Query 012677
Match_columns 458
No_of_seqs 390 out of 2970
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 14:05:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 7.2E-33 2.5E-37 269.7 20.4 269 182-454 47-338 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 2.7E-31 9.3E-36 269.2 21.8 279 169-454 3-364 (457)
3 3nmz_A APC variant protein; pr 100.0 1.5E-31 5.2E-36 267.9 18.9 265 185-453 166-453 (458)
4 3l6x_A Catenin delta-1; cateni 100.0 1.5E-30 5.1E-35 266.4 21.9 278 169-453 49-387 (584)
5 3now_A UNC-45 protein, SD10334 100.0 7.5E-29 2.6E-33 261.9 25.4 280 166-452 419-739 (810)
6 3nmz_A APC variant protein; pr 100.0 5.2E-29 1.8E-33 249.6 22.6 282 166-450 68-408 (458)
7 1xm9_A Plakophilin 1; armadill 100.0 1.7E-28 5.8E-33 248.7 22.3 284 166-457 42-456 (457)
8 3nmw_A APC variant protein; AR 100.0 1.3E-28 4.5E-33 239.6 17.4 242 166-413 71-340 (354)
9 3ul1_B Importin subunit alpha- 100.0 7.6E-28 2.6E-32 247.5 23.7 278 167-452 99-389 (510)
10 3now_A UNC-45 protein, SD10334 100.0 3.5E-28 1.2E-32 256.9 21.3 275 169-451 378-695 (810)
11 3tpo_A Importin subunit alpha- 100.0 2.9E-27 9.8E-32 244.3 25.5 279 166-452 117-408 (529)
12 3l6x_A Catenin delta-1; cateni 100.0 8E-28 2.8E-32 246.2 20.9 282 167-456 89-482 (584)
13 3tpo_A Importin subunit alpha- 100.0 5.7E-27 1.9E-31 242.1 26.7 287 166-454 160-453 (529)
14 3ul1_B Importin subunit alpha- 100.0 8.1E-27 2.8E-31 239.8 24.3 287 166-454 141-434 (510)
15 4hxt_A De novo protein OR329; 99.9 2.4E-26 8.3E-31 213.5 22.3 239 210-455 2-246 (252)
16 4b8j_A Importin subunit alpha- 99.9 2.1E-25 7.3E-30 230.3 27.8 278 167-451 116-401 (528)
17 4b8j_A Importin subunit alpha- 99.9 4.6E-25 1.6E-29 227.8 27.1 277 168-451 74-359 (528)
18 4hxt_A De novo protein OR329; 99.9 2E-25 6.8E-30 207.3 21.7 236 169-411 3-245 (252)
19 4db8_A Armadillo-repeat protei 99.9 8.5E-26 2.9E-30 210.3 18.9 236 209-451 11-252 (252)
20 4db8_A Armadillo-repeat protei 99.9 9.9E-26 3.4E-30 209.9 18.6 232 169-407 13-251 (252)
21 1wa5_B Importin alpha subunit; 99.9 2.5E-24 8.5E-29 222.5 26.8 277 167-451 129-413 (530)
22 1wa5_B Importin alpha subunit; 99.9 1.1E-23 3.8E-28 217.6 29.6 279 168-454 173-461 (530)
23 2jdq_A Importin alpha-1 subuni 99.9 1.6E-23 5.4E-28 211.4 29.8 279 168-454 107-394 (450)
24 2jdq_A Importin alpha-1 subuni 99.9 2.3E-23 7.8E-28 210.2 28.9 275 168-451 64-348 (450)
25 3tt9_A Plakophilin-2; cell adh 99.9 5.7E-25 1.9E-29 200.0 14.9 194 210-409 8-231 (233)
26 1jdh_A Beta-catenin; beta-cate 99.9 1.9E-24 6.7E-29 222.8 18.3 276 167-452 16-297 (529)
27 2z6h_A Catenin beta-1, beta-ca 99.9 5E-24 1.7E-28 225.4 21.4 275 168-452 14-294 (644)
28 1jdh_A Beta-catenin; beta-cate 99.9 4.6E-23 1.6E-27 212.5 25.2 278 168-453 101-388 (529)
29 2z6h_A Catenin beta-1, beta-ca 99.9 1.3E-22 4.5E-27 214.5 26.1 278 168-453 98-385 (644)
30 3tt9_A Plakophilin-2; cell adh 99.9 3.6E-24 1.2E-28 194.7 11.9 194 256-450 8-229 (233)
31 4db6_A Armadillo repeat protei 99.9 1E-22 3.4E-27 184.1 19.8 194 255-450 11-209 (210)
32 2z6g_A B-catenin; FULL-length, 99.9 1.2E-22 4.3E-27 218.5 22.3 271 168-452 115-391 (780)
33 4db6_A Armadillo repeat protei 99.9 2.5E-22 8.6E-27 181.5 18.1 193 209-407 11-209 (210)
34 2z6g_A B-catenin; FULL-length, 99.9 1.1E-21 3.7E-26 211.2 24.8 278 168-453 234-521 (780)
35 3opb_A SWI5-dependent HO expre 99.9 2.8E-22 9.7E-27 208.0 18.2 281 166-453 374-731 (778)
36 3opb_A SWI5-dependent HO expre 99.9 1.4E-21 4.9E-26 202.8 22.2 276 169-450 335-683 (778)
37 1xqr_A HSPBP1 protein; armadil 99.8 2.6E-20 8.8E-25 176.5 18.4 221 227-450 53-287 (296)
38 1xqr_A HSPBP1 protein; armadil 99.8 9.4E-20 3.2E-24 172.7 18.3 182 269-452 53-240 (296)
39 2kre_A Ubiquitin conjugation f 99.8 2.1E-20 7.1E-25 146.6 8.7 77 71-148 21-97 (100)
40 1wgm_A Ubiquitin conjugation f 99.8 3.7E-20 1.3E-24 144.6 9.9 79 70-149 13-92 (98)
41 2kr4_A Ubiquitin conjugation f 99.8 1.3E-20 4.4E-25 143.5 6.7 77 70-147 5-81 (85)
42 1t1h_A Gspef-atpub14, armadill 99.8 5.2E-20 1.8E-24 138.6 6.1 75 75-149 4-78 (78)
43 2f42_A STIP1 homology and U-bo 99.8 1.8E-19 6.3E-24 154.9 9.1 75 75-149 102-176 (179)
44 2yu4_A E3 SUMO-protein ligase 99.7 3.5E-18 1.2E-22 132.8 4.8 73 76-148 4-85 (94)
45 2c2l_A CHIP, carboxy terminus 99.7 8.4E-18 2.9E-22 159.0 7.9 76 74-149 203-278 (281)
46 3ztg_A E3 ubiquitin-protein li 99.7 4.3E-17 1.5E-21 126.7 8.4 77 73-149 7-86 (92)
47 3grl_A General vesicular trans 99.7 7.3E-16 2.5E-20 156.2 19.6 279 168-454 21-346 (651)
48 3fl2_A E3 ubiquitin-protein li 99.6 4.3E-16 1.5E-20 128.1 5.8 71 75-145 48-119 (124)
49 1z6u_A NP95-like ring finger p 99.6 1.8E-15 6E-20 128.0 5.8 69 76-144 75-144 (150)
50 3htk_C E3 SUMO-protein ligase 99.6 2.3E-15 8E-20 135.2 6.6 76 70-145 172-251 (267)
51 2y43_A E3 ubiquitin-protein li 99.5 4.1E-15 1.4E-19 117.1 5.4 71 75-146 18-89 (99)
52 2egp_A Tripartite motif-contai 99.5 3.1E-16 1E-20 118.2 -1.1 65 73-137 6-76 (79)
53 2ecy_A TNF receptor-associated 99.5 9.6E-15 3.3E-19 105.7 6.7 59 71-129 7-65 (66)
54 3lrq_A E3 ubiquitin-protein li 99.5 2.9E-15 9.8E-20 117.9 3.6 70 75-144 18-88 (100)
55 3hct_A TNF receptor-associated 99.5 5.3E-15 1.8E-19 120.3 4.8 72 71-142 10-81 (118)
56 3l11_A E3 ubiquitin-protein li 99.5 2.4E-15 8.2E-20 121.9 2.7 70 74-143 10-86 (115)
57 2djb_A Polycomb group ring fin 99.5 2.2E-14 7.6E-19 105.6 6.8 61 71-132 7-68 (72)
58 2ecw_A Tripartite motif-contai 99.5 3E-15 1E-19 114.4 2.1 67 71-137 11-82 (85)
59 3m62_A Ubiquitin conjugation f 99.5 7.9E-15 2.7E-19 154.0 5.1 125 23-148 823-960 (968)
60 2yur_A Retinoblastoma-binding 99.5 2.1E-14 7.3E-19 106.3 6.0 62 71-132 7-71 (74)
61 2ysl_A Tripartite motif-contai 99.5 3E-14 1E-18 105.3 6.8 60 70-129 11-72 (73)
62 2csy_A Zinc finger protein 183 99.5 3.5E-14 1.2E-18 107.2 7.3 62 74-137 10-71 (81)
63 2ckl_A Polycomb group ring fin 99.5 1E-14 3.5E-19 116.7 4.5 68 75-143 11-83 (108)
64 2ecv_A Tripartite motif-contai 99.5 3.9E-15 1.3E-19 113.7 2.0 67 71-137 11-82 (85)
65 3grl_A General vesicular trans 99.5 2.8E-12 9.6E-17 130.2 22.7 281 168-452 60-396 (651)
66 1jm7_B BARD1, BRCA1-associated 99.5 1.7E-14 5.9E-19 117.0 4.1 67 76-145 19-86 (117)
67 2ckl_B Ubiquitin ligase protei 99.5 2.2E-14 7.6E-19 124.0 4.6 71 74-144 49-121 (165)
68 2ysj_A Tripartite motif-contai 99.5 8.3E-14 2.8E-18 99.7 6.4 51 70-120 11-63 (63)
69 4ayc_A E3 ubiquitin-protein li 99.5 2.9E-14 1E-18 119.2 4.1 64 77-143 51-114 (138)
70 1jm7_A BRCA1, breast cancer ty 99.4 3.5E-14 1.2E-18 114.5 3.6 67 77-143 19-87 (112)
71 3knv_A TNF receptor-associated 99.4 1.8E-14 6.1E-19 120.4 1.4 71 70-140 22-101 (141)
72 1g25_A CDK-activating kinase a 99.4 7.1E-14 2.4E-18 100.7 4.0 55 78-132 2-61 (65)
73 2bay_A PRE-mRNA splicing facto 99.4 5.3E-14 1.8E-18 99.0 2.4 54 79-133 3-57 (61)
74 3hcs_A TNF receptor-associated 99.4 1.1E-13 3.7E-18 120.3 4.3 71 71-141 10-80 (170)
75 2ecj_A Tripartite motif-contai 99.4 3.7E-13 1.3E-17 94.5 6.2 50 71-120 7-58 (58)
76 2ct2_A Tripartite motif protei 99.4 4.8E-13 1.7E-17 102.7 6.6 56 72-127 8-69 (88)
77 1rmd_A RAG1; V(D)J recombinati 99.4 1.1E-13 3.6E-18 112.3 2.7 66 75-140 19-85 (116)
78 2d8t_A Dactylidin, ring finger 99.4 3.6E-13 1.2E-17 98.8 4.3 51 76-127 12-62 (71)
79 3ng2_A RNF4, snurf, ring finge 99.4 1.9E-13 6.6E-18 100.3 2.9 56 76-132 7-69 (71)
80 3ltm_A Alpha-REP4; protein eng 99.3 8.4E-11 2.9E-15 105.6 19.0 190 209-456 18-209 (211)
81 1e4u_A Transcriptional repress 99.3 1.7E-12 5.6E-17 96.4 6.2 55 75-129 7-65 (78)
82 2ea6_A Ring finger protein 4; 99.3 9.9E-13 3.4E-17 95.9 4.4 52 74-126 10-68 (69)
83 2ect_A Ring finger protein 126 99.3 1.7E-12 5.9E-17 97.1 5.3 58 74-132 10-70 (78)
84 2xeu_A Ring finger protein 4; 99.3 4.8E-13 1.7E-17 96.0 1.5 54 78-132 2-62 (64)
85 1oyz_A Hypothetical protein YI 99.2 2.7E-10 9.3E-15 107.0 17.5 194 168-406 23-220 (280)
86 3ltm_A Alpha-REP4; protein eng 99.2 3.5E-10 1.2E-14 101.5 17.3 187 167-411 18-207 (211)
87 3ltj_A Alpharep-4; protein eng 99.2 5.4E-10 1.8E-14 99.5 18.1 183 209-449 13-197 (201)
88 2ep4_A Ring finger protein 24; 99.2 1.7E-11 5.8E-16 90.6 6.5 53 74-127 10-65 (74)
89 2ecm_A Ring finger and CHY zin 99.2 5.5E-12 1.9E-16 87.4 3.5 47 78-125 4-54 (55)
90 1bor_A Transcription factor PM 99.2 3.2E-12 1.1E-16 88.7 2.3 47 77-127 4-50 (56)
91 1iym_A EL5; ring-H2 finger, ub 99.2 6.4E-12 2.2E-16 87.1 3.8 49 76-125 2-54 (55)
92 2l0b_A E3 ubiquitin-protein li 99.2 7.9E-12 2.7E-16 96.3 4.4 50 76-126 37-89 (91)
93 1chc_A Equine herpes virus-1 r 99.2 7.4E-12 2.5E-16 90.9 3.9 48 78-126 4-52 (68)
94 2kiz_A E3 ubiquitin-protein li 99.2 1.7E-11 5.8E-16 89.2 5.7 51 76-127 11-64 (69)
95 2ecn_A Ring finger protein 141 99.2 4.3E-12 1.5E-16 92.8 2.5 52 74-127 10-61 (70)
96 3ltj_A Alpharep-4; protein eng 99.2 9.3E-10 3.2E-14 97.9 17.1 182 168-407 14-198 (201)
97 1x4j_A Ring finger protein 38; 99.2 1.3E-11 4.6E-16 91.4 3.6 50 76-126 20-72 (75)
98 1oyz_A Hypothetical protein YI 99.1 2.8E-09 9.7E-14 100.0 18.7 196 209-449 22-220 (280)
99 1v87_A Deltex protein 2; ring- 99.1 4.1E-11 1.4E-15 96.6 5.0 48 79-126 25-94 (114)
100 4ap4_A E3 ubiquitin ligase RNF 99.1 2.2E-11 7.4E-16 101.2 2.5 54 77-131 5-65 (133)
101 4gmo_A Putative uncharacterize 99.1 4.9E-10 1.7E-14 118.6 13.4 193 257-451 36-259 (684)
102 4fdd_A Transportin-1; heat rep 99.1 7.2E-09 2.5E-13 112.7 22.6 273 169-453 129-432 (852)
103 4fdd_A Transportin-1; heat rep 99.1 6.8E-10 2.3E-14 120.8 14.3 271 169-453 175-474 (852)
104 4gmo_A Putative uncharacterize 99.1 5.9E-10 2E-14 118.0 11.7 190 210-406 34-257 (684)
105 4ic3_A E3 ubiquitin-protein li 99.0 3E-11 1E-15 89.0 0.8 46 76-126 21-67 (74)
106 2ecl_A Ring-box protein 2; RNF 99.0 1.7E-10 5.7E-15 86.6 3.5 49 78-127 14-77 (81)
107 2y1n_A E3 ubiquitin-protein li 99.0 2.2E-10 7.5E-15 110.0 4.3 49 79-127 332-380 (389)
108 2ecg_A Baculoviral IAP repeat- 98.9 2.9E-10 9.8E-15 84.0 2.6 47 76-127 22-69 (75)
109 2vgl_B AP-2 complex subunit be 98.9 3.5E-08 1.2E-12 102.8 19.3 255 169-451 50-312 (591)
110 2vje_A E3 ubiquitin-protein li 98.9 7.3E-10 2.5E-14 78.9 3.6 49 77-126 6-57 (64)
111 3dpl_R Ring-box protein 1; ubi 98.9 8.6E-10 3E-14 86.7 4.2 48 78-126 36-101 (106)
112 4ap4_A E3 ubiquitin ligase RNF 98.9 2.5E-10 8.4E-15 94.7 1.1 56 76-132 69-131 (133)
113 1ibr_B P95, importin beta-1 su 98.9 9.4E-08 3.2E-12 95.8 20.2 274 169-453 129-440 (462)
114 2vje_B MDM4 protein; proto-onc 98.9 7.7E-10 2.6E-14 78.5 3.0 48 78-126 6-56 (63)
115 1wim_A KIAA0161 protein; ring 98.8 6.4E-10 2.2E-14 86.1 1.4 66 78-144 4-83 (94)
116 1b3u_A Protein (protein phosph 98.8 1.4E-07 4.9E-12 97.6 19.4 262 170-450 89-353 (588)
117 2vgl_B AP-2 complex subunit be 98.8 1.9E-07 6.6E-12 97.1 18.6 266 169-453 122-422 (591)
118 2ea5_A Cell growth regulator w 98.8 5.3E-09 1.8E-13 75.3 4.6 46 76-126 12-58 (68)
119 2yho_A E3 ubiquitin-protein li 98.8 1.2E-09 4E-14 81.3 0.6 46 77-127 16-62 (79)
120 1b3u_A Protein (protein phosph 98.7 1.5E-06 5E-11 89.9 23.1 220 169-408 11-233 (588)
121 2d8s_A Cellular modulator of i 98.7 1.2E-08 4.1E-13 75.7 4.6 51 77-127 13-71 (80)
122 4a0k_B E3 ubiquitin-protein li 98.6 3.6E-09 1.2E-13 84.3 0.2 47 79-126 48-112 (117)
123 1w63_A Adapter-related protein 98.6 1E-06 3.6E-11 92.0 18.5 250 172-450 74-379 (618)
124 3t6p_A Baculoviral IAP repeat- 98.6 6.4E-09 2.2E-13 99.4 0.4 46 76-126 292-338 (345)
125 2bpt_A Importin beta-1 subunit 98.6 7.7E-07 2.6E-11 96.5 16.6 261 179-452 381-670 (861)
126 1u6g_C TIP120 protein, CAND1; 98.6 2.2E-07 7.7E-12 105.0 11.7 271 168-452 6-286 (1230)
127 1w63_A Adapter-related protein 98.5 1.6E-05 5.5E-10 83.0 23.0 248 170-451 144-415 (618)
128 1qgr_A Protein (importin beta 98.5 1.3E-06 4.3E-11 95.0 14.3 268 173-452 371-681 (876)
129 1qgr_A Protein (importin beta 98.5 7E-06 2.4E-10 89.1 20.1 274 169-453 129-440 (876)
130 2bpt_A Importin beta-1 subunit 98.4 4.1E-06 1.4E-10 90.7 17.6 271 169-453 412-714 (861)
131 1ibr_B P95, importin beta-1 su 98.4 1.8E-06 6.2E-11 86.3 12.0 265 172-452 5-290 (462)
132 2ct0_A Non-SMC element 1 homol 98.3 5.5E-07 1.9E-11 65.2 4.7 48 79-126 15-64 (74)
133 2qk2_A LP04448P; mini spindles 98.3 9.4E-06 3.2E-10 74.1 14.2 185 259-453 18-208 (242)
134 3b2a_A TON_1937, putative unch 98.3 3.4E-05 1.2E-09 68.0 15.4 220 210-448 33-259 (265)
135 1vyx_A ORF K3, K3RING; zinc-bi 98.2 2.1E-06 7.4E-11 59.6 4.9 48 78-125 5-58 (60)
136 2qk2_A LP04448P; mini spindles 98.2 1.1E-05 3.8E-10 73.6 11.2 178 173-365 20-205 (242)
137 3b2a_A TON_1937, putative unch 98.1 4.6E-05 1.6E-09 67.2 13.3 197 168-387 33-234 (265)
138 1u6g_C TIP120 protein, CAND1; 98.1 1.3E-05 4.5E-10 90.5 12.7 226 168-412 48-289 (1230)
139 2vgl_A Adaptor protein complex 98.1 0.00024 8.3E-09 74.0 20.4 276 131-449 86-397 (621)
140 1te4_A Conserved protein MTH18 98.0 1.5E-06 5.1E-11 71.4 2.5 118 209-362 11-130 (131)
141 3dad_A FH1/FH2 domain-containi 98.0 0.00024 8.3E-09 66.5 16.2 182 260-441 122-327 (339)
142 2vgl_A Adaptor protein complex 97.9 0.00018 6.1E-09 75.0 16.5 251 170-452 76-360 (621)
143 1te4_A Conserved protein MTH18 97.9 7E-07 2.4E-11 73.4 -1.5 117 256-404 12-130 (131)
144 3vk6_A E3 ubiquitin-protein li 97.9 4.7E-06 1.6E-10 62.7 3.1 46 81-126 3-49 (101)
145 2qk1_A Protein STU2; STU2P, XM 97.9 6.6E-05 2.3E-09 68.8 10.9 185 174-365 22-220 (249)
146 3k1l_B Fancl; UBC, ring, RWD, 97.9 2.7E-06 9.2E-11 79.1 1.0 49 78-126 307-373 (381)
147 2db0_A 253AA long hypothetical 97.9 0.0015 5.3E-08 55.3 17.4 214 166-408 30-247 (253)
148 2qk1_A Protein STU2; STU2P, XM 97.9 0.00022 7.6E-09 65.3 13.8 190 261-452 21-222 (249)
149 3dad_A FH1/FH2 domain-containi 97.8 0.00043 1.5E-08 64.8 14.9 152 302-454 123-290 (339)
150 1ho8_A Vacuolar ATP synthase s 97.8 0.00057 2E-08 67.2 16.4 221 228-450 182-476 (480)
151 4ady_A RPN2, 26S proteasome re 97.7 0.0023 7.9E-08 68.4 19.3 198 211-449 473-675 (963)
152 2iw3_A Elongation factor 3A; a 97.6 0.00099 3.4E-08 71.9 15.1 261 168-451 14-281 (986)
153 3tjz_B Coatomer subunit gamma; 97.5 0.0011 3.7E-08 63.6 13.6 244 170-451 70-317 (355)
154 2iw3_A Elongation factor 3A; a 97.5 0.024 8.3E-07 61.3 24.3 264 169-453 55-327 (986)
155 3tjz_B Coatomer subunit gamma; 97.2 0.00071 2.4E-08 64.8 8.0 264 130-445 79-348 (355)
156 1ho8_A Vacuolar ATP synthase s 97.1 0.059 2E-06 53.0 20.5 233 209-449 76-349 (480)
157 2fv2_A RCD1 required for cell 97.1 0.016 5.3E-07 51.9 14.7 205 169-375 4-234 (268)
158 4ady_A RPN2, 26S proteasome re 96.7 0.055 1.9E-06 58.0 18.0 168 211-411 508-680 (963)
