.2 0.0061 1.3E-07 62.0 13.4 231 210-452 128-424 (885)
137 PF11841 DUF3361: Domain of un 97.2 0.018 3.8E-07 48.9 14.2 121 291-412 5-136 (160)
138 COG1413 FOG: HEAT repeat [Ener 97.2 0.02 4.4E-07 55.9 16.9 188 210-446 43-238 (335)
139 PF12348 CLASP_N: CLASP N term 97.2 0.0037 8E-08 57.4 10.9 177 179-365 19-206 (228)
140 COG5369 Uncharacterized conser 97.2 0.0041 8.8E-08 61.8 11.4 195 234-430 409-617 (743)
141 COG5194 APC11 Component of SCF 97.2 0.0003 6.4E-09 50.8 2.5 44 81-125 33-81 (88)
142 KOG1645 RING-finger-containing 97.1 0.00022 4.9E-09 67.8 1.9 61 79-139 4-70 (463)
143 KOG2734 Uncharacterized conser 97.1 0.18 3.9E-06 49.3 21.4 240 168-409 125-402 (536)
144 KOG1059 Vesicle coat complex A 97.1 0.14 3E-06 53.1 21.6 215 169-409 182-403 (877)
145 KOG1785 Tyrosine kinase negati 97.1 0.0002 4.4E-09 67.7 1.3 47 81-127 371-418 (563)
146 KOG0212 Uncharacterized conser 97.1 0.024 5.2E-07 56.9 15.5 236 210-454 167-410 (675)
147 KOG2259 Uncharacterized conser 97.1 0.0034 7.3E-08 63.8 9.8 218 168-409 198-441 (823)
148 KOG3039 Uncharacterized conser 97.0 0.00043 9.2E-09 61.4 2.9 53 78-131 220-276 (303)
149 PF13513 HEAT_EZ: HEAT-like re 97.0 0.0009 2E-08 46.3 3.9 55 270-324 1-55 (55)
150 KOG1039 Predicted E3 ubiquitin 97.0 0.0004 8.6E-09 66.5 2.5 50 77-126 159-222 (344)
151 KOG1241 Karyopherin (importin) 97.0 0.083 1.8E-06 55.0 18.9 268 166-454 170-481 (859)
152 COG1413 FOG: HEAT repeat [Ener 97.0 0.074 1.6E-06 51.9 18.5 182 169-406 44-241 (335)
153 PF14570 zf-RING_4: RING/Ubox 97.0 0.00074 1.6E-08 44.5 2.8 43 82-124 1-47 (48)
154 KOG1493 Anaphase-promoting com 97.0 0.00038 8.2E-09 49.8 1.5 45 81-125 33-81 (84)
155 KOG3800 Predicted E3 ubiquitin 96.9 0.00068 1.5E-08 61.9 3.3 49 81-129 2-55 (300)
156 KOG4367 Predicted Zn-finger pr 96.9 0.00029 6.3E-09 67.3 1.0 35 77-111 2-36 (699)
157 KOG1571 Predicted E3 ubiquitin 96.9 0.00086 1.9E-08 63.3 3.8 48 74-125 300-347 (355)
158 KOG1242 Protein containing ada 96.9 0.087 1.9E-06 53.7 18.0 183 257-449 255-443 (569)
159 KOG4265 Predicted E3 ubiquitin 96.9 0.00076 1.6E-08 63.7 3.3 48 78-126 289-337 (349)
160 KOG3036 Protein involved in ce 96.8 0.28 6.1E-06 44.4 18.8 233 170-407 28-291 (293)
161 PF14447 Prok-RING_4: Prokaryo 96.8 0.00075 1.6E-08 45.5 1.6 48 78-128 6-53 (55)
162 KOG0827 Predicted E3 ubiquitin 96.7 0.00094 2E-08 63.2 2.6 47 80-126 5-57 (465)
163 PF04063 DUF383: Domain of unk 96.7 0.013 2.9E-07 51.8 9.6 124 227-350 8-159 (192)
164 KOG4275 Predicted E3 ubiquitin 96.6 0.00068 1.5E-08 61.7 0.9 42 79-125 300-342 (350)
165 KOG1241 Karyopherin (importin) 96.6 0.13 2.8E-06 53.6 16.9 269 169-453 130-438 (859)
166 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0049 1.1E-07 42.6 4.8 55 392-448 1-55 (55)
167 KOG1517 Guanine nucleotide bin 96.5 0.094 2E-06 56.4 15.9 215 233-449 489-731 (1387)
168 COG5240 SEC21 Vesicle coat com 96.5 0.19 4.2E-06 50.8 17.1 259 169-449 264-554 (898)
169 KOG2817 Predicted E3 ubiquitin 96.5 0.0016 3.4E-08 62.4 2.5 49 76-124 331-384 (394)
170 KOG0825 PHD Zn-finger protein 96.5 0.00055 1.2E-08 70.1 -0.5 46 80-126 124-172 (1134)
171 PF04078 Rcd1: Cell differenti 96.5 0.055 1.2E-06 49.7 12.2 200 174-375 3-228 (262)
172 PF04641 Rtf2: Rtf2 RING-finge 96.5 0.0022 4.9E-08 60.0 3.5 53 76-130 110-166 (260)
173 COG5219 Uncharacterized conser 96.4 0.0015 3.2E-08 68.5 1.5 47 80-126 1470-1524(1525)
174 COG5181 HSH155 U2 snRNP splice 96.3 0.098 2.1E-06 53.2 13.8 263 169-454 605-874 (975)
175 KOG1248 Uncharacterized conser 96.2 0.3 6.6E-06 53.4 17.9 219 226-453 666-901 (1176)
176 KOG0213 Splicing factor 3b, su 96.2 0.085 1.8E-06 54.7 12.7 249 179-451 811-1066(1172)
177 KOG1077 Vesicle coat complex A 96.2 0.56 1.2E-05 48.7 18.3 230 170-418 151-407 (938)
178 KOG4185 Predicted E3 ubiquitin 96.1 0.0047 1E-07 59.2 3.7 63 80-142 4-77 (296)
179 KOG2999 Regulator of Rac1, req 96.1 0.28 6E-06 49.4 15.6 152 259-411 86-246 (713)
180 KOG3039 Uncharacterized conser 96.1 0.004 8.7E-08 55.4 2.7 38 74-111 38-75 (303)
181 COG5175 MOT2 Transcriptional r 96.1 0.0041 8.9E-08 57.8 2.9 48 81-128 16-67 (480)
182 PF11841 DUF3361: Domain of un 96.1 0.11 2.4E-06 44.1 11.2 124 249-373 5-141 (160)
183 COG5096 Vesicle coat complex, 96.1 0.17 3.6E-06 53.8 14.7 162 227-408 32-196 (757)
184 KOG1077 Vesicle coat complex A 96.1 0.68 1.5E-05 48.1 18.4 260 171-454 114-402 (938)
185 KOG0289 mRNA splicing factor [ 96.1 0.018 3.9E-07 55.7 7.0 50 80-130 1-51 (506)
186 KOG1824 TATA-binding protein-i 96.0 0.18 3.8E-06 53.9 14.4 178 170-358 570-754 (1233)
187 PF05290 Baculo_IE-1: Baculovi 96.0 0.0063 1.4E-07 49.0 3.2 51 78-128 79-135 (140)
188 PF04063 DUF383: Domain of unk 95.9 0.044 9.5E-07 48.6 8.5 119 269-387 8-157 (192)
189 COG5231 VMA13 Vacuolar H+-ATPa 95.9 0.37 8.1E-06 45.3 14.3 219 229-449 164-427 (432)
190 KOG3036 Protein involved in ce 95.8 0.41 8.9E-06 43.4 14.1 143 312-455 94-252 (293)
191 KOG2930 SCF ubiquitin ligase, 95.8 0.0055 1.2E-07 46.7 2.0 27 96-123 80-106 (114)
192 PF05004 IFRD: Interferon-rela 95.8 1.3 2.8E-05 42.6 18.7 188 261-453 48-260 (309)
193 PF12755 Vac14_Fab1_bd: Vacuol 95.7 0.052 1.1E-06 42.4 7.1 69 296-364 26-95 (97)
194 KOG2611 Neurochondrin/leucine- 95.7 0.83 1.8E-05 45.4 16.5 145 261-407 16-182 (698)
195 KOG1061 Vesicle coat complex A 95.6 0.15 3.2E-06 53.4 12.0 259 168-454 121-419 (734)
196 KOG1517 Guanine nucleotide bin 95.6 0.14 3E-06 55.2 12.0 155 295-450 510-671 (1387)
197 PF10367 Vps39_2: Vacuolar sor 95.6 0.0066 1.4E-07 48.6 1.9 32 76-107 75-108 (109)
198 KOG0213 Splicing factor 3b, su 95.6 0.18 4E-06 52.4 12.3 150 298-451 800-955 (1172)
199 KOG1001 Helicase-like transcri 95.6 0.0023 5E-08 67.4 -1.2 46 80-126 455-501 (674)
200 PF12717 Cnd1: non-SMC mitotic 95.5 0.67 1.5E-05 40.7 14.5 92 227-327 1-93 (178)
201 PF08045 CDC14: Cell division 95.5 0.12 2.6E-06 47.8 9.8 96 353-449 108-206 (257)
202 KOG1941 Acetylcholine receptor 95.5 0.0053 1.1E-07 58.3 1.0 44 79-122 365-413 (518)
203 KOG1824 TATA-binding protein-i 95.5 0.95 2.1E-05 48.7 17.2 267 172-454 9-290 (1233)
204 PF04078 Rcd1: Cell differenti 95.5 0.6 1.3E-05 43.0 14.1 183 269-455 8-223 (262)
205 KOG2259 Uncharacterized conser 95.4 0.05 1.1E-06 55.6 7.6 219 215-455 203-444 (823)
206 COG5215 KAP95 Karyopherin (imp 95.4 2.4 5.2E-05 43.2 18.9 270 169-453 134-440 (858)
207 COG5096 Vesicle coat complex, 95.4 0.11 2.4E-06 55.1 10.3 103 212-327 94-196 (757)
208 KOG1062 Vesicle coat complex A 95.3 2.3 5.1E-05 45.0 19.4 141 261-408 257-415 (866)
209 KOG2611 Neurochondrin/leucine- 95.3 2.3 5E-05 42.4 18.2 175 227-407 24-225 (698)
210 PF14668 RICTOR_V: Rapamycin-i 95.3 0.095 2.1E-06 38.4 6.9 64 314-377 4-70 (73)
211 COG5209 RCD1 Uncharacterized p 95.3 0.5 1.1E-05 42.2 12.4 192 178-373 58-276 (315)
212 KOG1240 Protein kinase contain 95.3 0.5 1.1E-05 51.9 14.7 254 181-452 437-727 (1431)
213 KOG1062 Vesicle coat complex A 95.2 0.86 1.9E-05 48.0 15.8 108 209-327 102-209 (866)
214 COG5231 VMA13 Vacuolar H+-ATPa 95.2 0.67 1.5E-05 43.7 13.6 221 182-407 164-428 (432)
215 KOG1059 Vesicle coat complex A 95.2 0.84 1.8E-05 47.6 15.4 117 258-388 146-267 (877)
216 KOG4151 Myosin assembly protei 95.1 1 2.2E-05 47.6 16.0 201 242-449 491-698 (748)
217 PF09759 Atx10homo_assoc: Spin 95.0 0.081 1.8E-06 41.5 6.1 66 184-252 3-69 (102)
218 KOG1061 Vesicle coat complex A 95.0 0.62 1.4E-05 48.9 14.0 238 169-434 50-293 (734)
219 COG5220 TFB3 Cdk activating ki 94.9 0.0073 1.6E-07 53.5 0.1 48 79-126 10-65 (314)
220 KOG1060 Vesicle coat complex A 94.9 6.2 0.00014 41.9 23.2 139 305-456 295-464 (968)
221 KOG2034 Vacuolar sorting prote 94.8 0.02 4.4E-07 60.4 3.1 36 76-111 814-851 (911)
222 KOG1788 Uncharacterized conser 94.8 2.1 4.5E-05 46.7 17.5 254 187-453 662-985 (2799)
223 KOG2114 Vacuolar assembly/sort 94.8 0.032 6.9E-07 58.5 4.3 43 78-124 839-882 (933)
224 PF08045 CDC14: Cell division 94.7 0.39 8.4E-06 44.4 10.6 97 312-408 106-208 (257)
225 PF14668 RICTOR_V: Rapamycin-i 94.5 0.19 4.2E-06 36.7 6.7 68 353-422 4-71 (73)
226 KOG3161 Predicted E3 ubiquitin 94.5 0.013 2.7E-07 59.3 0.7 40 76-118 8-51 (861)
227 PF04564 U-box: U-box domain; 94.5 0.011 2.4E-07 43.5 0.2 63 114-178 4-68 (73)
228 PF13764 E3_UbLigase_R4: E3 ub 94.5 5.7 0.00012 43.2 20.3 243 205-453 113-409 (802)
229 KOG3113 Uncharacterized conser 94.5 0.049 1.1E-06 48.9 4.1 52 75-129 107-162 (293)
230 PF12755 Vac14_Fab1_bd: Vacuol 94.5 0.24 5.1E-06 38.7 7.6 68 378-448 28-95 (97)
231 PF08569 Mo25: Mo25-like; Int 94.5 1.3 2.9E-05 42.9 14.4 200 250-451 71-284 (335)
232 KOG2999 Regulator of Rac1, req 94.5 0.46 1E-05 47.9 11.2 156 298-454 84-246 (713)
233 KOG2979 Protein involved in DN 94.4 0.048 1E-06 49.4 3.9 45 79-123 176-222 (262)
234 PF11698 V-ATPase_H_C: V-ATPas 94.3 0.19 4.2E-06 40.5 6.7 71 378-449 44-114 (119)
235 PF12031 DUF3518: Domain of un 94.2 0.1 2.3E-06 47.1 5.8 86 352-437 140-232 (257)
236 PF02891 zf-MIZ: MIZ/SP-RING z 94.2 0.041 9E-07 37.1 2.4 44 80-123 3-50 (50)
237 PF11698 V-ATPase_H_C: V-ATPas 94.1 0.039 8.4E-07 44.4 2.5 72 211-285 44-115 (119)
238 KOG3002 Zn finger protein [Gen 94.1 0.047 1E-06 51.7 3.5 60 76-142 45-105 (299)
239 KOG1940 Zn-finger protein [Gen 93.7 0.043 9.3E-07 50.9 2.4 43 79-122 158-204 (276)
240 KOG4362 Transcriptional regula 93.7 0.031 6.8E-07 57.9 1.5 65 79-143 21-87 (684)
241 COG5109 Uncharacterized conser 93.6 0.041 8.9E-07 50.9 1.9 49 75-123 332-385 (396)
242 PF02985 HEAT: HEAT repeat; I 93.5 0.11 2.4E-06 31.0 3.2 28 299-326 2-29 (31)
243 KOG1814 Predicted E3 ubiquitin 93.5 0.07 1.5E-06 51.5 3.5 46 78-123 183-238 (445)
244 PF06371 Drf_GBD: Diaphanous G 93.5 0.4 8.6E-06 42.3 8.2 114 169-284 67-186 (187)
245 PF11701 UNC45-central: Myosin 93.4 0.27 5.9E-06 42.2 6.8 143 258-404 5-156 (157)
246 PF08746 zf-RING-like: RING-li 93.4 0.086 1.9E-06 34.2 2.7 39 82-120 1-43 (43)
247 PF02985 HEAT: HEAT repeat; I 93.3 0.15 3.2E-06 30.4 3.6 29 257-285 1-29 (31)
248 KOG2032 Uncharacterized conser 93.3 5.3 0.00012 40.1 16.0 242 209-451 253-532 (533)
249 PF06371 Drf_GBD: Diaphanous G 93.2 0.69 1.5E-05 40.8 9.4 111 338-449 66-186 (187)
250 PF05004 IFRD: Interferon-rela 93.2 4.2 9.1E-05 39.2 15.2 178 227-407 56-257 (309)
251 COG5240 SEC21 Vesicle coat com 93.2 7.7 0.00017 39.8 17.0 107 169-288 224-335 (898)
252 PF12719 Cnd3: Nuclear condens 93.1 5.3 0.00011 38.2 15.8 154 226-388 39-208 (298)
253 PF07814 WAPL: Wings apart-lik 93.1 5.3 0.00012 39.4 16.1 238 212-454 23-359 (361)
254 COG5181 HSH155 U2 snRNP splice 93.0 1.4 3E-05 45.3 11.6 149 298-452 605-761 (975)
255 PF06025 DUF913: Domain of Unk 92.9 5.7 0.00012 39.4 16.0 127 250-376 100-244 (379)
256 PF08569 Mo25: Mo25-like; Int 92.9 4.5 9.7E-05 39.3 14.9 157 292-449 71-237 (335)
257 smart00504 Ubox Modified RING 92.9 0.13 2.9E-06 36.3 3.4 59 115-176 2-62 (63)
258 PF12717 Cnd1: non-SMC mitotic 92.8 2.1 4.6E-05 37.5 11.7 112 180-308 1-112 (178)
259 KOG1967 DNA repair/transcripti 92.7 0.68 1.5E-05 49.6 9.4 182 210-401 815-1018(1030)
260 KOG1943 Beta-tubulin folding c 92.6 18 0.00038 40.1 19.8 239 169-435 342-596 (1133)
261 KOG4739 Uncharacterized protei 92.6 0.047 1E-06 49.1 0.8 59 80-143 4-64 (233)
262 PHA02825 LAP/PHD finger-like p 92.6 0.14 3.1E-06 42.9 3.6 49 77-126 6-60 (162)
263 KOG4535 HEAT and armadillo rep 92.5 0.14 3E-06 50.7 4.0 176 272-447 407-600 (728)
264 PF14569 zf-UDP: Zinc-binding 92.5 0.15 3.3E-06 37.0 3.2 48 79-126 9-63 (80)
265 KOG4151 Myosin assembly protei 92.3 0.7 1.5E-05 48.7 9.0 147 288-440 495-646 (748)
266 KOG3268 Predicted E3 ubiquitin 92.2 0.12 2.6E-06 43.7 2.7 44 82-125 168-228 (234)
267 KOG1060 Vesicle coat complex A 92.0 11 0.00024 40.2 16.9 205 213-450 38-246 (968)
268 PF12719 Cnd3: Nuclear condens 92.0 6.5 0.00014 37.6 14.9 160 178-350 38-209 (298)
269 PF13764 E3_UbLigase_R4: E3 ub 91.8 18 0.00038 39.5 19.0 236 167-407 116-406 (802)
270 KOG0298 DEAD box-containing he 91.7 0.047 1E-06 59.9 -0.2 48 76-124 1150-1198(1394)
271 KOG0567 HEAT repeat-containing 91.5 4.3 9.4E-05 37.4 12.0 61 338-409 218-282 (289)
272 KOG1943 Beta-tubulin folding c 91.5 7.9 0.00017 42.6 15.7 222 210-454 341-577 (1133)
273 COG5215 KAP95 Karyopherin (imp 91.4 12 0.00026 38.5 15.9 264 170-451 6-293 (858)
274 PF08324 PUL: PUL domain; Int 91.3 2.3 5E-05 40.0 10.9 172 227-398 76-265 (268)
275 PF12460 MMS19_C: RNAPII trans 90.9 2.6 5.7E-05 42.5 11.4 110 211-328 272-396 (415)
276 KOG1967 DNA repair/transcripti 90.8 0.86 1.9E-05 48.8 7.8 146 210-359 867-1018(1030)
277 KOG1078 Vesicle coat complex C 90.7 13 0.00028 39.6 15.9 255 171-450 247-532 (865)
278 PF05918 API5: Apoptosis inhib 90.7 2.5 5.4E-05 43.7 10.9 106 165-286 20-126 (556)
279 KOG1248 Uncharacterized conser 90.7 7 0.00015 43.4 14.6 218 179-410 666-901 (1176)
280 KOG3970 Predicted E3 ubiquitin 90.6 0.49 1.1E-05 41.8 4.9 46 81-126 52-106 (299)
281 COG5236 Uncharacterized conser 90.4 0.18 4E-06 47.3 2.4 50 76-125 58-108 (493)
282 PF08324 PUL: PUL domain; Int 90.2 0.71 1.5E-05 43.5 6.3 152 184-336 80-241 (268)
283 KOG1058 Vesicle coat complex C 90.2 20 0.00044 38.1 16.7 231 181-453 220-466 (948)
284 KOG1812 Predicted E3 ubiquitin 90.0 0.2 4.2E-06 49.7 2.3 49 78-126 145-204 (384)
285 PF11701 UNC45-central: Myosin 89.7 2.6 5.7E-05 36.1 8.8 144 170-323 5-156 (157)
286 PHA02862 5L protein; Provision 89.6 0.29 6.3E-06 40.2 2.6 46 80-126 3-54 (156)
287 KOG4653 Uncharacterized conser 89.4 4.3 9.2E-05 43.5 11.3 172 266-449 737-917 (982)
288 PF12031 DUF3518: Domain of un 89.0 1.1 2.4E-05 40.7 6.0 82 228-310 138-229 (257)
289 KOG1240 Protein kinase contain 88.9 10 0.00022 42.4 14.0 138 262-409 584-727 (1431)
290 PHA03096 p28-like protein; Pro 88.6 0.28 6E-06 46.2 2.1 44 80-123 179-232 (284)
291 PF10272 Tmpp129: Putative tra 88.5 0.65 1.4E-05 45.1 4.6 32 96-127 305-353 (358)
292 KOG4535 HEAT and armadillo rep 88.5 0.81 1.7E-05 45.5 5.2 179 230-408 407-604 (728)
293 COG5209 RCD1 Uncharacterized p 88.3 3.3 7.2E-05 37.2 8.4 147 185-334 118-276 (315)
294 PF14446 Prok-RING_1: Prokaryo 88.3 0.33 7.1E-06 32.9 1.7 30 79-108 5-38 (54)
295 PF07191 zinc-ribbons_6: zinc- 88.2 0.034 7.4E-07 39.8 -3.1 42 79-126 1-42 (70)
296 KOG0915 Uncharacterized conser 88.2 14 0.00031 42.3 14.8 224 228-454 1053-1310(1702)
297 KOG0301 Phospholipase A2-activ 88.1 15 0.00032 38.4 13.9 161 181-350 558-728 (745)
298 KOG2274 Predicted importin 9 [ 88.1 38 0.00083 36.9 17.2 218 181-409 464-691 (1005)
299 KOG0301 Phospholipase A2-activ 88.1 12 0.00027 39.0 13.4 167 227-398 557-737 (745)
300 PF12906 RINGv: RING-variant d 87.8 0.26 5.7E-06 32.7 1.1 39 82-120 1-47 (47)
301 KOG2274 Predicted importin 9 [ 87.7 18 0.0004 39.1 14.7 175 269-449 504-688 (1005)
302 KOG4653 Uncharacterized conser 87.3 17 0.00036 39.2 14.1 209 229-448 742-962 (982)
303 PF06025 DUF913: Domain of Unk 87.1 25 0.00055 34.9 14.9 116 296-411 105-236 (379)
304 KOG4445 Uncharacterized conser 87.0 0.21 4.6E-06 46.1 0.3 49 78-126 114-187 (368)
305 PF11865 DUF3385: Domain of un 86.2 10 0.00022 32.6 10.3 144 297-447 10-154 (160)
306 COG3813 Uncharacterized protei 85.4 0.89 1.9E-05 32.4 2.7 36 97-135 27-62 (84)
307 PF12460 MMS19_C: RNAPII trans 85.4 44 0.00095 33.7 16.3 186 257-452 190-396 (415)
308 PF08167 RIX1: rRNA processing 85.3 6.4 0.00014 34.0 8.7 108 257-365 26-143 (165)
309 KOG0825 PHD Zn-finger protein 85.1 0.64 1.4E-05 48.6 2.6 49 74-122 91-151 (1134)
310 KOG0414 Chromosome condensatio 85.1 6.9 0.00015 43.4 10.3 129 179-325 935-1063(1251)
311 KOG3665 ZYG-1-like serine/thre 84.1 12 0.00027 40.2 11.9 191 190-403 494-693 (699)
312 KOG0309 Conserved WD40 repeat- 84.0 0.69 1.5E-05 48.2 2.3 44 79-123 1028-1074(1081)
313 PF05918 API5: Apoptosis inhib 83.9 13 0.00028 38.6 11.4 119 309-446 34-158 (556)
314 PF05605 zf-Di19: Drought indu 83.9 0.54 1.2E-05 32.2 1.1 39 78-123 1-40 (54)
315 PF14500 MMS19_N: Dos2-interac 83.9 38 0.00082 31.7 14.8 181 261-452 4-239 (262)
316 KOG4718 Non-SMC (structural ma 83.3 0.68 1.5E-05 40.7 1.7 46 80-126 182-228 (235)
317 COG0068 HypF Hydrogenase matur 82.9 1 2.3E-05 47.0 3.1 50 76-125 98-184 (750)
318 PF03854 zf-P11: P-11 zinc fin 82.6 0.47 1E-05 30.9 0.3 42 82-126 5-47 (50)
319 PF10571 UPF0547: Uncharacteri 82.2 0.76 1.6E-05 26.2 1.1 21 81-101 2-24 (26)
320 PF07800 DUF1644: Protein of u 81.6 0.45 9.7E-06 40.0 -0.0 20 78-97 1-20 (162)
321 KOG2062 26S proteasome regulat 80.3 50 0.0011 35.2 13.8 53 351-412 570-623 (929)
322 KOG3899 Uncharacterized conser 80.0 1.1 2.3E-05 41.4 1.8 30 97-126 325-366 (381)
323 cd03568 VHS_STAM VHS domain fa 80.0 12 0.00025 31.6 8.0 73 378-451 38-111 (144)
324 KOG3579 Predicted E3 ubiquitin 79.8 0.88 1.9E-05 41.8 1.2 42 78-119 267-316 (352)
325 KOG2062 26S proteasome regulat 79.3 27 0.00059 37.1 11.6 98 295-407 552-653 (929)
326 KOG4464 Signaling protein RIC- 79.2 57 0.0012 32.3 13.1 159 246-410 41-234 (532)
327 PLN02189 cellulose synthase 78.8 1.2 2.6E-05 48.9 2.0 46 80-125 35-87 (1040)
328 KOG1820 Microtubule-associated 78.3 37 0.0008 37.2 12.9 175 178-365 264-443 (815)
329 KOG0915 Uncharacterized conser 78.2 19 0.00042 41.3 10.8 168 257-431 999-1182(1702)
330 KOG1566 Conserved protein Mo25 78.0 66 0.0014 30.7 15.3 215 168-387 79-310 (342)
331 PF12530 DUF3730: Protein of u 78.0 56 0.0012 30.0 16.1 124 226-364 13-150 (234)
332 KOG0883 Cyclophilin type, U bo 77.7 1.8 3.9E-05 41.7 2.6 48 79-127 40-87 (518)
333 KOG1428 Inhibitor of type V ad 76.9 1.4 3.1E-05 49.4 1.9 50 78-127 3485-3546(3738)
334 KOG0211 Protein phosphatase 2A 76.9 98 0.0021 33.7 15.5 206 226-446 449-660 (759)
335 PLN02436 cellulose synthase A 76.9 1.5 3.2E-05 48.3 2.0 47 79-125 36-89 (1094)
336 KOG1078 Vesicle coat complex C 76.9 1.1E+02 0.0025 32.9 17.3 169 227-410 258-459 (865)
337 KOG1991 Nuclear transport rece 76.4 81 0.0018 34.8 14.5 137 209-349 409-558 (1010)
338 PF06844 DUF1244: Protein of u 76.3 1.6 3.5E-05 30.7 1.4 13 100-112 11-23 (68)
339 cd03569 VHS_Hrs_Vps27p VHS dom 75.8 20 0.00043 30.1 8.2 73 378-451 42-115 (142)
340 PF11707 Npa1: Ribosome 60S bi 75.7 81 0.0018 30.6 16.8 183 169-368 28-240 (330)
341 KOG2025 Chromosome condensatio 75.5 46 0.001 35.3 12.0 70 257-326 86-155 (892)
342 PF12530 DUF3730: Protein of u 75.4 66 0.0014 29.5 12.4 137 258-409 2-153 (234)
343 PLN02638 cellulose synthase A 75.4 1.7 3.6E-05 48.0 2.0 47 79-125 17-70 (1079)
344 PF05883 Baculo_RING: Baculovi 75.4 1.6 3.5E-05 35.8 1.4 44 79-123 26-78 (134)
345 KOG1243 Protein kinase [Genera 75.3 26 0.00057 36.9 10.3 179 256-448 330-513 (690)
346 KOG3665 ZYG-1-like serine/thre 75.3 35 0.00076 36.9 11.8 195 237-449 494-696 (699)
347 smart00638 LPD_N Lipoprotein N 75.0 95 0.0021 32.7 15.1 129 298-445 394-540 (574)
348 KOG1020 Sister chromatid cohes 74.9 72 0.0016 37.0 14.0 140 259-410 819-963 (1692)
349 COG5627 MMS21 DNA repair prote 74.7 2.6 5.6E-05 37.8 2.6 57 79-135 189-249 (275)
350 PF11865 DUF3385: Domain of un 74.7 25 0.00055 30.2 8.8 141 257-406 11-156 (160)
351 KOG2025 Chromosome condensatio 74.4 36 0.00078 36.1 10.9 105 296-404 84-190 (892)
352 KOG1058 Vesicle coat complex C 73.8 44 0.00096 35.7 11.4 226 181-437 148-412 (948)
353 KOG1100 Predicted E3 ubiquitin 73.8 1.5 3.3E-05 39.4 1.0 40 82-126 161-201 (207)
354 PF14225 MOR2-PAG1_C: Cell mor 73.5 45 0.00097 31.2 10.7 162 229-409 77-256 (262)
355 cd03561 VHS VHS domain family; 73.3 25 0.00054 29.0 8.2 74 378-452 38-114 (133)
356 COG5098 Chromosome condensatio 73.2 34 0.00074 36.2 10.4 106 340-449 301-414 (1128)
357 KOG4231 Intracellular membrane 72.5 4.4 9.5E-05 40.8 3.9 169 277-450 226-399 (763)
358 PF11707 Npa1: Ribosome 60S bi 72.3 98 0.0021 30.1 16.2 162 170-331 58-242 (330)
359 KOG2032 Uncharacterized conser 72.0 98 0.0021 31.5 12.9 138 266-407 268-415 (533)
360 KOG0211 Protein phosphatase 2A 71.8 94 0.002 33.9 13.8 186 257-451 438-626 (759)
361 KOG3053 Uncharacterized conser 71.8 2 4.4E-05 39.0 1.3 52 74-125 15-82 (293)
362 PLN02195 cellulose synthase A 71.4 2.8 6E-05 45.9 2.4 45 81-125 8-59 (977)
363 KOG3842 Adaptor protein Pellin 70.5 3.7 8.1E-05 38.4 2.7 49 77-126 339-415 (429)
364 PF14500 MMS19_N: Dos2-interac 70.4 95 0.0021 29.1 16.5 211 178-410 10-240 (262)
365 KOG1815 Predicted E3 ubiquitin 70.2 3.2 7E-05 42.2 2.5 36 77-112 68-104 (444)
366 PF06906 DUF1272: Protein of u 70.1 5 0.00011 27.3 2.5 27 99-128 29-55 (57)
367 PLN02400 cellulose synthase 69.6 2.1 4.5E-05 47.4 1.0 47 79-125 36-89 (1085)
368 cd03567 VHS_GGA VHS domain fam 69.6 33 0.00071 28.7 8.0 72 378-450 39-116 (139)
369 KOG1020 Sister chromatid cohes 69.5 81 0.0018 36.6 12.9 107 296-411 815-925 (1692)
370 PF14353 CpXC: CpXC protein 69.3 3.5 7.6E-05 33.9 2.2 45 80-125 2-49 (128)
371 COG5183 SSM4 Protein involved 68.9 4.9 0.00011 42.6 3.4 50 77-126 10-67 (1175)
372 PLN02915 cellulose synthase A 68.9 3.9 8.4E-05 45.1 2.9 48 78-125 14-68 (1044)
373 PF10363 DUF2435: Protein of u 68.9 16 0.00034 28.2 5.5 70 340-411 5-76 (92)
374 PF09889 DUF2116: Uncharacteri 68.8 6.1 0.00013 27.5 2.9 17 113-129 2-18 (59)
375 PF11791 Aconitase_B_N: Aconit 68.4 70 0.0015 27.0 9.5 44 353-409 80-125 (154)
376 PF01347 Vitellogenin_N: Lipop 67.5 50 0.0011 35.1 11.1 77 257-350 487-570 (618)
377 KOG3799 Rab3 effector RIM1 and 67.2 12 0.00026 30.4 4.6 38 76-125 62-100 (169)
378 PF00790 VHS: VHS domain; Int 66.6 28 0.00061 29.0 7.2 73 379-452 44-120 (140)
379 KOG2933 Uncharacterized conser 66.5 56 0.0012 31.2 9.5 131 299-443 90-227 (334)
380 COG5218 YCG1 Chromosome conden 66.5 30 0.00064 35.9 8.2 104 296-409 90-198 (885)
381 KOG0414 Chromosome condensatio 66.2 23 0.0005 39.6 7.9 88 352-450 939-1027(1251)
382 KOG2932 E3 ubiquitin ligase in 66.1 2.5 5.3E-05 39.5 0.6 43 79-124 90-133 (389)
383 PF07814 WAPL: Wings apart-lik 66.1 93 0.002 30.7 11.8 91 339-431 22-116 (361)
384 KOG2068 MOT2 transcription fac 65.5 6 0.00013 37.6 3.1 48 80-128 250-301 (327)
385 COG4068 Uncharacterized protei 65.1 7.1 0.00015 26.7 2.5 28 113-140 7-34 (64)
386 PF12231 Rif1_N: Rap1-interact 65.1 97 0.0021 30.7 11.8 180 267-452 4-206 (372)
387 KOG2137 Protein kinase [Signal 65.1 2E+02 0.0043 30.8 14.5 131 296-434 388-521 (700)
388 PF14726 RTTN_N: Rotatin, an a 65.0 31 0.00066 26.9 6.4 65 257-321 31-95 (98)
389 cd00350 rubredoxin_like Rubred 64.7 5.3 0.00012 24.1 1.8 10 114-123 17-26 (33)
390 KOG1949 Uncharacterized conser 64.6 90 0.0019 33.3 11.3 149 257-409 175-333 (1005)
391 PRK14707 hypothetical protein; 64.4 3.4E+02 0.0075 33.3 18.8 256 181-445 178-440 (2710)
392 COG5116 RPN2 26S proteasome re 63.9 17 0.00037 37.3 6.0 64 377-448 585-648 (926)
393 smart00288 VHS Domain present 63.4 49 0.0011 27.3 7.9 71 379-450 39-111 (133)
394 PF10363 DUF2435: Protein of u 62.2 21 0.00046 27.4 5.1 70 259-329 6-75 (92)
395 TIGR01562 FdhE formate dehydro 62.0 2.3 5E-05 40.5 -0.3 44 79-123 184-233 (305)
396 KOG1952 Transcription factor N 61.2 5.6 0.00012 42.5 2.2 44 78-121 190-243 (950)
397 KOG4185 Predicted E3 ubiquitin 60.9 2.3 5.1E-05 40.6 -0.5 44 80-123 208-265 (296)
398 KOG1788 Uncharacterized conser 60.9 2.7E+02 0.0059 31.5 14.3 80 330-409 900-984 (2799)
399 KOG0314 Predicted E3 ubiquitin 60.6 5.8 0.00013 39.6 2.2 68 75-144 215-286 (448)
400 PF04216 FdhE: Protein involve 60.5 1.2 2.5E-05 42.6 -2.7 45 79-124 172-221 (290)
401 KOG2956 CLIP-associating prote 60.5 2E+02 0.0043 29.2 13.3 178 170-363 288-475 (516)
402 PF04499 SAPS: SIT4 phosphatas 59.5 67 0.0015 33.0 9.6 113 337-451 20-150 (475)
403 PF12830 Nipped-B_C: Sister ch 58.6 1.3E+02 0.0028 26.5 13.7 144 257-411 9-171 (187)
404 KOG0269 WD40 repeat-containing 58.4 8.2 0.00018 40.8 2.8 46 80-126 780-829 (839)
405 PRK06266 transcription initiat 58.2 19 0.00042 31.5 4.8 53 77-145 115-168 (178)
406 PF13251 DUF4042: Domain of un 57.9 1.3E+02 0.0029 26.4 11.0 142 183-329 2-177 (182)
407 COG5116 RPN2 26S proteasome re 57.5 65 0.0014 33.4 8.8 99 295-408 549-651 (926)
408 PF08167 RIX1: rRNA processing 57.4 1.2E+02 0.0027 25.9 9.8 112 298-413 26-149 (165)
409 KOG1609 Protein involved in mR 56.9 6.9 0.00015 37.7 2.0 49 79-127 78-136 (323)
410 cd03565 VHS_Tom1 VHS domain fa 56.9 80 0.0017 26.4 8.2 74 378-451 39-116 (141)
411 cd00730 rubredoxin Rubredoxin; 56.4 7.2 0.00016 26.2 1.4 18 70-87 25-42 (50)
412 KOG1566 Conserved protein Mo25 56.1 1.9E+02 0.0042 27.7 15.4 198 250-450 74-286 (342)
413 PF14726 RTTN_N: Rotatin, an a 55.9 68 0.0015 25.0 6.9 68 377-447 30-97 (98)
414 PF08389 Xpo1: Exportin 1-like 55.3 1.1E+02 0.0023 25.2 8.9 125 230-360 4-148 (148)
415 PF13240 zinc_ribbon_2: zinc-r 55.3 8.4 0.00018 21.2 1.3 8 116-123 15-22 (23)
416 PF08216 CTNNBL: Catenin-beta- 54.9 13 0.00028 29.5 2.8 45 229-274 61-105 (108)
417 KOG1820 Microtubule-associated 54.7 3.2E+02 0.0068 30.3 14.0 179 260-448 257-441 (815)
418 PF09538 FYDLN_acid: Protein o 54.6 8.8 0.00019 30.5 1.9 14 114-127 26-39 (108)
419 KOG1991 Nuclear transport rece 54.0 3.6E+02 0.0077 30.2 16.4 130 256-388 410-558 (1010)
420 PF12463 DUF3689: Protein of u 53.7 2.1E+02 0.0045 27.4 12.7 123 291-413 3-179 (303)
421 PF01347 Vitellogenin_N: Lipop 53.1 21 0.00046 38.0 5.1 96 210-323 486-586 (618)
422 KOG0567 HEAT repeat-containing 52.9 77 0.0017 29.5 7.8 56 296-361 217-276 (289)
423 PF10083 DUF2321: Uncharacteri 52.8 16 0.00036 30.7 3.2 90 98-201 27-120 (158)
424 PF04388 Hamartin: Hamartin pr 52.4 3.4E+02 0.0073 29.4 14.6 139 257-412 5-145 (668)
425 TIGR00143 hypF [NiFe] hydrogen 52.4 7.4 0.00016 42.0 1.5 51 76-126 65-152 (711)
426 PF10235 Cript: Microtubule-as 52.3 9.6 0.00021 29.0 1.7 38 79-126 44-81 (90)
427 KOG1812 Predicted E3 ubiquitin 52.0 6.1 0.00013 39.3 0.7 35 78-112 305-344 (384)
428 TIGR00373 conserved hypothetic 51.7 11 0.00024 32.3 2.2 35 77-127 107-141 (158)
429 PRK14707 hypothetical protein; 51.6 5.6E+02 0.012 31.7 20.8 230 170-409 837-1078(2710)
430 COG3492 Uncharacterized protei 51.5 7.9 0.00017 29.1 1.1 13 100-112 42-54 (104)
431 cd03561 VHS VHS domain family; 51.3 64 0.0014 26.6 6.7 74 168-243 37-112 (133)
432 cd03568 VHS_STAM VHS domain fa 51.3 59 0.0013 27.3 6.5 72 257-328 38-112 (144)
433 smart00638 LPD_N Lipoprotein N 51.0 1.4E+02 0.003 31.5 10.8 177 258-453 313-512 (574)
434 PF14663 RasGEF_N_2: Rapamycin 50.7 59 0.0013 26.1 6.2 39 298-336 9-47 (115)
435 PF14225 MOR2-PAG1_C: Cell mor 50.5 2.2E+02 0.0047 26.7 12.7 135 169-323 112-251 (262)
436 smart00288 VHS Domain present 49.9 53 0.0012 27.1 6.0 69 297-365 37-111 (133)
437 KOG2933 Uncharacterized conser 49.8 51 0.0011 31.4 6.3 141 168-324 88-232 (334)
438 KOG2137 Protein kinase [Signal 49.8 1.2E+02 0.0026 32.3 9.6 136 169-315 390-526 (700)
439 cd03569 VHS_Hrs_Vps27p VHS dom 49.4 69 0.0015 26.9 6.6 71 339-409 42-116 (142)
440 PF12773 DZR: Double zinc ribb 48.7 15 0.00032 24.4 2.0 11 115-125 30-40 (50)
441 PF06012 DUF908: Domain of Unk 48.2 66 0.0014 31.2 7.3 75 271-345 237-323 (329)
442 PRK03564 formate dehydrogenase 48.2 6.3 0.00014 37.7 0.1 45 78-123 186-235 (309)
443 PF14666 RICTOR_M: Rapamycin-i 47.6 2.2E+02 0.0048 26.0 10.8 144 270-450 78-225 (226)
444 COG1592 Rubrerythrin [Energy p 47.2 13 0.00028 32.0 1.9 13 79-91 134-146 (166)
445 PRK04023 DNA polymerase II lar 46.3 24 0.00051 39.0 4.0 47 78-127 625-676 (1121)
446 COG1675 TFA1 Transcription ini 46.1 31 0.00068 30.0 4.1 53 78-146 112-165 (176)
447 PF04710 Pellino: Pellino; In 46.0 6.7 0.00015 38.2 0.0 48 79-126 328-402 (416)
448 PRK11088 rrmA 23S rRNA methylt 45.8 9.9 0.00021 35.8 1.1 25 80-104 3-30 (272)
449 PF06676 DUF1178: Protein of u 45.2 23 0.00049 29.9 3.0 28 96-123 9-41 (148)
450 KOG2169 Zn-finger transcriptio 45.1 21 0.00046 38.1 3.5 70 71-141 298-372 (636)
451 PF10521 DUF2454: Protein of u 44.7 1.4E+02 0.003 28.3 8.7 70 257-326 120-203 (282)
452 KOG4464 Signaling protein RIC- 44.2 3.4E+02 0.0075 27.2 11.2 133 300-432 48-198 (532)
453 PF06937 EURL: EURL protein; 44.1 32 0.00069 31.8 3.9 37 80-119 31-75 (285)
454 PF08506 Cse1: Cse1; InterPro 43.4 92 0.002 30.8 7.5 134 181-321 225-370 (370)
455 PF04641 Rtf2: Rtf2 RING-finge 43.2 20 0.00043 33.6 2.7 37 76-112 31-68 (260)
456 PF00301 Rubredoxin: Rubredoxi 42.6 12 0.00025 24.8 0.7 18 70-87 25-42 (47)
457 COG4530 Uncharacterized protei 42.3 19 0.00041 28.2 1.9 29 78-106 8-41 (129)
458 PF13811 DUF4186: Domain of un 42.3 15 0.00033 28.9 1.4 20 91-111 64-86 (111)
459 PRK11595 DNA utilization prote 42.3 19 0.00042 32.9 2.4 39 81-125 7-45 (227)
460 PF04064 DUF384: Domain of unk 42.2 1.2E+02 0.0025 21.1 5.7 47 360-407 2-49 (58)
461 TIGR02300 FYDLN_acid conserved 42.1 19 0.00041 29.3 2.0 13 78-90 8-20 (129)
462 smart00132 LIM Zinc-binding do 41.9 16 0.00034 22.3 1.2 36 81-125 1-38 (39)
463 PF06012 DUF908: Domain of Unk 41.5 1.1E+02 0.0024 29.7 7.6 67 352-419 238-308 (329)
464 smart00249 PHD PHD zinc finger 41.4 9.1 0.0002 24.4 0.1 28 81-108 1-31 (47)
465 cd00729 rubredoxin_SM Rubredox 41.4 12 0.00026 22.8 0.6 9 115-123 19-27 (34)
466 PF12726 SEN1_N: SEN1 N termin 41.2 3.1E+02 0.0068 29.9 11.8 148 301-450 445-608 (727)
467 COG2176 PolC DNA polymerase II 41.0 21 0.00044 40.2 2.6 45 71-127 906-952 (1444)
468 cd03567 VHS_GGA VHS domain fam 40.7 1.1E+02 0.0024 25.5 6.5 70 257-326 39-116 (139)
469 KOG1829 Uncharacterized conser 40.5 12 0.00026 38.8 0.9 40 78-121 510-557 (580)
470 PF04821 TIMELESS: Timeless pr 40.3 3.2E+02 0.0068 25.6 10.4 37 290-326 33-72 (266)
471 PF15616 TerY-C: TerY-C metal 39.8 11 0.00024 31.0 0.4 45 76-127 74-118 (131)
472 PF08216 CTNNBL: Catenin-beta- 39.6 42 0.0009 26.6 3.5 36 354-389 64-99 (108)
473 KOG2462 C2H2-type Zn-finger pr 39.5 11 0.00024 34.9 0.3 51 77-127 159-228 (279)
474 PRK14714 DNA polymerase II lar 39.5 32 0.0007 39.0 3.8 64 79-142 667-740 (1337)
475 KOG0396 Uncharacterized conser 38.9 22 0.00048 34.4 2.2 72 80-158 305-379 (389)
476 COG5656 SXM1 Importin, protein 38.6 5.5E+02 0.012 28.0 15.0 134 209-346 407-550 (970)
477 KOG2073 SAP family cell cycle 38.5 99 0.0022 34.0 7.2 87 370-456 183-274 (838)
478 PF12660 zf-TFIIIC: Putative z 38.5 2.3 4.9E-05 33.3 -3.7 46 80-126 15-67 (99)
479 COG5098 Chromosome condensatio 38.5 2.2E+02 0.0048 30.5 9.2 106 299-410 301-418 (1128)
480 cd08050 TAF6 TATA Binding Prot 38.1 3.3E+02 0.0071 26.6 10.4 107 257-363 211-338 (343)
481 PF09723 Zn-ribbon_8: Zinc rib 37.6 6 0.00013 25.4 -1.2 9 114-122 26-34 (42)
482 PF04423 Rad50_zn_hook: Rad50 37.5 11 0.00024 25.7 -0.0 12 116-127 22-33 (54)
483 PF03130 HEAT_PBS: PBS lyase H 37.0 34 0.00074 19.3 2.0 26 313-348 1-26 (27)
484 KOG0827 Predicted E3 ubiquitin 37.0 9 0.0002 37.1 -0.7 48 81-129 198-249 (465)
485 PF13248 zf-ribbon_3: zinc-rib 36.3 7.2 0.00016 22.1 -0.9 9 115-123 17-25 (26)
486 TIGR01206 lysW lysine biosynth 35.5 18 0.00039 24.7 0.8 32 79-125 2-33 (54)
487 COG4306 Uncharacterized protei 35.3 38 0.00082 27.3 2.7 24 100-127 29-52 (160)
488 PF07503 zf-HYPF: HypF finger; 35.3 33 0.00072 21.1 1.8 24 102-125 2-32 (35)
489 PF07923 N1221: N1221-like pro 35.2 59 0.0013 31.0 4.6 54 295-348 58-126 (293)
490 PF07539 DRIM: Down-regulated 35.1 82 0.0018 26.4 4.8 78 296-387 16-98 (141)
491 KOG4231 Intracellular membrane 34.8 49 0.0011 33.7 3.9 66 261-326 333-399 (763)
492 smart00531 TFIIE Transcription 34.4 23 0.0005 29.9 1.5 38 77-126 97-135 (147)
493 PF04499 SAPS: SIT4 phosphatas 33.9 2.5E+02 0.0055 28.9 9.1 114 202-325 13-147 (475)
494 PF00096 zf-C2H2: Zinc finger, 33.7 12 0.00026 20.0 -0.2 12 81-92 2-13 (23)
495 cd00197 VHS_ENTH_ANTH VHS, ENT 33.5 2.4E+02 0.0052 22.2 7.7 69 379-448 39-113 (115)
496 PRK14559 putative protein seri 33.4 20 0.00044 38.1 1.2 39 80-127 2-40 (645)
497 PF13901 DUF4206: Domain of un 33.3 35 0.00075 30.6 2.5 38 79-122 152-197 (202)
498 PRK00420 hypothetical protein; 33.2 15 0.00033 29.3 0.2 27 81-125 25-51 (112)
499 smart00734 ZnF_Rad18 Rad18-lik 33.2 20 0.00044 20.3 0.6 8 82-89 4-11 (26)
500 PF13834 DUF4193: Domain of un 33.1 13 0.00029 28.7 -0.2 31 75-105 66-98 (99)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=5.4e-28 Score=268.32 Aligned_cols=278 Identities=18% Similarity=0.267 Sum_probs=243.1
Q ss_pred hhhhhhHHhhc-C--CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 168 SHLNSLLEKMS-S--SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 168 ~~l~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
..+..+|+.|. . +++.+..|+..|+.+++.++.+|..|.+..|+||.|+.+|+++ +..+++.|+.+|.+++.+
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg----~~~vk~nAaaaL~nLS~~ 88 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG----TLGAKVNAAAVLGVLCKE 88 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC----CHHHHHHHHHHHHHHhcC
Confidence 46888999995 2 5688999999999999999999999986689999999999875 889999999999999999
Q ss_pred chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC---cchhH-hhccCchHHHHHHhhcCC---hHHHHHH
Q 012677 245 DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD---SNKLI-IGKLGAMTPLIDLLEEGH---PLAMKDV 317 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~---~~~~~-i~~~g~i~~Lv~lL~~~~---~~~~~~a 317 (458)
++++..++.. |++|.|+.+|++++.+.+++|+++|++|+.+. .++.. ++..|+||+|+.++++++ ..++..+
T Consensus 89 e~nk~~Iv~~-GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~A 167 (2102)
T PLN03200 89 EDLRVKVLLG-GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLL 167 (2102)
T ss_pred HHHHHHHHHc-CChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHH
Confidence 9999999985 69999999999999999999999999999873 44544 456999999999999873 3356778
Q ss_pred HHHHHHhcccccchhH-HHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChh
Q 012677 318 ASAIFSLCILLENKRR-AVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCER 393 (458)
Q Consensus 318 ~~aL~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 393 (458)
+.+|+||+.+.+++.. +++.|++|.|+.+|.++ ..+..|+.+|.+++. +++.+..++++|+||.|+++|+++.+..
T Consensus 168 v~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~ 247 (2102)
T PLN03200 168 TGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVS 247 (2102)
T ss_pred HHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChH
Confidence 8999999999998755 68999999999999977 678899999999987 5889999999999999999998655579
Q ss_pred HHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCC---------HHHHHHHHHHHHHHHhh
Q 012677 394 NKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGT---------SRAKRKANGILERLNKA 451 (458)
Q Consensus 394 ~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~---------~~~~~~A~~~L~~l~~~ 451 (458)
+|++|+++|.+|+.++.+ .+..+.+.|+++.|++++.+.+ ...+++|.|+|.|||+-
T Consensus 248 VRE~AA~AL~nLAs~s~e-~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 248 VRAEAAGALEALSSQSKE-AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 999999999999998754 4566667999999999987544 34699999999999973
No 2
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-28 Score=225.20 Aligned_cols=279 Identities=17% Similarity=0.241 Sum_probs=252.5
Q ss_pred hhhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..+..|+.++ ....++|..++++|.+|+.. +.++..|.. .|++.+|..+-++. +..++.++..+|.|+....+
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~-sGaL~pltrLaksk----dirvqrnatgaLlnmThs~E 199 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIAR-SGALEPLTRLAKSK----DIRVQRNATGALLNMTHSRE 199 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhh-ccchhhhHhhcccc----hhhHHHHHHHHHHHhhhhhh
Confidence 3566676666 45688999999999999986 889999999 89999999966653 88999999999999999999
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccC--chHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLG--AMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
||+.++.+| ++|.||.++++++.++|..++.++.|++.+..+++.+.+.| .|+.||+++++++++++..|..+|.+|
T Consensus 200 nRr~LV~aG-~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 200 NRRVLVHAG-GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNL 278 (550)
T ss_pred hhhhhhccC-CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhh
Confidence 999999985 99999999999999999999999999999999999999977 999999999999999999999999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
+.+.+....++++|.+|.++++|+++ +..-..+..+.|++-+|-+...|+++|.+.+||++|+-.+++++|-+|+.+|
T Consensus 279 asdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 279 ASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL 358 (550)
T ss_pred cccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence 99999999999999999999999988 5677788899999999999999999999999999999888889999999999
Q ss_pred HHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 403 YNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 403 ~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+||+...+.. +..+.+.|+++.+.+|+.++...++..-...+..|+-....
T Consensus 359 rnLAasse~n-~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 359 RNLAASSEHN-VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred HHHhhhhhhh-hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 9999876644 35666799999999999999999998888888888755443
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=3e-27 Score=262.43 Aligned_cols=282 Identities=22% Similarity=0.219 Sum_probs=244.8
Q ss_pred hhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 167 RSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 167 ~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.+.++.|++.|. ++...|..|+..|++++..++.++..|.+ .|+||.|+++|+++ +..+++.|+++|.|++.++
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie-aGaIP~LV~LL~s~----~~~iqeeAawAL~NLa~~~ 519 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA-AGGIPPLVQLLETG----SQKAKEDSATVLWNLCCHS 519 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCCc
Confidence 357899999996 56788999999999999989999999999 99999999999975 8899999999999999988
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcch-----------------------------------
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK----------------------------------- 290 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~----------------------------------- 290 (458)
++.+.++...|++|.|+++|++++...++.|+++|.+|+...++.
T Consensus 520 ~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d 599 (2102)
T PLN03200 520 EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLED 599 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhH
Confidence 776766644469999999999999999999999999996432211
Q ss_pred ---hHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc-cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhc
Q 012677 291 ---LIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL-ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLS 364 (458)
Q Consensus 291 ---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La 364 (458)
......|+|+.|+.+|+++++..++.|+++|.+++... +++..++..|++++|+.+|+++ ++++.++++|.+|+
T Consensus 600 ~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 600 LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALS 679 (2102)
T ss_pred HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 01113689999999999999999999999999999855 4678899999999999999977 67899999999999
Q ss_pred C--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHH
Q 012677 365 S--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKAN 442 (458)
Q Consensus 365 ~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~ 442 (458)
. .++++..+++.|+|++|+++|... +.++++.|+.+|.||+...+.. .++. ..|++++|++++++|+++.|++|+
T Consensus 680 ~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~~e~~-~ei~-~~~~I~~Lv~lLr~G~~~~k~~Aa 756 (2102)
T PLN03200 680 RSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSDPEVA-AEAL-AEDIILPLTRVLREGTLEGKRNAA 756 (2102)
T ss_pred hCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcCchHH-HHHH-hcCcHHHHHHHHHhCChHHHHHHH
Confidence 6 666788889999999999999965 5999999999999999988754 3444 478899999999999999999999
Q ss_pred HHHHHHHhhHhhhh
Q 012677 443 GILERLNKAALIVH 456 (458)
Q Consensus 443 ~~L~~l~~~~~~~~ 456 (458)
++|.+|++..+..+
T Consensus 757 ~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 757 RALAQLLKHFPVDD 770 (2102)
T ss_pred HHHHHHHhCCChhH
Confidence 99999998877543
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.3e-27 Score=228.10 Aligned_cols=280 Identities=17% Similarity=0.165 Sum_probs=243.0
Q ss_pred hhhhhhHHhhc--CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMS--SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+.++.+|+.|+ .++..|.+|+++|.+++.++.+....+++ +|++|.++.+|.++ +..+++.|+++|+|++.+.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~-agavp~fi~Ll~s~----~~~v~eQavWALgNIagds 183 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD-AGAVPIFIQLLSSP----SADVREQAVWALGNIAGDS 183 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc-CCchHHHHHHhcCC----cHHHHHHHHHHHhccccCC
Confidence 57899999996 33788999999999999999988889999 99999999999986 8899999999999999998
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCH-HHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTI-ETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
+..+.++-..|+++.|+.++...+. ....+++|+|.||+........+.. ..++|.|..++.+.|+++...|+|||.+
T Consensus 184 ~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsy 263 (514)
T KOG0166|consen 184 PDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSY 263 (514)
T ss_pred hHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8655555445699999999988764 7899999999999987754444444 6789999999999999999999999999
Q ss_pred hccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHH
Q 012677 324 LCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCA 399 (458)
Q Consensus 324 L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 399 (458)
|+.+.. ....+++.|+++.|+.+|... .++..|++++.|++. ++..-+.+++.|+++.|..++..+....++..|+
T Consensus 264 Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAc 343 (514)
T KOG0166|consen 264 LTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEAC 343 (514)
T ss_pred HhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHH
Confidence 997665 455578899999999999877 578889999999988 5666777799999999999999655577999999
Q ss_pred HHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 400 AILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 400 ~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
|+|.||+.++.....+++ .+|.+|.|+.++++++.++|..|+|++.|++....
T Consensus 344 W~iSNItAG~~~qiqaVi-da~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVI-DANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHHhhcCCHHHHHHHH-HcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 999999999886665555 58999999999999999999999999999986544
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-26 Score=212.44 Aligned_cols=277 Identities=19% Similarity=0.263 Sum_probs=251.5
Q ss_pred hhhhhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 166 SRSHLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 166 ~~~~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.+++..+++.- +.+..+|..+...|.+++. +.++|+.++. +|++|.|+.+++++ |++++..+..++.|++.+
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~-aG~lpvLVsll~s~----d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVH-AGGLPVLVSLLKSG----DLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhc-cCCchhhhhhhccC----ChhHHHHHHHHhhhhhhh
Confidence 345778888843 3568899999999999997 5889999998 99999999999986 999999999999999999
Q ss_pred chhhhhhhcCC-CCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 245 DENKRLVAENP-LAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 245 ~~~~~~i~~~~-~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
..+|+.+++++ ..+|.||+++++++..++-.|..+|.||+.+.++...|+++|++|.+|++|+++..........++.|
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 99999998863 48999999999999999999999999999999999999999999999999999877778888999999
Q ss_pred hcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHH
Q 012677 324 LCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCA 399 (458)
Q Consensus 324 L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 399 (458)
++.++-|-..|+++|.+.+||++|+-+ +++..|..+|++|+. ++.++..|.++|+||.|.+++.++. -++|+.-.
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p-vsvqseis 397 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP-VSVQSEIS 397 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC-hhHHHHHH
Confidence 999999999999999999999999855 589999999999998 7889999999999999999999765 99999999
Q ss_pred HHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 400 AILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 400 ~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
+++..|+.....+ ..+.+.|.++.|+.+..+.+..++.+|+.+|.|+|.-
T Consensus 398 ac~a~Lal~d~~k--~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 398 ACIAQLALNDNDK--EALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHHHHhccccH--HHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 9999999877654 5566799999999999999999999999999999853
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1e-24 Score=213.45 Aligned_cols=283 Identities=17% Similarity=0.174 Sum_probs=247.6
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
++++.+++++. ++..++..|+++|++++.+++.+|..+.+ .|++++|+.++... .......++.|+|.||+.+.+
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~-~g~l~pLl~~l~~~---~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLS-CGALDPLLRLLNKS---DKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHh-hcchHHHHHHhccc---cchHHHHHHHHHHHHHHcCCC
Confidence 57888999995 56889999999999999999999999999 99999999999875 123688899999999999875
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
-...+.....++|.|..+|.+.+.++...|+|+|.+|+... +.-..+++.|+++.||.+|...++.++..|++++.|++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 33333333348999999999999999999999999999655 44666778999999999999999999999999999999
Q ss_pred ccccchhH-HHhhCcHHHHHHHhcc-C--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHH
Q 012677 326 ILLENKRR-AVHAGAVRVILRKIME-N--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAA 400 (458)
Q Consensus 326 ~~~~~~~~-i~~~g~v~~Lv~ll~~-~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 400 (458)
...+.... +++.|+++.|..+|.. + .+++.|+++|.|++. +++..++++++|.+|.|+.+|+.++ .++|..|+|
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~~rKEAaw 386 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FDIRKEAAW 386 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hHHHHHHHH
Confidence 88876555 7889999999999984 4 478899999999977 8889999999999999999999775 999999999
Q ss_pred HHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 401 ILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 401 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
++.|++.....++-..+.+.|.+++|..++...+.++-..+...|.++-++.+..
T Consensus 387 aIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~ 441 (514)
T KOG0166|consen 387 AISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE 441 (514)
T ss_pred HHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence 9999998777666677778999999999998788889999999999998877653
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.92 E-value=3.8e-24 Score=194.99 Aligned_cols=276 Identities=17% Similarity=0.148 Sum_probs=232.7
Q ss_pred hhhhhhHHhhcCC--cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMSSS--LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+.++++|+.|.+. .-.+.+|.++|.+++.+...-...+++ +|++|.++.+|.++ +.++++.++++|+|++.++
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd-~~AVPlfiqlL~s~----~~~V~eQavWALGNiAGDS 188 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVD-AGAVPLFIQLLSST----EDDVREQAVWALGNIAGDS 188 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEe-CCchHHHHHHHcCc----hHHHHHHHHHHhccccCCc
Confidence 5678999999432 335679999999999987777777788 99999999999986 8899999999999999998
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCC--HHHHHHHHHHHHHhhccC---cchhHhhccCchHHHHHHhhcCChHHHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGT--IETRRNAAAALFSLSALD---SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASA 320 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~--~~~~~~a~~~L~~Ls~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 320 (458)
+..+-++-..|++..++.+|.++. ..+..++.|+|.||+... ++...| ..++|.|.+++.+.++++...|+||
T Consensus 189 ~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WA 266 (526)
T COG5064 189 EGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWA 266 (526)
T ss_pred hhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 865544444469999999988764 578899999999999754 223333 3469999999999999999999999
Q ss_pred HHHhcccccc-hhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHh
Q 012677 321 IFSLCILLEN-KRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKE 396 (458)
Q Consensus 321 L~~L~~~~~~-~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 396 (458)
|.+|+..+.. ...+++.|..+.|+++|.++ .++..+++.+.|+... +..-+.+++.|+++.+-.+|.+.. +.++.
T Consensus 267 iSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irK 345 (526)
T COG5064 267 ISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRK 345 (526)
T ss_pred HHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-hhhhh
Confidence 9999987754 45578899999999999987 6788899999999884 445566689999999999999766 79999
Q ss_pred HHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 397 NCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 397 ~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
.|+|++.|++.++.....+++ ++..+|+|+.++.+.+-.+++.|+|++.|...+.
T Consensus 346 EaCWTiSNITAGnteqiqavi-d~nliPpLi~lls~ae~k~kKEACWAisNatsgg 400 (526)
T COG5064 346 EACWTISNITAGNTEQIQAVI-DANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400 (526)
T ss_pred hhheeecccccCCHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999987665555 5889999999999999999999999999987554
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.90 E-value=1.3e-22 Score=185.00 Aligned_cols=282 Identities=13% Similarity=0.117 Sum_probs=238.6
Q ss_pred hhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 166 SRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 166 ~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.++++.+|++|+ ++.+++.+++++|.+++.+++.+|..+.+ .|++++|+.+|.+. ..+....+++.++|.||+.+
T Consensus 155 d~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~-~galeplL~ll~ss--~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 155 DAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQ-CGALEPLLGLLLSS--AIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred eCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHh-cCchHHHHHHHHhc--cchHHHHHHhHHHHHHhhCC
Confidence 3468899999996 45788999999999999999999999999 99999999999864 23568899999999999976
Q ss_pred ch--hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc-chhHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 245 DE--NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS-NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 245 ~~--~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
.. --...+.. .+|.|.+++.+.++++...|+|++.+|+.... ....+.+.|..+.||.+|.+++..++..|++.+
T Consensus 232 knP~P~w~~isq--alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v 309 (526)
T COG5064 232 KNPPPDWSNISQ--ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV 309 (526)
T ss_pred CCCCCchHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence 43 22233332 78999999999999999999999999987663 356677899999999999999999999999999
Q ss_pred HHhcccccchh-HHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhH
Q 012677 322 FSLCILLENKR-RAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 322 ~~L~~~~~~~~-~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 397 (458)
.|+....+... .++++|+++.+-.+|+++ .+++.++++|.|+.. +.+..+++++++.+|+|+++|...+ -.++..
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae-~k~kKE 388 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE-YKIKKE 388 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH-HHHHHH
Confidence 99998777544 478999999999999988 689999999999966 8889999999999999999999764 899999
Q ss_pred HHHHHHHHhccCc---hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 398 CAAILYNICFTDR---TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 398 a~~~L~~L~~~~~---~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
|+|++.|..++.- +.. +.+.+.|++.+|-.++...+.++-+-+..++.++-+....
T Consensus 389 ACWAisNatsgg~~~PD~i-ryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~ 447 (526)
T COG5064 389 ACWAISNATSGGLNRPDII-RYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ 447 (526)
T ss_pred HHHHHHhhhccccCCchHH-HHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhH
Confidence 9999999988653 333 4445689999999999877777777777777777655443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.85 E-value=7.5e-20 Score=189.00 Aligned_cols=217 Identities=19% Similarity=0.204 Sum_probs=192.9
Q ss_pred HHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCCh
Q 012677 232 EDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHP 311 (458)
Q Consensus 232 ~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 311 (458)
..+...|.|++.+..+...+...+ +++.|+++|++++.++...++++|.+||...+|+..+++.|+|++|++++.+++.
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~-iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~ 345 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKG-IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE 345 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH
Confidence 456677999999999999998874 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCC
Q 012677 312 LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTC 391 (458)
Q Consensus 312 ~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 391 (458)
+++..++++|+||+.+.+.|..+++.|++|.|+.+|.++..+..++.+|++|+.++++|..+...+++|.|++++-...+
T Consensus 346 ~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 346 DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999888888999999999999999999999999999998876656
Q ss_pred hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 392 ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 392 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+.++..+++++.||+...++. .++.+.|+++.|++......+.. ...+++|++.|...
T Consensus 426 ~~v~~eliaL~iNLa~~~rna--qlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~ 483 (708)
T PF05804_consen 426 EEVQLELIALLINLALNKRNA--QLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGP 483 (708)
T ss_pred ccccHHHHHHHHHHhcCHHHH--HHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCch
Confidence 778888999999999988653 44545778899988876654432 34689999988743
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=2.4e-18 Score=177.96 Aligned_cols=250 Identities=20% Similarity=0.231 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHH
Q 012677 185 KEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDS 264 (458)
Q Consensus 185 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~l 264 (458)
..++..|.+++. ++.+...+.. .|+|+.|+++|.+. +.++...++..|.+||...+|+..+.+.| +++.|+++
T Consensus 267 rv~~~lLlNLAe-d~~ve~kM~~-~~iV~~Lv~~Ldr~----n~ellil~v~fLkkLSi~~ENK~~m~~~g-iV~kL~kL 339 (708)
T PF05804_consen 267 RVAFYLLLNLAE-DPRVELKMVN-KGIVSLLVKCLDRE----NEELLILAVTFLKKLSIFKENKDEMAESG-IVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHhc-ChHHHHHHHh-cCCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHH
Confidence 456677889997 5788888998 99999999999875 78999999999999999999999999975 99999999
Q ss_pred HhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHH
Q 012677 265 VRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVIL 344 (458)
Q Consensus 265 L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv 344 (458)
+.+++.+++..+.++|.|||.+.+.+..+++.|+||.|+.+|.++ ..+..++.+|++||.++++|..+...+++|.|+
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLM 417 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence 999999999999999999999999999999999999999999864 466779999999999999999999999999999
Q ss_pred HHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhh
Q 012677 345 RKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEEN 421 (458)
Q Consensus 345 ~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g 421 (458)
++|.++ .+...+++++.||+.++.+.+.+.+.|+++.|++...... + ..-++++.||+.+++... ... .+
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~-D---~lLlKlIRNiS~h~~~~k-~~f--~~ 490 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR-D---PLLLKLIRNISQHDGPLK-ELF--VD 490 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc-c---HHHHHHHHHHHhcCchHH-HHH--HH
Confidence 988654 4666789999999999999999999999999998877544 2 235689999999985433 333 35
Q ss_pred hhHHHHHHhhhC-CHHHHHHHHHHHHHHHh
Q 012677 422 ANGTLSRLAENG-TSRAKRKANGILERLNK 450 (458)
Q Consensus 422 ~~~~L~~ll~~~-~~~~~~~A~~~L~~l~~ 450 (458)
+++.|+.++..+ ++...-.+.++|.||.-
T Consensus 491 ~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 491 FIGDLAKIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence 788888887665 66788999999999863
No 11
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.8e-16 Score=144.89 Aligned_cols=212 Identities=19% Similarity=0.283 Sum_probs=179.9
Q ss_pred cCchhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcc----------hhHhhccCchHHHHHHhhcC-C
Q 012677 243 IHDENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSN----------KLIIGKLGAMTPLIDLLEEG-H 310 (458)
Q Consensus 243 ~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~----------~~~i~~~g~i~~Lv~lL~~~-~ 310 (458)
.|+.||..+++.+ +.+.+...|.. +...+...+++++..|..+|+- ...|...|++..|+..+.-+ +
T Consensus 177 ~hE~nrQ~~m~~~-il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d 255 (461)
T KOG4199|consen 177 MHEVNRQLFMELK-ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID 255 (461)
T ss_pred HhHHHHHHHHHhh-HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC
Confidence 4667899999985 89988866654 4556888899999999988763 44566778899999999887 8
Q ss_pred hHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC------CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHH
Q 012677 311 PLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN------SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLR 384 (458)
Q Consensus 311 ~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~------~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ 384 (458)
|.....+..+|..|+..++.+..+++.|++..|++++.+. .+.+.++..|..|+.+++++..|++.|+.+.++.
T Consensus 256 p~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 256 PDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHH
Confidence 9999999999999999999999999999999999999874 2567799999999999999999999999999998
Q ss_pred HHh-hcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC--CHHHHHHHHHHHHHHHhhHhhhh
Q 012677 385 IIR-ESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG--TSRAKRKANGILERLNKAALIVH 456 (458)
Q Consensus 385 ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~~~ 456 (458)
++. +++++.+.+.++.++.-||-+.++..+.+++ .|+-...+.-++.. .-.++++|+++++|+..+.+...
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 775 5667999999999999999999988877776 67777777777655 34589999999999998776544
No 12
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.77 E-value=3e-19 Score=132.27 Aligned_cols=72 Identities=49% Similarity=0.988 Sum_probs=62.5
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHG 147 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~ 147 (458)
+|++|.||||+++|.|||+++|||+|++.||.+|+..++.+||.|+.+++...+.||..+++.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 478999999999999999999999999999999999867899999999999999999999999999999875
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.5e-16 Score=144.04 Aligned_cols=276 Identities=18% Similarity=0.216 Sum_probs=226.4
Q ss_pred hhhhhHHhh---cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 169 HLNSLLEKM---SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 169 ~l~~Lv~~l---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
++.-++..| .++.+.-...+..++.-+..++.+|+.+++ .++.+.+...|... +...+.+.+.++++-|..++
T Consensus 146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~-~~il~Li~~~l~~~---gk~~~VRel~~a~r~l~~dD 221 (461)
T KOG4199|consen 146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFME-LKILELILQVLNRE---GKTRTVRELYDAIRALLTDD 221 (461)
T ss_pred cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHH-hhHHHHHHHHHccc---CccHHHHHHHHHHHHhcCCC
Confidence 455566666 244556667788888888889999999999 99999998777654 24478888899999888777
Q ss_pred hh----------hhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC-Ch--
Q 012677 246 EN----------KRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG-HP-- 311 (458)
Q Consensus 246 ~~----------~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~-- 311 (458)
+. .+.|+..+ ++..|+..|+.+ ++++...++.+|..|+..++-++.|.+.|++..|++++.+. ..
T Consensus 222 DiRV~fg~ah~hAr~ia~e~-~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~ 300 (461)
T KOG4199|consen 222 DIRVVFGQAHGHARTIAKEG-ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGN 300 (461)
T ss_pred ceeeecchhhHHHHHHHHhh-hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhH
Confidence 63 45666664 788899999876 78999999999999999999999999999999999999874 33
Q ss_pred -HHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhcc----CCcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHH
Q 012677 312 -LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME----NSLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRI 385 (458)
Q Consensus 312 -~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~----~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~l 385 (458)
...+.++..|..|+..++++..||+.|+.+.++.++.. +.+...++.++..||. .|++...+++.|+-...|+.
T Consensus 301 r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqA 380 (461)
T KOG4199|consen 301 RTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQA 380 (461)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHH
Confidence 34578899999999999999999999999999999853 3578889999999988 89999999999999999999
Q ss_pred Hhhc-CChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 386 IRES-TCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 386 l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
|+.. .-..+|.+|++++.||+.++.+.. .++. ..++..|+.......+.....|..+|+.|.=+
T Consensus 381 mkahP~~a~vQrnac~~IRNiv~rs~~~~-~~~l-~~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 381 MKAHPVAAQVQRNACNMIRNIVVRSAENR-TILL-ANGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHhhhhcc-chHH-hccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 9843 236789999999999999887654 4444 45678888888877788888888888887533
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=1e-16 Score=168.46 Aligned_cols=267 Identities=19% Similarity=0.190 Sum_probs=225.5
Q ss_pred HHH-HHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCC-----C---CCCCChhHHHHHHHHHHhcccCch-hhhhhh
Q 012677 183 DQK-EAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSP-----G---RADTDPGLLEDLITTILNLSIHDE-NKRLVA 252 (458)
Q Consensus 183 ~~~-~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-----~---~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~ 252 (458)
.+. .|+..|-.++. ++++|..+.+ .|++..|-+||.- + .......++..|..+|.||..++. ||..+.
T Consensus 313 H~lcaA~~~lMK~SF-DEEhR~aM~E-LG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred hhhHHHHHHHHHhhc-cHHHHHHHHH-hhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 344 78888888888 4899999999 9999988887742 1 011134778899999999998876 788888
Q ss_pred cCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc-cCcc-hhHhhccCchHHHHHH-hhcCChHHHHHHHHHHHHhcccc-
Q 012677 253 ENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA-LDSN-KLIIGKLGAMTPLIDL-LEEGHPLAMKDVASAIFSLCILL- 328 (458)
Q Consensus 253 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~-~~~~-~~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~aL~~L~~~~- 328 (458)
...|++..+|..|.+...++....+.+|+||+= .|.| ++.+.+.|-+..|+.. |........+..+.|||||+.+.
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 888899999999999999999999999999994 4455 7777789999999985 45567788899999999999865
Q ss_pred cchhHHHhh-CcHHHHHHHhccC------CcHHHHHHHHHHhcC----CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhH
Q 012677 329 ENKRRAVHA-GAVRVILRKIMEN------SLVDELLAILAMLSS----HQDAIEEIGELGAIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 329 ~~~~~i~~~-g~v~~Lv~ll~~~------~~~~~a~~~L~~La~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 397 (458)
+|+..|... |++..||.+|.-. .+.+.+-.+|.|++. ++++|+.+.+++++..|+..|++ ++-.+..+
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS-~SLTiVSN 549 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKS-HSLTIVSN 549 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhh-cceEEeec
Confidence 799999885 9999999999733 578889999999876 68899999999999999999995 56899999
Q ss_pred HHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 398 CAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 398 a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
++++||||...++..+ +++.+.|+++.|.+|+++....+-+-++.+|+||--+.+
T Consensus 550 aCGTLWNLSAR~p~DQ-q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPEDQ-QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred chhhhhhhhcCCHHHH-HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 9999999999988665 778889999999999999888888889999999876653
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.69 E-value=5.7e-16 Score=156.92 Aligned_cols=279 Identities=21% Similarity=0.221 Sum_probs=221.2
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE- 246 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~- 246 (458)
.+++.|.+|. .++..|-.|...|..++..+...+..+.+ .|+|+.||.+|... +.+++..|+++|.||.....
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrq-lggI~kLv~Ll~~~----~~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQ-LGGIPKLVALLDHR----NDEVQRQACGALRNLVFGKST 308 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHH-hccHHHHHHHhcCC----cHHHHHHHHHHHHhhhcccCC
Confidence 5778888885 56788889999999999999999999999 99999999999985 88999999999999986543
Q ss_pred --hhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc-------C-------
Q 012677 247 --NKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE-------G------- 309 (458)
Q Consensus 247 --~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-------~------- 309 (458)
|+..|...+ +++.++++|+. +|.++++...++|.||+++|.-+..|+.. ++..|..-+-. +
T Consensus 309 ~~NKlai~~~~-Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~ 386 (717)
T KOG1048|consen 309 DSNKLAIKELN-GVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAE 386 (717)
T ss_pred cccchhhhhcC-ChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccc
Confidence 677777775 89999999987 79999999999999999998777777664 35666553321 1
Q ss_pred ChHHHHHHHHHHHHhcc-cccchhHHHhh-CcHHHHHHHhcc--------CCcHHHHHHHHHHhcCCHH------H----
Q 012677 310 HPLAMKDVASAIFSLCI-LLENKRRAVHA-GAVRVILRKIME--------NSLVDELLAILAMLSSHQD------A---- 369 (458)
Q Consensus 310 ~~~~~~~a~~aL~~L~~-~~~~~~~i~~~-g~v~~Lv~ll~~--------~~~~~~a~~~L~~La~~~~------~---- 369 (458)
+..+..++..+|.|++. .++.|.++-+. |.|..|+..+.. ....+.|+.+|.||+-.-+ .
T Consensus 387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~ 466 (717)
T KOG1048|consen 387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVL 466 (717)
T ss_pred cceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHh
Confidence 24577899999999998 66788888885 999999998872 1578999999999985211 0
Q ss_pred ----------------------HHH----------------------HHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHH
Q 012677 370 ----------------------IEE----------------------IGELGAIPCLLRIIRESTCERNKENCAAILYNI 405 (458)
Q Consensus 370 ----------------------~~~----------------------i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 405 (458)
++. +...-+|.....+|..+.++.+.+.++++|.||
T Consensus 467 ~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNl 546 (717)
T KOG1048|consen 467 ANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNL 546 (717)
T ss_pred hcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhh
Confidence 011 011113444456677666799999999999999
Q ss_pred hccCch---hHH-HHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 406 CFTDRT---RTR-EIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 406 ~~~~~~---~~~-~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+.+... ..+ .++....+.++|++|+..+++.+.+.++.+|+||+.....
T Consensus 547 tA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn 599 (717)
T KOG1048|consen 547 TAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN 599 (717)
T ss_pred hccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh
Confidence 987652 222 3335677899999999999999999999999999987654
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.64 E-value=2.4e-14 Score=132.03 Aligned_cols=194 Identities=16% Similarity=0.149 Sum_probs=170.5
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
++.++.|+.+|..+ .|+.+++.++.++.|.+..+.++..+.+.| +++.+..+|.++++.+++.|..+|.|++.+.+
T Consensus 11 ~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aaf~~nq~~Ir~~G-gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 11 AQELQKLLCLLEST---EDPFIQEKALIALGNSAAFPFNQDIIRDLG-GISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred HHHHHHHHHHHhcC---CChHHHHHHHHHHHhhccChhHHHHHHHcC-CHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 57789999999875 589999999999999999999999999985 99999999999999999999999999999999
Q ss_pred chhHhhccCchHHHHHHhhcC--ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhc
Q 012677 289 NKLIIGKLGAMTPLIDLLEEG--HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLS 364 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La 364 (458)
|+..|-. .|+.+++...+. +..++..++++|.||+..++.+..+. +.++.++++|..+ .++..++.+|.+|+
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 9888754 577777755443 77899999999999998887766664 4799999999987 57889999999999
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc
Q 012677 365 SHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 365 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
.+++..+.++.++++..++.++....+.++-..++....||..+-.
T Consensus 163 ~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 163 ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999976668889999999999976543
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.64 E-value=2e-16 Score=114.47 Aligned_cols=63 Identities=49% Similarity=0.888 Sum_probs=59.4
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQW 142 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~ 142 (458)
++.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|+.+++...+.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 4789999999999999999999999999999986 66899999999988999999999999987
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.56 E-value=1.4e-13 Score=139.71 Aligned_cols=281 Identities=20% Similarity=0.193 Sum_probs=216.6
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCch--hhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPL--FRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.|..||..|. ...+++..|..+|++|...+.. |+..|.+ .++|+.|+.+|+.. .|.++++....+|.||+.+
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~-~~Gv~~l~~~Lr~t---~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKE-LNGVPTLVRLLRHT---QDDEVRELITGILWNLSSN 350 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhh-cCChHHHHHHHHhh---cchHHHHHHHHHHhcccch
Confidence 56888888885 4588999999999999987666 9999999 99999999999975 5899999999999999999
Q ss_pred chhhhhhhcCCCCHHHHHHHHhcC--------------CHHHHHHHHHHHHHhhc-cCcchhHhhc-cCchHHHHHHhhc
Q 012677 245 DENKRLVAENPLAIPLLIDSVRTG--------------TIETRRNAAAALFSLSA-LDSNKLIIGK-LGAMTPLIDLLEE 308 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~~--------------~~~~~~~a~~~L~~Ls~-~~~~~~~i~~-~g~i~~Lv~lL~~ 308 (458)
+.-+..++.. .++.|..-+-.+ +.++-.++++.|+|++. .++.++.+.+ .|.|..|+..+++
T Consensus 351 D~lK~~ii~~--al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~ 428 (717)
T KOG1048|consen 351 DALKMLIITS--ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQT 428 (717)
T ss_pred hHHHHHHHHH--HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHH
Confidence 8777777775 566555433111 24566777888888876 4566777777 6777777755431
Q ss_pred --------------------------------------------------------------------------------
Q 012677 309 -------------------------------------------------------------------------------- 308 (458)
Q Consensus 309 -------------------------------------------------------------------------------- 308 (458)
T Consensus 429 ~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~p 508 (717)
T KOG1048|consen 429 AIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAP 508 (717)
T ss_pred HHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCC
Confidence
Q ss_pred ----------------------CChHHHHHHHHHHHHhccccc-----chhHH-HhhCcHHHHHHHhccC--CcHHHHHH
Q 012677 309 ----------------------GHPLAMKDVASAIFSLCILLE-----NKRRA-VHAGAVRVILRKIMEN--SLVDELLA 358 (458)
Q Consensus 309 ----------------------~~~~~~~~a~~aL~~L~~~~~-----~~~~i-~~~g~v~~Lv~ll~~~--~~~~~a~~ 358 (458)
.++.+.+.++.+|-||+...- .+..+ ....+.++|+++|..+ .+...++.
T Consensus 509 kG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~ 588 (717)
T KOG1048|consen 509 KGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAG 588 (717)
T ss_pred CCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHH
Confidence 123345566667777765442 23334 4567889999999866 68899999
Q ss_pred HHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCC-----hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh-
Q 012677 359 ILAMLSSHQDAIEEIGELGAIPCLLRIIRESTC-----ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN- 432 (458)
Q Consensus 359 ~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~- 432 (458)
+|.||+.+..+|..|. .++++.||+.|..+.. +++...++.+|.++...+....+.+.+ .++++.|+.+..+
T Consensus 589 ~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~-~~g~~kL~~I~~s~ 666 (717)
T KOG1048|consen 589 ALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLE-IKGIPKLRLISKSQ 666 (717)
T ss_pred HHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHh-ccChHHHHHHhccc
Confidence 9999999999999998 6789999999986543 788899999999999877766666664 7889999998876
Q ss_pred CCHHHHHHHHHHHHHHHhhHhhhh
Q 012677 433 GTSRAKRKANGILERLNKAALIVH 456 (458)
Q Consensus 433 ~~~~~~~~A~~~L~~l~~~~~~~~ 456 (458)
.+++.-+.|..+|..|=.+.+.++
T Consensus 667 ~S~k~~kaAs~vL~~lW~y~eLh~ 690 (717)
T KOG1048|consen 667 HSPKEFKAASSVLDVLWQYKELHF 690 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhh
Confidence 477899999999888766555433
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.56 E-value=2.6e-13 Score=125.24 Aligned_cols=187 Identities=18% Similarity=0.240 Sum_probs=163.4
Q ss_pred hhhhhhHHhhc--CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMS--SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+.++.|+..|. .++..+..++..+.+.+. .+.++..|.+ .|+++.+..+|..+ ++.+++.|+.+|.|++.+.
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~-~Ggi~lI~~lL~~p----~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRD-LGGISLIGSLLNDP----NPSVREKALNALNNLSVND 85 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHH-cCCHHHHHHHcCCC----ChHHHHHHHHHHHhcCCCh
Confidence 46899999995 568899999999999876 6899999999 99999999999986 8899999999999999999
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTG--TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
+|+..+-. .++.+.+.+.+. +.+++..+.++|.||+..+++...+.. .|+.++.+|..|+..++..++.+|.|
T Consensus 86 en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 86 ENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99887743 567677655544 788999999999999998888777754 69999999999999999999999999
Q ss_pred hcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcC
Q 012677 324 LCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSS 365 (458)
Q Consensus 324 L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~ 365 (458)
|+..+.+...++.++++..++.++... ++...++.++.||..
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865 566778888888865
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.44 E-value=1.3e-12 Score=138.36 Aligned_cols=226 Identities=19% Similarity=0.189 Sum_probs=189.2
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-h-hhhhhcCCCCH
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-N-KRLVAENPLAI 258 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~-~~~i~~~~~~i 258 (458)
...|+.|..+|.+|+.++..|+..+....|.++.||..|.+. ..++....+.+|+||+...+ | ++.+-+. |-+
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~----peeL~QV~AsvLRNLSWRAD~nmKkvLrE~-GsV 439 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA----PEELLQVYASVLRNLSWRADSNMKKVLRET-GSV 439 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC----hHHHHHHHHHHHHhccccccccHHHHHHhh-hhH
Confidence 346889999999999999999888876689999999999873 55888888899999998866 4 5555555 477
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHHHHhhccC-cchhHhhc-cCchHHHHHHhhcC----ChHHHHHHHHHHHHhcc----c
Q 012677 259 PLLID-SVRTGTIETRRNAAAALFSLSALD-SNKLIIGK-LGAMTPLIDLLEEG----HPLAMKDVASAIFSLCI----L 327 (458)
Q Consensus 259 ~~Lv~-lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~----~ 327 (458)
..|+. .+........+....+|+||+.+. +||..|.. .|++..||.+|.-. ...+.+.|-+.|.|.+. .
T Consensus 440 taLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~ 519 (2195)
T KOG2122|consen 440 TALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATC 519 (2195)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhcc
Confidence 77776 456667778889999999999765 88988888 99999999999643 55778889999988765 4
Q ss_pred ccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHH
Q 012677 328 LENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYN 404 (458)
Q Consensus 328 ~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 404 (458)
++.|+.+.+.+.+..|++.|++. .++.+++.+||||+. +++.++.+++.|+|+.|-.++.+.+ .-+.+-++.+|.|
T Consensus 520 E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKh-kMIa~GSaaALrN 598 (2195)
T KOG2122|consen 520 EDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKH-KMIAMGSAAALRN 598 (2195)
T ss_pred chHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhh-hhhhhhHHHHHHH
Confidence 45677778889999999999988 578899999999976 9999999999999999999999765 7888889999999
Q ss_pred HhccCchh
Q 012677 405 ICFTDRTR 412 (458)
Q Consensus 405 L~~~~~~~ 412 (458)
|..+.+.+
T Consensus 599 Lln~RPAk 606 (2195)
T KOG2122|consen 599 LLNFRPAK 606 (2195)
T ss_pred HhcCCchh
Confidence 99887644
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.42 E-value=8.1e-14 Score=90.58 Aligned_cols=39 Identities=38% Similarity=0.877 Sum_probs=31.4
Q ss_pred cccccccccCCccCCCcccccHHHHHHHHhcCC---CCCCCC
Q 012677 82 CPISGEIMTDPVVLANGQTFDRPCIQRWLDEGN---RTCPQT 120 (458)
Q Consensus 82 C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~---~~CP~c 120 (458)
||||+++|++||+++|||+||+.||.+|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998543 369987
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.40 E-value=1.1e-10 Score=119.62 Aligned_cols=272 Identities=13% Similarity=0.146 Sum_probs=210.1
Q ss_pred hHHhhcCC-cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhh
Q 012677 173 LLEKMSSS-LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLV 251 (458)
Q Consensus 173 Lv~~l~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 251 (458)
+...|..+ .+....+...|..+.... ... .+ . .+..+.|...|.+. ++.++..+++.|.++..+++....+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~-~l-~-~~~~~~L~~gL~h~----~~~Vr~l~l~~l~~~~~~~~~~~~~ 114 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPD-SL-L-PQYQPFLQRGLTHP----SPKVRRLALKQLGRIARHSEGAAQL 114 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHH-HH-H-HHHHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 44455433 344444555666555432 222 22 2 46778888888875 8899999999999999888876666
Q ss_pred hcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccc-
Q 012677 252 AENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLEN- 330 (458)
Q Consensus 252 ~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~- 330 (458)
+...++++.++.+|..++.++...|+.+|.+|+.+..+...+...+.+..|..++...+..+|..+..++.+++...+.
T Consensus 115 ~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 115 LVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred hcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 6555799999999999999999999999999999888888888888899999999888888999999999999987654
Q ss_pred hhHHHhhCcHHHHHHHhccCC--cHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChh-----HHhHHHHHHH
Q 012677 331 KRRAVHAGAVRVILRKIMENS--LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCER-----NKENCAAILY 403 (458)
Q Consensus 331 ~~~i~~~g~v~~Lv~ll~~~~--~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-----~~~~a~~~L~ 403 (458)
...+.+.|.++.++..|.+.+ ++..++.+|..|+..+.+.+.+.+.|+++.|+.++.+...+. .--..+....
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 555677899999999998874 688899999999999999999999999999999998643222 2223346667
Q ss_pred HHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 404 NICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 404 ~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+++...+..... .-..++..|..++.+.++..+..|..++..++...++
T Consensus 275 ~la~~~~~~v~~--~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 275 NLARVSPQEVLE--LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred HHHhcChHHHHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 777754433211 1245666677777788889999999999999876655
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.9e-11 Score=117.07 Aligned_cols=219 Identities=17% Similarity=0.191 Sum_probs=178.9
Q ss_pred hHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc
Q 012677 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE 308 (458)
Q Consensus 229 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 308 (458)
.....|+..|.|++.+-..-..+.... ++..||+.|+..+.++.......|..||..++|+..+++.|.|+.|++++..
T Consensus 278 qLLrva~ylLlNlAed~~~ElKMrrkn-iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELKMRRKN-IVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHh-HHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 455678888999998876666666664 8999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhh
Q 012677 309 GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRE 388 (458)
Q Consensus 309 ~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~ 388 (458)
.+++.+...+..|+||+.+..++.+++..|.+|.|+.++.+..-..-|+.+|+.|+.+++.+..+.-..+|+.+.+.+-.
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~ 436 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLS 436 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998877777999999999999999999999999999998876
Q ss_pred cCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 389 STCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 389 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
..+.++...-+..-.|||....+. .++-++.++..|.+......+..- ..++++++.|..
T Consensus 437 ~~~~~vdl~lia~ciNl~lnkRNa--QlvceGqgL~~LM~ra~k~~D~lL---mK~vRniSqHeg 496 (791)
T KOG1222|consen 437 GTGSEVDLALIALCINLCLNKRNA--QLVCEGQGLDLLMERAIKSRDLLL---MKVVRNISQHEG 496 (791)
T ss_pred cCCceecHHHHHHHHHHHhccccc--eEEecCcchHHHHHHHhcccchHH---HHHHHHhhhccc
Confidence 555666666666668888877653 445445566666654332222221 234555555443
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.35 E-value=2.8e-10 Score=116.61 Aligned_cols=272 Identities=14% Similarity=0.124 Sum_probs=207.1
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
..+.|...|. +++.+|.-++..|.++..++......+.+ .+.++.++.+|... +..+...|..+|.+++.++..
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~-~~l~~~i~~~L~~~----d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD-NELLPLIIQCLRDP----DLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC-ccHHHHHHHHHcCC----cHHHHHHHHHHHHHHhCCchh
Confidence 3445555564 56788999999999999877776777777 89999999999875 899999999999999999888
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
...+...+ .++.|..++...+..+|..+..++.+++... +....+.+.|.++.++..|+++|.-++.+++..|..|+.
T Consensus 153 ~~~l~~~~-~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 153 LEQLFDSN-LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHHhCcc-hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 77787765 7898999999888899999999999998655 456777779999999999999899999999999999999
Q ss_pred cccchhHHHhhCcHHHHHHHhccC---C-----cHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHhH
Q 012677 327 LLENKRRAVHAGAVRVILRKIMEN---S-----LVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 327 ~~~~~~~i~~~g~v~~Lv~ll~~~---~-----~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 397 (458)
.+.+..-+.+.|+++.|+.++.+. + ..-..+....+++.. +..-.... ...+..|.+++. +.+...+..
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~-s~d~~~~~~ 309 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLE-SQDPTIREV 309 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhC-CCChhHHHH
Confidence 888988899999999999999754 2 223344566667663 32111100 112333334444 345889999
Q ss_pred HHHHHHHHhccCchhHHHH-HHhhhhhHHHHHH----hhhCCHHHHHHHHHHHHHHH
Q 012677 398 CAAILYNICFTDRTRTREI-MEEENANGTLSRL----AENGTSRAKRKANGILERLN 449 (458)
Q Consensus 398 a~~~L~~L~~~~~~~~~~~-~~~~g~~~~L~~l----l~~~~~~~~~~A~~~L~~l~ 449 (458)
|+.+|..|++..+++. .+ ....+.+..+++. ..+++..+|.++..+|.++-
T Consensus 310 A~dtlg~igst~~G~~-~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 310 AFDTLGQIGSTVEGKQ-LLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHHHHHHhCCHHHHH-HHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 9999999998776652 33 2323344444443 34567789999999999884
No 25
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.35 E-value=7.1e-13 Score=113.99 Aligned_cols=61 Identities=30% Similarity=0.556 Sum_probs=51.7
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHhc---------------CCCCCCCCCccCCCCCCcccHH
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE---------------GNRTCPQTRQVLSHTVLIPNHL 134 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~---------------~~~~CP~c~~~l~~~~~~~n~~ 134 (458)
.+..+++.||||++.++||++++|||.||+.||.+|+.. +...||+|+..++...+.|.+.
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 345578999999999999999999999999999999852 2358999999998887777653
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.29 E-value=5e-11 Score=97.90 Aligned_cols=115 Identities=22% Similarity=0.291 Sum_probs=103.3
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc-ccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCH-
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL-LENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQ- 367 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~- 367 (458)
.+.+.|+++.|+.+|.++++.++..++.+|.+++.. ++.+..+++.|+++.|+++|.++ .++..++++|++|+.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356789999999999999999999999999999998 56788888899999999999976 68999999999999954
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 368 DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 368 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
..+..+.+.|+++.|++++.+. +..+++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 6777788999999999999965 59999999999999874
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=4.3e-12 Score=122.64 Aligned_cols=71 Identities=30% Similarity=0.508 Sum_probs=64.1
Q ss_pred CCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 012677 73 LLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCK 144 (458)
Q Consensus 73 ~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 144 (458)
...+...+.|+||.+++.+|++++|||+||..||..|+.. ...||.|+..+....+.+|..+..+|+.|..
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 3457788999999999999999999999999999999985 4579999999988889999999999998864
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.25 E-value=1.5e-10 Score=95.04 Aligned_cols=116 Identities=20% Similarity=0.307 Sum_probs=103.4
Q ss_pred HHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 333 RAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 333 ~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
.+++.|+++.|+++|.++ .++..++.+|.+++.. ++.+..+.+.|+++.|+++|.++ ++.++..|+++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence 467889999999999987 6789999999999995 89999999999999999999975 5999999999999999977
Q ss_pred chhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 410 RTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 410 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
+.. ...+...|+++.|++++.+++..+++.|.++|.+|+.
T Consensus 81 ~~~-~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDN-KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHH-HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 644 3555568999999999999999999999999999873
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.21 E-value=2.8e-09 Score=101.33 Aligned_cols=280 Identities=13% Similarity=0.046 Sum_probs=194.5
Q ss_pred hhhhhHHhhcC-CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCC---hhHHHHHHHHHHhcccC
Q 012677 169 HLNSLLEKMSS-SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTD---PGLLEDLITTILNLSIH 244 (458)
Q Consensus 169 ~l~~Lv~~l~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~---~~~~~~a~~~L~~ls~~ 244 (458)
.+..|.+-.++ +.++-.+...+|.+.+.++.++|..+.+ .||-..++++|+...+.++ .+....+.+.|.|...+
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~-lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFN-LGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHh-cCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 56666666654 3666677888999999999999999999 9998999999987544433 24555677788887766
Q ss_pred ch-hhhhhhcCCCCHHHHHHHHhcC----------------------------------------------CHHHHHHHH
Q 012677 245 DE-NKRLVAENPLAIPLLIDSVRTG----------------------------------------------TIETRRNAA 277 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL~~~----------------------------------------------~~~~~~~a~ 277 (458)
.+ .+.++++.| +++.|+..+.-+ +++.++...
T Consensus 167 ~~~l~aq~~~~g-Vl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 167 SRELRAQVADAG-VLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred cHHHHHHHHhcc-cHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 54 577777764 887555443211 123344444
Q ss_pred HHHHHhhccCcchhHhhccC--------------------------------------------------chHHHHHHhh
Q 012677 278 AALFSLSALDSNKLIIGKLG--------------------------------------------------AMTPLIDLLE 307 (458)
Q Consensus 278 ~~L~~Ls~~~~~~~~i~~~g--------------------------------------------------~i~~Lv~lL~ 307 (458)
.+|...+.++.-+-.+.+.| .++.++.++.
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 44444444443222222333 4445556666
Q ss_pred cCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhcc-----C--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHH
Q 012677 308 EGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME-----N--SLVDELLAILAMLSSHQDAIEEIGELGAIP 380 (458)
Q Consensus 308 ~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~-----~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~ 380 (458)
+.+...+..+.-+|.|++..++++..+++.|.+..|+.+|.. + ..+..++.+|+||+-.-.+|..++.+|.+.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvte 405 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTE 405 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHH
Confidence 667777788889999999999999999999999999999963 2 457779999999999999999999999999
Q ss_pred HHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHH-HHHHHHHHHHHHHhh
Q 012677 381 CLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSR-AKRKANGILERLNKA 451 (458)
Q Consensus 381 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~-~~~~A~~~L~~l~~~ 451 (458)
.++..++.. ++.++-.-++.|..+-...+-..-++......+..|+.+..+.+.. +--..-++|..+-+|
T Consensus 406 aIL~~lk~~-~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 406 AILLQLKLA-SPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred HHHHHHHhc-CCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHh
Confidence 999999954 5888888899999887766533334444444555566666655433 333333444444334
No 30
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.20 E-value=8.1e-12 Score=80.38 Aligned_cols=38 Identities=39% Similarity=0.920 Sum_probs=33.3
Q ss_pred cccccccccCC-ccCCCcccccHHHHHHHHhcCCCCCCCC
Q 012677 82 CPISGEIMTDP-VVLANGQTFDRPCIQRWLDEGNRTCPQT 120 (458)
Q Consensus 82 C~ic~~~~~~p-~~l~cgh~fc~~ci~~~~~~~~~~CP~c 120 (458)
||||++.+.+| +.++|||+||+.|+.+|++. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999997 6789987
No 31
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8.8e-12 Score=109.04 Aligned_cols=59 Identities=29% Similarity=0.563 Sum_probs=51.3
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcC--CCCCCCCCccCCCCCCcccHHH
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEG--NRTCPQTRQVLSHTVLIPNHLV 135 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~--~~~CP~c~~~l~~~~~~~n~~l 135 (458)
-..|.|.||++..+|||++.|||.||+.||.+|+... ...||+|+..++...+.|-+..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 4578999999999999999999999999999999743 3579999999998888776543
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.13 E-value=1.9e-11 Score=111.56 Aligned_cols=68 Identities=24% Similarity=0.416 Sum_probs=62.3
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCK 144 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 144 (458)
+-+-+.|-||.++|.-|+++||||+||..||..++.. ++.||.|+.++..+.++.|..+..+|+.|..
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 4466889999999999999999999999999999985 6689999999999999999999999998864
No 33
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.13 E-value=1.9e-09 Score=104.07 Aligned_cols=227 Identities=18% Similarity=0.121 Sum_probs=161.6
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcC------CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAEN------PLAIPLLIDSVRTGTIETRRNAAAALFSLSA 285 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~------~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 285 (458)
+..++.+|+.. ..+.++....+..+..+...++.+..+... +.....+++++.+++.-++..|+..|..|..
T Consensus 57 ~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 57 ASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -----HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44555555432 136788888888888877666544333322 1245668889999999999999999999987
Q ss_pred cCcchhHhhccCchHHHHHHhhc----CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHh------ccC---Cc
Q 012677 286 LDSNKLIIGKLGAMTPLIDLLEE----GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKI------MEN---SL 352 (458)
Q Consensus 286 ~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll------~~~---~~ 352 (458)
..+....-...+.++.++.++.+ ++.+.+..|+.+|.+|...++.|..+.+.|+++.|+.++ .+. .+
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 76554444336678888888875 345567889999999999999999999999999999999 222 57
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh
Q 012677 353 VDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN 432 (458)
Q Consensus 353 ~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~ 432 (458)
+..++-+++.|+.+++....+...+.|+.|+++++...-+++..-++++|.||....+......+-..|+.+.+..|...
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 88899999999999999999999999999999999877799999999999999998874334555557777777776654
Q ss_pred --CCHHHHHH
Q 012677 433 --GTSRAKRK 440 (458)
Q Consensus 433 --~~~~~~~~ 440 (458)
+++++.+-
T Consensus 295 k~~Dedl~ed 304 (312)
T PF03224_consen 295 KWSDEDLTED 304 (312)
T ss_dssp --SSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 35555543
No 34
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.4e-08 Score=101.43 Aligned_cols=277 Identities=17% Similarity=0.218 Sum_probs=211.6
Q ss_pred hhhhhhHHhhcCC--cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMSSS--LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
++|+.|+....++ .+.|+.|+..|..+++ .+|..++. -|.++|+..|... ..|+++...++.++.++..++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga--~Gmk~li~vL~~D--~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA--QGMKPLIQVLQRD--YMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH--cccHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcC
Confidence 5789999998433 7899999999999997 47888876 6799999999863 348899999999999997766
Q ss_pred h------h-----------hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC--cchhHhhc-cCchHHHHHH
Q 012677 246 E------N-----------KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD--SNKLIIGK-LGAMTPLIDL 305 (458)
Q Consensus 246 ~------~-----------~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~-~g~i~~Lv~l 305 (458)
+ + ...++...+.|..|+..+..-+..+|..++..|.+|-..- +.+..+.. +.+|..|+.+
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 3 1 3456666778999999999999999999999999987654 34555554 8899999999
Q ss_pred hhcCChHHHHHHHHHHHHhcccccchhHHHh-hCcHHHHHHHhccC------CcHHHHHHHHHHhcC-CHHHHHHHHhcC
Q 012677 306 LEEGHPLAMKDVASAIFSLCILLENKRRAVH-AGAVRVILRKIMEN------SLVDELLAILAMLSS-HQDAIEEIGELG 377 (458)
Q Consensus 306 L~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~-~g~v~~Lv~ll~~~------~~~~~a~~~L~~La~-~~~~~~~i~~~g 377 (458)
|.+....+|-.++..|..|..+....+++|. .+++..|..++... -+.+.|+..|.||-. +..|+..+.+.+
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~ 254 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS 254 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence 9998889999999999999999999888777 69999999999743 368899999999999 778999999999
Q ss_pred CHHHHHHHHhhcC--Ch-------h---HHhHHHHHHHHHhccCc-----hhHHHHHHhhhhhHHHHHHhhhC--CHHHH
Q 012677 378 AIPCLLRIIREST--CE-------R---NKENCAAILYNICFTDR-----TRTREIMEEENANGTLSRLAENG--TSRAK 438 (458)
Q Consensus 378 ~i~~Lv~ll~~~~--~~-------~---~~~~a~~~L~~L~~~~~-----~~~~~~~~~~g~~~~L~~ll~~~--~~~~~ 438 (458)
-||.|.++|.... +. . .--.++.++..|..-.. ....+++...+.+..|..++.+. ...++
T Consensus 255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl 334 (970)
T KOG0946|consen 255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL 334 (970)
T ss_pred cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence 9999999886311 11 1 11234455555554221 11224555677888887776543 33466
Q ss_pred HHHHHHHHHHHhh
Q 012677 439 RKANGILERLNKA 451 (458)
Q Consensus 439 ~~A~~~L~~l~~~ 451 (458)
..+.-.+..+-+-
T Consensus 335 tesiitvAevVRg 347 (970)
T KOG0946|consen 335 TESIITVAEVVRG 347 (970)
T ss_pred HHHHHHHHHHHHh
Confidence 6665555555443
No 35
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.1e-08 Score=98.58 Aligned_cols=266 Identities=17% Similarity=0.206 Sum_probs=203.1
Q ss_pred hhhhhHHhhcCCc----HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 169 HLNSLLEKMSSSL----SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 169 ~l~~Lv~~l~~~~----~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.+.++-+.+..-. ..-+.|+-.|.+++.+ -..-..+.. ...+..||..|... +.+........|..|+..
T Consensus 261 e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed-~~~ElKMrr-kniV~mLVKaLdr~----n~~Ll~lv~~FLkKLSIf 334 (791)
T KOG1222|consen 261 EIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED-ISVELKMRR-KNIVAMLVKALDRS----NSSLLTLVIKFLKKLSIF 334 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHH-HhHHHHHHHHHccc----chHHHHHHHHHHHHhhhh
Confidence 3455555554221 1123455567788864 445556666 78999999999875 667777888889999999
Q ss_pred chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 245 DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
.+|+..+...+ +++.|++++....++++......|.|||.+..++..++..|.+|.|+.+|.++.. ..-|+..|+.+
T Consensus 335 ~eNK~~M~~~~-iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~ 411 (791)
T KOG1222|consen 335 DENKIVMEQNG-IVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHL 411 (791)
T ss_pred ccchHHHHhcc-HHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhh
Confidence 99999999985 9999999999999999999999999999999999999999999999999987532 24588999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
+.++..+..+.....|+.++..+-++ .+....++.-.|||.+..+.+.+++..++..|++.--... +. .-++.
T Consensus 412 S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~-D~---lLmK~ 487 (791)
T KOG1222|consen 412 SCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSR-DL---LLMKV 487 (791)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhccc-ch---HHHHH
Confidence 99999999999999999999988765 3444455555799999999999988778888887655443 22 35678
Q ss_pred HHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-CHHHHHHHHHHHHHHHh
Q 012677 402 LYNICFTDRTRTREIMEEENANGTLSRLAENG-TSRAKRKANGILERLNK 450 (458)
Q Consensus 402 L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~A~~~L~~l~~ 450 (458)
+.||+.+....+..++. .++-|...+... +..---.+.++|.+|..
T Consensus 488 vRniSqHeg~tqn~Fid---yvgdLa~i~~nd~~E~F~~EClGtlanL~v 534 (791)
T KOG1222|consen 488 VRNISQHEGATQNMFID---YVGDLAGIAKNDNSESFGLECLGTLANLKV 534 (791)
T ss_pred HHHhhhccchHHHHHHH---HHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence 89999988755555553 556666666543 44556666777776653
No 36
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=9.7e-11 Score=105.61 Aligned_cols=53 Identities=23% Similarity=0.485 Sum_probs=46.8
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
.+..+.|.+|++.+.+|..+||||.||.+||..|... ...||.||..+++..+
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 4556899999999999999999999999999999986 4469999999887654
No 37
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.06 E-value=4.8e-11 Score=82.36 Aligned_cols=59 Identities=25% Similarity=0.441 Sum_probs=33.8
Q ss_pred CccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHH
Q 012677 78 YEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMI 139 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i 139 (458)
.-+.|++|.++|++||.+ .|.|.||+.||.+.+.. .||+|..+....+++.|..+..+|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 456799999999999976 79999999999887653 499999999999999999988775
No 38
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.04 E-value=1.3e-10 Score=75.78 Aligned_cols=39 Identities=44% Similarity=1.030 Sum_probs=36.0
Q ss_pred cccccccccCCc-cCCCcccccHHHHHHHHh-cCCCCCCCC
Q 012677 82 CPISGEIMTDPV-VLANGQTFDRPCIQRWLD-EGNRTCPQT 120 (458)
Q Consensus 82 C~ic~~~~~~p~-~l~cgh~fc~~ci~~~~~-~~~~~CP~c 120 (458)
|+||.+.+.+|+ +++|||+||..|+.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 789999999999999998 556789987
No 39
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.02 E-value=1.6e-10 Score=78.91 Aligned_cols=46 Identities=35% Similarity=0.616 Sum_probs=40.4
Q ss_pred ccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
++.|+||++...+++.+||||. ||..|+.+|+. ....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 5679999999999999999999 99999999998 4668999999875
No 40
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.02 E-value=9.5e-11 Score=77.66 Aligned_cols=40 Identities=43% Similarity=0.905 Sum_probs=33.8
Q ss_pred cccccccccc---CCccCCCcccccHHHHHHHHhcCCCCCCCCC
Q 012677 81 RCPISGEIMT---DPVVLANGQTFDRPCIQRWLDEGNRTCPQTR 121 (458)
Q Consensus 81 ~C~ic~~~~~---~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~ 121 (458)
.|+||++.+. .++.++|||.||..||.+|++. +.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999884 4566799999999999999986 56899996
No 41
>PRK09687 putative lyase; Provisional
Probab=99.01 E-value=1.9e-08 Score=94.98 Aligned_cols=220 Identities=14% Similarity=0.026 Sum_probs=148.3
Q ss_pred hhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhc-cCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 169 HLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSP-LSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 169 ~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.+..+.+.+ ++++.+|..|+..|..+-.... . . ..+++.|..+ +.+ .+..++..|+.+|+++.....
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~-~~a~~~L~~l~~~D----~d~~VR~~A~~aLG~~~~~~~ 123 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----Q-DNVFNILNNLALED----KSACVRASAINATGHRCKKNP 123 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----h-HHHHHHHHHHHhcC----CCHHHHHHHHHHHhccccccc
Confidence 344455544 3556777777777776643211 0 1 2356666666 333 367788888888888754322
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
.. .. .+++.+...+.+++..+|..++.+|..+ ....+|+.|+.+|++.++.++..|+.+|..+..
T Consensus 124 ~~----~~-~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 124 LY----SP-KIVEQSQITAFDKSTNVRFAVAFALSVI----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKY 188 (280)
T ss_pred cc----ch-HHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC
Confidence 11 01 1345566667777888888888888543 334578999999998888999999999998822
Q ss_pred cccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHH
Q 012677 327 LLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYN 404 (458)
Q Consensus 327 ~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 404 (458)
.. ..+++.|+.+|.+. .++..|+.+|..+-. .-+++.|++.|.++ .++..++.+|.+
T Consensus 189 ~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~---~~~~~a~~ALg~ 247 (280)
T PRK09687 189 DN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKG---TVGDLIIEAAGE 247 (280)
T ss_pred CC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCC---chHHHHHHHHHh
Confidence 11 24678888899876 678888888876522 24689999999853 366677777777
Q ss_pred HhccCchhHHHHHHhhhhhHHHHHHhh-hCCHHHHHHHHHHHHH
Q 012677 405 ICFTDRTRTREIMEEENANGTLSRLAE-NGTSRAKRKANGILER 447 (458)
Q Consensus 405 L~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~ 447 (458)
+... -+++.|..++. ..++.++.+|.++|..
T Consensus 248 ig~~------------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 248 LGDK------------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred cCCH------------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 6551 26788999886 6788999999988763
No 42
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.00 E-value=1.5e-10 Score=75.05 Aligned_cols=36 Identities=36% Similarity=0.859 Sum_probs=23.1
Q ss_pred cccccccccC----CccCCCcccccHHHHHHHHhcC---CCCCC
Q 012677 82 CPISGEIMTD----PVVLANGQTFDRPCIQRWLDEG---NRTCP 118 (458)
Q Consensus 82 C~ic~~~~~~----p~~l~cgh~fc~~ci~~~~~~~---~~~CP 118 (458)
||||.+ |.+ |++|+|||+||+.|+.++++.+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999854 45777
No 43
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.99 E-value=3.8e-08 Score=93.75 Aligned_cols=262 Identities=13% Similarity=0.083 Sum_probs=192.9
Q ss_pred HHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCC----CChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHH
Q 012677 188 AKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRAD----TDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLID 263 (458)
Q Consensus 188 ~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~ 263 (458)
...+... .+++..+..+++ .|.++.++++++..... +....-..++....-+..+++.-..+...+.++..++.
T Consensus 245 feila~~-aend~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 245 FEILAKA-AENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHH-hcCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 3334444 457888888898 89999999998762111 11222334444444556666655555554447888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc-----CChHHHHHHHHHHHHhcccccchhHHHhhC
Q 012677 264 SVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE-----GHPLAMKDVASAIFSLCILLENKRRAVHAG 338 (458)
Q Consensus 264 lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g 338 (458)
.+.+.+......++-++.|++..|+++..+++.|.+..|+.+|.. |+.+.+..++.||+||..-..|+..++.+|
T Consensus 323 w~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aG 402 (604)
T KOG4500|consen 323 WFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAG 402 (604)
T ss_pred HhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccc
Confidence 999999999999999999999999999999999999999998854 577899999999999999999999999999
Q ss_pred cHHHHHHHhccC--CcHHHHHHHHHHhcCCHH-HHHHHHhc-CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch-hH
Q 012677 339 AVRVILRKIMEN--SLVDELLAILAMLSSHQD-AIEEIGEL-GAIPCLLRIIRESTCERNKENCAAILYNICFTDRT-RT 413 (458)
Q Consensus 339 ~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~-~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~~ 413 (458)
+.+.++..+... +++-+-+..|..+-...+ ...++.+. ..+..|++.-++++-..+-..+.+.|.-+-.++.- ..
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv 482 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDV 482 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhh
Confidence 999999998744 788888888877755333 44444443 25777777777554345777888888888887531 11
Q ss_pred HHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 414 REIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 414 ~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
...+-..|++..++.+........+..|..+|-.+...
T Consensus 483 ~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 483 ILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred HhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 22233477888888888777777777777777665543
No 44
>PRK09687 putative lyase; Provisional
Probab=98.98 E-value=2.2e-08 Score=94.60 Aligned_cols=222 Identities=10% Similarity=0.004 Sum_probs=162.3
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..+..|+..|. .+..+|..|+..|..+-. ..+++.+..++.+. ++.++..|+.+|+.+-....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~----d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSK----NPIERDIGADILSQLGMAKR 86 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCC----CHHHHHHHHHHHHhcCCCcc
Confidence 35667888885 567888889888865432 45677788887764 89999999999999864322
Q ss_pred hhhhhhcCCCCHHHHHHH-HhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDS-VRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
. .. ..++.|..+ ++.++..+|..|+.+|.++....... ...+++.+...+.++++.++..++.+|..+.
T Consensus 87 ~-----~~-~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 87 C-----QD-NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN 156 (280)
T ss_pred c-----hH-HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC
Confidence 1 11 267778776 56778999999999999985433211 2235666777888889999999999997652
Q ss_pred ccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 326 ILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 326 ~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
...+++.|+.+|.++ .++..|+.+|..+.. ++ .+++.|+.+|.+. +..++..|+.+|
T Consensus 157 ----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aL 216 (280)
T PRK09687 157 ----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGL 216 (280)
T ss_pred ----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 234889999999977 688889999998833 22 3567789999865 599999999999
Q ss_pred HHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 403 YNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 403 ~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
..+-. .-+++.|++.+.+++ ++..|+.+|..+.
T Consensus 217 g~~~~------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 217 ALRKD------------KRVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred HccCC------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 87432 125678888877765 4455666665554
No 45
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.98 E-value=2.5e-10 Score=102.05 Aligned_cols=68 Identities=26% Similarity=0.381 Sum_probs=60.0
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCK 144 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 144 (458)
+..-+.|-||.++++-|+.++|||+||..||.+++.. +..||+|+.+.....++.+..++.+++.|..
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 3345789999999999999999999999999999986 5579999999988888888888888888754
No 46
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.97 E-value=4.1e-10 Score=101.60 Aligned_cols=48 Identities=27% Similarity=0.508 Sum_probs=40.2
Q ss_pred CCccccccccccccCC--------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 77 PYEFRCPISGEIMTDP--------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p--------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.++..||||++.+.++ +.++|||.||+.||.+|+.. ..+||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4467899999987653 45689999999999999985 668999999875
No 47
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.8e-10 Score=93.73 Aligned_cols=54 Identities=26% Similarity=0.580 Sum_probs=44.7
Q ss_pred CCCccccccccccccC--CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 012677 76 LPYEFRCPISGEIMTD--PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI 130 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~--p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~ 130 (458)
-...+.||||++-+.. ||.+.|||.||+.||...++.+ ..||+|++.++...+.
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFH 183 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhe
Confidence 3456899999998865 6778999999999999999864 4799999988766553
No 48
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.90 E-value=3.5e-07 Score=90.25 Aligned_cols=274 Identities=12% Similarity=0.077 Sum_probs=193.0
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
...++..|. .+.-.+..|...|..+....+........ .-.+..|...|++. .+...+..++..|..|...++.|
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l-~~~~~~l~~~l~~~---~~~~~~~~~v~~L~~LL~~~~~R 178 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDL-DYYFNWLKEQLNNI---TNNDYVQTAARCLQMLLRVDEYR 178 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHH-HHHHHHHHHHhhcc---CCcchHHHHHHHHHHHhCCchHH
Confidence 344555554 45566777888888777543322110000 01223455555543 24677888889999999999999
Q ss_pred hhhhcCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC-ChHHHHHHHHHHHHhc
Q 012677 249 RLVAENPLAIPLLIDSVRTG--TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG-HPLAMKDVASAIFSLC 325 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~ 325 (458)
..+.+.+ +++.|+.+|+.. +.+.+-.++-++.-|+.+++....+...+.|+.|+.+++.. ..++..-++.+|.||.
T Consensus 179 ~~f~~~~-~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll 257 (429)
T cd00256 179 FAFVLAD-GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI 257 (429)
T ss_pred HHHHHcc-CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 9999886 899999999863 56889999999999999888777777789999999999875 7788889999999998
Q ss_pred cccc-------chhHHHhhCcHHHHHHHhccC----CcH-------HHHHHHHHHhcCCH--------------------
Q 012677 326 ILLE-------NKRRAVHAGAVRVILRKIMEN----SLV-------DELLAILAMLSSHQ-------------------- 367 (458)
Q Consensus 326 ~~~~-------~~~~i~~~g~v~~Lv~ll~~~----~~~-------~~a~~~L~~La~~~-------------------- 367 (458)
.... ....+++.|+++.+-.+.... ++. +.--..+..+++.+
T Consensus 258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se 337 (429)
T cd00256 258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSE 337 (429)
T ss_pred hcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCc
Confidence 7441 234467777766554444322 222 22222223344222
Q ss_pred ----HHHHHHHhcC--CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHH
Q 012677 368 ----DAIEEIGELG--AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKA 441 (458)
Q Consensus 368 ----~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A 441 (458)
+|...+-+.+ .+..|+++|..++++.+..-|+.=+..++.+.|.. +.+++..|+=..+.+|+.+.++.++.+|
T Consensus 338 ~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-r~i~~~lg~K~~vM~Lm~h~d~~Vr~eA 416 (429)
T cd00256 338 KFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-KDVVEQLGGKQRVMRLLNHEDPNVRYEA 416 (429)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-HHHHHHcCcHHHHHHHhcCCCHHHHHHH
Confidence 3344454444 47889999976666888888888889999877643 5888889999999999999999999999
Q ss_pred HHHHHHHH
Q 012677 442 NGILERLN 449 (458)
Q Consensus 442 ~~~L~~l~ 449 (458)
..+++.|=
T Consensus 417 L~avQklm 424 (429)
T cd00256 417 LLAVQKLM 424 (429)
T ss_pred HHHHHHHH
Confidence 99998763
No 49
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.85 E-value=2.1e-09 Score=71.62 Aligned_cols=44 Identities=45% Similarity=0.963 Sum_probs=38.4
Q ss_pred ccccccccccCCccCC-CcccccHHHHHHHHhcCCCCCCCCCccC
Q 012677 81 RCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l 124 (458)
.|+||++.+.+++.++ |||.||..|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999998888775 9999999999999987677899998753
No 50
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.83 E-value=5.2e-08 Score=94.14 Aligned_cols=213 Identities=19% Similarity=0.143 Sum_probs=154.7
Q ss_pred hhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhcc-----CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 170 LNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGEST-----DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 170 l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~-----g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+-.+++.++++.+.....+..+..+..+++.....+.... ....+++.++..+ |..++..|+..|..+...
T Consensus 60 ~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~----D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 60 FLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN----DSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp --HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S----SHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC----CHHHHHHHHHHHHHHHHc
Confidence 3445555545677788888888888888776665554411 2578888877764 899999999999998776
Q ss_pred chhhhhhhcCCCCHHHHHHHHhc----CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHh------hc-CChHH
Q 012677 245 DENKRLVAENPLAIPLLIDSVRT----GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLL------EE-GHPLA 313 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL------~~-~~~~~ 313 (458)
.+.+..-... +.++.++..|.+ ++.+.+..++.+|.+|...+.+|..+.+.|+++.|+.+| .+ .+.+.
T Consensus 136 ~~~~~~~~~~-~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVK-EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHH-HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHH-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 6543333222 367778887775 345677999999999999999999999999999999999 22 26788
Q ss_pred HHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHH--HHHHHHhcCCHHHHHHHHh
Q 012677 314 MKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQD--AIEEIGELGAIPCLLRIIR 387 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~--~~~~i~~~g~i~~Lv~ll~ 387 (458)
+.+++-+++.|+.+++....+...+.++.|+++++.. ++..-++++|.||...+. ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 8999999999999999999999999999999999865 678889999999999554 8888888885554444443
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.6e-07 Score=86.12 Aligned_cols=179 Identities=17% Similarity=0.168 Sum_probs=153.0
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHH
Q 012677 268 GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRK 346 (458)
Q Consensus 268 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~l 346 (458)
.+.+-++.|..-|..++.+-+|...+...|+..+++..+++++..+|..|+++|...+.+.+ ....+++.|+++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 36788898888899999988999999999999999999999999999999999999998775 56678999999999999
Q ss_pred hccC---CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhc-CChhHHhHHHHHHHHHhccCchhHHHHHHhhh
Q 012677 347 IMEN---SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRES-TCERNKENCAAILYNICFTDRTRTREIMEEEN 421 (458)
Q Consensus 347 l~~~---~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g 421 (458)
+... ..+.+|+-++..|-. ++.+...+...+|...|...|++. .+...+..++-.+..|....... ..++...|
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~-~d~~~~~~ 253 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD-EDIASSLG 253 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh-hhHHHHhh
Confidence 9855 467889999999998 788999999999999999999962 46899999999999999866543 24666778
Q ss_pred hhHHHHHHhhhCCHHHHHHHHHHHHH
Q 012677 422 ANGTLSRLAENGTSRAKRKANGILER 447 (458)
Q Consensus 422 ~~~~L~~ll~~~~~~~~~~A~~~L~~ 447 (458)
+...+..+....+..+.+.|...+-.
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~ 279 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLS 279 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHH
Confidence 88888888887777777777665543
No 52
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.77 E-value=5.3e-09 Score=67.16 Aligned_cols=39 Identities=56% Similarity=1.126 Sum_probs=35.7
Q ss_pred cccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCC
Q 012677 82 CPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQT 120 (458)
Q Consensus 82 C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c 120 (458)
|+||++...+++.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998556689987
No 53
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.76 E-value=7.4e-07 Score=98.05 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=56.7
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..+..|++.|. .++.+|..|+..|..+.. .+.++.|+..|.+. +..++..|+.+|..+.....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~----d~~VR~~Aa~aL~~l~~~~~ 684 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDG----AAAVRRAAAEGLRELVEVLP 684 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhccC
Confidence 35667778884 568888888888876532 46778888888764 78888888888876632110
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSL 283 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L 283 (458)
..+.|...|+++++.+|..|+.+|..+
T Consensus 685 ----------~~~~L~~~L~~~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 685 ----------PAPALRDHLGSPDPVVRAAALDVLRAL 711 (897)
T ss_pred ----------chHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 123344455555555555555554443
No 54
>PHA02926 zinc finger-like protein; Provisional
Probab=98.75 E-value=5.5e-09 Score=90.83 Aligned_cols=50 Identities=22% Similarity=0.431 Sum_probs=39.4
Q ss_pred CCCccccccccccccC---------CccCCCcccccHHHHHHHHhcC-----CCCCCCCCccCC
Q 012677 76 LPYEFRCPISGEIMTD---------PVVLANGQTFDRPCIQRWLDEG-----NRTCPQTRQVLS 125 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~---------p~~l~cgh~fc~~ci~~~~~~~-----~~~CP~c~~~l~ 125 (458)
...+..|+||++...+ ++..+|+|.||..||.+|.... ..+||.||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3457889999987633 3455899999999999999742 246999999875
No 55
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.8e-06 Score=81.51 Aligned_cols=182 Identities=17% Similarity=0.126 Sum_probs=149.5
Q ss_pred CChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc-chhHhhccCchHHHHH
Q 012677 226 TDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS-NKLIIGKLGAMTPLID 304 (458)
Q Consensus 226 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~ 304 (458)
.+.+-++.|+.-|..++.+=+|.-.++..| +...++..+.+++..+|+.|+++|...+.+.. ....+.+.|+.+.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLG-GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhcc-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 477889999999999998888999999987 55557779999999999999999999998764 4778889999999999
Q ss_pred HhhcC-ChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC----CcHHHHHHHHHHhcC-CHHHHHHHHhcC
Q 012677 305 LLEEG-HPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN----SLVDELLAILAMLSS-HQDAIEEIGELG 377 (458)
Q Consensus 305 lL~~~-~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~-~~~~~~~i~~~g 377 (458)
.|.+. +..++..|+.|++.|-.+.. ....+...++...|...|.++ .++.+++..+..|.. ....+..+...|
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 99875 55778999999999998775 666788888999999999885 467889999999987 455555555667
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
....++.+.... +..+.+.++.++..+...-
T Consensus 254 f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 254 FQRVLENLISSL-DFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhHHHHHHhhcc-chhhhHHHHHHHHHHHHHH
Confidence 666666666644 4888999998887776544
No 56
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=3.1e-08 Score=92.02 Aligned_cols=62 Identities=21% Similarity=0.422 Sum_probs=45.6
Q ss_pred Cccccccccc-cccCCc----cCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCC----CcccHHHHHHH
Q 012677 78 YEFRCPISGE-IMTDPV----VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV----LIPNHLVREMI 139 (458)
Q Consensus 78 ~~~~C~ic~~-~~~~p~----~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~----~~~n~~l~~~i 139 (458)
++..||+|.. ....|- +.+|||.||.+|+..+|..+...||.|+.++.... +.++..+..-|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence 3467999997 244553 22799999999999998877779999999998765 44555443333
No 57
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.9e-08 Score=96.69 Aligned_cols=69 Identities=26% Similarity=0.497 Sum_probs=55.9
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcC----CCCCCCCCccCCCCCCccc----HHHHHHHHHHHHHhC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEG----NRTCPQTRQVLSHTVLIPN----HLVREMISQWCKEHG 147 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~----~~~CP~c~~~l~~~~~~~n----~~l~~~i~~~~~~~~ 147 (458)
+..||||++...-|+.+.|||.||..||.++|..+ ...||.|+..+...++.|- ..-+.-+..++..||
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 67899999999999999999999999999999753 4589999999887554442 233445777888887
No 58
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.65 E-value=1.8e-08 Score=66.52 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=34.6
Q ss_pred ccccccccc---cCCccCCCcccccHHHHHHHHhcCCCCCCCCCc
Q 012677 81 RCPISGEIM---TDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQ 122 (458)
Q Consensus 81 ~C~ic~~~~---~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~ 122 (458)
.|++|.+.+ ..|++++|||+||..|+..+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 399999988 357788999999999999998 34568999985
No 59
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.4e-06 Score=89.47 Aligned_cols=210 Identities=17% Similarity=0.148 Sum_probs=155.8
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHh-cccCch-hhhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhcc-C
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILN-LSIHDE-NKRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSAL-D 287 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~-ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~-~ 287 (458)
+..|+.-|... +|+..+-.|+.-|.. |+...+ .-..|--. -++|.|+.+|+.. +.++...||++|.+|+.. +
T Consensus 169 ~kkLL~gL~~~---~Des~Qleal~Elce~L~mgnEesLs~fpv~-slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 169 AKKLLQGLQAE---SDESQQLEALTELCEMLSMGNEESLSGFPVK-SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHhcccc---CChHHHHHHHHHHHHHHhhcchhhhccccHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 45555555543 377777777777763 454444 22222222 3899999999986 899999999999999864 4
Q ss_pred cchhHhhccCchHHHHHHh-hcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhc--cCCcHHHHHHHHHHhc
Q 012677 288 SNKLIIGKLGAMTPLIDLL-EEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIM--ENSLVDELLAILAMLS 364 (458)
Q Consensus 288 ~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~--~~~~~~~a~~~L~~La 364 (458)
.....+++.++||.|+.-| .-...++.++++.||-.|+.... ..+.++|++...+.+|. +-..+..|+++-.|+|
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCC 322 (1051)
T ss_pred chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999999999844 45678899999999999987665 56889999999998885 3368999999999999
Q ss_pred C--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC---chhHHHHHHhhhhhHHHHHHhh
Q 012677 365 S--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD---RTRTREIMEEENANGTLSRLAE 431 (458)
Q Consensus 365 ~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~~~~~g~~~~L~~ll~ 431 (458)
. .++.-..++++ +|.|-.+|+..+ .+..+.++-++..++... +++...+. ..|.+.-...|+.
T Consensus 323 ksi~sd~f~~v~ea--lPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~-s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 323 KSIRSDEFHFVMEA--LPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLC-SHDLITNIQQLLS 390 (1051)
T ss_pred hcCCCccchHHHHH--HHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHh-chhHHHHHHHHHh
Confidence 8 56666666654 899999999765 888888888888887643 34443333 3565555555543
No 60
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2e-08 Score=97.97 Aligned_cols=68 Identities=34% Similarity=0.611 Sum_probs=58.0
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKE 145 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~ 145 (458)
...+++.||||++++.+|++++|||+||+.|+..++. ....||.|+. ... .+.+|..+..+++.+...
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~ 76 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQL 76 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhc
Confidence 3567889999999999999999999999999999998 6678999996 322 667899998888877654
No 61
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.7e-08 Score=101.75 Aligned_cols=56 Identities=18% Similarity=0.424 Sum_probs=50.3
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~ 131 (458)
...-++||+|..-++|.|++.|||.||..|+.+.+....+.||.|+.+|...++.+
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 34567899999999999999999999999999999888889999999998887654
No 62
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.63 E-value=2.6e-08 Score=73.51 Aligned_cols=40 Identities=43% Similarity=0.874 Sum_probs=32.3
Q ss_pred ccccccccccCCc------------c-CCCcccccHHHHHHHHhcCCCCCCCCC
Q 012677 81 RCPISGEIMTDPV------------V-LANGQTFDRPCIQRWLDEGNRTCPQTR 121 (458)
Q Consensus 81 ~C~ic~~~~~~p~------------~-l~cgh~fc~~ci~~~~~~~~~~CP~c~ 121 (458)
.|+||++.+.+|. . .+|||.||..||.+|++. ..+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 4999999995542 2 379999999999999985 55999997
No 63
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.5e-08 Score=90.40 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=44.8
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHH-HHhcCCCCCCCCCccCCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQR-WLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~-~~~~~~~~CP~c~~~l~~~ 127 (458)
..++.|+||++.+.+|..++|||.||.+||.. |-.+....||.||+.....
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 45889999999999999999999999999999 8877666799999876543
No 64
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.7e-06 Score=85.80 Aligned_cols=254 Identities=16% Similarity=0.164 Sum_probs=187.4
Q ss_pred hhhhhHHhhc--CCcHHHHHHHHHHHH-HHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 169 HLNSLLEKMS--SSLSDQKEAAKELRL-LTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 169 ~l~~Lv~~l~--~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.+++|++-|. +++..|.+|+..|.. |.-.++..-..|-- .-.+|.|+.+|+.. .+.++...|+.+|.+|+.--
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv-~slvp~Lv~LL~~E---~n~DIMl~AcRaltyl~evl 243 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPV-KSLVPVLVALLSHE---HNFDIMLLACRALTYLCEVL 243 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccH-HHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhc
Confidence 5778888884 467788899988874 44445544433333 46899999999874 57899999999999998654
Q ss_pred h-hhhhhhcCCCCHHHHHH-HHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 246 E-NKRLVAENPLAIPLLID-SVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 246 ~-~~~~i~~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
+ ....+++. ++||.|+. ++.-.-.++-+.+..+|..|+... -..|.++|+|-..+..|+=-+..+|..|+....|
T Consensus 244 P~S~a~vV~~-~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN 320 (1051)
T KOG0168|consen 244 PRSSAIVVDE-HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAAN 320 (1051)
T ss_pred cchhheeecc-cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45555565 59999886 455567899999999999998743 3567789999999988876677899999999999
Q ss_pred hcccc--cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC----CHHHHHHHHhcCCHHHHHHHHhhcC---Ch
Q 012677 324 LCILL--ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS----HQDAIEEIGELGAIPCLLRIIREST---CE 392 (458)
Q Consensus 324 L~~~~--~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~----~~~~~~~i~~~g~i~~Lv~ll~~~~---~~ 392 (458)
+|..- +.=.-++ .++|.|..+|... ...+.++..+..++. .++--+++...|.|.....+|.... +.
T Consensus 321 ~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~ 398 (1051)
T KOG0168|consen 321 CCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSN 398 (1051)
T ss_pred HHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccc
Confidence 98743 2222233 4689999999754 566776666666654 5677788999999999999987432 35
Q ss_pred hHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh
Q 012677 393 RNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN 432 (458)
Q Consensus 393 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~ 432 (458)
.+....++.|..+|.+.+--.+.+ ...+....|-.++..
T Consensus 399 ~~~~~vIrmls~msS~~pl~~~tl-~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 399 GTYTGVIRMLSLMSSGSPLLFRTL-LKLDIADTLKRILQG 437 (1051)
T ss_pred cchhHHHHHHHHHccCChHHHHHH-HHhhHHHHHHHHHhc
Confidence 566778888888898877554444 446777777777653
No 65
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.61 E-value=6.3e-06 Score=90.80 Aligned_cols=221 Identities=17% Similarity=0.158 Sum_probs=136.8
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..++.|++.|. ++..+|..|+..|..+... ....+.|...|.+. ++.++..|+.+|..+...
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~-----------~~~~~~L~~~L~~~----d~~VR~~A~~aL~~~~~~-- 714 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEV-----------LPPAPALRDHLGSP----DPVVRAAALDVLRALRAG-- 714 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----------cCchHHHHHHhcCC----CHHHHHHHHHHHHhhccC--
Confidence 35677887775 4577888888888766431 12234555666653 677777777777665311
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc--------cCcc---h----hHhh-----ccCchHHHHHHh
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA--------LDSN---K----LIIG-----KLGAMTPLIDLL 306 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~--------~~~~---~----~~i~-----~~g~i~~Lv~lL 306 (458)
-...|+..|++++..+|..|+.+|..+.. .|++ + ..++ ....++.|..++
T Consensus 715 ----------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll 784 (897)
T PRK13800 715 ----------DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALT 784 (897)
T ss_pred ----------CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHh
Confidence 12334555566666666666665554310 0000 0 0011 112356677777
Q ss_pred hcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHH
Q 012677 307 EEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLR 384 (458)
Q Consensus 307 ~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ 384 (458)
+++++.+|..|+.+|..+.... .+++.|+..|.++ .++..|+.+|..+.. ..+++.|+.
T Consensus 785 ~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~ 845 (897)
T PRK13800 785 GDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVE 845 (897)
T ss_pred cCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHH
Confidence 7777777777777776663221 1234566667665 366667777765532 235689999
Q ss_pred HHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 385 IIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 385 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
+|.+. +..++..|+.+|..+. .+ ....+.|...+.+.+..++..|..+|.
T Consensus 846 ~L~D~-~~~VR~~A~~aL~~~~-~~----------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 846 ALTDP-HLDVRKAAVLALTRWP-GD----------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HhcCC-CHHHHHHHHHHHhccC-CC----------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99865 4999999999998862 12 124567778888889999999999886
No 66
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=8.8e-09 Score=95.36 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=57.9
Q ss_pred CCCCccccccccccccCCccCC-CcccccHHHHHHHHhcCCCCCCCCCccCCC-CCCcccHHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLSH-TVLIPNHLVREMISQWC 143 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~-~~~~~n~~l~~~i~~~~ 143 (458)
.+.-++.||||+++++.-++++ |+|.||..||..-+..++..||.||+.+.. ..++++.....+|.+..
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 3556789999999999988885 999999999999999999999999999865 46777776767776543
No 67
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.58 E-value=8.8e-06 Score=80.43 Aligned_cols=228 Identities=16% Similarity=0.078 Sum_probs=161.9
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhh-hhhcC----CCCHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKR-LVAEN----PLAIPLLIDSVRTGTIETRRNAAAALFSLS 284 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~-~i~~~----~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 284 (458)
..+..++.+|+.. ...++....+..+..+....+.+. .+.+. ......++.+|..++.-+...++..|..|.
T Consensus 53 ~y~~~~l~ll~~~---~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 53 QYVKTFVNLLSQI---DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHHhcc---CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 4567778888764 356777777777766665555433 33332 235566788999888889999999999987
Q ss_pred ccCcch-hHhhccCchHHHHHHhhcC-ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC----CcHHHHHH
Q 012677 285 ALDSNK-LIIGKLGAMTPLIDLLEEG-HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN----SLVDELLA 358 (458)
Q Consensus 285 ~~~~~~-~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~ 358 (458)
...... ......-.+.-|...|+++ +...+..++.+|..|...++.|..+.+.++++.|+.+|+.. .++..++-
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 643221 1000011223444555544 46778888999999999999999999999999999999753 56888999
Q ss_pred HHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc-----hhHHHHHHhhhhhHHHHHHhhhC
Q 012677 359 ILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR-----TRTREIMEEENANGTLSRLAENG 433 (458)
Q Consensus 359 ~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-----~~~~~~~~~~g~~~~L~~ll~~~ 433 (458)
+++-|+.+++....+...+.|+.|+++++.+.-+++-.-++.+|.||...+. ......+-+.|..+.+..|....
T Consensus 210 ~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 210 CIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 9999999998888888889999999999977668999999999999998542 12223344456665555555442
Q ss_pred --CHHHHHH
Q 012677 434 --TSRAKRK 440 (458)
Q Consensus 434 --~~~~~~~ 440 (458)
++++.+-
T Consensus 290 ~~DedL~ed 298 (429)
T cd00256 290 YDDEDLTDD 298 (429)
T ss_pred CCcHHHHHH
Confidence 5554443
No 68
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.52 E-value=3.6e-08 Score=68.39 Aligned_cols=45 Identities=29% Similarity=0.721 Sum_probs=31.5
Q ss_pred CCccccccccccccCCccC-CCcccccHHHHHHHHh-cCCCCCCCCC
Q 012677 77 PYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLD-EGNRTCPQTR 121 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~-~~~~~CP~c~ 121 (458)
.-.+.|||++..|++||.- .|||+|++..|.+|+. .+...||+.+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 4467899999999999985 7999999999999994 3355899954
No 69
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=2.5e-05 Score=83.44 Aligned_cols=269 Identities=14% Similarity=0.121 Sum_probs=164.7
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-hhhhhhcCCCCHH
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-NKRLVAENPLAIP 259 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~~i~ 259 (458)
..+|..|+.++..++...+.++.........+|.++..+......+|.+....++.+|-.+....+ .-+..... ++.
T Consensus 173 ~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~ 250 (1075)
T KOG2171|consen 173 SPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQ 250 (1075)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHH
Confidence 348889999998888766544444333234678788777765444566666777777766654433 11111111 333
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHHhhccCc-------------------------------------------ch---h
Q 012677 260 LLIDSVRTG--TIETRRNAAAALFSLSALDS-------------------------------------------NK---L 291 (458)
Q Consensus 260 ~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~-------------------------------------------~~---~ 291 (458)
.-..+.++. +..+|..|...|..++.+.. +. .
T Consensus 251 ~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~ 330 (1075)
T KOG2171|consen 251 FSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAE 330 (1075)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHH
Confidence 333333333 45566666655555444310 00 0
Q ss_pred ----H----hhccCchHHHH----HHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHH
Q 012677 292 ----I----IGKLGAMTPLI----DLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELL 357 (458)
Q Consensus 292 ----~----i~~~g~i~~Lv----~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~ 357 (458)
. ++-.-+.|++. .+|.+.+..-|..|+.+|..++........-.=..+++..+..|.++ .++..|+
T Consensus 331 ~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~ 410 (1075)
T KOG2171|consen 331 QALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAAL 410 (1075)
T ss_pred HHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 0 00011333333 45566777788888888877765433211111125677777888887 5788899
Q ss_pred HHHHHhcC--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchh-HHHHHHhhhhhH-HHHHHhhhC
Q 012677 358 AILAMLSS--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTR-TREIMEEENANG-TLSRLAENG 433 (458)
Q Consensus 358 ~~L~~La~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~g~~~-~L~~ll~~~ 433 (458)
.++..++. .|+..+.. .+-.++.|+..+.+..+.+++.+|+.+|.|+....... ....+ .+.+. .+..|.+++
T Consensus 411 naigQ~stdl~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~ 487 (1075)
T KOG2171|consen 411 NAIGQMSTDLQPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSS 487 (1075)
T ss_pred HHHHhhhhhhcHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCC
Confidence 99999998 35444444 44567889999988777899999999999998876532 11111 23344 333456788
Q ss_pred CHHHHHHHHHHHHHHHhhHhh
Q 012677 434 TSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 434 ~~~~~~~A~~~L~~l~~~~~~ 454 (458)
++.+++.++.+|...+..++.
T Consensus 488 ~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 488 KPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred chhHHHHHHHHHHHHHHHHhh
Confidence 999999999999988876654
No 70
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.3e-07 Score=87.71 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=40.8
Q ss_pred cccccccccccCC---ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 80 FRCPISGEIMTDP---VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 80 ~~C~ic~~~~~~p---~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
++|.||+|.+++- ++|||+|.||..||..|+.+....||+|++.....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 6899999999754 56899999999999999987656799999876543
No 71
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.46 E-value=9.5e-08 Score=88.21 Aligned_cols=67 Identities=21% Similarity=0.510 Sum_probs=55.9
Q ss_pred CCCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCC----CCcccHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT----VLIPNHLVREMISQW 142 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~----~~~~n~~l~~~i~~~ 142 (458)
++.+..+|++|..+|.|+.++ .|=|+||++||.++|.. ..+||.|+..+... .+.++.+++.++.++
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 355677899999999999887 59999999999999986 77899999877543 467788888887644
No 72
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.45 E-value=1.9e-06 Score=69.61 Aligned_cols=154 Identities=17% Similarity=0.197 Sum_probs=119.8
Q ss_pred hhccCchHHHHHHhhcC-ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHH
Q 012677 293 IGKLGAMTPLIDLLEEG-HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDA 369 (458)
Q Consensus 293 i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~ 369 (458)
+...+.+..||.=.... +.+.++....-|.|.+-++-|-.-+.+..+++..+.-|..+ .+.+-+++.|+|+|.++.+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 44456777888877664 88999999999999999999999999999999999999877 5788999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 370 IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 370 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
++.|++++++|.++..+.++. +.+.-.|+.+|+.|+.+..... ..+.....+..+.+...+.+.+.+-.|...|...
T Consensus 92 ~~~I~ea~g~plii~~lssp~-e~tv~sa~~~l~~l~~~~Rt~r-~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPP-EITVHSAALFLQLLEFGERTER-DELLSPAVVRTVQRWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred HHHHHHhcCCceEEeecCCCh-HHHHHHHHHHHHHhcCcccchh-HHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999999999654 8888889999999998776432 3332234444444444444445555555555443
No 73
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.2e-07 Score=99.70 Aligned_cols=121 Identities=29% Similarity=0.433 Sum_probs=97.9
Q ss_pred HHHHHHHHhcCCCCcChhHHHHHHHHHHhh--cccc-c----------cCCCCcCCCCCCCCcCCCCCCccccccccccc
Q 012677 23 LQRLVKAILDEDDYGGLQVTNEALRVLSCL--KDLK-L----------KKPHSFKGGAAGDDHLLGLPYEFRCPISGEIM 89 (458)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~C~ic~~~~ 89 (458)
...|+.+++.|+++|+.+.|.++.+.+++. +... + +...... .......++.|++|.-|+...+|
T Consensus 803 ~~~F~~avA~D~RSys~~lF~~a~~~~~k~~l~~~~~Ie~~s~la~~~~~~~~~~--~~eee~l~dvpdef~DPlm~Tlm 880 (943)
T KOG2042|consen 803 EPSFVEAVAKDGRSYSEELFNHAISILRKRILKSSRQIEEFSELAERVEATASID--AEEEEELGDVPDEFLDPLMSTLM 880 (943)
T ss_pred chhHHHHHhccccccCHHHHhhhHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccCchhhhCccccccC
Confidence 678999999999999999999999999332 2221 0 0000001 11135567799999999999999
Q ss_pred cCCccCC-CcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHh
Q 012677 90 TDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEH 146 (458)
Q Consensus 90 ~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~ 146 (458)
.|||.+| .|++.||+-|.+++-. ..+-|+||.+++...+.||-.+++-|+.|..++
T Consensus 881 ~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 881 SDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred CCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 9999998 9999999999999985 557999999999999999999999999998764
No 74
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=4.5e-05 Score=70.35 Aligned_cols=269 Identities=17% Similarity=0.167 Sum_probs=188.0
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
+..++..+. .++.+|..|+..+..++.. ..+.....+...++.|..++... ++ .+.|+.+|.|++....-+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~----~~--~~~a~~alVnlsq~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL----DP--AEPAATALVNLSQKEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc----cc--ccHHHHHHHHHHhhHHHH
Confidence 445777774 5688999999999888875 55555555456678888888864 33 678999999999999888
Q ss_pred hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-------cCchHHHHHHhhcC-C-hHHHHHHHH
Q 012677 249 RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-------LGAMTPLIDLLEEG-H-PLAMKDVAS 319 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-------~g~i~~Lv~lL~~~-~-~~~~~~a~~ 319 (458)
+.+... .+..++.++-.+....-...+.+|.||+..++....+.. .|.++..+...+.+ + ..-..+-+.
T Consensus 77 ~~ll~~--~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 77 KKLLQD--LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHHH--HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 888886 778888888888778888899999999998866444321 34444444444443 2 234467788
Q ss_pred HHHHhcccccchhHHHhhCcHHH--HHHHhccC-CcH-HHHHHHHHHhcCCHHHHHHHHhcC--CHHHHH----------
Q 012677 320 AIFSLCILLENKRRAVHAGAVRV--ILRKIMEN-SLV-DELLAILAMLSSHQDAIEEIGELG--AIPCLL---------- 383 (458)
Q Consensus 320 aL~~L~~~~~~~~~i~~~g~v~~--Lv~ll~~~-~~~-~~a~~~L~~La~~~~~~~~i~~~g--~i~~Lv---------- 383 (458)
.+.||+.....|..+.+...++. |+.+=+.+ .++ ...+++|.|.|........+++.+ .+|.|+
T Consensus 155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~s 234 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELS 234 (353)
T ss_pred HHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccC
Confidence 88999999999888777653332 22222212 343 338899999999888888887744 233333
Q ss_pred -----------HHHh----hcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh-hCCHHHHHHHHHHHHH
Q 012677 384 -----------RIIR----ESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE-NGTSRAKRKANGILER 447 (458)
Q Consensus 384 -----------~ll~----~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~ 447 (458)
+++. ...++.++..-+.+|.-||....++ +.++.-|+.+.+.++=. ..++.+.+.+-.+.+.
T Consensus 235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR--e~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR--EVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH--HHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2222 1235889999999999999988664 77776776655555432 2467788888888887
Q ss_pred HHh
Q 012677 448 LNK 450 (458)
Q Consensus 448 l~~ 450 (458)
+-+
T Consensus 313 Lv~ 315 (353)
T KOG2973|consen 313 LVR 315 (353)
T ss_pred HHh
Confidence 766
No 75
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.39 E-value=1.7e-05 Score=82.64 Aligned_cols=135 Identities=21% Similarity=0.239 Sum_probs=75.6
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
+...++.++ .+...++-+.-.+..+...+++.... ++..|.+-|.+. ++.++..|+.+|.++..
T Consensus 44 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l------~~n~l~kdl~~~----n~~~~~lAL~~l~~i~~----- 108 (526)
T PF01602_consen 44 FMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL------IINSLQKDLNSP----NPYIRGLALRTLSNIRT----- 108 (526)
T ss_dssp HHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH------HHHHHHHHHCSS----SHHHHHHHHHHHHHH-S-----
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH------HHHHHHHhhcCC----CHHHHHHHHhhhhhhcc-----
Confidence 334455543 44555555555555555554442111 133444444443 66777777777777662
Q ss_pred hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 249 RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
..++.. +++.+..++.++++.+|..|+.++..+...++. .+... .++.|..+|.+.++.++..|+.++..+
T Consensus 109 ~~~~~~--l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 109 PEMAEP--LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHH--HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred cchhhH--HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 122221 455666777777777777777777776554322 11112 466777777666777777777777777
No 76
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.5e-07 Score=85.22 Aligned_cols=47 Identities=23% Similarity=0.506 Sum_probs=39.5
Q ss_pred cccccccccccC---CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 80 FRCPISGEIMTD---PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~---p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..|.||++-+.. -+++||.|.||.+|+.+|+......||+||.+++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 469999987742 35679999999999999999666789999999874
No 77
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.39 E-value=9.8e-06 Score=84.43 Aligned_cols=280 Identities=14% Similarity=0.118 Sum_probs=178.2
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhc
Q 012677 130 IPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGES 208 (458)
Q Consensus 130 ~~n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~ 208 (458)
..++..+++.--++......-|. . -.-.+..+.+.+. +++..|..|+..|.++.. +....
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~---------~---~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~----- 113 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPE---------L---LILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE----- 113 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHH---------H---HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH-----
T ss_pred CCCHHHHHHHHHHHHHHhhcchh---------H---HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh-----
Confidence 45667777776666654322111 0 0124556666774 567888899999988873 33332
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
-.++.+..++.+. ++.++..|+.++..+....++ .+... .++.+..+|...++.++..|+.++..+...++
T Consensus 114 -~l~~~v~~ll~~~----~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 184 (526)
T PF01602_consen 114 -PLIPDVIKLLSDP----SPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDD 184 (526)
T ss_dssp -HHHHHHHHHHHSS----SHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHH
T ss_pred -HHHHHHHHHhcCC----chHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcc
Confidence 3456677777764 889999999999888765442 22222 57889999999999999999999999911111
Q ss_pred chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH 366 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~ 366 (458)
.-.. .-...++.|.+++...++-.+...+..|..++........- ...++.+..++.+. .+.-.|+.++..+...
T Consensus 185 ~~~~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 185 SYKS-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS 261 (526)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hhhh-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence 1011 11334555555666778888888888888887655432211 45677777777654 5677788888888776
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh-hCCHHHHHHHHHHH
Q 012677 367 QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE-NGTSRAKRKANGIL 445 (458)
Q Consensus 367 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L 445 (458)
+. .-..+++.|+.++.+ .++.++..++..|..|+...+. .+. ........+. +.+..++.++..+|
T Consensus 262 ~~-----~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~~l~~~~~~----~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL 328 (526)
T PF01602_consen 262 PE-----LLQKAINPLIKLLSS-SDPNVRYIALDSLSQLAQSNPP----AVF---NQSLILFFLLYDDDPSIRKKALDLL 328 (526)
T ss_dssp HH-----HHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHCCHCHH----HHG---THHHHHHHHHCSSSHHHHHHHHHHH
T ss_pred hH-----HHHhhHHHHHHHhhc-ccchhehhHHHHHHHhhcccch----hhh---hhhhhhheecCCCChhHHHHHHHHH
Confidence 66 223447888888884 4477888888888888876622 121 1122223333 56677888888877
Q ss_pred HHHHhhHh
Q 012677 446 ERLNKAAL 453 (458)
Q Consensus 446 ~~l~~~~~ 453 (458)
..++...+
T Consensus 329 ~~l~~~~n 336 (526)
T PF01602_consen 329 YKLANESN 336 (526)
T ss_dssp HHH--HHH
T ss_pred hhcccccc
Confidence 77775443
No 78
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.37 E-value=1.7e-05 Score=79.92 Aligned_cols=141 Identities=9% Similarity=0.071 Sum_probs=113.8
Q ss_pred cCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHH
Q 012677 308 EGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLL 383 (458)
Q Consensus 308 ~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv 383 (458)
..+...+.+|+-.+.+++..-. -+.-.-+..+..+||+++.+| .+...++++|.|+.. ....|..++..|+|..|.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 3467778888888888776543 233355568999999999988 567889999999988 788999999999999999
Q ss_pred HHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 384 RIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 384 ~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
.++.+.+ ..++..++|+|+++..+..+..+......-....++.+..+.+..+++++-.+|+|+.
T Consensus 468 s~~~~~~-~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 468 SMLTDPD-FNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHhcCCC-chHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 9999654 9999999999999999876543333332334566788888999999999999999986
No 79
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.5e-07 Score=86.05 Aligned_cols=49 Identities=27% Similarity=0.585 Sum_probs=40.7
Q ss_pred CCcccccccccccc-C------------CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMT-D------------PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~-~------------p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.++-.|.||++.|. . |..+||||.+|.+|+..|++. ..+||.||.++-.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~if 346 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVIF 346 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcccc
Confidence 45678999998853 2 467899999999999999985 6799999999644
No 80
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.36 E-value=4.8e-05 Score=73.08 Aligned_cols=277 Identities=12% Similarity=0.075 Sum_probs=184.7
Q ss_pred hhhhhhHHhhcC--CcHHHHHHHHHHHHHHhhCchhhhhhhhc-----cCChHHHhhccCCCCCCCChhHHHHHHHHHHh
Q 012677 168 SHLNSLLEKMSS--SLSDQKEAAKELRLLTKRMPLFRALFGES-----TDAIPLLLSPLSPGRADTDPGLLEDLITTILN 240 (458)
Q Consensus 168 ~~l~~Lv~~l~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ 240 (458)
..+..+|..++. ..+.....+..+..+-..+..--..+... .-.-+..+.+|... +.-+.+.+.+++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~----d~~iv~~~~~Ils~ 140 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQ----DTFIVEMSFRILSK 140 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcC----ChHHHHHHHHHHHH
Confidence 567777777762 24555566666666555443332223221 11246667777764 77777778888877
Q ss_pred cccCchhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc--CChHHHHHH
Q 012677 241 LSIHDENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE--GHPLAMKDV 317 (458)
Q Consensus 241 ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a 317 (458)
++....-+....+-.-....|...+++ .+.+....|++.|-.+...+++|..++...++..|+..+.+ .+-.++...