159 3nw0_A Non-structural maintena 96.7 0.0011 3.7E-08 59.8 4.4 49 79-127 180-230 (238)
160 2db0_A 253AA long hypothetical 96.6 0.29 9.9E-06 41.6 18.5 215 210-453 32-249 (253)
161 2jun_A Midline-1; B-BOX, TRIM, 96.6 0.001 3.4E-08 51.5 2.6 34 78-111 2-38 (101)
162 1wa5_C Importin alpha RE-expor 96.1 0.083 2.8E-06 57.8 15.8 258 182-451 376-671 (960)
163 3i2d_A E3 SUMO-protein ligase 96.1 0.0099 3.4E-07 56.3 7.1 64 77-140 247-314 (371)
164 3oc3_A Helicase MOT1, MOT1; re 96.0 0.018 6E-07 57.4 8.5 243 170-446 176-432 (800)
165 4ffb_C Protein STU2; tubulin f 95.5 0.16 5.4E-06 46.7 12.8 184 173-365 14-212 (278)
166 3ebb_A Phospholipase A2-activa 95.5 0.2 7E-06 46.7 13.3 180 212-397 105-296 (304)
167 2of3_A ZYG-9; multifunctional 94.9 0.17 6E-06 46.0 10.5 168 178-363 57-234 (266)
168 4fo9_A E3 SUMO-protein ligase 94.9 0.046 1.6E-06 51.6 6.7 65 76-140 212-280 (360)
169 2fv2_A RCD1 required for cell 94.5 0.51 1.7E-05 42.3 12.1 141 314-455 73-229 (268)
170 1wa5_C Importin alpha RE-expor 94.4 0.92 3.1E-05 49.5 17.0 213 184-408 263-526 (960)
171 1weo_A Cellulose synthase, cat 94.2 0.072 2.5E-06 38.8 4.9 48 79-126 16-70 (93)
172 4ffb_C Protein STU2; tubulin f 94.2 1.1 3.6E-05 41.1 14.4 185 258-451 12-213 (278)
173 2bay_A PRE-mRNA splicing facto 94.0 0.02 6.8E-07 39.5 1.7 52 114-166 3-57 (61)
174 3ebb_A Phospholipase A2-activa 94.0 0.38 1.3E-05 44.8 11.0 131 310-446 161-302 (304)
175 2f42_A STIP1 homology and U-bo 93.8 0.027 9.4E-07 48.0 2.4 63 114-178 106-170 (179)
176 2x19_B Importin-13; nuclear tr 93.4 1.9 6.4E-05 46.9 17.1 175 266-449 459-645 (963)
177 2f31_A Diaphanous protein homo 93.4 0.37 1.3E-05 43.1 9.5 126 270-396 68-217 (233)
178 1upk_A MO25 protein; transfera 93.2 2 6.9E-05 40.1 14.0 193 256-450 78-283 (341)
179 2yu4_A E3 SUMO-protein ligase 92.6 0.061 2.1E-06 40.7 2.5 63 114-178 7-80 (94)
180 1upk_A MO25 protein; transfera 92.4 4.7 0.00016 37.7 15.3 157 292-449 73-237 (341)
181 2x1g_F Cadmus; transport prote 92.0 5.2 0.00018 43.5 18.2 174 268-451 476-664 (971)
182 3u0r_A Apoptosis inhibitor 5; 91.9 1.6 5.4E-05 42.8 12.0 133 166-322 27-159 (507)
183 3eg5_B Protein diaphanous homo 91.8 0.98 3.4E-05 43.6 10.6 145 247-394 102-281 (383)
184 2kr4_A Ubiquitin conjugation f 91.7 0.098 3.3E-06 38.7 2.6 62 114-178 14-77 (85)
185 2x1g_F Cadmus; transport prote 90.9 1.1 3.6E-05 49.0 11.1 215 180-408 477-723 (971)
186 3oc3_A Helicase MOT1, MOT1; re 90.5 0.51 1.8E-05 47.2 7.1 206 212-448 176-402 (800)
187 1wgm_A Ubiquitin conjugation f 90.5 0.086 2.9E-06 40.2 1.4 61 114-177 22-85 (98)
188 2kre_A Ubiquitin conjugation f 90.4 0.092 3.2E-06 40.2 1.4 62 114-178 29-92 (100)
189 2cs3_A Protein C14ORF4, MY039 90.1 0.37 1.3E-05 34.2 4.1 36 77-112 13-52 (93)
190 2f31_A Diaphanous protein homo 89.2 2.2 7.6E-05 37.9 9.9 128 200-329 35-183 (233)
191 2of3_A ZYG-9; multifunctional 89.2 1.8 6.1E-05 39.3 9.3 133 178-327 98-237 (266)
192 2bnx_A Diaphanous protein homo 89.2 1.9 6.4E-05 41.6 10.0 126 270-396 72-221 (386)
193 2x19_B Importin-13; nuclear tr 89.1 28 0.00094 37.6 22.9 210 227-450 462-714 (963)
194 3eg5_B Protein diaphanous homo 88.0 5.1 0.00017 38.5 12.2 160 187-349 87-275 (383)
195 2ko5_A Ring finger protein Z; 87.7 0.27 9.3E-06 36.2 2.2 47 78-127 27-74 (99)
196 2c2l_A CHIP, carboxy terminus 87.6 0.22 7.4E-06 45.8 2.1 63 114-178 208-272 (281)
197 1lrv_A LRV, leucine-rich repea 87.0 0.31 1.1E-05 43.9 2.7 59 198-279 63-121 (244)
198 3m1i_C Exportin-1; heat repeat 86.1 3.6 0.00012 45.2 11.3 216 169-408 17-264 (1049)
199 1t1h_A Gspef-atpub14, armadill 85.9 0.34 1.2E-05 34.8 2.0 62 114-177 8-71 (78)
200 4hat_C Exportin-1; heat repeat 85.8 16 0.00053 40.1 15.9 140 268-410 465-621 (1023)
201 3ibv_A Exportin-T; karyopherin 85.5 15 0.00052 40.0 15.6 210 229-450 458-730 (980)
202 2bnx_A Diaphanous protein homo 85.1 6.4 0.00022 37.8 11.2 145 296-440 46-222 (386)
203 1lrv_A LRV, leucine-rich repea 84.2 0.58 2E-05 42.1 3.1 54 248-319 67-120 (244)
204 3c2g_A SYS-1 protein; beta-cat 83.7 17 0.00058 34.1 12.5 109 237-348 265-377 (619)
205 4hat_C Exportin-1; heat repeat 82.9 16 0.00054 40.0 14.4 216 168-408 16-264 (1023)
206 3u0r_A Apoptosis inhibitor 5; 82.1 16 0.00055 35.9 12.3 119 308-446 39-159 (507)
207 3mjh_B Early endosome antigen 81.6 0.21 7.3E-06 29.6 -0.6 17 78-94 4-20 (34)
208 3ibv_A Exportin-T; karyopherin 81.3 39 0.0013 36.7 16.7 291 132-449 21-360 (980)
209 3c2g_A SYS-1 protein; beta-cat 80.2 28 0.00096 32.7 12.6 115 185-307 261-377 (619)
210 3a6p_A Exportin-5; exportin-5, 79.5 83 0.0028 35.0 19.6 252 179-443 59-373 (1204)
211 2jne_A Hypothetical protein YF 79.4 0.077 2.6E-06 39.3 -3.6 41 80-126 33-73 (101)
212 3l9t_A Putative uncharacterize 78.1 14 0.00047 32.7 9.6 128 305-454 79-211 (240)
213 3gjx_A Exportin-1; transport, 78.0 28 0.00095 38.2 14.1 216 168-409 28-277 (1073)
214 3m1i_C Exportin-1; heat repeat 77.3 45 0.0015 36.5 15.9 167 228-410 30-227 (1049)
215 1wil_A KIAA1045 protein; ring 77.2 3.6 0.00012 29.7 4.5 34 75-109 11-47 (89)
216 3ldz_A STAM-1, signal transduc 75.3 9.6 0.00033 30.7 7.4 71 379-450 44-114 (140)
217 1lsh_A Lipovitellin (LV-1N, LV 73.1 34 0.0011 37.6 13.3 126 260-411 444-580 (1056)
218 2lri_C Autoimmune regulator; Z 73.1 3.7 0.00013 28.4 3.7 46 77-124 10-60 (66)
219 1dvp_A HRS, hepatocyte growth 72.6 11 0.00038 33.0 7.7 33 75-107 157-193 (220)
220 2k5c_A Uncharacterized protein 72.2 0.94 3.2E-05 32.2 0.4 53 80-132 9-69 (95)
221 2jvx_A NF-kappa-B essential mo 70.8 1.1 3.8E-05 25.2 0.5 17 78-94 2-18 (28)
222 1x5b_A Signal transducing adap 69.8 17 0.00057 30.1 7.8 71 379-450 54-125 (163)
223 2o35_A Hypothetical protein DU 69.1 1.9 6.5E-05 32.0 1.5 13 100-112 42-54 (105)
224 3fyb_A Protein of unknown func 68.9 1.9 6.6E-05 31.9 1.5 13 100-112 41-53 (104)
225 3qml_C Protein SLS1, nucleotid 68.8 71 0.0024 29.3 13.1 147 298-450 23-189 (315)
226 3m62_A Ubiquitin conjugation f 68.3 1.5 5.1E-05 46.9 1.2 62 114-178 891-955 (968)
227 1lsh_A Lipovitellin (LV-1N, LV 66.2 67 0.0023 35.2 13.8 122 179-329 452-579 (1056)
228 3l9t_A Putative uncharacterize 66.1 70 0.0024 28.2 12.9 144 257-419 72-219 (240)
229 3gjx_A Exportin-1; transport, 65.0 1.7E+02 0.0057 32.1 17.2 212 212-450 30-275 (1073)
230 3ttc_A HYPF, transcriptional r 64.6 3.2 0.00011 42.8 2.7 49 76-124 14-99 (657)
231 3a6p_A Exportin-5; exportin-5, 64.3 83 0.0028 35.0 14.3 212 170-409 13-278 (1204)
232 3g2s_A C-terminal fragment of 64.2 24 0.00082 28.7 7.5 72 378-450 49-126 (149)
233 4g9i_A Hydrogenase maturation 64.2 3.2 0.00011 43.8 2.7 50 76-125 103-189 (772)
234 1mhq_A ADP-ribosylation factor 63.3 20 0.00068 29.1 6.9 71 379-450 40-116 (148)
235 3pst_A Protein DOA1; protein d 63.3 7.7 0.00026 37.5 5.0 100 227-329 275-392 (425)
236 1m3v_A FLIN4, fusion of the LI 63.2 4.5 0.00015 31.7 2.9 51 78-129 31-84 (122)
237 3vth_A Hydrogenase maturation 63.1 3.4 0.00012 43.5 2.6 51 75-125 107-194 (761)
238 2jrp_A Putative cytoplasmic pr 62.9 0.45 1.5E-05 34.3 -2.8 41 80-126 3-43 (81)
239 1juq_A ADP-ribosylation factor 62.2 22 0.00076 29.6 7.1 71 379-450 52-128 (171)
240 3gae_A Protein DOA1; UFD3, CDC 61.8 4 0.00014 36.7 2.6 99 227-329 103-220 (253)
241 3pwf_A Rubrerythrin; non heme 56.7 3.8 0.00013 34.4 1.4 14 77-90 136-149 (170)
242 2xqn_T Testin, TESS; metal-bin 56.4 5.5 0.00019 31.3 2.3 46 78-126 29-75 (126)
243 2k16_A Transcription initiatio 56.2 2.7 9.1E-05 29.9 0.3 49 77-125 16-70 (75)
244 3l3f_X Protein DOA1, DOA1/UFD3 55.8 9.3 0.00032 36.2 4.0 99 227-328 212-328 (362)
245 3zyq_A Hepatocyte growth facto 55.7 27 0.00092 30.6 6.9 71 379-450 47-118 (226)
246 1e8j_A Rubredoxin; iron-sulfur 54.2 8.4 0.00029 25.1 2.4 18 70-87 27-44 (52)
247 3ztg_A E3 ubiquitin-protein li 53.9 7.3 0.00025 28.5 2.5 62 114-177 13-79 (92)
248 3qml_C Protein SLS1, nucleotid 52.8 75 0.0026 29.1 9.3 142 261-407 27-189 (315)
249 1elk_A Target of MYB1; superhe 51.5 45 0.0015 27.2 7.2 72 379-450 55-130 (157)
250 2lbm_A Transcriptional regulat 49.6 15 0.00052 29.6 3.8 44 77-122 61-116 (142)
251 1dvp_A HRS, hepatocyte growth 49.2 45 0.0015 28.9 7.3 71 379-450 44-115 (220)
252 3ldz_A STAM-1, signal transduc 48.9 41 0.0014 26.9 6.4 70 257-326 43-114 (140)
253 2fiy_A Protein FDHE homolog; F 48.7 1.4 4.7E-05 41.0 -2.9 46 77-123 180-231 (309)
254 2rgt_A Fusion of LIM/homeobox 48.2 18 0.00061 30.0 4.2 48 77-127 31-78 (169)
255 1weu_A Inhibitor of growth fam 47.9 13 0.00045 27.4 2.9 45 77-124 34-86 (91)
256 4rxn_A Rubredoxin; electron tr 47.8 7.5 0.00026 25.6 1.4 18 70-87 27-44 (54)
257 3vhs_A ATPase wrnip1; zinc fin 47.0 4.8 0.00016 21.6 0.3 11 80-90 7-17 (29)
258 3gs3_A Symplekin, LD45768P; he 46.6 31 0.001 30.9 5.8 87 229-323 30-116 (257)
259 2jtn_A LIM domain-binding prot 46.6 13 0.00046 31.2 3.3 46 79-127 87-132 (182)
260 2kn9_A Rubredoxin; metalloprot 45.3 11 0.00038 27.1 2.1 18 70-87 51-68 (81)
261 2gmg_A Hypothetical protein PF 45.0 5 0.00017 30.4 0.2 30 89-124 65-94 (105)
262 3htk_C E3 SUMO-protein ligase 44.8 3 0.0001 37.5 -1.2 61 115-177 182-248 (267)
263 1wen_A Inhibitor of growth fam 44.4 17 0.00057 25.4 2.9 47 76-125 13-67 (71)
264 2v3b_B Rubredoxin 2, rubredoxi 43.4 10 0.00034 25.1 1.5 18 70-87 27-44 (55)
265 1x61_A Thyroid receptor intera 42.9 23 0.00079 24.2 3.6 33 79-111 33-66 (72)
266 6rxn_A Rubredoxin; electron tr 42.6 8.7 0.0003 24.4 1.0 14 74-87 25-38 (46)
267 1yk4_A Rubredoxin, RD; electro 42.4 10 0.00035 24.7 1.4 18 70-87 26-43 (52)
268 1x5b_A Signal transducing adap 40.8 68 0.0023 26.4 6.6 70 257-326 53-125 (163)
269 3g2s_A C-terminal fragment of 40.6 79 0.0027 25.6 6.9 71 257-327 49-127 (149)
270 2cup_A Skeletal muscle LIM-pro 40.3 8.8 0.0003 28.6 1.0 46 78-126 32-78 (101)
271 2cor_A Pinch protein; LIM doma 40.1 31 0.0011 24.3 3.9 39 80-127 16-54 (79)
272 2l5u_A Chromodomain-helicase-D 40.1 12 0.00043 25.1 1.6 44 77-122 9-57 (61)
273 1dx8_A Rubredoxin; electron tr 40.1 14 0.00047 25.8 1.8 18 70-87 31-48 (70)
274 2xjy_A Rhombotin-2; oncoprotei 40.0 18 0.00061 28.4 2.9 49 77-126 27-78 (131)
275 1rut_X Flinc4, fusion protein 39.7 7.2 0.00025 33.2 0.4 48 78-126 31-81 (188)
276 1nyp_A Pinch protein; LIM doma 39.6 14 0.00049 24.9 2.0 37 81-126 7-43 (66)
277 2l43_A N-teminal domain from h 39.5 6.6 0.00022 28.9 0.1 53 76-128 22-80 (88)
278 3fl2_A E3 ubiquitin-protein li 39.4 16 0.00053 28.5 2.4 63 114-178 52-117 (124)
279 1f62_A Transcription factor WS 39.2 13 0.00044 23.9 1.5 42 81-122 2-49 (51)
280 2pv0_B DNA (cytosine-5)-methyl 39.1 24 0.00083 33.5 4.0 69 78-147 92-172 (386)
281 1z6u_A NP95-like ring finger p 38.9 16 0.00054 29.8 2.4 63 114-178 78-143 (150)
282 2d8x_A Protein pinch; LIM doma 38.7 15 0.00052 25.1 2.0 24 81-104 7-30 (70)
283 2dar_A PDZ and LIM domain prot 38.6 14 0.00048 26.9 1.9 40 79-127 25-64 (90)
284 3gae_A Protein DOA1; UFD3, CDC 38.4 1.2E+02 0.0042 26.8 8.5 100 308-410 101-220 (253)
285 1vfy_A Phosphatidylinositol-3- 38.2 19 0.00064 25.2 2.4 29 79-107 11-43 (73)
286 1mhq_A ADP-ribosylation factor 38.1 77 0.0026 25.6 6.4 71 257-327 39-117 (148)
287 1joc_A EEA1, early endosomal a 37.9 13 0.00043 29.3 1.6 28 80-107 70-101 (125)
288 1wig_A KIAA1808 protein; LIM d 37.2 23 0.00077 24.6 2.7 36 81-125 7-42 (73)
289 1mm2_A MI2-beta; PHD, zinc fin 37.2 10 0.00035 25.6 0.8 45 78-124 8-57 (61)
290 2eps_A POZ-, at HOOK-, and zin 36.8 47 0.0016 20.8 4.2 38 78-126 11-53 (54)
291 3uk3_C Zinc finger protein 217 36.6 18 0.00061 23.0 2.0 41 79-126 4-44 (57)
292 1x62_A C-terminal LIM domain p 36.2 33 0.0011 24.1 3.5 41 77-126 13-53 (79)
293 1s24_A Rubredoxin 2; electron 36.1 17 0.00059 26.5 1.9 18 70-87 59-76 (87)
294 1iml_A CRIP, cysteine rich int 36.1 20 0.0007 24.9 2.4 45 77-124 25-71 (76)
295 3lqh_A Histone-lysine N-methyl 35.7 7.7 0.00026 32.9 0.0 45 80-124 3-64 (183)
296 1yuz_A Nigerythrin; rubrythrin 35.4 17 0.00059 31.3 2.2 13 78-90 170-182 (202)
297 1juq_A ADP-ribosylation factor 34.8 68 0.0023 26.6 5.7 71 257-327 51-129 (171)
298 1wyh_A SLIM 2, skeletal muscle 34.5 21 0.00071 24.5 2.2 37 81-126 7-45 (72)
299 2kkx_A Uncharacterized protein 34.4 32 0.0011 25.6 3.1 52 76-129 24-82 (102)
300 1lko_A Rubrerythrin all-iron(I 34.1 11 0.00037 32.2 0.7 9 115-123 172-180 (191)
301 1x64_A Alpha-actinin-2 associa 33.5 39 0.0014 24.3 3.7 42 77-127 23-64 (89)
302 2lv2_A Insulinoma-associated p 33.3 58 0.002 23.3 4.5 40 76-126 25-68 (85)
303 1wep_A PHF8; structural genomi 33.1 70 0.0024 22.5 4.8 47 78-125 11-65 (79)
304 3v43_A Histone acetyltransfera 32.7 49 0.0017 25.2 4.2 44 78-121 4-62 (112)
305 3vld_A DNA mismatch repair pro 32.4 3.7E+02 0.013 26.4 14.1 162 229-406 51-224 (500)
306 1x4l_A Skeletal muscle LIM-pro 32.3 27 0.00094 23.9 2.5 36 81-125 7-46 (72)
307 2epq_A POZ-, at HOOK-, and zin 32.1 53 0.0018 19.4 3.6 13 79-91 10-22 (45)
308 2jmo_A Parkin; IBR, E3 ligase, 32.0 5.1 0.00018 28.8 -1.5 33 79-111 25-70 (80)
309 3zyq_A Hepatocyte growth facto 32.0 67 0.0023 28.0 5.5 70 339-408 46-119 (226)
310 2l4z_A DNA endonuclease RBBP8, 31.8 30 0.001 27.0 2.9 38 79-125 61-99 (123)
311 1z2q_A LM5-1; membrane protein 31.7 25 0.00085 25.4 2.2 31 78-108 20-54 (84)
312 2yw8_A RUN and FYVE domain-con 31.7 24 0.00081 25.3 2.1 30 79-108 19-52 (82)
313 2kdx_A HYPA, hydrogenase/ureas 31.6 17 0.00058 28.3 1.4 11 114-124 89-100 (119)
314 1bbo_A Human enhancer-binding 31.0 36 0.0012 21.4 2.8 36 80-126 2-41 (57)
315 4gzn_C ZFP-57, zinc finger pro 30.6 31 0.0011 22.9 2.4 37 79-126 4-44 (60)
316 2ee8_A Protein ODD-skipped-rel 30.1 1.2E+02 0.004 21.9 6.1 16 76-91 14-29 (106)
317 2lce_A B-cell lymphoma 6 prote 30.0 49 0.0017 22.3 3.6 39 77-126 15-57 (74)
318 2vpb_A Hpygo1, pygopus homolog 29.9 28 0.00096 23.7 2.1 30 77-106 6-40 (65)
319 2ct7_A Ring finger protein 31; 29.9 6.7 0.00023 28.6 -1.2 29 81-109 27-61 (86)
320 2lv9_A Histone-lysine N-methyl 29.7 17 0.00059 27.2 1.0 44 78-122 27-75 (98)
321 2dlo_A Thyroid receptor-intera 29.3 22 0.00076 25.1 1.6 39 80-127 16-54 (81)
322 1x6a_A LIMK-2, LIM domain kina 29.2 30 0.001 24.3 2.3 36 81-125 17-52 (81)
323 1wem_A Death associated transc 28.8 18 0.00063 25.4 1.0 45 78-123 15-70 (76)
324 2epr_A POZ-, at HOOK-, and zin 28.7 51 0.0017 19.9 3.1 35 77-122 10-48 (48)
325 1x4u_A Zinc finger, FYVE domai 28.5 27 0.00092 25.2 1.9 28 79-106 14-45 (84)
326 1x6e_A Zinc finger protein 24; 28.3 36 0.0012 22.9 2.5 38 78-126 13-54 (72)
327 1v6g_A Actin binding LIM prote 28.2 30 0.001 24.4 2.1 38 81-127 17-54 (81)