T Consensus 141 la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqs 220 (442)
T KOG2759|consen 141 LACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQS 220 (442)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHH
Confidence 765433222111111122344556666 57788888999999999999999999998889999998843 377888888
Q ss_pred HHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCH-------HH------------------
Q 012677 318 ASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQ-------DA------------------ 369 (458)
Q Consensus 318 ~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~-------~~------------------ 369 (458)
+-+++-|..++.....+-..+.++.|.+++++. .+..-+++++.|+.... +.
T Consensus 221 ifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 221 IFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE 300 (442)
T ss_pred HHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence 888888888887776676668888888888765 46666777777776522 11
Q ss_pred --------------------------------------------------------HHHHHhcC--CHHHHHHHHhhcCC
Q 012677 370 --------------------------------------------------------IEEIGELG--AIPCLLRIIRESTC 391 (458)
Q Consensus 370 --------------------------------------------------------~~~i~~~g--~i~~Lv~ll~~~~~ 391 (458)
...+.+.+ .+..|+++|+.+.+
T Consensus 301 rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D 380 (442)
T KOG2759|consen 301 RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND 380 (442)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC
Confidence 11221111 34555566665444
Q ss_pred hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 392 ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 392 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
+.+-.-|+.=+.....+.|. -+.+++..|+-..+.+|+.+.+++++-+|..+++.|=
T Consensus 381 p~iL~VAc~DIge~Vr~yP~-gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 381 PIILCVACHDIGEYVRHYPE-GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred CceeehhhhhHHHHHHhCch-HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 55555555556666655543 3588888999999999999999999999999988764
No 81
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.30 E-value=3.9e-06 Score=67.75 Aligned_cols=126 Identities=18% Similarity=0.207 Sum_probs=105.5
Q ss_pred CHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHH
Q 012677 257 AIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV 335 (458)
Q Consensus 257 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 335 (458)
.+..||.-+.. .+.+.++....-|.|++.++.|-..+.+..+++..|..|...+....+.+.+.|+|+|.+..|..-|+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 44556655544 58899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHH
Q 012677 336 HAGAVRVILRKIMEN--SLVDELLAILAMLSSH-QDAIEEIGELGAIPCL 382 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~L 382 (458)
+++++|.++..++++ ...-.++.+|..|+.. ..-|..+....++..+
T Consensus 97 ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v 146 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTV 146 (173)
T ss_pred HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHH
Confidence 999999999999988 4566688888888874 4457777654433333
No 82
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=4.2e-05 Score=78.43 Aligned_cols=214 Identities=17% Similarity=0.149 Sum_probs=165.4
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhhccC
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTG--TIETRRNAAAALFSLSALD 287 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~ 287 (458)
..|+.|++-+.+. +-.+-++.|+..|..+++. +|..+... ++++|+..|+.. ++++...+..++.++..++
T Consensus 22 ETI~kLcDRvess---TL~eDRR~A~rgLKa~srk--YR~~Vga~--Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 22 ETIEKLCDRVESS---TLLEDRRDAVRGLKAFSRK--YREEVGAQ--GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred hHHHHHHHHHhhc---cchhhHHHHHHHHHHHHHH--HHHHHHHc--ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 3566777666543 2446678888888877753 66777765 577799999875 8999999999999998776
Q ss_pred c------c-h----------hH-hhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc--chhHH-HhhCcHHHHHHH
Q 012677 288 S------N-K----------LI-IGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE--NKRRA-VHAGAVRVILRK 346 (458)
Q Consensus 288 ~------~-~----------~~-i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--~~~~i-~~~g~v~~Lv~l 346 (458)
+ + + +. |-..+-|..|+..+...+-.+|..+...|.+|-.+.. .+..+ +..-+|..|+.+
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 3 2 2 12 2347889999999999999999999999999976554 44444 445899999999
Q ss_pred hccC--CcHHHHHHHHHHhcCCH-HHHHHHHhcCCHHHHHHHHhhc---CChhHHhHHHHHHHHHhccCchhHHHHHHhh
Q 012677 347 IMEN--SLVDELLAILAMLSSHQ-DAIEEIGELGAIPCLLRIIRES---TCERNKENCAAILYNICFTDRTRTREIMEEE 420 (458)
Q Consensus 347 l~~~--~~~~~a~~~L~~La~~~-~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 420 (458)
|.+. .++..++-.|..|..+. ..++.++=.++...|..++... +..-+.+.|+..|-||-..+..++ .+..+.
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ-~~FrE~ 253 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQ-NFFREG 253 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchh-hHHhcc
Confidence 9987 68889999999999954 4455555588999999999852 234678999999999999887665 566678
Q ss_pred hhhHHHHHHhh
Q 012677 421 NANGTLSRLAE 431 (458)
Q Consensus 421 g~~~~L~~ll~ 431 (458)
+.++.|.+++.
T Consensus 254 ~~i~rL~klL~ 264 (970)
T KOG0946|consen 254 SYIPRLLKLLS 264 (970)
T ss_pred ccHHHHHhhcC
Confidence 99999998864
No 83
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.25 E-value=8.5e-07 Score=65.80 Aligned_cols=35 Identities=31% Similarity=0.696 Sum_probs=28.5
Q ss_pred CccC-CCcccccHHHHHHHHhcC--CCCCCCCCccCCC
Q 012677 92 PVVL-ANGQTFDRPCIQRWLDEG--NRTCPQTRQVLSH 126 (458)
Q Consensus 92 p~~l-~cgh~fc~~ci~~~~~~~--~~~CP~c~~~l~~ 126 (458)
|++. .|+|.|+..||.+|++.. ...||.||++...
T Consensus 46 plv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 46 PLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred ceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 5444 699999999999999853 4689999998643
No 84
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.5e-06 Score=86.42 Aligned_cols=124 Identities=26% Similarity=0.320 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCCCcChhHHHHHHHHHHhhc---cccc--------cCCCCcCCCCCCCCcCCCCCCccccccccccccCC
Q 012677 24 QRLVKAILDEDDYGGLQVTNEALRVLSCLK---DLKL--------KKPHSFKGGAAGDDHLLGLPYEFRCPISGEIMTDP 92 (458)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~C~ic~~~~~~p 92 (458)
-+|+.+++.|+++++.+.+..|.+++.+.. +..+ +.+.........++..+++||+|.-|+...+|+||
T Consensus 788 s~FveaVA~D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~r~~ea~EeED~GDvPDeFlDPLmftimkdP 867 (929)
T COG5113 788 SKFVEAVASDKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKVRVIEAVEEEDMGDVPDEFLDPLMFTIMKDP 867 (929)
T ss_pred HHHHHHHHcccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchhhhCchhhhcccCC
Confidence 579999999999999999999988876533 0000 00000000111145578899999999999999999
Q ss_pred ccCC-CcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCC
Q 012677 93 VVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGI 148 (458)
Q Consensus 93 ~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 148 (458)
|.+| .|-+.+|+-|..++-. ..+.|+-|.|++..++.||..+|+.|..|....+.
T Consensus 868 V~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~ 923 (929)
T COG5113 868 VKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQ 923 (929)
T ss_pred eecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcccc
Confidence 9997 7889999999999985 45899999999999999999999999999766543
No 85
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.20 E-value=1.6e-06 Score=78.42 Aligned_cols=67 Identities=21% Similarity=0.413 Sum_probs=57.0
Q ss_pred cccccccccccCCccCC-CcccccHHHHHHHHhcCCCCCCCCCcc-CCCCCCcccHHHHHHHHHHHHHh
Q 012677 80 FRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQV-LSHTVLIPNHLVREMISQWCKEH 146 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~-l~~~~~~~n~~l~~~i~~~~~~~ 146 (458)
+.||+|..++++|+.++ |||+||..||..-+-...+.||.|... +-...+.|+...+.-|+.+...+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 78999999999999995 899999999999887778899999653 44567889988888888887643
No 86
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.20 E-value=1.3e-06 Score=86.39 Aligned_cols=71 Identities=25% Similarity=0.454 Sum_probs=57.3
Q ss_pred CcCCCCCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc-cHHHHHHHHHH
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP-NHLVREMISQW 142 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~-n~~l~~~i~~~ 142 (458)
....++.+++.||+|+..+.||+.. .|||.||+.|+..|+.. +..||.|+..+......+ ....+..+.+|
T Consensus 13 ~~~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 13 HLGRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred ccCCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 4444577889999999999999995 99999999999999997 779999999987765554 34455666554
No 87
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.19 E-value=9.2e-05 Score=71.80 Aligned_cols=243 Identities=14% Similarity=0.180 Sum_probs=172.7
Q ss_pred hhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHh-cCCHHHHHHHHHH
Q 012677 201 FRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVR-TGTIETRRNAAAA 279 (458)
Q Consensus 201 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~ 279 (458)
.+..|.. .|++..|+.++.+... ...++..+...|..+. ..+|+..++..| ...++.+-+ ....+.....+++
T Consensus 172 LCD~iR~-~~~lD~Llrmf~aPn~--et~vRve~~rlLEq~~-~aeN~d~va~~~--~~~Il~lAK~~e~~e~aR~~~~i 245 (832)
T KOG3678|consen 172 LCDAIRL-DGGLDLLLRMFQAPNL--ETSVRVEAARLLEQIL-VAENRDRVARIG--LGVILNLAKEREPVELARSVAGI 245 (832)
T ss_pred hhhHhhc-cchHHHHHHHHhCCch--hHHHHHHHHHHHHHHH-hhhhhhHHhhcc--chhhhhhhhhcCcHHHHHHHHHH
Confidence 4556666 7999999999998622 2356778888887665 445777777764 332333333 3478889999999
Q ss_pred HHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc--cchhHHHhhCcHHHHHHHhccC--CcHH
Q 012677 280 LFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL--ENKRRAVHAGAVRVILRKIMEN--SLVD 354 (458)
Q Consensus 280 L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~--~~~~ 354 (458)
|.++-.+. +.+..++..|++..++-..+..+|.+...++-+|.|++.+. +.+.++++..+.+-|.-+-.+. -++.
T Consensus 246 l~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~ 325 (832)
T KOG3678|consen 246 LEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRL 325 (832)
T ss_pred HHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHH
Confidence 99998765 45889999999999999999999999999999999998765 5778899999999998887765 3577
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---HHHHHHHHhhc-------------------------CChhHHhHHHHHHHHHh
Q 012677 355 ELLAILAMLSSHQDAIEEIGELGA---IPCLLRIIRES-------------------------TCERNKENCAAILYNIC 406 (458)
Q Consensus 355 ~a~~~L~~La~~~~~~~~i~~~g~---i~~Lv~ll~~~-------------------------~~~~~~~~a~~~L~~L~ 406 (458)
.|+-+.+.|+.+.+.-..+.+.|. +.+|+..+.-+ ++......++++.+-.+
T Consensus 326 ~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~ 405 (832)
T KOG3678|consen 326 HACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCA 405 (832)
T ss_pred HHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHH
Confidence 788888889988877777766663 34444322100 01233344555554322
Q ss_pred cc---C-chhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 407 FT---D-RTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 407 ~~---~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
.. . .++ ..+..+-|+++.|-++..+.+.....-|..+|+.+.+
T Consensus 406 EAaIKs~Q~K-~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 406 EAAIKSLQGK-TKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHhccc-hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 11 1 122 2556678999999998887777777788888887764
No 88
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.18 E-value=0.00017 Score=70.91 Aligned_cols=257 Identities=15% Similarity=0.074 Sum_probs=176.6
Q ss_pred HHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcC--
Q 012677 191 LRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTG-- 268 (458)
Q Consensus 191 L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-- 268 (458)
|..+-+.++..+..+.- ....+.+..++-+. +.+++..+..+++.+..+...-..+.+.+ +--.++..|...
T Consensus 7 Lv~l~~~~p~l~~~~~~-~~~~~~i~~~lL~~----~~~vraa~yRilRy~i~d~~~l~~~~~l~-id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVL-SFFGERIQCMLLSD----SKEVRAAGYRILRYLISDEESLQILLKLH-IDIFIIRSLDRDNK 80 (371)
T ss_pred HHHHHHhCchhhhhhhH-HHHHHHHHHHHCCC----cHHHHHHHHHHHHHHHcCHHHHHHHHHcC-CchhhHhhhcccCC
Confidence 33444445555544443 33444455444332 57999999999999999998888888864 555566777654
Q ss_pred CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhc
Q 012677 269 TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIM 348 (458)
Q Consensus 269 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~ 348 (458)
+..-|++|...++.+.....+... ...|++..||.+..+.++..+..|+.+|..|+..++ ..++.+||+..|++.+.
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~ 157 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALI 157 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHH
Confidence 566789999999988776544332 367899999999999999999999999999987765 44578999999999998
Q ss_pred cC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhc-------CC--hhHHhHHHHHHHHHhccCchhHHHHH
Q 012677 349 EN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRES-------TC--ERNKENCAAILYNICFTDRTRTREIM 417 (458)
Q Consensus 349 ~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~-------~~--~~~~~~a~~~L~~L~~~~~~~~~~~~ 417 (458)
++ ++.+..+.++..+..+|..|+.+...--+..++.-+.+. +. ...+..+..+...|-++++ -..--.
T Consensus 158 d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G-Ll~l~~ 236 (371)
T PF14664_consen 158 DGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG-LLYLSM 236 (371)
T ss_pred hccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc-eeeeec
Confidence 76 677789999999999999998886544455555444322 11 1333333333333434443 110011
Q ss_pred HhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhhhhc
Q 012677 418 EEENANGTLSRLAENGTSRAKRKANGILERLNKAALIVHT 457 (458)
Q Consensus 418 ~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~ 457 (458)
....++..|+..+...++.+++....++..+-+..+..|+
T Consensus 237 ~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~ 276 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWT 276 (371)
T ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcc
Confidence 1124677788888888889999998888887776665543
No 89
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=9.7e-05 Score=79.11 Aligned_cols=238 Identities=16% Similarity=0.162 Sum_probs=157.5
Q ss_pred cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch--hhhhhhcCC
Q 012677 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE--NKRLVAENP 255 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~ 255 (458)
|.+...|..|+.+|..++.+.........+ .+++.++..|.++ .+.++-.|+.+++.++.+=. ..+...+.
T Consensus 359 S~~w~~R~AaL~Als~i~EGc~~~m~~~l~--~Il~~Vl~~l~Dp----hprVr~AA~naigQ~stdl~p~iqk~~~e~- 431 (1075)
T KOG2171|consen 359 STEWKERHAALLALSVIAEGCSDVMIGNLP--KILPIVLNGLNDP----HPRVRYAALNAIGQMSTDLQPEIQKKHHER- 431 (1075)
T ss_pred CCCHHHHHHHHHHHHHHHcccHHHHHHHHH--HHHHHHHhhcCCC----CHHHHHHHHHHHHhhhhhhcHHHHHHHHHh-
Confidence 456888999999999999887766555444 5677777777775 89999999999999997632 34444442
Q ss_pred CCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHH-HhhcCChHHHHHHHHHHHHhcccccch
Q 012677 256 LAIPLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLID-LLEEGHPLAMKDVASAIFSLCILLENK 331 (458)
Q Consensus 256 ~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~~~ 331 (458)
+.|.|+..+.+. +..++.+|+.+|.|++....+ ..+.- .+.+.+++. ++.++++.+++.++.+|...+..-+..
T Consensus 432 -l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 432 -LPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred -ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 778899888875 789999999999999875432 23322 556664444 556678999999999999998766655
Q ss_pred hHHHhhCcHHHHHHHhccC------CcHHHHHHHHHHhcCCHHHHHHHHhc--CCHHHHHHH---HhhcCChhHHhHHHH
Q 012677 332 RRAVHAGAVRVILRKIMEN------SLVDELLAILAMLSSHQDAIEEIGEL--GAIPCLLRI---IRESTCERNKENCAA 400 (458)
Q Consensus 332 ~~i~~~g~v~~Lv~ll~~~------~~~~~a~~~L~~La~~~~~~~~i~~~--g~i~~Lv~l---l~~~~~~~~~~~a~~ 400 (458)
-.-.-.-.+|.|...|... .++.+.+..+.-++ .--+|+.+... -.+..+..+ ... .++........
T Consensus 510 F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~-~AVGke~F~~~a~eliqll~~~~~~~~~-~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 510 FIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA-RAVGKEKFLPLAEELIQLLLELQGSDQD-DDDPLRSYMIA 587 (1075)
T ss_pred hHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH-HHhhhhhhhHhHHHHHHHHHhhcccchh-hccccHHHHHH
Confidence 5444456788888888654 24444444443332 23345555332 234444444 222 23666777778
Q ss_pred HHHHHhccCchhHHHHHHhhhhhHHHHH
Q 012677 401 ILYNICFTDRTRTREIMEEENANGTLSR 428 (458)
Q Consensus 401 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~ 428 (458)
...++|..-......++ .-.+++|.+
T Consensus 588 ~warmc~ilg~~F~p~L--~~Vmppl~~ 613 (1075)
T KOG2171|consen 588 FWARMCRILGDDFAPFL--PVVMPPLLK 613 (1075)
T ss_pred HHHHHHHHhchhhHhHH--HHHhHHHHH
Confidence 88888875544443444 234444443
No 90
>PF05536 Neurochondrin: Neurochondrin
Probab=98.16 E-value=9.2e-05 Score=76.48 Aligned_cols=152 Identities=17% Similarity=0.163 Sum_probs=120.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc----chhHhhccCchHHHHHHhhcC-------ChHHHHHHHHHHHHhc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDS----NKLIIGKLGAMTPLIDLLEEG-------HPLAMKDVASAIFSLC 325 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~~L~ 325 (458)
.+...+.+|+..+.+-|-.+...+.++...++ .+..|.++=+.+.|-++|+++ ....+.-|+.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45567788998886667777777788876554 244577755689999999873 2345677888899999
Q ss_pred ccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 326 ILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 326 ~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
..++....---.+-||.|++.+..+ .+...|+.+|..++.++++++.+++.|+++.|++.+.+ .+...+.|+.+|
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHH
Confidence 8666443322346799999999765 56889999999999999999999999999999999996 378899999999
Q ss_pred HHHhccCc
Q 012677 403 YNICFTDR 410 (458)
Q Consensus 403 ~~L~~~~~ 410 (458)
.+++....
T Consensus 164 ~~Lls~~~ 171 (543)
T PF05536_consen 164 LNLLSRLG 171 (543)
T ss_pred HHHHHhcc
Confidence 99988654
No 91
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.15 E-value=4e-06 Score=54.39 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=37.5
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
++++++.+++.|+++.|+++|.+. +..++++|+++|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 578999999999999999999954 59999999999999974
No 92
>PF05536 Neurochondrin: Neurochondrin
Probab=98.15 E-value=0.00022 Score=73.75 Aligned_cols=238 Identities=16% Similarity=0.086 Sum_probs=160.7
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch----hhhhhhcCCCCHHHHHHHHhcC-------CHHHHHHHHHH
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE----NKRLVAENPLAIPLLIDSVRTG-------TIETRRNAAAA 279 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~~~i~~Lv~lL~~~-------~~~~~~~a~~~ 279 (458)
.+..-+.+|+.. +.+-+-.++..+..+..+.+ .++.+.++- +...|-++|+++ ....+.-|+.+
T Consensus 6 ~l~~c~~lL~~~----~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~ai-g~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 6 SLEKCLSLLKSA----DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAI-GFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHHhccC----CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc-ChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 456667788775 55667788888888887655 244566664 467778899873 36678889999
Q ss_pred HHHhhccCcchhHhhccCchHHHHHHhhcCCh-HHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-CcHHHHH
Q 012677 280 LFSLSALDSNKLIIGKLGAMTPLIDLLEEGHP-LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-SLVDELL 357 (458)
Q Consensus 280 L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~ 357 (458)
|..++..++.+..=--.+-||.|+.++..++. .+...|+.+|..++.+++++..+++.|+++.|.+.+.++ ...+.++
T Consensus 81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al 160 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIAL 160 (543)
T ss_pred HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHH
Confidence 99999866443221114569999999988766 999999999999999999999999999999999999876 5688899
Q ss_pred HHHHHhcCCHHHHHHHHh-c----CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhh----HHHHH
Q 012677 358 AILAMLSSHQDAIEEIGE-L----GAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENAN----GTLSR 428 (458)
Q Consensus 358 ~~L~~La~~~~~~~~i~~-~----g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~----~~L~~ 428 (458)
.+|.+++...... ..-+ . ..++.|-+.+...+ ...+-..+..|..+-...+...........+. ..|..
T Consensus 161 ~lL~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~-~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 161 NLLLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFH-GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 9999987743211 1111 1 22344444444333 55666778888877665531100111122333 33445
Q ss_pred Hhhh-CCHHHHHHHHHHHHHHHhhHhhh
Q 012677 429 LAEN-GTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 429 ll~~-~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
++++ ..+..+..|..+...|-.....+
T Consensus 239 iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 239 ILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 5554 46677777777777666554333
No 93
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2e-06 Score=83.82 Aligned_cols=69 Identities=29% Similarity=0.542 Sum_probs=56.5
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCC-----CcccHHHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV-----LIPNHLVREMISQWCK 144 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~-----~~~n~~l~~~i~~~~~ 144 (458)
.+..+|.|-||+..+.+||++||||+||..||.+.+. ....||.|+.++.... ..+|+...++|..|+.
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 3578999999999999999999999999999999777 4568999999987531 2236666788887764
No 94
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.13 E-value=2.9e-06 Score=82.50 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccccccCCCCcCCCCCCCCcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhc----CCCCCC
Q 012677 43 NEALRVLSCLKDLKLKKPHSFKGGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE----GNRTCP 118 (458)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~----~~~~CP 118 (458)
..++.++.++++..-........ ......++...+..|.+|.+.-+|++...|-|.||+.||.+|... .+-+||
T Consensus 502 AnIF~LitRmRQ~aDHP~LVl~S--~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP 579 (791)
T KOG1002|consen 502 ANIFTLITRMRQAADHPDLVLYS--ANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCP 579 (791)
T ss_pred HHHHHHHHHHHHhccCcceeeeh--hhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCc
Confidence 47788888888665433222111 012334445667789999999999999999999999999998763 235999
Q ss_pred CCCccCCCC
Q 012677 119 QTRQVLSHT 127 (458)
Q Consensus 119 ~c~~~l~~~ 127 (458)
+|..+++.+
T Consensus 580 ~C~i~LsiD 588 (791)
T KOG1002|consen 580 VCHIGLSID 588 (791)
T ss_pred ccccccccc
Confidence 999998765
No 95
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.12 E-value=3.9e-05 Score=77.37 Aligned_cols=165 Identities=17% Similarity=0.141 Sum_probs=122.1
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
+++.+.+.. +...+.......+...+.+|+-.+.+++..-+. +...-...++.+||+++..++..++..++++|.||.
T Consensus 369 ~~k~~l~~~-t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV 447 (678)
T KOG1293|consen 369 LKKEILETT-TESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV 447 (678)
T ss_pred HHHHHHHHH-HHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence 344444432 233333333345677888888888888754332 444555778999999999999999999999999998
Q ss_pred c-cccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHH--HHHHHhcCCHHHHHHHHhhcCChhHHhHHHH
Q 012677 326 I-LLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDA--IEEIGELGAIPCLLRIIRESTCERNKENCAA 400 (458)
Q Consensus 326 ~-~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 400 (458)
- ..+-+..+++.|+|..|..++.+. ..+..++++|+++..+.+. +.+...-=....++.+..+. +..+|+.+..
T Consensus 448 mefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fq 526 (678)
T KOG1293|consen 448 MEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQ 526 (678)
T ss_pred hhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHH
Confidence 6 556788899999999999999987 6789999999999995433 33333333456677777765 5999999999
Q ss_pred HHHHHhccCchhH
Q 012677 401 ILYNICFTDRTRT 413 (458)
Q Consensus 401 ~L~~L~~~~~~~~ 413 (458)
.|+||.-+.....
T Consensus 527 llRNl~c~~~~sv 539 (678)
T KOG1293|consen 527 LLRNLTCNSRKSV 539 (678)
T ss_pred HHHHhhcCcHHHH
Confidence 9999998765443
No 96
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.08 E-value=3.3e-06 Score=54.83 Aligned_cols=40 Identities=30% Similarity=0.417 Sum_probs=37.3
Q ss_pred CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 287 DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 287 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
++++..+++.|+||+|+.+|+++++++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999999999999999973
No 97
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.5e-06 Score=90.06 Aligned_cols=48 Identities=31% Similarity=0.656 Sum_probs=42.1
Q ss_pred CCccccccccccccC-----CccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 77 PYEFRCPISGEIMTD-----PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~-----p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
..+..|+||.+.|.. |..++|||.||..|+..|++. ..+||.||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 446789999999988 788999999999999999996 668999999443
No 98
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.0017 Score=62.83 Aligned_cols=257 Identities=15% Similarity=0.177 Sum_probs=175.4
Q ss_pred HHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch------h----hhhhhcCCC
Q 012677 187 AAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE------N----KRLVAENPL 256 (458)
Q Consensus 187 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~------~----~~~i~~~~~ 256 (458)
.+..+..++. -|..-..+++ .++++.|+.+|... ++++....+..|..|+-.+- . ...+++ |+
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lve-ln~V~slL~LLgHe----NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~ 176 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVE-LNAVQSLLELLGHE----NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQ 176 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHH-hccHHHHHHHhcCC----CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-cc
Confidence 4555555665 4666667778 89999999999974 78888888888888864321 2 234444 46
Q ss_pred CHHHHHHHHhcCCHHH------HHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcC--ChHHHHHHHHHHHHhccc
Q 012677 257 AIPLLIDSVRTGTIET------RRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEG--HPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~------~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~ 327 (458)
+++.|++-+..=+..+ ..++.+.+-|+...+ +.+..+++.|.+.-|+.-+... -...+.+|...|.-+-.+
T Consensus 177 vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~ 256 (536)
T KOG2734|consen 177 VLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN 256 (536)
T ss_pred HHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc
Confidence 8898888776544333 444556677776555 4477777787666666533332 334567788888877665
Q ss_pred cc-chhHHHhhCcHHHHHHHhc-----cC------CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHH
Q 012677 328 LE-NKRRAVHAGAVRVILRKIM-----EN------SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNK 395 (458)
Q Consensus 328 ~~-~~~~i~~~g~v~~Lv~ll~-----~~------~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 395 (458)
.. ++.....-.++..|++-+. ++ ..-+.....|+.+...+.+|..++...++....-+++. . ...+
T Consensus 257 s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-K-k~sr 334 (536)
T KOG2734|consen 257 SDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-K-KVSR 334 (536)
T ss_pred CchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-H-HHhh
Confidence 54 7777777899999998875 32 24455677777777799999999998888877777774 3 6778
Q ss_pred hHHHHHHHHHhccCc--hhHHHHHHhhhhhHHHHHHhhhCC---------HHHHHHHHHHHHHHHhhH
Q 012677 396 ENCAAILYNICFTDR--TRTREIMEEENANGTLSRLAENGT---------SRAKRKANGILERLNKAA 452 (458)
Q Consensus 396 ~~a~~~L~~L~~~~~--~~~~~~~~~~g~~~~L~~ll~~~~---------~~~~~~A~~~L~~l~~~~ 452 (458)
..++++|..+..+++ ..+.++++..|.-..+-..++.++ ...-++...+|+.+-++.
T Consensus 335 ~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 335 GSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 889999999998877 556677775543333333343222 235677777887776654
No 99
>PTZ00429 beta-adaptin; Provisional
Probab=97.98 E-value=0.0029 Score=67.55 Aligned_cols=254 Identities=14% Similarity=0.068 Sum_probs=161.9
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
+...|+.+. .+.+.++-....|.+++..+++.. + -++..|.+-+.+. ++.++..|+.+|.++-.
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--l----LaINtl~KDl~d~----Np~IRaLALRtLs~Ir~----- 134 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--L----LAVNTFLQDTTNS----SPVVRALAVRTMMCIRV----- 134 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--H----HHHHHHHHHcCCC----CHHHHHHHHHHHHcCCc-----
Confidence 344555553 445566656666666665444332 1 1245556555553 88999999999877653
Q ss_pred hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc
Q 012677 249 RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 328 (458)
..+++. +++.+.+.|.+.++-+|+.|+-++..+-..+. ..+.+.|.++.|..+|.+.++.+..+|+.+|..+....
T Consensus 135 ~~i~e~--l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 135 SSVLEY--TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 223332 56667888889999999999999999865443 34455788999999999999999999999999997655
Q ss_pred cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHh
Q 012677 329 ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNIC 406 (458)
Q Consensus 329 ~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 406 (458)
...- -...+.+..|+..+.+. ..+-..+.+|.... |...... ...+..+...|++. ++.+.-.|++++.++.
T Consensus 211 ~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 211 SEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLA 284 (746)
T ss_pred chhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhc
Confidence 4322 23345667777777543 34556666664432 2211111 13456667777754 5899999999999988
Q ss_pred ccCc-hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 407 FTDR-TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 407 ~~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.... .....+.. ....+++.| .++++.++--+..-|..+...
T Consensus 285 ~~~~~~~~~~~~~--rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 285 SRCSQELIERCTV--RVNTALLTL-SRRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred CcCCHHHHHHHHH--HHHHHHHHh-hCCCccHHHHHHHHHHHHHHH
Confidence 6532 22222221 123556665 345667777777666555543
No 100
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.97 E-value=2.5e-06 Score=72.53 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=41.1
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.|.|.||...++.||++.|||.||..|..+-++.+ ..|-+|++...-
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhcc
Confidence 48999999999999999999999999988877754 579999987643
No 101
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=4e-06 Score=76.40 Aligned_cols=47 Identities=26% Similarity=0.313 Sum_probs=42.5
Q ss_pred ccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 81 RCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.|+||+..+.-||.++|+|-||.-||.--...+..+||+||.+++.+
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 59999999999999999999999999887665667899999999875
No 102
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.90 E-value=0.0014 Score=65.31 Aligned_cols=147 Identities=14% Similarity=0.008 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhC
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAG 338 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g 338 (458)
+.+..+|++.++.++..|+.+|..+- ...+++.|...+.+.++.++..|+.+|..+-. ..
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~ 209 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RL 209 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------Hh
Confidence 44555555555566666555555432 22344555555555566666666666543311 12
Q ss_pred cHHHHHHHhcc-CCcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHH
Q 012677 339 AVRVILRKIME-NSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIM 417 (458)
Q Consensus 339 ~v~~Lv~ll~~-~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 417 (458)
++..+..+... +..+...+.++..+...+ .+++.|..++++ +.++..++.+|..+..
T Consensus 210 A~~~l~~~~~~~g~~~~~~l~~~lal~~~~---------~a~~~L~~ll~d---~~vr~~a~~AlG~lg~---------- 267 (410)
T TIGR02270 210 AWGVCRRFQVLEGGPHRQRLLVLLAVAGGP---------DAQAWLRELLQA---AATRREALRAVGLVGD---------- 267 (410)
T ss_pred HHHHHHHHHhccCccHHHHHHHHHHhCCch---------hHHHHHHHHhcC---hhhHHHHHHHHHHcCC----------
Confidence 33344442222 222223222222222222 345666666663 3477777777765433
Q ss_pred HhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 418 EEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 418 ~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
..+++.|+.++.+ +.+.+.|..++..|...
T Consensus 268 --p~av~~L~~~l~d--~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 268 --VEAAPWCLEAMRE--PPWARLAGEAFSLITGM 297 (410)
T ss_pred --cchHHHHHHHhcC--cHHHHHHHHHHHHhhCC
Confidence 2245666666654 34888888888888764
No 103
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.89 E-value=0.0003 Score=68.35 Aligned_cols=233 Identities=17% Similarity=0.113 Sum_probs=159.2
Q ss_pred hhhhhhHHhhc-CCc--HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 168 SHLNSLLEKMS-SSL--SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.+..|++++. .+. .+|.++...|..... ..|+..++. .| ...++.+-+.. ..++.+...+.+|.++-+|
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~-~~-~~~Il~lAK~~---e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVAR-IG-LGVILNLAKER---EPVELARSVAGILEHMFKH 252 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhh-cc-chhhhhhhhhc---CcHHHHHHHHHHHHHHhhh
Confidence 46778888884 443 458888888877664 567888877 44 55555554442 3678888999999999998
Q ss_pred ch-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC--cchhHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 245 DE-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD--SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
++ ....++..| ++..++--.+..++++..+++-+|.|.+.+. +.+..|++..+-+-|..+-.+.+.-.+..|+-+.
T Consensus 253 Seet~~~Lvaa~-~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 253 SEETCQRLVAAG-GLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hHHHHHHHHhhc-ccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 76 456677775 7777776677778999999999999998764 5677888877777777777677778889999999
Q ss_pred HHhcccccchhHHHhhC---cHHHHHHHhc----------------------------cCCcHHHHHHHHHHhcC----C
Q 012677 322 FSLCILLENKRRAVHAG---AVRVILRKIM----------------------------ENSLVDELLAILAMLSS----H 366 (458)
Q Consensus 322 ~~L~~~~~~~~~i~~~g---~v~~Lv~ll~----------------------------~~~~~~~a~~~L~~La~----~ 366 (458)
..|+...+.-..+-..| .+++|+..+. +......++.+++-.+. .
T Consensus 332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs 411 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS 411 (832)
T ss_pred hhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH
Confidence 99988877555444443 3444444432 22223345555443322 3
Q ss_pred HHHHHHH-HhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 367 QDAIEEI-GELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 367 ~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
..++..+ -+-|+|+.|-++..+ .++....-|-.+|..|...-
T Consensus 412 ~Q~K~kVFseIGAIQaLKevaSS-~d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 412 LQGKTKVFSEIGAIQALKEVASS-PDEVAAKFASEALTVIGEEV 454 (832)
T ss_pred hccchhHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHhcccc
Confidence 3444444 567899999888884 33555566777777765543
No 104
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=1e-05 Score=72.79 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=42.0
Q ss_pred CCCccccccccccccCCccC-CCcccccHHHHHHHHh-cCCCCCCCCCccCC
Q 012677 76 LPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLD-EGNRTCPQTRQVLS 125 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~-~~~~~CP~c~~~l~ 125 (458)
-...-+||+|++....|.+. +|||.||..||..-+. ...++||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34567799999999999887 6999999999988765 33679999998765
No 105
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00037 Score=64.43 Aligned_cols=234 Identities=14% Similarity=0.101 Sum_probs=153.4
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhH
Q 012677 213 PLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLI 292 (458)
Q Consensus 213 ~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 292 (458)
..|+.+|.+. ++.++..|+..|.+++.. ..+.........++.+.+++..... .+.|+.+|.|++....-++.
T Consensus 6 ~elv~ll~~~----sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 6 VELVELLHSL----SPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred HHHHHHhccC----ChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHH
Confidence 3467777775 889999999999998876 4444444333466777788776655 77889999999999888888
Q ss_pred hhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHh--h----CcHHHHHHHh-ccC-C---cHHHHHHHHH
Q 012677 293 IGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVH--A----GAVRVILRKI-MEN-S---LVDELLAILA 361 (458)
Q Consensus 293 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~--~----g~v~~Lv~ll-~~~-~---~~~~a~~~L~ 361 (458)
+.+. .+..++.++.++....-..++.+|.||+..++....+.. . .++..++... ..+ . --...+.++.
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 8887 888888888887566777889999999998876555322 1 2333333333 333 1 1244778899
Q ss_pred HhcCCHHHHHHHHhcCCH--HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHH-hhhhhHHHH-----------
Q 012677 362 MLSSHQDAIEEIGELGAI--PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIME-EENANGTLS----------- 427 (458)
Q Consensus 362 ~La~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~~g~~~~L~----------- 427 (458)
||+..+.+|..+.+...+ ..|+.+-. .++.--+...+++|.|.|...... ..++. ....++.+.
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccccCH
Confidence 999999999999876632 22222222 232334557788999988876543 12222 111222211
Q ss_pred ----------HHhh-----hCCHHHHHHHHHHHHHHHhhHhhhh
Q 012677 428 ----------RLAE-----NGTSRAKRKANGILERLNKAALIVH 456 (458)
Q Consensus 428 ----------~ll~-----~~~~~~~~~A~~~L~~l~~~~~~~~ 456 (458)
..+- ..++.++..-..+|-.||....+++
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe 279 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGRE 279 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHH
Confidence 1111 2356678888888888887666654
No 106
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.84 E-value=0.0015 Score=62.98 Aligned_cols=223 Identities=14% Similarity=0.115 Sum_probs=158.7
Q ss_pred CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCH
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAI 258 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i 258 (458)
.+.....-++..|..+.+ -+++|..+.. ++++..|+..+.++ -.+-.+|-..+.++--|+.++.....+ ...+.+
T Consensus 169 ~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~-adg~~~l~~~l~s~--~~~~QlQYqsifciWlLtFn~~~ae~~-~~~~li 243 (442)
T KOG2759|consen 169 TNNDYIQFAARCLQTLLR-VDEYRYAFVI-ADGVSLLIRILAST--KCGFQLQYQSIFCIWLLTFNPHAAEKL-KRFDLI 243 (442)
T ss_pred CCCchHHHHHHHHHHHhc-Ccchhheeee-cCcchhhHHHHhcc--CcchhHHHHHHHHHHHhhcCHHHHHHH-hhccHH
Confidence 345666778889998887 4889999999 89999999988522 136688888999999999888877666 556799
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhhccCc---ch----hHhhccCchHHHHHHhhcC---ChHHHHHHH-------HH
Q 012677 259 PLLIDSVRTG-TIETRRNAAAALFSLSALDS---NK----LIIGKLGAMTPLIDLLEEG---HPLAMKDVA-------SA 320 (458)
Q Consensus 259 ~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~---~~----~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~-------~a 320 (458)
+.|.++++.. ...+.+-.++++.|+....+ .+ ..++.. .++.-++.|... |+++....- ..
T Consensus 244 ~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~s 322 (442)
T KOG2759|consen 244 QDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNS 322 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999876 45677888899999976552 12 233334 466666666543 444332211 11
Q ss_pred HHHhcccc------------------------cchhHHHhh--CcHHHHHHHhccC---CcHHHHHHHHHHhcC-CHHHH
Q 012677 321 IFSLCILL------------------------ENKRRAVHA--GAVRVILRKIMEN---SLVDELLAILAMLSS-HQDAI 370 (458)
Q Consensus 321 L~~L~~~~------------------------~~~~~i~~~--g~v~~Lv~ll~~~---~~~~~a~~~L~~La~-~~~~~ 370 (458)
...|++.+ +|...+-+. ..+..|+.+|... .+...|+.=+..... .|+++
T Consensus 323 vq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk 402 (442)
T KOG2759|consen 323 VQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGK 402 (442)
T ss_pred HHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHh
Confidence 22233321 233344443 5788899999744 345556666677776 89999
Q ss_pred HHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 371 EEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 371 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
..+.+.||=..+.++|.+. +++++-+|+.|+..|-.+
T Consensus 403 ~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 403 AVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHhh
Confidence 9999999999999999965 599999999999887653
No 107
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.83 E-value=0.0044 Score=61.00 Aligned_cols=268 Identities=14% Similarity=0.111 Sum_probs=177.8
Q ss_pred hhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCC
Q 012677 176 KMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENP 255 (458)
Q Consensus 176 ~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~ 255 (458)
.|+++.++|..+...++.+..+ +..-..+.+ .+.--.++.-|.... .+...+++|++.++.+.....+...+ ..
T Consensus 34 lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~-l~id~~ii~SL~~~~--~~~~ER~QALkliR~~l~~~~~~~~~-~~- 107 (371)
T PF14664_consen 34 LLSDSKEVRAAGYRILRYLISD-EESLQILLK-LHIDIFIIRSLDRDN--KNDVEREQALKLIRAFLEIKKGPKEI-PR- 107 (371)
T ss_pred HCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHH-cCCchhhHhhhcccC--CChHHHHHHHHHHHHHHHhcCCcccC-CH-
Confidence 4466677888888888888775 555555655 455445555555431 24577889999988876554433333 22
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHH
Q 012677 256 LAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV 335 (458)
Q Consensus 256 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 335 (458)
|++..++.+..+.+...+..|..+|..|+..+ -+.+...||+..|++.+-++..+..+..+.++.++-.++..|.-+.
T Consensus 108 ~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~ 185 (371)
T PF14664_consen 108 GVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR 185 (371)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence 48889999999999999999999999998753 4566779999999999888877788899999999998888777544
Q ss_pred hhCcHHHHHHHhccC--------C---cHHHHHHHHHHhcCCHHHHHHHHhc--CCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 336 HAGAVRVILRKIMEN--------S---LVDELLAILAMLSSHQDAIEEIGEL--GAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~--------~---~~~~a~~~L~~La~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
..--++.++.-+.+. . .-..+..++..+-.+-.|--.+... .++..|+..|..+ +++++...+.++
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll 264 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLL 264 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 432334444333322 1 1223444555554444444333332 3577777777754 366777777776
Q ss_pred HHHhccCc----------------hh-----------------------------------HHHHHHhhhhhHHHHHHhh
Q 012677 403 YNICFTDR----------------TR-----------------------------------TREIMEEENANGTLSRLAE 431 (458)
Q Consensus 403 ~~L~~~~~----------------~~-----------------------------------~~~~~~~~g~~~~L~~ll~ 431 (458)
..+-.-.. +. .-.+..+.|.++.|+.+..
T Consensus 265 ~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~ 344 (371)
T PF14664_consen 265 FDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIE 344 (371)
T ss_pred HHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHh
Confidence 66521100 00 0112335889999999988
Q ss_pred hC-CHHHHHHHHHHHHHHHhhH
Q 012677 432 NG-TSRAKRKANGILERLNKAA 452 (458)
Q Consensus 432 ~~-~~~~~~~A~~~L~~l~~~~ 452 (458)
.. ++....+|..+|..+-+.+
T Consensus 345 ~~~d~~l~~KAtlLL~elL~la 366 (371)
T PF14664_consen 345 SSEDSSLSRKATLLLGELLHLA 366 (371)
T ss_pred cCCCchHHHHHHHHHHHHHHHH
Confidence 76 7789999999988776543
No 108
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=8.1e-06 Score=74.27 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=42.0
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
-.|.|-||...+.+||++.|||+||..|-...+.. ...|++|.+.+..
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG 287 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc
Confidence 35789999999999999999999999999888875 4579999987753
No 109
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=2.9e-05 Score=69.14 Aligned_cols=74 Identities=32% Similarity=0.451 Sum_probs=68.5
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCC
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGI 148 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 148 (458)
++|+.+.|.|..++|++||+.|.|-+|.+.-|.+++..-...-|++|.+++..++.||..++..|..|...|.+
T Consensus 207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 47888899999999999999999999999999999986556799999999999999999999999999998865
No 110
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0046 Score=65.86 Aligned_cols=243 Identities=15% Similarity=0.120 Sum_probs=163.7
Q ss_pred CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCH
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAI 258 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i 258 (458)
.++..+.-|+..+..++. +...-.-++. .|.+..|+.+|-+ -+..++.++..|-.|+.+.+.....++.|| +
T Consensus 1784 ~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~-~~vL~~LL~lLHS-----~PS~R~~vL~vLYAL~S~~~i~keA~~hg~-l 1855 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLATA-NKECVTDLAT-CNVLTTLLTLLHS-----QPSMRARVLDVLYALSSNGQIGKEALEHGG-L 1855 (2235)
T ss_pred CCchHHHHHHHHHHHHhc-ccHHHHHHHh-hhHHHHHHHHHhc-----ChHHHHHHHHHHHHHhcCcHHHHHHHhcCc-h
Confidence 456788889998888877 4556666777 7889999999986 578889999999999999888777788764 4
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHhhccCc-------------------------------------------------
Q 012677 259 PLLIDSVR-TGTIETRRNAAAALFSLSALDS------------------------------------------------- 288 (458)
Q Consensus 259 ~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~------------------------------------------------- 288 (458)
.-+..++- +.....|..|+..|..|..+.-
T Consensus 1856 ~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~ 1935 (2235)
T KOG1789|consen 1856 MYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQ 1935 (2235)
T ss_pred hhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHH
Confidence 44555544 3456777777777777655320
Q ss_pred -----------------------------------------------chhHhhcc------------CchHHHHHHhhcC
Q 012677 289 -----------------------------------------------NKLIIGKL------------GAMTPLIDLLEEG 309 (458)
Q Consensus 289 -----------------------------------------------~~~~i~~~------------g~i~~Lv~lL~~~ 309 (458)
++..+... |.++.++.++...
T Consensus 1936 kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~ 2015 (2235)
T KOG1789|consen 1936 KVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRP 2015 (2235)
T ss_pred HHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCC
Confidence 00000000 0111112222221
Q ss_pred Ch--HHHHHHHHHHHHhcccccchhH-HHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHH
Q 012677 310 HP--LAMKDVASAIFSLCILLENKRR-AVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLR 384 (458)
Q Consensus 310 ~~--~~~~~a~~aL~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ 384 (458)
++ .....-..++..|...+.+-.. +-..|.+|.++..+... .+-..|+++|..|+.+.-..+++....++..++.
T Consensus 2016 ~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~ 2095 (2235)
T KOG1789|consen 2016 TPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMK 2095 (2235)
T ss_pred CcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHH
Confidence 11 1112222333344444443333 44469999999988644 5678899999999999999999998888888999
Q ss_pred HHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh
Q 012677 385 IIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE 431 (458)
Q Consensus 385 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~ 431 (458)
.|+.. ...-.-|+.+|-.+.....+...+-....|.++.|+.|+.
T Consensus 2096 ~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2096 SMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred HHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhc
Confidence 99853 5666689999988888665544444445799999999985
No 111
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=5.1e-06 Score=54.95 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=39.7
Q ss_pred cccccccccccCCccCCCcc-cccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 80 FRCPISGEIMTDPVVLANGQ-TFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh-~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
..|.||.+-..|-|.-.||| .+|..|-.+.++..+..||.||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 46999999999999889999 58999988877767789999998864
No 112
>PTZ00429 beta-adaptin; Provisional
Probab=97.72 E-value=0.0047 Score=65.99 Aligned_cols=247 Identities=12% Similarity=0.056 Sum_probs=157.5
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHH-HHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELR-LLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~-~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
+..|-..|. .+...+.+|++.+- .++.+ ... ....+-++.++.+. +.+++....-.|.+.+...+.
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv-------S~LF~dVvk~~~S~----d~elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV-------SYLFVDVVKLAPST----DLELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc-------hHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcccChH
Confidence 344555553 45667788888665 44443 222 23445566666664 788888887778788765443
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
...+ ++..+.+=+.++|+-+|-.|.++|.++-.. .+.+. .++++.+.+.+.++-+|+.|+.++..+...
T Consensus 102 lalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~e~-l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 102 KALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVLEY-TLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 3222 345577888889999999999998877431 22222 466777888888999999999999999765
Q ss_pred ccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHH
Q 012677 328 LENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNI 405 (458)
Q Consensus 328 ~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 405 (458)
... .+.+.|.++.|.++|.+. .+...|+.+|..+......+- -...+.+..|+..+... ++-.|...+.+|..
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~- 245 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPEC-NEWGQLYILELLAA- 245 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHh-
Confidence 442 334568889999999876 678999999999976321111 12233456666666543 36666666666643
Q ss_pred hccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 406 CFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
..+..-... ...+..+...+++.++.+.-.|++++-.+.
T Consensus 246 --y~P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 246 --QRPSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred --cCCCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 222111111 234455555566666667666666666554
No 113
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.65 E-value=0.0026 Score=58.44 Aligned_cols=185 Identities=15% Similarity=0.042 Sum_probs=117.3
Q ss_pred hcCCHHHHHHHHHHHHHhhccC---cchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcH
Q 012677 266 RTGTIETRRNAAAALFSLSALD---SNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAV 340 (458)
Q Consensus 266 ~~~~~~~~~~a~~~L~~Ls~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v 340 (458)
.+.+-+.|..|..-|..+.... +....+.+ ...+..++..+.+....+...|+.++..|+..-.....-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4457888999999998887655 33344433 356677777777777789999999999998766655544455688
Q ss_pred HHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc---hhHHH
Q 012677 341 RVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR---TRTRE 415 (458)
Q Consensus 341 ~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~ 415 (458)
|.|++.+.++ -+++.|..+|..++.+-..-..++ ++.+...+. +.++.++..++..|..+....+ .....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~-~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLK-SKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHh-CCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 9999999887 467888888888887433111111 234444455 4569999999999998876554 21111
Q ss_pred HHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 416 IMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 416 ~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
-..-...++.+.+.+.++++.+|+.|..+++.+.++.+.+
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 1101346778888889999999999999999999887764
No 114
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.64 E-value=0.00023 Score=54.60 Aligned_cols=84 Identities=24% Similarity=0.383 Sum_probs=67.1
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHh
Q 012677 258 IPLLIDSV-RTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVH 336 (458)
Q Consensus 258 i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~ 336 (458)
+|.|++.| ++++..+|..++.+|..+ ....+++.|+.+++++++.++..|+.+|..+- +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57889988 778999999999998833 23356999999999999999999999999872 4
Q ss_pred hCcHHHHHHHhccC---CcHHHHHHHHH
Q 012677 337 AGAVRVILRKIMEN---SLVDELLAILA 361 (458)
Q Consensus 337 ~g~v~~Lv~ll~~~---~~~~~a~~~L~ 361 (458)
..+++.|.+++.++ .++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 55899999999875 24666777663
No 115
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.8e-05 Score=74.41 Aligned_cols=51 Identities=24% Similarity=0.457 Sum_probs=39.8
Q ss_pred CCCcccccccccccc------C-----------CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMT------D-----------PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~------~-----------p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
....-.|+||+.... | =+.+||.|.|++.|+.+|.....-.||+||.+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 556677999997542 1 12459999999999999998545589999999863
No 116
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.024 Score=53.16 Aligned_cols=235 Identities=11% Similarity=0.097 Sum_probs=141.9
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChH--HHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIP--LLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~--~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.++.++..+. ++.++-..|.+.|..++.- +.-...+.+ ..... .+.++-... +.-.+...+..+..+..-
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf-paaleaiFe-SellDdlhlrnlaakc----ndiaRvRVleLIieifSi 201 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFE-SELLDDLHLRNLAAKC----NDIARVRVLELIIEIFSI 201 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcc-cccCChHHHhHHHhhh----hhHHHHHHHHHHHHHHhc
Confidence 45666777664 5677778888999888874 444444444 22221 122221111 234444555555555444
Q ss_pred ch-hhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC--ChHHHHHHHHH
Q 012677 245 DE-NKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG--HPLAMKDVASA 320 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~a 320 (458)
++ ....... .|.+..|..=|+. .+.-++.++......|+..+..++.+.+.|.|..+..++... +|--+-.++..
T Consensus 202 Spesaneckk-SGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmg 280 (524)
T KOG4413|consen 202 SPESANECKK-SGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMG 280 (524)
T ss_pred CHHHHhHhhh-hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHH
Confidence 33 3333334 4577766555544 466678888899999999999999999999999999988643 44443334433
Q ss_pred HHH----hcccccchhHHHhh--CcHHHHHHHhc--cCCcHHHHHHHHHHhcCCHHHHHHHHhcCC--HHHHHHHHhhcC
Q 012677 321 IFS----LCILLENKRRAVHA--GAVRVILRKIM--ENSLVDELLAILAMLSSHQDAIEEIGELGA--IPCLLRIIREST 390 (458)
Q Consensus 321 L~~----L~~~~~~~~~i~~~--g~v~~Lv~ll~--~~~~~~~a~~~L~~La~~~~~~~~i~~~g~--i~~Lv~ll~~~~ 390 (458)
... .+.-+-.-.+++++ -+|..-.+++. +++.++.|+.++..|-++.++++.+.+.|- ...++.-..+.+
T Consensus 281 fgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn 360 (524)
T KOG4413|consen 281 FGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN 360 (524)
T ss_pred HHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc
Confidence 222 22222122222222 22333333333 447899999999999999999999999883 444443333333
Q ss_pred ChhHHhHHHHHHHHHhccC
Q 012677 391 CERNKENCAAILYNICFTD 409 (458)
Q Consensus 391 ~~~~~~~a~~~L~~L~~~~ 409 (458)
-..-++.++.+|.+++..-
T Consensus 361 ahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 361 AHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred ccchHHHHHHHHHHhhccc
Confidence 3455788889999988643
No 117
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0019 Score=65.51 Aligned_cols=270 Identities=16% Similarity=0.093 Sum_probs=174.5
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhh---ccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGE---STDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI 243 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~ 243 (458)
+.++.|.+.|. .+...+.-|..+|..++.++.+.-..-.. -.-.+|.++.+.+.. ++.++..|+..+-..-.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~----spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP----SPKIRSHAVGCVNQFII 203 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC----ChhHHHHHHhhhhheee
Confidence 46888888885 44566778899999988876554322110 013578889988875 88999999988765443
Q ss_pred CchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 244 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
... ...+..-...++.+..+-...++++|++.|.+|..|-.....+-.=-=.++|+.++..-++.+..+...|+.-...
T Consensus 204 ~~~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 204 IQT-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred cCc-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 322 2222222236666766666779999999999999886544333222226788899988888899999999999999
Q ss_pred hcccccchhHHHh--hCcHHHHHHHhccC---------------------------------------------------
Q 012677 324 LCILLENKRRAVH--AGAVRVILRKIMEN--------------------------------------------------- 350 (458)
Q Consensus 324 L~~~~~~~~~i~~--~g~v~~Lv~ll~~~--------------------------------------------------- 350 (458)
++..+-.+..+.. ...+|.|++-|.-.
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 9988844444433 26777777644210
Q ss_pred -------CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhh---cCChhHHhHHHHHHHHHhccCchhHHHHHHh-
Q 012677 351 -------SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRE---STCERNKENCAAILYNICFTDRTRTREIMEE- 419 (458)
Q Consensus 351 -------~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~- 419 (458)
.+++-++++|--|+. +.....++.+.-+|+. ++.=.++|.++-+|..++.+--. -++..
T Consensus 363 dD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~L 432 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPHL 432 (885)
T ss_pred ccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccch
Confidence 011222222222221 1222234444444432 23468899999999999876522 22211
Q ss_pred hhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 420 ENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 420 ~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
...++.|+.++.+..+-++.-.+|.|.+.+..-
T Consensus 433 peLip~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 433 PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHHHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 235777888888888999999999998887653
No 118
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0047 Score=57.77 Aligned_cols=240 Identities=15% Similarity=0.110 Sum_probs=162.6
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-h---hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-N---KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL 286 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~---~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 286 (458)
.++.+...|+.+....+..++..+++.++.+..+.+ | -...+-+.++.+.++..+...+.++-..|...|..++..
T Consensus 79 lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 79 LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF 158 (524)
T ss_pred hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 344444444444333477788888888777766554 2 223333456999999999999999999999999999999
Q ss_pred CcchhHhhccCchHHH--HHHhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC---CcHHHHHHHH
Q 012677 287 DSNKLIIGKLGAMTPL--IDLLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN---SLVDELLAIL 360 (458)
Q Consensus 287 ~~~~~~i~~~g~i~~L--v~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L 360 (458)
++.-+.|.+......+ +.+-...+.-++......+..+.+... .....-..|.+..|..-|... -+...++...
T Consensus 159 paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElv 238 (524)
T KOG4413|consen 159 PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV 238 (524)
T ss_pred HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence 9999999887666654 333334456677778888887766443 444455578888888888753 4678899999
Q ss_pred HHhcCCHHHHHHHHhcCCHHHHHHHHhhcC-ChhHHhHHHHHHHHHhc----cCchhHHHHHH-hhhhhHHHHHHhhhCC
Q 012677 361 AMLSSHQDAIEEIGELGAIPCLLRIIREST-CERNKENCAAILYNICF----TDRTRTREIME-EENANGTLSRLAENGT 434 (458)
Q Consensus 361 ~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~----~~~~~~~~~~~-~~g~~~~L~~ll~~~~ 434 (458)
..|+..+-+++.+...|.|+.+-.++...+ ++--+-.++.....+-. ..-.. .++.+ -.-+++-..+++...+
T Consensus 239 teLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvse-eaicealiiaidgsfEmiEmnD 317 (524)
T KOG4413|consen 239 TELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSE-EAICEALIIAIDGSFEMIEMND 317 (524)
T ss_pred HHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCH-HHHHHHHHHHHHhhHHhhhcCC
Confidence 999999999999999999999999997432 23333334433332221 11000 01111 1234555666777778
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012677 435 SRAKRKANGILERLNKA 451 (458)
Q Consensus 435 ~~~~~~A~~~L~~l~~~ 451 (458)
+.+.+.|..++..|...
T Consensus 318 pdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 318 PDAIEAAIDALGILGSN 334 (524)
T ss_pred chHHHHHHHHHHhccCC
Confidence 88899988888877643
No 119
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.54 E-value=0.0088 Score=60.62 Aligned_cols=263 Identities=14% Similarity=0.174 Sum_probs=166.0
Q ss_pred HHHHHHHHhhCchhhhhhhhccCChHHHhhcc--C----CCCCCCChhHHHHHHHHHHhcccCch-hhhhhhcCCCCHHH
Q 012677 188 AKELRLLTKRMPLFRALFGESTDAIPLLLSPL--S----PGRADTDPGLLEDLITTILNLSIHDE-NKRLVAENPLAIPL 260 (458)
Q Consensus 188 ~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL--~----~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~~i~~ 260 (458)
+..|+.++++ +.....+.. ..++..|..+- . ......+..+...|+++|.|+-.+.+ .|..+++. |..+.
T Consensus 2 L~~LRiLsRd-~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~-~~~~~ 78 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDL-GLAEK 78 (446)
T ss_pred HHHHHHHccC-cccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHc-CcHHH
Confidence 4455556653 444445544 45566665554 0 01122478999999999999987766 45566665 58888
Q ss_pred HHHHHhcC-----CHHHHHHHHHHHHHhhcc-CcchhHhhc-cCchHHHHHHhhc-----------------CChHHHHH
Q 012677 261 LIDSVRTG-----TIETRRNAAAALFSLSAL-DSNKLIIGK-LGAMTPLIDLLEE-----------------GHPLAMKD 316 (458)
Q Consensus 261 Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~-~~~~~~i~~-~g~i~~Lv~lL~~-----------------~~~~~~~~ 316 (458)
++..|+.. +.++.-...++|+-++.. .+.+..+++ .+++..|+..|.. .+......
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 99999886 788888888988877653 355666665 6888888876632 02345678
Q ss_pred HHHHHHHhcccccchhHHHhhCcHHHHHHHhc-------cC----CcHHHHHHHHHHhcCC-HHH-------HHHH----
Q 012677 317 VASAIFSLCILLENKRRAVHAGAVRVILRKIM-------EN----SLVDELLAILAMLSSH-QDA-------IEEI---- 373 (458)
Q Consensus 317 a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~-------~~----~~~~~a~~~L~~La~~-~~~-------~~~i---- 373 (458)
++.+++|+..+......--..+.++.|+.++. .+ .....++.+|.++-.. ... ...+
T Consensus 159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence 89999999876654433223345555555543 11 3567788888877331 111 1111
Q ss_pred HhcCCHHHHHHHHhhc----C---ChhHHhHHHHHHHHHhccCchhHHHHHHh----------------hhhhHHHHHHh
Q 012677 374 GELGAIPCLLRIIRES----T---CERNKENCAAILYNICFTDRTRTREIMEE----------------ENANGTLSRLA 430 (458)
Q Consensus 374 ~~~g~i~~Lv~ll~~~----~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~----------------~g~~~~L~~ll 430 (458)
.....+..|+.+|... . -+..-.--+.+|..++..+. ..++.++. ...-..|++|+
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~-~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLm 317 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR-EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLM 317 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH-HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHh
Confidence 1112477777777531 1 12344556677777777654 23454442 23445688888
Q ss_pred hhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 431 ENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 431 ~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
.+..+.++..++..|+.||+.+..
T Consensus 318 t~~~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 318 TSPDPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred CCCCchHHHHHHHHHHHHHhhhHH
Confidence 887799999999999999976543
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.52 E-value=0.00032 Score=53.80 Aligned_cols=85 Identities=20% Similarity=0.332 Sum_probs=67.7
Q ss_pred hHHHHHHh-hcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHh
Q 012677 299 MTPLIDLL-EEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGE 375 (458)
Q Consensus 299 i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~ 375 (458)
|+.|++.| +++++.++..++.+|.++- +..+++.|++++.++ .++..|+.+|..+- +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 68899988 7779999999999999541 235799999999877 57888999988772 3
Q ss_pred cCCHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 376 LGAIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 376 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
..+++.|.+++.++.+..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4479999999997665677899988874
No 121
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.49 E-value=0.00017 Score=46.43 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=36.2
Q ss_pred CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 287 DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 287 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
++++..+.+.|+|++|+.+|.+++++++..++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3478888999999999999998899999999999999973
No 122
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.48 E-value=4.7e-05 Score=73.23 Aligned_cols=47 Identities=28% Similarity=0.596 Sum_probs=38.5
Q ss_pred CCCccccccccccccCCc----cCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 76 LPYEFRCPISGEIMTDPV----VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~----~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
+.+--+||+|++-|-+-+ .+.|.|+|+-.|+..|+.. +||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 344558999999997655 3479999999999999963 7999997765
No 123
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=2.8e-05 Score=69.60 Aligned_cols=55 Identities=24% Similarity=0.537 Sum_probs=41.2
Q ss_pred CccccccccccccCCc----------cCCCcccccHHHHHHHHhcC-CCCCCCCCccCCCCCCccc
Q 012677 78 YEFRCPISGEIMTDPV----------VLANGQTFDRPCIQRWLDEG-NRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~----------~l~cgh~fc~~ci~~~~~~~-~~~CP~c~~~l~~~~~~~n 132 (458)
++..|.+|.+-+.+-+ .+.|+|.|+..||.-|.--| .++||.|+..+....+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 4556999997664433 57999999999999998655 4599999988765443333
No 124
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.38 E-value=0.011 Score=59.96 Aligned_cols=233 Identities=15% Similarity=0.158 Sum_probs=157.0
Q ss_pred CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCC-CChhHHHHHHHHHHhccc-CchhhhhhhcCCC
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRAD-TDPGLLEDLITTILNLSI-HDENKRLVAENPL 256 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~ 256 (458)
.+.....+|+++|.|..-.++..|..+.+ .|..+.++..|+..... .+.++.--...+|+-++. ..+.+..+++..+
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~-~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVD-LGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 34677889999999999999999999999 89999999999875221 255777777888876664 4557777777666
Q ss_pred CHHHHHHHHhc-----------------CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc---------CC
Q 012677 257 AIPLLIDSVRT-----------------GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE---------GH 310 (458)
Q Consensus 257 ~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~---------~~ 310 (458)
++..|+..|.. .+......+..+++|+..+......-...+.++.|+.++.. +.
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 78877776531 12345667788899997755433321225566777666532 13
Q ss_pred hHHHHHHHHHHHHhccccc-c-------hh----HHHhhCcHHHHHHHhccC-------C---cHHHHHHHHHHhcCC-H
Q 012677 311 PLAMKDVASAIFSLCILLE-N-------KR----RAVHAGAVRVILRKIMEN-------S---LVDELLAILAMLSSH-Q 367 (458)
Q Consensus 311 ~~~~~~a~~aL~~L~~~~~-~-------~~----~i~~~g~v~~Lv~ll~~~-------~---~~~~a~~~L~~La~~-~ 367 (458)
......+..+|.|+-.... . .. .......+..|+++|... . ...-.+.+|.+++.. .
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 3566778888888732111 0 11 112335677788877532 2 234467777777774 5
Q ss_pred HHHHHHHhc----------------CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhH
Q 012677 368 DAIEEIGEL----------------GAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRT 413 (458)
Q Consensus 368 ~~~~~i~~~----------------g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 413 (458)
..|+.+... ..-..|++++.+.. ..++..+...|+.||..+.++.
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~-~~~k~~vaellf~Lc~~d~~~~ 343 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD-PQLKDAVAELLFVLCKEDASRF 343 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC-chHHHHHHHHHHHHHhhhHHHH
Confidence 556555331 24677889998765 9999999999999999876543
No 125
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.37 E-value=0.00042 Score=44.56 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 367 QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 367 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
++++..+++.|+++.|+++|..+ +++++..++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 45888999999999999999954 59999999999999974
No 126
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0051 Score=65.50 Aligned_cols=138 Identities=19% Similarity=0.203 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhhccCc-chhHhhc----cCchHHHHHHhhc-CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHH
Q 012677 271 ETRRNAAAALFSLSALDS-NKLIIGK----LGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVIL 344 (458)
Q Consensus 271 ~~~~~a~~~L~~Ls~~~~-~~~~i~~----~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv 344 (458)
+-...+..+|.|+..... -....+. -|-++.+...++. +++++++-|+.++..+....+....+++.|++..|+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence 345778889999876543 3433332 5778888888876 488999999999999999999888899999999999
Q ss_pred HHhccC-CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 345 RKIMEN-SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 345 ~ll~~~-~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
.+|.+- +.++.++.+|+.|+++++-..+..+.|++.-+..++-.+.++..+..|+..|..|...
T Consensus 1820 ~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1820 TLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 999876 7899999999999999999889999999999999888777788999999999998764
No 127
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.32 E-value=0.00019 Score=48.20 Aligned_cols=41 Identities=29% Similarity=0.690 Sum_probs=32.3
Q ss_pred ccccccc--cccCCccCCCc-----ccccHHHHHHHHhcC-CCCCCCCC
Q 012677 81 RCPISGE--IMTDPVVLANG-----QTFDRPCIQRWLDEG-NRTCPQTR 121 (458)
Q Consensus 81 ~C~ic~~--~~~~p~~l~cg-----h~fc~~ci~~~~~~~-~~~CP~c~ 121 (458)
.|-||++ .-.+|.+.||. |.+++.|+.+|+... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889987 44567778874 789999999999753 45899985
No 128
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00023 Score=66.29 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=42.0
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.++..||||..-..+.|..||||.-|+.||.+++- +.+.|-+|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecceeee
Confidence 35678999999888999999999999999999997 36689999876643
No 129
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00016 Score=66.86 Aligned_cols=55 Identities=29% Similarity=0.454 Sum_probs=46.2
Q ss_pred CCcCCCCCCccccccccccccCCccCC-CcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
++.....++.-.||+|..--.+|.++. .|..||..||..+.. .+.+||+++.+..
T Consensus 291 se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 291 SESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred cccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 444455677888999999999998875 799999999999999 4778999988764
No 130
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.024 Score=57.52 Aligned_cols=267 Identities=15% Similarity=0.091 Sum_probs=160.7
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+..++..++ .+...|+.....|..+........ . .-..+.+.++++.. +...+..|...+..+..+.-
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~----~-~~~l~~l~~ll~~~----~~~~~~~aa~~~ag~v~g~~- 166 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS----G-EYVLELLLELLTST----KIAERAGAAYGLAGLVNGLG- 166 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC----H-HHHHHHHHHHhccc----cHHHHhhhhHHHHHHHcCcH-
Confidence 4666777775 345666666666655443221111 0 12346666777754 66777788888877775532
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc---CChHHHHHHHHHHHHh
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE---GHPLAMKDVASAIFSL 324 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~aL~~L 324 (458)
...+.+. +++..|-..+.......+..+. +.+......+-....+.+.++.+..+|.+ ....+|..|..+...+
T Consensus 167 i~~~~~~-~~l~~l~~ai~dk~~~~~re~~--~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai 243 (569)
T KOG1242|consen 167 IESLKEF-GFLDNLSKAIIDKKSALNREAA--LLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAI 243 (569)
T ss_pred Hhhhhhh-hHHHHHHHHhcccchhhcHHHH--HHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHH
Confidence 2333333 4777777777766544444321 11111111222244556666666666643 4677888877777665
Q ss_pred ccccc-chhHHHhhCcHHHHHHHhccCC--cHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 325 CILLE-NKRRAVHAGAVRVILRKIMENS--LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 325 ~~~~~-~~~~i~~~g~v~~Lv~ll~~~~--~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
-..-. ...+ -.++.++.-+.+.. ....++..|..|+.+..-+-...-...||.|.+.|.+.. +++++.+..+
T Consensus 244 ~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~-~evr~a~~~~ 318 (569)
T KOG1242|consen 244 MRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTK-PEVRKAGIET 318 (569)
T ss_pred HHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCC-HHHHHHHHHH
Confidence 33221 1111 13344444443333 455688999999887777777777888999999999877 9999999999
Q ss_pred HHHHhccCchh-HHHHH----H-------------------------hhhhhHHHHHHhhhC----CHHHHHHHHHHHHH
Q 012677 402 LYNICFTDRTR-TREIM----E-------------------------EENANGTLSRLAENG----TSRAKRKANGILER 447 (458)
Q Consensus 402 L~~L~~~~~~~-~~~~~----~-------------------------~~g~~~~L~~ll~~~----~~~~~~~A~~~L~~ 447 (458)
|..++..-.+. ...++ . ++-.+..++-+++++ +..++++++.+++|
T Consensus 319 l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidN 398 (569)
T KOG1242|consen 319 LLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDN 398 (569)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHH
Confidence 99988754421 11111 1 122344455566554 55789999999999
Q ss_pred HHhhHh
Q 012677 448 LNKAAL 453 (458)
Q Consensus 448 l~~~~~ 453 (458)
+|+..+
T Consensus 399 m~~Lve 404 (569)
T KOG1242|consen 399 MCKLVE 404 (569)
T ss_pred HHHhhc
Confidence 999873
No 131
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.021 Score=57.23 Aligned_cols=263 Identities=11% Similarity=0.093 Sum_probs=166.1
Q ss_pred CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHH
Q 012677 180 SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIP 259 (458)
Q Consensus 180 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~ 259 (458)
++..|.--+.=|..+-.- | ..+.+.-.....+.|..+|++. +.+++..+-.+|.++-..=.+....++.+..++
T Consensus 180 n~~tR~flv~Wl~~Lds~-P-~~~m~~yl~~~ldGLf~~LsD~----s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~ 253 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSV-P-DLEMISYLPSLLDGLFNMLSDS----SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMIN 253 (675)
T ss_pred CchHHHHHHHHHHHHhcC-C-cHHHHhcchHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHHHhcCccccCcccchh
Confidence 455555444444444332 2 1222222134567777888764 667776555555544332223334435556888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChH-HHHHHHH---HHHHhcccccchhHHH
Q 012677 260 LLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPL-AMKDVAS---AIFSLCILLENKRRAV 335 (458)
Q Consensus 260 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~a~~---aL~~L~~~~~~~~~i~ 335 (458)
.++.-+.++++.++.-|..-+..+...........-.|++..++.++.+..+. .+..+.. .|..+......... +
T Consensus 254 vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-i 332 (675)
T KOG0212|consen 254 VLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-I 332 (675)
T ss_pred hccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-c
Confidence 89999999999999999888888876554444444478888888888776543 3333222 34444444443433 4
Q ss_pred h-hCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchh
Q 012677 336 H-AGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTR 412 (458)
Q Consensus 336 ~-~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 412 (458)
+ ...+..|.+.+++. +.+-.++.-+..|-..-.++-..-.....+.|++-|.+. ++.+...++..|+++|......
T Consensus 333 d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 333 DYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSSNSP 411 (675)
T ss_pred chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCcccc
Confidence 4 34778888888876 456667766666655444444444556778888888865 5999999999999999866431
Q ss_pred HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 413 TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 413 ~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
.. -.++..|.++......-...++.-+++.||-.-+..
T Consensus 412 --~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE 449 (675)
T KOG0212|consen 412 --NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAE 449 (675)
T ss_pred --cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHH
Confidence 11 124445555555666668899999999999765543
No 132
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.29 E-value=5.3e-05 Score=55.25 Aligned_cols=47 Identities=28% Similarity=0.593 Sum_probs=23.2
Q ss_pred cccccccccccc-C---CccC----CCcccccHHHHHHHHhc--CC--------CCCCCCCccCC
Q 012677 79 EFRCPISGEIMT-D---PVVL----ANGQTFDRPCIQRWLDE--GN--------RTCPQTRQVLS 125 (458)
Q Consensus 79 ~~~C~ic~~~~~-~---p~~l----~cgh~fc~~ci~~~~~~--~~--------~~CP~c~~~l~ 125 (458)
+..|+||..... + |... .|++.||..|+.+||.. .. ..||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 456999998764 2 4443 59999999999999973 11 26999998875
No 133
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.27 E-value=0.0016 Score=50.99 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHh-hcCChhHHhHHHHHHHHHhccCchhHHHHHH
Q 012677 352 LVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIR-ESTCERNKENCAAILYNICFTDRTRTREIME 418 (458)
Q Consensus 352 ~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 418 (458)
++...+.+|.+|+. ++.++..+.+.|+++.++.... +.+++-+++.|+.++.+|+.+++.++ +++.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ-~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQ-EFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHH-HHHH
Confidence 46678999999998 8999999999999999998775 45679999999999999999998764 4444
No 134
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0049 Score=61.21 Aligned_cols=258 Identities=14% Similarity=0.093 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-chhhhhhhcCCCCHHHHHH
Q 012677 185 KEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DENKRLVAENPLAIPLLID 263 (458)
Q Consensus 185 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~~i~~Lv~ 263 (458)
..++..|..+++.-.-.|.-+.+ ..+++.|+++|+.+ +..+.--+...+.|+... ++-+..+...+ ++..|+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d-~~I~elLi~~Ls~P----eimi~~~~t~~icn~vv~fsnL~~~fL~~~-iIdvl~~ 480 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLD-YPIVELLIDALSNP----EIMIEFPDTIDICNKVVPFSNLGAGFLEKS-IIDVLVN 480 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccc-cchHHHHHHHhcCc----cceeeccchhhhhheeeeccchHHHHHHhh-HHHHHHH
Confidence 34556677777766667777788 88999999999874 455555677777777644 45567777774 9999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCcch--hHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-c---hhHHHhh
Q 012677 264 SVRTGTIETRRNAAAALFSLSALDSNK--LIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-N---KRRAVHA 337 (458)
Q Consensus 264 lL~~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~---~~~i~~~ 337 (458)
++.+.+..+|.+..|.|+.+..++++- -.....-++..++.+.++++-.+++..+..|.|+..+.. | +...+..
T Consensus 481 ~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~ 560 (743)
T COG5369 481 LVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKA 560 (743)
T ss_pred HhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEec
Confidence 999999999999999999998877653 334445568999999999999999999999999976332 2 2212221
Q ss_pred ---C-cHHHHHHHhccC--CcHHHHHHHHHHhcCCHHH-HHHHHhcC-CHHHHHHHHh----h-----------------
Q 012677 338 ---G-AVRVILRKIMEN--SLVDELLAILAMLSSHQDA-IEEIGELG-AIPCLLRIIR----E----------------- 388 (458)
Q Consensus 338 ---g-~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~-~~~i~~~g-~i~~Lv~ll~----~----------------- 388 (458)
. ....|++.++.. ......+-+|.+++..++. +..+.+.. .+..+-++|. +
T Consensus 561 ~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s 640 (743)
T COG5369 561 TPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPIS 640 (743)
T ss_pred ChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccc
Confidence 1 334444444433 2234446666666664444 33333322 2222222221 0
Q ss_pred -------------------------------cCChhHHhHHHHHHHHHhccCc---------hhHHHHHHhhhhhHHHHH
Q 012677 389 -------------------------------STCERNKENCAAILYNICFTDR---------TRTREIMEEENANGTLSR 428 (458)
Q Consensus 389 -------------------------------~~~~~~~~~a~~~L~~L~~~~~---------~~~~~~~~~~g~~~~L~~ 428 (458)
.++.+...+..|.+.|+..... +++ .++.+.|.-+.|++
T Consensus 641 ~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~-~iL~~~G~~e~l~k 719 (743)
T COG5369 641 YTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERI-QILCANGIREWLVK 719 (743)
T ss_pred eeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHH-HHHHHccHHHHHHH
Confidence 0112344455666666432111 233 34556888889999
Q ss_pred HhhhCCHHHHHHHHHHHHHHH
Q 012677 429 LAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 429 ll~~~~~~~~~~A~~~L~~l~ 449 (458)
+..+.++.+++++..+|.++.
T Consensus 720 ~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 720 IQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HhccCcHHHHHHHHHHHHhhh
Confidence 888899999999999998875
No 135
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.24 E-value=0.024 Score=56.60 Aligned_cols=116 Identities=16% Similarity=0.064 Sum_probs=56.8
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchh
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKL 291 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 291 (458)
+..|+..|.+. +..++..++.+|..+- . .+..+.|+.+|++.++.++..++.++..
T Consensus 88 ~~~L~~~L~d~----~~~vr~aaa~ALg~i~----------~-~~a~~~L~~~L~~~~p~vR~aal~al~~--------- 143 (410)
T TIGR02270 88 LRSVLAVLQAG----PEGLCAGIQAALGWLG----------G-RQAEPWLEPLLAASEPPGRAIGLAALGA--------- 143 (410)
T ss_pred HHHHHHHhcCC----CHHHHHHHHHHHhcCC----------c-hHHHHHHHHHhcCCChHHHHHHHHHHHh---------
Confidence 45555555542 4445555555553211 1 1244555556655555555555544443
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHh
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAML 363 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~L 363 (458)
......+.|..+|++.++.++..|+.+|..+- ....++.|...+.+. .++..|+..|..+
T Consensus 144 --r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 144 --HRHDPGPALEAALTHEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred --hccChHHHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 11123445555665556666666666665542 223444455555444 3455555555433
No 136
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0061 Score=62.03 Aligned_cols=231 Identities=14% Similarity=0.114 Sum_probs=153.5
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhh------hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKR------LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSL 283 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~------~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L 283 (458)
..+|.|.++|.+. +-..++.|..+|..++.+....- .-.. -.+|.++++.+++++.+|..|++.+-.+
T Consensus 128 elLp~L~~~L~s~----d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~--~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 128 ELLPQLCELLDSP----DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN--IMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred hHHHHHHHHhcCC----cccccchhHHHHHHHHhhhHHHHhhhcccCchH--HhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 4578899999875 66788899999988886654211 1122 3688999999999999999999887665
Q ss_pred hccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHH
Q 012677 284 SALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAIL 360 (458)
Q Consensus 284 s~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L 360 (458)
.... +...+.. ...++.|..+-.+.++++|++.+.+|..|-.....+..--=.++++.+++.-.+. ++.-.|+...
T Consensus 202 i~~~-~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 202 IIIQ-TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred eecC-cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 4433 2222333 4566777777777899999999999999976655444322247777777777765 6788899999
Q ss_pred HHhcCCHHHHHHHHhc--CCHHHHHHHH----------hhcCC-------------------------------------
Q 012677 361 AMLSSHQDAIEEIGEL--GAIPCLLRII----------RESTC------------------------------------- 391 (458)
Q Consensus 361 ~~La~~~~~~~~i~~~--g~i~~Lv~ll----------~~~~~------------------------------------- 391 (458)
..+|..+..+..+... ..||.|+.-| .+...
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 9999988666666443 4577776432 20000
Q ss_pred --------hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 392 --------ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 392 --------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
=.++.-++++|..|+...+. +++ .-..|.|-+.+.+..=.+|+.+..+|..+++-+
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL--~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc 424 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLANVFGD---ELL--PILLPLLKEHLSSEEWKVREAGVLALGAIAEGC 424 (885)
T ss_pred ccccccccccHhhccHHHHHHHHHhhHH---HHH--HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH
Confidence 02445556666666654433 222 234555555555555568888888888777644
No 137
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.23 E-value=0.018 Score=48.90 Aligned_cols=121 Identities=16% Similarity=0.173 Sum_probs=93.7
Q ss_pred hHhhccCchHHHHHHhhcCCh------HHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC----CcHHHHHHHH
Q 012677 291 LIIGKLGAMTPLIDLLEEGHP------LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN----SLVDELLAIL 360 (458)
Q Consensus 291 ~~i~~~g~i~~Lv~lL~~~~~------~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L 360 (458)
....+.||+..|++++.++.. +....++.++..|-.+.-.-=..++...|..++.++... .+...|+++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 345667889999999998763 677888999999888765222456667788888888744 5788999999
Q ss_pred HHhcCCHHHHHHH-HhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchh
Q 012677 361 AMLSSHQDAIEEI-GELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTR 412 (458)
Q Consensus 361 ~~La~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 412 (458)
.++..++...... .++=-++.|+.+|+.+ ++.++.+|+..+-.|-...++.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCChH
Confidence 9999966654444 4444699999999975 5999999999999988766544
No 138
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.20 E-value=0.02 Score=55.86 Aligned_cols=188 Identities=22% Similarity=0.231 Sum_probs=110.6
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
..+..++..+.+. +..++..|...+..+. .. ..++.+..++...+..+|..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~----~~~vr~~aa~~l~~~~----------~~-~av~~l~~~l~d~~~~vr~~a~~aLg~~------ 101 (335)
T COG1413 43 EAADELLKLLEDE----DLLVRLSAAVALGELG----------SE-EAVPLLRELLSDEDPRVRDAAADALGEL------ 101 (335)
T ss_pred hhHHHHHHHHcCC----CHHHHHHHHHHHhhhc----------hH-HHHHHHHHHhcCCCHHHHHHHHHHHHcc------
Confidence 3567777777763 6677777776643332 12 3678888888888888888888755543
Q ss_pred hhHhhccCchHHHHHHhh-cCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHH
Q 012677 290 KLIIGKLGAMTPLIDLLE-EGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQD 368 (458)
Q Consensus 290 ~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~ 368 (458)
....+++.|+.++. +++..++..++.+|..+- +..++.+|+..+.+..... +...+ ......
T Consensus 102 ----~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~-a~~~~--~~~~~~ 164 (335)
T COG1413 102 ----GDPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGS-AAAAL--DAALLD 164 (335)
T ss_pred ----CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhh-hhhhc--cchHHH
Confidence 33457888888888 478888888888888762 2234677777776653111 11111 000001
Q ss_pred HHHHH-------HhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHH
Q 012677 369 AIEEI-------GELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKA 441 (458)
Q Consensus 369 ~~~~i-------~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A 441 (458)
.|..+ .+.-.++.+..++.+.. ..++..|..+|..+.... ....+.+...+.+.+..++..+
T Consensus 165 ~r~~a~~~l~~~~~~~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 165 VRAAAAEALGELGDPEAIPLLIELLEDED-ADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHHHHHHHHcCChhhhHHHHHHHhCch-HHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHH
Confidence 11111 12235777777777543 678888888887776654 1223444444444444455444
Q ss_pred HHHHH
Q 012677 442 NGILE 446 (458)
Q Consensus 442 ~~~L~ 446 (458)
+..|.
T Consensus 234 ~~~l~ 238 (335)
T COG1413 234 LLALG 238 (335)
T ss_pred HHHhc
Confidence 44443
No 139
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.19 E-value=0.0037 Score=57.44 Aligned_cols=177 Identities=17% Similarity=0.125 Sum_probs=109.6
Q ss_pred CCcHHHHHHHHHHHHHHhhC--chhhhhhhh-ccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhh-hhhcC
Q 012677 179 SSLSDQKEAAKELRLLTKRM--PLFRALFGE-STDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKR-LVAEN 254 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~-~i~~~ 254 (458)
.+.+.|.+|+..|..+...+ ......+.+ ....+..+...+.+. ...+...|+.++..++..-...- .+++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~----Rs~v~~~A~~~l~~l~~~l~~~~~~~~~- 93 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL----RSKVSKTACQLLSDLARQLGSHFEPYAD- 93 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-------HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence 56788999999999999876 222222222 013445566666643 45788889999888886644332 2333
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhH
Q 012677 255 PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRR 333 (458)
Q Consensus 255 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~ 333 (458)
.++|.|+..+.+++.-++..|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+..... ....
T Consensus 94 -~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 94 -ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp -HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred -HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 38899999999999999999999999998754311111 15566667788899999999999988865444 1222
Q ss_pred HHh----hCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 334 AVH----AGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 334 i~~----~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
+-. ...++.+...+.|+ ++++.|-.++..+..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 211 34778888888887 688888888888855
No 140
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.0041 Score=61.79 Aligned_cols=195 Identities=13% Similarity=0.081 Sum_probs=137.2
Q ss_pred HHHHHHhcccCch-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCCh
Q 012677 234 LITTILNLSIHDE-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHP 311 (458)
Q Consensus 234 a~~~L~~ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~ 311 (458)
++..|..++..-. -|.-+.+.. +++.|+++|+.++..+.--+...+.|+...-.| +..+.+.|.|..|+.++.+.+.
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~-I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYP-IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccc-hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 3444445554432 466666765 899999999998777777777888888754445 7778889999999999998888
Q ss_pred HHHHHHHHHHHHhcccccc--hhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC----HHHHHHHHhcC----CH
Q 012677 312 LAMKDVASAIFSLCILLEN--KRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH----QDAIEEIGELG----AI 379 (458)
Q Consensus 312 ~~~~~a~~aL~~L~~~~~~--~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~----~~~~~~i~~~g----~i 379 (458)
..+.+..|+|+++..+.++ +-+.+..-++..++.+..++ .++..++.+|.|+..+ +..+..+.+.- ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999999876653 44577788999999999998 7899999999999662 33344333332 23
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHh
Q 012677 380 PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA 430 (458)
Q Consensus 380 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll 430 (458)
..|++.+..-. +-..+..+-+|.+++..+++.-.-+.++...+..+.+.+
T Consensus 568 k~l~~k~e~~n-p~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 568 KRLIDKYEENN-PMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHhcC-chhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 44556666433 555555677888888877654323444444555544443
No 141
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.17 E-value=0.0003 Score=50.78 Aligned_cols=44 Identities=41% Similarity=0.739 Sum_probs=31.9
Q ss_pred ccccccccccC----CccC-CCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 81 RCPISGEIMTD----PVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 81 ~C~ic~~~~~~----p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.||-|+.-|.. |+.- .|.|.|+..||.+|+.. ...||.++++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 45556554421 3333 59999999999999996 457999998764
No 142
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00022 Score=67.80 Aligned_cols=61 Identities=25% Similarity=0.487 Sum_probs=48.3
Q ss_pred ccccccccccccCCc-----cCCCcccccHHHHHHHHhcC-CCCCCCCCccCCCCCCcccHHHHHHH
Q 012677 79 EFRCPISGEIMTDPV-----VLANGQTFDRPCIQRWLDEG-NRTCPQTRQVLSHTVLIPNHLVREMI 139 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~-----~l~cgh~fc~~ci~~~~~~~-~~~CP~c~~~l~~~~~~~n~~l~~~i 139 (458)
..+||||++-+.-|+ .+.|||.|-..||++|+-+. ...||.|...-.+..+++-+.+|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 357999999888774 45799999999999999532 24899999888888888877765543
No 143
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.18 Score=49.34 Aligned_cols=240 Identities=14% Similarity=0.162 Sum_probs=165.3
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCc---------hhhhhhhhccCChHHHhhccCCCCC--CCChhHHHHHH
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMP---------LFRALFGESTDAIPLLLSPLSPGRA--DTDPGLLEDLI 235 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~---------~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~~~~~a~ 235 (458)
.+++.|+..|. .+.++....+..+..|+..+- ..-..+++ .+.++.|+.-+..-.. .+.......++
T Consensus 125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 47888888887 456666677777888875321 23445666 6778888877754311 11334556777
Q ss_pred HHHHhcccCch-hhhhhhcCCCCHHHHHHHHh-cC-CHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhh---c
Q 012677 236 TTILNLSIHDE-NKRLVAENPLAIPLLIDSVR-TG-TIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLE---E 308 (458)
Q Consensus 236 ~~L~~ls~~~~-~~~~i~~~~~~i~~Lv~lL~-~~-~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~---~ 308 (458)
..+-|+..-.+ ....+++. |.+..|+.-+. .+ -..-+..|..+|.-+-.+. +++..++...+|..|++-+. .
T Consensus 204 ~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 88888876554 55666666 57776665333 22 3445677777777776655 48888999888999988663 1
Q ss_pred C------ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-CcHHHHHHHHHHhcCCH---HHHHHHHhcCC
Q 012677 309 G------HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-SLVDELLAILAMLSSHQ---DAIEEIGELGA 378 (458)
Q Consensus 309 ~------~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~La~~~---~~~~~i~~~g~ 378 (458)
. ..+..++.-.+|+.+....+|+..++...+++...=+++.. ..+..++.+|-.....+ ++...+++.+|
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 1 23456777888888888999999999998888877777765 45777999998887744 57888899888
Q ss_pred HHHHHHHHhh---------cCChhHHhHHHHHHHHHhccC
Q 012677 379 IPCLLRIIRE---------STCERNKENCAAILYNICFTD 409 (458)
Q Consensus 379 i~~Lv~ll~~---------~~~~~~~~~a~~~L~~L~~~~ 409 (458)
+..+..+... ......-++.+.+|+.+-...
T Consensus 363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 8777655541 122566778888888776533
No 144
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.14 Score=53.08 Aligned_cols=215 Identities=15% Similarity=0.155 Sum_probs=121.3
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+++|++.|. +|+.++-.|+..|..|++.+|.+--. ..|.+..+|..+ ++.=+..+.+....+|+--++
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~------LAP~ffkllttS---sNNWmLIKiiKLF~aLtplEP- 251 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ------LAPLFYKLLVTS---SNNWVLIKLLKLFAALTPLEP- 251 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc------ccHHHHHHHhcc---CCCeehHHHHHHHhhccccCc-
Confidence 4666666664 55667777777777777777665422 234455555443 244455556666666664443
Q ss_pred hhhhhcCCCCHHHHHHHHhcCC-HHHHHHHHHHHH--HhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 248 KRLVAENPLAIPLLIDSVRTGT-IETRRNAAAALF--SLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~--~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
.+.+. .+|.|..++.+.. ..+.-.++.++- +++....+...-+.. ++..|-.++.+.|+..+.-++.+++.+
T Consensus 252 --RLgKK--Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI 326 (877)
T KOG1059|consen 252 --RLGKK--LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKI 326 (877)
T ss_pred --hhhhh--hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHH
Confidence 22232 5566777666542 223333333321 233222222222221 567777788888999999999999998
Q ss_pred ccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 325 CILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 325 ~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
...+. ..++ --+.+++.|.+. .++-+|+..|+.+..-. |-.+| +..|+..+...+....+..-+.-
T Consensus 327 ~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~eI-----Vk~LM~~~~~ae~t~yrdell~~ 395 (877)
T KOG1059|consen 327 LKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVSKK-NLMEI-----VKTLMKHVEKAEGTNYRDELLTR 395 (877)
T ss_pred hhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHHH-----HHHHHHHHHhccchhHHHHHHHH
Confidence 76543 2111 224466778766 78999999999886533 33333 34455555443323445555555
Q ss_pred HHHHhccC
Q 012677 402 LYNICFTD 409 (458)
Q Consensus 402 L~~L~~~~ 409 (458)
+..+|+.+
T Consensus 396 II~iCS~s 403 (877)
T KOG1059|consen 396 IISICSQS 403 (877)
T ss_pred HHHHhhhh
Confidence 55566655
No 145
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.08 E-value=0.0002 Score=67.66 Aligned_cols=47 Identities=28% Similarity=0.509 Sum_probs=40.6
Q ss_pred ccccccccccCCccCCCcccccHHHHHHHHhc-CCCCCCCCCccCCCC
Q 012677 81 RCPISGEIMTDPVVLANGQTFDRPCIQRWLDE-GNRTCPQTRQVLSHT 127 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~-~~~~CP~c~~~l~~~ 127 (458)
.|-||-+-=+|-.+-||||..|..|+..|..+ +..+||+||..+.-.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 59999999898777799999999999999854 367999999988654
No 146
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.024 Score=56.86 Aligned_cols=236 Identities=14% Similarity=0.113 Sum_probs=159.5
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
+.||.|-+-+.. .++..+.-.+.-|..|-.-++ ...+---....+.|..+|..++.++|..+-.+|.++-..-.+
T Consensus 167 ~~ipLL~eriy~----~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 167 EFIPLLRERIYV----INPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred HHHHHHHHHHhc----CCchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 444544444443 366666666666555543332 333332334677789999999999998888877776443333
Q ss_pred hhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCC---cHHHHH---HHHHH
Q 012677 290 KLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENS---LVDELL---AILAM 362 (458)
Q Consensus 290 ~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~---~~~~a~---~~L~~ 362 (458)
...-.+ ...++.++.-+.++++.++..|+.-|.....-........-.|++..++..+.+.+ .++-+. ..|..
T Consensus 242 ~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 242 SPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK 321 (675)
T ss_pred CccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence 333334 56788899988999999999998888888776665555556788888888887652 222221 23445
Q ss_pred hcCCHHHHHHHHhcC-CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHH
Q 012677 363 LSSHQDAIEEIGELG-AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKA 441 (458)
Q Consensus 363 La~~~~~~~~i~~~g-~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A 441 (458)
+++.+..++. ++.| .+..|.+.+.++ ....+-.++.-+..|-...++. -++-....-+.|.+-+.+.++.+..++
T Consensus 322 l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~q--l~~h~~~if~tLL~tLsd~sd~vvl~~ 397 (675)
T KOG0212|consen 322 LVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQ--LLVHNDSIFLTLLKTLSDRSDEVVLLA 397 (675)
T ss_pred HHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcch--hhhhccHHHHHHHHhhcCchhHHHHHH
Confidence 5556655555 5555 477788888865 4999999999999988877764 333334556667777777888999999
Q ss_pred HHHHHHHHhhHhh
Q 012677 442 NGILERLNKAALI 454 (458)
Q Consensus 442 ~~~L~~l~~~~~~ 454 (458)
..++..+|.-.+.
T Consensus 398 L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 398 LSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHhcCccc
Confidence 9999999865544
No 147
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0034 Score=63.78 Aligned_cols=218 Identities=14% Similarity=0.117 Sum_probs=132.5
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc-
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD- 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~- 245 (458)
.+.+.|+.... .|..+|..|++.|..|.....-. .-.....++++++. +..++..|+..+.-+..-.
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-------~~~Y~~A~~~lsD~----~e~VR~aAvqlv~v~gn~~p 266 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS-------KACYSRAVKHLSDD----YEDVRKAAVQLVSVWGNRCP 266 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhccccccc-------HHHHHHHHHHhcch----HHHHHHHHHHHHHHHHhcCC
Confidence 45555666654 56778888988887776532111 23456677777763 7788888876655433211
Q ss_pred ------hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHH
Q 012677 246 ------ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVAS 319 (458)
Q Consensus 246 ------~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 319 (458)
.+...+.+. +...+-..+...+..+|..|+.+|..+-...+ .+...-.=+.++.-++. .........
T Consensus 267 ~~~e~e~~e~kl~D~--aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe---e~i~QTLdKKlms~lRR--kr~ahkrpk 339 (823)
T KOG2259|consen 267 APLERESEEEKLKDA--AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE---EIIQQTLDKKLMSRLRR--KRTAHKRPK 339 (823)
T ss_pred CcccchhhhhhhHHH--HHHHHHHHHhcCceeeeehHHHHhchHHHhHH---HHHHHHHHHHHhhhhhh--hhhcccchH
Confidence 133444443 56667888888888999999999887744221 11111111122221111 011111111
Q ss_pred HHH-Hh--c------------ccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHH
Q 012677 320 AIF-SL--C------------ILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPC 381 (458)
Q Consensus 320 aL~-~L--~------------~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~ 381 (458)
.++ +. + ..++.-..++..|+=..+|.-|.+. +++..|+..++.|+. .|.-... ++.-
T Consensus 340 ~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldf 414 (823)
T KOG2259|consen 340 ALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDF 414 (823)
T ss_pred HHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHH
Confidence 121 11 0 0122334477888888899888888 899999999999987 4443333 3677
Q ss_pred HHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 382 LLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 382 Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
|+.++.+.. +.++..|+.+|..|+.+-
T Consensus 415 LvDMfNDE~-~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 415 LVDMFNDEI-EVVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHhccHH-HHHHHHHHHHHHHHHHHh
Confidence 899998654 899999999999998763
No 148
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.00043 Score=61.37 Aligned_cols=53 Identities=17% Similarity=0.493 Sum_probs=44.3
Q ss_pred CccccccccccccCCc----cCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 012677 78 YEFRCPISGEIMTDPV----VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~----~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~ 131 (458)
..|.||+|.+.+.+.+ .-||||.||..|+++.+.. ...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 3688999999998753 2389999999999999974 668999999999877654
No 149
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.02 E-value=0.0009 Score=46.32 Aligned_cols=55 Identities=27% Similarity=0.107 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 270 IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 270 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+.+|..|+++|.+++........-....+++.|+.+|+++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3689999999999876655444445567899999999999999999999999875
No 150
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0004 Score=66.53 Aligned_cols=50 Identities=24% Similarity=0.477 Sum_probs=40.0
Q ss_pred CCccccccccccccCCc-----c---CCCcccccHHHHHHHHhcC------CCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTDPV-----V---LANGQTFDRPCIQRWLDEG------NRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~-----~---l~cgh~fc~~ci~~~~~~~------~~~CP~c~~~l~~ 126 (458)
..+..|.||++...++. . .+|.|.||..||..|-... .+.||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45788999999887766 3 4599999999999998422 3689999987654
No 151
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.083 Score=54.97 Aligned_cols=268 Identities=12% Similarity=0.063 Sum_probs=158.8
Q ss_pred hhhhhhhhHHhhc---CCcHHHHHHHHHHHHHH---h---hCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHH
Q 012677 166 SRSHLNSLLEKMS---SSLSDQKEAAKELRLLT---K---RMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLIT 236 (458)
Q Consensus 166 ~~~~l~~Lv~~l~---~~~~~~~~a~~~L~~l~---~---~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~ 236 (458)
.+..+-.+|.-+. ++..+|..|+.+|.+-. + .++..|..|.+ ..++.-++ .|.+++..|..
T Consensus 170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMq------vvcEatq~----~d~~i~~aa~~ 239 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQ------VVCEATQS----PDEEIQVAAFQ 239 (859)
T ss_pred HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeee------eeeecccC----CcHHHHHHHHH
Confidence 3445666666663 44678888888886422 2 11222333322 22333333 48899999999
Q ss_pred HHHhccc-Cchh-hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-c-----------chh----Hh-hc--
Q 012677 237 TILNLSI-HDEN-KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-S-----------NKL----II-GK-- 295 (458)
Q Consensus 237 ~L~~ls~-~~~~-~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~-----------~~~----~i-~~-- 295 (458)
.|..+.. .-+. ...+.++ ..+.-+.-+++.+.++...++..=.+++..+ + +.. .. ..
T Consensus 240 ClvkIm~LyY~~m~~yM~~a--lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~ 317 (859)
T KOG1241|consen 240 CLVKIMSLYYEFMEPYMEQA--LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQAL 317 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHH
Confidence 8876643 2222 2222222 4444566677889999999988877776432 1 111 01 11
Q ss_pred cCchHHHHHHhhcC-------ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHh----ccCCc--HHHHHHHHHH
Q 012677 296 LGAMTPLIDLLEEG-------HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKI----MENSL--VDELLAILAM 362 (458)
Q Consensus 296 ~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll----~~~~~--~~~a~~~L~~ 362 (458)
.+++|.|+.+|... +-..-..|..+|.-++. .++...+++.+.++ +++++ ++.++.++..
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGS 390 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGS 390 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHh
Confidence 36778888888541 22344555555555432 22333445555544 45554 5557777776
Q ss_pred hcCCH-HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHH
Q 012677 363 LSSHQ-DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKA 441 (458)
Q Consensus 363 La~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A 441 (458)
+-..+ ..+..-+-.+++|.++.++.++ +--++..+.|+|..++.+-+..........+.+..++.-+. +.|++..++
T Consensus 391 Il~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~ 468 (859)
T KOG1241|consen 391 ILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNV 468 (859)
T ss_pred hhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHH
Confidence 66633 3444445677899999999954 58889999999999999876432222222233333333333 468999999
Q ss_pred HHHHHHHHhhHhh
Q 012677 442 NGILERLNKAALI 454 (458)
Q Consensus 442 ~~~L~~l~~~~~~ 454 (458)
+|++-.|.++.+.
T Consensus 469 CWAf~~Laea~~e 481 (859)
T KOG1241|consen 469 CWAFISLAEAAYE 481 (859)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999977653
No 152
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.98 E-value=0.074 Score=51.91 Aligned_cols=182 Identities=23% Similarity=0.270 Sum_probs=121.5
Q ss_pred hhhhhHHhhcC-CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMSS-SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+..+++.+.+ +...|..|...+..+.. ..+++.|..++.+. +..++..|+.+|..+-.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~----~~~vr~~a~~aLg~~~~---- 103 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLSDE----DPRVRDAAADALGELGD---- 103 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCC----CHHHHHHHHHHHHccCC----
Confidence 56677777754 46677777766544332 46789999999875 77889999887765431
Q ss_pred hhhhhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChH------------HH
Q 012677 248 KRLVAENPLAIPLLIDSVR-TGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPL------------AM 314 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~------------~~ 314 (458)
...++.|+.+|. +++..+|..++.+|..+-. ..++.+|+..+.+.... ++
T Consensus 104 -------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 104 -------PEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVR 166 (335)
T ss_pred -------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHH
Confidence 136788999999 5899999999999987733 23478888888775532 23
Q ss_pred HHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCCh
Q 012677 315 KDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCE 392 (458)
Q Consensus 315 ~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 392 (458)
..++.+|..+ .+.-.++.+..++.+. .++..+..+|..+.... ..+.+.+...+.+. +.
T Consensus 167 ~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~-~~ 227 (335)
T COG1413 167 AAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE-SL 227 (335)
T ss_pred HHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC-CH
Confidence 3333333332 2345678888888877 57888888888887654 23345556666643 36
Q ss_pred hHHhHHHHHHHHHh
Q 012677 393 RNKENCAAILYNIC 406 (458)
Q Consensus 393 ~~~~~a~~~L~~L~ 406 (458)
.++..++.+|..+-
T Consensus 228 ~vr~~~~~~l~~~~ 241 (335)
T COG1413 228 EVRKAALLALGEIG 241 (335)
T ss_pred HHHHHHHHHhcccC
Confidence 66666666655543
No 153
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.97 E-value=0.00074 Score=44.48 Aligned_cols=43 Identities=28% Similarity=0.532 Sum_probs=22.8
Q ss_pred cccccccc--cCCccC--CCcccccHHHHHHHHhcCCCCCCCCCccC
Q 012677 82 CPISGEIM--TDPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 82 C~ic~~~~--~~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l 124 (458)
||+|.+.+ +|--.. +||+.+|+.|..+-.......||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 79999888 222233 58999999999998875677899999864
No 154
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00038 Score=49.78 Aligned_cols=45 Identities=31% Similarity=0.583 Sum_probs=31.6
Q ss_pred ccccccccccC-CccC-CCcccccHHHHHHHHhcC--CCCCCCCCccCC
Q 012677 81 RCPISGEIMTD-PVVL-ANGQTFDRPCIQRWLDEG--NRTCPQTRQVLS 125 (458)
Q Consensus 81 ~C~ic~~~~~~-p~~l-~cgh~fc~~ci~~~~~~~--~~~CP~c~~~l~ 125 (458)
.||-|.-.-.| |.++ -|.|.|+..||.+|+... ...||.||+...
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34444433333 4444 599999999999999743 248999998764
No 155
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00068 Score=61.92 Aligned_cols=49 Identities=20% Similarity=0.500 Sum_probs=40.4
Q ss_pred cccccc-ccccCCcc----CCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 81 RCPISG-EIMTDPVV----LANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 81 ~C~ic~-~~~~~p~~----l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
.||+|. +.+.+|-+ -+|||+.|.+|+...|..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 499997 45666632 28999999999999999888899999999877654
No 156
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.93 E-value=0.00029 Score=67.30 Aligned_cols=35 Identities=23% Similarity=0.651 Sum_probs=31.6
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHh
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD 111 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~ 111 (458)
++++.||||...+++|++++|||..|+.|-...+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 56789999999999999999999999999876654
No 157
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00086 Score=63.34 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=37.4
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
...+....|-||.+...+.+.+||||..| |..-... ...||+||+.+.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 34556678999999999999999999987 7654432 456999998764
No 158
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.087 Score=53.66 Aligned_cols=183 Identities=14% Similarity=0.177 Sum_probs=123.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHh
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVH 336 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~ 336 (458)
.+|.++.-+.......+.+++..|..++...+..-...-..+||.|...|.+.++++++.+..+|..++..-+|.. +.
T Consensus 255 llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d--I~ 332 (569)
T KOG1242|consen 255 LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD--IQ 332 (569)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH--HH
Confidence 3444444444446677888999999888776666666668899999999999999999999999999988776654 11
Q ss_pred hCcHHHHHHHhccCC-cHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhh---cCChhHHhHHHHHHHHHhccCch-
Q 012677 337 AGAVRVILRKIMENS-LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRE---STCERNKENCAAILYNICFTDRT- 411 (458)
Q Consensus 337 ~g~v~~Lv~ll~~~~-~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~~- 411 (458)
-.+|.|++.+.++. -...++..|..-..-. .+++-.+..++-+|+. ..+...+..++.+..|+|.--++
T Consensus 333 -~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~-----~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp 406 (569)
T KOG1242|consen 333 -KIIPTLLDALADPSCYTPECLDSLGATTFVA-----EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP 406 (569)
T ss_pred -HHHHHHHHHhcCcccchHHHHHhhcceeeee-----eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH
Confidence 26788888888885 5666666655433210 0222334444555542 24578889999999999986533
Q ss_pred -hHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 412 -RTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 412 -~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
....++ ...+|-|-..+.+..|.+|.-++.+|..+-
T Consensus 407 ~~lapfl--~~Llp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 407 KDLAPFL--PSLLPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred HHHhhhH--HHHhhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 222222 223444455555557889999999995444
No 159
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00076 Score=63.66 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=39.7
Q ss_pred CccccccccccccCCccCCCcc-cccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQ-TFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh-~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
....|-||+...+|=+++||-| ..|..|-....- .++.||+||+++..
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence 3567999999999999999999 479999876653 35579999998754
No 160
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.84 E-value=0.28 Score=44.40 Aligned_cols=233 Identities=14% Similarity=0.134 Sum_probs=143.4
Q ss_pred hhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhc-------cCCC-CCCCChhHHHHHHHHHHhc
Q 012677 170 LNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSP-------LSPG-RADTDPGLLEDLITTILNL 241 (458)
Q Consensus 170 l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~l-------L~~~-~~~~~~~~~~~a~~~L~~l 241 (458)
+..++-.+. +++.++.|+..|..--+..+.....+-.+-|.+..|+.- |+.. .......-..+|+..|..+
T Consensus 28 ~~~~i~~l~-~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcv 106 (293)
T KOG3036|consen 28 AYQLILSLV-SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCV 106 (293)
T ss_pred hhhHHHHhh-CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHH
Confidence 445555553 345566677666654443333333333323443333221 1111 1112335567889999999
Q ss_pred ccCchhhhhhhcCCCCHH-HHHHHHhcC-----CHHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcCChHH
Q 012677 242 SIHDENKRLVAENPLAIP-LLIDSVRTG-----TIETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEGHPLA 313 (458)
Q Consensus 242 s~~~~~~~~i~~~~~~i~-~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~ 313 (458)
+.|++.|..+..+. +| -|-.+|..+ .+-.|-.+.+++..|..+++. -..+...++||..++.+..|+...
T Consensus 107 ASHpdTr~~FL~A~--iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelS 184 (293)
T KOG3036|consen 107 ASHPDTRRAFLRAH--IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELS 184 (293)
T ss_pred hcCcchHHHHHHcc--ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHH
Confidence 99999999999974 45 334555432 467899999999999987754 444567899999999999999999
Q ss_pred HHHHHHHHHHhcccccchhHHHh----hC----cHHHHHHHh-ccC--CcHHHHHHHHHHhcCCHHHHHHHHhcC--CH-
Q 012677 314 MKDVASAIFSLCILLENKRRAVH----AG----AVRVILRKI-MEN--SLVDELLAILAMLSSHQDAIEEIGELG--AI- 379 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~~~~~~i~~----~g----~v~~Lv~ll-~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g--~i- 379 (458)
+.-|+..+..+-.++.+-.-+.. -- .+..++.-| +.+ .+.++++++..+|+.++..|..+...- .+
T Consensus 185 KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lr 264 (293)
T KOG3036|consen 185 KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLR 264 (293)
T ss_pred HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhc
Confidence 99999999888877764332211 12 233333333 333 467889999999999999988874421 11
Q ss_pred -HHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 380 -PCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 380 -~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
...-.++++ +...+..-...+.||+.
T Consensus 265 d~tfs~~l~~--D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 265 DGTFSLLLKD--DPETKQWLQQLLKNLCT 291 (293)
T ss_pred cchHHHHHhc--ChhHHHHHHHHHHHhcc
Confidence 122344442 24555544445555543
No 161
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.77 E-value=0.00075 Score=45.49 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=37.6
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV 128 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~ 128 (458)
.+..|-.|...-...+++||||..|+.|..-+ ..+.||+|+.++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 44568888888888899999999999996533 2457999999987543
No 162
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.00094 Score=63.21 Aligned_cols=47 Identities=21% Similarity=0.519 Sum_probs=33.4
Q ss_pred cccccccccccCC---ccC-CCcccccHHHHHHHHhcCC--CCCCCCCccCCC
Q 012677 80 FRCPISGEIMTDP---VVL-ANGQTFDRPCIQRWLDEGN--RTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p---~~l-~cgh~fc~~ci~~~~~~~~--~~CP~c~~~l~~ 126 (458)
..|.||-+.+..- -.+ .|||+|+..|+.+||.-.+ ++||.|+-.+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 4699995554321 123 5999999999999998432 489999954443
No 163
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.70 E-value=0.013 Score=51.83 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=93.0
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcC---------------CCCHHHHHHHHhc------CCHHHHHHHHHHHHHhhc
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAEN---------------PLAIPLLIDSVRT------GTIETRRNAAAALFSLSA 285 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~---------------~~~i~~Lv~lL~~------~~~~~~~~a~~~L~~Ls~ 285 (458)
+......++..|.|+++.+.....+... +..+..|+.++.. ...+-....+.++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 4456778888999999887765544332 2356677877766 235567888999999999
Q ss_pred cCcchhHhhc--cCc--hHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhh---CcHHHHHHHhccC
Q 012677 286 LDSNKLIIGK--LGA--MTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHA---GAVRVILRKIMEN 350 (458)
Q Consensus 286 ~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~---g~v~~Lv~ll~~~ 350 (458)
..+.|..+.+ .+. |..|+..+.+.+..-|.-++.+|.|+|.+.+....+... +++|.|+--|..+
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence 9999999887 344 777888877788888889999999999999988887763 5666666555543
No 164
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.00068 Score=61.67 Aligned_cols=42 Identities=29% Similarity=0.406 Sum_probs=33.8
Q ss_pred ccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
...|.||++..+|.+.|+|||. -|..|=.+ -..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHHH
Confidence 6789999999999999999995 57777321 237999998653
No 165
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.13 Score=53.57 Aligned_cols=269 Identities=12% Similarity=0.097 Sum_probs=164.6
Q ss_pred hhhhhHHhhc-CCc-HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 169 HLNSLLEKMS-SSL-SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~-~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.+..|+.... +.+ ..+..++..|+-++.+-. .......+..++..++.-.... +++..++-.|+.+|.|.-....
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~i~-pevl~~~sN~iLtaIv~gmrk~--e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICEDID-PEVLEQQSNDILTAIVQGMRKE--ETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHccCC-HHHHHHHHhHHHHHHHhhcccc--CCchhHHHHHHHHHHHHHHHHH
Confidence 4455555553 222 366778888888886532 2233334345566666555442 3467889999999987532211
Q ss_pred -hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc-CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 247 -NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL-DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 247 -~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
|-..=.+.+.++....+.-++++.+++..|...|..+... .+.-..-.....+..-+.-++++++++...+..-=+++
T Consensus 207 ~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsti 286 (859)
T KOG1241|consen 207 ANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTI 286 (859)
T ss_pred HhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1111111123445556677788999999999998887543 23322222233455555666788888888888777766
Q ss_pred cccccc------------hh----HHHh---hCcHHHHHHHhccC---------CcHHH---HHHHHHHhcCCHHHHHHH
Q 012677 325 CILLEN------------KR----RAVH---AGAVRVILRKIMEN---------SLVDE---LLAILAMLSSHQDAIEEI 373 (458)
Q Consensus 325 ~~~~~~------------~~----~i~~---~g~v~~Lv~ll~~~---------~~~~~---a~~~L~~La~~~~~~~~i 373 (458)
|..+-. .. ...+ .+++|.|+++|... ..... |+..+..++.+.
T Consensus 287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~------ 360 (859)
T KOG1241|consen 287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD------ 360 (859)
T ss_pred HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc------
Confidence 643311 11 0111 27888999999631 12233 333333333322
Q ss_pred HhcCCHHHHHH----HHhhcCChhHHhHHHHHHHHHhccCchh-HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 374 GELGAIPCLLR----IIRESTCERNKENCAAILYNICFTDRTR-TREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 374 ~~~g~i~~Lv~----ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
.++.++. -+++ ++-.-++.|+.++..+-.+++.. ...++ .++++.+++++.+.+--+++.++|.|..+
T Consensus 361 ----Iv~~Vl~Fiee~i~~-pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI 433 (859)
T KOG1241|consen 361 ----IVPHVLPFIEENIQN-PDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRI 433 (859)
T ss_pred ----chhhhHHHHHHhcCC-cchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHH
Confidence 3344444 4444 34788999999999998877643 33344 67899999999988888999999999999
Q ss_pred HhhHh
Q 012677 449 NKAAL 453 (458)
Q Consensus 449 ~~~~~ 453 (458)
+.+.+
T Consensus 434 ~d~l~ 438 (859)
T KOG1241|consen 434 ADFLP 438 (859)
T ss_pred Hhhch
Confidence 98765
No 166
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.57 E-value=0.0049 Score=42.56 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=45.5
Q ss_pred hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 392 ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 392 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
+.++..|+++|.+++...+......+ ...++.|..++.+.++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~--~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL--PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH--HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 35789999999998887766555544 56889999999999999999999999865
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=0.094 Score=56.41 Aligned_cols=215 Identities=11% Similarity=0.067 Sum_probs=146.5
Q ss_pred HHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhc-C-
Q 012677 233 DLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEE-G- 309 (458)
Q Consensus 233 ~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~-~- 309 (458)
.|+..|..+----+-..-+.-.-|+.|-++++|+++..++|-.-+.+=..+-..|++ ...+++.++-...++.|.. +
T Consensus 489 RAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~ 568 (1387)
T KOG1517|consen 489 RALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQA 568 (1387)
T ss_pred HHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCC
Confidence 344444333322223333333336999999999999999998887776666555555 4456776666666666665 3
Q ss_pred -ChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC--C-cHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHH
Q 012677 310 -HPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--S-LVDELLAILAMLSS-HQDAIEEIGELGAIPCLL 383 (458)
Q Consensus 310 -~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~-~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv 383 (458)
+++-+.-|+-+|..+..+-. .+....+.+.+..-+..|.++ . ++.-++-.|..|=. .++.|=.=.+.++...|.
T Consensus 569 ~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~ 648 (1387)
T KOG1517|consen 569 IPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI 648 (1387)
T ss_pred CCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence 45778888888988887654 566678889999989999885 2 45557777777765 566666567889999999
Q ss_pred HHHhhcCChhHHhHHHHHHHHHhccC----chhHHHHH------------Hhhhhh---HHHHHHhhhCCHHHHHHHHHH
Q 012677 384 RIIRESTCERNKENCAAILYNICFTD----RTRTREIM------------EEENAN---GTLSRLAENGTSRAKRKANGI 444 (458)
Q Consensus 384 ~ll~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~------------~~~g~~---~~L~~ll~~~~~~~~~~A~~~ 444 (458)
.+|.++ .++++..|+-||..+-... ++. ...+ .+.... ..++.++..+++-++...+.+
T Consensus 649 ~~LsD~-vpEVRaAAVFALgtfl~~~~d~fde~-~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 649 LLLSDP-VPEVRAAAVFALGTFLSNGSDNFDEQ-TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HHhcCc-cHHHHHHHHHHHHHHhcccccccchh-hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 999975 4999999999999988752 211 1111 111112 256666778888888777777
Q ss_pred HHHHH
Q 012677 445 LERLN 449 (458)
Q Consensus 445 L~~l~ 449 (458)
|..+.
T Consensus 727 ls~~~ 731 (1387)
T KOG1517|consen 727 LSHFV 731 (1387)
T ss_pred HHHHH
Confidence 66543
No 168
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.53 E-value=0.19 Score=50.78 Aligned_cols=259 Identities=18% Similarity=0.136 Sum_probs=126.0
Q ss_pred hhhhhHHhhcCC--cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 169 HLNSLLEKMSSS--LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 169 ~l~~Lv~~l~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.+++++..|-++ .-+..++++.+..++..+ ....+.+ -.|..|-.+|+++ ....+-.|+.+|..|+...+
T Consensus 264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~--~~vs~L~~fL~s~----rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVD--QTVSSLRTFLKST----RVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHH--HHHHHHHHHHhcc----hHHHHHHHHHHHHHHHhhCC
Confidence 456666777444 567788888888888654 1222332 4567777778775 67888899999999987655
Q ss_pred hhhhhhcC---------CCCHH--HHHHHHhcCCHHHHHHHHHHHHHhhccC-cc-hhHhhc-------------cCchH
Q 012677 247 NKRLVAEN---------PLAIP--LLIDSVRTGTIETRRNAAAALFSLSALD-SN-KLIIGK-------------LGAMT 300 (458)
Q Consensus 247 ~~~~i~~~---------~~~i~--~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~-~~~i~~-------------~g~i~ 300 (458)
.+...... +.-+. ++..+|+.|+.+....-...+-++..+- ++ +..+++ ...+.
T Consensus 336 ~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~ 415 (898)
T COG5240 336 QKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLD 415 (898)
T ss_pred ceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHH
Confidence 33222221 11111 2334455555444444444444433221 11 111111 01122
Q ss_pred HHHHHh-hcCChHHHHHHHHHHHHhcccc-cchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcC-CHHHHHHHHhcC
Q 012677 301 PLIDLL-EEGHPLAMKDVASAIFSLCILL-ENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSS-HQDAIEEIGELG 377 (458)
Q Consensus 301 ~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g 377 (458)
.|...| +.|..+.+..+..+|..+.... +.+.+ ++..|...+.+.+.-+-++++|.-|-. .|..+. -|
T Consensus 416 FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~----P~ 486 (898)
T COG5240 416 FLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEYHQITVRILGILGREGPRAKT----PG 486 (898)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC----cc
Confidence 222211 2233334444444444333322 22222 222333333333333333333333322 110000 00
Q ss_pred -CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 378 -AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 378 -~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
.|..+..-+.- .+.-++..|+.+|...+....+. +. .......|-+.+.+.++.+++.|.-+|++|.
T Consensus 487 ~yvrhIyNR~iL-EN~ivRsaAv~aLskf~ln~~d~---~~-~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 487 KYVRHIYNRLIL-ENNIVRSAAVQALSKFALNISDV---VS-PQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHH-hhhHHHHHHHHHHHHhccCcccc---cc-HHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 12222222221 23677888888887766654432 11 1223445556677788999999999999986
No 169
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0016 Score=62.40 Aligned_cols=49 Identities=24% Similarity=0.506 Sum_probs=40.8
Q ss_pred CCCccccccccccccC---CccCCCcccccHHHHHHHHhcCC--CCCCCCCccC
Q 012677 76 LPYEFRCPISGEIMTD---PVVLANGQTFDRPCIQRWLDEGN--RTCPQTRQVL 124 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~---p~~l~cgh~fc~~ci~~~~~~~~--~~CP~c~~~l 124 (458)
...-|.|||-.+.-.| |+.+.|||..++..+.+..+.|. +.||.|-...
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 4567899998876653 78899999999999999998776 7999996543
No 170
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.50 E-value=0.00055 Score=70.13 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=34.1
Q ss_pred cccccccccccCCcc---CCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 80 FRCPISGEIMTDPVV---LANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~---l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
-.||+|..-+.|-.. .+|+|.||..||..|-.- ..+||+||..+..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 346666665555433 269999999999999874 5689999988765
No 171
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.49 E-value=0.055 Score=49.69 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=127.6
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhc-------cCCCCC-CCChhHHHHHHHHHHhcccCc
Q 012677 174 LEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSP-------LSPGRA-DTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 174 v~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~l-------L~~~~~-~~~~~~~~~a~~~L~~ls~~~ 245 (458)
|..|. +++.|..|+..|..--...+.....+-.+.|.+..|++= ++.+.- .....-..+|+..|..++.|+
T Consensus 3 i~~L~-~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshp 81 (262)
T PF04078_consen 3 ILDLC-NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHP 81 (262)
T ss_dssp HHHTS-SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-T
T ss_pred hHHhc-CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcCh
Confidence 34443 467788888777655444455555555556777666432 222100 001244567888888899999
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcCChHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGT-----IETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEGHPLAMKDVA 318 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 318 (458)
+.|..+.++. +.--|..+|+..+ +.+|-.+.+++..|...++. -..+.+.+.||.-++.++.|+.-.+.-|.
T Consensus 82 etr~~Fl~a~-iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAt 160 (262)
T PF04078_consen 82 ETRMPFLKAH-IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVAT 160 (262)
T ss_dssp TTHHHHHHTT-GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHcC-chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHH
Confidence 9999999985 5545566776542 56789999999999986543 44566789999999999999988889899
Q ss_pred HHHHHhcccccchhHHH-------h-hCcHHHHHHHhc-cC--CcHHHHHHHHHHhcCCHHHHHHHHh
Q 012677 319 SAIFSLCILLENKRRAV-------H-AGAVRVILRKIM-EN--SLVDELLAILAMLSSHQDAIEEIGE 375 (458)
Q Consensus 319 ~aL~~L~~~~~~~~~i~-------~-~g~v~~Lv~ll~-~~--~~~~~a~~~L~~La~~~~~~~~i~~ 375 (458)
-.+..+-.++.+-.-+. . ..++..+|.-|. ++ .+-+..+++-..|+.++..+..+..
T Consensus 161 fIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 161 FILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99888877765333221 1 123444444333 33 3567777887888888877777653
No 172
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.49 E-value=0.0022 Score=60.00 Aligned_cols=53 Identities=21% Similarity=0.464 Sum_probs=41.5
Q ss_pred CCCccccccccccccC--C-ccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 012677 76 LPYEFRCPISGEIMTD--P-VVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI 130 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~--p-~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~ 130 (458)
-...|.|||++..|.. + |.+ +|||.|+..+|.+.- ....||+|+.++...+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 4677999999999953 2 333 899999999999873 245799999999876543
No 173
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.36 E-value=0.0015 Score=68.51 Aligned_cols=47 Identities=21% Similarity=0.591 Sum_probs=36.3
Q ss_pred ccccccccccc--C---CccC--CCcccccHHHHHHHHhcC-CCCCCCCCccCCC
Q 012677 80 FRCPISGEIMT--D---PVVL--ANGQTFDRPCIQRWLDEG-NRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~--~---p~~l--~cgh~fc~~ci~~~~~~~-~~~CP~c~~~l~~ 126 (458)
-.|+||..++. | |-.. .|.|-||..|+.+|++.+ ..+||.||..++.
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 35999998764 2 3332 388999999999999854 5699999987753
No 174
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.32 E-value=0.098 Score=53.20 Aligned_cols=263 Identities=11% Similarity=0.114 Sum_probs=150.3
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchh--hhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLF--RALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.+..++..|. ..+.+|..|+.....++.--..+ -..+.. .|.| |.+-|. +.++++.--.+.++..+....
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~k-lg~i--LyE~lg----e~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAK-LGNI--LYENLG----EDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHH-HhHH--HHHhcC----cccHHHHHHHHHHHHHHhhhh
Confidence 4555666664 55788888888877776421100 011111 2222 333333 347788777777766554332
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
..+..---..|++|.|..+|++....+..+.+..+..++..........+ .-+--.|+.+|.+-+.+++.+|...+..+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 22211111236999999999999999999999999998876544333333 22344688888888999999999998887
Q ss_pred cccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHh-cCCHHHHHHHHhh--cCChhHHhHHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGE-LGAIPCLLRIIRE--STCERNKENCAAI 401 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~-~g~i~~Lv~ll~~--~~~~~~~~~a~~~ 401 (458)
+.--. -..++..|+.-|+. +++-.++-..+ +...+.+ .|-...|=.+|.+ .....+|.-.+++
T Consensus 758 s~aiG------PqdvL~~LlnnLkv---qeRq~Rvctsv-----aI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLka 823 (975)
T COG5181 758 SRAIG------PQDVLDILLNNLKV---QERQQRVCTSV-----AISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKA 823 (975)
T ss_pred HhhcC------HHHHHHHHHhcchH---HHHHhhhhhhh-----hhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHH
Confidence 53211 12344444444433 22211111111 1111122 2322333333432 2236778877787
Q ss_pred HHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 402 LYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 402 L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
++.+-..-.+....-+ ....|.|-..+.+-++.-++.|+.+++.|.-.++.
T Consensus 824 m~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 824 MCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 7777665544333333 33455566666677788899999999988765543
No 175
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.3 Score=53.43 Aligned_cols=219 Identities=14% Similarity=0.106 Sum_probs=130.9
Q ss_pred CChhHHHHHHHHHHhcccCchhhhhhhcC-CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--chhHhhccCchHHH
Q 012677 226 TDPGLLEDLITTILNLSIHDENKRLVAEN-PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKLIIGKLGAMTPL 302 (458)
Q Consensus 226 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~L 302 (458)
.+..+|.++-.+|..++..+......... ..+-..|.+.+++.....+...+.+|..|-.... ....+. ..|+.+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~Ev 743 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIPEV 743 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHH
Confidence 36789999999999888774322221111 0133345555556666777777777777654333 233222 235555
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhC------cHHHHHHHhccC----CcHHHHHHHHHHhcCCHHHHHH
Q 012677 303 IDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAG------AVRVILRKIMEN----SLVDELLAILAMLSSHQDAIEE 372 (458)
Q Consensus 303 v~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g------~v~~Lv~ll~~~----~~~~~a~~~L~~La~~~~~~~~ 372 (458)
+-.++..+...++.|-.+|..+.. .....+.| .+...+..+..+ .....+.. |..+..--.....
T Consensus 744 IL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 744 ILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKN 818 (1176)
T ss_pred HHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhc
Confidence 545566788999999999999873 11122222 455555555433 22222222 3323221222333
Q ss_pred HHhcCCHHHHHH----HHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 373 IGELGAIPCLLR----IIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 373 i~~~g~i~~Lv~----ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
+++.+.++.+++ +|. +.++.+...|++.+..++...+...-..-. .-.++.+..++++++...+.++..+|..|
T Consensus 819 ~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred cccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 444444555544 444 456999999999999999877643212111 23678888888999999999999999988
Q ss_pred HhhHh
Q 012677 449 NKAAL 453 (458)
Q Consensus 449 ~~~~~ 453 (458)
.+...
T Consensus 897 irkfg 901 (1176)
T KOG1248|consen 897 IRKFG 901 (1176)
T ss_pred HHHhC
Confidence 76543
No 176
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.17 E-value=0.085 Score=54.74 Aligned_cols=249 Identities=12% Similarity=0.130 Sum_probs=142.5
Q ss_pred CCcHHHHHHHHHHHHHHhhCchh--hhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCC
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLF--RALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPL 256 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~ 256 (458)
.++.+|.+|+..+..++.--... -..++. .|.| |.+.|.. .++++.--.+.+|..+...-.--+..--..+
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~-lGvv--LyEylge----eypEvLgsILgAikaI~nvigm~km~pPi~d 883 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGH-LGVV--LYEYLGE----EYPEVLGSILGAIKAIVNVIGMTKMTPPIKD 883 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccHHHHHHH-hhHH--HHHhcCc----ccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence 45788999999888877421111 012222 3333 4455544 4777776655555544322111111111235
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHH
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV 335 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 335 (458)
++|.|..+|++....++++++..+..++..........+ .-+--.|+.+|...+.+++.+|...+..++.-- .
T Consensus 884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI------G 957 (1172)
T KOG0213|consen 884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI------G 957 (1172)
T ss_pred hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc------C
Confidence 899999999999999999999999999875533222222 223346888888889999999999998875321 1
Q ss_pred hhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHhc-C---CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch
Q 012677 336 HAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGEL-G---AIPCLLRIIRESTCERNKENCAAILYNICFTDRT 411 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~~-g---~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 411 (458)
-..++..|+.-|+. +++-.++-..+ +...+.+. | ++|.|+.=-+.+ ...+|.-.+++|+.+-..-.+
T Consensus 958 PqdVLatLlnnLkv---qeRq~RvcTtv-----aIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyige 1028 (1172)
T KOG0213|consen 958 PQDVLATLLNNLKV---QERQNRVCTTV-----AIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGE 1028 (1172)
T ss_pred HHHHHHHHHhcchH---HHHHhchhhhh-----hhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHH
Confidence 12344444444433 22211110000 01111221 2 344444433333 377788788888777665544
Q ss_pred hHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 412 RTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 412 ~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
..+.-+ ....|.|-.-+.+-+..-++.|+.+++.|+-.
T Consensus 1029 mskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1029 MSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 333333 23556666666666777888888888887644
No 177
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.56 Score=48.71 Aligned_cols=230 Identities=14% Similarity=0.133 Sum_probs=132.3
Q ss_pred hhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch--h
Q 012677 170 LNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE--N 247 (458)
Q Consensus 170 l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~--~ 247 (458)
|+.|+.+=++..-+++.|+.+|..|-+.+|.. +.. .+.+..++.+|.+. +..+.-.+...+..|++..+ .
T Consensus 151 I~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~-~~W~~riv~LL~D~----~~gv~ta~~sLi~~lvk~~p~~y 222 (938)
T KOG1077|consen 151 IPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNP-GEWAQRIVHLLDDQ----HMGVVTAATSLIEALVKKNPESY 222 (938)
T ss_pred hHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cCh-hhHHHHHHHHhCcc----ccceeeehHHHHHHHHHcCCHHH
Confidence 45443322233455666666666666555543 222 46788899999874 55666666666766766544 2
Q ss_pred hhhhhcCCCCHHHHHHHHhc-------------CCHHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcC--C
Q 012677 248 KRLVAENPLAIPLLIDSVRT-------------GTIETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEG--H 310 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~-------------~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~--~ 310 (458)
+..+-. .+..|...... +.+=++...+++|.++-..+++ +..+. .+++.++...+.. +
T Consensus 223 k~~~~~---avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~ 297 (938)
T KOG1077|consen 223 KTCLPL---AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKS 297 (938)
T ss_pred hhhHHH---HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccc
Confidence 222211 11212221111 2345677777777777443333 33332 2344444443321 1
Q ss_pred hHHHH-HHHH----HHHHhcccc-cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHH
Q 012677 311 PLAMK-DVAS----AIFSLCILL-ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCL 382 (458)
Q Consensus 311 ~~~~~-~a~~----aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~L 382 (458)
..+++ +|-. -.-+|+.+- +....+.+ .+..|-++|.+. .++.-++..++.|++++...+.+... ...+
T Consensus 298 k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~I 373 (938)
T KOG1077|consen 298 KKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTI 373 (938)
T ss_pred cchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHH
Confidence 12221 2222 222444333 33333333 456677778766 68999999999999988777777666 7888
Q ss_pred HHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHH
Q 012677 383 LRIIRESTCERNKENCAAILYNICFTDRTRTREIME 418 (458)
Q Consensus 383 v~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 418 (458)
+..|+...+.+++..|+..|+.+|.... ++.++.
T Consensus 374 i~sLkterDvSirrravDLLY~mcD~~N--ak~IV~ 407 (938)
T KOG1077|consen 374 INSLKTERDVSIRRRAVDLLYAMCDVSN--AKQIVA 407 (938)
T ss_pred HHHhccccchHHHHHHHHHHHHHhchhh--HHHHHH
Confidence 9999866679999999999999998774 345553
No 178
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0047 Score=59.23 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=49.2
Q ss_pred ccccccccccc------CCccCCCcccccHHHHHHHHhcCCCCCCCCCccC--CCC---CCcccHHHHHHHHHH
Q 012677 80 FRCPISGEIMT------DPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVL--SHT---VLIPNHLVREMISQW 142 (458)
Q Consensus 80 ~~C~ic~~~~~------~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l--~~~---~~~~n~~l~~~i~~~ 142 (458)
..|-||.+.+. -|..+.|||++|..|+.+.+..+...||+||.+. ... .+..|+.+-+.++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 46999988775 3778899999999999999887667899999994 332 355677777777654
No 179
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.12 E-value=0.28 Score=49.42 Aligned_cols=152 Identities=16% Similarity=0.101 Sum_probs=111.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCCh----HHHHHHHHHHHHhcccccchhHH
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHP----LAMKDVASAIFSLCILLENKRRA 334 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~a~~aL~~L~~~~~~~~~i 334 (458)
..+..++.+++...+..|...|..|+.+......+....++..|.+++.+++. ......+.++..|-.+.-.--..
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 34777888888888888999999999988888888888889999999998743 56666777777665444311112
Q ss_pred HhhCcHHHHHHHhccC----CcHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 335 VHAGAVRVILRKIMEN----SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 335 ~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
+.-.+|.....+..-. .+-..|+..|.++... +.-+..+.++--+..|+..++.++ ..++..|+..|-.+....
T Consensus 166 ~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n-~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 166 VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN-QRIQTCAIALLNALFRKA 244 (713)
T ss_pred cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc-hHHHHHHHHHHHHHHhhC
Confidence 2223344444444322 5678899999999884 556777777888999999999765 888888998888887655
Q ss_pred ch
Q 012677 410 RT 411 (458)
Q Consensus 410 ~~ 411 (458)
++
T Consensus 245 ~~ 246 (713)
T KOG2999|consen 245 PD 246 (713)
T ss_pred Ch
Confidence 53
No 180
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.004 Score=55.36 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=34.0
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHh
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD 111 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~ 111 (458)
+.+.+...|.+|++..+|||+.+-||.|||.||.+++-
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 34666778999999999999999999999999999875
No 181
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.11 E-value=0.0041 Score=57.80 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=35.2
Q ss_pred cccccccccc--CCcc--CCCcccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 012677 81 RCPISGEIMT--DPVV--LANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV 128 (458)
Q Consensus 81 ~C~ic~~~~~--~p~~--l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~ 128 (458)
.||+|++.|. |--. .+||...|+.|....-..-+..||.||...+...
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 4999999883 3323 3699999999976554433568999999887654
No 182
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.09 E-value=0.11 Score=44.10 Aligned_cols=124 Identities=13% Similarity=0.123 Sum_probs=95.7
Q ss_pred hhhhcCCCCHHHHHHHHhcCC------HHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC--ChHHHHHHHHH
Q 012677 249 RLVAENPLAIPLLIDSVRTGT------IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG--HPLAMKDVASA 320 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~------~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~a 320 (458)
.+++..+ |+..|++++..+. .+....+..++.+|-.+........+...|..++..++.. +..+.+.|+..
T Consensus 5 ~EFI~~~-Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRD-GLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhcc-CHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4566664 8999999999886 3677778888888877765455667777899999988765 68899999999
Q ss_pred HHHhcccccchhHHHh-hCcHHHHHHHhccC--CcHHHHHHHHHHhcC--CHHHHHHH
Q 012677 321 IFSLCILLENKRRAVH-AGAVRVILRKIMEN--SLVDELLAILAMLSS--HQDAIEEI 373 (458)
Q Consensus 321 L~~L~~~~~~~~~i~~-~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~--~~~~~~~i 373 (458)
|-++...++..-..|. .=-++.|+..|... .++..+++.+-.|-. +++-|+.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999998887666555 45788899999866 678889988888755 44445544
No 183
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.07 E-value=0.17 Score=53.75 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=106.9
Q ss_pred ChhHHHHHHH-HHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHH
Q 012677 227 DPGLLEDLIT-TILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDL 305 (458)
Q Consensus 227 ~~~~~~~a~~-~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l 305 (458)
+...+..|++ +|..++.+++ +.. ..|-+++...+.|.++++..---|...+...+....+ ++..+.+=
T Consensus 32 n~~~kidAmK~iIa~M~~G~d-----mss--Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti~kD 100 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGED-----MSS--LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTIQKD 100 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCC-----hHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhh
Confidence 4444555544 5556666655 111 4455666666778888887777777777666543333 46666666
Q ss_pred hhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHH
Q 012677 306 LEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLL 383 (458)
Q Consensus 306 L~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv 383 (458)
+.++++.+|..|++++..| +..-+-..+++++.+++.++ -+++.|+-++..+=. -.+..+.+.|.+..+.
T Consensus 101 l~d~N~~iR~~AlR~ls~l------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~ 172 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLL------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILK 172 (757)
T ss_pred ccCCCHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHH
Confidence 7778888888888888776 22223334778888888877 467777777666632 2344556677788888
Q ss_pred HHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 384 RIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 384 ~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
.++.+. ++.+..+|+.+|..+...
T Consensus 173 ~l~~D~-dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADS-DPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCC-CchHHHHHHHHHHHhchh
Confidence 888765 488888888888887654
No 184
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.68 Score=48.09 Aligned_cols=260 Identities=13% Similarity=0.100 Sum_probs=154.4
Q ss_pred hhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhh
Q 012677 171 NSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKR 249 (458)
Q Consensus 171 ~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~ 249 (458)
..+-..| +.++..+.-|+..+.++-. .++++.+.. -|+ ++|.++. ...-++..|+-+|..|-+..+.
T Consensus 114 n~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~---DI~---KlLvS~~--~~~~vkqkaALclL~L~r~spD-- 181 (938)
T KOG1077|consen 114 NSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFAD---DIP---KLLVSGS--SMDYVKQKAALCLLRLFRKSPD-- 181 (938)
T ss_pred HHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhh---hhH---HHHhCCc--chHHHHHHHHHHHHHHHhcCcc--
Confidence 3343444 4567777788888887654 345555543 355 4444442 1345556666666665544332
Q ss_pred hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC--cchhHhhccCchHHHHHHhhc-------------CChHHH
Q 012677 250 LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD--SNKLIIGKLGAMTPLIDLLEE-------------GHPLAM 314 (458)
Q Consensus 250 ~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~-------------~~~~~~ 314 (458)
++..|+....++.+|...+..+...+...+-.|+... +++..+.- ++..|-.+... +.|=.+
T Consensus 182 -l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 182 -LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred -ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 2333568888999999988888888888888888644 23443322 22223222211 245577
Q ss_pred HHHHHHHHHhccccc--chhHHHhhCcHHHHHHHhccC----CcHH-----HHHHHHHHhcCCHH-HHHHHHhcCCHHHH
Q 012677 315 KDVASAIFSLCILLE--NKRRAVHAGAVRVILRKIMEN----SLVD-----ELLAILAMLSSHQD-AIEEIGELGAIPCL 382 (458)
Q Consensus 315 ~~a~~aL~~L~~~~~--~~~~i~~~g~v~~Lv~ll~~~----~~~~-----~a~~~L~~La~~~~-~~~~i~~~g~i~~L 382 (458)
...+++|.+.-.-++ .+.++. .+++.++....++ +++. ..+--..+|+.+-+ ..+.+. .++..|
T Consensus 259 vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~L 334 (938)
T KOG1077|consen 259 VKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQL 334 (938)
T ss_pred HHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHH
Confidence 788888888744333 333332 2344444444432 2221 12222234444322 233332 247888
Q ss_pred HHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh-hCCHHHHHHHHHHHHHHHhhHhh
Q 012677 383 LRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE-NGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 383 v~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
..+|.+-+ ..++.-|+.-++.|+..... ...+... .+.++..+. ..+.+++++|+.+|..||...+.
T Consensus 335 g~fls~rE-~NiRYLaLEsm~~L~ss~~s--~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Na 402 (938)
T KOG1077|consen 335 GQFLSHRE-TNIRYLALESMCKLASSEFS--IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA 402 (938)
T ss_pred HHHhhccc-ccchhhhHHHHHHHHhccch--HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhH
Confidence 89998644 89999999999999986543 2445433 677777777 45788999999999999976654
No 185
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.06 E-value=0.018 Score=55.70 Aligned_cols=50 Identities=34% Similarity=0.625 Sum_probs=43.8
Q ss_pred cccccccccccCCccCC-CcccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 012677 80 FRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI 130 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~ 130 (458)
+.|.|.+++.++||+-| .||.|.+.-|++++.. +.+||+++++++..++.
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV 51 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELV 51 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHee
Confidence 36999999999999986 9999999999999986 56899999998865543
No 186
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.02 E-value=0.18 Score=53.87 Aligned_cols=178 Identities=15% Similarity=0.108 Sum_probs=112.9
Q ss_pred hhhhHHhhc---CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 170 LNSLLEKMS---SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 170 l~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
+...++.|. .|.+++..|+..++.+...-..+-.... ...++.+++-|. +...+-.|++++..++...-
T Consensus 570 ~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~------nEiTRl~AvkAlt~Ia~S~l 641 (1233)
T KOG1824|consen 570 YDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLG------NEITRLTAVKALTLIAMSPL 641 (1233)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHh------chhHHHHHHHHHHHHHhccc
Confidence 444455552 4678888888888766643221111111 234555666555 44667788888887776543
Q ss_pred --hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 247 --NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 247 --~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
+...+.. .+++.|...++......+.....++-.|..+... ..... .-++..|..++...+..+-+.|...|.
T Consensus 642 ~i~l~~~l~--~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~L~ 718 (1233)
T KOG1824|consen 642 DIDLSPVLT--EILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAFLT 718 (1233)
T ss_pred eeehhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3333333 2788888888888778888777777777654311 11111 224445556666777788888999999
Q ss_pred HhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHH
Q 012677 323 SLCILLENKRRAVHAGAVRVILRKIMENSLVDELLA 358 (458)
Q Consensus 323 ~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~ 358 (458)
.+..........+..-+++.++.+++++-++-.++.
T Consensus 719 tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~ 754 (1233)
T KOG1824|consen 719 TLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALS 754 (1233)
T ss_pred HHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHH
Confidence 988887766666667788888998888744444333
No 187
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.02 E-value=0.0063 Score=48.98 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=42.5
Q ss_pred CccccccccccccCCccC-C---CcccccHHHHHHHHhc--CCCCCCCCCccCCCCC
Q 012677 78 YEFRCPISGEIMTDPVVL-A---NGQTFDRPCIQRWLDE--GNRTCPQTRQVLSHTV 128 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l-~---cgh~fc~~ci~~~~~~--~~~~CP~c~~~l~~~~ 128 (458)
.-+.|.||.+...|...+ | ||...|..|....|+. -++.||+|++.+..+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 346799999999999888 2 9999999999888873 3568999999987653
No 188
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.93 E-value=0.044 Score=48.60 Aligned_cols=119 Identities=18% Similarity=0.091 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHhhccCcchhHhhc----------------cCchHHHHHHhhcC------ChHHHHHHHHHHHHhcc
Q 012677 269 TIETRRNAAAALFSLSALDSNKLIIGK----------------LGAMTPLIDLLEEG------HPLAMKDVASAIFSLCI 326 (458)
Q Consensus 269 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~----------------~g~i~~Lv~lL~~~------~~~~~~~a~~aL~~L~~ 326 (458)
+......++.+|.||+..+..+..+.+ ...+..|+.++..| ...-....+.++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 344566778889999888877665443 23677888877662 34456788999999999
Q ss_pred cccchhHHHhh--Cc--HHHHHHHhccCC-c-HHHHHHHHHHhcCCHHHHHHHHhcC---CHHHHHHHHh
Q 012677 327 LLENKRRAVHA--GA--VRVILRKIMENS-L-VDELLAILAMLSSHQDAIEEIGELG---AIPCLLRIIR 387 (458)
Q Consensus 327 ~~~~~~~i~~~--g~--v~~Lv~ll~~~~-~-~~~a~~~L~~La~~~~~~~~i~~~g---~i~~Lv~ll~ 387 (458)
.++.|..+++. +. +..|+.++.+.+ + +.-++.+|.|+|.+.+....+.... .+|.|+--|.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999998875 44 666777766663 3 4449999999999988888887743 4555554444
No 189
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.85 E-value=0.37 Score=45.31 Aligned_cols=219 Identities=10% Similarity=0.088 Sum_probs=144.5
Q ss_pred hHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhc--CCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHH
Q 012677 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT--GTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDL 305 (458)
Q Consensus 229 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~l 305 (458)
-.+--|+..|.++....+.|..+-........++.++++ |..+++-+..-.+.-|+....-.+.|-. ...|.-|+.+
T Consensus 164 lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~i 243 (432)
T COG5231 164 LTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAI 243 (432)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888887777665544443466678888876 4678899999888888877655544443 5578888888
Q ss_pred hhcC-ChHHHHHHHHHHHHhcccc--cchhHHHhhCcHHHHHHHhccC-----CcHHH---HHHHHH----HhcC-----
Q 012677 306 LEEG-HPLAMKDVASAIFSLCILL--ENKRRAVHAGAVRVILRKIMEN-----SLVDE---LLAILA----MLSS----- 365 (458)
Q Consensus 306 L~~~-~~~~~~~a~~aL~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~-----~~~~~---a~~~L~----~La~----- 365 (458)
.+.. ..++..-++..+.|++.-. .....+.-.|-+.+-++.|..+ +++.. .-..|. .|+.
T Consensus 244 Vk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~ 323 (432)
T COG5231 244 VKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYL 323 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 8765 6678888999999998733 3444455566566667766543 11111 111111 1111
Q ss_pred ----------C---------HHHHHHHHhcC--CHHHHHHHHhhcCChh-HHhHHHHHHHHHhccCchhHHHHHHhhhhh
Q 012677 366 ----------H---------QDAIEEIGELG--AIPCLLRIIRESTCER-NKENCAAILYNICFTDRTRTREIMEEENAN 423 (458)
Q Consensus 366 ----------~---------~~~~~~i~~~g--~i~~Lv~ll~~~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~ 423 (458)
+ ..|...+.+.+ .+..|.++++... +. .-..|+.=+..+....|+ .+.++..-|+-
T Consensus 324 ~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~-~nt~i~vAc~Di~~~Vr~~PE-~~~vl~Kyg~k 401 (432)
T COG5231 324 NELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNN-PNTWICVACSDIFQLVRASPE-INAVLSKYGVK 401 (432)
T ss_pred HHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCC-CCceEeeeHhhHHHHHHhCch-HHHHHHHhhhH
Confidence 1 22345554443 4788888888533 43 344566666666665554 35788889999
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 424 GTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 424 ~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
..+.+|+.+++++++-.|..+++.+-
T Consensus 402 ~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 402 EIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999998653
No 190
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.85 E-value=0.41 Score=43.40 Aligned_cols=143 Identities=16% Similarity=0.106 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-------CcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHH
Q 012677 312 LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-------SLVDELLAILAMLSS--HQDAIEEIGELGAIPCL 382 (458)
Q Consensus 312 ~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-------~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~L 382 (458)
.-..+|+..|..++++++-|..++++-..-.|..+|... -++-.+++++..|.. +.+.-..+...+.||..
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 345688888999999999999999998877788887633 267789999999988 45567777899999999
Q ss_pred HHHHhhcCChhHHhHHHHHHHHHhccCchhH--HHHHHhhhhh-----HHHHHHhhhCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 383 LRIIRESTCERNKENCAAILYNICFTDRTRT--REIMEEENAN-----GTLSRLAENGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 383 v~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~~g~~-----~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
++.+..+ |+..|..|.-++..|-..+.+-. -...+.--++ ..+..+...++.+.-.++.++..+|+..+..+
T Consensus 174 Lrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 174 LRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 9999976 49999999999988876554210 0011111112 22334455678899999999998888777654
No 191
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.0055 Score=46.73 Aligned_cols=27 Identities=30% Similarity=0.748 Sum_probs=23.8
Q ss_pred CCcccccHHHHHHHHhcCCCCCCCCCcc
Q 012677 96 ANGQTFDRPCIQRWLDEGNRTCPQTRQV 123 (458)
Q Consensus 96 ~cgh~fc~~ci~~~~~~~~~~CP~c~~~ 123 (458)
.|.|.|+..||.+|++. ...||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 59999999999999996 4579999765
No 192
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.80 E-value=1.3 Score=42.62 Aligned_cols=188 Identities=18% Similarity=0.154 Sum_probs=116.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhccc---ccchhHHH
Q 012677 261 LIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL---LENKRRAV 335 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~---~~~~~~i~ 335 (458)
.+..+.......|+.+...|.++-........+.+ ...+..+.+.++.|+.+-+..|+.++.-++.. .+....+.
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 44555556788999999888887655433334433 44678888888888777777788877777654 23344444
Q ss_pred hhCcHHHHHHHhccC----CcHHHHHHHHHHhcC----CHHHHHHHHhcCCHHHH--HHHHhh---------cCChhHHh
Q 012677 336 HAGAVRVILRKIMEN----SLVDELLAILAMLSS----HQDAIEEIGELGAIPCL--LRIIRE---------STCERNKE 396 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~----~~~~~~~i~~~g~i~~L--v~ll~~---------~~~~~~~~ 396 (458)
+ ...|.|.+.+.++ ..+..|+.+|.-++. .++.-....+. +..+ ...++. .+++.+..
T Consensus 128 ~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~--le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 128 E-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMES--LESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred H-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHH--HHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 4 4788889998876 233445555554433 22222211111 1111 111111 11346777
Q ss_pred HHHHHHHHHhccCch-hHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 397 NCAAILYNICFTDRT-RTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 397 ~a~~~L~~L~~~~~~-~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
.|+.+-.-|...-+. .....+ ...++.|..++.+.+..+|..|-..|..|.+...
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 777777777655443 333333 3468999999999999999999999998876554
No 193
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.70 E-value=0.052 Score=42.35 Aligned_cols=69 Identities=7% Similarity=0.103 Sum_probs=51.6
Q ss_pred cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-CcHHHHHHHHHHhc
Q 012677 296 LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-SLVDELLAILAMLS 364 (458)
Q Consensus 296 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~La 364 (458)
...+++++..+.+.+..+|..|+.+|+|++..........-..+++.|.+++.++ +-...++..|-+|-
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 4579999999999999999999999999986654332222247888888888887 34555667666653
No 194
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.66 E-value=0.83 Score=45.40 Aligned_cols=145 Identities=11% Similarity=0.152 Sum_probs=103.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCc----chhHhhccCchHHHHHHhhcC-------ChHHHHHHHHHHHHhccccc
Q 012677 261 LIDSVRTGTIETRRNAAAALFSLSALDS----NKLIIGKLGAMTPLIDLLEEG-------HPLAMKDVASAIFSLCILLE 329 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~~L~~~~~ 329 (458)
+..+++..+.+-|-.|.-....+..+++ +++.+.++=+.+.+=++|.++ +.--+.-++..|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4556666677777777777788887664 677888977899999999763 22345667777888888776
Q ss_pred c--hhHHHhhCcHHHHHHHhccC---C------cHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 330 N--KRRAVHAGAVRVILRKIMEN---S------LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 330 ~--~~~i~~~g~v~~Lv~ll~~~---~------~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
- ...++ +.||.|.+.++.+ + +.+.+-..|+.+++++.+...++..|+++.+.++-.-.+-..-+.-+
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 3 33344 4689999999743 2 67889999999999999999999999999999776533323334445
Q ss_pred HHHHHHHhc
Q 012677 399 AAILYNICF 407 (458)
Q Consensus 399 ~~~L~~L~~ 407 (458)
+.++.-+..
T Consensus 174 l~Vlll~~~ 182 (698)
T KOG2611|consen 174 LKVLLLLVS 182 (698)
T ss_pred HHHHHHHHH
Confidence 555554443
No 195
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.15 Score=53.37 Aligned_cols=259 Identities=13% Similarity=0.090 Sum_probs=137.5
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
....++.+.+. .++.+|..+.-....+=..+ .....+ .|.+..|-+++.+. ++.+..+|+.+|..+...+.
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~-~gl~~~L~~ll~D~----~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVED-SGLVDALKDLLSDS----NPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccc-cchhHHHHHHhcCC----CchHHHHHHHHHHHHHHhCC
Confidence 35566666675 45677777766665555433 344555 89999999999864 88999999999998876554
Q ss_pred hhhhhhcCCCCHHHH-HHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 247 NKRLVAENPLAIPLL-IDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 247 ~~~~i~~~~~~i~~L-v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+...+. ..+.+ -.+|...+.-..-.-+.+|-.++..-.... .+ ...++.+...|.+.+..+...+..++.++
T Consensus 193 ~~~~~~----l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 193 SVNLLE----LNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAEDICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCCccc----ccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHHHHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 311111 11222 233333333333333444555544322211 11 22345555556666666666666666665
Q ss_pred cccccchhHHHhhCcHHHHHHHhccCC-cH------------------------------------HHHHHHHHHhcCCH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMENS-LV------------------------------------DELLAILAMLSSHQ 367 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~~-~~------------------------------------~~a~~~L~~La~~~ 367 (458)
..........+-...-++|+.++..++ ++ ..=+.++..++...
T Consensus 267 ~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~ 346 (734)
T KOG1061|consen 267 VKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDA 346 (734)
T ss_pred HHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHh
Confidence 544443333333345555555555442 11 11222222222111
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHH
Q 012677 368 DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILER 447 (458)
Q Consensus 368 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~ 447 (458)
...+ .+.-|.+.-.. -+.+....+++++.+++...+.. .+.++.|.+++...-+.+.+.+...++.
T Consensus 347 nl~q------vl~El~eYate-vD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~d 412 (734)
T KOG1061|consen 347 NLAQ------VLAELKEYATE-VDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRD 412 (734)
T ss_pred HHHH------HHHHHHHhhhh-hCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHh
Confidence 1100 01111122222 24667778888888887754321 4567777777776666666667777777
Q ss_pred HHhhHhh
Q 012677 448 LNKAALI 454 (458)
Q Consensus 448 l~~~~~~ 454 (458)
+-++.++
T Consensus 413 ilRkyP~ 419 (734)
T KOG1061|consen 413 ILRKYPN 419 (734)
T ss_pred hhhcCCC
Confidence 7666554
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.64 E-value=0.14 Score=55.19 Aligned_cols=155 Identities=11% Similarity=0.007 Sum_probs=119.2
Q ss_pred ccCchHHHHHHhhcCChHHHHHHHHHHHHh-cccccchhHHHhhCcHHHHHHHhccC-----CcHHHHHHHHHHhcC-CH
Q 012677 295 KLGAMTPLIDLLEEGHPLAMKDVASAIFSL-CILLENKRRAVHAGAVRVILRKIMEN-----SLVDELLAILAMLSS-HQ 367 (458)
Q Consensus 295 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L-~~~~~~~~~i~~~g~v~~Lv~ll~~~-----~~~~~a~~~L~~La~-~~ 367 (458)
..|++|..++||++...+.+.--+-.=..+ +.++..+..++..++-...++.|.++ +-+..|+-+|..++. .+
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 479999999999998777766444443344 44544555688888878888888773 335558888888888 68
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHH
Q 012677 368 DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILER 447 (458)
Q Consensus 368 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~ 447 (458)
.+++...+.+.+..-++.|.++..+-++.-.+-+|..|....... +-.-.+.++...|..++.+..++++..|+-+|..