328 2adr_A ADR1; transcription reg 27.7 50 0.0017 21.0 3.1 36 80-126 3-42 (60)
329 1y02_A CARP2, FYVE-ring finger 27.6 24 0.00082 27.5 1.6 43 78-121 18-64 (120)
330 3t7l_A Zinc finger FYVE domain 27.4 26 0.00091 25.6 1.7 30 79-108 20-53 (90)
331 2d8z_A Four and A half LIM dom 27.2 42 0.0014 22.7 2.7 34 78-111 30-64 (70)
332 1wfk_A Zinc finger, FYVE domai 27.1 28 0.00097 25.4 1.8 30 78-107 8-41 (88)
333 3rru_A TOM1L1 protein; structu 27.1 80 0.0027 25.6 4.8 73 378-450 54-130 (152)
334 2cu8_A Cysteine-rich protein 2 26.7 27 0.00093 24.2 1.6 38 81-127 11-49 (76)
335 2lcq_A Putative toxin VAPC6; P 26.7 11 0.00038 31.2 -0.6 11 115-125 149-159 (165)
336 3a1b_A DNA (cytosine-5)-methyl 26.3 28 0.00096 28.5 1.8 51 78-130 78-141 (159)
337 1x68_A FHL5 protein; four-and- 25.7 30 0.001 24.0 1.7 37 81-126 7-47 (76)
338 3hct_A TNF receptor-associated 25.3 40 0.0014 25.8 2.5 61 115-177 19-81 (118)
339 1j2o_A FLIN2, fusion of rhombo 25.0 72 0.0025 24.2 4.0 36 77-112 28-66 (114)
340 1l8d_A DNA double-strand break 24.5 19 0.00065 27.5 0.5 11 116-126 49-59 (112)
341 3o36_A Transcription intermedi 24.4 15 0.00051 31.0 -0.2 45 79-125 4-53 (184)
342 2wbt_A B-129; zinc finger; 2.7 24.3 58 0.002 24.9 3.4 14 113-126 99-112 (129)
343 2ysm_A Myeloid/lymphoid or mix 23.9 21 0.00071 27.3 0.6 44 78-121 6-55 (111)
344 1x63_A Skeletal muscle LIM-pro 23.4 44 0.0015 23.5 2.3 38 81-127 17-56 (82)
345 1x4k_A Skeletal muscle LIM-pro 23.2 35 0.0012 23.2 1.7 37 81-126 7-45 (72)
346 1vd4_A Transcription initiatio 23.2 4.4 0.00015 27.1 -3.1 38 78-127 13-52 (62)
347 1b8t_A Protein (CRP1); LIM dom 23.1 46 0.0016 28.1 2.7 51 80-130 35-131 (192)
348 2cuq_A Four and A half LIM dom 22.6 43 0.0015 23.4 2.1 37 81-126 17-53 (80)
349 2cur_A Skeletal muscle LIM-pro 22.6 60 0.002 21.8 2.8 34 78-111 30-64 (69)
350 3pst_A Protein DOA1; protein d 22.4 5.2E+02 0.018 24.8 11.6 129 273-410 243-392 (425)
351 1z60_A TFIIH basal transcripti 22.3 64 0.0022 21.5 2.7 39 81-120 17-58 (59)
352 2eov_A Zinc finger protein 484 22.1 1.2E+02 0.004 17.7 3.9 14 79-92 12-25 (46)
353 2eq4_A Zinc finger protein 224 22.0 1.2E+02 0.0042 17.6 4.0 14 79-92 12-25 (46)
354 2ctd_A Zinc finger protein 512 21.8 62 0.0021 23.5 2.9 36 80-126 35-74 (96)
355 2ctu_A Zinc finger protein 483 21.7 20 0.0007 24.0 0.1 35 78-126 17-51 (73)
356 1rmd_A RAG1; V(D)J recombinati 21.6 54 0.0018 24.9 2.6 63 114-177 23-87 (116)
357 2ytn_A Zinc finger protein 347 21.5 1.2E+02 0.0042 17.7 3.9 15 78-92 11-25 (46)
358 1elk_A Target of MYB1; superhe 21.5 1.6E+02 0.0053 23.9 5.6 74 167-242 52-129 (157)
359 2ckl_B Ubiquitin ligase protei 21.5 39 0.0014 27.6 1.9 62 115-178 55-120 (165)
360 2cot_A Zinc finger protein 435 21.3 93 0.0032 21.0 3.7 39 77-126 16-58 (77)
361 3mv2_A Coatomer subunit alpha; 21.3 1.6E+02 0.0054 27.2 6.0 80 26-123 229-312 (325)
362 3mkr_B Coatomer subunit alpha; 21.3 2.4E+02 0.0082 25.9 7.2 80 26-123 220-303 (320)
363 2ytt_A Zinc finger protein 473 20.8 1.3E+02 0.0044 17.6 3.9 14 79-92 12-25 (46)
364 2eop_A Zinc finger protein 268 20.8 1.3E+02 0.0044 17.5 4.0 14 79-92 12-25 (46)
365 3o2t_A Symplekin; heat repeat, 20.8 4.2E+02 0.014 25.1 9.1 180 230-417 41-266 (386)
366 1zfo_A LAsp-1; LIM domain, zin 20.6 43 0.0015 18.9 1.3 25 81-105 5-30 (31)
367 1vdy_A Hypothetical protein (R 20.5 2E+02 0.007 22.8 5.8 70 379-452 51-132 (140)
368 2ct1_A Transcriptional repress 20.4 55 0.0019 22.2 2.3 38 78-126 14-57 (77)
369 3d00_A Tungsten formylmethanof 20.4 28 0.00096 29.6 0.7 26 77-107 161-186 (191)
370 2ytq_A Zinc finger protein 268 20.3 1.4E+02 0.0048 17.4 4.0 14 79-92 12-25 (46)
371 2epz_A Zinc finger protein 28 20.3 1.3E+02 0.0044 17.5 3.8 14 79-92 12-25 (46)
372 3vld_A DNA mismatch repair pro 20.3 4.2E+02 0.014 25.9 9.0 102 226-336 91-195 (500)
373 2emk_A Zinc finger protein 28 20.2 1.4E+02 0.0047 17.4 4.0 14 79-92 12-25 (46)
374 1x5w_A Zinc finger protein 64, 20.1 74 0.0025 21.0 2.9 38 78-126 8-49 (70)
375 3ql9_A Transcriptional regulat 20.1 99 0.0034 24.3 3.8 43 78-122 56-110 (129)
376 2drp_A Protein (tramtrack DNA- 20.1 48 0.0016 21.6 1.8 37 79-126 10-52 (66)
377 2egq_A FHL1 protein; LIM domai 20.1 44 0.0015 23.1 1.7 39 80-127 16-59 (77)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=7.2e-33 Score=269.68 Aligned_cols=269 Identities=18% Similarity=0.175 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCC-------CCCCChhHHHHHHHHHHhcccCch-hhhhhhc
Q 012677 182 SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPG-------RADTDPGLLEDLITTILNLSIHDE-NKRLVAE 253 (458)
Q Consensus 182 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-------~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~ 253 (458)
+.+..|++.|.+++.+ +++|..|.+ .|+++.|+.+|... ....++.++..|+++|.||+.+++ ++..+..
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHH-TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHH-cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445799999999986 899999999 99999999999521 011246789999999999998876 6777766
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc--CcchhHhhccCchHHHHHHh-hcCChHHHHHHHHHHHHhcc-ccc
Q 012677 254 NPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL--DSNKLIIGKLGAMTPLIDLL-EEGHPLAMKDVASAIFSLCI-LLE 329 (458)
Q Consensus 254 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~-~~~ 329 (458)
.+|++|.|+.+|++++.++++.|+++|.||+.. ++++..|++.|+|++|+.+| +++++.+++.|+.+|+||+. .++
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 666799999999999999999999999999975 46899999999999999975 56788999999999999999 557
Q ss_pred chhHHH-hhCcHHHHHHHhccC--C----cHHHHHHHHHHhcC----CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 330 NKRRAV-HAGAVRVILRKIMEN--S----LVDELLAILAMLSS----HQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 330 ~~~~i~-~~g~v~~Lv~ll~~~--~----~~~~a~~~L~~La~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
++..++ ..|+++.|+++|.++ . +++.|+++|.+|+. +++++..+++.|+++.|+++|+++ +..++++|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A 283 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNA 283 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHH
Confidence 888888 689999999999865 2 68899999999995 899999999999999999999965 59999999
Q ss_pred HHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 399 AAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 399 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+++|+||+.+++.. +..+.+.|++++|++|+.++++.+++.|+++|++|+...+.
T Consensus 284 ~~aL~nLa~~~~~~-~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 284 CGTLWNLSARNPKD-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHTSSCHHH-HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999876554 35556699999999999999999999999999999987554
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=2.7e-31 Score=269.25 Aligned_cols=279 Identities=17% Similarity=0.188 Sum_probs=240.5
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-ch
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DE 246 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~ 246 (458)
.++.+|+.|. ++++.|..|+..|++++.+++.++..+.+ .|+||.|+.+|+++ ++.++..|+++|.||+.+ ++
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~s~----~~~~~~~A~~aL~nLa~~~~~ 77 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSP----NQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTTSS----CHHHHHHHHHHHHHHHSSCHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHH
Confidence 5788999995 67889999999999999888888988998 99999999999975 889999999999999987 77
Q ss_pred hhhhhhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhh--------cC--------
Q 012677 247 NKRLVAENPLAIPLLIDSVR-TGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLE--------EG-------- 309 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--------~~-------- 309 (458)
++..+++.| ++|.|+.+|+ +++.++++.|+++|.||+.+++++..+++ |+|++|+.+|. ++
T Consensus 78 ~k~~i~~~G-~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 78 NKLETRRQN-GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHTT-CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHHHcC-CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccc
Confidence 999999885 9999999999 88999999999999999999889999999 99999999993 22
Q ss_pred ChHHHHHHHHHHHHhcccccchhHHHhh-CcHHHHHHHhcc--------CCcHHHHHHHHHHhcCCH-------------
Q 012677 310 HPLAMKDVASAIFSLCILLENKRRAVHA-GAVRVILRKIME--------NSLVDELLAILAMLSSHQ------------- 367 (458)
Q Consensus 310 ~~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~--------~~~~~~a~~~L~~La~~~------------- 367 (458)
++.++..|+++|+||+.+++++..+++. |+++.|+.+|.+ ....+.++.+|.+|+...
T Consensus 156 ~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 3556679999999999998889999997 999999999985 257889999999997421
Q ss_pred --------------------------------------HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 368 --------------------------------------DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 368 --------------------------------------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
.+.+.+++.|+++.|+.+|.++.++.+++.|+++|.||+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315 (457)
T ss_dssp TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence 122334566789999999998777999999999999999876
Q ss_pred chh---H-HHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 410 RTR---T-REIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 410 ~~~---~-~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
... . +.++.+.|+++.|++|+.++++++++.|+++|++|+...+.
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~ 364 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL 364 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG
T ss_pred CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH
Confidence 432 1 34555689999999999999999999999999999986543
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=1.5e-31 Score=267.91 Aligned_cols=265 Identities=18% Similarity=0.183 Sum_probs=230.2
Q ss_pred HHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCC-----C--CCCCChhHHHHHHHHHHhcccCch-hhhhhhcCCC
Q 012677 185 KEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSP-----G--RADTDPGLLEDLITTILNLSIHDE-NKRLVAENPL 256 (458)
Q Consensus 185 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-----~--~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~ 256 (458)
.+|++.|.+++. ++++|..|.+ .|++++|+.+|.. + ....++.++..|+++|.||+.+++ ++..+...+|
T Consensus 166 ~qAv~aL~nls~-~~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 166 CPAVCVLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHH-CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 389999999977 4899999999 9999999999942 0 001246789999999999998876 5666655666
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhcc--CcchhHhhccCchHHHHHHh-hcCChHHHHHHHHHHHHhcc-cccchh
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSAL--DSNKLIIGKLGAMTPLIDLL-EEGHPLAMKDVASAIFSLCI-LLENKR 332 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~-~~~~~~ 332 (458)
++|.|+.+|++++.++++.|+++|.||+.. ++++..|++.|+|++||.+| +++++.+++.|+.+|+||+. .++++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 799999999999999999999999999984 46889999999999999975 55788999999999999999 668888
Q ss_pred HHH-hhCcHHHHHHHhccC--C----cHHHHHHHHHHhc----CCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 333 RAV-HAGAVRVILRKIMEN--S----LVDELLAILAMLS----SHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 333 ~i~-~~g~v~~Lv~ll~~~--~----~~~~a~~~L~~La----~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
.++ ..|+++.|+++|.++ . +++.|+++|.+|+ .+++++..+++.|+++.|+.+|+++ +..++++|+++
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~a 402 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGT 402 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHH
Confidence 888 689999999999865 2 6889999999998 4899999999999999999999965 48999999999
Q ss_pred HHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 402 LYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 402 L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
|+||+.++++.. ..+.+.|++++|++|+.++++.+++.|+++|++|+...+
T Consensus 403 L~nLa~~~~~~~-~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 403 LWNLSARNPKDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHSSCHHHH-HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHcCCHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999998766543 555568999999999999999999999999999997653
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=1.5e-30 Score=266.38 Aligned_cols=278 Identities=19% Similarity=0.242 Sum_probs=237.2
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC--c
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH--D 245 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~--~ 245 (458)
.++.||+.|. ++.+.|..|+..|.+++..++.++..|.+ .|+||.|+.+|.++ +..+++.|+++|.||+.+ +
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~-~G~Ip~LV~LL~s~----~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK-LKGIPVLVGLLDHP----KKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHGGGCS----SHHHHHHHHHHHHHHTSSSCH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCcHHHHHHHCCC----CHHHHHHHHHHHHHHHccCCH
Confidence 6889999995 56788999999999999988999999999 99999999999985 899999999999999985 7
Q ss_pred hhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhh-----------------
Q 012677 246 ENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLE----------------- 307 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----------------- 307 (458)
+++..+++.| ++|.|+.+|++ ++.++++.|+++|.||+.+++++..|++ |+|++|+.++.
T Consensus 124 ~nk~~I~~~G-aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 124 DNKIAIKNCD-GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------
T ss_pred HHHHHHHHcC-CHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccc
Confidence 7999999985 99999999998 5789999999999999999999999996 57999999872
Q ss_pred -cCChHHHHHHHHHHHHhccccc-chhHHHhh-CcHHHHHHHhcc------C--CcHHHHHHHHHHhcCCHH--------
Q 012677 308 -EGHPLAMKDVASAIFSLCILLE-NKRRAVHA-GAVRVILRKIME------N--SLVDELLAILAMLSSHQD-------- 368 (458)
Q Consensus 308 -~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~-g~v~~Lv~ll~~------~--~~~~~a~~~L~~La~~~~-------- 368 (458)
..++.++.+|+++|+||+...+ +|..+++. |+++.|+.+|.+ . ..++.|+++|.||+..-.