T Consensus 590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~A-rw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEA-RWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchh-hhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 899999999999888888886434788899999999999876532 2333456788899999999999999999999988
Q ss_pred HHh
Q 012677 448 LNK 450 (458)
Q Consensus 448 l~~ 450 (458)
+-.
T Consensus 669 fl~ 671 (1387)
T KOG1517|consen 669 FLS 671 (1387)
T ss_pred Hhc
Confidence 765
No 197
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.61 E-value=0.0066 Score=48.59 Aligned_cols=32 Identities=19% Similarity=0.557 Sum_probs=26.0
Q ss_pred CCCccccccccccccCCcc--CCCcccccHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVV--LANGQTFDRPCIQ 107 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~--l~cgh~fc~~ci~ 107 (458)
+.++-.|++|...+.+++. .||||.||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4556679999998887654 3999999999975
No 198
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.59 E-value=0.18 Score=52.39 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=96.9
Q ss_pred chHHHHHHhhcCChHHHHHHHHHHHHhcccccchhH---HHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHH-HHH
Q 012677 298 AMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRR---AVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQD-AIE 371 (458)
Q Consensus 298 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~---i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~-~~~ 371 (458)
.+..++..|++.++.+++.|+..+..|+..-..+.. +...|+| |.+.|.+. ++.-..+.+|..+...-. .+.
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 344566788899999999999999999875554433 2223443 55666544 444444444443332110 010
Q ss_pred HHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 372 EIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.==-.+.+|.|.-+|++-+ ++++++++..+..||...++.. ...+=.-.---|++++.+.+..+++.|...+..+++.
T Consensus 878 ~pPi~dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v-~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYV-SAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred CCChhhhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 0011367899999999766 9999999999999999887532 1111011222367778888889999999888888765
No 199
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.57 E-value=0.0023 Score=67.40 Aligned_cols=46 Identities=22% Similarity=0.538 Sum_probs=39.0
Q ss_pred cccccccccccCCccCCCcccccHHHHHHHHhcCCC-CCCCCCccCCC
Q 012677 80 FRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNR-TCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~-~CP~c~~~l~~ 126 (458)
+.|++|.+ ..++++++|||.||..|+.+.+..... .||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 888888999999999999998875433 69999877654
No 200
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.53 E-value=0.67 Score=40.68 Aligned_cols=92 Identities=22% Similarity=0.206 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCc-hHHHHHH
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGA-MTPLIDL 305 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~-i~~Lv~l 305 (458)
++.++.+++-+++-|+..-+ .+++. .+|.+...|+++++.+|..|+..|..|...+-- .-.|- +..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---~~ve~--~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---NLVEP--YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---HHHHh--HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhhhhHHHHHH
Confidence 45788899999988876543 33342 788899999999999999999999999875422 11233 4788888
Q ss_pred hhcCChHHHHHHHHHHHHhccc
Q 012677 306 LEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 306 L~~~~~~~~~~a~~aL~~L~~~ 327 (458)
+.+.+++++..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999776
No 201
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.50 E-value=0.12 Score=47.76 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh
Q 012677 353 VDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE 431 (458)
Q Consensus 353 ~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~ 431 (458)
...|+.+|..++- +|..|..+.+..++..|+.+|....++.++.+++.+|..+...++.+++ ..++.+|+..+..+++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r-~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQR-DFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHH-HHHHhCCHHHHHHHHc
Confidence 4557889999988 9999999999999999999996555699999999999999988887765 5566888999999987
Q ss_pred hC--CHHHHHHHHHHHHHHH
Q 012677 432 NG--TSRAKRKANGILERLN 449 (458)
Q Consensus 432 ~~--~~~~~~~A~~~L~~l~ 449 (458)
+. +..++-+....|..+-
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccccHHHhHHHHHHHHHHH
Confidence 64 5568888877776543
No 202
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.49 E-value=0.0053 Score=58.28 Aligned_cols=44 Identities=32% Similarity=0.715 Sum_probs=35.3
Q ss_pred cccccccccccc-CC---ccCCCcccccHHHHHHHHhc-CCCCCCCCCc
Q 012677 79 EFRCPISGEIMT-DP---VVLANGQTFDRPCIQRWLDE-GNRTCPQTRQ 122 (458)
Q Consensus 79 ~~~C~ic~~~~~-~p---~~l~cgh~fc~~ci~~~~~~-~~~~CP~c~~ 122 (458)
++.|..|++.+- .| -.+||.|.||..|+.+++.+ +..+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 577999998762 22 34799999999999999854 4579999993
No 203
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.48 E-value=0.95 Score=48.66 Aligned_cols=267 Identities=15% Similarity=0.110 Sum_probs=141.7
Q ss_pred hhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhh
Q 012677 172 SLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRL 250 (458)
Q Consensus 172 ~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 250 (458)
.|++.+ ++|-+.|-.|...|-.-.....-.-..=.+ ...+..|+++|.+. +.++|..|++.|+.|++.-. ..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe-~kvv~~lLklL~D~----ngEVQnlAVKClg~lvsKvk--e~ 81 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSE-RKVVKMLLKLLEDK----NGEVQNLAVKCLGPLVSKVK--ED 81 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccch-hHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHhhch--HH
Confidence 566777 456677776766554322211101011112 45678888888875 88999999999998873211 11
Q ss_pred hhcCCCCHHHHHHHHhcCCHHHHHHHHHHH-HHhhccCcchhHhhccCchHHHHHHhhcC------ChHHHHHHHHHHHH
Q 012677 251 VAENPLAIPLLIDSVRTGTIETRRNAAAAL-FSLSALDSNKLIIGKLGAMTPLIDLLEEG------HPLAMKDVASAIFS 323 (458)
Q Consensus 251 i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L-~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~~~~a~~aL~~ 323 (458)
-++. .+..|..-+-++....|.-+.-.| ..++...+.........+.+.+...|... ...++..++..+.-
T Consensus 82 ~le~--~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d 159 (1233)
T KOG1824|consen 82 QLET--IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILAD 159 (1233)
T ss_pred HHHH--HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Confidence 1111 233333333334444443333332 22333332222222334455555544332 33366666666554
Q ss_pred hcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC--HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHH
Q 012677 324 LCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH--QDAIEEIGELGAIPCLLRIIRESTCERNKENCA 399 (458)
Q Consensus 324 L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 399 (458)
.-..-..-..-...+.+..++--+.+. -++++++.+|..|+.. .+.=. +.+..|++=|....+...-.--+
T Consensus 160 ~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q~~~~rt~I 234 (1233)
T KOG1824|consen 160 VLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQMSATRTYI 234 (1233)
T ss_pred HHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCchHHHHHHH
Confidence 322211111113345666666666666 5789999999999873 22211 23455555555433344455556
Q ss_pred HHHHHHhccCchhHHHHHHhhhhhHHHHHHh---hhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 400 AILYNICFTDRTRTREIMEEENANGTLSRLA---ENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 400 ~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll---~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
.+|..++.....+.-.-. ...++.+.+.. ...++..+++...++..+-+.+|.
T Consensus 235 q~l~~i~r~ag~r~~~h~--~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 235 QCLAAICRQAGHRFGSHL--DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHHHHhcchhhccc--chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence 667777765542211111 34567777776 556788999999999887766554
No 204
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.47 E-value=0.6 Score=43.01 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=120.4
Q ss_pred CHHHHHHHHHHHHHhhc-cCcchhHhhc-cCchHHHHH-Hh------hcC--Ch---HHHHHHHHHHHHhcccccchhHH
Q 012677 269 TIETRRNAAAALFSLSA-LDSNKLIIGK-LGAMTPLID-LL------EEG--HP---LAMKDVASAIFSLCILLENKRRA 334 (458)
Q Consensus 269 ~~~~~~~a~~~L~~Ls~-~~~~~~~i~~-~g~i~~Lv~-lL------~~~--~~---~~~~~a~~aL~~L~~~~~~~~~i 334 (458)
+++.|+.|..-|..--. .++-...+.. -|.+..|++ +. ..+ +. .-..+|+..|..++.+++-|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56778865544433221 1222334444 777777765 22 222 12 23456777888999999999999
Q ss_pred HhhCcHHHHHHHhccC-------CcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHH
Q 012677 335 VHAGAVRVILRKIMEN-------SLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNI 405 (458)
Q Consensus 335 ~~~g~v~~Lv~ll~~~-------~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 405 (458)
+++...-.|..+|... .++-.++++++.|.+ +++.-..+...+.+|..++.|..+ ++-.|..|.-++..|
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKI 166 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKI 166 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHH
Confidence 9999888888888633 357779999999998 567788889999999999999976 488999999999888
Q ss_pred hccCch---------hHHHHHHhhhhhHH-HHHHhhhCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 406 CFTDRT---------RTREIMEEENANGT-LSRLAENGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 406 ~~~~~~---------~~~~~~~~~g~~~~-L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
-..+.+ +..++. ..+.. +..+....+++.-++....-..|+.++..+
T Consensus 167 L~dd~GL~yiC~t~eRf~av~---~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar 223 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVA---MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAR 223 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHH---HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHH
T ss_pred HcchhHHHHHhcCHHHHHHHH---HHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHH
Confidence 665432 221221 12222 333455678888888888888888766553
No 205
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.05 Score=55.64 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=140.6
Q ss_pred HhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC------c
Q 012677 215 LLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD------S 288 (458)
Q Consensus 215 Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~------~ 288 (458)
|..+..+. |..++..|+..|..|+..-. +-+. .....+..++..+.++|..|+.++.-++.-. +
T Consensus 203 l~~~~~~~----D~~Vrt~A~eglL~L~eg~k----L~~~--~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 203 LIYLEHDQ----DFRVRTHAVEGLLALSEGFK----LSKA--CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHhcCC----CcchHHHHHHHHHhhccccc----ccHH--HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 55554443 67788888888877764322 1111 3455788888889999999988776655322 1
Q ss_pred -chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccCC-cHHHHHHHHHHh--
Q 012677 289 -NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMENS-LVDELLAILAML-- 363 (458)
Q Consensus 289 -~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~~-~~~~a~~~L~~L-- 363 (458)
+...+. ..++..+...+++.+..++..|+.+|..+-...+ ...+-.+..++. -++... ..++.-....+-
T Consensus 273 ~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms----~lRRkr~ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 273 SEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS----RLRRKRTAHKRPKALYSSGEW 347 (823)
T ss_pred hhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh----hhhhhhhcccchHHHHhcCCc
Confidence 112222 3367788888888899999999999988755332 233322222222 111110 111111111111
Q ss_pred ----------cC--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh
Q 012677 364 ----------SS--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE 431 (458)
Q Consensus 364 ----------a~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~ 431 (458)
.+ .++....|+.+|+.-.+|.=|.+.- -+++.+|+..++.|+...+.-. ...++.|+.+..
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf-~EVR~AAV~Sl~~La~ssP~FA------~~aldfLvDMfN 420 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEF-YEVRRAAVASLCSLATSSPGFA------VRALDFLVDMFN 420 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHHH-HHHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHhc
Confidence 00 2334556788999999999998654 8999999999999999777532 235788899888
Q ss_pred hCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 432 NGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 432 ~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
+.-..++.+|..+|..++.+-..+
T Consensus 421 DE~~~VRL~ai~aL~~Is~~l~i~ 444 (823)
T KOG2259|consen 421 DEIEVVRLKAIFALTMISVHLAIR 444 (823)
T ss_pred cHHHHHHHHHHHHHHHHHHHheec
Confidence 888889999999999998775443
No 206
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.41 E-value=2.4 Score=43.23 Aligned_cols=270 Identities=10% Similarity=0.057 Sum_probs=157.6
Q ss_pred hhhhhHHhhcC--CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHh-hccCCCCCCCChhHHHHHHHHHHhcccC-
Q 012677 169 HLNSLLEKMSS--SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLL-SPLSPGRADTDPGLLEDLITTILNLSIH- 244 (458)
Q Consensus 169 ~l~~Lv~~l~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~~~~~a~~~L~~ls~~- 244 (458)
.+..++..... ....+++++..+...+.. ......+..+..++-.++ --++. +.+..++-.|+++|.+-...
T Consensus 134 lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~---et~~avRLaaL~aL~dsl~fv 209 (858)
T COG5215 134 LMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKN---ETTSAVRLAALKALMDSLMFV 209 (858)
T ss_pred HHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhccc---CchHHHHHHHHHHHHHHHHHH
Confidence 34555555542 245677888888887753 333444444222333333 22333 24667888888888762211
Q ss_pred chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc-CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 245 DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL-DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
..|-..-.+.+.++....+.-+.++.+++..|.+.|..+..- .+.-....+.-......+.+++.+.++...|..--..
T Consensus 210 ~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWst 289 (858)
T COG5215 210 QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWST 289 (858)
T ss_pred HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 111111111123444556677788899999999998777542 2333344444344445567788888888888776655
Q ss_pred hccccc---------------ch--hHHHhhCcHHHHHHHhccC---------CcHH---HHHHHHHHhcCCHHHHHHHH
Q 012677 324 LCILLE---------------NK--RRAVHAGAVRVILRKIMEN---------SLVD---ELLAILAMLSSHQDAIEEIG 374 (458)
Q Consensus 324 L~~~~~---------------~~--~~i~~~g~v~~Lv~ll~~~---------~~~~---~a~~~L~~La~~~~~~~~i~ 374 (458)
+|...- |. ....-++++|.|+.||... .... .|+.....++.+. |
T Consensus 290 iceEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~-----i- 363 (858)
T COG5215 290 ICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK-----I- 363 (858)
T ss_pred HHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH-----h-
Confidence 554321 00 0111246899999999641 1222 2444444443322 2
Q ss_pred hcCCHHHHHHHHh---hcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 375 ELGAIPCLLRIIR---ESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 375 ~~g~i~~Lv~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
+.+++.++. .+++-.-++.|+.++..+-.++...+..-+. ..++|.+..++.+.+--++..++|.+..++.+
T Consensus 364 ----~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 364 ----MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred ----HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 233333332 1345777899999999988877544333332 56788899988877778999999999998876
Q ss_pred Hh
Q 012677 452 AL 453 (458)
Q Consensus 452 ~~ 453 (458)
-.
T Consensus 439 va 440 (858)
T COG5215 439 VA 440 (858)
T ss_pred HH
Confidence 43
No 207
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.37 E-value=0.11 Score=55.06 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=80.4
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchh
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKL 291 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 291 (458)
+..+.+=+++. ++.++..|+..|..+-. ..+.. .+++++.+++.++++.+|..|+-++.++=.. .+.
T Consensus 94 vNti~kDl~d~----N~~iR~~AlR~ls~l~~-----~el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~ 160 (757)
T COG5096 94 VNTIQKDLQDP----NEEIRGFALRTLSLLRV-----KELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKD 160 (757)
T ss_pred HHHHHhhccCC----CHHHHHHHHHHHHhcCh-----HHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHh
Confidence 45555555554 89999999998865432 23333 3778899999999999999999999988543 345
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
...+.|.+..+..++.+.+|.+..+|+.+|..+...
T Consensus 161 l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 161 LYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 566688999999999999999999999999988654
No 208
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=2.3 Score=44.97 Aligned_cols=141 Identities=12% Similarity=0.081 Sum_probs=80.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhcccccchhHHHhhCc
Q 012677 261 LIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLENKRRAVHAGA 339 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~ 339 (458)
++++|..++.+..+....+|..++.+-+.-+-++++=.-+.+..++.- .+...+..|+.+|...-.+.++-.+-+....
T Consensus 257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~ 336 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM 336 (866)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence 345556667777777777777776654433333332112222222221 3456777777777766665554333222111
Q ss_pred H---------------HHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 340 V---------------RVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 340 v---------------~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
+ ..+++.|+++ .++.+|+..++.|......+ .+ +..|+++|... +++.+...+.-+
T Consensus 337 L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~-~m-----v~eLl~fL~~~-d~~~k~~~as~I 409 (866)
T KOG1062|consen 337 LLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVR-VM-----VKELLEFLESS-DEDFKADIASKI 409 (866)
T ss_pred HHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHH-HH-----HHHHHHHHHhc-cHHHHHHHHHHH
Confidence 1 2355566666 57888888888775543332 22 45677888766 488888888888
Q ss_pred HHHhcc
Q 012677 403 YNICFT 408 (458)
Q Consensus 403 ~~L~~~ 408 (458)
..++..
T Consensus 410 ~~laEk 415 (866)
T KOG1062|consen 410 AELAEK 415 (866)
T ss_pred HHHHHh
Confidence 887753
No 209
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.32 E-value=2.3 Score=42.44 Aligned_cols=175 Identities=17% Similarity=0.152 Sum_probs=112.8
Q ss_pred ChhHHHHHHHHHHhcccCch----hhhhhhcCCCCHHHHHHHHhcCC-------HHHHHHHHHHHHHhhccCcc--hhHh
Q 012677 227 DPGLLEDLITTILNLSIHDE----NKRLVAENPLAIPLLIDSVRTGT-------IETRRNAAAALFSLSALDSN--KLII 293 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~~~i~~Lv~lL~~~~-------~~~~~~a~~~L~~Ls~~~~~--~~~i 293 (458)
+.+.+-.|+.....+.++.+ +|+.+.++- +.+.+-++|.+++ .-.+.-++.+|.-++..++- .+.+
T Consensus 24 ~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAV-Gf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~ 102 (698)
T KOG2611|consen 24 RDEERFAALLLVTKFVKNDDIVALNKKLVFEAV-GFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEM 102 (698)
T ss_pred ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHh-ccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHH
Confidence 44667778888888888776 677788875 6777778887542 33466677778888887754 2334
Q ss_pred hccCchHHHHHHhhcC-ChH------HHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCC-cHHH--HHHHHHHh
Q 012677 294 GKLGAMTPLIDLLEEG-HPL------AMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENS-LVDE--LLAILAML 363 (458)
Q Consensus 294 ~~~g~i~~Lv~lL~~~-~~~------~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~-~~~~--a~~~L~~L 363 (458)
+ ..||.|..++..+ +++ +...+-.+|+..+..+.+...++..|+++.+-++-.-++ -... ++.++.-+
T Consensus 103 v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~ 180 (698)
T KOG2611|consen 103 V--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLL 180 (698)
T ss_pred H--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 3 4599999998764 443 678899999999999889999999999999997765442 2222 33333332
Q ss_pred cC----CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 364 SS----HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 364 a~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
.. .++.-..+..- |..+..=+...+ ...+-..+.+|..+-.
T Consensus 181 ~~~~~cw~e~~~~flal--i~~va~df~~~~-~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 181 VSKLDCWSETIERFLAL--IAAVARDFAVLH-NALKFELCHLLSAVLS 225 (698)
T ss_pred HHhcccCcCCHHHHHHH--HHHHHHHHHHhh-hHHHHHHHHHHHHHHh
Confidence 22 22222222211 333333333333 5667777888875543
No 210
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.31 E-value=0.095 Score=38.35 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcC
Q 012677 314 MKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELG 377 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g 377 (458)
.+.|++++.+++..+.....+-+.++++.++++.... .++-.|.-+|.-++.+.++.+.+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5789999999999888877777789999999999865 688999999999999999999887766
No 211
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.28 E-value=0.5 Score=42.21 Aligned_cols=192 Identities=16% Similarity=0.134 Sum_probs=120.9
Q ss_pred cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhh-------ccCCCCC-CCChhHHHHHHHHHHhcccCchhhh
Q 012677 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLS-------PLSPGRA-DTDPGLLEDLITTILNLSIHDENKR 249 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-------lL~~~~~-~~~~~~~~~a~~~L~~ls~~~~~~~ 249 (458)
.+++.++ |+..|..--...+.....+-.+.|....|++ +|+.+.- +....-..+|+..|..++.+++.+.
T Consensus 58 ~g~~kEq--aL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~ 135 (315)
T COG5209 58 VGNPKEQ--ALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKK 135 (315)
T ss_pred cCCHHHH--HHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchhe
Confidence 4555554 7777776665556554444443444433332 2222111 1122445688889999999999999
Q ss_pred hhhcCCCCHHH-HHHHHhcC-----CHHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 250 LVAENPLAIPL-LIDSVRTG-----TIETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 250 ~i~~~~~~i~~-Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
.+.++. +|. |-..|... -.-.|..+.+++..|..+++. ...+....+||..++++..++.-.+.-|+..+
T Consensus 136 ~Fl~Ah--iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~ 213 (315)
T COG5209 136 VFLDAH--IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIF 213 (315)
T ss_pred eeeecc--cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999874 442 33444322 356788999999999988753 44556688999999999999887777777777
Q ss_pred HHhcccccchhHHH----hhC----cHHHHHHHh-ccC--CcHHHHHHHHHHhcCCHHHHHHH
Q 012677 322 FSLCILLENKRRAV----HAG----AVRVILRKI-MEN--SLVDELLAILAMLSSHQDAIEEI 373 (458)
Q Consensus 322 ~~L~~~~~~~~~i~----~~g----~v~~Lv~ll-~~~--~~~~~a~~~L~~La~~~~~~~~i 373 (458)
..+-.++.+-.-+. +-- ++..++.-+ +.+ .+.+.++++-..|+..+..|..+
T Consensus 214 qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 214 QKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 77766665433221 112 233333222 222 46777888888888888877766
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.27 E-value=0.5 Score=51.95 Aligned_cols=254 Identities=13% Similarity=0.139 Sum_probs=148.7
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc-----CchhhhhhhcCC
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI-----HDENKRLVAENP 255 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~-----~~~~~~~i~~~~ 255 (458)
.+.+.+|+..|..++..... +... ..++|-++.++.++ .+.++..|+.+|..+-. ...+...+.+
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d--e~~L--DRVlPY~v~l~~Ds----~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-- 506 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD--EVKL--DRVLPYFVHLLMDS----EADVRATALETLTELLALVRDIPPSDANIFPE-- 506 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch--HHHH--hhhHHHHHHHhcCc----hHHHHHHHHHHHHHHHhhccCCCcccchhhHh--
Confidence 56678888888888864221 1122 36789999999875 88999999988876532 1224444444
Q ss_pred CCHHHHHHHHhcC-CHHHHHHHHHHHHHhhcc------------------CcchhHhh----c------cCchHHH-HHH
Q 012677 256 LAIPLLIDSVRTG-TIETRRNAAAALFSLSAL------------------DSNKLIIG----K------LGAMTPL-IDL 305 (458)
Q Consensus 256 ~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~------------------~~~~~~i~----~------~g~i~~L-v~l 305 (458)
.+.|.|-.++... +.-+|..=+.-|..|+.. +.+-+... + ...|+.+ +.+
T Consensus 507 YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sL 586 (1431)
T KOG1240|consen 507 YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSL 586 (1431)
T ss_pred hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHH
Confidence 4888888888773 333443333334333321 11111110 0 0122232 235
Q ss_pred hhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHH--HHHHHHHhcCCHHHHHHHHhcCCHHHHH
Q 012677 306 LEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDE--LLAILAMLSSHQDAIEEIGELGAIPCLL 383 (458)
Q Consensus 306 L~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~--a~~~L~~La~~~~~~~~i~~~g~i~~Lv 383 (458)
|.+.++-++..-+..|.-||..-.-.. ...=.++.|+.+|.+.+.+-+ =..-|..+|..-. ..-++++.+|.|.
T Consensus 587 lsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~ 662 (1431)
T KOG1240|consen 587 LSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQ 662 (1431)
T ss_pred HcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHH
Confidence 555566677776777777764322110 011256778888887754333 2333333333111 1113455688888
Q ss_pred HHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 384 RIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 384 ~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+-|.++. +-+...|+++|..|+...--+-..++ ..++.+.-++-..+.=+++.++.+|....+..
T Consensus 663 Q~ltD~E-E~Viv~aL~~ls~Lik~~ll~K~~v~---~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 663 QGLTDGE-EAVIVSALGSLSILIKLGLLRKPAVK---DILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HhccCcc-hhhHHHHHHHHHHHHHhcccchHHHH---HHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 8888765 99999999999999986532211222 24555666677778889999999988776543
No 213
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=0.86 Score=48.05 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=70.6
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
...+-.+.+.|+......+.-++..|+.+|++++..+ ++. ...|-+.++|++.++-+|+.|+-+...+-.-..
T Consensus 102 qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~E-----mar--dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P 174 (866)
T KOG1062|consen 102 QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPE-----MAR--DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP 174 (866)
T ss_pred hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHH-----HhH--HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc
Confidence 3444555566655444458889999999999998543 333 377888899999999999999988877765443
Q ss_pred chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
+...+ .++.-.++|.+.+..+...++..+..+|..
T Consensus 175 ~l~e~----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 175 DLVEH----FVIAFRKLLCEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred hHHHH----hhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence 32222 233344555555566666666666666654
No 214
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.21 E-value=0.67 Score=43.68 Aligned_cols=221 Identities=14% Similarity=0.027 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHH
Q 012677 182 SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLL 261 (458)
Q Consensus 182 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~L 261 (458)
-.+.-|+..+.++... ++.|..+-.....-..++..++.+. ++..+|-..+-++..++.++.-...+-+....+--|
T Consensus 164 lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~v--g~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 164 LTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYV--GVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3566788888888774 5566555432445566777777642 357889999999888887766543333323345556
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHhhccCcchhHh---hccCchHHHHHHhhcC---ChHHHHHHHHHH-------------
Q 012677 262 IDSVRTG-TIETRRNAAAALFSLSALDSNKLII---GKLGAMTPLIDLLEEG---HPLAMKDVASAI------------- 321 (458)
Q Consensus 262 v~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i---~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL------------- 321 (458)
+.+.+.. ...+.+.+++++.|+..- ..+..| .-.|-+.+-|++|..+ +.+.+..--..=
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK-~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDK-SPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7777664 456778889999998762 223333 3355566667766543 444333221110
Q ss_pred ----H-----Hhcccc---------cchhHHHhh--CcHHHHHHHhccC--C-cHHHHHHHHHHhcC-CHHHHHHHHhcC
Q 012677 322 ----F-----SLCILL---------ENKRRAVHA--GAVRVILRKIMEN--S-LVDELLAILAMLSS-HQDAIEEIGELG 377 (458)
Q Consensus 322 ----~-----~L~~~~---------~~~~~i~~~--g~v~~Lv~ll~~~--~-~~~~a~~~L~~La~-~~~~~~~i~~~g 377 (458)
. .|+.++ .|...+.+. ..+..|..++... . ....|+.=|..+.. .|+++..+.+.|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 0 111111 233334443 5778888888755 2 44556666666666 899999999999
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
+=..+.+++.+++ ++++-+|+.++..+-.
T Consensus 400 ~k~~im~L~nh~d-~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDD-DDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCC-chhhHHHHHHHHHHHh
Confidence 9999999999764 9999999999987643
No 215
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.84 Score=47.57 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc-cchhHHHh
Q 012677 258 IPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL-ENKRRAVH 336 (458)
Q Consensus 258 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~ 336 (458)
-+-++-+|++.-+-+|..|+.+|+.+..- +-+.+. -++|.|+.-|.++|+.++..|..+++.|+.-+ .|--.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLk--YPeAlr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~--- 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLK--YPEALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ--- 218 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHh--hhHhHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc---
Confidence 34477888998899999999999887542 223332 36999999999999999999999999999744 45443
Q ss_pred hCcHHHHHHHhccC---CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhh
Q 012677 337 AGAVRVILRKIMEN---SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRE 388 (458)
Q Consensus 337 ~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~ 388 (458)
..|.+..+|... -+.-+.+.++.+|+- .|.-.+.+ +++|.+++.+
T Consensus 219 --LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKL-----ieplt~li~s 267 (877)
T KOG1059|consen 219 --LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKL-----IEPITELMES 267 (877)
T ss_pred --ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhh-----hhHHHHHHHh
Confidence 457778888654 356777778888877 55544433 4555555543
No 216
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.08 E-value=1 Score=47.58 Aligned_cols=201 Identities=15% Similarity=0.060 Sum_probs=140.2
Q ss_pred ccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHH-hhccCcchhHhhccCchHHHHHHhhcCC-hHHHHHHHH
Q 012677 242 SIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFS-LSALDSNKLIIGKLGAMTPLIDLLEEGH-PLAMKDVAS 319 (458)
Q Consensus 242 s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~ 319 (458)
+.....+...++. |+...|.++....+...+..+..+|.. ++.. .. .....++++...+.+.. .-..-.++.
T Consensus 491 A~~K~~~~~~Ik~-~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~----~~~~v~~~~~s~~~~d~~~~en~E~L~ 564 (748)
T KOG4151|consen 491 AKEKYERAKKIKP-GGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GE----RSYEVVKPLDSALHNDEKGLENFEALE 564 (748)
T ss_pred hhhHHhcCccccc-cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CC----chhhhhhhhcchhhhhHHHHHHHHHHH
Confidence 3344456666776 488889999888888888888888872 1111 00 01345666666665432 223346888
Q ss_pred HHHHhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHH-HHh-cCCHHHHHHHHhhcCChhH
Q 012677 320 AIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEE-IGE-LGAIPCLLRIIRESTCERN 394 (458)
Q Consensus 320 aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~-i~~-~g~i~~Lv~ll~~~~~~~~ 394 (458)
+|.||+..++ .|..++..-+++.+-.++.+. ..+..++..+.||..++..-.+ +.+ ...++.....+.. ..+..
T Consensus 565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~-~~E~~ 643 (748)
T KOG4151|consen 565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV-ADEKF 643 (748)
T ss_pred HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh-hhhHH
Confidence 9999998665 677788876666666555544 5788899999999998875444 455 3357777777765 44888
Q ss_pred HhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 395 KENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 395 ~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
...+++++..|+....+.+..+.+-..+...++.++.++++.++......+-++-
T Consensus 644 ~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 644 ELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF 698 (748)
T ss_pred hhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence 8899999998888777665545555567888999999999988888777666643
No 217
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.01 E-value=0.081 Score=41.46 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-hhhhhh
Q 012677 184 QKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-NKRLVA 252 (458)
Q Consensus 184 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~ 252 (458)
+..-+..|.+++..++.++..+.+ .|+++.+++...-. +.++-+++-|+.+++||+.+.+ |+..+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD--~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNID--DHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCC--cccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445678899999999999999999 99999999886542 3589999999999999998765 544443
No 218
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.62 Score=48.86 Aligned_cols=238 Identities=15% Similarity=0.158 Sum_probs=139.6
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
..+.+|+.+. .|.+.++-.-..+.+.+...|... .+++..++.=..+ .++.++..|+..+..+-..
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a------~~avnt~~kD~~d----~np~iR~lAlrtm~~l~v~--- 116 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA------ILAVNTFLKDCED----PNPLIRALALRTMGCLRVD--- 116 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH------HhhhhhhhccCCC----CCHHHHHHHhhceeeEeeh---
Confidence 4555666664 455555556666777776655332 3445555544443 4888888888877655432
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
.+.+ .....|...++.+++.+|..++..+.++ ++.+.......|.++.|-+++.+.++.+..+|+.+|..+...
T Consensus 117 --~i~e--y~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 117 --KITE--YLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred --HHHH--HHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 2222 2455688999999999999888777776 456677777899999999999988999999999999999876
Q ss_pred ccc-hhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcC----CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 328 LEN-KRRAVHAGAVRVILRKIMENSLVDELLAILAMLSS----HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 328 ~~~-~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
+.+ .......-.+..++..+... ..-.-+.+|-.++. ++.....| +..+...|++. +..+...++.++
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec-~EW~qi~IL~~l~~y~p~d~~ea~~i-----~~r~~p~Lqh~-n~avvlsavKv~ 263 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNEC-TEWGQIFILDCLAEYVPKDSREAEDI-----CERLTPRLQHA-NSAVVLSAVKVI 263 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHh-hhhhHHHHHHHHHhcCCCCchhHHHH-----HHHhhhhhccC-CcceEeehHHHH
Confidence 643 11111222333344433332 11112333333433 12122222 34445555544 366666777777
Q ss_pred HHHhccCchhHHHHHHhhhhhHHHHHHhhhCC
Q 012677 403 YNICFTDRTRTREIMEEENANGTLSRLAENGT 434 (458)
Q Consensus 403 ~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 434 (458)
..+...-......+. ....++|+.++.+.+
T Consensus 264 l~~~~~~~~~~~~~~--~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 264 LQLVKYLKQVNELLF--KKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHHHHHHHHHHH--HHhcccceeeecccc
Confidence 776664433111222 233455555554443
No 219
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.93 E-value=0.0073 Score=53.48 Aligned_cols=48 Identities=23% Similarity=0.590 Sum_probs=37.3
Q ss_pred cccccccc-ccccCCc--cC--C-CcccccHHHHHHHHhcCCCCCC--CCCccCCC
Q 012677 79 EFRCPISG-EIMTDPV--VL--A-NGQTFDRPCIQRWLDEGNRTCP--QTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~-~~~~~p~--~l--~-cgh~fc~~ci~~~~~~~~~~CP--~c~~~l~~ 126 (458)
+-.||+|. +.+-+|- ++ | |=|.+|.+|+.+.|..|.-.|| -|++.+..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 44799998 4455552 22 5 9999999999999999988999 58776654
No 220
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=6.2 Score=41.90 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=90.9
Q ss_pred HhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-CcHHHHHHHHHHhcC------------------
Q 012677 305 LLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-SLVDELLAILAMLSS------------------ 365 (458)
Q Consensus 305 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~La~------------------ 365 (458)
+|.+.++.+...++.+.++|+-..++ .+++.+|+++|++. .++...+..+..++.
T Consensus 295 Ll~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ss 368 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSS 368 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecC
Confidence 55677889999999999999865532 24688999999877 566666666666653
Q ss_pred CHHH----H----HHHHhcCCHHHHHHHH----hhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC
Q 012677 366 HQDA----I----EEIGELGAIPCLLRII----RESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG 433 (458)
Q Consensus 366 ~~~~----~----~~i~~~g~i~~Lv~ll----~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 433 (458)
++.. | ..++.++-|..+++=+ .+++ .++...++.+|...+..... + ..--+..|+.|+.+.
T Consensus 369 Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d-~~faa~aV~AiGrCA~~~~s-----v-~~tCL~gLv~Llssh 441 (968)
T KOG1060|consen 369 DPTQVKILKLEILSNLANESNISEILRELQTYIKSSD-RSFAAAAVKAIGRCASRIGS-----V-TDTCLNGLVQLLSSH 441 (968)
T ss_pred CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHhhCc-----h-hhHHHHHHHHHHhcc
Confidence 1111 1 1223444455555433 3333 45666666666665554322 1 133566788888888
Q ss_pred CHHHHHHHHHHHHHHHhhHhhhh
Q 012677 434 TSRAKRKANGILERLNKAALIVH 456 (458)
Q Consensus 434 ~~~~~~~A~~~L~~l~~~~~~~~ 456 (458)
+..+...|+..|+.|-...+.+|
T Consensus 442 de~Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 442 DELVVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred cchhHHHHHHHHHHHHhhChHHH
Confidence 88899999999998887777665
No 221
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=0.02 Score=60.35 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=28.5
Q ss_pred CCCcccccccccc-ccCCccC-CCcccccHHHHHHHHh
Q 012677 76 LPYEFRCPISGEI-MTDPVVL-ANGQTFDRPCIQRWLD 111 (458)
Q Consensus 76 ~~~~~~C~ic~~~-~~~p~~l-~cgh~fc~~ci~~~~~ 111 (458)
+...-.|.+|... +..|..+ ||||.|++.|+.+...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 4556679999864 4567665 9999999999998865
No 222
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=2.1 Score=46.66 Aligned_cols=254 Identities=18% Similarity=0.227 Sum_probs=153.0
Q ss_pred HHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHh
Q 012677 187 AAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVR 266 (458)
Q Consensus 187 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~ 266 (458)
.-..|..+.+.+.+|...+.+ +.++..++.++-+ .+-+...+.++..|-..++.. + .. .-+-.+|..|+
T Consensus 662 gwDcLisllKnnteNqklFre-anGvklilpflin------dehRSslLrivscLitvdpkq--v-hh-qelmalVdtLk 730 (2799)
T KOG1788|consen 662 GWDCLISLLKNNTENQKLFRE-ANGVKLILPFLIN------DEHRSSLLRIVSCLITVDPKQ--V-HH-QELMALVDTLK 730 (2799)
T ss_pred hHHHHHHHHhccchhhHHHHh-hcCceEEEEeeec------hHHHHHHHHHHHHHhccCccc--c-cH-HHHHHHHHHHH
Confidence 345677788889999999999 8999888888843 233444445554444333311 1 11 13445777777
Q ss_pred cCC------------HHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhc----------CChHHHHHHHHHHHH
Q 012677 267 TGT------------IETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEE----------GHPLAMKDVASAIFS 323 (458)
Q Consensus 267 ~~~------------~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~~aL~~ 323 (458)
++- ........+++..+.... ..+...+++|++..|...|-. ++.-+-..-...|+.
T Consensus 731 sgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFr 810 (2799)
T KOG1788|consen 731 SGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFR 810 (2799)
T ss_pred hcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHH
Confidence 742 233455556666665333 456677889999988887732 122222223333332
Q ss_pred h-----cccccchhHH-------------HhhC---------cHHHHHHHhc----cCCcHH--HHHHHHHHhcC-----
Q 012677 324 L-----CILLENKRRA-------------VHAG---------AVRVILRKIM----ENSLVD--ELLAILAMLSS----- 365 (458)
Q Consensus 324 L-----~~~~~~~~~i-------------~~~g---------~v~~Lv~ll~----~~~~~~--~a~~~L~~La~----- 365 (458)
+ +.+..|+..+ .+.| +|..|.++-- .+.+.. .|+.-+..+-.
T Consensus 811 lfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifav 890 (2799)
T KOG1788|consen 811 LFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAV 890 (2799)
T ss_pred HHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeee
Confidence 2 3334455432 1223 2222222211 112221 13333332211
Q ss_pred -CH-----HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHh---hhCCHH
Q 012677 366 -HQ-----DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA---ENGTSR 436 (458)
Q Consensus 366 -~~-----~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll---~~~~~~ 436 (458)
.| ..++.|..+|++..|++.+-.. .++.|..-+..|..++..++..+ ......|-+..|.+++ .+|+..
T Consensus 891 ntPsGqfnpdk~~iynagavRvlirslLln-ypK~qlefl~lleSlaRaspfna-elltS~gcvellleIiypflsgssp 968 (2799)
T KOG1788|consen 891 NTPSGQFNPDKQKIYNAGAVRVLIRSLLLN-YPKLQLEFLNLLESLARASPFNA-ELLTSAGCVELLLEIIYPFLSGSSP 968 (2799)
T ss_pred ccCCCCcCchHhhhcccchhHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCch-hhhhcccHHHHHHHHhhhhhcCCch
Confidence 11 2378889999999999887743 59999999999999999888764 6777789999998876 467777
Q ss_pred HHHHHHHHHHHHHhhHh
Q 012677 437 AKRKANGILERLNKAAL 453 (458)
Q Consensus 437 ~~~~A~~~L~~l~~~~~ 453 (458)
.-.+|..++..|+.+..
T Consensus 969 fLshalkIvemLgayrl 985 (2799)
T KOG1788|consen 969 FLSHALKIVEMLGAYRL 985 (2799)
T ss_pred HhhccHHHHHHHhhccC
Confidence 77888888888776543
No 223
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=0.032 Score=58.54 Aligned_cols=43 Identities=19% Similarity=0.494 Sum_probs=35.4
Q ss_pred CccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccC
Q 012677 78 YEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l 124 (458)
..-.|..|.-.+.=|++- .|||.||+.|+. .+...||.|+...
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccchhh
Confidence 335799999999999765 899999999998 3567899998733
No 224
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.67 E-value=0.39 Score=44.43 Aligned_cols=97 Identities=11% Similarity=0.222 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcc-cccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHH
Q 012677 312 LAMKDVASAIFSLCI-LLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRII 386 (458)
Q Consensus 312 ~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll 386 (458)
.....|+.+|..++. +++.+..+.+..++..|+++|... .++..++.+|..+.. ++.|.+.+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345678899998886 556777788899999999999532 677778888777655 899999999999999999999
Q ss_pred hhc-CChhHHhHHHHHHHHHhcc
Q 012677 387 RES-TCERNKENCAAILYNICFT 408 (458)
Q Consensus 387 ~~~-~~~~~~~~a~~~L~~L~~~ 408 (458)
++. .+.+++-.++..|+-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 853 3578888899888876553
No 225
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.54 E-value=0.19 Score=36.73 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhh
Q 012677 353 VDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENA 422 (458)
Q Consensus 353 ~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~ 422 (458)
.+.|++++.++++++.+...+-+.+.++.++++...++...++--|..+|.-++...+.. +++.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~--~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGA--EILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHH--HHHHHcCC
Confidence 467999999999999999999989999999999998777899999999999999877553 66665554
No 226
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.013 Score=59.31 Aligned_cols=40 Identities=28% Similarity=0.558 Sum_probs=33.3
Q ss_pred CCCccccccccccc----cCCccCCCcccccHHHHHHHHhcCCCCCC
Q 012677 76 LPYEFRCPISGEIM----TDPVVLANGQTFDRPCIQRWLDEGNRTCP 118 (458)
Q Consensus 76 ~~~~~~C~ic~~~~----~~p~~l~cgh~fc~~ci~~~~~~~~~~CP 118 (458)
+.+-+.|+||...| ..||.+-|||+.|+.|++...+. +||
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp 51 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP 51 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence 55667899997766 46999999999999999988864 577
No 227
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=94.53 E-value=0.011 Score=43.55 Aligned_cols=63 Identities=24% Similarity=0.433 Sum_probs=45.7
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||.|+..+..+.+.+. +. -+..|++|..+++..+|.+.+++....++||. .++..|+.|.
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~--~Lk~~I~~~~ 68 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR--ALKSAIEEWC 68 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H--HHHHHHHHHH
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH--HHHHHHHHHH
Confidence 3579999999988766554 33 48999999999888999999888888888875 7888888773
No 228
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.49 E-value=5.7 Score=43.16 Aligned_cols=243 Identities=16% Similarity=0.114 Sum_probs=149.9
Q ss_pred hhhccCChHHHhhccCCCC-CCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHh----cCC----HHHHHH
Q 012677 205 FGESTDAIPLLLSPLSPGR-ADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVR----TGT----IETRRN 275 (458)
Q Consensus 205 i~~~~g~i~~Lv~lL~~~~-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~----~~~----~~~~~~ 275 (458)
+.+ .|++..|+.++.+-. ...+.......+..|..+++-..||..+... ++++.|+..|. .++ .++-+.
T Consensus 113 ~~~-~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~-~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 113 LAE-CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLEL-NALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred hhc-CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHc-CCHHHHHHHHHHHHhCccccccchHHHH
Confidence 445 899999999887531 1234567778888999999999999999997 49998988774 333 455555
Q ss_pred HHHHHHHhhccCc---chhHh--hc--------cCchHHHHHHhhcC----ChHHHHHHHHHHHHhcccccchhHH-Hhh
Q 012677 276 AAAALFSLSALDS---NKLII--GK--------LGAMTPLIDLLEEG----HPLAMKDVASAIFSLCILLENKRRA-VHA 337 (458)
Q Consensus 276 a~~~L~~Ls~~~~---~~~~i--~~--------~g~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~~~~~~~i-~~~ 337 (458)
...++-.|..... ..... .. ..-+..++..+.++ ++.+....+++|-+|+..++..... ++.
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 5555544433211 11110 11 11255666666543 6788888999999999887765542 221
Q ss_pred CcHHHHHHHhc-c-C--CcHHHHHHHHHHhcC----C---HHHHHHHHhcCCHHHHHHHHhhcC-------ChhH-----
Q 012677 338 GAVRVILRKIM-E-N--SLVDELLAILAMLSS----H---QDAIEEIGELGAIPCLLRIIREST-------CERN----- 394 (458)
Q Consensus 338 g~v~~Lv~ll~-~-~--~~~~~a~~~L~~La~----~---~~~~~~i~~~g~i~~Lv~ll~~~~-------~~~~----- 394 (458)
+.+.+++=. + . .-....+..++.++. + ..-|+.|++.|.+...+++|...- +++-
T Consensus 271 --F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 --FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred --HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 111111111 1 1 111223445555544 2 346899999999999998886421 2222
Q ss_pred ---HhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-CHHHHHHHHHHHHHHHhhHh
Q 012677 395 ---KENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG-TSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 395 ---~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~ 453 (458)
-..++..|.-|+.+....+.. +. ...++.+..|-+.. +..+-..|-.+|..|+....
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ~~-~~-~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~ 409 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQLL-IA-EQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED 409 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHHHH-HH-hhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence 335888999999887755433 33 56777777776543 44577777777777776443
No 229
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.049 Score=48.90 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=40.8
Q ss_pred CCCCccccccccccccCCc----cCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 75 GLPYEFRCPISGEIMTDPV----VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~----~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
.....|.|||..-.|.+-. ..+|||.|-...+.+.- ...|++|+......+.
T Consensus 107 ~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 107 TQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDV 162 (293)
T ss_pred cccceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCe
Confidence 3467899999999997743 34899999988887654 3479999999987653
No 230
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.49 E-value=0.24 Score=38.69 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=49.7
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
.+++++..+.+.+ .+++..|+.+|+|++....+.. +..=....+.|.+++.+.+++++..|..+-+.|
T Consensus 28 Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~~~~~--l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 28 ILPPVLKCFDDQD-SRVRYYACEALYNISKVARGEI--LPYFNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 4788888888664 9999999999999998765432 111134667778888888888887776555443
No 231
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.49 E-value=1.3 Score=42.93 Aligned_cols=200 Identities=9% Similarity=0.061 Sum_probs=139.8
Q ss_pred hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hh-Hhhc--cCchHHHHHHhhc--CChHHHHHHHHHHHH
Q 012677 250 LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KL-IIGK--LGAMTPLIDLLEE--GHPLAMKDVASAIFS 323 (458)
Q Consensus 250 ~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~-~i~~--~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~ 323 (458)
.+... +.+..|+..|..-+-+.|..++.+..++-....+ +. ..++ ..--|.++..|-. +++++.-.+...|..
T Consensus 71 Ei~~~-dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRS-DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHH-THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHh-CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 33344 4888899999999999999999999988765422 22 1111 1111233333323 267788888888999
Q ss_pred hcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhc-CCHHHHHHHHhcC---CHHHHHHHHhhcCChhHHhH
Q 012677 324 LCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLS-SHQDAIEEIGELG---AIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 324 L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La-~~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~ 397 (458)
...++.....+.....+..+.+.+..+ ++...|..++..|- .++..-..+...+ ....+..+|.+ ++--++.+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s-~NYvtkrq 228 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES-SNYVTKRQ 228 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT--SSHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC-CCeEeehh
Confidence 998888777888888899999999877 78888999999864 4887777776665 35666778875 46999999
Q ss_pred HHHHHHHHhccCchh--HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 398 CAAILYNICFTDRTR--TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 398 a~~~L~~L~~~~~~~--~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
++..|..|-....+. +.+.+....-+..+..|+.+.+..++-.|-.+.+.+-..
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999999998766542 223444455667788888999999999998888766544
No 232
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.46 E-value=0.46 Score=47.88 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=110.8
Q ss_pred chHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCc------HHHHHHHHHHhcCCHHHHH
Q 012677 298 AMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSL------VDELLAILAMLSSHQDAIE 371 (458)
Q Consensus 298 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~------~~~a~~~L~~La~~~~~~~ 371 (458)
....+..++.+++...+..|..-|..++.+......+++..++..|.+++.++.. ...++.++..|-.+.-.-=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4456778888998888888999999999999999999999999999999998832 2334444444432211000
Q ss_pred HHHhcCCHHHHHHHHhh-cCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 372 EIGELGAIPCLLRIIRE-STCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
..+...+|...+.++.- -.+..+-..|+..|.++..++... ...+.+.--++.|+..++.++..++.+|..+|..+-.
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~-~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTL-RQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHH-HHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 00111223333333321 123677889999999999888643 4667778888999999999999999999999988877
Q ss_pred hHhh
Q 012677 451 AALI 454 (458)
Q Consensus 451 ~~~~ 454 (458)
.++.
T Consensus 243 ~a~~ 246 (713)
T KOG2999|consen 243 KAPD 246 (713)
T ss_pred hCCh
Confidence 6654
No 233
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=94.36 E-value=0.048 Score=49.37 Aligned_cols=45 Identities=29% Similarity=0.448 Sum_probs=38.0
Q ss_pred ccccccccccccCCccC-CCcccccHHHHHHHHhcC-CCCCCCCCcc
Q 012677 79 EFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEG-NRTCPQTRQV 123 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~-~~~CP~c~~~ 123 (458)
+++|||......+|++- .|||.|.|..|..++... ...||+-+..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 67899999999999886 699999999999999742 3479996655
No 234
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.25 E-value=0.19 Score=40.50 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=57.7
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
.+..|+++|..+.++.+..-|+.=|..++...+. -+.++...|+-..+.+|+.+.++.++..|..+++.+-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4889999996555577777888888889987765 4688889999999999999999999999999998764
No 235
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=94.25 E-value=0.1 Score=47.09 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCC-------HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhH
Q 012677 352 LVDELLAILAMLSSHQDAIEEIGELGA-------IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANG 424 (458)
Q Consensus 352 ~~~~a~~~L~~La~~~~~~~~i~~~g~-------i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~ 424 (458)
.+.-|+.+|+.|+-.+.|-..++..+- +..|++++....+...+|.|+.+|.+|+..++...+.+..+.+.+.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 477789999998888888777777663 4556666665566899999999999999999877777777889999
Q ss_pred HHHHHhhhCCHHH
Q 012677 425 TLSRLAENGTSRA 437 (458)
Q Consensus 425 ~L~~ll~~~~~~~ 437 (458)
.|+.++.++...+
T Consensus 220 ~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 220 HLIAFIEDAEQNA 232 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998764443
No 236
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.16 E-value=0.041 Score=37.05 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=23.5
Q ss_pred cccccccccccCCccC-CCccc--ccHHHHHHHH-hcCCCCCCCCCcc
Q 012677 80 FRCPISGEIMTDPVVL-ANGQT--FDRPCIQRWL-DEGNRTCPQTRQV 123 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l-~cgh~--fc~~ci~~~~-~~~~~~CP~c~~~ 123 (458)
+.|||+...|.-|+.- .|.|. |+..-+.+.. ..+.-.||+|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 5799999999999986 69996 5554433333 3334579999864
No 237
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.09 E-value=0.039 Score=44.43 Aligned_cols=72 Identities=22% Similarity=0.164 Sum_probs=58.1
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA 285 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 285 (458)
.+..|+.+|..+ .|+.+...|+.-|+.++.+-++.+.+++..|+-..++.++.+++++++..|..++..|..
T Consensus 44 llk~L~~lL~~s---~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKS---DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SH---HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC---CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 577888888553 378888899999999998888777777766799999999999999999999999877643
No 238
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.08 E-value=0.047 Score=51.69 Aligned_cols=60 Identities=17% Similarity=0.332 Sum_probs=46.0
Q ss_pred CCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQW 142 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~ 142 (458)
..+-+.||||.+.+.-|+.= +-||..|..|=.+. ...||+|+.++.. +.+..+.+.++.-
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc---HHHHHHHHHHHhc
Confidence 45667899999999999653 57999999997532 4579999999972 3667777776654
No 239
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.74 E-value=0.043 Score=50.89 Aligned_cols=43 Identities=37% Similarity=0.716 Sum_probs=36.2
Q ss_pred cccccccccccc----CCccCCCcccccHHHHHHHHhcCCCCCCCCCc
Q 012677 79 EFRCPISGEIMT----DPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQ 122 (458)
Q Consensus 79 ~~~C~ic~~~~~----~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~ 122 (458)
++.||||.+.+. +|..++|||+.+..|+......+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 445999998664 57778999999999999998876 89999977
No 240
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=93.65 E-value=0.031 Score=57.87 Aligned_cols=65 Identities=17% Similarity=0.400 Sum_probs=49.9
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhc--CCCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE--GNRTCPQTRQVLSHTVLIPNHLVREMISQWC 143 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~--~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~ 143 (458)
...||||.....+|+.+.|-|.||..|+...|.. +...||+|+........+-.....++++++.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~l 87 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKESL 87 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHhc
Confidence 4569999999999999999999999998776542 3458999998777655544555566666554
No 241
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.56 E-value=0.041 Score=50.94 Aligned_cols=49 Identities=27% Similarity=0.556 Sum_probs=38.9
Q ss_pred CCCCccccccccccccC---CccCCCcccccHHHHHHHHhcC--CCCCCCCCcc
Q 012677 75 GLPYEFRCPISGEIMTD---PVVLANGQTFDRPCIQRWLDEG--NRTCPQTRQV 123 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~---p~~l~cgh~fc~~ci~~~~~~~--~~~CP~c~~~ 123 (458)
....-|+||+-.+.-.+ |+.+.|||..-...+.+.-+.| .+.||.|-..
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 35667999998887654 7889999999999998877655 3689999543
No 242
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.53 E-value=0.11 Score=31.01 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=25.0
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 299 MTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 299 i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999864
No 243
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.07 Score=51.47 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=33.4
Q ss_pred CccccccccccccC--C-ccCCCcccccHHHHHHHHhc----C---CCCCCCCCcc
Q 012677 78 YEFRCPISGEIMTD--P-VVLANGQTFDRPCIQRWLDE----G---NRTCPQTRQV 123 (458)
Q Consensus 78 ~~~~C~ic~~~~~~--p-~~l~cgh~fc~~ci~~~~~~----~---~~~CP~c~~~ 123 (458)
.-|.|.||++.... . +.+||+|.||++|...|+.. + .-.||.++.+
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 35779999976643 2 45799999999999999862 2 2268776543
No 244
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.46 E-value=0.4 Score=42.33 Aligned_cols=114 Identities=21% Similarity=0.205 Sum_probs=79.8
Q ss_pred hhhhhHHhhcCCcHHHHHHHHHHHHHHhhC-chhhhhhhhccCChHHHhhccCCC-----CCCCChhHHHHHHHHHHhcc
Q 012677 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKRM-PLFRALFGESTDAIPLLLSPLSPG-----RADTDPGLLEDLITTILNLS 242 (458)
Q Consensus 169 ~l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~~~~~a~~~L~~ls 242 (458)
....+|+.+.+..... ..+..|....+.. ...-..+.+ .||+..|+++|... ....+...+...+.+|..+.
T Consensus 67 ~p~~~i~~L~~~~~~~-~~L~~L~v~Lrt~~~~Wv~~Fl~-~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS-KILKSLRVSLRTNPISWVQEFLE-LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH-HHHHHHHHHHHHS-HHHHHHH-H-HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH-HHHHHHHHHhccCCchHHHHhcc-CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4455777774332221 4455555433333 344556667 79999999988531 11235678888999999999
Q ss_pred cCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012677 243 IHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLS 284 (458)
Q Consensus 243 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 284 (458)
.+......+....+++..|+..|.+++..++..++.+|..++
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888888889888889999999999999999999999998876
No 245
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.43 E-value=0.27 Score=42.19 Aligned_cols=143 Identities=17% Similarity=0.111 Sum_probs=93.9
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhHH
Q 012677 258 IPLLIDSVRT--GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRRA 334 (458)
Q Consensus 258 i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i 334 (458)
+..++..|.. .+.++|..+.-++..+- +..++.. ..-.-+.+-.++..++.+....+..+|..|--... ....+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 3445555553 46788888888887772 3223332 22233344445555555577778888888776544 44555
Q ss_pred -HhhCcHHHHHHHhc--cC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChh-HHhHHHHHHHH
Q 012677 335 -VHAGAVRVILRKIM--EN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCER-NKENCAAILYN 404 (458)
Q Consensus 335 -~~~g~v~~Lv~ll~--~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-~~~~a~~~L~~ 404 (458)
...|.++.++.++. .. ..+..++.+|..=|.+...|..|.+.| ++-|-++++.+.++. ++..|+-.|.-
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHhc
Confidence 45799999999998 33 467778888877777888888888776 888888886555455 67777766653
No 246
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.37 E-value=0.086 Score=34.24 Aligned_cols=39 Identities=18% Similarity=0.477 Sum_probs=23.4
Q ss_pred cccccccccCCccC---CCcccccHHHHHHHHhcCCC-CCCCC
Q 012677 82 CPISGEIMTDPVVL---ANGQTFDRPCIQRWLDEGNR-TCPQT 120 (458)
Q Consensus 82 C~ic~~~~~~p~~l---~cgh~fc~~ci~~~~~~~~~-~CP~c 120 (458)
|.+|.++...-+.= .|+-.++..|+..||..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888888776654 39999999999999985443 59987
No 247
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.32 E-value=0.15 Score=30.40 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSA 285 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 285 (458)
++|.++++++++++++|..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999875
No 248
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=5.3 Score=40.09 Aligned_cols=242 Identities=13% Similarity=0.028 Sum_probs=132.1
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHH-hcCCHHHHHHHHHHHHHhhccC
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSV-RTGTIETRRNAAAALFSLSALD 287 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~ 287 (458)
.|....++..+....++.+..++..|+..|.|.+...+.+..-...- .+..++.-| +..+.++.-.+...|..+...-
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 45555555444433334577889999999999998854333222221 455565544 4447888888888887765433
Q ss_pred cchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccc--hhHHHh--hCcHHHHHHHhccC-CcHHHHHHHHH
Q 012677 288 SNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLEN--KRRAVH--AGAVRVILRKIMEN-SLVDELLAILA 361 (458)
Q Consensus 288 ~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~--~~~i~~--~g~v~~Lv~ll~~~-~~~~~a~~~L~ 361 (458)
.+....-- ..+.-.+..++.+.+++.+.+|..+...|+..... +.-..+ .+...+|+-.+.++ .....|+....
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSEL 411 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHH
Confidence 22221100 22344566788888999999999998888865443 333343 13344444455665 44566777776
Q ss_pred HhcCCHHHHHHHH---h---cCCH------------------HHHHHHHh-------hcCChhHHhHHHHHHHHHhccCc
Q 012677 362 MLSSHQDAIEEIG---E---LGAI------------------PCLLRIIR-------ESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 362 ~La~~~~~~~~i~---~---~g~i------------------~~Lv~ll~-------~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
..|...-.+++.. . .+-. +.+..++. ++.-+.+++.+...-.+....-.
T Consensus 412 ~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~ 491 (533)
T KOG2032|consen 412 RTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLV 491 (533)
T ss_pred HhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhH
Confidence 6665333333221 1 1100 11111111 11224555555555555544333
Q ss_pred hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 411 TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 411 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
..+-......-....+..+.+...+++++.|..++..+.+.
T Consensus 492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~~ 532 (533)
T KOG2032|consen 492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSVK 532 (533)
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhhc
Confidence 22111111122333455556677889999999999888753
No 249
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.23 E-value=0.69 Score=40.77 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=77.3
Q ss_pred CcHHHHHHHhccCCcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHHHHhhc--------CChhHHhHHHHHHHHHhc
Q 012677 338 GAVRVILRKIMENSLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLRIIRES--------TCERNKENCAAILYNICF 407 (458)
Q Consensus 338 g~v~~Lv~ll~~~~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~ll~~~--------~~~~~~~~a~~~L~~L~~ 407 (458)
+....+++.+.+.......+.-|...-. ...=-+.|++.||+..|+++|..- ........++.+|..|..
T Consensus 66 ~~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 4556677777666444333333332222 234467788899999999988631 224678889999999998
Q ss_pred cCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 408 TDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 408 ~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
...+ ...++...+.+..|+..+.+.+..++..|..+|..+|
T Consensus 146 ~~~G-~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYG-LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHH-HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHH-HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 7765 4577878899999999999999999999999999887
No 250
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.20 E-value=4.2 Score=39.16 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=97.4
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhc-CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc---CcchhHhhccCchHHH
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAE-NPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL---DSNKLIIGKLGAMTPL 302 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~---~~~~~~i~~~g~i~~L 302 (458)
....++.++..+.++-.+.-....+.. ...++..+.+.++.|..+-+..|+.++.-|+.. .+....+.+ ...|.|
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L 134 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVL 134 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHH
Confidence 356677777777665433322222211 112566678888888776677777777666544 233444444 357788
Q ss_pred HHHhhcC--ChHHHHHHHHHHHHhcccccc-hhHHHh-hCcHHHHHH--Hhc-cC-----------CcHHHHHHHHHHhc
Q 012677 303 IDLLEEG--HPLAMKDVASAIFSLCILLEN-KRRAVH-AGAVRVILR--KIM-EN-----------SLVDELLAILAMLS 364 (458)
Q Consensus 303 v~lL~~~--~~~~~~~a~~aL~~L~~~~~~-~~~i~~-~g~v~~Lv~--ll~-~~-----------~~~~~a~~~L~~La 364 (458)
.+++.++ .+.++..++.+|.-++..... -..+.+ ...+..+.. .+. ++ .+...|+..-.-|.
T Consensus 135 ~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLl 214 (309)
T PF05004_consen 135 KRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLL 214 (309)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHH
Confidence 8888776 445666666666655442211 111110 012221111 111 11 24555555555554
Q ss_pred C-CHHH-HHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 365 S-HQDA-IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 365 ~-~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
. .+.. ..... ...++.|+.+|.+. +..+|..|-.+|+-|..
T Consensus 215 t~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 215 TTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE 257 (309)
T ss_pred hcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 4 3332 22222 34589999999965 59999988888876643
No 251
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.19 E-value=7.7 Score=39.80 Aligned_cols=107 Identities=16% Similarity=0.066 Sum_probs=63.0
Q ss_pred hhhhhHHhhcCCc--HHHHH---HHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc
Q 012677 169 HLNSLLEKMSSSL--SDQKE---AAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI 243 (458)
Q Consensus 169 ~l~~Lv~~l~~~~--~~~~~---a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~ 243 (458)
++-.+++.+.++. ..+.. .++.+..+..++++.+..+ .|.|-..|++. -.-+.-.++.++..++.
T Consensus 224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~------rpfL~~wls~k----~emV~lE~Ar~v~~~~~ 293 (898)
T COG5240 224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL------RPFLNSWLSDK----FEMVFLEAARAVCALSE 293 (898)
T ss_pred HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH------HHHHHHHhcCc----chhhhHHHHHHHHHHHH
Confidence 4555666665443 22322 2334444555555444332 23444445442 34566667777766664
Q ss_pred CchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 244 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
.. ....+.+. .+..|-.+|+++....|-.|.++|..|+...+
T Consensus 294 ~n-v~~~~~~~--~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 294 EN-VGSQFVDQ--TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred hc-cCHHHHHH--HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 33 23344443 66777788889999999999999999987543
No 252
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.09 E-value=5.3 Score=38.25 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=103.5
Q ss_pred CChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--chh-------Hhhcc
Q 012677 226 TDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKL-------IIGKL 296 (458)
Q Consensus 226 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~-------~i~~~ 296 (458)
.++.+++.|+..|+-++.-+. .++.. .++.+...++.++.+++..|+.++..+..... .-. .....
T Consensus 39 ~~~~vR~~al~cLGl~~Lld~---~~a~~--~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~ 113 (298)
T PF12719_consen 39 SDPAVRELALKCLGLCCLLDK---ELAKE--HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK 113 (298)
T ss_pred CCHHHHHHHHHHHHHHHHhCh---HHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence 388999999999998886654 33332 57778888888899999999999988865331 111 12234
Q ss_pred CchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCC-----cHHHHHHHHH-HhcC-CHHH
Q 012677 297 GAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENS-----LVDELLAILA-MLSS-HQDA 369 (458)
Q Consensus 297 g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~-----~~~~a~~~L~-~La~-~~~~ 369 (458)
..++.+...+.+.+++++..|+..+..|-..+-... ...++..|+-+-.++. -...++.... ..|. ++.+
T Consensus 114 ~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~ 190 (298)
T PF12719_consen 114 SLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN 190 (298)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence 577788888888899999999999999876654333 2345566665555551 2334444444 3455 5556
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 012677 370 IEEIGELGAIPCLLRIIRE 388 (458)
Q Consensus 370 ~~~i~~~g~i~~Lv~ll~~ 388 (458)
+..+ ..+.++.+-.+...
T Consensus 191 Q~~l-~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 191 QERL-AEAFLPTLRTLSNA 208 (298)
T ss_pred HHHH-HHHHHHHHHHHHhC
Confidence 5444 45567887777764
No 253
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.08 E-value=5.3 Score=39.39 Aligned_cols=238 Identities=14% Similarity=0.119 Sum_probs=135.1
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHH-HHhhccCcc
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAAL-FSLSALDSN 289 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L-~~Ls~~~~~ 289 (458)
|.-+++=|.++ ....++..++--|..-+.+++.+..+...| .+..+++.+.. ++..+...++.++ +-|+.+..+
T Consensus 23 v~ylld~l~~~---~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g-~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~ 98 (361)
T PF07814_consen 23 VEYLLDGLESS---SSSSVRRSSLLELASKCADPQFRRQFRAHG-LVKRLFKALSDAPDDDILALATAAILYVLSRDGLN 98 (361)
T ss_pred HHHHHhhcccC---CCccHHHHHHHHHHHHhCCHHHHHHHHHcC-cHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence 66666666632 356788888888888888888999998885 88889988844 4433444444444 334443333
Q ss_pred hhHhhccCchHHHHHHhh--c-----C-------------------------------------ChHHHHHHHHHHHHhc
Q 012677 290 KLIIGKLGAMTPLIDLLE--E-----G-------------------------------------HPLAMKDVASAIFSLC 325 (458)
Q Consensus 290 ~~~i~~~g~i~~Lv~lL~--~-----~-------------------------------------~~~~~~~a~~aL~~L~ 325 (458)
-..+-+.+....++.++. . . ...-+.-|+.+|-.++
T Consensus 99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~ 178 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLV 178 (361)
T ss_pred hhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHH
Confidence 333333444444455554 0 0 0111222333444442
Q ss_pred --------c-------cccchhHHHhhCcHHHHHHHhcc----C--------------CcHHHHHHHHHHhcC-CHHHHH
Q 012677 326 --------I-------LLENKRRAVHAGAVRVILRKIME----N--------------SLVDELLAILAMLSS-HQDAIE 371 (458)
Q Consensus 326 --------~-------~~~~~~~i~~~g~v~~Lv~ll~~----~--------------~~~~~a~~~L~~La~-~~~~~~ 371 (458)
. .+-.+..+...|++..++.++.+ . .....++.+|.+.+. +++++.
T Consensus 179 ~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~ 258 (361)
T PF07814_consen 179 RSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQS 258 (361)
T ss_pred HHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchH
Confidence 0 01134446667899999999862 1 134668899988876 667777
Q ss_pred HHHhc--CCHHHH-HHHHhhc--CChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHh-------h-------h
Q 012677 372 EIGEL--GAIPCL-LRIIRES--TCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA-------E-------N 432 (458)
Q Consensus 372 ~i~~~--g~i~~L-v~ll~~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll-------~-------~ 432 (458)
.+... +.++.+ ..++... ........+++++.||+.+++..+..+.. .+....+..+. . .
T Consensus 259 ~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s-~~l~~~~~~i~~~~~~~~~~~~~~~~~ 337 (361)
T PF07814_consen 259 YLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFAS-PKLGQQLGLIVTSFFCVLSLPNYVPEE 337 (361)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhh-hHhccchHHHHHhhccccccccccccc
Confidence 77553 333333 3333321 12444678999999999988654433332 22212211111 1 1
Q ss_pred CCHHHHHHHHHHHHHHHhhHhh
Q 012677 433 GTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 433 ~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
..-++.--+.++|-||+++.+.
T Consensus 338 ~~~D~~IL~Lg~LINL~E~s~~ 359 (361)
T PF07814_consen 338 SSFDILILALGLLINLVEHSEA 359 (361)
T ss_pred ccchHHHHHHHhHHHheeeCcc
Confidence 1235677788888888877654
No 254
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.97 E-value=1.4 Score=45.27 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=96.3
Q ss_pred chHHHHHHhhcCChHHHHHHHHHHHHhcccccchhH---HHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC---CHHH
Q 012677 298 AMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRR---AVHAGAVRVILRKIMEN--SLVDELLAILAMLSS---HQDA 369 (458)
Q Consensus 298 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~---i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~---~~~~ 369 (458)
.|..++.+|++..+.+++.|+.....|+..-.++.. +...|.| |.+-|.+. ++.-..+.+++.+.+ ....
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 455667788899999999999998888654443332 2223332 34444433 344444444444433 2211
Q ss_pred HHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 370 IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 370 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
+.-+ .|.+|.|.-+|++.+ .+++.+.+..+..||..++... ...+=.-.---|++++.+.+..+++.|...+..++
T Consensus 683 qpPi--~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi-~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 683 QPPI--SGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYI-GVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred CCch--hhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccC-CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 2222 478999999999766 9999999999999999887532 11110112223667778888999999999888887
Q ss_pred hhH
Q 012677 450 KAA 452 (458)
Q Consensus 450 ~~~ 452 (458)
+.-
T Consensus 759 ~ai 761 (975)
T COG5181 759 RAI 761 (975)
T ss_pred hhc
Confidence 653
No 255
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.92 E-value=5.7 Score=39.40 Aligned_cols=127 Identities=9% Similarity=0.142 Sum_probs=94.9
Q ss_pred hhhcCCCCHHHHHHHHhcC---CHHHHHHHHHHHHHhhccCcchh-HhhccCchHHHHHHhh-cC---ChHHHHHHHHHH
Q 012677 250 LVAENPLAIPLLIDSVRTG---TIETRRNAAAALFSLSALDSNKL-IIGKLGAMTPLIDLLE-EG---HPLAMKDVASAI 321 (458)
Q Consensus 250 ~i~~~~~~i~~Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~g~i~~Lv~lL~-~~---~~~~~~~a~~aL 321 (458)
.+++.+.....|..++++. -..+-..|+.++..+..+++..- .|.+.|.++.++..+. .+ +.++....-.+|
T Consensus 100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l 179 (379)
T PF06025_consen 100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVL 179 (379)
T ss_pred cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 3445333566666777765 36788899999999988887654 4556999999999887 43 667778888899
Q ss_pred HHhcccccchhHHHhhCcHHHHHHHhccCC---------cHHHHHHHHHHhcC-CHHHHHHHHhc
Q 012677 322 FSLCILLENKRRAVHAGAVRVILRKIMENS---------LVDELLAILAMLSS-HQDAIEEIGEL 376 (458)
Q Consensus 322 ~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~---------~~~~a~~~L~~La~-~~~~~~~i~~~ 376 (458)
..||.+..+...+.+.+.++.+++++.+++ .....-..+-.|.+ +|.-|..++++
T Consensus 180 ~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ 244 (379)
T PF06025_consen 180 SAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDA 244 (379)
T ss_pred hHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999999999998761 22223344556777 57777777554
No 256
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.89 E-value=4.5 Score=39.35 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=117.9
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chh-H----HHh--hCcHHHHHHHhccCCcHHHHHHHHHHh
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKR-R----AVH--AGAVRVILRKIMENSLVDELLAILAML 363 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~-~----i~~--~g~v~~Lv~ll~~~~~~~~a~~~L~~L 363 (458)
.+...+.+..|+..|..-+-+.++.+.....++-.... ++. . +.. ..++..|+.--..+++.-.+-.+|+..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 45566889999999988899999999999999987653 332 1 222 234555555445558888899999999
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhh--hhhHHHHHHhhhCCHHHHHHH
Q 012677 364 SSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEE--NANGTLSRLAENGTSRAKRKA 441 (458)
Q Consensus 364 a~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--g~~~~L~~ll~~~~~~~~~~A 441 (458)
+.++...+.++....+..+.+.++.+ +-++...|..++..|-.....-....+... .+......|+.+++.-+++++
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 99999999999988899999999965 599999999999998776654444555422 355677888999999999999
Q ss_pred HHHHHHHH
Q 012677 442 NGILERLN 449 (458)
Q Consensus 442 ~~~L~~l~ 449 (458)
..+|..+-
T Consensus 230 lkLL~ell 237 (335)
T PF08569_consen 230 LKLLGELL 237 (335)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 257
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=92.85 E-value=0.13 Score=36.35 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=42.5
Q ss_pred CCCCCCCccCCCCCCccc--HHHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHh
Q 012677 115 RTCPQTRQVLSHTVLIPN--HLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEK 176 (458)
Q Consensus 115 ~~CP~c~~~l~~~~~~~n--~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~ 176 (458)
..||+|+..+..+...++ ...+..|.+|..+ +..+|.+.+.+....+.++ ..++..|+.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~--~~l~~~i~~ 62 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPN--LALKSAIQE 62 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeC--HHHHHHHHh
Confidence 369999999988765554 2358889999987 5678988887766666655 356666654
No 258
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.84 E-value=2.1 Score=37.50 Aligned_cols=112 Identities=22% Similarity=0.177 Sum_probs=79.1
Q ss_pred CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHH
Q 012677 180 SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIP 259 (458)
Q Consensus 180 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~ 259 (458)
++.+|..++..+..++...+.. .+ ..++.+...|.+. ++.++..|+..|..|...+-.+. .|..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve--~~~~~l~~~L~D~----~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VE--PYLPNLYKCLRDE----DPLVRKTALLVLSHLILEDMIKV----KGQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HH--hHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHcCceee----hhhhhH
Confidence 3567888999999999876543 23 5577888888875 89999999999999886543222 232436
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc
Q 012677 260 LLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE 308 (458)
Q Consensus 260 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 308 (458)
.++.++..++++++..|..++..+.... +...+ ...++.++.-|+.
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~~-~~~~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFSELLKKR-NPNII--YNNFPELISSLNN 112 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhc-cchHH--HHHHHHHHHHHhC
Confidence 6888888999999999999999997752 11222 2235555555543
No 259
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=92.68 E-value=0.68 Score=49.55 Aligned_cols=182 Identities=14% Similarity=0.049 Sum_probs=113.7
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch--------------hhhhhhcCCCCHHHHHHHHhcCCHHHHHH
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE--------------NKRLVAENPLAIPLLIDSVRTGTIETRRN 275 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~--------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~ 275 (458)
.....|+++|+.. ++-..+..++.-+..+.+ .|..+.. .++|.|++.+...+...+.+
T Consensus 815 ~ia~klld~Ls~~------~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~--~ivP~l~~~~~t~~~~~K~~ 886 (1030)
T KOG1967|consen 815 EIAEKLLDLLSGP------STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC--DIVPILVSKFETAPGSQKHN 886 (1030)
T ss_pred hHHHHHHHhcCCc------cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH--hhHHHHHHHhccCCccchhH
Confidence 4456788888753 222333444433333322 2333333 38899999888767777777
Q ss_pred HHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---
Q 012677 276 AAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--- 350 (458)
Q Consensus 276 a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--- 350 (458)
=..+|.++-.+- .+..+.. ....|.|++.|+-+|..++..++.++.-+....+.-..---.-.+|.++.+=.+.
T Consensus 887 yl~~LshVl~~v-P~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~ 965 (1030)
T KOG1967|consen 887 YLEALSHVLTNV-PKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNN 965 (1030)
T ss_pred HHHHHHHHHhcC-CHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcc
Confidence 777887776533 3344444 6678888899988999999999998887765443222211123666666665554
Q ss_pred --CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 351 --SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 351 --~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
.+++.|+..|..|.. .|-..-.--+-.++..|.+.|.+.. ..+++.|+.+
T Consensus 966 ~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK-RlVR~eAv~t 1018 (1030)
T KOG1967|consen 966 MMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK-RLVRKEAVDT 1018 (1030)
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH-HHHHHHHHHH
Confidence 257778888888887 4433322233345777888887654 6677777654
No 260
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=18 Score=40.05 Aligned_cols=239 Identities=14% Similarity=0.109 Sum_probs=128.8
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+..|.+.++ .+..+|-.|++-+..++.+.| ..+++ .+|...++++... ++...-..|+-+|..|+...-.
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad--~vi~svid~~~p~---e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD--QVIGSVIDLFNPA---EDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH--HHHHHHHHhcCcC---CchhHHHHHHHHHHHHHhcCCc
Confidence 3444444444 456778889999999998877 22333 4566667755543 2456666888888888765433
Q ss_pred hhhhhcCCCCHHHHHHHHhcC--------CHHHHHHHHHHHHHhhccCcch--hHhhccCchHHHH-HHhhcCChHHHHH
Q 012677 248 KRLVAENPLAIPLLIDSVRTG--------TIETRRNAAAALFSLSALDSNK--LIIGKLGAMTPLI-DLLEEGHPLAMKD 316 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~--------~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~g~i~~Lv-~lL~~~~~~~~~~ 316 (458)
...... .++|.+++-|... ...+|..|+.++..++...... +.+.. .....|+ ..+=+....+|..
T Consensus 414 lps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 414 LPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred chHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHH
Confidence 333333 2777777666432 2568999999998887643221 11111 1122221 2222446678899
Q ss_pred HHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHH-HhcCCHHHHHHHHhcCCHHHHHHH-HhhcCCh
Q 012677 317 VASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILA-MLSSHQDAIEEIGELGAIPCLLRI-IRESTCE 392 (458)
Q Consensus 317 a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~-~La~~~~~~~~i~~~g~i~~Lv~l-l~~~~~~ 392 (458)
|..|+........|..- |++. +.....- ..+.+|-..|. .++..+..++.+.+ .|+.. +.+= +.
T Consensus 491 AsAAlqE~VGR~~n~p~-----Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~ 558 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNFPH-----GISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DV 558 (1133)
T ss_pred HHHHHHHHhccCCCCCC-----chhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cH
Confidence 99998877665544321 1111 1111100 12333322222 22334444443322 22211 3322 58
Q ss_pred hHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCH
Q 012677 393 RNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTS 435 (458)
Q Consensus 393 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 435 (458)
.+++.+.++|..|+...+... . .+..++++.-..+++.
T Consensus 559 ~irelaa~aL~~Ls~~~pk~~----a-~~~L~~lld~~ls~~~ 596 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPKYL----A-DYVLPPLLDSTLSKDA 596 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHHhh----c-ccchhhhhhhhcCCCh
Confidence 899999999999887665332 1 3455555555444443
No 261
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.56 E-value=0.047 Score=49.13 Aligned_cols=59 Identities=20% Similarity=0.375 Sum_probs=38.1
Q ss_pred cccccccccc-cCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 012677 80 FRCPISGEIM-TDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWC 143 (458)
Q Consensus 80 ~~C~ic~~~~-~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~ 143 (458)
..|-.|+.-- .+|..+ .|+|.||..|...-.. ..||.|++++....+..| +...|..|+
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~i~l~~s--lp~~ik~~F 64 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRIIQLNRS--LPTDIKSYF 64 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc---cccccccceeeeeecccc--cchhHHHHc
Confidence 3477776433 566554 7999999999765433 279999999766555444 433444333
No 262
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=92.55 E-value=0.14 Score=42.91 Aligned_cols=49 Identities=14% Similarity=0.323 Sum_probs=35.4
Q ss_pred CCccccccccccccCCccCCCcc-----cccHHHHHHHHhcC-CCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQ-----TFDRPCIQRWLDEG-NRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh-----~fc~~ci~~~~~~~-~~~CP~c~~~l~~ 126 (458)
..+..|-||.+... +..-||.. ..|++|+++|+... ...||.|+.+...
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 34557999988754 34456543 45999999999753 5689999988754
No 263
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=92.53 E-value=0.14 Score=50.66 Aligned_cols=176 Identities=12% Similarity=0.012 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhhccCcchhHhh-ccCchHHHHHHhhcCChHHHHHHHHHHHHhccc--c--cc-hhHHHhh--CcHHHH
Q 012677 272 TRRNAAAALFSLSALDSNKLIIG-KLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL--L--EN-KRRAVHA--GAVRVI 343 (458)
Q Consensus 272 ~~~~a~~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~--~--~~-~~~i~~~--g~v~~L 343 (458)
++..|.+++.-+..++-.+...+ -..+...+...+.+..-..++.+++++.|++.- . ++ +..--+. -.+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 45555555555555554443333 255666667777666777899999999998641 1 22 2221111 122333
Q ss_pred HHHhcc-----CCcHHHHHHHHHHhcCCHH--H--HHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHH
Q 012677 344 LRKIME-----NSLVDELLAILAMLSSHQD--A--IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTR 414 (458)
Q Consensus 344 v~ll~~-----~~~~~~a~~~L~~La~~~~--~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 414 (458)
++.-.. ..++.++.++|.|+...-+ . --.....|.+..++.-.--....+++-+|+.++.||.++..-...
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 333221 1578889999998876211 1 111122344444443333234589999999999999987653221
Q ss_pred HHHHhhhhhHHHHHHhhh-CCHHHHHHHHHHHHH
Q 012677 415 EIMEEENANGTLSRLAEN-GTSRAKRKANGILER 447 (458)
Q Consensus 415 ~~~~~~g~~~~L~~ll~~-~~~~~~~~A~~~L~~ 447 (458)
..-....+.+.|..|+.+ .+-+++.+|+.+|..
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 222223344556666544 467888888888754
No 264
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=92.52 E-value=0.15 Score=36.99 Aligned_cols=48 Identities=27% Similarity=0.467 Sum_probs=23.1
Q ss_pred cccccccccccc-----CCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMT-----DPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~-----~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.-.|-||.+-.- +|.+. .|+.-.|+.|++--.+.++..||.|+.+...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 346999998652 34443 5999999999998888899999999977653
No 265
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.33 E-value=0.7 Score=48.70 Aligned_cols=147 Identities=14% Similarity=0.061 Sum_probs=97.8
Q ss_pred cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH-hcccccchhHHHhhCcHHHHHHHhccC-C--cHHHHHHHHHHh
Q 012677 288 SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS-LCILLENKRRAVHAGAVRVILRKIMEN-S--LVDELLAILAML 363 (458)
Q Consensus 288 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~-L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~--~~~~a~~~L~~L 363 (458)
..+...+..|+.+.|+.+.....+..+-.+..+|.. +.. +..+. ..+++++...+... . -.-.++.+|.||
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGERS----YEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 346667889999999999988888888888888872 221 11111 24566666666544 2 245589999999
Q ss_pred cC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHH
Q 012677 364 SS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRK 440 (458)
Q Consensus 364 a~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~ 440 (458)
++ +...|+.+++.-+++.+-.++... ++..|..++..+.||..++---.+.+++....++.....+..........
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 99 677888898887777766666644 49999999999999998775333344432344444444444333333333
No 266
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=0.12 Score=43.74 Aligned_cols=44 Identities=23% Similarity=0.592 Sum_probs=30.5
Q ss_pred cccccccccCCcc-------CCCcccccHHHHHHHHhc-----CC-----CCCCCCCccCC
Q 012677 82 CPISGEIMTDPVV-------LANGQTFDRPCIQRWLDE-----GN-----RTCPQTRQVLS 125 (458)
Q Consensus 82 C~ic~~~~~~p~~-------l~cgh~fc~~ci~~~~~~-----~~-----~~CP~c~~~l~ 125 (458)
|.||..+--|... ..||..|+.-|+..|+.. ++ ..||.|..++.
T Consensus 168 cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 168 CGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 5566544433222 369999999999999973 11 26999988765
No 267
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=11 Score=40.20 Aligned_cols=205 Identities=11% Similarity=0.174 Sum_probs=127.0
Q ss_pred HHHhhccCCCCCCCChhHHHHHHH-HHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchh
Q 012677 213 PLLLSPLSPGRADTDPGLLEDLIT-TILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKL 291 (458)
Q Consensus 213 ~~Lv~lL~~~~~~~~~~~~~~a~~-~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 291 (458)
.-|..+|.+. ....+..|++ +|..++++.+ +. ...|.+|+-..+.|.++++..---|...+..+.+-.
T Consensus 38 ~dL~~lLdSn----kd~~KleAmKRIia~iA~G~d-----vS--~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA 106 (968)
T KOG1060|consen 38 DDLKQLLDSN----KDSLKLEAMKRIIALIAKGKD-----VS--LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA 106 (968)
T ss_pred HHHHHHHhcc----ccHHHHHHHHHHHHHHhcCCc-----HH--HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce
Confidence 3466666663 3344445554 4555566654 22 267889999999999999987777776666665544
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHH
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQD 368 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~ 368 (458)
.+ -|..+=+-|.++++.+|..|+++|..+ |..++..=++-.+-+...+. -++..|+-+|-.|=+ .++
T Consensus 107 LL----SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 107 LL----SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred ee----eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence 33 355666778889999999999998876 33222221222233344454 367778888888855 677
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 369 AIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 369 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
.+.++. ..+-.+|.+ .++.+.-.|+.+...+|-..- .++ ++-...|..++.+.++=-|-.....|...
T Consensus 177 ~k~qL~-----e~I~~LLaD-~splVvgsAv~AF~evCPerl----dLI--HknyrklC~ll~dvdeWgQvvlI~mL~RY 244 (968)
T KOG1060|consen 177 QKDQLE-----EVIKKLLAD-RSPLVVGSAVMAFEEVCPERL----DLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRY 244 (968)
T ss_pred hHHHHH-----HHHHHHhcC-CCCcchhHHHHHHHHhchhHH----HHh--hHHHHHHHhhccchhhhhHHHHHHHHHHH
Confidence 776653 444556664 568999999999988886432 333 33445555665554444444444444444
Q ss_pred Hh
Q 012677 449 NK 450 (458)
Q Consensus 449 ~~ 450 (458)
+|
T Consensus 245 AR 246 (968)
T KOG1060|consen 245 AR 246 (968)
T ss_pred HH
Confidence 43
No 268
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.99 E-value=6.5 Score=37.63 Aligned_cols=160 Identities=12% Similarity=0.041 Sum_probs=100.8
Q ss_pred cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC--chhhhhhh---
Q 012677 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH--DENKRLVA--- 252 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~--- 252 (458)
+.+...|..|++.|+..+--+... +. ..++.+...++.. +..++..|+.++..+... .+.-....
T Consensus 38 ~~~~~vR~~al~cLGl~~Lld~~~----a~--~~l~l~~~~~~~~----~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~ 107 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCLLDKEL----AK--EHLPLFLQALQKD----DEEVKITALKALFDLLLTHGIDIFDSESDND 107 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHhChHH----HH--HHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence 466889999999999888654432 21 3466677777553 789999999999876432 11111111
Q ss_pred ---cCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc----CChHHHHHHHHHHHHhc
Q 012677 253 ---ENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE----GHPLAMKDVASAIFSLC 325 (458)
Q Consensus 253 ---~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~~L~ 325 (458)
....++..+.+.|.+.+.+++..|+..+..|-....... ...++..|+-+-=+ ++...++--...+-..+
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~ 184 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYA 184 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence 111356677788888899999999999999876552222 13445555443322 23455554445555666
Q ss_pred ccccchhHHHhhCcHHHHHHHhccC
Q 012677 326 ILLENKRRAVHAGAVRVILRKIMEN 350 (458)
Q Consensus 326 ~~~~~~~~i~~~g~v~~Lv~ll~~~ 350 (458)
......+..+..+.++.+-.+...+
T Consensus 185 ~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 185 SSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 6666556666777777777776543
No 269
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.80 E-value=18 Score=39.49 Aligned_cols=236 Identities=16% Similarity=0.159 Sum_probs=128.4
Q ss_pred hhhhhhhHHhhcC--C---cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCC----CChhHHHHHHHH
Q 012677 167 RSHLNSLLEKMSS--S---LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRAD----TDPGLLEDLITT 237 (458)
Q Consensus 167 ~~~l~~Lv~~l~~--~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~----~~~~~~~~a~~~ 237 (458)
.+.+..++..+.+ + .......+..|...+-.-+.||+.+.+ .|+++.|+..|...... ....+.+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~-~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLE-LNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHH-cCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3567777777732 1 222233333444444446899999999 99999999888521111 125677777776
Q ss_pred HHhcccCchh--h---hhhhcCC-------CCHHHHHHHHhcC----CHHHHHHHHHHHHHhhccCcchh-HhhccCchH
Q 012677 238 ILNLSIHDEN--K---RLVAENP-------LAIPLLIDSVRTG----TIETRRNAAAALFSLSALDSNKL-IIGKLGAMT 300 (458)
Q Consensus 238 L~~ls~~~~~--~---~~i~~~~-------~~i~~Lv~lL~~~----~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~g~i~ 300 (458)
+..+...... . ....... ..+..|++.+.+. +..+....+++|-.|+..++.+. .+++. +.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 6655433221 0 0001111 1255566666543 67888999999999988765432 22221 22
Q ss_pred HHHHHhh--cC-ChHHHHHHHHHHHHhcc----cc---cchhHHHhhCcHHHHHHHhccC------------------Cc
Q 012677 301 PLIDLLE--EG-HPLAMKDVASAIFSLCI----LL---ENKRRAVHAGAVRVILRKIMEN------------------SL 352 (458)
Q Consensus 301 ~Lv~lL~--~~-~~~~~~~a~~aL~~L~~----~~---~~~~~i~~~g~v~~Lv~ll~~~------------------~~ 352 (458)
+.+++=+ .. .++- ..-+..+..++. +. .-|..+++.|++...+++|... +.
T Consensus 273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 2222111 11 1111 122344444332 22 2456689999999999988632 22
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 353 VDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 353 ~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
...++.+|..||. ++..+.. +..++++.+-.+=+.+....+-.-|=.+|-.|+.
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 3458889999998 4545544 5566674444433333234444445555555555
No 270
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.70 E-value=0.047 Score=59.91 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=40.0
Q ss_pred CCCcccccccccccc-CCccCCCcccccHHHHHHHHhcCCCCCCCCCccC
Q 012677 76 LPYEFRCPISGEIMT-DPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~-~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l 124 (458)
....+.|+||.++++ ...+.-|||.+|..|+..|+.. +..||.|....
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSIK 1198 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhhh
Confidence 445678999999999 5666789999999999999985 56799998443
No 271
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.48 E-value=4.3 Score=37.43 Aligned_cols=61 Identities=11% Similarity=0.315 Sum_probs=40.8
Q ss_pred CcHHHHHHHhccC----CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 338 GAVRVILRKIMEN----SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 338 g~v~~Lv~ll~~~----~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
-+||.|.+.|.+. .++..|+.+|..++.. .+++.|.+++.+.. +-+++.|.-+|..+-..+
T Consensus 218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~-~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 218 AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEE-RVVRESCEVALDMLEYEN 282 (289)
T ss_pred hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHhc
Confidence 4577777777644 4677788888776542 35777888888543 777777777776654433
No 272
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=7.9 Score=42.59 Aligned_cols=222 Identities=14% Similarity=0.058 Sum_probs=120.0
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCc
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~ 288 (458)
+++..|+..|++ .|..++=.|++.++.++...+ ..+++. ++..+++++... +...-..|+-+|+.|+.-.-
T Consensus 341 ~vie~Lls~l~d----~dt~VrWSaAKg~grvt~rlp--~~Lad~--vi~svid~~~p~e~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 341 FVIEHLLSALSD----TDTVVRWSAAKGLGRVTSRLP--PELADQ--VIGSVIDLFNPAEDDSAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHHhccC----CcchhhHHHHHHHHHHHccCc--HHHHHH--HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC
Confidence 344444444444 477888888888888877766 444443 666777766544 35556678888888876321
Q ss_pred chhHhhccCchHHHHHHhhc--------CChHHHHHHHHHHHHhcccccc--hhHHHhhCcHHHHHHHhccC--CcHHHH
Q 012677 289 NKLIIGKLGAMTPLIDLLEE--------GHPLAMKDVASAIFSLCILLEN--KRRAVHAGAVRVILRKIMEN--SLVDEL 356 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~--------~~~~~~~~a~~aL~~L~~~~~~--~~~i~~~g~v~~Lv~ll~~~--~~~~~a 356 (458)
-..... ..++|.++.-|.- ....+|..|+.+.+.++..-+- -..++..=.-..|+..+.|+ ..+..|
T Consensus 413 Llps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 413 LLPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred cchHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHH
Confidence 111111 2245555554421 1345888899888888764432 12233322223344555676 567777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcC--ChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCC
Q 012677 357 LAILAMLSSHQDAIEEIGELGAIPCLLRIIREST--CERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGT 434 (458)
Q Consensus 357 ~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 434 (458)
.++|..... +.|-.|.=+.++...+ +-..+.++-..|..--...+.-...+ +-..+.+-+.+.+
T Consensus 492 sAAlqE~VG---------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HWd 557 (1133)
T KOG1943|consen 492 SAALQENVG---------RQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHWD 557 (1133)
T ss_pred HHHHHHHhc---------cCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhccccccc
Confidence 777765543 2222222233333211 13334455444443333232211111 1122233355678
Q ss_pred HHHHHHHHHHHHHHHhhHhh
Q 012677 435 SRAKRKANGILERLNKAALI 454 (458)
Q Consensus 435 ~~~~~~A~~~L~~l~~~~~~ 454 (458)
+.+++.|++.|..|+...+.
T Consensus 558 ~~irelaa~aL~~Ls~~~pk 577 (1133)
T KOG1943|consen 558 VKIRELAAYALHKLSLTEPK 577 (1133)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 99999999999998876553
No 273
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.39 E-value=12 Score=38.48 Aligned_cols=264 Identities=11% Similarity=0.030 Sum_probs=147.5
Q ss_pred hhhhHHh--hcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhc-ccCch
Q 012677 170 LNSLLEK--MSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNL-SIHDE 246 (458)
Q Consensus 170 l~~Lv~~--l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~l-s~~~~ 246 (458)
++.|.+- |++|+..|..|=..|.++.+++ +- ..+..|++.|-+. .+++..+-.|.-+|.|- ..+++
T Consensus 6 f~~l~~n~vLspD~n~rl~aE~ql~~l~~~d--F~-------qf~~ll~qvl~d~--ns~~~~Rm~agl~LKN~l~a~d~ 74 (858)
T COG5215 6 FRCLGKNHVLSPDPNARLRAEAQLLELQSGD--FE-------QFISLLVQVLCDL--NSNDQLRMVAGLILKNSLHANDP 74 (858)
T ss_pred HHHHHhcccCCCCCCccccHHHHHHHhcccc--HH-------HHHHHHHHHHhcc--CCcHHHHHHHHHHHhhhhhcCCH
Confidence 3344444 6777777777777777777542 21 1223333333322 12456666666666653 22222
Q ss_pred hhh-hhhcC---------CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcC-ChHHH
Q 012677 247 NKR-LVAEN---------PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEG-HPLAM 314 (458)
Q Consensus 247 ~~~-~i~~~---------~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~ 314 (458)
.+. ..... ..+-......|.++.+..-..|+.++..++..+-. -.. .|.+..++.....+ ....+
T Consensus 75 ~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp---~~~wp~lm~~mv~nvg~eqp~~~k 151 (858)
T COG5215 75 ELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELP---NSLWPGLMEEMVRNVGDEQPVSGK 151 (858)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCc---cccchHHHHHHHHhccccCchHhH
Confidence 111 11110 00112345567777788888888888888764310 011 45566666666555 44678
Q ss_pred HHHHHHHHHhcccccchhHHHhhC-cHHHHH-HHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcC----CHHHHHHH
Q 012677 315 KDVASAIFSLCILLENKRRAVHAG-AVRVIL-RKIMEN---SLVDELLAILAMLSSHQDAIEEIGELG----AIPCLLRI 385 (458)
Q Consensus 315 ~~a~~aL~~L~~~~~~~~~i~~~g-~v~~Lv-~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g----~i~~Lv~l 385 (458)
..++.++.+.|....-...+...+ ++-.++ ..++.+ .++-.++.+|++= ....|..+..++ .++...+.
T Consensus 152 ~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~ds--l~fv~~nf~~E~erNy~mqvvcea 229 (858)
T COG5215 152 CESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDS--LMFVQGNFCYEEERNYFMQVVCEA 229 (858)
T ss_pred HHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHH--HHHHHHhhcchhhhchhheeeehh
Confidence 899999999998766533333333 333333 333443 2445566666651 123333443333 23444555
Q ss_pred HhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 386 IRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 386 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
-+ +.+.+++..|.++|..|..-.-.-....++ ..........+.+.++.+.-+|+..-..+|+.
T Consensus 230 tq-~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd~va~qavEfWsticeE 293 (858)
T COG5215 230 TQ-GNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQNDEVAIQAVEFWSTICEE 293 (858)
T ss_pred cc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 56 456999999999999887755444444444 22334555667788888888888877777754
No 274
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.33 E-value=2.3 Score=39.96 Aligned_cols=172 Identities=17% Similarity=0.195 Sum_probs=104.7
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCC-HHHHHHHHhc----CCHHHHHHHHHHHHHhhccCcchhHhhc-cC-ch
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLA-IPLLIDSVRT----GTIETRRNAAAALFSLSALDSNKLIIGK-LG-AM 299 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~-i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g-~i 299 (458)
..+-+--++-.++-+..++.....+...++. ...+..++.. .+...+..+++++.|+-.+..++..+.. .+ .|
T Consensus 76 p~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i 155 (268)
T PF08324_consen 76 PPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSI 155 (268)
T ss_dssp -CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCH
T ss_pred CCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchH
Confidence 3455666777777777777665555554323 3444455443 3678889999999999998888888776 33 34
Q ss_pred HHHHHHhhcC----ChHHHHHHHHHHHHhccccc-ch-hHHHhhCcHHHHHHHhc----cCCcHHHHHHHHHHhcCCHHH
Q 012677 300 TPLIDLLEEG----HPLAMKDVASAIFSLCILLE-NK-RRAVHAGAVRVILRKIM----ENSLVDELLAILAMLSSHQDA 369 (458)
Q Consensus 300 ~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~~~-~~-~~i~~~g~v~~Lv~ll~----~~~~~~~a~~~L~~La~~~~~ 369 (458)
...+..+... +..++..++.+++|++...- .+ ..-.....+..+++.+. +++...+++.+|++|...+..
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 4444433333 67889999999999976432 22 11122235566666432 236788899999999986666
Q ss_pred HHHHHh-cCCHHHHHHHHhhcCChhHHhHH
Q 012677 370 IEEIGE-LGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 370 ~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
.....+ .|+-..+-..-..+..+++++-+
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 236 AKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 666655 34333333333333335555443
No 275
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.87 E-value=2.6 Score=42.45 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=80.7
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-ch-------------hhhhhhcCCCCHHHHHHHHhcCCHHHHHHH
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DE-------------NKRLVAENPLAIPLLIDSVRTGTIETRRNA 276 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~-------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a 276 (458)
.+..|+.+|.+ +++...|+..+.-+..+ ++ +|.++... .+|.|++-.+..+.+.+.+-
T Consensus 272 ~~~~L~~lL~~------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~--~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 272 LLDKLLELLSS------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ--VLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred HHHHHHHHhCC------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH--HHHHHHHHHhhcChhhHHHH
Confidence 45667777764 46666777777766655 22 14444443 67888888888777788888
Q ss_pred HHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccc
Q 012677 277 AAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 277 ~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 328 (458)
..+|.++..+-+....+-+ ...+|.|++-|+.++.+++..++.+|..+....
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 8899988876554444444 668999999998889999999999999987766
No 276
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=90.77 E-value=0.86 Score=48.79 Aligned_cols=146 Identities=12% Similarity=0.186 Sum_probs=99.8
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
..+|.|+...... +...+..-+.+|.++-.+-+-...+-.-....|.|++.|+-++..+|..+..++.-+......
T Consensus 867 ~ivP~l~~~~~t~----~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 867 DIVPILVSKFETA----PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred hhHHHHHHHhccC----CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 5788888888743 456666777777776655443222222334788888999999999999888888766543322
Q ss_pred hhHhhccCchHHHHHHhhcCC---hHHHHHHHHHHHHhcc-cccchhHHHhhCcHHHHHHHhccC--CcHHHHHHH
Q 012677 290 KLIIGKLGAMTPLIDLLEEGH---PLAMKDVASAIFSLCI-LLENKRRAVHAGAVRVILRKIMEN--SLVDELLAI 359 (458)
Q Consensus 290 ~~~i~~~g~i~~Lv~lL~~~~---~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~ 359 (458)
-..---...||.++.+=++.+ ..+|..|+.+|..|.. .+.+.-.-.+..++..|+..|.++ -+++.|..+
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 211111346777777665554 5789999999999998 555555556677889999999887 467777654
No 277
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=13 Score=39.63 Aligned_cols=255 Identities=16% Similarity=0.121 Sum_probs=135.7
Q ss_pred hhhHHhh-cC-CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 171 NSLLEKM-SS-SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 171 ~~Lv~~l-~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
.+.+..| ++ ..-+..+|...+..+...++.- + .-++..|-.+++++ ....+..|..+|-.++...+.+
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~---l---~pavs~Lq~flssp----~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE---L---APAVSVLQLFLSSP----KVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhh---c---chHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHhCCcc
Confidence 3444444 22 3445667887777776543321 1 12566777777765 7788899999998887644422
Q ss_pred h---------hhhcCCC--CHHHHHHHHhcCCHHHHHHHHHHHHHhhc--cCcchhHhhc-------------cCchHHH
Q 012677 249 R---------LVAENPL--AIPLLIDSVRTGTIETRRNAAAALFSLSA--LDSNKLIIGK-------------LGAMTPL 302 (458)
Q Consensus 249 ~---------~i~~~~~--~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~-------------~g~i~~L 302 (458)
. .+-+.+. ...++.-+|+.|+......-..-+.++.. .|+++..+++ .+.+..|
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 1 1111111 12344556777765555544444444432 2233332221 2344445
Q ss_pred HHHhhc-CChHHHHHHHHHHHHhcc-cccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcC-CHHHHHHHHhcCCH
Q 012677 303 IDLLEE-GHPLAMKDVASAIFSLCI-LLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSS-HQDAIEEIGELGAI 379 (458)
Q Consensus 303 v~lL~~-~~~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i 379 (458)
-.+|++ |.-+-+.....++..+.. .++.+. -++..|...+.+.....-+..+|..|-. .|. ......-+
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~~~i~~rILhlLG~EgP~---a~~Pskyi 468 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEFTQIAVRILHLLGKEGPK---APNPSKYI 468 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccchHHHHHHHHHHhccCCC---CCCcchhh
Confidence 555543 344555555555555544 233333 2455566666666666666666665533 110 00011123
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 380 PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 380 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
..+...+.- .+..++..|+.+|..+....+.-. ....-.|.+.+.+.++.+++.|..+|..+..
T Consensus 469 r~iyNRviL-En~ivRaaAv~alaKfg~~~~~l~------~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 469 RFIYNRVIL-ENAIVRAAAVSALAKFGAQDVVLL------PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHHhhhhhh-hhhhhHHHHHHHHHHHhcCCCCcc------ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 333333332 247788889999999885544321 1222334445566788899999999988873
No 278
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.68 E-value=2.5 Score=43.67 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=73.8
Q ss_pred hhhhhhhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 165 ASRSHLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 165 ~~~~~l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.+.+....++..-+++..+++-|...|..+.+.-|.... .+|..++++..+. |..++..|+..|-.++++
T Consensus 20 ~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~------~Ai~a~~DLcEDe----d~~iR~~aik~lp~~ck~ 89 (556)
T PF05918_consen 20 QHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQE------EAINAQLDLCEDE----DVQIRKQAIKGLPQLCKD 89 (556)
T ss_dssp GGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHH------HHHHHHHHHHT-S----SHHHHHHHHHHGGGG--T
T ss_pred cCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcc----cHHHHHHHHHhHHHHHHh
Confidence 344567778877788888999999999999998887753 5677899999874 899999999999999987
Q ss_pred ch-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 012677 245 DE-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL 286 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 286 (458)
.. .... ++..|+++|.+.+......+-.+|..|-..
T Consensus 90 ~~~~v~k------vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~ 126 (556)
T PF05918_consen 90 NPEHVSK------VADVLVQLLQTDDPVELDAVKNSLMSLLKQ 126 (556)
T ss_dssp --T-HHH------HHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhH------HHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 43 3333 455688999988777666666677666443
No 279
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.66 E-value=7 Score=43.41 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=122.1
Q ss_pred CCcHHHHHHHHHHHHHHhhCchhhhhhhh-ccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch--hhhhhhcCC
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLFRALFGE-STDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE--NKRLVAENP 255 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~ 255 (458)
++...|..+...|..++.. +.......+ .......|.+-+++ .+...+..++.+|..|-...+ ....+..
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs----~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-- 738 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQS----SSSPAQASRLKCLKRLLKLLSAEHCDLIPK-- 738 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccHHHHHHHHH--
Confidence 3567788888888888765 222111111 00122333333333 245666666666665543322 2233322
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhhc----cCcchhHhhccCchHHHHHHhhcC--ChHHHHHH--HHHHHHhccc
Q 012677 256 LAIPLLIDSVRTGTIETRRNAAAALFSLSA----LDSNKLIIGKLGAMTPLIDLLEEG--HPLAMKDV--ASAIFSLCIL 327 (458)
Q Consensus 256 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a--~~aL~~L~~~ 327 (458)
.+|-++-.++..+...+.+|...|..+.. .++..+. ....|...+.++..+ ....+..+ +.++..+...
T Consensus 739 -~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 739 -LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred -HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 34444444566788999999999988873 1111111 112566666666554 33333333 4444444433
Q ss_pred ccchhHHHhh----CcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHH
Q 012677 328 LENKRRAVHA----GAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAA 400 (458)
Q Consensus 328 ~~~~~~i~~~----g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 400 (458)
..+ +.+. +.+..+...|.+. .++..|+..+..++. .|+..-.--..-.++.+..++++.. ..++...-.
T Consensus 816 ~~~---~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-~~~r~Kvr~ 891 (1176)
T KOG1248|consen 816 FKN---ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-IKVRKKVRL 891 (1176)
T ss_pred Hhc---cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-HHHHHHHHH
Confidence 332 2333 3444444455544 688889999988877 5655444444446888888888644 888888888
Q ss_pred HHHHHhccCc
Q 012677 401 ILYNICFTDR 410 (458)
Q Consensus 401 ~L~~L~~~~~ 410 (458)
.|-.|.....
T Consensus 892 LlekLirkfg 901 (1176)
T KOG1248|consen 892 LLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHhC
Confidence 9988887554
No 280
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.49 Score=41.82 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=36.4
Q ss_pred cccccccccc--CCccCCCcccccHHHHHHHHhc-------CCCCCCCCCccCCC
Q 012677 81 RCPISGEIMT--DPVVLANGQTFDRPCIQRWLDE-------GNRTCPQTRQVLSH 126 (458)
Q Consensus 81 ~C~ic~~~~~--~p~~l~cgh~fc~~ci~~~~~~-------~~~~CP~c~~~l~~ 126 (458)
.|.+|...+. |-+.+.|=|.|+..|+.+|-.. ....||.|..++-.
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 5999998774 5677899999999999999763 12379999887644
No 281
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.43 E-value=0.18 Score=47.32 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=38.2
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhc-CCCCCCCCCccCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE-GNRTCPQTRQVLS 125 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~-~~~~CP~c~~~l~ 125 (458)
.+++..|-||-+-..--..+||||..|..|-.+.-.- ....||.|+..-.
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 4567789999988887778999999999996554221 1357999998753
No 282
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=90.22 E-value=0.71 Score=43.47 Aligned_cols=152 Identities=19% Similarity=0.183 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhccC-ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCC-CHHHH
Q 012677 184 QKEAAKELRLLTKRMPLFRALFGESTD-AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPL-AIPLL 261 (458)
Q Consensus 184 ~~~a~~~L~~l~~~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~-~i~~L 261 (458)
+--++..++.++.+ +..-..+....+ ....+..++...........+-.+++++.|+-.+...+..+....+ .+...
T Consensus 80 ~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~ 158 (268)
T PF08324_consen 80 RFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILEL 158 (268)
T ss_dssp -HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHH
T ss_pred chhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHH
Confidence 44566666655553 444334433122 2455555554443334678888899999999999988888887653 23333
Q ss_pred HHHHhcC----CHHHHHHHHHHHHHhhccCcchh--HhhccCchHHHHHHhhc--CChHHHHHHHHHHHHhcccccchhH
Q 012677 262 IDSVRTG----TIETRRNAAAALFSLSALDSNKL--IIGKLGAMTPLIDLLEE--GHPLAMKDVASAIFSLCILLENKRR 333 (458)
Q Consensus 262 v~lL~~~----~~~~~~~a~~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~ 333 (458)
+..+... +..++..++.++.|++..--... .-.....+..++..+.. .++++...++.||.+|...++....
T Consensus 159 ~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 159 LSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp CHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence 3333333 68899999999999986431111 11112245555664433 4899999999999999977765555
Q ss_pred HHh
Q 012677 334 AVH 336 (458)
Q Consensus 334 i~~ 336 (458)
...
T Consensus 239 ~~~ 241 (268)
T PF08324_consen 239 LAK 241 (268)
T ss_dssp HCC
T ss_pred HHH
Confidence 544
No 283
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.19 E-value=20 Score=38.06 Aligned_cols=231 Identities=14% Similarity=0.068 Sum_probs=126.0
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHH
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPL 260 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~ 260 (458)
...|..-++.|+..+..+|.-+ .-.|..+..+|+++ +..+.-.|+..|..++.++...+..+. .
T Consensus 220 ~~LqlViVE~Irkv~~~~p~~~------~~~i~~i~~lL~st----ssaV~fEaa~tlv~lS~~p~alk~Aa~------~ 283 (948)
T KOG1058|consen 220 DSLQLVIVELIRKVCLANPAEK------ARYIRCIYNLLSST----SSAVIFEAAGTLVTLSNDPTALKAAAS------T 283 (948)
T ss_pred HHHHHHHHHHHHHHHhcCHHHh------hHHHHHHHHHHhcC----CchhhhhhcceEEEccCCHHHHHHHHH------H
Confidence 4456666677777776555443 34577888888875 668888888888888866553333222 2
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCc
Q 012677 261 LIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGA 339 (458)
Q Consensus 261 Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~ 339 (458)
+++++.. ++..++--...-|..+. .+-+.+. .|.+--++++|++++.+++..++.....|+.+...
T Consensus 284 ~i~l~~kesdnnvklIvldrl~~l~---~~~~~il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv--------- 350 (948)
T KOG1058|consen 284 YIDLLVKESDNNVKLIVLDRLSELK---ALHEKIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV--------- 350 (948)
T ss_pred HHHHHHhccCcchhhhhHHHHHHHh---hhhHHHH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH---------
Confidence 3333322 22222222222233332 1111222 23455566788888889999998888887665432
Q ss_pred HHHHHHHhc-------------cCCcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHH
Q 012677 340 VRVILRKIM-------------ENSLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNI 405 (458)
Q Consensus 340 v~~Lv~ll~-------------~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 405 (458)
.-++++|. .+..+..-+.+|...+. .|+....+ |+.|++.+.+.. +......+..+...
T Consensus 351 -ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatv-----V~~ll~fisD~N-~~aas~vl~FvrE~ 423 (948)
T KOG1058|consen 351 -EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATV-----VSLLLDFISDSN-EAAASDVLMFVREA 423 (948)
T ss_pred -HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHH-----HHHHHHHhccCC-HHHHHHHHHHHHHH
Confidence 11222221 01345666777777766 67665554 788899998653 55444444444443
Q ss_pred hccCchhHHHHHHhhhhhHHHHHHhh-hCCHHHHHHHHHHHHHHHhhHh
Q 012677 406 CFTDRTRTREIMEEENANGTLSRLAE-NGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
-...++ .+. ..+..|+.-+. --+..+-+-|.|++.-.|....
T Consensus 424 iek~p~-Lr~-----~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 424 IEKFPN-LRA-----SIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHhCch-HHH-----HHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 333332 222 22333333222 2345566677777766665443
No 284
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.97 E-value=0.2 Score=49.68 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=32.7
Q ss_pred Ccccccccc-ccccCC---ccCCCcccccHHHHHHHHhc-----CCCCCCC--CCccCCC
Q 012677 78 YEFRCPISG-EIMTDP---VVLANGQTFDRPCIQRWLDE-----GNRTCPQ--TRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~-~~~~~p---~~l~cgh~fc~~ci~~~~~~-----~~~~CP~--c~~~l~~ 126 (458)
...+|.||+ +.+... .+..|||.||..|+.+++.. ....||. |...++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence 356899999 443321 23469999999999999873 2346776 4444544
No 285
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=89.67 E-value=2.6 Score=36.10 Aligned_cols=144 Identities=15% Similarity=0.048 Sum_probs=82.0
Q ss_pred hhhhHHhhc---CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-c
Q 012677 170 LNSLLEKMS---SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-D 245 (458)
Q Consensus 170 l~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~ 245 (458)
+..++..|. .+.+.|..+.-.+..+- +..+..+.+ -.-..+-..+..+ +.+....+..++..+=-. +
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~--~~~~~i~~~~~~~----~~d~~i~~~~~l~~lfp~~~ 75 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE--KISDFIESLLDEG----EMDSLIIAFSALTALFPGPP 75 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHCCH----HCCHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH--HHHHHHHHHHccc----cchhHHHHHHHHHHHhCCCH
Confidence 445555553 24666766666665553 223333222 1112222333332 334555566666554333 3
Q ss_pred hhhhhhhcCCCCHHHHHHHHh--cCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC-ChH-HHHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVR--TGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG-HPL-AMKDVASAI 321 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~-~~~~a~~aL 321 (458)
+....+....|+.+.++.+.. +.+...+..++.+|..=+. ++++...+...+++.|-.+++.+ +.. ++..|+..|
T Consensus 76 dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 76 DVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 344555555579999999998 6677788877776665544 55544444444699999999654 555 788888777
Q ss_pred HH
Q 012677 322 FS 323 (458)
Q Consensus 322 ~~ 323 (458)
..
T Consensus 155 ~K 156 (157)
T PF11701_consen 155 CK 156 (157)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 286
>PHA02862 5L protein; Provisional
Probab=89.59 E-value=0.29 Score=40.24 Aligned_cols=46 Identities=15% Similarity=0.353 Sum_probs=34.0
Q ss_pred cccccccccccCCccCCCc-----ccccHHHHHHHHhc-CCCCCCCCCccCCC
Q 012677 80 FRCPISGEIMTDPVVLANG-----QTFDRPCIQRWLDE-GNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cg-----h~fc~~ci~~~~~~-~~~~CP~c~~~l~~ 126 (458)
..|=||.+.-.+. .-||. ...|+.|+++|++. +...||.|+.+...
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3589999876544 35654 34799999999974 34589999998754
No 287
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.35 E-value=4.3 Score=43.49 Aligned_cols=172 Identities=13% Similarity=0.129 Sum_probs=104.6
Q ss_pred hcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHH
Q 012677 266 RTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILR 345 (458)
Q Consensus 266 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ 345 (458)
..+-..++..+...|..+....+.+..+...+++...+..|++.++-+--+|...+..||.. .....+|-|.+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e 809 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE 809 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence 33446678888888888877666666777788999999999998888888888877777643 33456666666
Q ss_pred -HhccC-----CcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHH
Q 012677 346 -KIMEN-----SLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIM 417 (458)
Q Consensus 346 -ll~~~-----~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 417 (458)
..+.. +.+-+.-.++.+++. .+-...... -.+...+..++++ +...+..+++.|.+||..........+
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 33322 222233345555443 221111111 1245555556643 366688899999998875542222222
Q ss_pred HhhhhhHHHHHHhh-hCCHHHHHHHHHHHHHHH
Q 012677 418 EEENANGTLSRLAE-NGTSRAKRKANGILERLN 449 (458)
Q Consensus 418 ~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~l~ 449 (458)
......++.+.. +|++-+|+.|+.++..+-
T Consensus 887 --~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 887 --HEVLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred --HHHHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 123334444443 567788888888887654
No 288
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=89.00 E-value=1.1 Score=40.73 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHhcccCchhhhhhhcCCCCHH-------HHHHHHhc-CCHHHHHHHHHHHHHhhccCcchh-Hhh-ccC
Q 012677 228 PGLLEDLITTILNLSIHDENKRLVAENPLAIP-------LLIDSVRT-GTIETRRNAAAALFSLSALDSNKL-IIG-KLG 297 (458)
Q Consensus 228 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~-------~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~-~i~-~~g 297 (458)
..-+..|+.+|..|+..+.|-..+...+ -.+ .|+++|.. ++.-.|+.|+.+|.+|+..++... .+. +.+
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTp-p~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATP-PFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCC-CHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 4668999999999999999988888775 332 34444443 578899999999999999886633 343 488
Q ss_pred chHHHHHHhhcCC
Q 012677 298 AMTPLIDLLEEGH 310 (458)
Q Consensus 298 ~i~~Lv~lL~~~~ 310 (458)
+|..|+..+.+..
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999997753
No 289
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=88.88 E-value=10 Score=42.35 Aligned_cols=138 Identities=12% Similarity=0.101 Sum_probs=87.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc----cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhh
Q 012677 262 IDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK----LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHA 337 (458)
Q Consensus 262 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~ 337 (458)
+.+|..+.+-++..-...|.-|+. ..++ .=.+..|+..|++.+...|..=-..|..++..-.-+ -++.
T Consensus 584 ~sLlsd~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~se 655 (1431)
T KOG1240|consen 584 SSLLSDSPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSE 655 (1431)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHH
Confidence 344555555666655555555543 2332 226778889998888877766555555555443322 2678
Q ss_pred CcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 338 GAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 338 g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
+.+|.|.+-|.++ -+..+|+..|..|+...--++..+-. .+....-+|-++ +.=++..++.++..++..-
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~-i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD-ILQDVLPLLCHP-NLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH-HHHhhhhheeCc-hHHHHHHHHHHHHHHHhhh
Confidence 8999999999988 47888999999888755444333211 123333444444 4888999999998877543
No 290
>PHA03096 p28-like protein; Provisional
Probab=88.58 E-value=0.28 Score=46.20 Aligned_cols=44 Identities=27% Similarity=0.519 Sum_probs=30.0
Q ss_pred cccccccccccC-Cc------cC-CCcccccHHHHHHHHhcC--CCCCCCCCcc
Q 012677 80 FRCPISGEIMTD-PV------VL-ANGQTFDRPCIQRWLDEG--NRTCPQTRQV 123 (458)
Q Consensus 80 ~~C~ic~~~~~~-p~------~l-~cgh~fc~~ci~~~~~~~--~~~CP~c~~~ 123 (458)
-.|.||++...+ |. ++ .|.|.||..||..|-... ..+||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 459999975432 21 23 599999999999998743 2356666543
No 291
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=88.54 E-value=0.65 Score=45.10 Aligned_cols=32 Identities=22% Similarity=0.584 Sum_probs=23.2
Q ss_pred CCcccc-----cHHHHHHHHhc------------CCCCCCCCCccCCCC
Q 012677 96 ANGQTF-----DRPCIQRWLDE------------GNRTCPQTRQVLSHT 127 (458)
Q Consensus 96 ~cgh~f-----c~~ci~~~~~~------------~~~~CP~c~~~l~~~ 127 (458)
+|+..| |..|+-+||.. +.-.||+||+.+.-.
T Consensus 305 ~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 305 PCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred CCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 566666 55899999863 234899999987543
No 292
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=88.46 E-value=0.81 Score=45.52 Aligned_cols=179 Identities=11% Similarity=0.026 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc--C--cchhHhhc--cC-chHHH
Q 012677 230 LLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL--D--SNKLIIGK--LG-AMTPL 302 (458)
Q Consensus 230 ~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~--~~~~~i~~--~g-~i~~L 302 (458)
+...|..++.-+..|+..+.-..-.......+...|.+.....|+.+++++.|++.. + .+-....+ .| .+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 344555555555555543322111111344555666666677899999999998642 1 22111111 11 23333
Q ss_pred HHHhh---cCChHHHHHHHHHHHHhcccccchh----HHHhhCcHHHHHHHhc-cC--CcHHHHHHHHHHhcCCHHHHHH
Q 012677 303 IDLLE---EGHPLAMKDVASAIFSLCILLENKR----RAVHAGAVRVILRKIM-EN--SLVDELLAILAMLSSHQDAIEE 372 (458)
Q Consensus 303 v~lL~---~~~~~~~~~a~~aL~~L~~~~~~~~----~i~~~g~v~~Lv~ll~-~~--~~~~~a~~~L~~La~~~~~~~~ 372 (458)
...-. -.+.+++.+|.++|.|+...-+... .....|.+..++.-.- .+ +++-+++-++.||-+++..+-+
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 33222 2367899999999999875432111 1222333333333222 22 6899999999999998765322
Q ss_pred H--HhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 373 I--GELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 373 i--~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
= ...-+.+.|..++.+..+-+++.+|+++|..-...
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 2 22235788889998777899999999999876653
No 293
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.30 E-value=3.3 Score=37.17 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCC-CCChhHHHHHHHHHHhcccCch-h-hhhhhcCCCCHHHH
Q 012677 185 KEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRA-DTDPGLLEDLITTILNLSIHDE-N-KRLVAENPLAIPLL 261 (458)
Q Consensus 185 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~~~~~a~~~L~~ls~~~~-~-~~~i~~~~~~i~~L 261 (458)
..|+..|.-++. .|+.+..+.+ +..--.|-.+|...++ +.-...+..+++.++.|.++++ . ...+... .++|..
T Consensus 118 cnaL~lLQclaS-hPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT-eivPLc 194 (315)
T COG5209 118 CNALNLLQCLAS-HPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT-EIVPLC 194 (315)
T ss_pred HHHHHHHHHHhc-Ccchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh-hHHHHH
Confidence 467777777776 5888888887 5543333344433211 1235677789999999998865 3 3344444 599999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc--------cCchHHHHH-HhhcCChHHHHHHHHHHHHhcccccchh
Q 012677 262 IDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK--------LGAMTPLID-LLEEGHPLAMKDVASAIFSLCILLENKR 332 (458)
Q Consensus 262 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--------~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~~~~ 332 (458)
++++..|+.-.+..|+.++..+-.+|.+-..+.+ ..++..++. +.+.+.....+.++++-..|+..+..|.
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHH
Confidence 9999999999999999998888887765444322 123333443 3345677788888888888877776665
Q ss_pred HH
Q 012677 333 RA 334 (458)
Q Consensus 333 ~i 334 (458)
.+
T Consensus 275 lL 276 (315)
T COG5209 275 LL 276 (315)
T ss_pred HH
Confidence 43
No 294
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=88.29 E-value=0.33 Score=32.95 Aligned_cols=30 Identities=27% Similarity=0.780 Sum_probs=23.7
Q ss_pred ccccccccccc--cCCccC--CCcccccHHHHHH
Q 012677 79 EFRCPISGEIM--TDPVVL--ANGQTFDRPCIQR 108 (458)
Q Consensus 79 ~~~C~ic~~~~--~~p~~l--~cgh~fc~~ci~~ 108 (458)
.-.|++|.+.+ .|.++. .||-.|+|.|..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34699999999 566655 4999999999653
No 295
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=88.24 E-value=0.034 Score=39.79 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=23.9
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
+..||.|...|..- -||.+|..|-..+... ..||.|++++..
T Consensus 1 e~~CP~C~~~L~~~----~~~~~C~~C~~~~~~~--a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----GGHYHCEACQKDYKKE--AFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEEE----TTEEEETTT--EEEEE--EE-TTT-SB-EE
T ss_pred CCcCCCCCCccEEe----CCEEECccccccceec--ccCCCcccHHHH
Confidence 35799999886532 2888999997765543 369999998753
No 296
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.16 E-value=14 Score=42.29 Aligned_cols=224 Identities=14% Similarity=0.057 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHH---HHHhhc---cCcc--hhHhhccCch
Q 012677 228 PGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAA---LFSLSA---LDSN--KLIIGKLGAM 299 (458)
Q Consensus 228 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~---L~~Ls~---~~~~--~~~i~~~g~i 299 (458)
=.+++.++.+|..|-.+.++-...-.-......+.+..+.=...+|+.|-.+ |..|+. +..+ +..-.-..++
T Consensus 1053 wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIIL 1132 (1702)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHH
Confidence 3788999999998887755322221111234444555444345666666544 444432 1111 1111112244
Q ss_pred HHHHH--HhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-------------CcHHHHHHHHHH-h
Q 012677 300 TPLID--LLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-------------SLVDELLAILAM-L 363 (458)
Q Consensus 300 ~~Lv~--lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-------------~~~~~a~~~L~~-L 363 (458)
|.|+. ++ +.-++++..++.++..|+.+.....+---...+|.|++....- .....++..++. .
T Consensus 1133 PfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~ 1211 (1702)
T KOG0915|consen 1133 PFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASA 1211 (1702)
T ss_pred HHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhh
Confidence 44443 33 4467899999999999988776433333345677777666532 112223333321 1
Q ss_pred cCCHHHHHHH------Hh----cCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC
Q 012677 364 SSHQDAIEEI------GE----LGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG 433 (458)
Q Consensus 364 a~~~~~~~~i------~~----~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 433 (458)
+.+...=+.| ++ ...+|.+.++++.+-.-..+..+...+.-|+..-.....-.. ...+.++.-...+-
T Consensus 1212 aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s--gKll~al~~g~~dR 1289 (1702)
T KOG0915|consen 1212 AKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS--GKLLRALFPGAKDR 1289 (1702)
T ss_pred hcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch--hHHHHHHhhccccc
Confidence 2211111111 11 134677788888655566666777777766654322111111 11222222223334
Q ss_pred CHHHHHHHHHHHHHHHhhHhh
Q 012677 434 TSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 434 ~~~~~~~A~~~L~~l~~~~~~ 454 (458)
++.+++..+.+...|.++...
T Consensus 1290 Nesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1290 NESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred cHHHHHHHHHHHHHHHhcCCh
Confidence 566676666666666655443
No 297
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=88.09 E-value=15 Score=38.41 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=97.9
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhh--ccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCC-C
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGE--STDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPL-A 257 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~-~ 257 (458)
.+.+--|+..|+.+..+...+-..+-. ....+..++..+. .++..+..+++.|.|+-.+.-++..+...-. .
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-----~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i 632 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-----ADPANQLLVVRCLANLFSNPAGRELFMSRLESI 632 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-----cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 455666788888888766655444432 0234445555555 2678888999999999988777776665411 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhc--cCcchhHhhccCchHHHHHHhhc-----CChHHHHHHHHHHHHhcccccc
Q 012677 258 IPLLIDSVRTGTIETRRNAAAALFSLSA--LDSNKLIIGKLGAMTPLIDLLEE-----GHPLAMKDVASAIFSLCILLEN 330 (458)
Q Consensus 258 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~~L~~~~~~ 330 (458)
+..++..=..++..++.+.+....|++. ..++-+ .|+.+.|...+.. .+.++...++.||.+|+..+..
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~ 708 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS 708 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHH
Confidence 1212222222345666666666666653 222222 4555555555543 2445677788899999999988
Q ss_pred hhHHHhhCcHHHHHHHhccC
Q 012677 331 KRRAVHAGAVRVILRKIMEN 350 (458)
Q Consensus 331 ~~~i~~~g~v~~Lv~ll~~~ 350 (458)
..++...-.+..++.-+++.
T Consensus 709 ~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 709 VIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHHHHHhcCHHHHHHHHHHh
Confidence 77777766667777666543
No 298
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=88.06 E-value=38 Score=36.86 Aligned_cols=218 Identities=12% Similarity=0.057 Sum_probs=130.5
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHH
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPL 260 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~ 260 (458)
+..-..+...+...+....-+...+.. .....++.+... ..+.++..|+.++...++... ..-...+++..
T Consensus 464 P~Ll~Ra~~~i~~fs~~~~~~~~~~~~---fl~~~v~~l~~~---~~~~~ki~a~~~~~~~~~~~v---l~~~~p~ild~ 534 (1005)
T KOG2274|consen 464 PFLLLRAFLTISKFSSSTVINPQLLQH---FLNATVNALTMD---VPPPVKISAVRAFCGYCKVKV---LLSLQPMILDG 534 (1005)
T ss_pred HHHHHHHHHHHHHHHhhhccchhHHHH---HHHHHHHhhccC---CCCchhHHHHHHHHhccCcee---ccccchHHHHH
Confidence 444446777776666543322222211 223334444332 345667777777766552211 11112345666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhh--cCChHHHHHHHHHHHHhcccccchhHHHhhC
Q 012677 261 LIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLE--EGHPLAMKDVASAIFSLCILLENKRRAVHAG 338 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g 338 (458)
|.++......++......+|...+..|.......+.-..|....++. +.+|.+...+-..+..|+....+...+ ..-
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHH
Confidence 67776667788888888888888888766666666777787777663 357877777777777777644333333 334
Q ss_pred cHHHHHHHhccC------CcHHHHHHHHHHhcCC--HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 339 AVRVILRKIMEN------SLVDELLAILAMLSSH--QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 339 ~v~~Lv~ll~~~------~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
.+|.|++.|..+ ....-++.+|..+.+. ++--..++ .-+.|++.+++-++++..+-.++-.+|..+-...
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 789999999754 3455677777766551 22222222 2246777777766666777777878887776554
No 299
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=88.05 E-value=12 Score=38.98 Aligned_cols=167 Identities=11% Similarity=0.120 Sum_probs=95.3
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcC---CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhcc-CchHHH
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAEN---PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKL-GAMTPL 302 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~---~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~L 302 (458)
..+.+--|+-+|+.+..|...-..+... ...+..++..+. +.+.-+..+++.|.|+-.+..+++.+... ..+-..
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~ 635 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDP 635 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh
Confidence 4556667777887777776543333321 113333444443 45777888999999998887777766552 111111
Q ss_pred HHHhhcC-ChHHHHHHHHHHHHhcc--cccchhHHHhhCcHHHHHHHhc---cC----CcHHHHHHHHHHhcCCHHHHHH
Q 012677 303 IDLLEEG-HPLAMKDVASAIFSLCI--LLENKRRAVHAGAVRVILRKIM---EN----SLVDELLAILAMLSSHQDAIEE 372 (458)
Q Consensus 303 v~lL~~~-~~~~~~~a~~aL~~L~~--~~~~~~~i~~~g~v~~Lv~ll~---~~----~~~~~a~~~L~~La~~~~~~~~ 372 (458)
+.-.+.. +..++...+....|++. ...+-+ .|+.+.|..++. ++ +...+++.+|.+|+..+....+
T Consensus 636 ~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~ 711 (745)
T KOG0301|consen 636 VIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ 711 (745)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence 2222333 34455444444445432 222221 344555444443 22 2345688899999998888888
Q ss_pred HHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 373 IGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 373 i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
+...-.+..+++-++...+.......
T Consensus 712 ~A~~~~v~sia~~~~~~~~~~~~k~~ 737 (745)
T KOG0301|consen 712 LAKNRSVDSIAKKLKEAVSNPSGKNI 737 (745)
T ss_pred HHHhcCHHHHHHHHHHhccCchhhHH
Confidence 87776788888888854333333333
No 300
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=87.84 E-value=0.26 Score=32.66 Aligned_cols=39 Identities=33% Similarity=0.718 Sum_probs=23.5
Q ss_pred cccccccccC--CccCCCcc-----cccHHHHHHHHhc-CCCCCCCC
Q 012677 82 CPISGEIMTD--PVVLANGQ-----TFDRPCIQRWLDE-GNRTCPQT 120 (458)
Q Consensus 82 C~ic~~~~~~--p~~l~cgh-----~fc~~ci~~~~~~-~~~~CP~c 120 (458)
|-||++.-.+ |.+.||+- ..|+.|+.+|+.. +...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5677765432 56677642 4689999999974 45578887
No 301
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.73 E-value=18 Score=39.15 Aligned_cols=175 Identities=10% Similarity=0.082 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHH
Q 012677 269 TIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRK 346 (458)
Q Consensus 269 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~l 346 (458)
.+.++..|+.++...+ ..+.+.. .+.++.|.++....+.++......+|...++.+.......+..+.|.++.+
T Consensus 504 ~~~~ki~a~~~~~~~~----~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~l 579 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYC----KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINL 579 (1005)
T ss_pred CCchhHHHHHHHHhcc----CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHH
Confidence 4556666666665555 2222322 678888888888778899999999999999988877777777778877777
Q ss_pred hc----cCCcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcC---ChhHHhHHHHHHHHHhccCchhHHHHHHh
Q 012677 347 IM----ENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIREST---CERNKENCAAILYNICFTDRTRTREIMEE 419 (458)
Q Consensus 347 l~----~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 419 (458)
.. ++-+...+-.++..|+....+..-+.+ -.||.|+..|.... ......-|+.+|..+..+.+.-....+.
T Consensus 580 F~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~- 657 (1005)
T KOG2274|consen 580 FLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI- 657 (1005)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-
Confidence 64 223445555566666553333333322 25899999997421 2455667777777666655533333332
Q ss_pred hhhhHHHHHHh-hhCCHHHHHHHHHHHHHHH
Q 012677 420 ENANGTLSRLA-ENGTSRAKRKANGILERLN 449 (458)
Q Consensus 420 ~g~~~~L~~ll-~~~~~~~~~~A~~~L~~l~ 449 (458)
.-+.|++.+.. ++++..+-+.+-.+|+.+-
T Consensus 658 ~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 658 CYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 23556666654 5666677777777776554
No 302
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.34 E-value=17 Score=39.23 Aligned_cols=209 Identities=14% Similarity=0.079 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHH-Hhh
Q 012677 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLID-LLE 307 (458)
Q Consensus 229 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~ 307 (458)
.++..++..|..+.....-...+... +++......|++.+.-+--+|+..+..|+.. .....+|-|.. ..+
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~e-kvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y~s 813 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGE-KVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEYLS 813 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHH-HHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHHHh
Confidence 34445555555555433222233332 3555566666666666666666655555432 22344555555 222
Q ss_pred cC---ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHH--HHHHHHhcCCHH
Q 012677 308 EG---HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQD--AIEEIGELGAIP 380 (458)
Q Consensus 308 ~~---~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~--~~~~i~~~g~i~ 380 (458)
.. .++.+...-.|+.++......-..-..+-.+...+..++++ ..+..++++|++||.--+ +...+. ..+.
T Consensus 814 ~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~ 891 (982)
T KOG4653|consen 814 EKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EVLQ 891 (982)
T ss_pred cccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HHHH
Confidence 21 12333334456665544322111111123444455555655 458889999999987222 222232 2356
Q ss_pred HHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHH---hhh-CCHHHHHHHHHHHHHH
Q 012677 381 CLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRL---AEN-GTSRAKRKANGILERL 448 (458)
Q Consensus 381 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~l---l~~-~~~~~~~~A~~~L~~l 448 (458)
.++.+.+.+++.-++..|+.++..+-.+.+...-.+.+.. ..+..-.+ ... .++..+-.|...+..+
T Consensus 892 ~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~-l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 892 LILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLL-LIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 6667777666789999999999998887665444444322 33333332 222 3445666666555444
No 303
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=87.07 E-value=25 Score=34.90 Aligned_cols=116 Identities=12% Similarity=0.158 Sum_probs=81.7
Q ss_pred cCchHHHHHHhhcC---ChHHHHHHHHHHHHhcccccc-hhHHHhhCcHHHHHHHhc-cC-----CcHHHHHHHHHHhcC
Q 012677 296 LGAMTPLIDLLEEG---HPLAMKDVASAIFSLCILLEN-KRRAVHAGAVRVILRKIM-EN-----SLVDELLAILAMLSS 365 (458)
Q Consensus 296 ~g~i~~Lv~lL~~~---~~~~~~~a~~aL~~L~~~~~~-~~~i~~~g~v~~Lv~ll~-~~-----~~~~~a~~~L~~La~ 365 (458)
......|-.++++. .+.+-..|+.++..+..+++. -..+.++|.++.+++.+. .+ ++....-.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 33455566677765 567788899999988877764 444677899999999998 54 233445567778899
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcC------ChhHHhHHHHHHHHHhccCch
Q 012677 366 HQDAIEEIGELGAIPCLLRIIREST------CERNKENCAAILYNICFTDRT 411 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~------~~~~~~~a~~~L~~L~~~~~~ 411 (458)
+.++.+.+.+.+.++.+++++.+.. ..+....--..+..|.++.+.
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~ 236 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPS 236 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHH
Confidence 9999999999999999999887421 112333334455666666653
No 304
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=86.96 E-value=0.21 Score=46.09 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=35.3
Q ss_pred CccccccccccccC-C--ccCCCcccccHHHHHHHHhc----------------------CCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTD-P--VVLANGQTFDRPCIQRWLDE----------------------GNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~-p--~~l~cgh~fc~~ci~~~~~~----------------------~~~~CP~c~~~l~~ 126 (458)
..-.|.||+-=|.+ | ..++|-|.|+..|+.+|+.. ....||+||..+..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 34569999876643 4 23589999999999888762 11269999987654
No 305
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=86.24 E-value=10 Score=32.58 Aligned_cols=144 Identities=13% Similarity=0.090 Sum_probs=85.2
Q ss_pred CchHHHHHHhhcC-ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHh
Q 012677 297 GAMTPLIDLLEEG-HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGE 375 (458)
Q Consensus 297 g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~ 375 (458)
..++.|..+|+++ +..+|..++++|..|-.-+..+.+....+.-..- ..-.........+. ..+.. + .-+...-
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~--~-~~ee~y~ 84 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-SENSNDESTDISLP-MMGIS--P-SSEEYYP 84 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc-cccccccchhhHHh-hccCC--C-chHHHHH
Confidence 3466778888776 7899999999999998877766653332111000 00000011221111 11111 1 2233333
Q ss_pred cCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHH
Q 012677 376 LGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILER 447 (458)
Q Consensus 376 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~ 447 (458)
..++..|+++|++..-......++.++.++......++...+ ...+|.++..+...+++.++.--.-|..
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 446889999999765556666888888888865544444444 4688999999987777766664444433
No 306
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.42 E-value=0.89 Score=32.40 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=28.8
Q ss_pred CcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHH
Q 012677 97 NGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV 135 (458)
Q Consensus 97 cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l 135 (458)
=.|+||..|.+..+. ..||-|+-.+....++|...+
T Consensus 27 fEcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 27 FECTFCADCAENRLH---GLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EeeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHHH
Confidence 357999999998774 479999999988877776554
No 307
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.37 E-value=44 Score=33.67 Aligned_cols=186 Identities=12% Similarity=0.040 Sum_probs=110.3
Q ss_pred CHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHh-hcCChHHHHH----HHHHHHHhcccccc
Q 012677 257 AIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLL-EEGHPLAMKD----VASAIFSLCILLEN 330 (458)
Q Consensus 257 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~----a~~aL~~L~~~~~~ 330 (458)
.+..++.+..+ .+...+..++..+..|.---..-..+ ...+..+..-+ .......+.. ..|....|.....
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~- 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH- 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC-
Confidence 45556665544 45777888888887775321111100 12233333333 2223333333 3444444433222
Q ss_pred hhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCC-HHH-------------HHHHHhcCCHHHHHHHHhhcCChhHHh
Q 012677 331 KRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSH-QDA-------------IEEIGELGAIPCLLRIIRESTCERNKE 396 (458)
Q Consensus 331 ~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~-~~~-------------~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 396 (458)
-.....+..|++++.++.+...++..+.-|..+ ++. |+++-. -.+|.|++-.+..+ ...+.
T Consensus 267 ---~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~-~~~k~ 341 (415)
T PF12460_consen 267 ---PLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEAD-DEIKS 341 (415)
T ss_pred ---chHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcC-hhhHH
Confidence 112245777888998888888888888888876 443 333322 24777877777554 56899
Q ss_pred HHHHHHHHHhccCchhHHHHHH-hhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 397 NCAAILYNICFTDRTRTREIME-EENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 397 ~a~~~L~~L~~~~~~~~~~~~~-~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+-+.+|..|..+-+.. .+.. -...+|.|+.-+...+..++..+..+|..+-...
T Consensus 342 ~yL~ALs~ll~~vP~~--vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKS--VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHhhCCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999987743 2222 2346666666676677788888888887776544
No 308
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.32 E-value=6.4 Score=33.99 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=71.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcC-ChHHHHHHHHHHHHhcccccchh-
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEG-HPLAMKDVASAIFSLCILLENKR- 332 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~- 332 (458)
.+..+..+|++++...|-.++..+..++.... .+.+.+ ..-+..|+.+|+.. .+.+.+.++.+|..|...-....
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 55567788899899999988888887766432 344434 34678888888876 55677888888877754333222
Q ss_pred ---HHHh---hCcHHHHHHHhccCCcHHHHHHHHHHhcC
Q 012677 333 ---RAVH---AGAVRVILRKIMENSLVDELLAILAMLSS 365 (458)
Q Consensus 333 ---~i~~---~g~v~~Lv~ll~~~~~~~~a~~~L~~La~ 365 (458)
.+.- .+.++.+++++.++...+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2222 15566666666655566667777766644
No 309
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=85.11 E-value=0.64 Score=48.62 Aligned_cols=49 Identities=8% Similarity=0.004 Sum_probs=35.8
Q ss_pred CCCCCccccccccccccCCcc----CC---CcccccHHHHHHHHhc-----CCCCCCCCCc
Q 012677 74 LGLPYEFRCPISGEIMTDPVV----LA---NGQTFDRPCIQRWLDE-----GNRTCPQTRQ 122 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~----l~---cgh~fc~~ci~~~~~~-----~~~~CP~c~~ 122 (458)
.+..+..+|++|...+.+|+- .| |+|.||..||..|..+ .+..|++|..
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 345677889999988888652 34 9999999999999863 1235566543
No 310
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.09 E-value=6.9 Score=43.44 Aligned_cols=129 Identities=22% Similarity=0.219 Sum_probs=96.9
Q ss_pred CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCH
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAI 258 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i 258 (458)
++++.|..|.-+|..+.--+..+. ....|.|+..+..+ .++.++.+++-+++.++..=+| +++ . .-
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fc------es~l~llftimeks---p~p~IRsN~VvalgDlav~fpn---lie-~-~T 1000 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFC------ESHLPLLFTIMEKS---PSPRIRSNLVVALGDLAVRFPN---LIE-P-WT 1000 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHH------HHHHHHHHHHHhcC---CCceeeecchheccchhhhccc---ccc-h-hh
Confidence 457788888888887775444333 24588899999854 4789999999888888755433 222 2 56
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
+.|...|...+..+|+.|.-+|..|..++ .|--.|.+..++.++.+++++++.-|=.-...|+
T Consensus 1001 ~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1001 EHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 67888999999999999999999998765 4444899999999999999888777664444443
No 311
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=84.13 E-value=12 Score=40.24 Aligned_cols=191 Identities=16% Similarity=0.063 Sum_probs=115.8
Q ss_pred HHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHH--HHHHHHhc
Q 012677 190 ELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIP--LLIDSVRT 267 (458)
Q Consensus 190 ~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~--~Lv~lL~~ 267 (458)
.|-..+..++.+...+.+ .|++..+...+... ...+.+..++..|.|++...+++....... .+. .+-.++..
T Consensus 494 ~l~~~t~~~~~~C~~~l~-~~g~~~~~~~l~~f---~~~~~~~~il~~l~n~~~~~~~~~~~~~~~-~~~~~~f~~~~~~ 568 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLD-NGGMKLLFKCLESF---DNEELHRKILGLLGNLAEVLELRELLMIFE-FIDFSVFKVLLNK 568 (699)
T ss_pred HHHhhhcCCHHHHHHHHh-cccHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHhh
Confidence 666888888999999999 99999999999875 367899999999999998776544443322 222 22234444
Q ss_pred CCH-HHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHH-HH
Q 012677 268 GTI-ETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRV-IL 344 (458)
Q Consensus 268 ~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~-Lv 344 (458)
-+. +.-..|+++|+.+..+.+....... .-+-..++... .. .........-...+.+ +.
T Consensus 569 w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i---------------~~---~~~~~~~~~~~~~f~~~~~ 630 (699)
T KOG3665|consen 569 WDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAI---------------SR---WLTSEIRVINDRSFFPRIL 630 (699)
T ss_pred cchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHh---------------hc---cCccceeehhhhhcchhHH
Confidence 343 7778888888887665443111110 11111122111 11 1111111111122222 33
Q ss_pred HHhc---cCCcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 345 RKIM---ENSLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 345 ~ll~---~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
+++. .+..+--|++++.++.. .+++.+.+.+.|+++.+.+.-..+....+++.+...+-
T Consensus 631 ~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 631 RILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred HHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 3443 33678889999999988 77888888889988888776653323455555554443
No 312
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.95 E-value=0.69 Score=48.20 Aligned_cols=44 Identities=20% Similarity=0.557 Sum_probs=32.3
Q ss_pred ccccccccccccCCccC--CCcccccHHHHHHHHhcCCCCCCC-CCcc
Q 012677 79 EFRCPISGEIMTDPVVL--ANGQTFDRPCIQRWLDEGNRTCPQ-TRQV 123 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~-c~~~ 123 (458)
.|.|.||.--.+.-... .|||..+.+|..+||..|. .||. |+..
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~CpsGCGC~ 1074 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPSGCGCH 1074 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCCCCCcC
Confidence 45688877655544333 6999999999999999765 7987 5443
No 313
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.94 E-value=13 Score=38.57 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=65.6
Q ss_pred CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHH
Q 012677 309 GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRI 385 (458)
Q Consensus 309 ~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~l 385 (458)
++.+.+.-|+..|.....+-+... ..++..+++|..+. .++..|+..|-.+|. +++....+ +..|+++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQ----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGH----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHH
Confidence 466677777777766655443322 23566677777766 467778888888887 45666665 4677888
Q ss_pred HhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh---hCCHHHHHHHHHHHH
Q 012677 386 IRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE---NGTSRAKRKANGILE 446 (458)
Q Consensus 386 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~---~~~~~~~~~A~~~L~ 446 (458)
|+.. +..-...+-.+|..|...++. +.+..|..-+. .+++.+++++...|.
T Consensus 105 L~td-d~~E~~~v~~sL~~ll~~d~k---------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 105 LQTD-DPVELDAVKNSLMSLLKQDPK---------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp TT----HHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred Hhcc-cHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 8843 355556666677766665532 22333333333 566667777666553
No 314
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=83.94 E-value=0.54 Score=32.21 Aligned_cols=39 Identities=23% Similarity=0.503 Sum_probs=23.7
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHhc-CCCCCCCCCcc
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE-GNRTCPQTRQV 123 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~-~~~~CP~c~~~ 123 (458)
+.|.||.|.+.+... .+...|....... ....||+|...
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 468899999844321 2444555554433 23579999763
No 315
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=83.87 E-value=38 Score=31.73 Aligned_cols=181 Identities=14% Similarity=0.068 Sum_probs=101.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc--CChHHHHHHHHHHHHhcccccchhHHHhhC
Q 012677 261 LIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE--GHPLAMKDVASAIFSLCILLENKRRAVHAG 338 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g 338 (458)
|-..|.+++..+|..|...|..+...-+. .. ....-+..|+..+.+ .|......++.+|..|...... ..+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~-~~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~-----~~~ 76 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPP-DF-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF-----SPE 76 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCH-hh-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC-----Chh
Confidence 44567778889999998888876542221 11 222235666665544 3566666667777777643321 111
Q ss_pred cHHHHHHHhccC--------CcHHHHHHHHHHhcCCHHHHHHHHhc--CCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 339 AVRVILRKIMEN--------SLVDELLAILAMLSSHQDAIEEIGEL--GAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 339 ~v~~Lv~ll~~~--------~~~~~a~~~L~~La~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
.+..+++.+.+. ..+..+..+|..|..+ .+..+.+. +.+..+++++....+|+.-..+..++..+...
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 122233322211 3466677777777553 22333322 34667777776555676666666666665433
Q ss_pred CchhHHHHHH-------------------------------------------hhhhhHHHHHHhhhCCHHHHHHHHHHH
Q 012677 409 DRTRTREIME-------------------------------------------EENANGTLSRLAENGTSRAKRKANGIL 445 (458)
Q Consensus 409 ~~~~~~~~~~-------------------------------------------~~g~~~~L~~ll~~~~~~~~~~A~~~L 445 (458)
.+- ....+ ..-.+|.|++-+.++++.+|.-+...|
T Consensus 155 ~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL 232 (262)
T PF14500_consen 155 FDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTL 232 (262)
T ss_pred ccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 221 01111 023566777777888888998888888
Q ss_pred HHHHhhH
Q 012677 446 ERLNKAA 452 (458)
Q Consensus 446 ~~l~~~~ 452 (458)
..+....
T Consensus 233 ~~c~~~y 239 (262)
T PF14500_consen 233 KACIENY 239 (262)
T ss_pred HHHHHHC
Confidence 8766543
No 316
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=83.33 E-value=0.68 Score=40.68 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=37.2
Q ss_pred cccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 80 FRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..|.+|..+...-+.- .||-.|+++|+.+++.+ ...||.|+--.+.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 3699999988776654 58888999999999986 5689999765543
No 317
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=82.94 E-value=1 Score=47.03 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=38.9
Q ss_pred CCCccccccccccccCCc----------cCCCcccc--------------------cHHHHHHHHhc-------CCCCCC
Q 012677 76 LPYEFRCPISGEIMTDPV----------VLANGQTF--------------------DRPCIQRWLDE-------GNRTCP 118 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~----------~l~cgh~f--------------------c~~ci~~~~~~-------~~~~CP 118 (458)
+||--+|+-|.+.|.||- -+.||..| |..|-.+|-.. +...||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 577889999999999873 24688888 99999887542 234899
Q ss_pred CCCccCC
Q 012677 119 QTRQVLS 125 (458)
Q Consensus 119 ~c~~~l~ 125 (458)
.|+-.+.
T Consensus 178 ~CGP~~~ 184 (750)
T COG0068 178 KCGPHLF 184 (750)
T ss_pred ccCCCeE
Confidence 9997654
No 318
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=82.58 E-value=0.47 Score=30.95 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=23.4
Q ss_pred cccccccccCCccCCC-cccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 82 CPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 82 C~ic~~~~~~p~~l~c-gh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
|--|... +--.+.| .|..|..|+...+.. +..||+|+.+++.
T Consensus 5 CKsCWf~--~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 5 CKSCWFA--NKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp --SS-S----SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred Chhhhhc--CCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 4444433 2234455 588999999998875 5579999999874
No 319
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=82.22 E-value=0.76 Score=26.18 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=11.1
Q ss_pred ccccccccccCCcc-CC-Ccccc
Q 012677 81 RCPISGEIMTDPVV-LA-NGQTF 101 (458)
Q Consensus 81 ~C~ic~~~~~~p~~-l~-cgh~f 101 (458)
.||-|......-.. -| |||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 47777765533222 23 66655
No 320
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=81.63 E-value=0.45 Score=39.95 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.8
Q ss_pred CccccccccccccCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVLAN 97 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~c 97 (458)
++.+||||++...+.|.|-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 35689999999999998754
No 321
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.28 E-value=50 Score=35.23 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchh
Q 012677 351 SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTR 412 (458)
Q Consensus 351 ~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 412 (458)
+++..|.-+|.-++. +| ..++..|.+|..+.++.++.-++.+|.--|.+...+
T Consensus 570 DVrRaAVialGFVl~~dp---------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDP---------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred HHHHHHHHHheeeEecCh---------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 455555555554443 33 236788999998888999999999999888877643
No 322
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.00 E-value=1.1 Score=41.40 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=22.3
Q ss_pred CcccccHHHHHHHHhc------------CCCCCCCCCccCCC
Q 012677 97 NGQTFDRPCIQRWLDE------------GNRTCPQTRQVLSH 126 (458)
Q Consensus 97 cgh~fc~~ci~~~~~~------------~~~~CP~c~~~l~~ 126 (458)
|....|++|+-+||.. +.-+||.||+.+.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 3445688999999862 45589999998754
No 323
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=79.98 E-value=12 Score=31.58 Aligned_cols=73 Identities=8% Similarity=0.126 Sum_probs=59.1
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh-CCHHHHHHHHHHHHHHHhh
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN-GTSRAKRKANGILERLNKA 451 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~-~~~~~~~~A~~~L~~l~~~ 451 (458)
++..|.+-|.+. ++.++..|+.+|..+..+-+.....-+....++.-|++++.. ..+.++++...++...+..
T Consensus 38 a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 466777777754 599999999999999988776666666667899999999877 6788999999999877643
No 324
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.78 E-value=0.88 Score=41.79 Aligned_cols=42 Identities=19% Similarity=0.436 Sum_probs=33.1
Q ss_pred CccccccccccccCCccCCC----cccccHHHHHHHHhcCC----CCCCC
Q 012677 78 YEFRCPISGEIMTDPVVLAN----GQTFDRPCIQRWLDEGN----RTCPQ 119 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~c----gh~fc~~ci~~~~~~~~----~~CP~ 119 (458)
..+.|.+|.+-++|--++.| .|-||..|-.+.++.+. -.||.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 35899999999999866655 79999999998887532 35666
No 325
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.26 E-value=27 Score=37.09 Aligned_cols=98 Identities=10% Similarity=0.045 Sum_probs=63.8
Q ss_pred ccCchHHHHHH-hhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHH
Q 012677 295 KLGAMTPLIDL-LEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAI 370 (458)
Q Consensus 295 ~~g~i~~Lv~l-L~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~ 370 (458)
+.++|..|+.+ .++.+.+++..|.-+|.-++..+.. ..+..|++|++. .++.-++.+|.--|.....+
T Consensus 552 nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 552 NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred chhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 35677888876 5566889999999999877665442 345567778754 67888888888777655555
Q ss_pred HHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 371 EEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 371 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
..+ ..|-.++.+. ..-+++-|+-++..|..
T Consensus 624 eAi------~lLepl~~D~-~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 624 EAI------NLLEPLTSDP-VDFVRQGALIALAMIMI 653 (929)
T ss_pred HHH------HHHhhhhcCh-HHHHHHHHHHHHHHHHH
Confidence 443 2222333333 36667777766666543
No 326
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=79.22 E-value=57 Score=32.33 Aligned_cols=159 Identities=11% Similarity=0.159 Sum_probs=103.0
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCC-HHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhh---c-------CChHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGT-IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLE---E-------GHPLAM 314 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~-------~~~~~~ 314 (458)
+++..+.+ .++.+|..+- ...+.....++.-|+.+.+.-..+....-+..|+.+-+ + .+..+.