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 1256899999999999999875 58888885 778899999974 1 478999999999997521
Q ss_pred ------------------HHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc---hhHHHHHHhhhhhHHHH
Q 012677 369 ------------------AIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR---TRTREIMEEENANGTLS 427 (458)
Q Consensus 369 ------------------~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~~~~~~g~~~~L~ 427 (458)
+.+.+.+.++|+.|+.+|+.+.++.+++.|+++|.|||.+.. ...+.++.+.++++.|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 111223345678899999876679999999999999998653 22344666688999999
Q ss_pred HHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 428 RLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 428 ~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
+|+.++++.+++.|+++|++|+....
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 99999999999999999999997654
No 5
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=7.5e-29 Score=261.89 Aligned_cols=280 Identities=16% Similarity=0.170 Sum_probs=242.4
Q ss_pred hhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCc-----------------------------hhh---hhhhhccCCh
Q 012677 166 SRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMP-----------------------------LFR---ALFGESTDAI 212 (458)
Q Consensus 166 ~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~---~~i~~~~g~i 212 (458)
+.+.++.||+.|+ ++...+..|+..|.+++..++ .++ ..+.+ .|++
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve-aGaV 497 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN-EGIT 497 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH-TTHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH-CcCH
Confidence 3468999999995 567889999999999998543 122 56778 8999
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhH
Q 012677 213 PLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLI 292 (458)
Q Consensus 213 ~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 292 (458)
|.|+.+|+++ ++.+++.|+++|.|++.+++++..+++.| ++|.|+.+|.+++...++.|+++|.+|+.+.+....
T Consensus 498 p~LV~LL~s~----s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G-aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 498 TALCALAKTE----SHNSQELIARVLNAVCGLKELRGKVVQEG-GVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp HHHHHHHTCC----CHHHHHHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 9999999985 89999999999999999988999999985 999999999999999999999999999876544333
Q ss_pred hh---ccCchHHHHHHhhcC-ChHHHHHHHHHHHHhcccc-cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 293 IG---KLGAMTPLIDLLEEG-HPLAMKDVASAIFSLCILL-ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 293 i~---~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
+. ..|+|++|+.+|.++ +...+..|+++|.||+..+ +++..++++|+++.|+.+|.++ .++..|+++|+||+.
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 32 257999999999866 4445578999999999975 6788899999999999999876 689999999999999
Q ss_pred CHHHHHHHHh-cCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHH
Q 012677 366 HQDAIEEIGE-LGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGI 444 (458)
Q Consensus 366 ~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~ 444 (458)
+++.+..+++ .|+++.|+.++... +..++..|+++|++|+.+++...+.++...|+++.|+.|+.+++..+++.|+++
T Consensus 653 ~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a 731 (810)
T 3now_A 653 SEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731 (810)
T ss_dssp SHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred ChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999986 78999999999964 599999999999999997665555666548999999999999999999999999
Q ss_pred HHHHHhhH
Q 012677 445 LERLNKAA 452 (458)
Q Consensus 445 L~~l~~~~ 452 (458)
|.|+....
T Consensus 732 L~NL~~~s 739 (810)
T 3now_A 732 ILNMINAG 739 (810)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhCC
Confidence 99998643
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=5.2e-29 Score=249.57 Aligned_cols=282 Identities=20% Similarity=0.210 Sum_probs=235.1
Q ss_pred hhhhhhhhHHhhcCC-------------cHHHHHHHHHHHHHHhhCchhhhhhhhccCCh----------HHHhhccCCC
Q 012677 166 SRSHLNSLLEKMSSS-------------LSDQKEAAKELRLLTKRMPLFRALFGESTDAI----------PLLLSPLSPG 222 (458)
Q Consensus 166 ~~~~l~~Lv~~l~~~-------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i----------~~Lv~lL~~~ 222 (458)
+.+.++.||+.|..+ .+.+.+|+++|.+++..++.......+ .|++ +.+++++.+.
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRRE-IRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHH-HHHHHHHHHhhhhhHHHHHHHHhh
Confidence 446789999999531 478899999999999998888777777 6777 6677777765
Q ss_pred CCCCC----------hhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhc-----------CCHHHHHHHHHHHH
Q 012677 223 RADTD----------PGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT-----------GTIETRRNAAAALF 281 (458)
Q Consensus 223 ~~~~~----------~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~-----------~~~~~~~~a~~~L~ 281 (458)
....+ ...+..|+++|.|++.++++|..+++.| +++.|+.+|.. .+..++..|+++|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G-~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG-GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCC-CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 31111 1223499999999999999999999985 99999999952 24678999999999
Q ss_pred HhhccCc-chhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhccc--ccchhHHHhhCcHHHHHHHhc-cC--CcHH
Q 012677 282 SLSALDS-NKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL--LENKRRAVHAGAVRVILRKIM-EN--SLVD 354 (458)
Q Consensus 282 ~Ls~~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~--~~~~~~i~~~g~v~~Lv~ll~-~~--~~~~ 354 (458)
||+.+++ ++..+.. .|+||+|+.+|++++++++..|+++|.||+.. ++++..+++.|++++|+++|. ++ .+++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 9998776 5666654 67799999999999999999999999999985 468899999999999999864 33 5788
Q ss_pred HHHHHHHHhcC-CHHHHHHHH-hcCCHHHHHHHHhhcCCh---hHHhHHHHHHHHHhc---cCchhHHHHHHhhhhhHHH
Q 012677 355 ELLAILAMLSS-HQDAIEEIG-ELGAIPCLLRIIRESTCE---RNKENCAAILYNICF---TDRTRTREIMEEENANGTL 426 (458)
Q Consensus 355 ~a~~~L~~La~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~---~~~~~a~~~L~~L~~---~~~~~~~~~~~~~g~~~~L 426 (458)
.++.+|++|+. +++++..|+ ..|+++.|+++|....+. .+++.|+++|.||+. ..++. +..+.+.|+++.|
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~-~~~i~~~G~i~~L 384 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH-RQILRENNCLQTL 384 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH-HHHHHHcccHHHH
Confidence 99999999999 889999998 799999999999965422 489999999999997 45443 4666679999999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 427 SRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 427 ~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
+.++.+++..+++.|+++|++|+.
T Consensus 385 v~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 385 LQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCChHHHHHHHHHHHHHHc
Confidence 999999999999999999999994
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=1.7e-28 Score=248.67 Aligned_cols=284 Identities=18% Similarity=0.178 Sum_probs=238.1
Q ss_pred hhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 166 SRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 166 ~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.+.++.||+.|+ +++..+..|+..|.+++.+++.++..|.+ .|+|+.|+.+|... .+.++++.|+++|.||+.+
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~-~G~i~~Lv~lL~~~---~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR-QNGIREAVSLLRRT---GNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHHHTTC---CCHHHHHHHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhhC---CCHHHHHHHHHHHHHHhcC
Confidence 3468999999996 56788999999999999988999999999 99999999999832 3889999999999999999
Q ss_pred chhhhhhhcCCCCHHHHHHHHh--------cC--------CHHHHHHHHHHHHHhhccCcchhHhhcc-CchHHHHHHhh
Q 012677 245 DENKRLVAENPLAIPLLIDSVR--------TG--------TIETRRNAAAALFSLSALDSNKLIIGKL-GAMTPLIDLLE 307 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~--------~~--------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~ 307 (458)
++++..+++ | ++|.|+.+|. ++ +.++...|+++|.||+.+++++..+.+. |+|++|+.+|.
T Consensus 118 ~~~~~~i~~-g-~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 118 DELKEELIA-D-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp SSTHHHHHH-H-HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHH
T ss_pred HHhHHHHHh-c-cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHH
Confidence 888988888 4 9999999993 22 3566679999999999988889999997 99999998886
Q ss_pred cC------------------------------------------------------------------------------
Q 012677 308 EG------------------------------------------------------------------------------ 309 (458)
Q Consensus 308 ~~------------------------------------------------------------------------------ 309 (458)
++
T Consensus 196 ~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (457)
T 1xm9_A 196 NCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG 275 (457)
T ss_dssp HHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCG
T ss_pred hhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchH
Confidence 41
Q ss_pred ---------------------ChHHHHHHHHHHHHhcccccc------hhHHHhhCcHHHHHHHhccC--CcHHHHHHHH
Q 012677 310 ---------------------HPLAMKDVASAIFSLCILLEN------KRRAVHAGAVRVILRKIMEN--SLVDELLAIL 360 (458)
Q Consensus 310 ---------------------~~~~~~~a~~aL~~L~~~~~~------~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L 360 (458)
++.+++.|+++|.||+..... +..+.+.|++|.|+++|.++ .++..|+++|
T Consensus 276 ~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL 355 (457)
T 1xm9_A 276 SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLL 355 (457)
T ss_dssp GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHH
Confidence 234566788999999875532 22234589999999999987 6889999999
Q ss_pred HHhcCCHHHHHHHHhcCCHHHHHHHHhhcCC-----hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-C
Q 012677 361 AMLSSHQDAIEEIGELGAIPCLLRIIRESTC-----ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG-T 434 (458)
Q Consensus 361 ~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~ 434 (458)
.+|+.+++++..|. .|+++.|+++|..++. +++...++++|.+|..+++.. ...+.+.|+++.|+.|+.++ +
T Consensus 356 ~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~-~~~i~~~g~l~~L~~L~~~~~~ 433 (457)
T 1xm9_A 356 SNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSAS 433 (457)
T ss_dssp HHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTC
T ss_pred HHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHHcCCCc
Confidence 99999988887665 5789999999996532 368889999999999877654 45566789999999999999 9
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhc
Q 012677 435 SRAKRKANGILERLNKAALIVHT 457 (458)
Q Consensus 435 ~~~~~~A~~~L~~l~~~~~~~~~ 457 (458)
++++++|.++|.++..+.+.+.+
T Consensus 434 ~~i~~~A~~~L~~~~~~~~l~~~ 456 (457)
T 1xm9_A 434 PKAAEAARLLLSDMWSSKELQGV 456 (457)
T ss_dssp HHHHHHHHHHHHTTSSSTTCSSC
T ss_pred HHHHHHHHHHHHHHHcchhhhcc
Confidence 99999999999999877766543
No 8
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=1.3e-28 Score=239.60 Aligned_cols=242 Identities=18% Similarity=0.195 Sum_probs=211.6
Q ss_pred hhhhhhhhHHhhcC------------CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHH
Q 012677 166 SRSHLNSLLEKMSS------------SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLED 233 (458)
Q Consensus 166 ~~~~l~~Lv~~l~~------------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~ 233 (458)
+.+.++.|+..|.. ++..|..|+..|.+++..++.++..+....|+||.|+.+|.++ +.++++.
T Consensus 71 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~----~~~v~~~ 146 (354)
T 3nmw_A 71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE----SEDLQQV 146 (354)
T ss_dssp HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS----CHHHHHH
T ss_pred HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC----CHHHHHH
Confidence 34678888888831 2567899999999999988888888865246699999999875 8899999
Q ss_pred HHHHHHhcccC--chhhhhhhcCCCCHHHHHHHH-hcCCHHHHHHHHHHHHHhhc-cCcchhHhh-ccCchHHHHHHhhc
Q 012677 234 LITTILNLSIH--DENKRLVAENPLAIPLLIDSV-RTGTIETRRNAAAALFSLSA-LDSNKLIIG-KLGAMTPLIDLLEE 308 (458)
Q Consensus 234 a~~~L~~ls~~--~~~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~-~~g~i~~Lv~lL~~ 308 (458)
|+++|.||+.+ +++|..+++.| ++|.|+.+| ++++.++++.|+++|.||+. .++++..|+ ..|+|+.|+.+|.+
T Consensus 147 A~~aL~nLs~~~~~~~k~~i~~~G-~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~ 225 (354)
T 3nmw_A 147 IASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 225 (354)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCHHHHHHHHHCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhcc
Confidence 99999999985 46888888874 999999975 66789999999999999998 667888888 69999999999987
Q ss_pred CCh----HHHHHHHHHHHHhcc----cccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcC
Q 012677 309 GHP----LAMKDVASAIFSLCI----LLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELG 377 (458)
Q Consensus 309 ~~~----~~~~~a~~aL~~L~~----~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g 377 (458)
+++ ++++.|+++|+||+. .++++..+++.|+++.|+++|.++ .+++.|+++|.+|+. +++++..+++.|
T Consensus 226 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G 305 (354)
T 3nmw_A 226 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305 (354)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT
T ss_pred CCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCC
Confidence 754 589999999999996 677898999999999999999987 578999999999995 899999999999
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhH
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRT 413 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 413 (458)
+|+.|+++|++. ++.+++.|+++|.||+.+.+.++
T Consensus 306 ~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 306 AVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999965 59999999999999999887654
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.96 E-value=7.6e-28 Score=247.45 Aligned_cols=278 Identities=14% Similarity=0.135 Sum_probs=242.5
Q ss_pred hhhhhhhHHhhc--CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 167 RSHLNSLLEKMS--SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 167 ~~~l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.+.++.||+.|. +++..|.+|+++|.+++..++.++..+++ .|+||.|+.+|+++ +.++++.|+++|.||+.+
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~-~GaIp~Lv~lL~s~----~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLASP----HAHISEQAVWALGNIAGD 173 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhC
Confidence 468999999995 34678999999999999999999999999 99999999999985 899999999999999987
Q ss_pred ch-hhhhhhcCCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhhccCcchhHhh-ccCchHHHHHHhhcCChHHHHHH
Q 012677 245 DE-NKRLVAENPLAIPLLIDSVRTGT-----IETRRNAAAALFSLSALDSNKLIIG-KLGAMTPLIDLLEEGHPLAMKDV 317 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a 317 (458)
.+ .+..+... |+++.|+.+|..++ ...+..++++|.+++.+......+. ..|+++.|+.+|.+++++++..|
T Consensus 174 ~~~~r~~v~~~-G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A 252 (510)
T 3ul1_B 174 GSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252 (510)
T ss_dssp CHHHHHHHHHT-TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CHHHHHHHHHc-CChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence 65 56677776 59999999998653 4678899999999998876655444 37899999999999999999999
Q ss_pred HHHHHHhcccccchh-HHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChh
Q 012677 318 ASAIFSLCILLENKR-RAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCER 393 (458)
Q Consensus 318 ~~aL~~L~~~~~~~~-~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 393 (458)
+++|.+|+...+++. .+++.|+++.|+++|.++ .++..++.+|.+|+. ++..+..+++.|+++.|+.+|.++ ++.
T Consensus 253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~ 331 (510)
T 3ul1_B 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTN 331 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHH
T ss_pred HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHH
Confidence 999999998776554 467889999999999877 578899999999987 778889999999999999999965 499
Q ss_pred HHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 394 NKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 394 ~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
++..|+++|.||+.+++... ..+.+.|+++.|+.++.+++..+++.|+++|.+++...
T Consensus 332 v~~~A~~aL~nl~a~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 332 IQKEATWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCcHHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC
Confidence 99999999999999887654 55556899999999999999999999999999998643
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=3.5e-28 Score=256.86 Aligned_cols=275 Identities=16% Similarity=0.149 Sum_probs=234.5
Q ss_pred hhhhhHHhhc-C--CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 169 HLNSLLEKMS-S--SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 169 ~l~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.++.+++.|+ + +.+++..|++.|..|+.+ +..+..++...|+++.|+.+|++. +..++..|+++|.||+.+.
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~----d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGG----NQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTT----CGGGHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCC----ChHHHHHHHHHHHHHcCCc
Confidence 4566777774 3 678999999999999985 666666664379999999999874 8899999999999999854
Q ss_pred h------------------------------hh---hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhH
Q 012677 246 E------------------------------NK---RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLI 292 (458)
Q Consensus 246 ~------------------------------~~---~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 292 (458)
+ ++ ..+++. |++|.|+.+|+++++.+++.|+++|.||+.+++++..
T Consensus 453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea-GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~ 531 (810)
T 3now_A 453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE-GITTALCALAKTESHNSQELIARVLNAVCGLKELRGK 531 (810)
T ss_dssp CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT-THHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC-cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2 12 566776 5999999999999999999999999999998889999
Q ss_pred hhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHH---HhhCcHHHHHHHhccC-C-c-HHHHHHHHHHhcCC
Q 012677 293 IGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRA---VHAGAVRVILRKIMEN-S-L-VDELLAILAMLSSH 366 (458)
Q Consensus 293 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i---~~~g~v~~Lv~ll~~~-~-~-~~~a~~~L~~La~~ 366 (458)
+++.|+|++|+.+|.++++..++.|+++|.+|+.+.+....+ ...|++++|+++|.++ . . +..|+.+|.||+..
T Consensus 532 Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 532 VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611 (810)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999765543322 1247999999999865 3 2 45799999999995
Q ss_pred -HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHH
Q 012677 367 -QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGIL 445 (458)
Q Consensus 367 -~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L 445 (458)
++++..++++|+++.|+.+|.+. ++.+++.|+++|+||+.+++ ....++...|.+++|+.|+.+.+..+++.|+++|
T Consensus 612 ~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~AL 689 (810)
T 3now_A 612 NESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGAL 689 (810)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 78999999999999999999965 59999999999999999765 3445554478999999999999999999999999
Q ss_pred HHHHhh
Q 012677 446 ERLNKA 451 (458)
Q Consensus 446 ~~l~~~ 451 (458)
++|+..
T Consensus 690 anLt~~ 695 (810)
T 3now_A 690 AIITSV 695 (810)
T ss_dssp HHHHHH
T ss_pred HHHhCC
Confidence 999974
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=2.9e-27 Score=244.34 Aligned_cols=279 Identities=14% Similarity=0.134 Sum_probs=243.8
Q ss_pred hhhhhhhhHHhhc--CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc
Q 012677 166 SRSHLNSLLEKMS--SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI 243 (458)
Q Consensus 166 ~~~~l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~ 243 (458)
+.+.++.||+.|. +++..|.+|++.|.+++..++..+..+.+ .|+||.|+.+|.++ +..+++.|+++|.||+.
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~-~Gaip~Lv~LL~s~----~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLASP----HAHISEQAVWALGNIAG 191 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhc
Confidence 3468999999995 34778999999999999998889999999 99999999999985 89999999999999998
Q ss_pred Cc-hhhhhhhcCCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhhccCcchhHhh-ccCchHHHHHHhhcCChHHHHH
Q 012677 244 HD-ENKRLVAENPLAIPLLIDSVRTGT-----IETRRNAAAALFSLSALDSNKLIIG-KLGAMTPLIDLLEEGHPLAMKD 316 (458)
Q Consensus 244 ~~-~~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~ 316 (458)
+. +++..+... |+++.|+.+|..++ ......++++|.+++.+......+. ..|++|.|+.+|.+++++++..
T Consensus 192 ~~~~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~ 270 (529)
T 3tpo_A 192 AGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD 270 (529)
T ss_dssp TCHHHHHHHHHT-TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred cCHHHHHHHHHc-CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHH
Confidence 75 467777777 49999999997653 5678899999999998876654444 4789999999999999999999
Q ss_pred HHHHHHHhcccccch-hHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCCh
Q 012677 317 VASAIFSLCILLENK-RRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCE 392 (458)
Q Consensus 317 a~~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 392 (458)
|+++|.+|+...+++ ..+++.|+++.|+.+|.++ .++..++.+|.+|+. ++..+..+++.|+++.|+.+|.++ ++
T Consensus 271 a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~ 349 (529)
T 3tpo_A 271 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KT 349 (529)
T ss_dssp HHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SH
T ss_pred HHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CH
Confidence 999999999877654 4567889999999999877 578899999999987 778899999999999999999965 49
Q ss_pred hHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 393 RNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 393 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
.++..|+++|.||+.+++... ..+.+.|+++.|+.++.+++..++..|+++|.+++...
T Consensus 350 ~i~~~a~~aL~nl~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~ 408 (529)
T 3tpo_A 350 NIQKEATWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGG 408 (529)
T ss_dssp HHHHHHHHHHHHHHTSCHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccHHHH-HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999887654 55556899999999999999999999999999998653
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=8e-28 Score=246.19 Aligned_cols=282 Identities=19% Similarity=0.178 Sum_probs=230.0
Q ss_pred hhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhh-CchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 167 RSHLNSLLEKMS-SSLSDQKEAAKELRLLTKR-MPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 167 ~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.++|+.||+.|. ++...|..|+.+|.+++.. ++.++..|.+ .|+|+.|+.+|+++ .+.++++.|+.+|.||+.+
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~-~GaIp~LV~LL~s~---~~~~~~e~aa~aL~nLS~~ 164 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN-CDGVPALVRLLRKA---RDMDLTEVITGTLWNLSSH 164 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH-TTHHHHHHHHHHHC---CSHHHHHHHHHHHHHHTTS
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH-cCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHhCC
Confidence 468999999995 5688999999999999985 6899999999 99999999999863 3678999999999999999
Q ss_pred chhhhhhhcCCCCHHHHHHHHh------------------cCCHHHHHHHHHHHHHhhccCcc-hhHhhc-cCchHHHHH
Q 012677 245 DENKRLVAENPLAIPLLIDSVR------------------TGTIETRRNAAAALFSLSALDSN-KLIIGK-LGAMTPLID 304 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~------------------~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~-~g~i~~Lv~ 304 (458)
++++..|+. + ++|.|+.+|. ..+.+++++|+++|.||+.++++ +..|++ .|+|+.||.
T Consensus 165 ~~~k~~I~~-~-alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~ 242 (584)
T 3l6x_A 165 DSIKMEIVD-H-ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIF 242 (584)
T ss_dssp GGGHHHHHH-H-THHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHH
T ss_pred chhhHHHHh-c-cHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHH
Confidence 999999996 4 6999999872 12579999999999999987754 777777 566667777
Q ss_pred Hhhc--------------------------------------------------------------------------CC
Q 012677 305 LLEE--------------------------------------------------------------------------GH 310 (458)
Q Consensus 305 lL~~--------------------------------------------------------------------------~~ 310 (458)
+|++ .+
T Consensus 243 ~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~ 322 (584)
T 3l6x_A 243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKT 322 (584)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred HHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCC
Confidence 6542 13
Q ss_pred hHHHHHHHHHHHHhcccc-----cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHH
Q 012677 311 PLAMKDVASAIFSLCILL-----ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLL 383 (458)
Q Consensus 311 ~~~~~~a~~aL~~L~~~~-----~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv 383 (458)
+.++++|+++|.||+... .++..+.+.|+++.|++||.++ .+++.++++|.||+.++.++..| ..|+++.||
T Consensus 323 ~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV 401 (584)
T 3l6x_A 323 PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLV 401 (584)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHH
Confidence 445556666666665543 1223344579999999999877 68899999999999988888766 778999999
Q ss_pred HHHhhcC-------ChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC--CHHHHHHHHHHHHHHHhhHhh
Q 012677 384 RIIREST-------CERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG--TSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 384 ~ll~~~~-------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~ 454 (458)
.+|.++. +..+...|+++|.||+..++... ..+.+.|+++.|+.|+.++ ++.+++.|+++|.+|..+.+.
T Consensus 402 ~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~-~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~el 480 (584)
T 3l6x_A 402 KNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA-KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKEL 480 (584)
T ss_dssp HTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH-HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHH
T ss_pred HHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHH
Confidence 9998652 36788999999999998877654 5555699999999999886 889999999999999987766
Q ss_pred hh
Q 012677 455 VH 456 (458)
Q Consensus 455 ~~ 456 (458)
+.
T Consensus 481 r~ 482 (584)
T 3l6x_A 481 RK 482 (584)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=5.7e-27 Score=242.13 Aligned_cols=287 Identities=16% Similarity=0.159 Sum_probs=248.2
Q ss_pred hhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCC-CChhHHHHHHHHHHhccc
Q 012677 166 SRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRAD-TDPGLLEDLITTILNLSI 243 (458)
Q Consensus 166 ~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~~~~a~~~L~~ls~ 243 (458)
+.++++.|++.|. ++...+..|+++|.+++.+++.+|..+.+ .|+++.|+.+|...... .....+..++++|.+++.
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHH-cCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 3468999999985 66889999999999999999999999999 99999999999865211 123567899999999998
Q ss_pred CchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 244 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
+......+....+++|.|+.+|.+++.+++..|+++|.+|+...++ ...+...|+++.|+.+|.+++..++..|+.+|.
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 8776555544446999999999999999999999999999987755 556778999999999999999999999999999
Q ss_pred Hhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 323 SLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 323 ~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
||+...+ .+..+++.|+++.|+.+|.++ .++..|+++|.+|+. +++.+..+.+.|+++.|+.+|.++ +..++..|
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A 397 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAA 397 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHH
Confidence 9987654 667789999999999999977 678999999999988 788889999999999999999975 49999999
Q ss_pred HHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 399 AAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 399 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+++|.|++.+........+.+.|++++|+.|+.+.++.+...+..+|.++.+..+.
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~ 453 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 453 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence 99999999865544445555699999999999999999999999999999876643
No 14
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=8.1e-27 Score=239.77 Aligned_cols=287 Identities=16% Similarity=0.161 Sum_probs=247.7
Q ss_pred hhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCC-CChhHHHHHHHHHHhccc
Q 012677 166 SRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRAD-TDPGLLEDLITTILNLSI 243 (458)
Q Consensus 166 ~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~~~~a~~~L~~ls~ 243 (458)
+.++++.|++.|+ ++..++..|+++|.+++.+++.+|..+.+ .|+++.|+.+|...... .....+..++++|.|++.
T Consensus 141 ~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 3468999999995 66889999999999999999999999999 99999999999875211 123567889999999998
Q ss_pred CchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 244 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
+......+....+++|.|+.+|.+++.+++..|+++|.+|+...++ ...+.+.|+++.|+.+|.+++..++..++.+|.
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~ 299 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 299 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence 8766555554446999999999999999999999999999987755 556677999999999999999999999999999
Q ss_pred Hhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 323 SLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 323 ~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
||+...+ .+..+++.|+++.|+.+|.++ .+++.|+++|.+|+. +++.+..+.+.|+++.|+.++.++ +..++..|
T Consensus 300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A 378 (510)
T 3ul1_B 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEA 378 (510)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHH
T ss_pred HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHH
Confidence 9987665 566789999999999999877 688999999999988 788899999999999999999965 49999999
Q ss_pred HHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 399 AAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 399 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+++|.|++.+........+.+.|++++|+.|+.+.++.+...+..+|.++.+..+.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~ 434 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 434 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence 99999999876544445556689999999999999999999999999999876653
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2.4e-26 Score=213.46 Aligned_cols=239 Identities=18% Similarity=0.267 Sum_probs=215.6
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc-C
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL-D 287 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~ 287 (458)
|+++.|+.+|.+. +.+++..|+++|.+++.+.+ ++..+.+. |+++.|+.+|++++.+++..|+++|.+|+.. +
T Consensus 2 ~~i~~L~~~L~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 2 NDVEKLVKLLTST----DSETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPD 76 (252)
T ss_dssp CHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred CcHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 6789999999985 78999999999999998776 88888887 4999999999999999999999999999987 6
Q ss_pred cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc-cccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhc
Q 012677 288 SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI-LLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLS 364 (458)
Q Consensus 288 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La 364 (458)
+++..+.+.|+++.|+.+|+++++.++..|+++|.+|+. .++++..+++.|+++.|+++|.++ .++..++.+|.+|+
T Consensus 77 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 77 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999994 567888899999999999999977 58899999999999
Q ss_pred C-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHH
Q 012677 365 S-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANG 443 (458)
Q Consensus 365 ~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~ 443 (458)
. ++..+..+.+.|+++.|+.++.++ ++.++..|+++|.+|+.+++... ..+.+.|+++.|+.++.++++.+++.|.+
T Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 234 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAI-KAIVDAGGVEVLQKLLTSTDSEVQKEAQR 234 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHH-HHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHCCCcHHHHHHHHH
Confidence 8 677788999999999999999965 59999999999999998766544 45556899999999999999999999999
Q ss_pred HHHHHHhhHhhh
Q 012677 444 ILERLNKAALIV 455 (458)
Q Consensus 444 ~L~~l~~~~~~~ 455 (458)
+|.+|+...+..
T Consensus 235 ~L~~l~~~~~~~ 246 (252)
T 4hxt_A 235 ALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHTCBCC
T ss_pred HHHHHHcCCCcc
Confidence 999999876654
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=2.1e-25 Score=230.34 Aligned_cols=278 Identities=16% Similarity=0.183 Sum_probs=245.5
Q ss_pred hhhhhhhHHhhc-CC-cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 167 RSHLNSLLEKMS-SS-LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 167 ~~~l~~Lv~~l~-~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.+.++.|++.|. ++ +..|..|+..|.+++..++.++..+.+ .|+++.|+.+|.+. +..+++.|+++|.+++.+
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~~----~~~v~~~a~~aL~~l~~~ 190 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVID-HGAVPIFVKLLGSS----SDDVREQAVWALGNVAGD 190 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-CCcHHHHHHHhcCC----CHHHHHHHHHHHHHHhCC
Confidence 357899999996 34 788999999999999988999999999 89999999999975 889999999999999977
Q ss_pred ch-hhhhhhcCCCCHHHHHHHH-hcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 245 DE-NKRLVAENPLAIPLLIDSV-RTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
.+ ++..+... |+++.|+.+| .+.+..++..++++|.+|+............|+++.|+.+|.++++.++..|+++|.
T Consensus 191 ~~~~~~~i~~~-g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~ 269 (528)
T 4b8j_A 191 SPKCRDLVLAN-GALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALS 269 (528)
T ss_dssp CHHHHHHHHHT-TCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ChhhHHHHHHC-CcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 54 57777776 5999999999 667899999999999999988666666666899999999999999999999999999
Q ss_pred Hhcccccch-hHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 323 SLCILLENK-RRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 323 ~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
+|+...+.+ ..+++.|+++.|+.+|.++ .++..|+.+|.+|+. ++.....+++.|+++.|+.+|.++.++.++..|
T Consensus 270 ~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A 349 (528)
T 4b8j_A 270 YLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEA 349 (528)
T ss_dssp HHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHH
Confidence 999877655 4577889999999999977 588999999999998 778888999999999999999966359999999
Q ss_pred HHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 399 AAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 399 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
+++|.||+.+.+.....+ ...|+++.|+.++.++++.++..|+++|.+++..
T Consensus 350 ~~~L~nl~~~~~~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 350 CWTISNITAGNKDQIQAV-INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHTSCHHHHHHH-HHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH-HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999999998766544344 4579999999999999999999999999999976
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=4.6e-25 Score=227.82 Aligned_cols=277 Identities=18% Similarity=0.194 Sum_probs=240.0
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCc-hhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMP-LFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH- 244 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~- 244 (458)
..++.+++.|. +++..|..|+..|..++.... .....+.+ .|+++.|+.+|.+. .++.++..|+++|.+++.+
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~-~g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ-SGVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHH-TTCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHH-CCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCC
Confidence 46889999995 668889999999999876554 56677777 89999999999875 2389999999999999987
Q ss_pred chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHh-hcCChHHHHHHHHHHH
Q 012677 245 DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLL-EEGHPLAMKDVASAIF 322 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~ 322 (458)
++++..++.. |++|.|+.+|.+++..++..|+++|.+|+.+. .++..+.+.|++++|+.+| .+.++.++..|+++|.
T Consensus 150 ~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 150 SENTKVVIDH-GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp HHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 5577778877 59999999999999999999999999999765 4588888899999999999 5668999999999999
Q ss_pred HhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHH
Q 012677 323 SLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKENCA 399 (458)
Q Consensus 323 ~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 399 (458)
+|+...+.....+..|+++.|+++|.++ .++..++++|.+|+.. +.....+++.|+++.|+.+|.++ ++.++..|+
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~ 307 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPAL 307 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHH
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHH
Confidence 9999876666667789999999999876 5889999999999985 55567888999999999999965 499999999
Q ss_pred HHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-CHHHHHHHHHHHHHHHhh
Q 012677 400 AILYNICFTDRTRTREIMEEENANGTLSRLAENG-TSRAKRKANGILERLNKA 451 (458)
Q Consensus 400 ~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~A~~~L~~l~~~ 451 (458)
++|.+|+.+.+... ..+.+.|+++.|+.++.++ ++.++..|+++|.+|+..
T Consensus 308 ~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 308 RTVGNIVTGDDAQT-QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HHHHHHTTSCHHHH-HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHH-HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 99999999776544 4455689999999999998 999999999999999864
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=2e-25 Score=207.30 Aligned_cols=236 Identities=19% Similarity=0.264 Sum_probs=214.1
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-ch
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DE 246 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~ 246 (458)
.++.|++.|. ++++.|..|+..|.+++..++.++..+.+ .|+++.|+.+|++. +..++..|+++|.+++.+ ++
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVD-AGGVEVLVKLLTST----DSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcCChH
Confidence 5788999995 56788999999999999988889999999 89999999999985 789999999999999998 66
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhh-ccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLS-ALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
++..+.+. |+++.|+.+|++++.+++..|+++|.+|+ .+++++..+.+.|+++.|+.+|+++++.++..|+++|.+|+
T Consensus 78 ~~~~~~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 78 AIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHT-THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 78888887 49999999999999999999999999999 45677888999999999999999999999999999999999
Q ss_pred cccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 326 ILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 326 ~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
...+ .+..+++.|+++.|+++|.++ .++..++.+|.+|+. +++.+..+.+.|+++.|++++.++ ++.+++.|+++
T Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~ 235 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRA 235 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHH
Confidence 8665 456788999999999999977 688999999999998 788899999999999999999965 59999999999
Q ss_pred HHHHhccCch
Q 012677 402 LYNICFTDRT 411 (458)
Q Consensus 402 L~~L~~~~~~ 411 (458)
|.+|+...+.
T Consensus 236 L~~l~~~~~~ 245 (252)
T 4hxt_A 236 LENIKSGGWL 245 (252)
T ss_dssp HHHHHHTCBC
T ss_pred HHHHHcCCCc
Confidence 9999987654
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=8.5e-26 Score=210.31 Aligned_cols=236 Identities=18% Similarity=0.257 Sum_probs=210.2
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhc-ccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc-c
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNL-SIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA-L 286 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~l-s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~-~ 286 (458)
....+.++.+|.+. +.+++..|+++|.++ +.+++++..+++. |++|.|+.+|++++.+++..|+++|.+|+. +
T Consensus 11 ~~~~~~~~~~L~s~----~~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (252)
T 4db8_A 11 GSELPQMTQQLNSD----DMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGG 85 (252)
T ss_dssp TCSHHHHHHHHHSS----CSSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 45688999999885 889999999999764 4456678888887 499999999999999999999999999997 5
Q ss_pred CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccch-hHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHh
Q 012677 287 DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENK-RRAVHAGAVRVILRKIMEN--SLVDELLAILAML 363 (458)
Q Consensus 287 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~L 363 (458)
++++..+.+.|+++.|+.+|+++++.++..|+++|.+|+...+++ ..+++.|+++.|+++|.++ .++..++++|.+|
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999988 7789999999999999877 5789999999999
Q ss_pred cC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHH
Q 012677 364 SS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKAN 442 (458)
Q Consensus 364 a~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~ 442 (458)
+. +++.+..+.+.|+++.|+++|.++ ++.++..|+++|.+|+..++... ..+.+.|+++.|+.++.++++.+++.|+
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 98 678888899999999999999965 59999999999999998776554 4455689999999999999999999999
Q ss_pred HHHHHHHhh
Q 012677 443 GILERLNKA 451 (458)
Q Consensus 443 ~~L~~l~~~ 451 (458)
++|.+|+.+
T Consensus 244 ~~L~~l~~~ 252 (252)
T 4db8_A 244 EALEKLQSH 252 (252)
T ss_dssp HHHHTTC--
T ss_pred HHHHHHhcC
Confidence 999998753
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=9.9e-26 Score=209.86 Aligned_cols=232 Identities=17% Similarity=0.236 Sum_probs=208.1
Q ss_pred hhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-ch
Q 012677 169 HLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DE 246 (458)
Q Consensus 169 ~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~ 246 (458)
.++.+++.| +++++.|..|+..|.++...++.++..+.+ .|+++.|+.+|++. +..++..|+++|.+++.+ ++
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~-~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLSSP----NEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHGGGCS----CHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHH-cCcHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHH
Confidence 577888888 467889999999997766656778888888 89999999999985 789999999999999984 56
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcch-hHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK-LIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
++..+.+. |++|.|+.+|++++..++..|+++|.+|+.+++++ ..+.+.|+++.|+.+|+++++.++..|+++|.+|+
T Consensus 88 ~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 88 QIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 78888887 59999999999999999999999999999998887 88889999999999999999999999999999999
Q ss_pred ccc-cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 326 ILL-ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 326 ~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
... +++..+++.|+++.|+++|.++ .++..|+.+|.+|+. +++.+..+.+.|+++.|++++.+. ++.+++.|+++
T Consensus 167 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~ 245 (252)
T 4db8_A 167 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEA 245 (252)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHH
T ss_pred cCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHH
Confidence 865 4666788899999999999877 578999999999996 788999999999999999999965 59999999999
Q ss_pred HHHHhc
Q 012677 402 LYNICF 407 (458)
Q Consensus 402 L~~L~~ 407 (458)
|.+|+.
T Consensus 246 L~~l~~ 251 (252)
T 4db8_A 246 LEKLQS 251 (252)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 999985
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.93 E-value=2.5e-24 Score=222.51 Aligned_cols=277 Identities=16% Similarity=0.133 Sum_probs=244.2
Q ss_pred hhhhhhhHHhhcC--CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 167 RSHLNSLLEKMSS--SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 167 ~~~l~~Lv~~l~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.+.++.|++.|.+ ++..|..|+..|.+++..++..+..+.+ .|+++.|+.+|.+. +..+++.|+++|.+++.+
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~~~----~~~vr~~A~~aL~~l~~~ 203 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLYTG----SVEVKEQAIWALGNVAGD 203 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCC
Confidence 3578999999963 5788999999999999988888888888 89999999999874 889999999999999987
Q ss_pred c-hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 245 D-ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 245 ~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
. .++..+... |+++.|+.+|.+++..++..|+++|.+|+... +........|+++.|+.+|.++++.++..|+++|.
T Consensus 204 ~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~ 282 (530)
T 1wa5_B 204 STDYRDYVLQC-NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 282 (530)
T ss_dssp CHHHHHHHHHT-TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CccchHHHHHc-CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5 467777776 59999999999999999999999999999876 55556666899999999999999999999999999
Q ss_pred Hhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 323 SLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 323 ~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
+|+...+ ....+++.|+++.|+.+|.++ .++..|+.+|.+|+. ++.....+.+.|+++.|+.+|.++ +..++..|
T Consensus 283 ~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A 361 (530)
T 1wa5_B 283 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEA 361 (530)
T ss_dssp HHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred HHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHH
Confidence 9997654 566688889999999999877 578899999999997 677888889999999999999976 59999999
Q ss_pred HHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 399 AAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 399 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
+++|.+|+.+.+.....++ +.|+++.|+.++.++++.++..|+++|.+++..
T Consensus 362 ~~aL~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 362 CWTISNITAGNTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999987765544444 589999999999999999999999999999875
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.93 E-value=1.1e-23 Score=217.63 Aligned_cols=279 Identities=15% Similarity=0.150 Sum_probs=243.1
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc-
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD- 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~- 245 (458)
+.++.|++.|. ++...+..|+..|.+++..++.++..+.. .|+++.|+.+|.+. +..++..|+++|.+|+.+.