T Consensus 41 d~r~eL~e------~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi 114 (532)
T KOG4464|consen 41 DDRKELGE------RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVI 114 (532)
T ss_pred hhHHHHHH------HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHH
Confidence 34555544 3677777764 55677777888888887766655555444555554432 1 234678
Q ss_pred HHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC-------CcHHHHHHHHHHhcC-CHHHHHHH-HhcCCHHHHHH
Q 012677 315 KDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN-------SLVDELLAILAMLSS-HQDAIEEI-GELGAIPCLLR 384 (458)
Q Consensus 315 ~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~-------~~~~~a~~~L~~La~-~~~~~~~i-~~~g~i~~Lv~ 384 (458)
..|+.+|.|+..+.. .+....+......+.+.+... .+..-=+..|.-|.. ..+.|.++ .+.+|++.+.+
T Consensus 115 ~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~ 194 (532)
T KOG4464|consen 115 MESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTN 194 (532)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHH
Confidence 899999999998776 455677777777777766432 344445666666654 66777776 67889999999
Q ss_pred HHhhc---C-----Ch------hHHhHHHHHHHHHhccCc
Q 012677 385 IIRES---T-----CE------RNKENCAAILYNICFTDR 410 (458)
Q Consensus 385 ll~~~---~-----~~------~~~~~a~~~L~~L~~~~~ 410 (458)
++.+. + ++ .....+++++.|++..+.
T Consensus 195 ~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 195 WLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred HhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 98741 0 11 234466777777776553
No 327
>PLN02189 cellulose synthase
Probab=78.75 E-value=1.2 Score=48.85 Aligned_cols=46 Identities=30% Similarity=0.533 Sum_probs=35.9
Q ss_pred ccccccccccc-----CCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 80 FRCPISGEIMT-----DPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 80 ~~C~ic~~~~~-----~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
..|.||++..- +|.+- .||.-.|+.|.+-=.+++++.||.|++...
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 47999998653 34332 488889999997667788899999998865
No 328
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=78.31 E-value=37 Score=37.16 Aligned_cols=175 Identities=15% Similarity=0.121 Sum_probs=105.0
Q ss_pred cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-hhhhhhcCCC
Q 012677 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-NKRLVAENPL 256 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~ 256 (458)
+++...|.+|+..+........ ........|.+..++..... +.+..+...|+..|..++..-. .-..+.. +
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~k---DaN~~v~~~aa~~l~~ia~~lr~~~~~~~~--~ 336 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLK---DANINVVMLAAQILELIAKKLRPLFRKYAK--N 336 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHhcchhhHHHHH--h
Confidence 5668889999998877665432 11111112333334443332 3466777777777777765422 2222222 3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc--chhHH
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE--NKRRA 334 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--~~~~i 334 (458)
+.|.|++-+......++..+..++-.... ...-...++.+...+.++++..+......+.......+ ....-
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~ 410 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE 410 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence 67888888887777777777766655543 11113467788889999999999887766665544332 22222
Q ss_pred HhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 335 VHAGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 335 ~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
.-.+.++.++....|. +++..|..++..+..
T Consensus 411 t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 411 TVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 2246777777777655 678777777766643
No 329
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.18 E-value=19 Score=41.29 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=99.5
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHH
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRA 334 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i 334 (458)
.||.|.+.=-.++..++.....+=..|..+. +..+-+ ..+++.|+.-|.+..-.+|+.++-||..|-...++-...
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~--k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~ 1076 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDS--KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVK 1076 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHH
Confidence 5666666556678888887776655555432 222222 345667777777778899999999999998876543321
Q ss_pred Hh-hCcHHHHHHHhccC--Cc---HHHHHHHHHHhcC---C---HHHHHHHHhcCCHHHHHH--HHhhcCChhHHhHHHH
Q 012677 335 VH-AGAVRVILRKIMEN--SL---VDELLAILAMLSS---H---QDAIEEIGELGAIPCLLR--IIRESTCERNKENCAA 400 (458)
Q Consensus 335 ~~-~g~v~~Lv~ll~~~--~~---~~~a~~~L~~La~---~---~~~~~~i~~~g~i~~Lv~--ll~~~~~~~~~~~a~~ 400 (458)
-. ......+.+.+.|= .+ ...++.+|..|+- + +..-++++ ...+|.|+. +| +.-++++..++.
T Consensus 1077 e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gim--s~v~evr~~si~ 1153 (1702)
T KOG0915|consen 1077 EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIM--SKVNEVRRFSIG 1153 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcc--cchHHHHHHHHH
Confidence 11 14455555555542 23 3446667766654 1 11112222 223555552 34 234899999999
Q ss_pred HHHHHhccCchhHHHHHHhhhhhHHHHHHhh
Q 012677 401 ILYNICFTDRTRTREIMEEENANGTLSRLAE 431 (458)
Q Consensus 401 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~ 431 (458)
+|.-|+...+...+.-. +..++.|.+...
T Consensus 1154 tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1154 TLMDLAKSSGKELKPHF--PKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHHhchhhhcchh--hHHHHHHHHHcc
Confidence 99999998875433322 334555555543
No 330
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=78.04 E-value=66 Score=30.75 Aligned_cols=215 Identities=12% Similarity=0.144 Sum_probs=135.4
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCC-hhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTD-PGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~-~~~~~~a~~~L~~ls~~~ 245 (458)
+.+..+|+.+- .+.+.+..++....++-+..-..|...++.-..=+-++..|-.+ ..+ +++.-..-..|..+.+++
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrEcirhe 156 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRECIRHE 156 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHHHHhhH
Confidence 45667777773 45666777776666666554444433322111112222222222 122 455555555677777887
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc--hhHhhc-c-CchHH-HHHHhhcCChHHHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN--KLIIGK-L-GAMTP-LIDLLEEGHPLAMKDVASA 320 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~-~-g~i~~-Lv~lL~~~~~~~~~~a~~a 320 (458)
.-.+.+.... -........+.++-++...|..+...+-..... .+.+.. . ...+. --.++++++.-++..+..+
T Consensus 157 ~LakiiL~s~-~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kl 235 (342)
T KOG1566|consen 157 FLAKIILEST-NFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKL 235 (342)
T ss_pred HHHHHHHcch-hHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHh
Confidence 7777777764 666677778888888888888888877654422 222222 1 12233 4568888999999999999
Q ss_pred HHHhcccccchhHH----HhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHH----HHHHHHhcCCHHHHHHHHh
Q 012677 321 IFSLCILLENKRRA----VHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQD----AIEEIGELGAIPCLLRIIR 387 (458)
Q Consensus 321 L~~L~~~~~~~~~i----~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~----~~~~i~~~g~i~~Lv~ll~ 387 (458)
|..+-.+..|-..+ -+...+..++.+|+++ .++-.|..+..-...+|. .+..+++.. +.|++++.
T Consensus 236 lg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~~l~ 310 (342)
T KOG1566|consen 236 LGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--PKLLELLH 310 (342)
T ss_pred HHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHHHHH
Confidence 99998888776653 3347889999999987 788899988887776542 344444443 55555554
No 331
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=78.02 E-value=56 Score=29.96 Aligned_cols=124 Identities=20% Similarity=0.216 Sum_probs=78.1
Q ss_pred CChhHHHHHHHHHHhcccCc-hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHH
Q 012677 226 TDPGLLEDLITTILNLSIHD-ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLID 304 (458)
Q Consensus 226 ~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ 304 (458)
.++..+...+..|-.++.++ .+... ++..|..+.+.+..+.+-.+.+.+..+-..++-.. +.+..++.
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~~~~------v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----~~L~~~L~ 81 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVCVPP------VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----PFLQPLLL 81 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccchhH------HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----HHHHHHHH
Confidence 47899999999999999887 33333 34446666666766666666666666654332111 33444443
Q ss_pred Hh--------hcC--ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHh-ccC--CcHHHHHHHHHHhc
Q 012677 305 LL--------EEG--HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKI-MEN--SLVDELLAILAMLS 364 (458)
Q Consensus 305 lL--------~~~--~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll-~~~--~~~~~a~~~L~~La 364 (458)
.+ .++ ..+.....+.++..+|...++ -....++.+...| .+. ..+..++.+|..||
T Consensus 82 ~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 82 LLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 31 111 334455556788888887776 2345778888888 444 45677888899888
No 332
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.69 E-value=1.8 Score=41.71 Aligned_cols=48 Identities=31% Similarity=0.484 Sum_probs=37.7
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
...|.+.+..|.+||-+.-|..|....|.+|++. +.+-|..++++...
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~ 87 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGK 87 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccc
Confidence 4569999999999999999999999999999984 33445555554443
No 333
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=76.93 E-value=1.4 Score=49.36 Aligned_cols=50 Identities=24% Similarity=0.454 Sum_probs=34.9
Q ss_pred Cccccccccccc--cCC-ccCCCcccccHHHHHHHHhc---C------CCCCCCCCccCCCC
Q 012677 78 YEFRCPISGEIM--TDP-VVLANGQTFDRPCIQRWLDE---G------NRTCPQTRQVLSHT 127 (458)
Q Consensus 78 ~~~~C~ic~~~~--~~p-~~l~cgh~fc~~ci~~~~~~---~------~~~CP~c~~~l~~~ 127 (458)
.+..|-||+..- .-| +.+.|||.|+..|..+.+.. | -..||.|..++...
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 355788887533 234 56899999999998765542 1 22799999887653
No 334
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=76.93 E-value=98 Score=33.73 Aligned_cols=206 Identities=13% Similarity=0.072 Sum_probs=110.2
Q ss_pred CChhHHHHHHHHHHhcccCch-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHH
Q 012677 226 TDPGLLEDLITTILNLSIHDE-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLID 304 (458)
Q Consensus 226 ~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ 304 (458)
.++.++.+....+..+-...+ ......... .+|.++.+-......++......+--++.... ..+...-.-+.+..
T Consensus 449 e~~~V~lnli~~ls~~~~v~~v~g~~~~s~s-lLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~ 525 (759)
T KOG0211|consen 449 EDPIVRLNLIDKLSLLEEVNDVIGISTVSNS-LLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRT 525 (759)
T ss_pred hhHHHHHhhHHHHHHHHhccCcccchhhhhh-hhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHh
Confidence 356666666554433322211 222333332 66766666555556666666666666554322 22222222233333
Q ss_pred HhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHH---HHHHHHHHhcCCHHHHHHHHhcCCH
Q 012677 305 LLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVD---ELLAILAMLSSHQDAIEEIGELGAI 379 (458)
Q Consensus 305 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~---~a~~~L~~La~~~~~~~~i~~~g~i 379 (458)
.+.+....++..|+..+..++..-. ..-...-.++.++....++ ..+. .++..|..+.+.+-..+.+ +
T Consensus 526 ~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~L-----l 598 (759)
T KOG0211|consen 526 WLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDL-----L 598 (759)
T ss_pred hhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHH-----h
Confidence 4444566788888888777764333 1112223455555444443 2333 3444555555555555444 6
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 380 PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 380 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
|.+..+..+. .+.++-++++.|..+...-.. ... +.-..+.+..|..+.+.+++-.|..+..
T Consensus 599 p~~~~l~~D~-vanVR~nvak~L~~i~~~L~~---~~~-~~~v~pll~~L~~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 599 PVFLDLVKDP-VANVRINVAKHLPKILKLLDE---SVR-DEEVLPLLETLSSDQELDVRYRAILAFG 660 (759)
T ss_pred HHHHHhccCC-chhhhhhHHHHHHHHHhhcch---HHH-HHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 7778887765 489999999999888775432 112 2445566666666655555555544443
No 335
>PLN02436 cellulose synthase A
Probab=76.89 E-value=1.5 Score=48.32 Aligned_cols=47 Identities=30% Similarity=0.574 Sum_probs=36.3
Q ss_pred cccccccccccc-----CCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 79 EFRCPISGEIMT-----DPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 79 ~~~C~ic~~~~~-----~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
...|.||++..- +|.+- .||.-.|+.|.+-=.+.+++.||.|++...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 347999998652 34433 488889999997667788899999998765
No 336
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.86 E-value=1.1e+02 Score=32.89 Aligned_cols=169 Identities=14% Similarity=0.144 Sum_probs=93.2
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhH--------hh-ccC
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLI--------IG-KLG 297 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~--------i~-~~g 297 (458)
..-+.-.|+.++.++..... +.+.. .+..|--+++++...+|-.|..+|..++.....+.. ++ +.+
T Consensus 258 ~emV~~EaArai~~l~~~~~--r~l~p---avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~N 332 (865)
T KOG1078|consen 258 SEMVIYEAARAIVSLPNTNS--RELAP---AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSN 332 (865)
T ss_pred hHHHHHHHHHHHhhccccCH--hhcch---HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccc
Confidence 55677788888877764322 33222 566677788889999999999999999875533221 11 111
Q ss_pred ---chHHHHHHhhcCChHHHH----HHHHHHHHhcccccchhHH-------------HhhCcHHHHHHHhccC---CcHH
Q 012677 298 ---AMTPLIDLLEEGHPLAMK----DVASAIFSLCILLENKRRA-------------VHAGAVRVILRKIMEN---SLVD 354 (458)
Q Consensus 298 ---~i~~Lv~lL~~~~~~~~~----~a~~aL~~L~~~~~~~~~i-------------~~~g~v~~Lv~ll~~~---~~~~ 354 (458)
+-.++..+|+.|...... .......+++... +..+ -..+.+..|.++|.+. +.+.
T Consensus 333 rsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeF--Kivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~ 410 (865)
T KOG1078|consen 333 RSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEF--KIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKR 410 (865)
T ss_pred cchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccc--eEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHH
Confidence 334555666666443332 2333333333221 1111 1124555666666543 4455
Q ss_pred HHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc
Q 012677 355 ELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 355 ~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
....++..+.. +++.|+.. +..|.+.+.+. ....-+..+|.-|....+
T Consensus 411 aivd~Ii~iie~~pdsKe~~-----L~~LCefIEDc---e~~~i~~rILhlLG~EgP 459 (865)
T KOG1078|consen 411 AIVDAIIDIIEENPDSKERG-----LEHLCEFIEDC---EFTQIAVRILHLLGKEGP 459 (865)
T ss_pred HHHHHHHHHHHhCcchhhHH-----HHHHHHHHHhc---cchHHHHHHHHHHhccCC
Confidence 56666666655 56665544 44556666532 334456666666655443
No 337
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.37 E-value=81 Score=34.82 Aligned_cols=137 Identities=14% Similarity=0.102 Sum_probs=86.7
Q ss_pred cCChHHHhhccCCCC----CCCChhHHHHHHHHHHhcc----cCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHH
Q 012677 209 TDAIPLLLSPLSPGR----ADTDPGLLEDLITTILNLS----IHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAAL 280 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~----~~~~~~~~~~a~~~L~~ls----~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L 280 (458)
.|.++.+++.|.+.. ...++.-.+.|+.++++|+ +.+..+..+-. - +++.+...++++---+|..||+++
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~-f-lv~hVfP~f~s~~g~Lrarac~vl 486 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEY-F-LVNHVFPEFQSPYGYLRARACWVL 486 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHH-H-HHHHhhHhhcCchhHHHHHHHHHH
Confidence 467777788776321 1234566778888888776 23333333322 1 445556667787778999999999
Q ss_pred HHhhccC-cchhHhhccCchHHHHHHhh-cCChHHHHHHHHHHHHhcccccchhHHHhh---CcHHHHHHHhcc
Q 012677 281 FSLSALD-SNKLIIGKLGAMTPLIDLLE-EGHPLAMKDVASAIFSLCILLENKRRAVHA---GAVRVILRKIME 349 (458)
Q Consensus 281 ~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~---g~v~~Lv~ll~~ 349 (458)
..++..+ .+...+ ..+++.....|. +.+..++..|+-||..+-.+.+....-+++ +.++.|+.+.++
T Consensus 487 ~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 9998543 222222 234666667776 567889999999999998877644332333 455555555543
No 338
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=76.27 E-value=1.6 Score=30.66 Aligned_cols=13 Identities=38% Similarity=1.055 Sum_probs=9.6
Q ss_pred cccHHHHHHHHhc
Q 012677 100 TFDRPCIQRWLDE 112 (458)
Q Consensus 100 ~fc~~ci~~~~~~ 112 (458)
.|||.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 339
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.77 E-value=20 Score=30.12 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=58.5
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh-CCHHHHHHHHHHHHHHHhh
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN-GTSRAKRKANGILERLNKA 451 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~-~~~~~~~~A~~~L~~l~~~ 451 (458)
++..|.+-|.+. ++.++..|+.+|..+..+-+......+....+++.|++++.. .++.+++++..++..-+..
T Consensus 42 a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 467777778764 599999999999999987665565666678899999998874 5678999999999877654
No 340
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=75.73 E-value=81 Score=30.63 Aligned_cols=183 Identities=17% Similarity=0.138 Sum_probs=117.5
Q ss_pred hhhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc-Cc-h
Q 012677 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI-HD-E 246 (458)
Q Consensus 169 ~l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~-~~-~ 246 (458)
.+..++..++++...+..+....+.+.. + -+..+-..|++. ...+...++..|..++. +. .
T Consensus 28 ~L~~~l~~ls~~~~~~~~g~~l~~~iL~----------~---~~k~lyr~L~~~----~~~~~~~~LrLL~~iv~f~~g~ 90 (330)
T PF11707_consen 28 VLALLLKKLSSDLSFQSYGLELIRSILQ----------N---HLKLLYRSLSSS----KPSLTNPALRLLTAIVSFDGGA 90 (330)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHH----------H---HHHHHHHHhCcC----cHHHHHHHHHHHHHHHccCCHH
Confidence 4555555556555544444444333332 1 155666667664 56777788999988887 43 2
Q ss_pred hhhhhhcCCC-CHHHHHHHHhcC-----C--------HHHHHHHHHHHHHhhccCc--chhHh-hccCchHHHHHHhhcC
Q 012677 247 NKRLVAENPL-AIPLLIDSVRTG-----T--------IETRRNAAAALFSLSALDS--NKLII-GKLGAMTPLIDLLEEG 309 (458)
Q Consensus 247 ~~~~i~~~~~-~i~~Lv~lL~~~-----~--------~~~~~~a~~~L~~Ls~~~~--~~~~i-~~~g~i~~Lv~lL~~~ 309 (458)
..+.+...-+ -.+.+.+++... . ..+|...+..+..+....+ .+..+ .+.+.+..+.+-|..+
T Consensus 91 ~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D 170 (330)
T PF11707_consen 91 LAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD 170 (330)
T ss_pred HHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC
Confidence 3444444322 334566666321 1 2889999988777765443 34444 4577888899988888
Q ss_pred ChHHHHHHHHHHHH-hccccc----chhHHHhhCcHHHHHHHhccC------CcHHHHHHHHHHhcCCHH
Q 012677 310 HPLAMKDVASAIFS-LCILLE----NKRRAVHAGAVRVILRKIMEN------SLVDELLAILAMLSSHQD 368 (458)
Q Consensus 310 ~~~~~~~a~~aL~~-L~~~~~----~~~~i~~~g~v~~Lv~ll~~~------~~~~~a~~~L~~La~~~~ 368 (458)
++++....+.+|.. +..+.. .+..+.....+..|+.+.... .+.+.+-..|..+|.++.
T Consensus 171 ~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 171 PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 89999999999985 444332 445577778889999976533 457888999999997554
No 341
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.48 E-value=46 Score=35.35 Aligned_cols=70 Identities=14% Similarity=-0.051 Sum_probs=46.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
.+..|++-..+++..+|...+.+|.-|+....-...-+-.+.+..|..-+.+..+.+|..|..+|..+=.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 5555566666778899999999988887632222222234455666666666677888888888887753
No 342
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=75.45 E-value=66 Score=29.48 Aligned_cols=137 Identities=16% Similarity=0.114 Sum_probs=83.0
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHH
Q 012677 258 IPLLID-SVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV 335 (458)
Q Consensus 258 i~~Lv~-lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 335 (458)
+|.|+. +-+..++..+.....+|..++.++ .+... ++..|+.+.+.++.+...-+.+.+..+-..++-.-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 344444 334458889999999999999877 33222 46667777777776665666666666655444222
Q ss_pred hhCcHHHHHHH-----h---ccC----CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 336 HAGAVRVILRK-----I---MEN----SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 336 ~~g~v~~Lv~l-----l---~~~----~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
+.+..++.. . .++ ......+..+..+|. .|+ .....++.+..++...+++..+..|+.+|
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 334433333 1 111 122333456677776 444 11224777788883244588999999999
Q ss_pred HHHhccC
Q 012677 403 YNICFTD 409 (458)
Q Consensus 403 ~~L~~~~ 409 (458)
..||...
T Consensus 147 ~~Lc~~~ 153 (234)
T PF12530_consen 147 APLCEAE 153 (234)
T ss_pred HHHHHHh
Confidence 9999543
No 343
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=75.44 E-value=1.7 Score=47.99 Aligned_cols=47 Identities=28% Similarity=0.556 Sum_probs=36.2
Q ss_pred cccccccccccc-----CCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 79 EFRCPISGEIMT-----DPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 79 ~~~C~ic~~~~~-----~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.-.|-||++..- +|.+- .||--.||.|.+-=.++|+..||.|++...
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 347999998652 34443 588889999996666778999999998765
No 344
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=75.40 E-value=1.6 Score=35.76 Aligned_cols=44 Identities=25% Similarity=0.542 Sum_probs=32.4
Q ss_pred ccccccccccccC--Ccc-CCCc------ccccHHHHHHHHhcCCCCCCCCCcc
Q 012677 79 EFRCPISGEIMTD--PVV-LANG------QTFDRPCIQRWLDEGNRTCPQTRQV 123 (458)
Q Consensus 79 ~~~C~ic~~~~~~--p~~-l~cg------h~fc~~ci~~~~~~~~~~CP~c~~~ 123 (458)
...|.||.+...+ .|+ ++|| |-||..|+.+|-+ ....-|.-|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccce
Confidence 4569999987766 544 4665 6799999999964 35568887655
No 345
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=75.33 E-value=26 Score=36.91 Aligned_cols=179 Identities=10% Similarity=0.076 Sum_probs=113.3
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc-chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHH
Q 012677 256 LAIPLLIDSVRTGTIETRRNAAAALFSLSALDS-NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRA 334 (458)
Q Consensus 256 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i 334 (458)
+++|.|+++++..+..+|.. +|.++-..-+ -...+.+..++|.+..-+.+.++.+++..+..+..|+.--.-+ .
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~ 404 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--N 404 (690)
T ss_pred chhhhHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--h
Confidence 49999999999999988874 4444433222 3456777888999999999999999999999988886533222 2
Q ss_pred HhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC--HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc
Q 012677 335 VHAGAVRVILRKIMEN--SLVDELLAILAMLSSH--QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 335 ~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
+....+..|-++-.+. .++.....+|..++.+ +..|..+ .+.++.+-+++.- ...+..++.+++......+
T Consensus 405 Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~v----L~~aftralkdpf-~paR~a~v~~l~at~~~~~ 479 (690)
T KOG1243|consen 405 LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRV----LASAFTRALKDPF-VPARKAGVLALAATQEYFD 479 (690)
T ss_pred hcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccc----cchhhhhhhcCCC-CCchhhhhHHHhhcccccc
Confidence 2222334444433322 5666666666666653 2222222 2445556666543 6778888888887776654
Q ss_pred hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 411 TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 411 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
.. .+. ....+.+.-+.-+.+..++..|-.+++..
T Consensus 480 ~~--~va--~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 480 QS--EVA--NKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hh--hhh--hhccccccccccCcccchhhHHHHHHHHH
Confidence 32 221 23556666666666666777777666544
No 346
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=75.26 E-value=35 Score=36.87 Aligned_cols=195 Identities=14% Similarity=0.101 Sum_probs=118.8
Q ss_pred HHHhcccCc-hhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchH--HHHHHhhcC-Ch
Q 012677 237 TILNLSIHD-ENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMT--PLIDLLEEG-HP 311 (458)
Q Consensus 237 ~L~~ls~~~-~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~--~Lv~lL~~~-~~ 311 (458)
+|.+..... ++.+.+.+.+ ++..+...++. ...+.+..+.+.|.|++...++........-+. ..-.++..- +.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~-g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNG-GMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcc-cHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 444555443 4677888875 88889998875 567899999999999998776654443322222 222233333 34
Q ss_pred HHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHH-HHHHHhhc
Q 012677 312 LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSS-HQDAIEEIGELGAIPC-LLRIIRES 389 (458)
Q Consensus 312 ~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~-Lv~ll~~~ 389 (458)
+....|+..|..+..+.+.. .+. ..+..+...+..... .+..........-..+ +..++..+
T Consensus 573 ersY~~~siLa~ll~~~~~~---~~~-------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKT---TEC-------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcC---ccc-------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 77788888888887765541 111 122223322222222 2222222222222333 66677766
Q ss_pred CChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh-hCCHHHHHHHHHHHHHHH
Q 012677 390 TCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE-NGTSRAKRKANGILERLN 449 (458)
Q Consensus 390 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~l~ 449 (458)
..+..+-.|++++.++....+. ..+.+.+.|+...+.++.. +....+++.+..++....
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKE-YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChh-hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 6789999999999999998876 4566777888888877643 234567777776665443
No 347
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=75.02 E-value=95 Score=32.74 Aligned_cols=129 Identities=15% Similarity=0.087 Sum_probs=69.5
Q ss_pred chHHHHHHhhcC----ChHHHHHHHHHHHHhcc----cccchhHHHhhCcHHHHHHHhccC------CcHHHHHHHHHHh
Q 012677 298 AMTPLIDLLEEG----HPLAMKDVASAIFSLCI----LLENKRRAVHAGAVRVILRKIMEN------SLVDELLAILAML 363 (458)
Q Consensus 298 ~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~----~~~~~~~i~~~g~v~~Lv~ll~~~------~~~~~a~~~L~~L 363 (458)
.++.+..++.++ .+.++..|.-++++|.. ..+.+...+-...++.|.+.|.+. .-+...+.+|.|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 455666666643 45566666766666643 223222223334667777666532 1233366677766
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHh-h-cCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh--CCHHHHH
Q 012677 364 SSHQDAIEEIGELGAIPCLLRIIR-E-STCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN--GTSRAKR 439 (458)
Q Consensus 364 a~~~~~~~~i~~~g~i~~Lv~ll~-~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~--~~~~~~~ 439 (458)
.... .+..|..++. + ..+..++..|+++|..++...+... .+.|..+..+ .++.+|.
T Consensus 474 g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v---------~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 474 GHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV---------QEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred CChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH---------HHHHHHHHcCCCCChHHHH
Confidence 3311 2444455554 1 2246899999999999887555432 2344444433 2344555
Q ss_pred HHHHHH
Q 012677 440 KANGIL 445 (458)
Q Consensus 440 ~A~~~L 445 (458)
.|..+|
T Consensus 535 aA~~~l 540 (574)
T smart00638 535 AAVLVL 540 (574)
T ss_pred HHHHHH
Confidence 555444
No 348
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.90 E-value=72 Score=37.02 Aligned_cols=140 Identities=14% Similarity=0.214 Sum_probs=82.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc-cccchhHHHhh
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI-LLENKRRAVHA 337 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~i~~~ 337 (458)
..++..|..+...+|..|..+|.++...|.. .+....+-..+-.-+.+.+..+|+.|+..+..... .++...+..
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY-- 894 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYY-- 894 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHH--
Confidence 3556666666778888888888888766532 11112222222334445677888888888875433 333333222
Q ss_pred CcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcC-Ch-hHHhHHHHHHHHHhccCc
Q 012677 338 GAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIREST-CE-RNKENCAAILYNICFTDR 410 (458)
Q Consensus 338 g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~-~~~~~a~~~L~~L~~~~~ 410 (458)
..+..-+.+. .++++++.+|+.+|..-..-..+ +...+++|+..+ .+ .++..+..++..++..+.
T Consensus 895 ---~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~ 963 (1692)
T KOG1020|consen 895 ---DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPV 963 (1692)
T ss_pred ---HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHHHHHHHHHHHHhccCC
Confidence 2223323333 68999999999998833332233 345566776422 23 389999999999987654
No 349
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=74.74 E-value=2.6 Score=37.77 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=41.5
Q ss_pred ccccccccccccCCccC-CCcccccHHHHHHHHhcC-CCCCCC--CCccCCCCCCcccHHH
Q 012677 79 EFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEG-NRTCPQ--TRQVLSHTVLIPNHLV 135 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~-~~~CP~--c~~~l~~~~~~~n~~l 135 (458)
+.+|||......-|+.- .|.|.|.+.-|..+++-. ...||. |.+....+.+..++-+
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 56899999888888764 699999999999999732 346887 6555554555444444
No 350
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=74.72 E-value=25 Score=30.15 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=75.7
Q ss_pred CHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHH
Q 012677 257 AIPLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV 335 (458)
Q Consensus 257 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 335 (458)
.++.|..+|+.+ +..+|..+.++|..|-.-|..+......+. +.-. -.+.+....... +.+.... ..-....
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~~---l~~~~~~-~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDIS---LPMMGIS-PSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhhH---HhhccCC-CchHHHH
Confidence 456778888876 689999999999999877777665433210 0000 001111111111 1111111 1122233
Q ss_pred hhCcHHHHHHHhccCC---cHHHHHHHHHHhcCCHHHH-HHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHh
Q 012677 336 HAGAVRVILRKIMENS---LVDELLAILAMLSSHQDAI-EEIGELGAIPCLLRIIRESTCERNKENCAAILYNIC 406 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~~---~~~~a~~~L~~La~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 406 (458)
-..++..|++.|+++. ....++.++.++......+ ..+. .-.+|.++..++... +..++.-..-|..|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~-~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCP-DSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCC-HHHHHHHHHHHHHHH
Confidence 3457788888888873 3345666666555321111 1111 224788888888654 577777666665553
No 351
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.42 E-value=36 Score=36.11 Aligned_cols=105 Identities=11% Similarity=0.058 Sum_probs=76.4
Q ss_pred cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHH
Q 012677 296 LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEI 373 (458)
Q Consensus 296 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i 373 (458)
.|.+..|++-..+.+..+|...+..|..+......+...+-.+....|..-+.+. .++..|+-+|..+=.++..-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 4567777777778889999999999999887555555556667777777767655 68889999998886422110
Q ss_pred HhcCCHHHHHHHHhhcCChhHHhHHHHHHHH
Q 012677 374 GELGAIPCLLRIIRESTCERNKENCAAILYN 404 (458)
Q Consensus 374 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 404 (458)
+..++..++.+++++++++++..|+..+.+
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 123577889999988889999887655443
No 352
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.81 E-value=44 Score=35.69 Aligned_cols=226 Identities=14% Similarity=0.199 Sum_probs=108.8
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch------hhhhhhcC
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE------NKRLVAEN 254 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~------~~~~i~~~ 254 (458)
.-+|+.|+.++..+=+..+. .+ .++=+.+-.+|.. +.|+..+++|.-.|..+-.... +...+-.-
T Consensus 148 sYVRrNAilaifsIyk~~~~---L~---pDapeLi~~fL~~---e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~ 218 (948)
T KOG1058|consen 148 SYVRRNAILAIFSIYKNFEH---LI---PDAPELIESFLLT---EQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSF 218 (948)
T ss_pred hhhhhhhheeehhHHhhhhh---hc---CChHHHHHHHHHh---ccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCc
Confidence 55788888777665543221 11 2333333344433 2477888887766654321110 11111111
Q ss_pred CCCHH-HHHHHHhc---CCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcc-cc
Q 012677 255 PLAIP-LLIDSVRT---GTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCI-LL 328 (458)
Q Consensus 255 ~~~i~-~Lv~lL~~---~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~ 328 (458)
|..+. .+|++++. .++..+..-...+.+|-... +-..+.+ +|.+ +.+ +.+|.+.+.|+.++..|.. ..
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~st-ssaV~fEaa~tl---v~l--S~~p~alk~Aa~~~i~l~~kes 292 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSST-SSAVIFEAAGTL---VTL--SNDPTALKAAASTYIDLLVKES 292 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcC-CchhhhhhcceE---EEc--cCCHHHHHHHHHHHHHHHHhcc
Confidence 11111 22334432 34555555566666665444 2223333 3322 221 3356666666666666654 33
Q ss_pred cchhHHHh---------------hCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhh---
Q 012677 329 ENKRRAVH---------------AGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRE--- 388 (458)
Q Consensus 329 ~~~~~i~~---------------~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~--- 388 (458)
+|...++- .|.+--++++|.++ +++.+++.+...|+.+.. +..++.+|+.
T Consensus 293 dnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN----------vediv~~Lkke~~ 362 (948)
T KOG1058|consen 293 DNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN----------VEDIVQFLKKEVM 362 (948)
T ss_pred CcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHH
Confidence 34333221 12333334455555 567777777777665321 2333333321
Q ss_pred -------cCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHH
Q 012677 389 -------STCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRA 437 (458)
Q Consensus 389 -------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~ 437 (458)
..+.+-+..-+.+++..+...++.. +..++.|++.+.+.++..
T Consensus 363 kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a------atvV~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 363 KTHNEESDDNGKYRQLLIKTIHACAVKFPEVA------ATVVSLLLDFISDSNEAA 412 (948)
T ss_pred hccccccccchHHHHHHHHHHHHHhhcChHHH------HHHHHHHHHHhccCCHHH
Confidence 1124456667777777777665432 345677777776665543
No 353
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.80 E-value=1.5 Score=39.36 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=29.8
Q ss_pred cccccccccCCccCCCcc-cccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 82 CPISGEIMTDPVVLANGQ-TFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 82 C~ic~~~~~~p~~l~cgh-~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
|-.|.+--..-+.+||.| .+|..|=.. ...||+|+.+...
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 888887666656679998 689999532 4579999887643
No 354
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=73.48 E-value=45 Score=31.25 Aligned_cols=162 Identities=16% Similarity=0.145 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhcccCchh--------hhhhhcCCCCHHHHHHHHhcCC----HHHHHHHHHHHHHhhccCcchhHhhcc
Q 012677 229 GLLEDLITTILNLSIHDEN--------KRLVAENPLAIPLLIDSVRTGT----IETRRNAAAALFSLSALDSNKLIIGKL 296 (458)
Q Consensus 229 ~~~~~a~~~L~~ls~~~~~--------~~~i~~~~~~i~~Lv~lL~~~~----~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 296 (458)
...+.++..|..|+...++ |-.+.-. +.+|.++.-+..++ .......+..|..++... ..
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~l-a~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-------~~ 148 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLL-ALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-------GL 148 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHH-HHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-------CC
Confidence 5566677777777654332 2222111 24566666666665 133445667777777321 11
Q ss_pred CchHHHHHHhhcCC----hHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHH
Q 012677 297 GAMTPLIDLLEEGH----PLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAI 370 (458)
Q Consensus 297 g~i~~Lv~lL~~~~----~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~ 370 (458)
+.+..+......+. .+....++..|+.-.. ++ .+...+..|+++|.++ .++...+.+|..+-...+.+
T Consensus 149 ~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~ 222 (262)
T PF14225_consen 149 PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR 222 (262)
T ss_pred ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC
Confidence 22333444433332 2333344444433211 11 2334667788899877 57899999999998865555
Q ss_pred HHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 371 EEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 371 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
.. .....+.+|+++++. .....|+.+|.++...+
T Consensus 223 ~~-~~~dlispllrlL~t----~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 223 SP-HGADLISPLLRLLQT----DLWMEALEVLDEIVTRS 256 (262)
T ss_pred CC-cchHHHHHHHHHhCC----ccHHHHHHHHHHHHhhc
Confidence 44 344479999999984 34567888887766544
No 355
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=73.35 E-value=25 Score=29.05 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=57.1
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh---CCHHHHHHHHHHHHHHHhhH
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN---GTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~---~~~~~~~~A~~~L~~l~~~~ 452 (458)
++..|-+-|+++ ++.++..|+.+|..+..+.+......+....++.-|++++.. .++.+++++..++......-
T Consensus 38 a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 467777778865 599999999999999987766555555555677778888864 36789999999998877543
No 356
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=73.23 E-value=34 Score=36.19 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=65.5
Q ss_pred HHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhc------CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch
Q 012677 340 VRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGEL------GAIPCLLRIIRESTCERNKENCAAILYNICFTDRT 411 (458)
Q Consensus 340 v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~------g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 411 (458)
...++.+|.+. .++..-+.+.+|+..+-....++.++ ..+..|++-+.+. ++-++..|+..+..|+..+..
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~-~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT-YPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHhCccc
Confidence 35567788776 35555666677766532222233221 1244444445544 599999999999999876642
Q ss_pred hHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 412 RTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 412 ~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
.. -....++..+..-+++-+..++++|..+...|-
T Consensus 380 ~~---~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 380 TV---GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred cc---chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 11 111334556666677778889999998887553
No 357
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=72.49 E-value=4.4 Score=40.76 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=85.1
Q ss_pred HHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHH--HHHhccCCcH
Q 012677 277 AAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVI--LRKIMENSLV 353 (458)
Q Consensus 277 ~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L--v~ll~~~~~~ 353 (458)
+..+.....++.|+..++. ..+|..+.....++ ..+.+.+..++..++.......+.+....+.+- +.-+.++. .
T Consensus 226 ~~~fv~k~e~e~n~~~iGk~~~~I~~~~~~ieS~-~hvVek~~~~~~s~~~~~~~t~ql~k~~l~~pTe~v~~l~~~~-I 303 (763)
T KOG4231|consen 226 ASTFVKKMEDEGNRSVIGKDENAIRQLISMIESD-QHVVEKACVALSSLARDVGVTMQLMKCDLMKPTETVLKLSSPD-I 303 (763)
T ss_pred HHHHHHHhhCcccceeecccchhhhhhccccccc-chhhcccccccccHHHHHHHHHHHHHHHhcCcchhhhhhcccc-H
Confidence 3455666677788888877 55566666655443 334444444444333322222222221111110 00111111 1
Q ss_pred HHHHHHHHHhcCC--HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh
Q 012677 354 DELLAILAMLSSH--QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE 431 (458)
Q Consensus 354 ~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~ 431 (458)
...+..+..++.. ...++... ..+..+++.+.-..++++++.|..++.+++.+.+++. ...-....-..+++++.
T Consensus 304 ~~l~~~v~~~~~~s~s~~Qe~~~--K~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~-~~~tsp~l~~~~~~~i~ 380 (763)
T KOG4231|consen 304 ISLLQVVVTLAFVSDSVSQEMLT--KDMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRR-ILITSPSLRELLMRLIV 380 (763)
T ss_pred hhHHHHHhcCCchhhhHHhhhhH--HHHHHHHHHHhcccChHHHHHHHHHHHHheecccccc-cccCChHHHHHHHHHhc
Confidence 2222223333331 11222221 1234444444445569999999999999999887653 33333444455677776
Q ss_pred hCCHHHHHHHHHHHHHHHh
Q 012677 432 NGTSRAKRKANGILERLNK 450 (458)
Q Consensus 432 ~~~~~~~~~A~~~L~~l~~ 450 (458)
...++..+.+..++.-+.+
T Consensus 381 ~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 381 TPEPRVNKAAARALAILGE 399 (763)
T ss_pred ccccccchhhhHHHHHhhh
Confidence 6777777777777665554
No 358
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=72.34 E-value=98 Score=30.05 Aligned_cols=162 Identities=20% Similarity=0.152 Sum_probs=106.5
Q ss_pred hhhhHHhhcCC-cHHHHHHHHHHHHHHh-hCchhhhhhhhccC-ChHHHhhccCCCCCCCC---------hhHHHHHHHH
Q 012677 170 LNSLLEKMSSS-LSDQKEAAKELRLLTK-RMPLFRALFGESTD-AIPLLLSPLSPGRADTD---------PGLLEDLITT 237 (458)
Q Consensus 170 l~~Lv~~l~~~-~~~~~~a~~~L~~l~~-~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~---------~~~~~~a~~~ 237 (458)
++.+.+.|++. ......++..|..++. +.......+...-+ ..+.|..++........ +.++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 66677777543 4455667777777776 55444444433122 23344455432211101 2777777776
Q ss_pred HHhcccC--chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-----cchhHhhccCchHHHHHHhhcCC
Q 012677 238 ILNLSIH--DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-----SNKLIIGKLGAMTPLIDLLEEGH 310 (458)
Q Consensus 238 L~~ls~~--~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-----~~~~~i~~~g~i~~Lv~lL~~~~ 310 (458)
+..+... ...++.+....+.+..+.+-|...+.++......+|..=...+ ..|..+.+...+..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 6655443 3367788877778888998888888999998888887533333 23556777779999999887766
Q ss_pred h----HHHHHHHHHHHHhcccccch
Q 012677 311 P----LAMKDVASAIFSLCILLENK 331 (458)
Q Consensus 311 ~----~~~~~a~~aL~~L~~~~~~~ 331 (458)
+ .+...+-..|..+|.++..-
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcc
Confidence 6 88888899999998876543
No 359
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.00 E-value=98 Score=31.49 Aligned_cols=138 Identities=10% Similarity=0.069 Sum_probs=81.4
Q ss_pred hcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhcccccchhHHHhhCcHHH--
Q 012677 266 RTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRV-- 342 (458)
Q Consensus 266 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~-- 342 (458)
.+++..++..|+..|.|.+...+.+..-...-.+..++.-|.+ .+.+++..++.+|..+...-.++. ++.+.++.
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~--l~~~~l~ial 345 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD--LESYLLNIAL 345 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc--hhhhchhHHH
Confidence 3457788999999999998874332222223345556655544 478899999998887765555444 33333333
Q ss_pred -HHHHhccC--CcHHHHHHHHHHhcC--CHHHHHHHHh--cCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 343 -ILRKIMEN--SLVDELLAILAMLSS--HQDAIEEIGE--LGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 343 -Lv~ll~~~--~~~~~a~~~L~~La~--~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
+..+..+. +++..+..++..|+. ....+..+.+ .+...+|+-.+++.. +.+- .|++.....|.
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~-p~va-~ACr~~~~~c~ 415 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN-PYVA-RACRSELRTCY 415 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC-hHHH-HHHHHHHHhcC
Confidence 34444444 678888888777776 3445555543 233455666666543 5443 34444444443
No 360
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=71.81 E-value=94 Score=33.85 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=111.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHH
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV 335 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 335 (458)
..|.++..++...+.++.+....+..+-...+. .........++.++.+-......++......+..++.... ..+.
T Consensus 438 llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~ 515 (759)
T KOG0211|consen 438 LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFF 515 (759)
T ss_pred cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHh
Confidence 556677777777888888888777665443332 3334445567777777666667788888888877766544 2233
Q ss_pred hhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhH
Q 012677 336 HAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRT 413 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 413 (458)
+.-..+.+..-+.+. .+++.|+..+..++..-. .... ..-.++.++.+..+. +-..+...+-++..|+.--..
T Consensus 516 ~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~-~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~-- 590 (759)
T KOG0211|consen 516 DEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWA-RLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQ-- 590 (759)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchh-HHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhcc--
Confidence 322333333333333 577777777766655211 1111 112256666555533 245555555555555543322
Q ss_pred HHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 414 REIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 414 ~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.+.. .-.++.+..+..+..+.++-+++..|..+-+.
T Consensus 591 -ei~~-~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 591 -EITC-EDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred -HHHH-HHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 2222 45788888988888899999999988877644
No 361
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.77 E-value=2 Score=38.99 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=37.4
Q ss_pred CCCCCccccccccccccCCcc----CCC-----cccccHHHHHHHHhcCC-------CCCCCCCccCC
Q 012677 74 LGLPYEFRCPISGEIMTDPVV----LAN-----GQTFDRPCIQRWLDEGN-------RTCPQTRQVLS 125 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~----l~c-----gh~fc~~ci~~~~~~~~-------~~CP~c~~~l~ 125 (458)
++...+-.|=||+..=+|-.. -|| .|..|.+|+.+|+.+.. -.||.|++...
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 345667789999987776432 254 36789999999997421 27999998753
No 362
>PLN02195 cellulose synthase A
Probab=71.39 E-value=2.8 Score=45.89 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=35.6
Q ss_pred ccccccccc-----cCCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 81 RCPISGEIM-----TDPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 81 ~C~ic~~~~-----~~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.|-||++.. -+|.+- .||.-.||.|.+-=-++|+..||.|++...
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 599999854 245443 599999999996656778899999998876
No 363
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=70.54 E-value=3.7 Score=38.40 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=29.7
Q ss_pred CCcccccccccccc--------------C---C--ccCCCcccccHHHHHHHHhc---------CCCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMT--------------D---P--VVLANGQTFDRPCIQRWLDE---------GNRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~--------------~---p--~~l~cgh~fc~~ci~~~~~~---------~~~~CP~c~~~l~~ 126 (458)
+.+-.||+|..+-. | | ...||||. |..=-..||.+ .+..||+|.+.+.-
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 34667999986421 2 1 13489995 44444445442 13379999988764
No 364
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=70.43 E-value=95 Score=29.08 Aligned_cols=211 Identities=15% Similarity=0.063 Sum_probs=121.9
Q ss_pred cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCC
Q 012677 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLA 257 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~ 257 (458)
+.+...|.+|+..|......-+... +. ..-+..|+++..+.. .|......++..|..|..........+.. +
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~--L~--~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~~~--i 81 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDF--LS--RQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKMKNFSPESAVK--I 81 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhh--cc--HHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhCcCCChhhHHH--H
Confidence 4667888899999987776555332 22 234667776665432 25555655667666666433311111110 2
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcC-ChHHHHHHHHHHHHhcccccchh
Q 012677 258 IPLLIDSVR--TGTIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEG-HPLAMKDVASAIFSLCILLENKR 332 (458)
Q Consensus 258 i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~ 332 (458)
+..+.+-.. +-....|..+..+|..|..+ ....+.. .+.+..++++++.. ||+....+-..+..+...-+.
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-- 157 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-- 157 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--
Confidence 222222111 12356677777777777554 2333332 34677777777664 888888888877777554442
Q ss_pred HHHhhCcHHHHHHHhcc------------C-Cc-HHH-HHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhH
Q 012677 333 RAVHAGAVRVILRKIME------------N-SL-VDE-LLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 333 ~i~~~g~v~~Lv~ll~~------------~-~~-~~~-a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 397 (458)
....+-|.+.+.. + .+ ++. .......|++++.-... ++|.|++-|.++ +..++..
T Consensus 158 ----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~-----~~p~LleKL~s~-~~~~K~D 227 (262)
T PF14500_consen 158 ----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPF-----AFPLLLEKLDST-SPSVKLD 227 (262)
T ss_pred ----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHH-----HHHHHHHHHcCC-CcHHHHH
Confidence 2344445555531 1 22 333 33333445556654433 489999999965 5889999
Q ss_pred HHHHHHHHhccCc
Q 012677 398 CAAILYNICFTDR 410 (458)
Q Consensus 398 a~~~L~~L~~~~~ 410 (458)
++.+|...+...+
T Consensus 228 ~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 228 SLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHCC
Confidence 9999998776554
No 365
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.21 E-value=3.2 Score=42.20 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=30.0
Q ss_pred CCccccccccccccC-CccCCCcccccHHHHHHHHhc
Q 012677 77 PYEFRCPISGEIMTD-PVVLANGQTFDRPCIQRWLDE 112 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~-p~~l~cgh~fc~~ci~~~~~~ 112 (458)
.....|.||.+...+ .+.+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 455789999988876 556689999999999999873
No 366
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=70.14 E-value=5 Score=27.35 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=21.6
Q ss_pred ccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 012677 99 QTFDRPCIQRWLDEGNRTCPQTRQVLSHTV 128 (458)
Q Consensus 99 h~fc~~ci~~~~~~~~~~CP~c~~~l~~~~ 128 (458)
.|||..|....+. ..||-|+-.+....
T Consensus 29 CTFC~~C~e~~l~---~~CPNCgGelv~RP 55 (57)
T PF06906_consen 29 CTFCADCAETMLN---GVCPNCGGELVRRP 55 (57)
T ss_pred CcccHHHHHHHhc---CcCcCCCCccccCC
Confidence 3899999999884 36999998876543
No 367
>PLN02400 cellulose synthase
Probab=69.58 E-value=2.1 Score=47.36 Aligned_cols=47 Identities=26% Similarity=0.451 Sum_probs=36.3
Q ss_pred cccccccccccc-----CCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 79 EFRCPISGEIMT-----DPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 79 ~~~C~ic~~~~~-----~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.-.|-||++..- +|.+. .||--.||.|.+-=.+.+++.||.|++...
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 347999998652 35443 588889999996556778899999998876
No 368
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=69.57 E-value=33 Score=28.71 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=56.3
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh------CCHHHHHHHHHHHHHHHh
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN------GTSRAKRKANGILERLNK 450 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 450 (458)
++..|.+-|.+. ++.++..|+.+|..+..+-+......+....++.-|++++.. .+..++++...++..-+.
T Consensus 39 a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 466777788754 599999999999999987666665666667888889998853 357899999998887654
No 369
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.50 E-value=81 Score=36.60 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=73.6
Q ss_pred cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccc--hhHHHhhCcHHHHHHHhccC-CcHHHHHHHHHHhcC-CHHHHH
Q 012677 296 LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLEN--KRRAVHAGAVRVILRKIMEN-SLVDELLAILAMLSS-HQDAIE 371 (458)
Q Consensus 296 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~--~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~La~-~~~~~~ 371 (458)
.+.+..++..|..+...+|..|+.+|.++..-++. ...-+..|+...+. .+. .+++.|+..+..... .++.-.
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~---DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN---DSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc---cchhHHHHHHHHHHhhhhhccHHHHH
Confidence 34667777888878889999999999999886652 22234444444332 233 689999999886544 666555
Q ss_pred HHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch
Q 012677 372 EIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRT 411 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 411 (458)
++. ..+.+-+.+. +..++..++++|+.+|...++
T Consensus 892 qyY-----~~i~erIlDt-gvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDT-GVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred HHH-----HHHHhhcCCC-chhHHHHHHHHHHHHHHhCCC
Confidence 543 3344444433 489999999999999987774
No 370
>PF14353 CpXC: CpXC protein
Probab=69.27 E-value=3.5 Score=33.90 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=26.0
Q ss_pred cccccccccccCCccCCCcccccHHHHHHHHhcCC---CCCCCCCccCC
Q 012677 80 FRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGN---RTCPQTRQVLS 125 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~---~~CP~c~~~l~ 125 (458)
.+||-|+..+.-.+-..-.-.....-..+-+. |. .+||.|+..+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~-g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILD-GSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHc-CCcCEEECCCCCCcee
Confidence 46888888776544332222233444444443 32 38999987754
No 371
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=68.94 E-value=4.9 Score=42.60 Aligned_cols=50 Identities=18% Similarity=0.407 Sum_probs=37.1
Q ss_pred CCccccccccc--cccCCccCCCcc-----cccHHHHHHHHhcC-CCCCCCCCccCCC
Q 012677 77 PYEFRCPISGE--IMTDPVVLANGQ-----TFDRPCIQRWLDEG-NRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~--~~~~p~~l~cgh-----~fc~~ci~~~~~~~-~~~CP~c~~~l~~ 126 (458)
.|.-.|-||.. .-.||..-||.. ..|++|+.+|+..+ ...|-.|..++..
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 45578999974 445788778754 36999999999743 4589999977643
No 372
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=68.91 E-value=3.9 Score=45.14 Aligned_cols=48 Identities=27% Similarity=0.517 Sum_probs=37.1
Q ss_pred Ccccccccccccc-----CCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 78 YEFRCPISGEIMT-----DPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 78 ~~~~C~ic~~~~~-----~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
....|-||++..- +|.+- .||.-.|+.|.+-=.+.++..||.|++...
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4457999998652 45443 588889999996667778899999998875
No 373
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=68.88 E-value=16 Score=28.17 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=51.3
Q ss_pred HHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch
Q 012677 340 VRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRT 411 (458)
Q Consensus 340 v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 411 (458)
....+..+.++ +++..++..|..|..... ...+-..+.+..+...|++. ++-+--+|+..|..|+...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH
Confidence 34456667777 789999999999987555 22222234567777788865 489999999999999987765
No 374
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=68.77 E-value=6.1 Score=27.52 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=12.7
Q ss_pred CCCCCCCCCccCCCCCC
Q 012677 113 GNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 113 ~~~~CP~c~~~l~~~~~ 129 (458)
.|.+||+|+.+++.+..
T Consensus 2 ~HkHC~~CG~~Ip~~~~ 18 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDES 18 (59)
T ss_pred CCCcCCcCCCcCCcchh
Confidence 36789999988876543
No 375
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=68.39 E-value=70 Score=27.02 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--HHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 353 VDELLAILAMLSSHQDAIEEIGELGA--IPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 353 ~~~a~~~L~~La~~~~~~~~i~~~g~--i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
...|+..|..| .|| |.+|+++|.++ +..+...|+.+|.+..--.
T Consensus 80 ~~~Av~LLGtM------------~GGYNV~~LI~~L~~~-d~~lA~~Aa~aLk~TlLvy 125 (154)
T PF11791_consen 80 PAEAVELLGTM------------LGGYNVQPLIDLLKSD-DEELAEEAAEALKNTLLVY 125 (154)
T ss_dssp HHHHHHHHTTS-------------SSTTHHHHHHGG--G--TTTHHHHHHHHHT--TTC
T ss_pred HHHHHHHHhhc------------cCCCcHHHHHHHHcCC-cHHHHHHHHHHHHhhHHHH
Confidence 55577776666 243 99999999854 4899999999998866544
No 376
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=67.52 E-value=50 Score=35.14 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=46.4
Q ss_pred CHHHHHHHHh----cCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC---ChHHHHHHHHHHHHhccccc
Q 012677 257 AIPLLIDSVR----TGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG---HPLAMKDVASAIFSLCILLE 329 (458)
Q Consensus 257 ~i~~Lv~lL~----~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~~L~~~~~ 329 (458)
+++.|...|. .++.+.+..++.+|.|+-. ...++.|...+... +..+|..|++||..++....
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 5565665554 3466777788888888743 34677777777655 56788888888887744332
Q ss_pred chhHHHhhCcHHHHHHHhccC
Q 012677 330 NKRRAVHAGAVRVILRKIMEN 350 (458)
Q Consensus 330 ~~~~i~~~g~v~~Lv~ll~~~ 350 (458)
.. +.+.|+.++.+.
T Consensus 557 ~~-------v~~~l~~I~~n~ 570 (618)
T PF01347_consen 557 EK-------VREILLPIFMNT 570 (618)
T ss_dssp HH-------HHHHHHHHHH-T
T ss_pred HH-------HHHHHHHHhcCC
Confidence 22 334556666544
No 377
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.16 E-value=12 Score=30.45 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=24.0
Q ss_pred CCCccccccccc-cccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 76 LPYEFRCPISGE-IMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 76 ~~~~~~C~ic~~-~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
+.++.+|-||.. -|.| -||| -|..|- ...|-.|+-..+
T Consensus 62 v~ddatC~IC~KTKFAD----G~GH-~C~YCq-------~r~CARCGGrv~ 100 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFAD----GCGH-NCSYCQ-------TRFCARCGGRVS 100 (169)
T ss_pred cCcCcchhhhhhccccc----ccCc-ccchhh-------hhHHHhcCCeee
Confidence 456778999985 3444 3888 455663 335666765544
No 378
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=66.57 E-value=28 Score=29.02 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-CHH---HHHHHHHHHHHHHhhH
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG-TSR---AKRKANGILERLNKAA 452 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~---~~~~A~~~L~~l~~~~ 452 (458)
+..|-+-|.+. ++.++..|+.+|..+..+.+......+....++..|.+++.+. ... +++++..+|......-
T Consensus 44 ~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 44 ARALRKRLKHG-NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 56677778864 5999999999999999987666666666667889999988754 333 7999988887766443
No 379
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.50 E-value=56 Score=31.16 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=72.4
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCH-HHHHHHH
Q 012677 299 MTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQ-DAIEEIG 374 (458)
Q Consensus 299 i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~-~~~~~i~ 374 (458)
+...+..|.+.+-+....++..|..|+..+. ...... ..++-.+++-+++. .+...|+.++..|...- ..-..
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4445566666677777777777777776554 111111 23555566666655 46666777777776522 11111
Q ss_pred hcCCHHHHHH-HHhh--cCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHH
Q 012677 375 ELGAIPCLLR-IIRE--STCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANG 443 (458)
Q Consensus 375 ~~g~i~~Lv~-ll~~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~ 443 (458)
.+..++. |+.. .++.-+++.|-.+|-.+..+-... . +++.|...+++.+++++.+++.
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--~------~L~~L~~~~~~~n~r~r~~a~~ 227 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--K------LLRKLIPILQHSNPRVRAKAAL 227 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--H------HHHHHHHHHhhhchhhhhhhhc
Confidence 2333333 3322 234678889999998888765321 1 2334444455556666666554
No 380
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=66.47 E-value=30 Score=35.88 Aligned_cols=104 Identities=12% Similarity=0.192 Sum_probs=74.3
Q ss_pred cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC---CHHHH
Q 012677 296 LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS---HQDAI 370 (458)
Q Consensus 296 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~---~~~~~ 370 (458)
.|.+..+++-+.+.+..++..++..|..++..-......+-.|.+..|.+-+.+. .++..|+.+|..+-. +++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 4567788888888899999999999988876655555566678888888777665 577888888877644 44443
Q ss_pred HHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 371 EEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 371 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
. +..|+.++++..+.+++..|+ .||...+
T Consensus 170 ~-------~n~l~~~vqnDPS~EVRr~al---lni~vdn 198 (885)
T COG5218 170 I-------VNLLKDIVQNDPSDEVRRLAL---LNISVDN 198 (885)
T ss_pred H-------HHHHHHHHhcCcHHHHHHHHH---HHeeeCC
Confidence 2 346788888777777777654 4554433
No 381
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.20 E-value=23 Score=39.59 Aligned_cols=88 Identities=19% Similarity=0.193 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHh
Q 012677 352 LVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA 430 (458)
Q Consensus 352 ~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll 430 (458)
++..|.-+|+.+.. +.+ +.+. .+|.|..+|..++++.++.+++-+|.-++...++- + .-+.+.|..-+
T Consensus 939 Lq~AAtLaL~klM~iSa~----fces-~l~llftimeksp~p~IRsN~VvalgDlav~fpnl----i--e~~T~~Ly~rL 1007 (1251)
T KOG0414|consen 939 LQAAATLALGKLMCISAE----FCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL----I--EPWTEHLYRRL 1007 (1251)
T ss_pred HHHHHHHHHHHHhhhhHH----HHHH-HHHHHHHHHhcCCCceeeecchheccchhhhcccc----c--chhhHHHHHHh
Confidence 55555555555543 222 2222 36888888887777999999999999999877653 2 23677888888
Q ss_pred hhCCHHHHHHHHHHHHHHHh
Q 012677 431 ENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 431 ~~~~~~~~~~A~~~L~~l~~ 450 (458)
++.++.+++.|..+|..|=-
T Consensus 1008 ~D~~~~vRkta~lvlshLIL 1027 (1251)
T KOG0414|consen 1008 RDESPSVRKTALLVLSHLIL 1027 (1251)
T ss_pred cCccHHHHHHHHHHHHHHHH
Confidence 88889999999988887643
No 382
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=66.13 E-value=2.5 Score=39.51 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=29.4
Q ss_pred ccccccccccc-cCCccCCCcccccHHHHHHHHhcCCCCCCCCCccC
Q 012677 79 EFRCPISGEIM-TDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 79 ~~~C~ic~~~~-~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l 124 (458)
-..|.-|.... .--..+||.|.||..|-... ..+.||.|...+
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcC---ccccCcCcccHH
Confidence 45677786533 33456799999999996432 245899997554
No 383
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=66.07 E-value=93 Score=30.67 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=60.5
Q ss_pred cHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCCh-hHHhHHHHHHHHHhccCchhHH
Q 012677 339 AVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCE-RNKENCAAILYNICFTDRTRTR 414 (458)
Q Consensus 339 ~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~~a~~~L~~L~~~~~~~~~ 414 (458)
-|..+++-|.++ .++..++.-|+.-+.+++-+..+..+|.+..+++.+.+..+. ...-.++.+++.++..... .
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~--~ 99 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN--M 99 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc--h
Confidence 344555555532 567778877888888999999999999999999999654333 3333444444555544432 2
Q ss_pred HHHHhhhhhHHHHHHhh
Q 012677 415 EIMEEENANGTLSRLAE 431 (458)
Q Consensus 415 ~~~~~~g~~~~L~~ll~ 431 (458)
.++...+....+.+|+.
T Consensus 100 ~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhhchhHHHHHHHHhc
Confidence 55555677777777776
No 384
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=65.52 E-value=6 Score=37.62 Aligned_cols=48 Identities=29% Similarity=0.450 Sum_probs=35.2
Q ss_pred cccccccccc--cCCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 012677 80 FRCPISGEIM--TDPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV 128 (458)
Q Consensus 80 ~~C~ic~~~~--~~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~ 128 (458)
-.||||.+.+ .|--.+ +||+..|..|...-.. ++..||.|+++.....
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccccCc
Confidence 4699999877 333344 5898888888877665 5778999997665443
No 385
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=65.14 E-value=7.1 Score=26.74 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=19.3
Q ss_pred CCCCCCCCCccCCCCCCcccHHHHHHHH
Q 012677 113 GNRTCPQTRQVLSHTVLIPNHLVREMIS 140 (458)
Q Consensus 113 ~~~~CP~c~~~l~~~~~~~n~~l~~~i~ 140 (458)
.|..||+|+++++.+...-....+.+.+
T Consensus 7 PH~HC~VCg~aIp~de~~CSe~C~eil~ 34 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQVCSEECGEILN 34 (64)
T ss_pred CCccccccCCcCCCccchHHHHHHHHHH
Confidence 3678999999998776555555555443
No 386
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=65.09 E-value=97 Score=30.69 Aligned_cols=180 Identities=11% Similarity=-0.020 Sum_probs=105.4
Q ss_pred cCCHHHHHHHHHHHHHhhccCcc---hhHhhccCchHHHHHHhhc-----------CChHHHHHHHHHHHHhcccccchh
Q 012677 267 TGTIETRRNAAAALFSLSALDSN---KLIIGKLGAMTPLIDLLEE-----------GHPLAMKDVASAIFSLCILLENKR 332 (458)
Q Consensus 267 ~~~~~~~~~a~~~L~~Ls~~~~~---~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~aL~~L~~~~~~~~ 332 (458)
..+.+.|..|-..|.+.-...++ ...+.+ -++.+++.++. .+.++..+|+.+|..+..+++.-.
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 34556677777777665443333 223322 24445544421 155677889999998887776444
Q ss_pred HHHhh---CcHHHHHHHhccCCc-HHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhh----cCChhHHhHHHHHHHH
Q 012677 333 RAVHA---GAVRVILRKIMENSL-VDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRE----STCERNKENCAAILYN 404 (458)
Q Consensus 333 ~i~~~---g~v~~Lv~ll~~~~~-~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~a~~~L~~ 404 (458)
.+-+. -.+...+..+.++.. +.-+...|.-|+... -...+....-+..|+..+.. -.+..+....+.++.+
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-FSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 43222 256666777766632 333444444444311 11113333444555544432 3457888899999999
Q ss_pred HhccCchhHHHHHHhh-hhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 405 ICFTDRTRTREIMEEE-NANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 405 L~~~~~~~~~~~~~~~-g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
|....+..+ .... -..+.++..+.+....++.+|..++..+...-
T Consensus 161 ll~q~p~~M---~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l 206 (372)
T PF12231_consen 161 LLSQFPQQM---IKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCL 206 (372)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh
Confidence 999886542 3333 38888888877777788888888877766443
No 387
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=65.06 E-value=2e+02 Score=30.79 Aligned_cols=131 Identities=13% Similarity=0.048 Sum_probs=84.2
Q ss_pred cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHH
Q 012677 296 LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEE 372 (458)
Q Consensus 296 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~ 372 (458)
..++|.|..-+++.+..++..++..+-..+..-+ ...+..-++|.|-.+.... .++..++.++..+.. .-.+..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-~lD~~~ 464 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-RLDKAA 464 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-HHHHHH
Confidence 3467777778888889999999999888876555 4456666788887775433 466778888887771 111112
Q ss_pred HHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCC
Q 012677 373 IGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGT 434 (458)
Q Consensus 373 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 434 (458)
+++ -+.++.+.++. .++.+....+.+..++....... ..++. ...+|.+..+.-.+.
T Consensus 465 v~d--~~lpi~~~~~~-~dp~iv~~~~~i~~~l~~~~~~g-~ev~~-~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 465 VLD--ELLPILKCIKT-RDPAIVMGFLRIYEALALIIYSG-VEVMA-ENVLPLLIPLSVAPS 521 (700)
T ss_pred hHH--HHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhcccc-eeeeh-hhhhhhhhhhhhccc
Confidence 222 24444555543 34888888888888887755442 13332 567777777765554
No 388
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=65.01 E-value=31 Score=26.92 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=48.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
.+..|+.-+..++....+.+...|..|..++.....+.+-|+++.|-++=..-++..+...-..+
T Consensus 31 Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 31 LLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44556666677777788999999999999998899999999999977765555665555444443
No 389
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=64.72 E-value=5.3 Score=24.10 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=7.2
Q ss_pred CCCCCCCCcc
Q 012677 114 NRTCPQTRQV 123 (458)
Q Consensus 114 ~~~CP~c~~~ 123 (458)
...||.|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4579998764
No 390
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.57 E-value=90 Score=33.29 Aligned_cols=149 Identities=16% Similarity=0.175 Sum_probs=89.8
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhh-ccCcc-----hhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc-cccc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLS-ALDSN-----KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC-ILLE 329 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls-~~~~~-----~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~ 329 (458)
.-|.|.+-|+..|..+|.+|+-.+.++- ..+++ ...+.+. -...|.++|+++-+.+|..|..-+.... ..-+
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 3456677788889999999999998874 22222 2334443 3778999999999999987776555432 2222
Q ss_pred chhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHh
Q 012677 330 NKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNIC 406 (458)
Q Consensus 330 ~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 406 (458)
....-+=-.++..++.-+..+ +++.....-|-.|..+|.....+ +. ++|.|-..|.+. +++++.+++..|..|=
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l-e~-~Lpal~~~l~D~-se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL-EQ-LLPALRYSLHDN-SEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH-HH-HHHhcchhhhcc-chhHHHHHHHHHHHHH
Confidence 111111111222223223222 56666666777777766544333 22 256666667754 5899999998888775
Q ss_pred ccC
Q 012677 407 FTD 409 (458)
Q Consensus 407 ~~~ 409 (458)
...
T Consensus 331 ~vr 333 (1005)
T KOG1949|consen 331 AVR 333 (1005)
T ss_pred hhh
Confidence 443
No 391
>PRK14707 hypothetical protein; Provisional
Probab=64.40 E-value=3.4e+02 Score=33.29 Aligned_cols=256 Identities=13% Similarity=0.066 Sum_probs=119.7
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHH
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPL 260 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~ 260 (458)
....+.++..|.......+..+..+- .-+|..+++-++.. .+..-..+|+..|...-.++.....-++..|+-..
T Consensus 178 ~~~c~~aa~~la~~~~~~d~~~~~~~--~q~ia~~lNa~sKW---p~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~ 252 (2710)
T PRK14707 178 NPDCQAVAPRFAALVASDDRLRSAMD--AQGVATVLNALCKW---PDTPDCGNAVSALAERLADESRLRNELKPQELGNA 252 (2710)
T ss_pred CchHHHHHHHHHHHhcCChhhhcccc--hHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHH
Confidence 33445566666555444556666564 35677777776653 34444555556655433344444444444434443
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-HhhccCcchhHhhccCchHHHHHHh-hcCChH-HHHHHHHHHHHhcccccchhHHHhh
Q 012677 261 LIDSVRTGTIETRRNAAAALF-SLSALDSNKLIIGKLGAMTPLIDLL-EEGHPL-AMKDVASAIFSLCILLENKRRAVHA 337 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~-~~~~a~~aL~~L~~~~~~~~~i~~~ 337 (458)
|-.+-+-++..+-.+++.+|. .|+.+..-+..+...+ +.-.+.-| +-++.. .+..|...-..|..+.+-+. -++.
T Consensus 253 lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~-~~~~ 330 (2710)
T PRK14707 253 LNALSKWADTPVCAAAASALAERLVDDPGLRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCK-ALNA 330 (2710)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhh-ccch
Confidence 333444455544445555544 4443333344433332 22222323 223433 44444444455555444443 3444
Q ss_pred CcHHHHHHHhc-cC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhH
Q 012677 338 GAVRVILRKIM-EN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRT 413 (458)
Q Consensus 338 g~v~~Lv~ll~-~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 413 (458)
-.+...+.-|+ -+ ..+..+..+-..|+.+++.++.+--.| +...++-|..=.+..+...|...|..=..++.+ .
T Consensus 331 ~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~-l 408 (2710)
T PRK14707 331 RGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDTPVCAAAASALAEHVVDDLE-L 408 (2710)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCchHHHHHHHHHHHHhccChh-h
Confidence 44445555554 22 234445555556777777777764333 555666665422244444444444433333322 2
Q ss_pred HHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHH
Q 012677 414 REIMEEENANGTLSRLAENGTSRAKRKANGIL 445 (458)
Q Consensus 414 ~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L 445 (458)
+..+..-|+-..|-.|.+=.+..+-..|+..|
T Consensus 409 ~~~~~~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 409 RKGLDPQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred hhhcchhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 34444333333333333333444444444443
No 392
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.92 E-value=17 Score=37.35 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=42.0
Q ss_pred CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 377 GAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 377 g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
..++..|++|..+++..++.-.+-+|.--|.+...+. +++.|-.|+.+.++-+++.|+-++..+
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~--------a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV--------ATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH--------HHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 3577788999888888888888888887777665432 344555555555555555555554443
No 393
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=63.41 E-value=49 Score=27.33 Aligned_cols=71 Identities=7% Similarity=0.031 Sum_probs=54.9
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-C-HHHHHHHHHHHHHHHh
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG-T-SRAKRKANGILERLNK 450 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~-~~~~~~A~~~L~~l~~ 450 (458)
+..|-+-|.+ .++.++..|+.+|..+..+.+......+....++..|.+++... + +.+++++..++..-..
T Consensus 39 ~r~l~krl~~-~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 39 VRLLKKRLNN-KNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 5667777775 45999999999999999876666656666778999999988653 3 3389999888877664
No 394
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=62.22 E-value=21 Score=27.44 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE 329 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 329 (458)
...+..|.++...+|.++...|..|....+ ...+-..+++..+...|+++++-+=-+|...|..|+...+
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 335566677888899999999999987665 2222226677788888888899999999999999876554
No 395
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=62.01 E-value=2.3 Score=40.54 Aligned_cols=44 Identities=18% Similarity=0.346 Sum_probs=30.5
Q ss_pred ccccccccccccCCccC----CCc--ccccHHHHHHHHhcCCCCCCCCCcc
Q 012677 79 EFRCPISGEIMTDPVVL----ANG--QTFDRPCIQRWLDEGNRTCPQTRQV 123 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l----~cg--h~fc~~ci~~~~~~~~~~CP~c~~~ 123 (458)
.-.||+|+....--++. .=| +.+|..|=.+|--. ...||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 34799999876433332 234 45688999999764 4579999974
No 396
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=61.20 E-value=5.6 Score=42.48 Aligned_cols=44 Identities=25% Similarity=0.600 Sum_probs=33.9
Q ss_pred Ccccccccccccc--CCccC--CCcccccHHHHHHHHhcC------CCCCCCCC
Q 012677 78 YEFRCPISGEIMT--DPVVL--ANGQTFDRPCIQRWLDEG------NRTCPQTR 121 (458)
Q Consensus 78 ~~~~C~ic~~~~~--~p~~l--~cgh~fc~~ci~~~~~~~------~~~CP~c~ 121 (458)
..+.|-||.+.+. +|+-- .|=|.|+..||.+|-.+. .-.||.|.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 4567999999885 45543 488999999999997641 22799998
No 397
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.91 E-value=2.3 Score=40.62 Aligned_cols=44 Identities=30% Similarity=0.539 Sum_probs=34.5
Q ss_pred ccccccccccc------CCccCC--------CcccccHHHHHHHHhcCCCCCCCCCcc
Q 012677 80 FRCPISGEIMT------DPVVLA--------NGQTFDRPCIQRWLDEGNRTCPQTRQV 123 (458)
Q Consensus 80 ~~C~ic~~~~~------~p~~l~--------cgh~fc~~ci~~~~~~~~~~CP~c~~~ 123 (458)
-.|.||...+. -|.++. |||+.|..|+..-+......||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 45888876554 266666 999999999999887655789999864
No 398
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.88 E-value=2.7e+02 Score=31.52 Aligned_cols=80 Identities=26% Similarity=0.306 Sum_probs=64.2
Q ss_pred chhHHHhhCcHHHHHHHhc--cCCcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhh--cCChhHHhHHHHHHHH
Q 012677 330 NKRRAVHAGAVRVILRKIM--ENSLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRE--STCERNKENCAAILYN 404 (458)
Q Consensus 330 ~~~~i~~~g~v~~Lv~ll~--~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~--~~~~~~~~~a~~~L~~ 404 (458)
.+.++..+|++..|++.+- .+.++-.-+..|..++. +|.+++..-..|.+..|++++-- +.+...-.++.+++..
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 4667899999999998764 34788888999999998 88899999999999999998852 2335667788888888
Q ss_pred HhccC
Q 012677 405 ICFTD 409 (458)
Q Consensus 405 L~~~~ 409 (458)
|+...
T Consensus 980 Lgayr 984 (2799)
T KOG1788|consen 980 LGAYR 984 (2799)
T ss_pred Hhhcc
Confidence 87654
No 399
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.63 E-value=5.8 Score=39.64 Aligned_cols=68 Identities=24% Similarity=0.380 Sum_probs=50.0
Q ss_pred CCCCccccccc-cccccCCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCCC-CCCcccHHHHHHHHHHHH
Q 012677 75 GLPYEFRCPIS-GEIMTDPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH-TVLIPNHLVREMISQWCK 144 (458)
Q Consensus 75 ~~~~~~~C~ic-~~~~~~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~-~~~~~n~~l~~~i~~~~~ 144 (458)
..++.+.|++| .+.|.+-.++ .|..+||..||.+.+.. ..||.|...-.. ..+.++..++..+..-..
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLADDLLPPKTLRDTINRILA 286 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhcccccccCCchhhHHHHHHHHh
Confidence 35678899999 7888888777 48899999999998864 458888765433 345677777766665443
No 400
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=60.48 E-value=1.2 Score=42.60 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=20.5
Q ss_pred ccccccccccccCCccCCC---c--ccccHHHHHHHHhcCCCCCCCCCccC
Q 012677 79 EFRCPISGEIMTDPVVLAN---G--QTFDRPCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~c---g--h~fc~~ci~~~~~~~~~~CP~c~~~l 124 (458)
.-.||+|+....--++..- | |-+|..|=.+|--. ...||.|+..=
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNTD 221 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---S
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCCC
Confidence 3579999986654444332 5 45799999999764 44799998753
No 401
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=60.46 E-value=2e+02 Score=29.23 Aligned_cols=178 Identities=14% Similarity=0.104 Sum_probs=96.0
Q ss_pred hhhhHHhhcCC--cHHHHHHHHHHHHHHh-hCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 170 LNSLLEKMSSS--LSDQKEAAKELRLLTK-RMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 170 l~~Lv~~l~~~--~~~~~~a~~~L~~l~~-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
+..++..++++ .+.+..|+..|..+.. ++...+..... ..+..+++.|... .+...+..|+..|..++.+..
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~---~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDS---EDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccc---hhhHHHHHHHHHHHHHHHhch
Confidence 44455555543 5667788887775554 33444444333 3556677888763 477888999999999887654
Q ss_pred hhhhhhcCCCCHHHHHHHHh---cCCHHH-HHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 247 NKRLVAENPLAIPLLIDSVR---TGTIET-RRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~---~~~~~~-~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
..+.+. .--++.++|. ....++ +.++=.++.-++.++.-.. |..+..++-+.+...-..++..+.
T Consensus 363 --~~l~Ds--tE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 363 --ARLFDS--TEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLT 431 (516)
T ss_pred --Hhhhch--HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHH
Confidence 223222 3333444443 333444 3333344555666554433 223334444455555455555566
Q ss_pred HhcccccchhH-HHhhCcHHHHHHHhccC--CcHHHHHHHHHHh
Q 012677 323 SLCILLENKRR-AVHAGAVRVILRKIMEN--SLVDELLAILAML 363 (458)
Q Consensus 323 ~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~L 363 (458)
.+...-..-.. .+=..+.|.+++.-.+. .+++.|+-.|..+
T Consensus 432 kl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 432 KLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred HHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 65543321111 11135777777777655 4666655555444
No 402
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=59.48 E-value=67 Score=32.97 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=64.9
Q ss_pred hCcHHHHHHHhccCCcHHHHHHHHHHhcCCH----HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc--
Q 012677 337 AGAVRVILRKIMENSLVDELLAILAMLSSHQ----DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR-- 410 (458)
Q Consensus 337 ~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~----~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-- 410 (458)
.+.|+.+++.+..+.+.+--+.++. +..+ ...+.+.+.+.|+.|+.+|....+..++.+|...|..|..-..
T Consensus 20 ~~~v~~llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~ 97 (475)
T PF04499_consen 20 PNFVDNLLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNA 97 (475)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 3667777776665544444333333 1122 2344446789999999999866678899999988887754322
Q ss_pred ----------hhHHHHHHhhhhhHHHHHHhh--hCCHHHHHHHHHHHHHHHhh
Q 012677 411 ----------TRTREIMEEENANGTLSRLAE--NGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 411 ----------~~~~~~~~~~g~~~~L~~ll~--~~~~~~~~~A~~~L~~l~~~ 451 (458)
+...+-+...-.+..|+..+. .+...+.--..-++..|++.
T Consensus 98 ~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 98 PQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 222233333456666666665 33333444444455555433
No 403
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=58.63 E-value=1.3e+02 Score=26.47 Aligned_cols=144 Identities=12% Similarity=0.045 Sum_probs=93.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccc-hhHH
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLEN-KRRA 334 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~-~~~i 334 (458)
.++.++++.-+.+..++..|+.+|.-+.. .-++. ..++|.|+.|..++++.++..|...+..+..-.+. ...-
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~-----qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR-----QGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh-----cCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45667777788889999999988876533 33444 44899999999999999999999999999764432 2211
Q ss_pred HhhCcHHHHHHHh---ccCC---c---HHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcC-------ChhHHhH
Q 012677 335 VHAGAVRVILRKI---MENS---L---VDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIREST-------CERNKEN 397 (458)
Q Consensus 335 ~~~g~v~~Lv~ll---~~~~---~---~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~-------~~~~~~~ 397 (458)
... |+..-.++- ..+. . ...-+.-|+.+.. +...|..+ +..|++.+.... ...-...
T Consensus 84 ~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 84 YSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence 222 233333222 2221 1 5567777888877 56677777 566677666421 2344555
Q ss_pred HHHHHHHHhccCch
Q 012677 398 CAAILYNICFTDRT 411 (458)
Q Consensus 398 a~~~L~~L~~~~~~ 411 (458)
.+-+..||+..+-.
T Consensus 158 ~~Fla~nLA~l~y~ 171 (187)
T PF12830_consen 158 LLFLAENLATLPYQ 171 (187)
T ss_pred HHHHHHHHhcCCCC
Confidence 66677777776543
No 404
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.38 E-value=8.2 Score=40.76 Aligned_cols=46 Identities=11% Similarity=0.310 Sum_probs=32.1
Q ss_pred cccccccccccCCccC--CCcccccHHHHHHHHhcCCCCCCC--CCccCCC
Q 012677 80 FRCPISGEIMTDPVVL--ANGQTFDRPCIQRWLDEGNRTCPQ--TRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~--c~~~l~~ 126 (458)
..|.+|....+.-..- -|||.-|-+|+.+|+.. +..||. |......
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~-~s~ca~~~C~~~c~~ 829 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFK-ASPCAKSICPHLCHY 829 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhc-CCCCccccCCccccc
Confidence 3577777766543332 39999999999999984 556877 6554433
No 405
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=58.17 E-value=19 Score=31.50 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=30.5
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCC-CcccHHHHHHHHHHHHH
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV-LIPNHLVREMISQWCKE 145 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~-~~~n~~l~~~i~~~~~~ 145 (458)
...+.||-|..-+. |. .-+. ..+.||.|+.++...+ -..-..++..|...-..
T Consensus 115 ~~~Y~Cp~C~~ryt----------f~-----eA~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 115 NMFFFCPNCHIRFT----------FD-----EAME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEE 168 (178)
T ss_pred CCEEECCCCCcEEe----------HH-----HHhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHH
Confidence 45778998874442 11 1122 4789999999987532 22234456666555443
No 406
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=57.92 E-value=1.3e+02 Score=26.39 Aligned_cols=142 Identities=16% Similarity=0.096 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhh-Cc----hhhhhhhhc-----cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhh
Q 012677 183 DQKEAAKELRLLTKR-MP----LFRALFGES-----TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVA 252 (458)
Q Consensus 183 ~~~~a~~~L~~l~~~-~~----~~~~~i~~~-----~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 252 (458)
+|..|+..|..+++. ++ .++..+... ...-+.|+..+-. +.++.++..|+.+|..|-.+....-..+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~---Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK---DPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc---CCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 466777777777765 22 122222220 2234445544433 2377889999998887755433111111
Q ss_pred c-----CCCCH--------------HHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHH----HHhhc
Q 012677 253 E-----NPLAI--------------PLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLI----DLLEE 308 (458)
Q Consensus 253 ~-----~~~~i--------------~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv----~lL~~ 308 (458)
+ .+.+. ..|+..|..+ +..+......+|..|..+-.+... ..|.++.++ .++.+
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHHHHHHHHHHhc
Confidence 1 11111 2455555554 677788888888888876655222 235455444 45567
Q ss_pred CChHHHHHHHHHHHHhccccc
Q 012677 309 GHPLAMKDVASAIFSLCILLE 329 (458)
Q Consensus 309 ~~~~~~~~a~~aL~~L~~~~~ 329 (458)
.|+.++..++.++..+...++
T Consensus 157 ~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 157 RDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CCCcHHHHHHHHHHHHHcCCC
Confidence 788999999988888766543
No 407
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.49 E-value=65 Score=33.37 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=63.8
Q ss_pred ccCchHHHHHH-hhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHH
Q 012677 295 KLGAMTPLIDL-LEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAI 370 (458)
Q Consensus 295 ~~g~i~~Lv~l-L~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~ 370 (458)
+.|+|..|+.. .++++.+++..|.-||.-.|..+.+ .++..+++|.+. .++...+-+|.--|.....+
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 35677777776 6677899999999999888765543 455667777655 45666666666555433222
Q ss_pred HHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 371 EEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 371 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
. ++..|-.++.+. .+-+++.|+-++..|...
T Consensus 621 ~------a~diL~~L~~D~-~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 621 V------ATDILEALMYDT-NDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred H------HHHHHHHHhhCc-HHHHHHHHHHHHHHHHhh
Confidence 1 234445555544 477788888777776653
No 408
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=57.43 E-value=1.2e+02 Score=25.94 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=69.9
Q ss_pred chHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhh--CcHHHHHHHhccC---CcHHHHHHHHHHhcC----CHH
Q 012677 298 AMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHA--GAVRVILRKIMEN---SLVDELLAILAMLSS----HQD 368 (458)
Q Consensus 298 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~--g~v~~Lv~ll~~~---~~~~~a~~~L~~La~----~~~ 368 (458)
.+..+..+|+++++..+-.++..+...+...+ ...+.+. --+..|+.+|+.+ .+.+.++.+|..|.. .++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45567778888888888877777777766543 2333332 4667788888765 355667766666654 455
Q ss_pred HHHHHHhcC---CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhH
Q 012677 369 AIEEIGELG---AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRT 413 (458)
Q Consensus 369 ~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 413 (458)
..+++.-.. .++.++.++++ ....+.++.+|..+-...+...
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccc
Confidence 444443222 34444455542 5777888888888877665443
No 409
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=56.89 E-value=6.9 Score=37.70 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=36.1
Q ss_pred ccccccccccccC----CccCCCc-----ccccHHHHHHHHh-cCCCCCCCCCccCCCC
Q 012677 79 EFRCPISGEIMTD----PVVLANG-----QTFDRPCIQRWLD-EGNRTCPQTRQVLSHT 127 (458)
Q Consensus 79 ~~~C~ic~~~~~~----p~~l~cg-----h~fc~~ci~~~~~-~~~~~CP~c~~~l~~~ 127 (458)
...|-||...... |...||. +..|+.|+..|+. .+...|..|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4789999985542 5666753 3568999999997 3456899998876544
No 410
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=56.87 E-value=80 Score=26.41 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=54.4
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHH-HHHHhhh---CCHHHHHHHHHHHHHHHhh
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGT-LSRLAEN---GTSRAKRKANGILERLNKA 451 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~-L~~ll~~---~~~~~~~~A~~~L~~l~~~ 451 (458)
++..|-+-|..+.++.++..|+.+|..+..+-+.....-+....++.- |++++.. ....++.+...++...+..
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 356666666644468899999999999998776665555666778886 8888863 2357899999998877754
No 411
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=56.36 E-value=7.2 Score=26.19 Aligned_cols=18 Identities=28% Similarity=0.746 Sum_probs=14.1
Q ss_pred CCcCCCCCCccccccccc
Q 012677 70 DDHLLGLPYEFRCPISGE 87 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~ 87 (458)
.....++++++.||+|..
T Consensus 25 Gt~f~~Lp~~w~CP~C~a 42 (50)
T cd00730 25 GTPFEDLPDDWVCPVCGA 42 (50)
T ss_pred CCCHhHCCCCCCCCCCCC
Confidence 445567899999999974
No 412
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=56.13 E-value=1.9e+02 Score=27.72 Aligned_cols=198 Identities=9% Similarity=0.060 Sum_probs=129.5
Q ss_pred hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhc-----cCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 250 LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGK-----LGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 250 ~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~-----~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
.+..+ |..+.|+..+...+-+.+..+.....++-..+-+ +...++ ...+..||.--.. .++....+-..|..
T Consensus 74 ef~~~-~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNA-DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHhC-CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 44455 5899999999999999999998888887654422 222222 3333333333111 35555555555666
Q ss_pred hcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCC----HHHHHHHHhhcCChhHHh
Q 012677 324 LCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGA----IPCLLRIIRESTCERNKE 396 (458)
Q Consensus 324 L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~----i~~Lv~ll~~~~~~~~~~ 396 (458)
...++.-..-+....-+......+..+ ++...|..+...+.. +.....++...+- ...--.++.+ .+--++.
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s-~Nyvtkr 230 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRS-ENYVTKR 230 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcc-cceehHH
Confidence 666666555667777777777777777 677788888887765 5555566655442 2334556664 5688999
Q ss_pred HHHHHHHHHhccCchh--HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 397 NCAAILYNICFTDRTR--TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 397 ~a~~~L~~L~~~~~~~--~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
.+.++|..+--..++. +..-+...-.+..+..|+.+.+..+|-.|=-+-+.+-.
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhc
Confidence 9999999988766543 33344444567788888998888888877766665543
No 413
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=55.93 E-value=68 Score=25.00 Aligned_cols=68 Identities=21% Similarity=0.196 Sum_probs=52.3
Q ss_pred CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHH
Q 012677 377 GAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILER 447 (458)
Q Consensus 377 g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~ 447 (458)
+.+..|++.....+ ...++.++..|..|...+... .++.+-|++..|.++-...++..+.....++..
T Consensus 30 ~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~~~~a~--~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 30 LLLKQLLEWFNFPP-VPMKEEVLALLLRLLKSPYAA--QILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHHHHHHHhCCCC-CccHHHHHHHHHHHHhCcHHH--HHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 44666777777544 668999999999999988653 777789999998888877778787777777654
No 414
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=55.31 E-value=1.1e+02 Score=25.18 Aligned_cols=125 Identities=10% Similarity=0.077 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC---------cch-----hHhhc
Q 012677 230 LLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD---------SNK-----LIIGK 295 (458)
Q Consensus 230 ~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~---------~~~-----~~i~~ 295 (458)
++.+.+.++..++..+=.. .=...++.++.++++ ++........+|..+...- ..+ ..+.+
T Consensus 4 i~~kl~~~l~~i~~~~~P~----~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQ----QWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTT----TSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChh----hCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 3445555555555433100 012356667777666 3555555666665554311 011 11222
Q ss_pred --cCchHHHHHHhhcCC----hHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHH
Q 012677 296 --LGAMTPLIDLLEEGH----PLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAIL 360 (458)
Q Consensus 296 --~g~i~~Lv~lL~~~~----~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L 360 (458)
..++..+.+++.... .+....++.++..... .-....+...+.++.+.++|.++.++..|+.+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 234445555555432 7788889999888877 333445666789999999998888888888765
No 415
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=55.30 E-value=8.4 Score=21.16 Aligned_cols=8 Identities=25% Similarity=0.596 Sum_probs=3.7
Q ss_pred CCCCCCcc
Q 012677 116 TCPQTRQV 123 (458)
Q Consensus 116 ~CP~c~~~ 123 (458)
.||.|+.+
T Consensus 15 fC~~CG~~ 22 (23)
T PF13240_consen 15 FCPNCGTP 22 (23)
T ss_pred chhhhCCc
Confidence 35555443
No 416
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=54.93 E-value=13 Score=29.46 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHH
Q 012677 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRR 274 (458)
Q Consensus 229 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~ 274 (458)
--....+..|..|+..++-...+++.| +++.|+.+|.+.|.++..
T Consensus 61 ~dLd~~Ik~l~~La~~P~LYp~lv~l~-~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 61 VDLDEEIKKLSVLATAPELYPELVELG-AVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHHHccCChhHHHHHHHcC-CHHHHHHHHCCCCcceeh
Confidence 334567778888999999889999875 999999999998877644
No 417
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=54.71 E-value=3.2e+02 Score=30.26 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=97.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHh-hccCchHHHHHHh-hcCChHHHHHHHHHHHHhcccccchhHHHhh
Q 012677 260 LLIDSVRTGTIETRRNAAAALFSLSALDSNKLII-GKLGAMTPLIDLL-EEGHPLAMKDVASAIFSLCILLENKRRAVHA 337 (458)
Q Consensus 260 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~ 337 (458)
.+-.-+.+.+..-|..|+.-+........ .... ...|.+-.++... .+.+..+...|+..|..|+..-..-..-...
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 33334445566667766666655544333 1111 1134444444433 3346777888888888887644333333445
Q ss_pred CcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch--hH
Q 012677 338 GAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRT--RT 413 (458)
Q Consensus 338 g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~--~~ 413 (458)
++.+.|+.-+.+. .+++.++.++-..+.. ..-.-..+.+...+++. ++..+..+...+.......+. ..
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 7788888888765 4555544444433330 00011245556677754 488888877777665544331 11
Q ss_pred HHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 414 REIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 414 ~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
+..+ .+.++.++....+-+..++..|..++..+
T Consensus 409 ~~t~--~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 409 KETV--KTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred hhhH--HHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 1222 34556666666666666776666655443
No 418
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=54.58 E-value=8.8 Score=30.50 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=8.9
Q ss_pred CCCCCCCCccCCCC
Q 012677 114 NRTCPQTRQVLSHT 127 (458)
Q Consensus 114 ~~~CP~c~~~l~~~ 127 (458)
.-.||.|+..+...
T Consensus 26 PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 26 PIVCPKCGTEFPPE 39 (108)
T ss_pred CccCCCCCCccCcc
Confidence 34677777766544
No 419
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.99 E-value=3.6e+02 Score=30.16 Aligned_cols=130 Identities=12% Similarity=0.102 Sum_probs=76.2
Q ss_pred CCHHHHHHHHh------cC--CHHHHHHHHHHHHHhhccC----cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 256 LAIPLLIDSVR------TG--TIETRRNAAAALFSLSALD----SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 256 ~~i~~Lv~lL~------~~--~~~~~~~a~~~L~~Ls~~~----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
++++.+++.|. .+ ++.-+..|..++++|+..= ..+ ...+.=.+..+...++++.--.|..|++.+..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 36777778776 22 4556777777788776311 112 22223345556666777777789999999999
Q ss_pred hcccc-cchhHHHhhCcHHHHHHHhc-cC--CcHHHHHHHHHHhcCCHH-HHHHHHhc--CCHHHHHHHHhh
Q 012677 324 LCILL-ENKRRAVHAGAVRVILRKIM-EN--SLVDELLAILAMLSSHQD-AIEEIGEL--GAIPCLLRIIRE 388 (458)
Q Consensus 324 L~~~~-~~~~~i~~~g~v~~Lv~ll~-~~--~~~~~a~~~L~~La~~~~-~~~~i~~~--g~i~~Lv~ll~~ 388 (458)
.+..+ .+...+ ..++....+.|. +. +++..|+-+|..+-++.. ....+... +.+..|+.+.+.
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 98433 222221 224444555555 44 788888888888877544 33333221 234445555543
No 420
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=53.73 E-value=2.1e+02 Score=27.43 Aligned_cols=123 Identities=13% Similarity=0.141 Sum_probs=82.2
Q ss_pred hHhhccCchHHHHHHhhc-----------------------CChHHHHHHHHHHHHhcccccchhHH-------------
Q 012677 291 LIIGKLGAMTPLIDLLEE-----------------------GHPLAMKDVASAIFSLCILLENKRRA------------- 334 (458)
Q Consensus 291 ~~i~~~g~i~~Lv~lL~~-----------------------~~~~~~~~a~~aL~~L~~~~~~~~~i------------- 334 (458)
..+.+.|.||.|-++++. ++...+.+-++.+.+++.+++++..+
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 356667888887777642 11236778888888888855433211
Q ss_pred ---------HhhCcHHHHHHHhccC----CcH---HHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcC--ChhHHh
Q 012677 335 ---------VHAGAVRVILRKIMEN----SLV---DELLAILAMLSSHQDAIEEIGELGAIPCLLRIIREST--CERNKE 396 (458)
Q Consensus 335 ---------~~~g~v~~Lv~ll~~~----~~~---~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~ 396 (458)
-+.|.+..+++.+... ..+ ..|+.+...-+....-+..+.+.|.+..|+..+-++. +..+-+
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 1347888888877644 233 3345544444444466777899999999998777543 346888
Q ss_pred HHHHHHHHHhccCchhH
Q 012677 397 NCAAILYNICFTDRTRT 413 (458)
Q Consensus 397 ~a~~~L~~L~~~~~~~~ 413 (458)
..--.|..|.+++....
T Consensus 163 ~~FDLLGELiK~n~~~f 179 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAF 179 (303)
T ss_pred HHHHHHHHHHCCCHHHH
Confidence 89999999999887544
No 421
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=53.08 E-value=21 Score=38.00 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=59.7
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcC---CHHHHHHHHHHHHHhhcc
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTG---TIETRRNAAAALFSLSAL 286 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~---~~~~~~~a~~~L~~Ls~~ 286 (458)
..++.|...|.......+...+..++.+|+|+-.. ..++.|...+... +..+|..|+++|..++..
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 45666666665322224667888899999998632 2556566655554 678899999998877443
Q ss_pred CcchhHhhccCchHHHHHHhhcC--ChHHHHHHHHHHHH
Q 012677 287 DSNKLIIGKLGAMTPLIDLLEEG--HPLAMKDVASAIFS 323 (458)
Q Consensus 287 ~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~ 323 (458)
... -+.+.|..++.+. +.++|..|..+|..
T Consensus 555 ~~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 555 CPE-------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred CcH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 211 2356677777663 67888888777665
No 422
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=52.85 E-value=77 Score=29.53 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=40.9
Q ss_pred cCchHHHHHHhhc--CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-C-cHHHHHHHHH
Q 012677 296 LGAMTPLIDLLEE--GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-S-LVDELLAILA 361 (458)
Q Consensus 296 ~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~-~~~~a~~~L~ 361 (458)
.-+|+.|.+.|.+ .++.+|..|+.||..++ +...++.|.+++.++ . +++.|..+|-
T Consensus 217 ~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 217 PAAIPSLIKVLLDETEHPMVRHEAAEALGAIA----------DEDCVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc----------CHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5579999998866 38899999999998874 345677788888877 3 4455554443
No 423
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.83 E-value=16 Score=30.72 Aligned_cols=90 Identities=18% Similarity=0.288 Sum_probs=48.6
Q ss_pred cccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHH-H--HHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhH
Q 012677 98 GQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHL-V--REMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLL 174 (458)
Q Consensus 98 gh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~-l--~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv 174 (458)
-+.||..|=.+-+. .||.|..++.-..-.+... + .--.-.||...|...|=+.. --++.+.|+
T Consensus 27 ~~~fC~kCG~~tI~----~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~----------~L~aa~el~ 92 (158)
T PF10083_consen 27 REKFCSKCGAKTIT----SCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWTEN----------ALEAANELI 92 (158)
T ss_pred HHHHHHHhhHHHHH----HCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchHHH----------HHHHHHHHH
Confidence 45799999777665 4999999987543222110 0 01155788887876663321 112344455
Q ss_pred Hhhc-CCcHHHHHHHHHHHHHHhhCchh
Q 012677 175 EKMS-SSLSDQKEAAKELRLLTKRMPLF 201 (458)
Q Consensus 175 ~~l~-~~~~~~~~a~~~L~~l~~~~~~~ 201 (458)
+.+. -+++++..--..|..|..++|..
T Consensus 93 ee~eeLs~deke~~~~sl~dL~~d~PkT 120 (158)
T PF10083_consen 93 EEDEELSPDEKEQFKESLPDLTKDTPKT 120 (158)
T ss_pred HHhhcCCHHHHHHHHhhhHHHhhcCCcc
Confidence 5442 23444444444555555554433
No 424
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=52.41 E-value=3.4e+02 Score=29.39 Aligned_cols=139 Identities=13% Similarity=0.082 Sum_probs=91.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHH-hhcCChHHHHHHHHHHHHhcccccchhHHH
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDL-LEEGHPLAMKDVASAIFSLCILLENKRRAV 335 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 335 (458)
-|.-|+.+|.+.+..+.+.+-..+..+-..+ ++. -.+..||.. ++.++. .++.+|..+ .+- -
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~--~~~----~l~~~l~~y~~~t~s~----~~~~il~~~---~~P----~ 67 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSD--REP----WLVNGLVDYYLSTNSQ----RALEILVGV---QEP----H 67 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhcc--chH----HHHHHHHHHHhhcCcH----HHHHHHHhc---CCc----c
Confidence 4556888888888888777777665543322 111 125555653 344442 344444432 211 1
Q ss_pred hhCcHHHHHHHhccCCcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchh
Q 012677 336 HAGAVRVILRKIMENSLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTR 412 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 412 (458)
+...+..|=+.+..+..+-.++.+|..+.. .+..-..|.+...+..|++.|....+..+-..|+.+|..|--.-+..
T Consensus 68 ~K~~~~~l~~~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~ 145 (668)
T PF04388_consen 68 DKHLFDKLNDYFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS 145 (668)
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch
Confidence 112444555566666788889999999988 68888899999999999999997667788888888888877665543
No 425
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=52.40 E-value=7.4 Score=42.01 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=39.4
Q ss_pred CCCccccccccccccCCc--------c--CCCcccc--------------------cHHHHHHHHhcC-------CCCCC
Q 012677 76 LPYEFRCPISGEIMTDPV--------V--LANGQTF--------------------DRPCIQRWLDEG-------NRTCP 118 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~--------~--l~cgh~f--------------------c~~ci~~~~~~~-------~~~CP 118 (458)
.+|--.|+-|...|.||- + +.||..| |..|..++.+.. ...||
T Consensus 65 ppD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~ 144 (711)
T TIGR00143 65 PADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACP 144 (711)
T ss_pred CCchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCC
Confidence 467889999999999874 2 3588777 999999986532 23899
Q ss_pred CCCccCCC
Q 012677 119 QTRQVLSH 126 (458)
Q Consensus 119 ~c~~~l~~ 126 (458)
.|+-.+..
T Consensus 145 ~Cgp~l~l 152 (711)
T TIGR00143 145 RCGPQLNF 152 (711)
T ss_pred CCCcEEEE
Confidence 99987743
No 426
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=52.32 E-value=9.6 Score=29.04 Aligned_cols=38 Identities=16% Similarity=0.444 Sum_probs=29.0
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.-.|-||..-...| ||.||..|-. + ...|..|+..+.+
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAY---k--kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAY---K--KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhhhc---c--cCcccccCCeecc
Confidence 44799998877765 8889999943 2 3479999998744
No 427
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.99 E-value=6.1 Score=39.26 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=26.3
Q ss_pred Ccccccccccccc-----CCccCCCcccccHHHHHHHHhc
Q 012677 78 YEFRCPISGEIMT-----DPVVLANGQTFDRPCIQRWLDE 112 (458)
Q Consensus 78 ~~~~C~ic~~~~~-----~p~~l~cgh~fc~~ci~~~~~~ 112 (458)
....||.|..... +-++-.|||-||..|...|...
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~ 344 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH 344 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC
Confidence 3667999986553 2344469999999999999874
No 428
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=51.75 E-value=11 Score=32.29 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
...+.||-|..-+. ...-+. ..+.||.|+.++...
T Consensus 107 ~~~Y~Cp~c~~r~t---------------f~eA~~-~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 107 NMFFICPNMCVRFT---------------FNEAME-LNFTCPRCGAMLDYL 141 (158)
T ss_pred CCeEECCCCCcEee---------------HHHHHH-cCCcCCCCCCEeeec
Confidence 45678998874332 111122 368999999998643
No 429
>PRK14707 hypothetical protein; Provisional
Probab=51.62 E-value=5.6e+02 Score=31.70 Aligned_cols=230 Identities=12% Similarity=0.078 Sum_probs=108.4
Q ss_pred hhhhHHhhc--CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHh-cccCch
Q 012677 170 LNSLLEKMS--SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILN-LSIHDE 246 (458)
Q Consensus 170 l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~-ls~~~~ 246 (458)
+...+.-|| .+......|...|.......+..+..+.. -.+...++-|+. +.+......|+..|.. |..+..
T Consensus 837 VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~--QevantLNALSK---WPd~~~C~~AA~aLA~rL~~d~~ 911 (2710)
T PRK14707 837 VATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTA--HGVVIVLNALSK---WPNVPVCAAAASALAERLADEPE 911 (2710)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccch--HHHHHHHhhhcc---CCCcHHHHHHHHHHHHHHhcCHH
Confidence 444444444 34555666777776444445666665543 223334444443 3456666666666654 444444
Q ss_pred hhhhhhcCCCCHHHHHHHHhc-C-CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc-C-ChHHHHHHHHHHH
Q 012677 247 NKRLVAENPLAIPLLIDSVRT-G-TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE-G-HPLAMKDVASAIF 322 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~-~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~-~~~~~~~a~~aL~ 322 (458)
-+..+-.. .+...+.-|+. + .+..+..+..+...|+...+-+..+-..+ |.-.+.-|+. + .+..+..|...-.
T Consensus 912 Lrqal~aQ--~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~-lsNtLNALSKWPd~~~c~~AA~aLA~ 988 (2710)
T PRK14707 912 LRKALSAH--RVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASN-LPQVLNALSKWPDVPAGGEVVDALAE 988 (2710)
T ss_pred HHhhccHH--HHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHH-HHHHHhhhccCCCchHHHHHHHHHHH
Confidence 44444443 45555555543 4 44555555444555655544444443333 2222333322 3 3444444444444
Q ss_pred HhcccccchhHHHhhCcHHHHHHHhc-cC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhh-cCChhHHhH
Q 012677 323 SLCILLENKRRAVHAGAVRVILRKIM-EN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRE-STCERNKEN 397 (458)
Q Consensus 323 ~L~~~~~~~~~i~~~g~v~~Lv~ll~-~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~ 397 (458)
.|..+..-+.. .+.-++...+.-|+ -+ ..+..+..+-..|+..+.-++.+-..| +...+.-|.. ++.+.++..
T Consensus 989 rL~~~~~LR~a-l~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~-lan~LNALSKWPde~~Cr~A 1066 (2710)
T PRK14707 989 RLVDEPALRNA-LDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLCKALSSQG-LTTVLNALCKWPEMPVCLAA 1066 (2710)
T ss_pred HHhccHHHHhh-cchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhhhhcchHH-HHHHHHhhccCCCchhHHHH
Confidence 55555555533 33333444444443 22 234444444455555666555554444 4444444443 332444444
Q ss_pred HHHHHHHHhccC
Q 012677 398 CAAILYNICFTD 409 (458)
Q Consensus 398 a~~~L~~L~~~~ 409 (458)
+..+-..|....
T Consensus 1067 a~aLA~rL~~d~ 1078 (2710)
T PRK14707 1067 ASALAERLSDDL 1078 (2710)
T ss_pred HHHHHHHhhccH
Confidence 444334444433
No 430
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.45 E-value=7.9 Score=29.10 Aligned_cols=13 Identities=38% Similarity=0.994 Sum_probs=11.7
Q ss_pred cccHHHHHHHHhc
Q 012677 100 TFDRPCIQRWLDE 112 (458)
Q Consensus 100 ~fc~~ci~~~~~~ 112 (458)
.|||.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999975
No 431
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=51.35 E-value=64 Score=26.58 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=56.9
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCch-hhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPL-FRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI 243 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~ 243 (458)
.+++.|-+.|. +++.++..|+..|-.+.++... +...+.. ...+..|+.++... ...+..++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s-~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD-KEFLLELVKIAKNS-PKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh-HHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHH
Confidence 57788888884 6788999999999988887654 6667776 67777788888753 12477899999999887663
No 432
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=51.34 E-value=59 Score=27.32 Aligned_cols=72 Identities=8% Similarity=0.071 Sum_probs=57.8
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhcccc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~ 328 (458)
++..|.+-|.++++.++..|..+|-.+..+-.. ...+.....+..|+.++.. .++.++...+..|...+..-
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 566677778888999999999999988876533 4556778889999999988 58899999999988876433
No 433
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=50.99 E-value=1.4e+02 Score=31.52 Aligned_cols=177 Identities=12% Similarity=0.033 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhc------cCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc-ccc
Q 012677 258 IPLLIDSVRTGTIETRRNAAAALFSLSA------LDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL-LEN 330 (458)
Q Consensus 258 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~------~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~-~~~ 330 (458)
.-.|+.+|+.-+.+.......-+.. .. .-|.-...+...++..+.+++.++..... .|+.++..+... ...
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~P 390 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTARYP 390 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcC
Confidence 3446777776665555444443333 11 00112223345578888888888643322 223333332211 111
Q ss_pred hhHHHhhCcHHHHHHHhccC------CcHHHHHHHHHHhcC----CHHHHHHHHhcCCHHHHHHHHhhc---CChhHHhH
Q 012677 331 KRRAVHAGAVRVILRKIMEN------SLVDELLAILAMLSS----HQDAIEEIGELGAIPCLLRIIRES---TCERNKEN 397 (458)
Q Consensus 331 ~~~i~~~g~v~~Lv~ll~~~------~~~~~a~~~L~~La~----~~~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~ 397 (458)
....+..+..++.++ .+...|+-++..|.. +.+.....+-...++.|.+.|... .+..-+..
T Consensus 391 -----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 465 (574)
T smart00638 391 -----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQL 465 (574)
T ss_pred -----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheee
Confidence 112556677777754 244555666665543 221111112223466666666532 23445667
Q ss_pred HHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh---hCCHHHHHHHHHHHHHHHhhHh
Q 012677 398 CAAILYNICFTDRTRTREIMEEENANGTLSRLAE---NGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 398 a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~---~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
.+++|.|+..... +..+...+. ..+..++..|.++|+.+....+
T Consensus 466 ~LkaLGN~g~~~~------------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p 512 (574)
T smart00638 466 YLKALGNAGHPSS------------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP 512 (574)
T ss_pred HHHhhhccCChhH------------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc
Confidence 7888888665332 222333222 2356799999999998875443
No 434
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=50.68 E-value=59 Score=26.12 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=31.1
Q ss_pred chHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHh
Q 012677 298 AMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVH 336 (458)
Q Consensus 298 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~ 336 (458)
+|+.||+-|.++++++...|..+|...+..+.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 578889988888889999999999998887755444444
No 435
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=50.51 E-value=2.2e+02 Score=26.68 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=80.1
Q ss_pred hhhhhHHhhcCCc-----HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc
Q 012677 169 HLNSLLEKMSSSL-----SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI 243 (458)
Q Consensus 169 ~l~~Lv~~l~~~~-----~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~ 243 (458)
.++.++..+..+. ......+..|..++.... ...+..++.....+...+..+-...++..|..--.
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~---------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~ 182 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG---------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF 182 (262)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC---------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC
Confidence 4566666664322 344566677777774321 23444455444443222234555566665543110
Q ss_pred CchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 244 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
++ + +. ..+..|+.+|.++...++.....+|..+-..-+.+.. ...+.|.+|+++|+++.- ..|+.+|-+
T Consensus 183 -P~----~-~~-~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~---~eAL~VLd~ 251 (262)
T PF14225_consen 183 -PD----H-EF-QILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLW---MEALEVLDE 251 (262)
T ss_pred -ch----h-HH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccH---HHHHHHHHH
Confidence 11 0 01 2556688999999999999999999998776655544 445689999999977643 334444443
No 436
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=49.86 E-value=53 Score=27.12 Aligned_cols=69 Identities=9% Similarity=0.048 Sum_probs=54.0
Q ss_pred CchHHHHHHhhcCChHHHHHHHHHHHHhccccc--chhHHHhhCcHHHHHHHhccC---C-cHHHHHHHHHHhcC
Q 012677 297 GAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE--NKRRAVHAGAVRVILRKIMEN---S-LVDELLAILAMLSS 365 (458)
Q Consensus 297 g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--~~~~i~~~g~v~~Lv~ll~~~---~-~~~~a~~~L~~La~ 365 (458)
.++..|-+-|.++++.++..|+.+|-.+..+-. ....+.+.+.+..|+.++.+. + ++.+++.++..-+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 367778888888999999999999999987643 556677788999999999865 3 67777777776543
No 437
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.81 E-value=51 Score=31.39 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=89.5
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.++...+..|+ ++.+....++..|+.|+.-+++....... ..|-.+++-++.. ...+-..|+.++..+...-.
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~--~vii~vvkslKNl----RS~VsraA~~t~~difs~ln 161 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH--EVIIAVVKSLKNL----RSAVSRAACMTLADIFSSLN 161 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHH
Confidence 57888888886 56788899999999999876655544444 4566677777654 44677777777776654433
Q ss_pred hhhhhhcCCCCHHHHHHHHhcC---CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 247 NKRLVAENPLAIPLLIDSVRTG---TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
+...-. .-..+..+|..+ +.=+++.|-.+|..+..+-... -+++.|...+.+.++.++..++....+
T Consensus 162 ~~i~~~----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 162 NSIDQE----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred HHHHHH----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccc
Confidence 222211 223334444443 3447888888888776543221 245666677777788888777766555
Q ss_pred h
Q 012677 324 L 324 (458)
Q Consensus 324 L 324 (458)
.
T Consensus 232 ~ 232 (334)
T KOG2933|consen 232 C 232 (334)
T ss_pred c
Confidence 4
No 438
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=49.80 E-value=1.2e+02 Score=32.31 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=88.5
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.++-|...+. .+...|..++..+...+..-+ ..++. .-.+|.|-.+-..+ .+..++.+++.++..+. ..-.
T Consensus 390 IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk-~~ilP~l~~l~~~t---t~~~vkvn~L~c~~~l~-q~lD 461 (700)
T KOG2137|consen 390 ILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVK-QAILPRLKNLAFKT---TNLYVKVNVLPCLAGLI-QRLD 461 (700)
T ss_pred HHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHH-HHHHHHhhcchhcc---cchHHHHHHHHHHHHHH-HHHH
Confidence 3444555554 446677788888887776433 22333 45667776663332 47888999999888887 2223
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHH
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMK 315 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 315 (458)
+..+++ .+..+.+..+..++++......+..++.....+...+....++|.++.+...+.....+
T Consensus 462 ~~~v~d---~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 462 KAAVLD---ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred HHHhHH---HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHH
Confidence 444443 33446666777788888888888888887776654555567888888887666544433
No 439
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=49.37 E-value=69 Score=26.85 Aligned_cols=71 Identities=11% Similarity=0.177 Sum_probs=54.2
Q ss_pred cHHHHHHHhccC--CcHHHHHHHHHHhcCC--HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 339 AVRVILRKIMEN--SLVDELLAILAMLSSH--QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 339 ~v~~Lv~ll~~~--~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
++..|.+-|.++ .++-.|+.+|..+..+ ..-...+.+.+.+..|++++....+..++..++.++..-+...
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 445555555554 5677788888888884 5567888888899999999986556899999999998877544
No 440
>PF12773 DZR: Double zinc ribbon
Probab=48.71 E-value=15 Score=24.38 Aligned_cols=11 Identities=18% Similarity=0.477 Sum_probs=6.4
Q ss_pred CCCCCCCccCC
Q 012677 115 RTCPQTRQVLS 125 (458)
Q Consensus 115 ~~CP~c~~~l~ 125 (458)
..||.|+..+.
T Consensus 30 ~~C~~Cg~~~~ 40 (50)
T PF12773_consen 30 KICPNCGAENP 40 (50)
T ss_pred CCCcCCcCCCc
Confidence 35666666544
No 441
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=48.18 E-value=66 Score=31.24 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhccCcchhHhhccC--chHHHHHHhhcC---ChHHHHHHHHHHHHhcccccchhHHHh-------hC
Q 012677 271 ETRRNAAAALFSLSALDSNKLIIGKLG--AMTPLIDLLEEG---HPLAMKDVASAIFSLCILLENKRRAVH-------AG 338 (458)
Q Consensus 271 ~~~~~a~~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~---~~~~~~~a~~aL~~L~~~~~~~~~i~~-------~g 338 (458)
.+|-.|...|..+.........+...+ .+..|+++++.+ ...++..|+.+|..|+....-...+++ .|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 345556666666655555566666644 999999999765 567899999999999886654333332 35
Q ss_pred cHHHHHH
Q 012677 339 AVRVILR 345 (458)
Q Consensus 339 ~v~~Lv~ 345 (458)
+++.+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 6665554
No 442
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=48.15 E-value=6.3 Score=37.67 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=31.0
Q ss_pred CccccccccccccCCcc-C--CCcc--cccHHHHHHHHhcCCCCCCCCCcc
Q 012677 78 YEFRCPISGEIMTDPVV-L--ANGQ--TFDRPCIQRWLDEGNRTCPQTRQV 123 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~-l--~cgh--~fc~~ci~~~~~~~~~~CP~c~~~ 123 (458)
..-.||+|+....--++ . .=|+ -+|..|-.+|--. ...||.|+..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-RVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 45789999987543332 1 3454 4688999999764 4579999963
No 443
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=47.55 E-value=2.2e+02 Score=25.95 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhcc
Q 012677 270 IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME 349 (458)
Q Consensus 270 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~ 349 (458)
..-...++..+..|...++....+...+.++.++..|..-++ .+.... ... +++.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~------------~~g~~~-~~~------------lfs~ 132 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDP------------MSGITA-HDP------------LFSP 132 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhh------------hcCCcc-ccc------------ccCH
Confidence 344556677788888877777777778888888888766444 111000 000 1111
Q ss_pred C----CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHH
Q 012677 350 N----SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGT 425 (458)
Q Consensus 350 ~----~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~ 425 (458)
. .+...=...|..|+.++.|.+.+-+.|....+.++....+ . .....-+|.+|=...++..| ..
T Consensus 133 ~~l~~tl~~~Yf~~IG~lS~~~~Gl~lLe~~~if~~l~~i~~~~~-~--~~l~klil~~LDY~~~~~~R---------~i 200 (226)
T PF14666_consen 133 QRLSTTLSRGYFLFIGVLSSTPNGLKLLERWNIFTMLYHIFSLSS-R--DDLLKLILSSLDYSVDGHPR---------II 200 (226)
T ss_pred HHHHhhHHHHHHHHHHHHhCChhHHHHHHHCCHHHHHHHHHccCc-h--HHHHHHHHhhCCCCCccHHH---------HH
Confidence 1 2334456677889999999999999999999999988542 2 22333355555332222222 34
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 426 LSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 426 L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
|.+.+.+++..++..|...|+.+-+
T Consensus 201 LsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 201 LSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 5566778899999999998887643
No 444
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=47.23 E-value=13 Score=31.99 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=8.5
Q ss_pred ccccccccccccC
Q 012677 79 EFRCPISGEIMTD 91 (458)
Q Consensus 79 ~~~C~ic~~~~~~ 91 (458)
...||+|+-+..+
T Consensus 134 ~~vC~vCGy~~~g 146 (166)
T COG1592 134 VWVCPVCGYTHEG 146 (166)
T ss_pred EEEcCCCCCcccC
Confidence 5679988655543
No 445
>PRK04023 DNA polymerase II large subunit; Validated
Probab=46.34 E-value=24 Score=38.99 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=31.0
Q ss_pred CccccccccccccCCccCCCcc-----cccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQ-----TFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh-----~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
....||-|+.......--.||. .||..|- +.. +...||.|+..+...
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG--~~~-~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCG--IEV-EEDECEKCGREPTPY 676 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCcccc--CcC-CCCcCCCCCCCCCcc
Confidence 3568999998763322224884 5999992 222 235799999988754
No 446
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=46.08 E-value=31 Score=30.00 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=31.5
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc-cHHHHHHHHHHHHHh
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP-NHLVREMISQWCKEH 146 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~-n~~l~~~i~~~~~~~ 146 (458)
..|.||.|.-.+. |...+ . ..++||.|+..+...+-.+ ...+.+.+++.-...
T Consensus 112 ~~y~C~~~~~r~s----------fdeA~-----~-~~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~l 165 (176)
T COG1675 112 NYYVCPNCHVKYS----------FDEAM-----E-LGFTCPKCGEDLEEYDSSEEIEELESELDELEEEL 165 (176)
T ss_pred CceeCCCCCCccc----------HHHHH-----H-hCCCCCCCCchhhhccchHHHHHHHHHHHHHHHHH
Confidence 4567877665443 33333 2 2479999999987654333 344566666654443
No 447
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=46.05 E-value=6.7 Score=38.22 Aligned_cols=48 Identities=21% Similarity=0.471 Sum_probs=0.0
Q ss_pred cccccccccccc--------------C---C--ccCCCcccccHHHHHHHHhc----C----CCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMT--------------D---P--VVLANGQTFDRPCIQRWLDE----G----NRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~--------------~---p--~~l~cgh~fc~~ci~~~~~~----~----~~~CP~c~~~l~~ 126 (458)
.-.||+|...-. | | +..||||..-.....-|-+- + +..||+|..++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 678999986321 1 2 23489996545555545331 1 2479999998864
No 448
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=45.85 E-value=9.9 Score=35.78 Aligned_cols=25 Identities=20% Similarity=0.565 Sum_probs=17.2
Q ss_pred ccccccccccc-CCccC--CCcccccHH
Q 012677 80 FRCPISGEIMT-DPVVL--ANGQTFDRP 104 (458)
Q Consensus 80 ~~C~ic~~~~~-~p~~l--~cgh~fc~~ 104 (458)
|.||+|...|. ++-.+ ++||+|+..
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 78999998884 22223 568888644
No 449
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=45.22 E-value=23 Score=29.90 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=16.4
Q ss_pred CCcccccH-----HHHHHHHhcCCCCCCCCCcc
Q 012677 96 ANGQTFDR-----PCIQRWLDEGNRTCPQTRQV 123 (458)
Q Consensus 96 ~cgh~fc~-----~ci~~~~~~~~~~CP~c~~~ 123 (458)
.+||.|.. .-+.+....+.-+||+|+..
T Consensus 9 ~~gH~FEgWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEFEGWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCccceecCCHHHHHHHHHcCCccCCCCCCC
Confidence 47888852 11222222355699999866
No 450
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=45.06 E-value=21 Score=38.08 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=47.3
Q ss_pred CcCCCCCCccccccccccccCCcc-CCCcccccHHHHHHHHh----cCCCCCCCCCccCCCCCCcccHHHHHHHHH
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVV-LANGQTFDRPCIQRWLD----EGNRTCPQTRQVLSHTVLIPNHLVREMISQ 141 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~-l~cgh~fc~~ci~~~~~----~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~ 141 (458)
.....+.-.+.|||+.--|.-|.. ..|.|.-|..-. .++. ...-.||+|.+......+..+..+..++..
T Consensus 298 i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~-~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~ 372 (636)
T KOG2169|consen 298 IATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDAL-SYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQS 372 (636)
T ss_pred ceeccceeEecCCcccceeecCCcccccccceecchh-hhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhh
Confidence 334455667899999988887765 478886554322 1111 123489999999998888888777666654
No 451
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=44.74 E-value=1.4e+02 Score=28.28 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=48.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchh--HhhccCchHHHHH----Hhh--------cCChHHHHHHHHHHH
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKL--IIGKLGAMTPLID----LLE--------EGHPLAMKDVASAIF 322 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~----lL~--------~~~~~~~~~a~~aL~ 322 (458)
++|.++.+++..+.+.+..++.+|..+...-.... .+.+.|..+.+-+ +|. ..+..+...|..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 78999999999999999999999999976543332 3555664444333 333 335566777777877
Q ss_pred Hhcc
Q 012677 323 SLCI 326 (458)
Q Consensus 323 ~L~~ 326 (458)
.|..
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7744
No 452
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=44.21 E-value=3.4e+02 Score=27.16 Aligned_cols=133 Identities=14% Similarity=0.052 Sum_probs=84.4
Q ss_pred HHHHHHhhcCC-hHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhc---cC---------CcHHHHHHHHHHhcC-
Q 012677 300 TPLIDLLEEGH-PLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIM---EN---------SLVDELLAILAMLSS- 365 (458)
Q Consensus 300 ~~Lv~lL~~~~-~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~---~~---------~~~~~a~~~L~~La~- 365 (458)
..++.+|.++- +..+..++.++.-|+.+...-..+...-.+..|+.+-. .. ++...++..|+|+..
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 35667777764 45566777788888777665444444434444444432 11 456779999999988
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhc----CChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRES----TCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN 432 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~ 432 (458)
++..|..+.+......+.+.+... ....++-.=++.|.-|..-....-.+++.+.++++.+-+++.+
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 677888888887777777666421 1134444556666666554443334666778888888888753
No 453
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=44.05 E-value=32 Score=31.78 Aligned_cols=37 Identities=30% Similarity=0.585 Sum_probs=25.7
Q ss_pred cccccccccccCCcc----C--C--CcccccHHHHHHHHhcCCCCCCC
Q 012677 80 FRCPISGEIMTDPVV----L--A--NGQTFDRPCIQRWLDEGNRTCPQ 119 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~----l--~--cgh~fc~~ci~~~~~~~~~~CP~ 119 (458)
-.|+||+++-...|- + . -|| +.|+++|---.+..||.
T Consensus 31 sfChiCfEl~iegvpks~llHtkSlRGH---rdCFEK~HlIanQ~~pr 75 (285)
T PF06937_consen 31 SFCHICFELSIEGVPKSNLLHTKSLRGH---RDCFEKYHLIANQDCPR 75 (285)
T ss_pred eecceeeccccccCccccccccccccch---HHHHHHHHHHHcCCCCc
Confidence 469999988765432 1 1 355 89999997555667994
No 454
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=43.40 E-value=92 Score=30.84 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhh-hhcCCCCHH
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRL-VAENPLAIP 259 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~-i~~~~~~i~ 259 (458)
...|..|...|+.+++..+..-..+.. +.|..++.-..+. ...+...++.|+..+..++........ +......++
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~--~~i~~~l~~y~~~-~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILM--QYIQQLLQQYASN-PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhC-CcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 345667888888888753322222221 2233332211111 123667888899988888765432111 111011111
Q ss_pred HHHHH--------Hh---cCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 260 LLIDS--------VR---TGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 260 ~Lv~l--------L~---~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
+..+ |. +..+-++..|+..+..+... -.+..+ .++++.++..|.+++.-+...|+.++
T Consensus 302 -v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~-l~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 -VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ-LPKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG-S-HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred -HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh-CCHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2222 22 22455677777777766443 223333 45799999999999988988888775
No 455
>PF04641 Rtf2: Rtf2 RING-finger
Probab=43.22 E-value=20 Score=33.56 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=32.4
Q ss_pred CCCccccccccccccCCccC-CCcccccHHHHHHHHhc
Q 012677 76 LPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDE 112 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~ 112 (458)
...+..|+|.++.+.+||+. .-|+.|-...|.+|+..
T Consensus 31 ~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 31 EARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred hCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence 45678899999999999975 58999999999999864
No 456
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=42.65 E-value=12 Score=24.80 Aligned_cols=18 Identities=28% Similarity=0.746 Sum_probs=10.2
Q ss_pred CCcCCCCCCccccccccc
Q 012677 70 DDHLLGLPYEFRCPISGE 87 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~ 87 (458)
.....++++++.||+|..
T Consensus 25 Gt~F~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 25 GTPFEDLPDDWVCPVCGA 42 (47)
T ss_dssp T--GGGS-TT-B-TTTSS
T ss_pred CCCHHHCCCCCcCcCCCC
Confidence 445567899999999974
No 457
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.30 E-value=19 Score=28.20 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=18.6
Q ss_pred Cccccccccccc----cCCccCC-CcccccHHHH
Q 012677 78 YEFRCPISGEIM----TDPVVLA-NGQTFDRPCI 106 (458)
Q Consensus 78 ~~~~C~ic~~~~----~~p~~l~-cgh~fc~~ci 106 (458)
..-+||-|+.-| ++|++.| ||.+|-++.+
T Consensus 8 tKridPetg~KFYDLNrdPiVsPytG~s~P~s~f 41 (129)
T COG4530 8 TKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYF 41 (129)
T ss_pred ccccCccccchhhccCCCccccCcccccchHHHH
Confidence 344688887655 5677766 7777755544
No 458
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=42.27 E-value=15 Score=28.92 Aligned_cols=20 Identities=35% Similarity=0.840 Sum_probs=15.5
Q ss_pred CCccC---CCcccccHHHHHHHHh
Q 012677 91 DPVVL---ANGQTFDRPCIQRWLD 111 (458)
Q Consensus 91 ~p~~l---~cgh~fc~~ci~~~~~ 111 (458)
.||.+ .|+ +.||.||.+|-.
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~ 86 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHG 86 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhC
Confidence 47765 355 589999999986
No 459
>PRK11595 DNA utilization protein GntX; Provisional
Probab=42.27 E-value=19 Score=32.85 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=26.4
Q ss_pred ccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 81 RCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.|.+|...+..+ .+..|..|...+-.- ...||.|+.+..
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~-~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTL-KTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcc-cCcCccCCCcCC
Confidence 599999876422 234788898775332 347999998754
No 460
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=42.19 E-value=1.2e+02 Score=21.14 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=31.3
Q ss_pred HHHhcCCHHHHHHHHhcCCHHHHHHHHhh-cCChhHHhHHHHHHHHHhc
Q 012677 360 LAMLSSHQDAIEEIGELGAIPCLLRIIRE-STCERNKENCAAILYNICF 407 (458)
Q Consensus 360 L~~La~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~a~~~L~~L~~ 407 (458)
|..||....+|+.+.+.|+ ..+++-+.. ..++.+++.+-.+..-|-.
T Consensus 2 LllL~~T~~GR~~lR~~~v-Y~IlRe~h~~E~d~~V~e~~erlV~iLir 49 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGV-YPILRELHKWEEDEEVQEACERLVQILIR 49 (58)
T ss_pred HhHHhccHHHHHHHHHcCc-hHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 6678999999999998884 445554442 3346776666665555444
No 461
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=42.11 E-value=19 Score=29.28 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=7.6
Q ss_pred Ccccccccccccc
Q 012677 78 YEFRCPISGEIMT 90 (458)
Q Consensus 78 ~~~~C~ic~~~~~ 90 (458)
....||-|+.-|.
T Consensus 8 tKr~Cp~cg~kFY 20 (129)
T TIGR02300 8 TKRICPNTGSKFY 20 (129)
T ss_pred ccccCCCcCcccc
Confidence 3446777766553
No 462
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=41.90 E-value=16 Score=22.26 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=21.7
Q ss_pred ccccccccccCC--ccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 81 RCPISGEIMTDP--VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 81 ~C~ic~~~~~~p--~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.|+.|.+.+.+. ++..=|..|+..| +.|..|+.++.
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C---------f~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC---------FKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC---------CCCcccCCcCc
Confidence 377787776653 3233455666554 46778877663
No 463
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=41.52 E-value=1.1e+02 Score=29.72 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcC--CHHHHHHHHhhc--CChhHHhHHHHHHHHHhccCchhHHHHHHh
Q 012677 352 LVDELLAILAMLSSHQDAIEEIGELG--AIPCLLRIIRES--TCERNKENCAAILYNICFTDRTRTREIMEE 419 (458)
Q Consensus 352 ~~~~a~~~L~~La~~~~~~~~i~~~g--~i~~Lv~ll~~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 419 (458)
++-.|+.+|..+...+.....+...+ .+..|+++++.+ -...++..|+.+|..|+.... ....++..
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~-~~~~V~~a 308 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRP-RCSDVLRA 308 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccc-cHHHHHHH
Confidence 35557777777777888888888877 899999999843 257899999999999998654 34455543
No 464
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=41.35 E-value=12 Score=22.75 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=6.7
Q ss_pred CCCCCCCcc
Q 012677 115 RTCPQTRQV 123 (458)
Q Consensus 115 ~~CP~c~~~ 123 (458)
..||+|+.+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 478888765
No 466
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=41.21 E-value=3.1e+02 Score=29.94 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=85.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHH-Hhc
Q 012677 301 PLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEI-GEL 376 (458)
Q Consensus 301 ~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i-~~~ 376 (458)
.+...+..+++......+.++.+++........- ...-+++-..-.... .+......+|..++. .++.-..+ .+.
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~ 523 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDP 523 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCc
Confidence 3444445566777777777777777654321111 111111111111111 356668888899988 67766666 457
Q ss_pred CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc--hhHHHHHHh------hhhhHHHHHHhh----hCCHHHHHHHHHH
Q 012677 377 GAIPCLLRIIRESTCERNKENCAAILYNICFTDR--TRTREIMEE------ENANGTLSRLAE----NGTSRAKRKANGI 444 (458)
Q Consensus 377 g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~------~g~~~~L~~ll~----~~~~~~~~~A~~~ 444 (458)
++...++.++-++. +++.+.|..+|........ +..++++.. .|....|..+.. ...+++-+....+
T Consensus 524 ~~~~~i~s~lfsp~-~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr~~~DI 602 (727)
T PF12726_consen 524 DAAQAIWSLLFSPD-DDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVRCLMDI 602 (727)
T ss_pred chhhHHHhheeCCC-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH
Confidence 88999999998654 9999999999999886443 222233321 122333333332 2345666666666
Q ss_pred HHHHHh
Q 012677 445 LERLNK 450 (458)
Q Consensus 445 L~~l~~ 450 (458)
|.-||.
T Consensus 603 i~~Lcd 608 (727)
T PF12726_consen 603 IEVLCD 608 (727)
T ss_pred HHHHcC
Confidence 666663
No 467
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=41.01 E-value=21 Score=40.15 Aligned_cols=45 Identities=27% Similarity=0.583 Sum_probs=31.0
Q ss_pred CcCCCCCCcccccccc--ccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 71 DHLLGLPYEFRCPISG--EIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~--~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
....++++.+.||-|+ +.+.|+. ...| |+. ....||.|+.++..+
T Consensus 906 TEVNPL~PHY~Cp~Cky~Ef~~d~s-vgsG--fDL---------pdK~CPkCg~pl~kD 952 (1444)
T COG2176 906 TEVNPLPPHYLCPECKYSEFIDDGS-VGSG--FDL---------PDKDCPKCGTPLKKD 952 (1444)
T ss_pred cccCCCCccccCCCCceeeeecCCC-cCCC--CCC---------CCCCCCcCCCccccC
Confidence 4567789999999997 5566653 2233 331 356899999998754
No 468
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=40.72 E-value=1.1e+02 Score=25.49 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=53.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--chhHhhccCchHHHHHHhhc------CChHHHHHHHHHHHHhcc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKLIIGKLGAMTPLIDLLEE------GHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~aL~~L~~ 326 (458)
++..|.+-|.++++.++..|..+|-.+..+-- -...|...+.+..|++++.. .+..++...+..+..-+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 55667788888999999999998888877542 35567778888899999963 367888888888876653
No 469
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=40.54 E-value=12 Score=38.82 Aligned_cols=40 Identities=20% Similarity=0.476 Sum_probs=25.3
Q ss_pred Cccccccccc-cccCCc-----c--CCCcccccHHHHHHHHhcCCCCCCCCC
Q 012677 78 YEFRCPISGE-IMTDPV-----V--LANGQTFDRPCIQRWLDEGNRTCPQTR 121 (458)
Q Consensus 78 ~~~~C~ic~~-~~~~p~-----~--l~cgh~fc~~ci~~~~~~~~~~CP~c~ 121 (458)
..|.|.+|.. -..-|. . ..||+.||..|+.+ ....||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCchH
Confidence 4678999942 111122 2 25999999999653 444599994
No 470
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=40.32 E-value=3.2e+02 Score=25.62 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=26.2
Q ss_pred hhHhhccCchH-HHHHHhhc--CChHHHHHHHHHHHHhcc
Q 012677 290 KLIIGKLGAMT-PLIDLLEE--GHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 290 ~~~i~~~g~i~-~Lv~lL~~--~~~~~~~~a~~aL~~L~~ 326 (458)
+..+++.+.++ -|+.+|.+ +++++...++..|.+|..
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCC
Confidence 44566667666 57777755 367788888888888865
No 471
>PF15616 TerY-C: TerY-C metal binding domain
Probab=39.84 E-value=11 Score=30.97 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=30.9
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
+...-.||-|....--.+ -.||+.||..= .+..+||-|++.....
T Consensus 74 L~g~PgCP~CGn~~~fa~-C~CGkl~Ci~g------~~~~~CPwCg~~g~~~ 118 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAFAV-CGCGKLFCIDG------EGEVTCPWCGNEGSFG 118 (131)
T ss_pred hcCCCCCCCCcChhcEEE-ecCCCEEEeCC------CCCEECCCCCCeeeec
Confidence 344457999998765332 27999998431 3456999999886543
No 472
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=39.60 E-value=42 Score=26.64 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhc
Q 012677 354 DELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRES 389 (458)
Q Consensus 354 ~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~ 389 (458)
...+..|..|+..|+.=..+++.|+++.|+.+|.+.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~He 99 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHE 99 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCC
Confidence 456777788888888888888999999999999854
No 473
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=39.50 E-value=11 Score=34.90 Aligned_cols=51 Identities=20% Similarity=0.458 Sum_probs=31.3
Q ss_pred CCcccccccccccc-CCc--------cCCCcccccHHHH-HHHHhcC---------CCCCCCCCccCCCC
Q 012677 77 PYEFRCPISGEIMT-DPV--------VLANGQTFDRPCI-QRWLDEG---------NRTCPQTRQVLSHT 127 (458)
Q Consensus 77 ~~~~~C~ic~~~~~-~p~--------~l~cgh~fc~~ci-~~~~~~~---------~~~CP~c~~~l~~~ 127 (458)
+..+.|++|...+. -|. .++|-..+|..-+ ..||-+| .+.||.|++.|.+.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence 56789999987654 332 1344434444433 2465543 45899999988763
No 474
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=39.47 E-value=32 Score=39.01 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=35.7
Q ss_pred ccccccccccccCCccCCCccc-----ccHHHHHHHHhc--CCCCCCCCCccCCCCC---CcccHHHHHHHHHH
Q 012677 79 EFRCPISGEIMTDPVVLANGQT-----FDRPCIQRWLDE--GNRTCPQTRQVLSHTV---LIPNHLVREMISQW 142 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~-----fc~~ci~~~~~~--~~~~CP~c~~~l~~~~---~~~n~~l~~~i~~~ 142 (458)
.+.||-|+.......--.||+. +|..|=.+.-.. +...||.|+.++.... +.....+++..++.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~~~~~~A~~~~ 740 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVKEEYRSALENV 740 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHHHHHHHHHHHh
Confidence 3789999986544322248854 377774332111 1237999998876542 22334445544443
No 475
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.92 E-value=22 Score=34.43 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=33.6
Q ss_pred cccccccccccCCc-cCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHH--HHHHHHHHHHhCCCCCCCCCC
Q 012677 80 FRCPISGEIMTDPV-VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV--REMISQWCKEHGIELPKPIKD 156 (458)
Q Consensus 80 ~~C~ic~~~~~~p~-~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l--~~~i~~~~~~~~~~~p~~~~~ 156 (458)
..||+|.+-|.+-. -+|=.|.- ..+.+-. .+=+.|... ..+.+.||-.+ .+.+.+|...+|+.+|.+...
T Consensus 305 ~~CpvC~~~f~~ia~~LPfah~~----~S~Lvc~--isge~md~~-N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~ 377 (389)
T KOG0396|consen 305 NNCPVCCEAFKPIAQALPFAHHA----QSRLVCS--ISGELMDDD-NPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKV 377 (389)
T ss_pred CCCCCcccccchhhhcCCchhhh----hhHHHhh--ccccccCCC-CCcccccCceeehhHHHHhhcccCCCcCCCCCcc
Confidence 37889988776533 34544421 1111110 011122211 12234455322 555666766666777766654
Q ss_pred CC
Q 012677 157 TD 158 (458)
Q Consensus 157 ~~ 158 (458)
..
T Consensus 378 f~ 379 (389)
T KOG0396|consen 378 FR 379 (389)
T ss_pred cc
Confidence 43
No 476
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=38.65 E-value=5.5e+02 Score=27.95 Aligned_cols=134 Identities=14% Similarity=0.067 Sum_probs=82.4
Q ss_pred cCChHHHhhccCCCC-CC---CChhHHHHHHHHHHhccc----CchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHH
Q 012677 209 TDAIPLLLSPLSPGR-AD---TDPGLLEDLITTILNLSI----HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAAL 280 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~-~~---~~~~~~~~a~~~L~~ls~----~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L 280 (458)
.|.++.+++.|.... .+ .++.-.+.|+..+.++.. .++ ...+++.- +++.++..++++.-=++..||..+
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp-~an~me~f-iv~hv~P~f~s~ygfL~Srace~i 484 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSP-AANVMEYF-IVNHVIPAFRSNYGFLKSRACEFI 484 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCch-HHHHHHHH-HHHHhhHhhcCcccchHHHHHHHH
Confidence 488899999884321 11 233445566666665543 222 22333332 556666677777777888999998
Q ss_pred HHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhh--CcHHHHHHH
Q 012677 281 FSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHA--GAVRVILRK 346 (458)
Q Consensus 281 ~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~--g~v~~Lv~l 346 (458)
..++. +-+..-.-..+.+....++.+.+..++..|+.||.-+-.+.....++-++ +.++.|+.+
T Consensus 485 s~~ee--Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsL 550 (970)
T COG5656 485 STIEE--DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSL 550 (970)
T ss_pred HHHHH--hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHh
Confidence 88843 22332222345666777888888899999999999988877655544332 344444433
No 477
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.53 E-value=99 Score=33.98 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=59.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc-----CchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHH
Q 012677 370 IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFT-----DRTRTREIMEEENANGTLSRLAENGTSRAKRKANGI 444 (458)
Q Consensus 370 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~-----~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~ 444 (458)
-+.+.+...++.+++++..+.++.++.+|-..|+.|++. .++...+-+.....+..|+..+..+......-...+
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i 262 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGI 262 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHH
Confidence 344455668999999999777789999999999999988 555444555556777777777665544444444445
Q ss_pred HHHHHhhHhhhh
Q 012677 445 LERLNKAALIVH 456 (458)
Q Consensus 445 L~~l~~~~~~~~ 456 (458)
.-.|+...+.++
T Consensus 263 ~vlI~ll~~~r~ 274 (838)
T KOG2073|consen 263 IVLISLLNPRRD 274 (838)
T ss_pred HHHHHhcCcccc
Confidence 555555444433
No 478
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=38.48 E-value=2.3 Score=33.32 Aligned_cols=46 Identities=30% Similarity=0.589 Sum_probs=15.0
Q ss_pred cccccccccc--cCCccC--CCcccccHHHHHHHHh---cCCCCCCCCCccCCC
Q 012677 80 FRCPISGEIM--TDPVVL--ANGQTFDRPCIQRWLD---EGNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~--~~p~~l--~cgh~fc~~ci~~~~~---~~~~~CP~c~~~l~~ 126 (458)
-.|++|...+ .|+... +-||.|-| |-...+. .+...||+|+...-.
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w~R-C~lT~l~i~~~~~r~C~~C~~~~l~ 67 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVWPR-CALTFLPIQTPGVRVCPVCGRRALD 67 (99)
T ss_dssp --------------SSEEE-TTS-EEEB--SSS-SBS-SS-EEE-TTT--EEE-
T ss_pred ccccccccccccCCcCEeECCCCCEEee-eeeeeeeeccCCeeEcCCCCCEEec
Confidence 4699999855 566554 45898843 4333332 233589999977543
No 479
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=38.47 E-value=2.2e+02 Score=30.54 Aligned_cols=106 Identities=9% Similarity=0.080 Sum_probs=72.9
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhh--CcHHHHHHHhc----cC--CcHHHHHHHHHHhcC----C
Q 012677 299 MTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHA--GAVRVILRKIM----EN--SLVDELLAILAMLSS----H 366 (458)
Q Consensus 299 i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~--g~v~~Lv~ll~----~~--~~~~~a~~~L~~La~----~ 366 (458)
...++.+|++.+.-.|..-+.+..|+..+..-..++++. .-+..|+.+|. +. -.+.+|+.++..++. .
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 456778998888888888888888887766544455552 34444555554 33 357788888877765 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc
Q 012677 367 QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 367 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
+..|.++ +...++-+++ .+.-++.+|++.+..|-...|
T Consensus 381 ~~~r~ev-----~~lv~r~lqD-rss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 VGRRHEV-----IRLVGRRLQD-RSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cchHHHH-----HHHHHHHhhh-hhHHHHHHHHHHHHHHHhcCC
Confidence 4556665 3445677775 458899999999988876655
No 480
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=38.05 E-value=3.3e+02 Score=26.62 Aligned_cols=107 Identities=11% Similarity=0.115 Sum_probs=61.3
Q ss_pred CHHHHHHHHhcC-------CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc----------CChHHHHHHHH
Q 012677 257 AIPLLIDSVRTG-------TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE----------GHPLAMKDVAS 319 (458)
Q Consensus 257 ~i~~Lv~lL~~~-------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~~ 319 (458)
.+|-++.++..+ +..........+..|..+..-.-..--...+|.++.++-. .+..+|..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 556666665432 4555666666677776665332222223467888876622 23478999999
Q ss_pred HHHHhcccccchhHHHhhCcHHHHHHHhccC--C--cHHHHHHHHHHh
Q 012677 320 AIFSLCILLENKRRAVHAGAVRVILRKIMEN--S--LVDELLAILAML 363 (458)
Q Consensus 320 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~--~~~~a~~~L~~L 363 (458)
.|..++..-...-.-+..-++..|.+.+.++ . ...-|+..|..|
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9999986544333334444555677777665 1 233355444443
No 481
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=37.57 E-value=6 Score=25.40 Aligned_cols=9 Identities=22% Similarity=0.619 Sum_probs=7.3
Q ss_pred CCCCCCCCc
Q 012677 114 NRTCPQTRQ 122 (458)
Q Consensus 114 ~~~CP~c~~ 122 (458)
...||.|+.
T Consensus 26 ~~~CP~Cg~ 34 (42)
T PF09723_consen 26 PVPCPECGS 34 (42)
T ss_pred CCcCCCCCC
Confidence 457999987
No 482
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.48 E-value=11 Score=25.65 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=6.4
Q ss_pred CCCCCCccCCCC
Q 012677 116 TCPQTRQVLSHT 127 (458)
Q Consensus 116 ~CP~c~~~l~~~ 127 (458)
.||+|+.+|+..
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899999988643
No 483
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=36.98 E-value=34 Score=19.34 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhc
Q 012677 313 AMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIM 348 (458)
Q Consensus 313 ~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~ 348 (458)
+|..|+.+|.++-. .-+++.|++.|.
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 35566666666533 345666666554
No 484
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.95 E-value=9 Score=37.12 Aligned_cols=48 Identities=19% Similarity=0.382 Sum_probs=38.1
Q ss_pred ccccccccccCC----ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 81 RCPISGEIMTDP----VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 81 ~C~ic~~~~~~p----~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
.|.||..-++.- -.+-|||.|+..|+.+|+.. ...||.|+..++...+
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~~~~ 249 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPKNGF 249 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhhhhH
Confidence 588998776543 34679999999999999986 5579999988876543
No 485
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=36.31 E-value=7.2 Score=22.06 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=4.4
Q ss_pred CCCCCCCcc
Q 012677 115 RTCPQTRQV 123 (458)
Q Consensus 115 ~~CP~c~~~ 123 (458)
..||.|+.+
T Consensus 17 ~fC~~CG~~ 25 (26)
T PF13248_consen 17 KFCPNCGAK 25 (26)
T ss_pred ccChhhCCC
Confidence 345555543
No 486
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=35.52 E-value=18 Score=24.70 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=18.4
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.|.||.|...+.=|-... |- .-.||.|+..+-
T Consensus 2 ~~~CP~CG~~iev~~~~~-Ge--------------iV~Cp~CGaele 33 (54)
T TIGR01206 2 QFECPDCGAEIELENPEL-GE--------------LVICDECGAELE 33 (54)
T ss_pred ccCCCCCCCEEecCCCcc-CC--------------EEeCCCCCCEEE
Confidence 367999987664322111 32 225888887653
No 487
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.30 E-value=38 Score=27.26 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=15.2
Q ss_pred cccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 100 TFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 100 ~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.||..|=..-+. .||.|..++.-+
T Consensus 29 afcskcgeati~----qcp~csasirgd 52 (160)
T COG4306 29 AFCSKCGEATIT----QCPICSASIRGD 52 (160)
T ss_pred HHHhhhchHHHh----cCCccCCccccc
Confidence 367777554443 488888877644
No 488
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=35.26 E-value=33 Score=21.08 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=12.1
Q ss_pred cHHHHHHHHhc-------CCCCCCCCCccCC
Q 012677 102 DRPCIQRWLDE-------GNRTCPQTRQVLS 125 (458)
Q Consensus 102 c~~ci~~~~~~-------~~~~CP~c~~~l~ 125 (458)
|..|..++... ....|+.|+-.++
T Consensus 2 C~~C~~Ey~~p~~RR~~~~~isC~~CGPr~~ 32 (35)
T PF07503_consen 2 CDDCLKEYFDPSNRRFHYQFISCTNCGPRYS 32 (35)
T ss_dssp -HHHHHHHCSTTSTTTT-TT--BTTCC-SCC
T ss_pred CHHHHHHHcCCCCCcccCcCccCCCCCCCEE
Confidence 55666665542 1237999986654
No 489
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=35.24 E-value=59 Score=30.98 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=43.0
Q ss_pred ccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc---------------cchhHHHhhCcHHHHHHHhc
Q 012677 295 KLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL---------------ENKRRAVHAGAVRVILRKIM 348 (458)
Q Consensus 295 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~---------------~~~~~i~~~g~v~~Lv~ll~ 348 (458)
+...|..++.-|..++...+..|+.+|.+++... .|...+.+.|++++|+.+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3556778888888888888999999999887543 24555788899999999986
No 490
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=35.10 E-value=82 Score=26.39 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=49.5
Q ss_pred cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcC-----CHHHH
Q 012677 296 LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSS-----HQDAI 370 (458)
Q Consensus 296 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~-----~~~~~ 370 (458)
...-..+..+|.++++++|..|+.+|..--. + .+. -.-+.|-.++.+..+++.-.... +.. .++.|
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~--~---~l~--pY~d~L~~Lldd~~frdeL~~f~--~~~~~~~I~~ehR 86 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD--P---YLT--PYKDNLENLLDDKTFRDELTTFN--LSDESSVIEEEHR 86 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---HHH--hHHHHHHHHcCcchHHHHHHhhc--ccCCcCCCCHHHH
Confidence 5556677889999999999999999987311 1 111 12245666676666666644432 333 25555
Q ss_pred HHHHhcCCHHHHHHHHh
Q 012677 371 EEIGELGAIPCLLRIIR 387 (458)
Q Consensus 371 ~~i~~~g~i~~Lv~ll~ 387 (458)
..+ +|.++++|-
T Consensus 87 ~~l-----~pvvlRILy 98 (141)
T PF07539_consen 87 PEL-----MPVVLRILY 98 (141)
T ss_pred hHH-----HHHHHHHHH
Confidence 554 788887774
No 491
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=34.80 E-value=49 Score=33.67 Aligned_cols=66 Identities=23% Similarity=0.108 Sum_probs=50.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 261 LIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
+-.+....+++++..|..++.+++.+.+++..... ...-..++.++..+.+++-+.++.|+..+-.
T Consensus 333 lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 333 LKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 33444556899999999999999999888765544 5566677888877777787888888776654
No 492
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=34.44 E-value=23 Score=29.89 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHH-hcCCCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWL-DEGNRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~-~~~~~~CP~c~~~l~~ 126 (458)
...+.||-|...+.. .=..... ..+.+.||.|+..+..
T Consensus 97 ~~~Y~Cp~C~~~y~~------------~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNCQSKYTF------------LEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCCCCEeeH------------HHHHHhcCCCCcEECCCCCCEEEE
Confidence 456789977755541 1011111 1245899999998854
No 493
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=33.95 E-value=2.5e+02 Score=28.87 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=65.5
Q ss_pred hhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc-h----hhhhhhcCCCCHHHHHHHHhc-CCHHHHHH
Q 012677 202 RALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD-E----NKRLVAENPLAIPLLIDSVRT-GTIETRRN 275 (458)
Q Consensus 202 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~-~----~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~ 275 (458)
...|....+.+..+++.+..+ .+.+--++.+. .+. + ....+.+. +.++.|+.+|+. .+.+++.+
T Consensus 13 l~Fik~~~~~v~~llkHI~~~------~ImDlLLklIs---~d~~~~~~~ilewL~~q-~LI~~Li~~L~p~~~~~~q~n 82 (475)
T PF04499_consen 13 LEFIKSQPNFVDNLLKHIDTP------AIMDLLLKLIS---TDKPESPTGILEWLAEQ-NLIPRLIDLLSPSYSSDVQSN 82 (475)
T ss_pred HHHHHhCccHHHHHHHhcCCc------HHHHHHHHHHc---cCcccchHHHHHHHHHh-CHHHHHHHHhCCCCCHHHHHH
Confidence 333433367777777777532 44444444432 222 1 23344455 599999999974 37889999
Q ss_pred HHHHHHHhhccCc------------c--hhHhhccCchHHHHHHh-hcCChHHHHHHHHHHHHhc
Q 012677 276 AAAALFSLSALDS------------N--KLIIGKLGAMTPLIDLL-EEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 276 a~~~L~~Ls~~~~------------~--~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~ 325 (458)
|+.+|..+..... + ...+.....|..|+..+ .........+++.++..|-
T Consensus 83 aa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 83 AADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred HHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 9988877753221 1 23345566777777643 3233455566666666554
No 494
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=33.69 E-value=12 Score=19.96 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=6.4
Q ss_pred ccccccccccCC
Q 012677 81 RCPISGEIMTDP 92 (458)
Q Consensus 81 ~C~ic~~~~~~p 92 (458)
.|++|...|.++
T Consensus 2 ~C~~C~~~f~~~ 13 (23)
T PF00096_consen 2 KCPICGKSFSSK 13 (23)
T ss_dssp EETTTTEEESSH
T ss_pred CCCCCCCccCCH
Confidence 456665555543
No 495
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=33.48 E-value=2.4e+02 Score=22.25 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHh---h---hCCHHHHHHHHHHHHHH
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA---E---NGTSRAKRKANGILERL 448 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll---~---~~~~~~~~~A~~~L~~l 448 (458)
+..|.+-|.+. ++.++..|+.+|..|..+.+..+...+....++.-++++. . ..+..+++++..++...
T Consensus 39 ~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 55666666654 6999999999999999877765555554444444444321 1 12567899998888754
No 496
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=33.42 E-value=20 Score=38.15 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=0.0
Q ss_pred cccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 80 FRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
..||-|+....+ |+.||..|=... ....||.|+..++..
T Consensus 2 ~~Cp~Cg~~n~~------~akFC~~CG~~l---~~~~Cp~CG~~~~~~ 40 (645)
T PRK14559 2 LICPQCQFENPN------NNRFCQKCGTSL---THKPCPQCGTEVPVD 40 (645)
T ss_pred CcCCCCCCcCCC------CCccccccCCCC---CCCcCCCCCCCCCcc
No 497
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=33.27 E-value=35 Score=30.57 Aligned_cols=38 Identities=21% Similarity=0.583 Sum_probs=25.2
Q ss_pred ccccccccc-cccCCcc-----C--CCcccccHHHHHHHHhcCCCCCCCCCc
Q 012677 79 EFRCPISGE-IMTDPVV-----L--ANGQTFDRPCIQRWLDEGNRTCPQTRQ 122 (458)
Q Consensus 79 ~~~C~ic~~-~~~~p~~-----l--~cgh~fc~~ci~~~~~~~~~~CP~c~~ 122 (458)
.|.|.+|.. ..--|.. . .|+..||+.|..+ ..||.|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~------~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK------KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC------CCCCCcHh
Confidence 567999974 2222221 1 4899999999762 46999954
No 498
>PRK00420 hypothetical protein; Validated
Probab=33.23 E-value=15 Score=29.32 Aligned_cols=27 Identities=26% Similarity=0.657 Sum_probs=17.7
Q ss_pred ccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 81 RCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.||.|+..+... +.+...||.|+..+.
T Consensus 25 ~CP~Cg~pLf~l------------------k~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 25 HCPVCGLPLFEL------------------KDGEVVCPVHGKVYI 51 (112)
T ss_pred CCCCCCCcceec------------------CCCceECCCCCCeee
Confidence 499998655431 224557999988654
No 499
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=33.19 E-value=20 Score=20.29 Aligned_cols=8 Identities=25% Similarity=0.683 Sum_probs=4.1
Q ss_pred cccccccc
Q 012677 82 CPISGEIM 89 (458)
Q Consensus 82 C~ic~~~~ 89 (458)
||||...+
T Consensus 4 CPiC~~~v 11 (26)
T smart00734 4 CPVCFREV 11 (26)
T ss_pred CCCCcCcc
Confidence 55555444
No 500
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=33.07 E-value=13 Score=28.66 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=21.7
Q ss_pred CCCCccccccccccccCCccC--CCcccccHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVL--ANGQTFDRPC 105 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l--~cgh~fc~~c 105 (458)
.-.++|+|.-|+-+-..-..- .=|+.||+.|
T Consensus 66 ~q~DEFTCssCFLV~HRSqLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 66 KQADEFTCSSCFLVHHRSQLAREKDGQPICRDC 98 (99)
T ss_pred CCCCceeeeeeeeEechhhhccccCCCEecccc
Confidence 345799999999776543322 3478888877
Done!