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSN----KPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSC----CHHHHHHHHHHHHHHHCCSS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhccC----CHHHHHHHHHHHHHHhCCCC
Confidence 57888999885 67889999999999999988889999988 89999999999874 8899999999999999876
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+........ +++|.|+.+|.+++..++..|+++|.+|+... +....+.+.|+++.|+.+|.++++.++..|+++|.+|
T Consensus 248 ~~~~~~~~~-~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 248 PQPDWSVVS-QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SCCCHHHHG-GGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHH-hHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 444444454 59999999999999999999999999999765 4467777889999999999999999999999999999
Q ss_pred ccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHH
Q 012677 325 CILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAA 400 (458)
Q Consensus 325 ~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 400 (458)
+...+ ....+++.|+++.|+.+|.++ .++..|+++|.+|+. +++....+++.|+++.|+.+|.++ +..++..|++
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~ 405 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACW 405 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHH
Confidence 97654 555678889999999999987 578999999999997 778888899999999999999965 4999999999
Q ss_pred HHHHHhccCc---hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 401 ILYNICFTDR---TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 401 ~L~~L~~~~~---~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+|.+|+.... .....++ +.|+++.|+.++.+.++.++..|.++|.++....+.
T Consensus 406 aL~~l~~~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLV-SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHH-HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 9999998643 3333444 589999999999999999999999999999987654
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=1.6e-23 Score=211.40 Aligned_cols=279 Identities=15% Similarity=0.116 Sum_probs=241.6
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc-
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD- 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~- 245 (458)
+.++.|++.|. +++..|..|+..|.+++..++.++..+.+ .|+++.|+.+|.+. .+..++..|+++|.+++.+.
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~---~~~~v~~~a~~~L~~l~~~~~ 182 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD-CNILPPLLQLFSKQ---NRLTMTRNAVWALSNLCRGKS 182 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTTSC---CCHHHHHHHHHHHHHHHCCSS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcCC---CCHHHHHHHHHHHHHHhCCCC
Confidence 47888999985 56888999999999999988889999988 89999999999852 37899999999999999765
Q ss_pred h-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 246 E-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 246 ~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
+ .+..+. . +++|.|+.++.+++..++..++++|.+|+... ++...+...|+++.|+.+|.++++.++..|+++|.+
T Consensus 183 ~~~~~~~~-~-~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 183 PPPEFAKV-S-PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SCCCGGGT-G-GGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHH-H-HHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 3 333333 3 59999999999999999999999999999865 456777789999999999999999999999999999
Q ss_pred hcccccc-hhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHH
Q 012677 324 LCILLEN-KRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCA 399 (458)
Q Consensus 324 L~~~~~~-~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 399 (458)
|+...+. ...+++.|+++.|+++|.++ .++..|+++|.+|+. +++....+++.|+++.|+.+|.++ ++.++..|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHH
Confidence 9987664 44578889999999999877 578999999999997 788888899999999999999976 499999999
Q ss_pred HHHHHHhcc-CchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 400 AILYNICFT-DRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 400 ~~L~~L~~~-~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
++|.+|+.+ .+.....++ +.|+++.|+.++.++++.+++.|.++|.++....+.
T Consensus 340 ~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Confidence 999999986 444443444 579999999999999999999999999999987653
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=2.3e-23 Score=210.24 Aligned_cols=275 Identities=17% Similarity=0.177 Sum_probs=237.7
Q ss_pred hhhhhhHHhhc-C-CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMS-S-SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+.++.|++.|. + ++..|..|+..|.+++..++.....+.+ .|+++.|+.+|++. ++.+++.|+++|.+++.+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~----~~~vr~~a~~~L~~l~~~~ 138 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLSSE----FEDVQEQAVWALGNIAGDS 138 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh-CCCHHHHHHHHcCC----CHHHHHHHHHHHHHHccCC
Confidence 47888999885 4 5788999999999999877777777887 89999999999975 8899999999999999876
Q ss_pred h-hhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccC-c-chhHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 246 E-NKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALD-S-NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 246 ~-~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~-~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
+ .+..+... |+++.|+.+|.+ .+..++..|+++|.+|+... . ....+. .|+++.|+.++.++++.++..++++|
T Consensus 139 ~~~~~~~~~~-~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L 216 (450)
T 2jdq_A 139 TMCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWAL 216 (450)
T ss_dssp HHHHHHHHHT-TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4 66677776 599999999996 68999999999999999765 2 233333 88999999999999999999999999
Q ss_pred HHhcccc-cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhH
Q 012677 322 FSLCILL-ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 322 ~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 397 (458)
.+|+... +++..+++.|+++.|+++|.++ .++..|+.+|.+|+. .+..++.+.+.|+++.|+.+|.++ ++.++..
T Consensus 217 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~ 295 (450)
T 2jdq_A 217 SYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKE 295 (450)
T ss_dssp HHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHH
T ss_pred HHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHH
Confidence 9999865 4666678889999999999876 578999999999998 566777789999999999999965 5999999
Q ss_pred HHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 398 CAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 398 a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
|+++|.+|+.+.+.....++ +.|+++.|+.++.++++.++..|+++|.+++..
T Consensus 296 a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 296 ACWTISNITAGNRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999999987765544444 479999999999999999999999999999864
No 25
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.92 E-value=5.7e-25 Score=199.97 Aligned_cols=194 Identities=19% Similarity=0.264 Sum_probs=170.1
Q ss_pred CChHHHhhccCCCCCCCCh--hHHHHHHHHHHhcccC-chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc-
Q 012677 210 DAIPLLLSPLSPGRADTDP--GLLEDLITTILNLSIH-DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA- 285 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~--~~~~~a~~~L~~ls~~-~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~- 285 (458)
-.++.|+.+|+++ +. .++..|+..|.+++.+ ++++..+.+.| ++|.||.+|++++.++++.|+++|.||+.
T Consensus 8 ~~i~~lV~lL~s~----~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G-~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 8 MTLERAVSMLEAD----HMLPSRISAAATFIQHECFQKSEARKRVNQLR-GILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp CCHHHHHHTCCSS----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTT-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHhCCC----CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 4689999999985 55 8889999999999964 56888898885 89999999999999999999999999998
Q ss_pred cCcchhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhc----------------
Q 012677 286 LDSNKLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIM---------------- 348 (458)
Q Consensus 286 ~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~---------------- 348 (458)
+++|+..|++.|+||+|+.+|++ ++.+++++|+.+|+||+..++++..+++. ++++|++++.
T Consensus 83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccc
Confidence 46899999999999999999985 68999999999999999999999999874 7999998763
Q ss_pred --cCCcHHHHHHHHHHhcC-CHHHHHHHHhc-CCHHHHHHHHhhc-----CChhHHhHHHHHHHHHhccC
Q 012677 349 --ENSLVDELLAILAMLSS-HQDAIEEIGEL-GAIPCLLRIIRES-----TCERNKENCAAILYNICFTD 409 (458)
Q Consensus 349 --~~~~~~~a~~~L~~La~-~~~~~~~i~~~-g~i~~Lv~ll~~~-----~~~~~~~~a~~~L~~L~~~~ 409 (458)
+..+++.|..+|+||+. ++++|+.+.+. |+|+.||.+++.+ .+.+.+++|+.+|+||+.+-
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 11467889999999998 78999999986 5689999999853 24789999999999999753
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=1.9e-24 Score=222.78 Aligned_cols=276 Identities=19% Similarity=0.175 Sum_probs=241.6
Q ss_pred hhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 167 RSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 167 ~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.+.++.|++.|+ +++..|..|+..|.+++.. +.++..+....|+++.|+.+|.++ .+.+++..|+.+|.+|+.++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~---~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTSH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcCc
Confidence 357889999995 6688999999999999985 456666665258999999999753 37899999999999999998
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+++..+.+. |++|.|+.+|++++..++..|+++|.+|+.++ ..+..+.+.|+++.|+.+|.+++.+++..++.+|.++
T Consensus 92 ~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 92 EGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 899999997 59999999999999999999999999999875 5577788899999999999999999999999999999
Q ss_pred ccc-ccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHH
Q 012677 325 CIL-LENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAA 400 (458)
Q Consensus 325 ~~~-~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 400 (458)
+.. ++++..+++.|+++.|+++|.++ ..+..++.+|.+|+.+++++..+++.|+++.|+.++.++ +..++..+++
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~ 249 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLW 249 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHH
Confidence 985 56888899999999999999876 356678999999999999999999999999999999965 5999999999
Q ss_pred HHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 401 ILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 401 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+|.+|+...+.. .. ..|+++.|+.++.+.++.++..|+++|.+|+...
T Consensus 250 ~L~~l~~~~~~~--~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 297 (529)
T 1jdh_A 250 TLRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp HHHHHHTTCTTC--SC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhcCChhh--HH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 999999876532 11 2478999999999999999999999999998754
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.92 E-value=5e-24 Score=225.38 Aligned_cols=275 Identities=19% Similarity=0.175 Sum_probs=242.3
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
+.++.|+..|. +++.+|..|+..|.+++... .++..+....|+++.|+.+|.++ .+.+++..|+.+|.+|+.+.+
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~---~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHTTSHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcChh
Confidence 57889999995 67889999999999999865 46666665258999999999864 378999999999999999999
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
++..+.+. |+++.|+.+|++++..++..|+++|.+|+..+ ..+..+.+.|+|+.|+.+|++++++++..++.+|.+|+
T Consensus 90 ~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 90 GLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HHHHHHTT-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHc-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 99999987 59999999999999999999999999999875 45777888999999999999999999999999999999
Q ss_pred c-cccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 326 I-LLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 326 ~-~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
. .++++..+++.|+++.|+++|.++ ..+..++.+|.+|+.+++++..+++.|+++.|+.++.+. +..+++.++++
T Consensus 169 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~a~~~ 247 (644)
T 2z6h_A 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWT 247 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-CHHHHHHHHHH
T ss_pred hcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHH
Confidence 6 667899999999999999999876 356789999999999999999999999999999999965 59999999999
Q ss_pred HHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 402 LYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 402 L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
|.+|+...+.. .. ..++++.|+.++.+.++.+++.|+++|.+|+...
T Consensus 248 L~nL~~~~~~~--~~--~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 248 LRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp HHHHGGGCTTC--CS--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcchhh--hh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999876432 11 2478999999999999999999999999998754
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=4.6e-23 Score=212.48 Aligned_cols=278 Identities=14% Similarity=0.106 Sum_probs=239.4
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-c
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-D 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~ 245 (458)
+.++.|++.+. +++..+..|+..|.+++..++..+..+.+ .|+++.|+.+|.+. +..++..++.+|.+++.+ +
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~----~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT----NVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHhCCH
Confidence 57889999995 56788999999999999988888888888 89999999999874 788899999999999975 5
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+++..+... |+++.|+.+|+++ +...+..++.+|.+|+.+++++..+.+.|+++.|+.++.++++.++..++++|.+|
T Consensus 176 ~~~~~i~~~-~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 176 ESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 678888887 5899999999887 45677788999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhc-CChhHHhHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRES-TCERNKENCAA 400 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~ 400 (458)
+....... ...|+++.|+++|.++ .++..++++|.+|+. +++++..+.+.|+++.|+++|.+. +++.+++.|++
T Consensus 255 ~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~ 332 (529)
T 1jdh_A 255 SDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332 (529)
T ss_dssp HTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence 98764332 2358999999999876 688999999999998 578999999999999999999863 33799999999
Q ss_pred HHHHHhccCchh--HHHHHHhhhhhHHHHHHhhhCC-HHHHHHHHHHHHHHHhhHh
Q 012677 401 ILYNICFTDRTR--TREIMEEENANGTLSRLAENGT-SRAKRKANGILERLNKAAL 453 (458)
Q Consensus 401 ~L~~L~~~~~~~--~~~~~~~~g~~~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~~ 453 (458)
+|.||+.+.+.. .+..+...|+++.|+.++.+++ +.++..|+++|++++....
T Consensus 333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~ 388 (529)
T 1jdh_A 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh
Confidence 999999875432 2344556889999999999876 5899999999999986543
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.3e-22 Score=214.45 Aligned_cols=278 Identities=15% Similarity=0.111 Sum_probs=239.1
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc-Cc
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI-HD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~-~~ 245 (458)
+.++.|++.|. ++...+..|+..|.+++..++..+..+.+ .|+++.|+.+|++. +..++..++.+|.+++. ++
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT----NVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcC----CHHHHHHHHHHHHHHHhcCc
Confidence 57889999995 56788999999999999988888888888 89999999999975 67888888899999996 56
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCC-HHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGT-IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+++..+... |+++.|+.+|++++ ...+..++.+|.+|+...+++..+.+.|+++.|+.++.+++..++..++++|.+|
T Consensus 173 ~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 173 ESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHT-THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 688888887 49999999999874 6788999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcC-ChhHHhHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIREST-CERNKENCAA 400 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~ 400 (458)
+...... ....|+++.|+++|.++ .++..++++|.+|+. +++++..+.+.|+++.|+.+|.+.. .+.+++.|++
T Consensus 252 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~ 329 (644)
T 2z6h_A 252 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329 (644)
T ss_dssp GGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHH
Confidence 9765432 22348999999999876 678999999999998 5789999999999999999998643 2799999999
Q ss_pred HHHHHhccCch--hHHHHHHhhhhhHHHHHHhhhCC-HHHHHHHHHHHHHHHhhHh
Q 012677 401 ILYNICFTDRT--RTREIMEEENANGTLSRLAENGT-SRAKRKANGILERLNKAAL 453 (458)
Q Consensus 401 ~L~~L~~~~~~--~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~~ 453 (458)
+|.+|+...+. ..+..+...|+++.|++++.+.+ +.+++.|+++|++|+....
T Consensus 330 aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~ 385 (644)
T 2z6h_A 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 385 (644)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred HHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH
Confidence 99999986442 22343455889999999998875 6899999999999986543
No 30
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=3.6e-24 Score=194.67 Aligned_cols=194 Identities=14% Similarity=0.115 Sum_probs=166.8
Q ss_pred CCHHHHHHHHhcCCH--HHHHHHHHHHHHhhcc-CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc-cccch
Q 012677 256 LAIPLLIDSVRTGTI--ETRRNAAAALFSLSAL-DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI-LLENK 331 (458)
Q Consensus 256 ~~i~~Lv~lL~~~~~--~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~ 331 (458)
-.+|.||.+|++++. +++..|+++|.+|+.. ++++..|.+.|+||+||.+|++++++++..|+++|.||+. +++|+
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368999999999987 8999999999999964 5689999999999999999999999999999999999998 46799
Q ss_pred hHHHhhCcHHHHHHHhcc-C--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHh---hc------------CChh
Q 012677 332 RRAVHAGAVRVILRKIME-N--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIR---ES------------TCER 393 (458)
Q Consensus 332 ~~i~~~g~v~~Lv~ll~~-~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~---~~------------~~~~ 393 (458)
..++++|+||+|+++|.+ + .+++.++.+|++|+..+++|..|++. +++.|++++. .+ .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999974 3 68999999999999999999999875 6999998663 11 2468
Q ss_pred HHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC------CHHHHHHHHHHHHHHHh
Q 012677 394 NKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG------TSRAKRKANGILERLNK 450 (458)
Q Consensus 394 ~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~------~~~~~~~A~~~L~~l~~ 450 (458)
++++|.++|+||+..+++..+.+....|.++.|+.+++.+ ++..++.|+.+|+||+-
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 9999999999999876443334444568899999998753 56899999999999983
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=1e-22 Score=184.12 Aligned_cols=194 Identities=18% Similarity=0.285 Sum_probs=174.4
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc-cCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc-cccchh
Q 012677 255 PLAIPLLIDSVRTGTIETRRNAAAALFSLSA-LDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI-LLENKR 332 (458)
Q Consensus 255 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~ 332 (458)
+++.+.|+.+|++++.+++..|+++|.+|+. +++++..+.+.|+|+.|+.+|+++++.++..|+++|.+|+. .++++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3588999999999999999999999999995 45668889999999999999999999999999999999996 456788
Q ss_pred HHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 333 RAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 333 ~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
.+++.|+++.|+.+|.++ .++..|+++|.+|+. +++.+..+.+.|+++.|+++|.++ +..++..|+++|.+|+..+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC
Confidence 899999999999999987 578999999999997 778888999999999999999965 5999999999999999986
Q ss_pred chhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 410 RTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 410 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
+... ..+.+.|+++.|+.++.++++.++++|.++|.+|+.
T Consensus 170 ~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQK-QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHH-HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 6543 555568999999999999999999999999999975
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.90 E-value=1.2e-22 Score=218.51 Aligned_cols=271 Identities=18% Similarity=0.208 Sum_probs=221.7
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..++.+++.|. ++.+.+..++..|+.. .+..+. .|+++.|+.+|.+. +..+++.|+.+|.+|+.+..
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~--~g~ip~Lv~lL~~~----d~~vr~~A~~~L~~L~~~~~ 182 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA--TRAIPELTKLLNDE----DQVVVNKAAVMVHQLSKKEA 182 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH------HHHHHH--HHHHHHHHHHHHCS----CHHHHHHHHHHHHHHHTSHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH--hCCHHHHHHHHCCC----CHHHHHHHHHHHHHHhCCCh
Confidence 35788999996 4566677677666543 223443 59999999999864 88999999999999999988
Q ss_pred hhhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
++..+....|+++.|+.+|+++ +.+++..|+.+|.+|+..++++..+++.|+|+.|+.+|+++++.++..|+++|.+|+
T Consensus 183 ~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa 262 (780)
T 2z6g_A 183 SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 8888887656999999999876 899999999999999999889999999999999999999999999999999999999
Q ss_pred cccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 326 ILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 326 ~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
...+ .+..+++.|+++.|+++|.++ .++..++.+|.+|+. +++++..+.+.|+++.|+.+|+++.....++.++.+
T Consensus 263 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~a 342 (780)
T 2z6g_A 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342 (780)
T ss_dssp HHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9865 555667899999999999876 467788899999997 799999999999999999999977667778899999
Q ss_pred HHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 402 LYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 402 L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
|.+|+.....+ ..+...|+++.|+.++.++++.+++.|+++|.+|+...
T Consensus 343 L~~Ls~~~~~~--~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 343 LKVLSVCSSNK--PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HHHHHTSTTHH--HHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhcChHHH--HHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 99999866543 44445889999999998888888888999988888644
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=2.5e-22 Score=181.50 Aligned_cols=193 Identities=16% Similarity=0.233 Sum_probs=173.1
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc-c
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA-L 286 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~-~ 286 (458)
.|..+.|+.+|++. +..++..|+++|.+++.+ ++++..+.+. |++|.|+.+|++++.+++..|+++|.+|+. +
T Consensus 11 ~~~~~~l~~LL~s~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 11 GSELPQMVQQLNSP----DQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp --CHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cchhHHHHHHhcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 58899999999875 899999999999999955 5577788887 599999999999999999999999999996 4
Q ss_pred CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHh
Q 012677 287 DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAML 363 (458)
Q Consensus 287 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~L 363 (458)
++++..+.+.|+++.|+.+|+++++.++..|+++|.+|+...+ .+..+++.|+++.|+++|.++ .++..|+.+|.+|
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999997654 566788999999999999977 5889999999999
Q ss_pred cCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 364 SSH-QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 364 a~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
+.. ++.+..+.+.|+++.|++++.+. ++.+++.|+++|.+|+.
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 995 89999999999999999999964 59999999999999986
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=1.1e-21 Score=211.24 Aligned_cols=278 Identities=15% Similarity=0.115 Sum_probs=238.1
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-c
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-D 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~ 245 (458)
+.++.|++.|. ++...+..|+..|.+++..++..+..+.+ .|+++.|+.+|.+. +..++..++.+|.+++.. +
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~-~g~v~~Lv~lL~~~----~~~v~~~a~~aL~~La~~~~ 308 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT----NVKFLAITTDCLQILAYGNQ 308 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-cCCHHHHHHHHhcC----CHHHHHHHHHHHHHHhcCCh
Confidence 57888999995 56788999999999999988888999988 89999999999874 778899999999999864 5
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCC-HHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGT-IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+++..+... |+++.|+.+|+.++ ...+..++.+|.+|+....++..+++.|+++.|+.++.+++..++..|+++|.+|
T Consensus 309 e~~~~i~~~-~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 309 ESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHTT-THHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 678888887 58999999999875 5567789999999999889999999999999999999999999999999999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCC-hhHHhHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTC-ERNKENCAA 400 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~~a~~ 400 (458)
+...... ....++++.|+++|.++ .++..|+.+|.+|+. .++++..+++.|+++.|+++|.+..+ +.+++.|++
T Consensus 388 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~ 465 (780)
T 2z6g_A 388 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465 (780)
T ss_dssp HTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence 9766432 22358999999999876 678999999999998 57899999999999999999986432 489999999
Q ss_pred HHHHHhccCchh--HHHHHHhhhhhHHHHHHhhhCCH-HHHHHHHHHHHHHHhhHh
Q 012677 401 ILYNICFTDRTR--TREIMEEENANGTLSRLAENGTS-RAKRKANGILERLNKAAL 453 (458)
Q Consensus 401 ~L~~L~~~~~~~--~~~~~~~~g~~~~L~~ll~~~~~-~~~~~A~~~L~~l~~~~~ 453 (458)
+|.+|+...+.. .+..+...|+++.|++++.+++. .+++.|+++|.+|+....
T Consensus 466 aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 521 (780)
T 2z6g_A 466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 521 (780)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH
T ss_pred HHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH
Confidence 999999765432 23345568899999999988764 899999999999996544
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.8e-22 Score=208.04 Aligned_cols=281 Identities=15% Similarity=0.117 Sum_probs=226.3
Q ss_pred hhhhhhhhHHhhc--CCcHHHHHHHHHHHHHHhhCch--------------------------------------hhhhh
Q 012677 166 SRSHLNSLLEKMS--SSLSDQKEAAKELRLLTKRMPL--------------------------------------FRALF 205 (458)
Q Consensus 166 ~~~~l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~--------------------------------------~~~~i 205 (458)
+...++.|++.+. .+......++..|.+++...+. ++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 3456888888885 3445556666677776653221 56677
Q ss_pred hhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHH---HHHHHHHHHHH
Q 012677 206 GESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIE---TRRNAAAALFS 282 (458)
Q Consensus 206 ~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~---~~~~a~~~L~~ 282 (458)
.+ .|+|+.|+.++++. ++.+++.|+++|.||+.+.++|..+++.| +++.|+.+|.+++.. .+..|+.+|.+
T Consensus 454 ~e-aGvIp~Lv~Ll~S~----s~~~re~A~~aL~nLS~d~~~R~~lvqqG-al~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 454 LR-TELISFLKREMHNL----SPNCKQQVVRIIYNITRSKNFIPQLAQQG-AVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp TT-TTHHHHHHHHGGGS----CHHHHHHHHHHHHHHHTSGGGHHHHHHTT-HHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HH-CcCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 88 99999999999875 88999999999999999999999999985 899999999988654 89999999999
Q ss_pred hhccCcchhHhhc---cCchHHHHHHhhc--CCh------------HHHHHHHHHHHHhccccc-----chhHHHhh-Cc
Q 012677 283 LSALDSNKLIIGK---LGAMTPLIDLLEE--GHP------------LAMKDVASAIFSLCILLE-----NKRRAVHA-GA 339 (458)
Q Consensus 283 Ls~~~~~~~~i~~---~g~i~~Lv~lL~~--~~~------------~~~~~a~~aL~~L~~~~~-----~~~~i~~~-g~ 339 (458)
|....+....+.. .|+|++|+.+|.. +.. -.+..|+.||.||+..++ .+..+++. |+
T Consensus 528 Llis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga 607 (778)
T 3opb_A 528 MLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY 607 (778)
T ss_dssp HHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred HHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence 9976655544422 4999999999983 111 126799999999999873 37778985 99
Q ss_pred HHHHHHHhccC--CcHHHHHHHHHHhcCCHHHH-HHHHhcC------CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc
Q 012677 340 VRVILRKIMEN--SLVDELLAILAMLSSHQDAI-EEIGELG------AIPCLLRIIRESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 340 v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~-~~i~~~g------~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
++.|..+|.++ .++..|+.+++||+.++++. +.+...+ .++.||.++.. ++..++.+|.++|++++...+
T Consensus 608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 608 WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCCh
Confidence 99999999877 58899999999999999875 3553322 38899999985 469999999999999987777
Q ss_pred hhHHHHHHhhhhhHHHHHHhhh--CCHHHHHHHHHHHHHHHhhHh
Q 012677 411 TRTREIMEEENANGTLSRLAEN--GTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 411 ~~~~~~~~~~g~~~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~~ 453 (458)
..++.++...++++.++.++.. .++.++.+++.++.||..+.+
T Consensus 687 ~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 687 LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 6667778766899999999998 899999999999999997543
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.4e-21 Score=202.81 Aligned_cols=276 Identities=12% Similarity=0.135 Sum_probs=223.5
Q ss_pred hhhhhHHhhcC-CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-
Q 012677 169 HLNSLLEKMSS-SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE- 246 (458)
Q Consensus 169 ~l~~Lv~~l~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~- 246 (458)
..+.+++.|.. +.+.+..|++.|..++. ++..|+.+++..|.+..|+.+++.. .+..+...++.+|.||+...+
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~---~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQ---KMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTT---CCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCCCcc
Confidence 56667777764 45668999999999998 5888888887678899999999862 377899999999999976322
Q ss_pred --------------------------------------hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 247 --------------------------------------NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 247 --------------------------------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
++..+.+. |++|.|+.++++++..+++.|+++|.||+.+.+
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea-GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~ 489 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT-ELISFLKREMHNLSPNCKQQVVRIIYNITRSKN 489 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT-THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC-cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH
Confidence 34556666 599999999999999999999999999999999
Q ss_pred chhHhhccCchHHHHHHhhcCChH---HHHHHHHHHHHhcccccchhHHH--h-hCcHHHHHHHhcc-CC----------
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPL---AMKDVASAIFSLCILLENKRRAV--H-AGAVRVILRKIME-NS---------- 351 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~a~~aL~~L~~~~~~~~~i~--~-~g~v~~Lv~ll~~-~~---------- 351 (458)
+|..+++.|++++|+.+|.+++.. ++..|+.+|.+|....+....+- . .|++++|+++|.. +.
T Consensus 490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~ 569 (778)
T 3opb_A 490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569 (778)
T ss_dssp GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence 999999999999999999987544 89999999999986555333321 1 3999999999983 22
Q ss_pred ----c-HHHHHHHHHHhcCCH-----HHHHHHHhc-CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHH---
Q 012677 352 ----L-VDELLAILAMLSSHQ-----DAIEEIGEL-GAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIM--- 417 (458)
Q Consensus 352 ----~-~~~a~~~L~~La~~~-----~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--- 417 (458)
+ +..|+.+|.|||..+ +.|..|+++ |+++.|+.+|.+. +..++.+|+++++||+.........+.
T Consensus 570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~~~ 648 (778)
T 3opb_A 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFNLE 648 (778)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSCCS
T ss_pred cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHhhc
Confidence 1 568999999999964 568889885 9999999999964 589999999999999986653211232
Q ss_pred --HhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 418 --EEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 418 --~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
...+.++.|+.|+.+++..+++.|+++|.+++.
T Consensus 649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 112358899999999999999999999999963
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=2.6e-20 Score=176.53 Aligned_cols=221 Identities=16% Similarity=0.146 Sum_probs=182.0
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHH-HHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHH
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLID-SVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLID 304 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ 304 (458)
+.+.+..|+..|.+++.+.++...+...| ++|.|+. +|++++.+++..|+++|.+++.++ ..+..+++.|++++|+.
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 44678899999999999888999898875 8999999 999999999999999999999876 45788889999999999
Q ss_pred HhhcC-ChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCH
Q 012677 305 LLEEG-HPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAI 379 (458)
Q Consensus 305 lL~~~-~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i 379 (458)
+|+++ +..++..|+++|.+|+.+.. ....+++.|+++.|+.+|.++ .++..|+++|.+|+. +++.+..+++.|++
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence 99975 88999999999999998654 566788899999999999977 678999999999988 68899999999999
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhh--hhhHHH---HHHhh-hC-CHHHHHHHHHHHHHHHh
Q 012677 380 PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEE--NANGTL---SRLAE-NG-TSRAKRKANGILERLNK 450 (458)
Q Consensus 380 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--g~~~~L---~~ll~-~~-~~~~~~~A~~~L~~l~~ 450 (458)
+.|+.+|.+. +..+++.|+.+|.+|+...+... ...... .....| .+-++ .. +..+.++|..+|.++..
T Consensus 212 ~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~~~~-~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 212 QQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGV-RECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHH-HHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCC-ChhHHHHHHHHHHHHHhCChhHH-HHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 9999999965 59999999999999999854322 111111 111222 12223 22 46788999999988763
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.83 E-value=9.4e-20 Score=172.66 Aligned_cols=182 Identities=18% Similarity=0.166 Sum_probs=163.2
Q ss_pred CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHH-HhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHH
Q 012677 269 TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLID-LLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRK 346 (458)
Q Consensus 269 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~l 346 (458)
+.+.+..|+..|.+++.+.+|+..+...|++++|+. +|+++++.++..|+++|.+++.+++ .+..+++.|++++|+++
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 456789999999999998889999999999999999 9999999999999999999998664 67779999999999999
Q ss_pred hccC---CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhh
Q 012677 347 IMEN---SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENA 422 (458)
Q Consensus 347 l~~~---~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~ 422 (458)
|.++ .+++.|+++|.+|+. ++...+.+.+.|+++.|+.+|+++ +..++..|+++|.+|+.+++... ..+.+.|+
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~-~~vv~~g~ 210 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHK-GTLCSMGM 210 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGH-HHHHHTTH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHH-HHHHHcCC
Confidence 9853 578999999999997 688888999999999999999965 59999999999999999876554 44556899
Q ss_pred hHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 423 NGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 423 ~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
++.|+.|+.+.++.+++.|..+|.+|....
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999998763
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.82 E-value=2.1e-20 Score=146.58 Aligned_cols=77 Identities=36% Similarity=0.532 Sum_probs=70.9
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCC
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGI 148 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 148 (458)
.....++++|.||||+++|+|||+++|||+||+.||.+||.. +.+||+|+.+++...+.||..++..|+.|+.+++.
T Consensus 21 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 445568999999999999999999999999999999999984 67999999999999999999999999999988763
No 40
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.82 E-value=3.7e-20 Score=144.56 Aligned_cols=79 Identities=33% Similarity=0.477 Sum_probs=72.3
Q ss_pred CCcCCCCCCccccccccccccCCccCCCc-ccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCC
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLANG-QTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGI 148 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~cg-h~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 148 (458)
+.....++++|.||||+++|+|||+++|| |+||+.||.+||.. +.+||+|+.++....+.||..++..|+.|+.+++.
T Consensus 13 ~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 91 (98)
T 1wgm_A 13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred hhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcch
Confidence 44456689999999999999999999999 99999999999985 67899999999999999999999999999999875
Q ss_pred C
Q 012677 149 E 149 (458)
Q Consensus 149 ~ 149 (458)
.
T Consensus 92 ~ 92 (98)
T 1wgm_A 92 Q 92 (98)
T ss_dssp C
T ss_pred h
Confidence 5
No 41
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.82 E-value=1.3e-20 Score=143.52 Aligned_cols=77 Identities=36% Similarity=0.566 Sum_probs=70.4
Q ss_pred CCcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhC
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHG 147 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~ 147 (458)
+.....++++|.||||+++|+|||+++|||+||+.||.+||.. +.+||+|+.++....+.||..++++|+.|+.+++
T Consensus 5 e~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 5 EIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 3445568999999999999999999999999999999999985 6789999999998899999999999999998764
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.79 E-value=5.2e-20 Score=138.57 Aligned_cols=75 Identities=48% Similarity=1.054 Sum_probs=70.0
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCCC
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGIE 149 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~~ 149 (458)
.+++++.||||+++|.+|++++|||+||+.||.+|+..+..+||.|+.++....+.+|..++++|++|..+++++
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 478899999999999999999999999999999999876789999999999889999999999999999998753
No 43
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.79 E-value=1.8e-19 Score=154.91 Aligned_cols=75 Identities=32% Similarity=0.470 Sum_probs=69.7
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCCC
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGIE 149 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~~ 149 (458)
.+|++|.||||+++|.|||+++|||+||+.||.+||..++.+||+|+.+++...+.||..++.+|+.|+.++|+.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 378999999999999999999999999999999999865457999999999889999999999999999998864
No 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-18 Score=132.82 Aligned_cols=73 Identities=27% Similarity=0.476 Sum_probs=64.6
Q ss_pred CCCccccccccccccCCccCC-CcccccHHHHHHHHhcC-----CCCCCC--CCcc-CCCCCCcccHHHHHHHHHHHHHh
Q 012677 76 LPYEFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEG-----NRTCPQ--TRQV-LSHTVLIPNHLVREMISQWCKEH 146 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~-----~~~CP~--c~~~-l~~~~~~~n~~l~~~i~~~~~~~ 146 (458)
.+++|.||||+++|.|||+++ |||+||+.||.+||..+ ..+||+ |+.. +....+.||..++.+|+.|..++
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 467899999999999999996 99999999999999753 358999 7666 88889999999999999999876
Q ss_pred CC
Q 012677 147 GI 148 (458)
Q Consensus 147 ~~ 148 (458)
+.
T Consensus 84 ~r 85 (94)
T 2yu4_A 84 HR 85 (94)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.71 E-value=8.4e-18 Score=159.03 Aligned_cols=76 Identities=32% Similarity=0.458 Sum_probs=70.0
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCCC
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGIE 149 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~~ 149 (458)
..+++.|.||||+++|.|||+++|||+||+.||.+|+..+..+||+|+.+++...+.||..++.+|++|+.++++.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 3478899999999999999999999999999999999876667999999999889999999999999999988753
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=126.68 Aligned_cols=77 Identities=34% Similarity=0.544 Sum_probs=67.6
Q ss_pred CCCCCCccccccccccccCCccCC-CcccccHHHHHHHHhc-CCCCCCCCCccC-CCCCCcccHHHHHHHHHHHHHhCCC
Q 012677 73 LLGLPYEFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDE-GNRTCPQTRQVL-SHTVLIPNHLVREMISQWCKEHGIE 149 (458)
Q Consensus 73 ~~~~~~~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~-~~~~CP~c~~~l-~~~~~~~n~~l~~~i~~~~~~~~~~ 149 (458)
...+++++.||||+++|.+|++++ |||+||+.||.+|+.. +...||.||.++ ....+.+|..++.+++.|...++..
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 345788999999999999999999 9999999999999964 346899999997 4667899999999999999877643
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.69 E-value=7.3e-16 Score=156.21 Aligned_cols=279 Identities=17% Similarity=0.188 Sum_probs=223.7
Q ss_pred hhhhhhHHhhcCC--cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMSSS--LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
++|+.|+..+++. .+.|+.|+..|+.+++. ++..++. ++++.|+..|+.. ..|.++...++.+|.++-..+
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg~--~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVGI--QAMEHLIHVLQTD--RSDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHHH--HTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhhh--hhHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCC
Confidence 5899999999633 78999999999999864 5666666 8899999999874 258899999999998864332
Q ss_pred h------------------hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--chhHhhc-cCchHHHHH
Q 012677 246 E------------------NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKLIIGK-LGAMTPLID 304 (458)
Q Consensus 246 ~------------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~-~g~i~~Lv~ 304 (458)
+ +...+....+.++.|+.+|++.+..+|.+++..|..|+.+.. +++.|.. .++|+.||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 2 223555556789999999999999999999999999987664 4777775 799999999
Q ss_pred HhhcCChHHHHHHHHHHHHhcccccchhHHHhh-CcHHHHHHHhccC------CcHHHHHHHHHHhcC-CHHHHHHHHhc
Q 012677 305 LLEEGHPLAMKDVASAIFSLCILLENKRRAVHA-GAVRVILRKIMEN------SLVDELLAILAMLSS-HQDAIEEIGEL 376 (458)
Q Consensus 305 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~------~~~~~a~~~L~~La~-~~~~~~~i~~~ 376 (458)
+|++....+|..++.+|.+|+.++.+.++++.. |+++.|+.++.++ .+...|+.+|.+|.. ++.++..|.+.
T Consensus 174 lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt 253 (651)
T 3grl_A 174 LLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEG 253 (651)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 999999999999999999999999988887774 9999999999854 367889999999999 78899999999
Q ss_pred CCHHHHHHHHhhcCCh-----hHHhH---HHHHHHHHhccCc------hhHHHHHHhhhhhHHHHHHhhhC--CHHHHHH
Q 012677 377 GAIPCLLRIIRESTCE-----RNKEN---CAAILYNICFTDR------TRTREIMEEENANGTLSRLAENG--TSRAKRK 440 (458)
Q Consensus 377 g~i~~Lv~ll~~~~~~-----~~~~~---a~~~L~~L~~~~~------~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~ 440 (458)
|+++.|..++...... ..-.+ ++.++..|+..+. .++ ..+.+.|+++.|++++.+. ...++..
T Consensus 254 ~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ-~~~~~~g~l~~Ll~ll~~~~~p~~i~~~ 332 (651)
T 3grl_A 254 SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQ-KAMFQCGLLQQLCTILMATGVPADILTE 332 (651)
T ss_dssp TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHH-HHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence 9999999999743211 12233 6677777776532 234 3455689999999998764 6678989
Q ss_pred HHHHHHHHHhhHhh
Q 012677 441 ANGILERLNKAALI 454 (458)
Q Consensus 441 A~~~L~~l~~~~~~ 454 (458)
|..++..+.+..+.
T Consensus 333 Al~tla~~irgN~~ 346 (651)
T 3grl_A 333 TINTVSEVIRGCQV 346 (651)
T ss_dssp HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHH
Confidence 98888887765443
No 48
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.61 E-value=4.3e-16 Score=128.08 Aligned_cols=71 Identities=17% Similarity=0.334 Sum_probs=63.6
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC-CCCcccHHHHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH-TVLIPNHLVREMISQWCKE 145 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~-~~~~~n~~l~~~i~~~~~~ 145 (458)
.+.+++.||||+++|.+|++++|||+||+.||.+|+..+...||.||.++.. ..+.+|..++.+++.|...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 3567789999999999999999999999999999998666689999999987 6789999999999988643
No 49
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.57 E-value=1.8e-15 Score=128.04 Aligned_cols=69 Identities=23% Similarity=0.499 Sum_probs=63.0
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC-CCcccHHHHHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT-VLIPNHLVREMISQWCK 144 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~-~~~~n~~l~~~i~~~~~ 144 (458)
+++++.||||++.|.+|++++|||+||+.||.+|+..+...||+||.++... .+.+|..++.+++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 5667899999999999999999999999999999987666899999999877 78999999999998863
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.3e-15 Score=135.23 Aligned_cols=76 Identities=26% Similarity=0.403 Sum_probs=66.6
Q ss_pred CCcCCCCCCccccccccccccCCccC-CCcccccHHHHHHHHhcC-CCCCCC--CCccCCCCCCcccHHHHHHHHHHHHH
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEG-NRTCPQ--TRQVLSHTVLIPNHLVREMISQWCKE 145 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~-~~~CP~--c~~~l~~~~~~~n~~l~~~i~~~~~~ 145 (458)
+........+++||||+++|+|||+. .|||+||+.||.+||..+ ...||+ |++.+....+.||..++.+++.|..+
T Consensus 172 DI~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 172 DLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp CCCCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred cceecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 44445567899999999999999985 999999999999999753 458999 99999999999999999999998753
No 51
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.54 E-value=4.1e-15 Score=117.05 Aligned_cols=71 Identities=17% Similarity=0.354 Sum_probs=64.0
Q ss_pred CCCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHh
Q 012677 75 GLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEH 146 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~ 146 (458)
.+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.||..+....+.+|..++.+++.|....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 345678999999999999988 89999999999999985 568999999999888999999999999997654
No 52
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.54 E-value=3.1e-16 Score=118.15 Aligned_cols=65 Identities=28% Similarity=0.450 Sum_probs=56.3
Q ss_pred CCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcC------CCCCCCCCccCCCCCCcccHHHHH
Q 012677 73 LLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEG------NRTCPQTRQVLSHTVLIPNHLVRE 137 (458)
Q Consensus 73 ~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~------~~~CP~c~~~l~~~~~~~n~~l~~ 137 (458)
...+.+++.||||++.+.+|++++|||+||+.||.+|+... ...||.||..+....+.+|..+++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 34577889999999999999999999999999999999852 568999999998888888876543
No 53
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=9.6e-15 Score=105.66 Aligned_cols=59 Identities=12% Similarity=0.361 Sum_probs=51.4
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
.....+.+++.||||++.+.+|+.++|||+||+.||.+|+..+...||.||.++....+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 7 GFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 44456788999999999999999999999999999999997556789999999876543
No 54
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.53 E-value=2.9e-15 Score=117.93 Aligned_cols=70 Identities=27% Similarity=0.430 Sum_probs=61.1
Q ss_pred CCCCccccccccccccCCcc-CCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVV-LANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCK 144 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~-l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 144 (458)
.+.+++.||||++.+.+|+. ++|||+||+.||.+|+......||.||.++....+.++..+..+++.+-.
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 35577899999999999999 89999999999999998755689999999998888888888777766543
No 55
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.52 E-value=5.3e-15 Score=120.27 Aligned_cols=72 Identities=21% Similarity=0.475 Sum_probs=64.1
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQW 142 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~ 142 (458)
.+...+.+++.||||++.+.+|++++|||+||+.||.+|+......||.||.++....+.++..+++.|.++
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 10 EFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CBSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred hhccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 356678899999999999999999999999999999999986556899999999988888999888877754
No 56
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.52 E-value=2.4e-15 Score=121.87 Aligned_cols=70 Identities=26% Similarity=0.439 Sum_probs=61.5
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC-------CCCcccHHHHHHHHHHH
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH-------TVLIPNHLVREMISQWC 143 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~-------~~~~~n~~l~~~i~~~~ 143 (458)
....+++.||||++.+.+|++++|||+||+.||.+|+..+...||.||..+.. .....|..+..++++|.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 34567899999999999999999999999999999998767799999999864 45678899999998886
No 57
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-14 Score=105.64 Aligned_cols=61 Identities=23% Similarity=0.382 Sum_probs=52.5
Q ss_pred CcCCCCCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
.....+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||+||..+...++.++
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 3445578899999999999999997 99999999999999985 5689999999987766544
No 58
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=3e-15 Score=114.39 Aligned_cols=67 Identities=28% Similarity=0.452 Sum_probs=57.3
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcC-----CCCCCCCCccCCCCCCcccHHHHH
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEG-----NRTCPQTRQVLSHTVLIPNHLVRE 137 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~-----~~~CP~c~~~l~~~~~~~n~~l~~ 137 (458)
.....+.+.+.||||++.+.+|++++|||+||+.||.+|+... ...||.||..+....+.+|..++.
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 11 SVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 3445577889999999999999999999999999999999862 568999999999888888866543
No 59
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.50 E-value=7.9e-15 Score=154.04 Aligned_cols=125 Identities=22% Similarity=0.265 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCCCcChhHHHHHHHHHHhhc---cc-cccC-------CCCcCCC-CCCCCcCCCCCCcccccccccccc
Q 012677 23 LQRLVKAILDEDDYGGLQVTNEALRVLSCLK---DL-KLKK-------PHSFKGG-AAGDDHLLGLPYEFRCPISGEIMT 90 (458)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~-~~~~-------~~~~~~~-~~~~~~~~~~~~~~~C~ic~~~~~ 90 (458)
.+.|+++++.|+++|.++.|++|..++.+.. .. .+.+ ....+.. .+.+....++|++|.|||.+++|+
T Consensus 823 ~~~F~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~ 902 (968)
T 3m62_A 823 QSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMK 902 (968)
T ss_dssp CHHHHHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCS
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHh
Confidence 4689999999999999999999999995431 11 1100 0000000 000223467899999999999999
Q ss_pred CCccCCCc-ccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCC
Q 012677 91 DPVVLANG-QTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGI 148 (458)
Q Consensus 91 ~p~~l~cg-h~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 148 (458)
|||++|.| ++|+|.+|.+|+.. +.+||++|.+++...+.||+.+++.|++||.+++.
T Consensus 903 DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 903 DPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp SEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred CCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 99999998 69999999999986 66899999999999999999999999999988753
No 60
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=106.27 Aligned_cols=62 Identities=32% Similarity=0.464 Sum_probs=50.5
Q ss_pred CcCCCCCCccccccccccccCCccCC-CcccccHHHHHHHHhcC-CCCCCCCCccCCCC-CCccc
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEG-NRTCPQTRQVLSHT-VLIPN 132 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~-~~~CP~c~~~l~~~-~~~~n 132 (458)
.....+++++.||||++.|.+|++++ |||+||+.||.+|+... ...||+||.++... .+.+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 33455788999999999999999999 99999999999999853 36899999986543 33344
No 61
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=105.33 Aligned_cols=60 Identities=25% Similarity=0.495 Sum_probs=51.5
Q ss_pred CCcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhc--CCCCCCCCCccCCCCCC
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE--GNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~--~~~~CP~c~~~l~~~~~ 129 (458)
......+.+.+.||||++.+.+|++++|||+||+.||.+|+.. +...||+||.++....+
T Consensus 11 ~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 11 GQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHHHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3445567889999999999999999999999999999999973 45689999999876654
No 62
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=107.25 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=52.8
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHH
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVRE 137 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~ 137 (458)
+...+.+.||||++.+.+|++++|||+||+.||.+|+.. ...||+||.++. ..+.+|..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence 345678899999999999999999999999999999985 668999999997 56667765533
No 63
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.50 E-value=1e-14 Score=116.69 Aligned_cols=68 Identities=18% Similarity=0.439 Sum_probs=60.1
Q ss_pred CCCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCC----CCcccHHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT----VLIPNHLVREMISQWC 143 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~----~~~~n~~l~~~i~~~~ 143 (458)
.+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.|+..+... .+.+|..++.+++.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 456789999999999999998 99999999999999985 47899999998865 6778999999988764
No 64
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.9e-15 Score=113.72 Aligned_cols=67 Identities=28% Similarity=0.554 Sum_probs=57.3
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhc-----CCCCCCCCCccCCCCCCcccHHHHH
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE-----GNRTCPQTRQVLSHTVLIPNHLVRE 137 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~-----~~~~CP~c~~~l~~~~~~~n~~l~~ 137 (458)
.....+.+.+.||||++.+.+|+.++|||+||+.|+..|+.. +...||.||..+....+.+|..++.
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 11 GILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 344567788999999999999999999999999999999975 3568999999999888888866543
No 65
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.49 E-value=2.8e-12 Score=130.17 Aligned_cols=281 Identities=12% Similarity=0.078 Sum_probs=214.8
Q ss_pred hhhhhhHHhhc---CCcHHHHHHHHHHHHHHhhCch-----------------hhhhhhhccCChHHHhhccCCCCCCCC
Q 012677 168 SHLNSLLEKMS---SSLSDQKEAAKELRLLTKRMPL-----------------FRALFGESTDAIPLLLSPLSPGRADTD 227 (458)
Q Consensus 168 ~~l~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~-----------------~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 227 (458)
.+++.|+..|. .|.+....++..|.++...++. +.+.+.+..+.|+.|+.+|.+. +
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~----d 135 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF----D 135 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC----C
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc----c
Confidence 47889999995 4566677788888776654332 2233433378899999999874 8
Q ss_pred hhHHHHHHHHHHhcccCch--hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHH
Q 012677 228 PGLLEDLITTILNLSIHDE--NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLID 304 (458)
Q Consensus 228 ~~~~~~a~~~L~~ls~~~~--~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ 304 (458)
-.++..++..|..|+.+.+ ++..+....++++.|+.+|+.....+|..++.+|.+|+.++.+...++. .|+++.|+.
T Consensus 136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHH
Confidence 8999999999999987654 5788888878999999999999999999999999999998888666666 899999999
Q ss_pred HhhcCC----hHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC-C-------cHHH---HHHHHHHhcCC--
Q 012677 305 LLEEGH----PLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN-S-------LVDE---LLAILAMLSSH-- 366 (458)
Q Consensus 305 lL~~~~----~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~-~-------~~~~---a~~~L~~La~~-- 366 (458)
++.... ..+...++.+|.||...+. |+..+.+.|+++.|..+|..+ + .... ++.++.-|...
T Consensus 216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 216 IITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295 (651)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998743 3678899999999998765 888888999999999999744 1 1122 56666666552
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHhhc-CChhHHhHHHHHHHHHhccCchhHHHHHHhh----hhhHHHHH----Hhhh
Q 012677 367 -----QDAIEEIGELGAIPCLLRIIRES-TCERNKENCAAILYNICFTDRTRTREIMEEE----NANGTLSR----LAEN 432 (458)
Q Consensus 367 -----~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~----g~~~~L~~----ll~~ 432 (458)
+.++..+.+.|+++.|++++..+ -+..++..|+.++..+..+++..+..+.... ...+.++. ++.+
T Consensus 296 ~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~ 375 (651)
T 3grl_A 296 PPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNE 375 (651)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcc
Confidence 35789999999999999999853 2578999999999999999886654544321 01233433 3433
Q ss_pred -CCHHHHHHHHHHHHHHHhhH
Q 012677 433 -GTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 433 -~~~~~~~~A~~~L~~l~~~~ 452 (458)
....+|-.|+..++.+....
T Consensus 376 ~~~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 376 RQPFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp TSCHHHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHHHhCC
Confidence 35678888888888776444
No 66
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.47 E-value=1.7e-14 Score=117.05 Aligned_cols=67 Identities=24% Similarity=0.347 Sum_probs=61.1
Q ss_pred CCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKE 145 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~ 145 (458)
+.+++.||||++++.+|+++ +|||+||+.||..|+. ..||.||.++....+.+|..++.+++.|...
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence 45678899999999999999 9999999999999997 5799999999888899999999999988654
No 67
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.47 E-value=2.2e-14 Score=123.99 Aligned_cols=71 Identities=27% Similarity=0.452 Sum_probs=61.7
Q ss_pred CCCCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCC-CCCcccHHHHHHHHHHHH
Q 012677 74 LGLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH-TVLIPNHLVREMISQWCK 144 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~-~~~~~n~~l~~~i~~~~~ 144 (458)
..+.+.+.||||++.+.+|+.+ +|||+||+.||.+|+..+...||.||.++.. ..+.+|..++.+|..|..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 3456788999999999999998 9999999999999999767789999999854 568899999999998854
No 68
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=8.3e-14 Score=99.69 Aligned_cols=51 Identities=29% Similarity=0.534 Sum_probs=44.7
Q ss_pred CCcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhc--CCCCCCCC
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE--GNRTCPQT 120 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~--~~~~CP~c 120 (458)
......+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||+|
T Consensus 11 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 11 GQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3455667889999999999999999999999999999999984 45689998
No 69
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.45 E-value=2.9e-14 Score=119.22 Aligned_cols=64 Identities=22% Similarity=0.491 Sum_probs=51.6
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWC 143 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~ 143 (458)
.+++.||||++.|.+|++++|||+||..||.+|+.. ..+||+||.++... .++..+...++.+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 356789999999999999999999999999999985 56899999998654 23555555555543
No 70
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.44 E-value=3.5e-14 Score=114.46 Aligned_cols=67 Identities=18% Similarity=0.430 Sum_probs=56.3
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcC--CCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEG--NRTCPQTRQVLSHTVLIPNHLVREMISQWC 143 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~--~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~ 143 (458)
.+.+.||||++.+.+|++++|||+||+.||.+|+... ...||.||.++....+.+|..+..+++.+.
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 3456799999999999999999999999999999853 258999999999888888766666666554
No 71
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.43 E-value=1.8e-14 Score=120.43 Aligned_cols=71 Identities=14% Similarity=0.278 Sum_probs=58.6
Q ss_pred CCcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC---------CCCcccHHHHHHHH
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH---------TVLIPNHLVREMIS 140 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~---------~~~~~n~~l~~~i~ 140 (458)
+.+...+.+++.||||++++.+|++++|||+||+.||.+|+..+...||.||.++.. ..+.++..+++.|.
T Consensus 22 ~~~~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 22 TLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GGTGGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred hhhhccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 344467889999999999999999999999999999999998766689999997532 23557777766665
No 72
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=7.1e-14 Score=100.69 Aligned_cols=55 Identities=20% Similarity=0.391 Sum_probs=48.0
Q ss_pred Cccccccccc-cccCCc----cCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 78 YEFRCPISGE-IMTDPV----VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 78 ~~~~C~ic~~-~~~~p~----~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
+++.||||++ .+.+|+ +++|||+||+.||.+|+..+...||.||.++....+.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4678999999 999994 679999999999999988666789999999988777654
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.41 E-value=5.3e-14 Score=99.04 Aligned_cols=54 Identities=20% Similarity=0.431 Sum_probs=48.6
Q ss_pred ccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccH
Q 012677 79 EFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNH 133 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~ 133 (458)
.|.||||+++|.|||++ +|||+||+.||.+|+.. +.+||++++++...++.|++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 47899999999999999 89999999999999986 45799999999988888775
No 74
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=120.30 Aligned_cols=71 Identities=21% Similarity=0.485 Sum_probs=63.5
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHH
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQ 141 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~ 141 (458)
.+...+++.+.||||+++|.+|++++|||+||+.||.+|+..+..+||.||.++....+.++..+...|.+
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 10 EFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp EESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred hhccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 45667899999999999999999999999999999999998656689999999998888899888877764
No 75
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.7e-13 Score=94.54 Aligned_cols=50 Identities=30% Similarity=0.723 Sum_probs=43.3
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhc--CCCCCCCC
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE--GNRTCPQT 120 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~--~~~~CP~c 120 (458)
.....+.+.+.||||++.+.+|+.++|||+||+.||.+|+.. ....||+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 7 GALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hHhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 334556788999999999999999999999999999999764 46789997
No 76
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.8e-13 Score=102.69 Aligned_cols=56 Identities=30% Similarity=0.550 Sum_probs=48.8
Q ss_pred cCCCCCCccccccccccccC----CccCCCcccccHHHHHHHHhcC--CCCCCCCCccCCCC
Q 012677 72 HLLGLPYEFRCPISGEIMTD----PVVLANGQTFDRPCIQRWLDEG--NRTCPQTRQVLSHT 127 (458)
Q Consensus 72 ~~~~~~~~~~C~ic~~~~~~----p~~l~cgh~fc~~ci~~~~~~~--~~~CP~c~~~l~~~ 127 (458)
....+.+.+.||||++.+.+ |+.++|||+||+.||.+|+... ...||+||..+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34557788999999999999 9999999999999999999864 46899999988764
No 77
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.38 E-value=1.1e-13 Score=112.28 Aligned_cols=66 Identities=27% Similarity=0.385 Sum_probs=55.3
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCc-ccHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI-PNHLVREMIS 140 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~-~n~~l~~~i~ 140 (458)
.+.+++.||||++.+.+|+.++|||+||+.||.+|+......||.||.++....+. ++..+..++.
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~ 85 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILN 85 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHH
Confidence 35568899999999999999999999999999999987567899999999877654 4555555554
No 78
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.6e-13 Score=98.79 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=45.7
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
..+.+.|+||++.+.+|+.++|||.||+.||.+|+.. ...||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 4567899999999999999999999999999999985 46899999998654
No 79
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.36 E-value=1.9e-13 Score=100.34 Aligned_cols=56 Identities=25% Similarity=0.461 Sum_probs=49.0
Q ss_pred CCCccccccccccccCC-------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 76 LPYEFRCPISGEIMTDP-------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p-------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
..+++.||||++.+.+| +.++|||+||..||.+|+.. ..+||+||.++....+.++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 45678899999999998 78899999999999999986 4689999999988777654
No 80
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.33 E-value=8.4e-11 Score=105.59 Aligned_cols=190 Identities=19% Similarity=0.194 Sum_probs=154.0
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
.+.++.|+.+|.+. +..++..|+..|..+.. . ..++.|+.+|.+++..+|..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~----~~~vR~~A~~~L~~~~~----------~-~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD----------E-RAVEPLIKALKDEDAWVRRAAADALGQIG---- 78 (211)
T ss_dssp GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCC----------G-GGHHHHHHHTTCSCHHHHHHHHHHHHHHC----
T ss_pred HhHHHHHHHHHcCC----CHHHHHHHHHHHHHhCC----------c-cHHHHHHHHHcCCCHHHHHHHHHHHHhhC----
Confidence 57899999999874 89999999999987643 1 37899999999999999999999998874
Q ss_pred chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH 366 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~ 366 (458)
..++++.|+.+|.++++.++..|+.+|..+.. .++++.|+.++.++ .++..++.+|..+..
T Consensus 79 ------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 79 ------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp ------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred ------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence 34679999999999999999999999998843 36889999999877 578889999998843
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 367 QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 367 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
..+++.|+.++.+. ++.++..|+.+|..+.. ..+++.|..++.+.++.++..|..+|.
T Consensus 142 ---------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp ---------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34789999999865 59999999999999843 235678888999999999999999999
Q ss_pred HHHhhHhhhh
Q 012677 447 RLNKAALIVH 456 (458)
Q Consensus 447 ~l~~~~~~~~ 456 (458)
.+.......+
T Consensus 200 ~~~~~~~~~~ 209 (211)
T 3ltm_A 200 THKSFNHHHH 209 (211)
T ss_dssp C---------
T ss_pred hcCCCCCCCC
Confidence 9987665544
No 81
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.33 E-value=1.7e-12 Score=96.37 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=46.3
Q ss_pred CCCCccccccccccc--cCCccCC--CcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 75 GLPYEFRCPISGEIM--TDPVVLA--NGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~--~~p~~l~--cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
.+.+++.||||++.+ .|+++++ |||+||+.|+.+++..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 467889999999988 4667766 999999999999997667799999999876543
No 82
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.9e-13 Score=95.90 Aligned_cols=52 Identities=27% Similarity=0.511 Sum_probs=45.6
Q ss_pred CCCCCccccccccccccCC-------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 74 LGLPYEFRCPISGEIMTDP-------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p-------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
....+.+.|+||++.+.+| +.++|||.||..||.+|+.. ..+||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3467788999999999988 78899999999999999986 5689999998764
No 83
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.31 E-value=1.7e-12 Score=97.10 Aligned_cols=58 Identities=24% Similarity=0.475 Sum_probs=48.0
Q ss_pred CCCCCccccccccccccCCc---cCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 74 LGLPYEFRCPISGEIMTDPV---VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~---~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
....+.+.|+||++.+.+|. .++|||.||+.||.+|+.. ..+||+||..+....+.++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 34567789999999998773 4699999999999999985 5689999999987766544
No 84
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.29 E-value=4.8e-13 Score=96.00 Aligned_cols=54 Identities=26% Similarity=0.489 Sum_probs=46.7
Q ss_pred CccccccccccccCC-------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 78 YEFRCPISGEIMTDP-------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p-------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
+++.||||++.+.+| +.++|||.||..||.+|+.. ..+||.||.++....+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 457899999999987 77899999999999999986 6689999999987766543
No 85
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.23 E-value=2.7e-10 Score=107.00 Aligned_cols=194 Identities=9% Similarity=0.000 Sum_probs=132.0
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.+++.|++.|. +++.+|..|+..|..+.. .+.++.|+.+|.+. +..++..|+.+|..+.....
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~----~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDK----NYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCCTT
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccc
Confidence 46788888885 567888889888877642 35788899998874 78899999999988764322
Q ss_pred hhhhhhcCCCCHHHHH-HHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLI-DSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
... ..++.|. .+++.++..+|..++.+|.++...+.. ....+++.|+.+|.++++.++..|+.+|.++.
T Consensus 87 ~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 CED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp THH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred cch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 100 1333343 245667889999999999988643211 12345778888888888888888888887764
Q ss_pred ccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 326 ILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 326 ~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
. .++++.|+.++.++ .++..++.+|..+.... ..+++.|+.++.+. ++.++..|+.+|.
T Consensus 157 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~-~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 157 D----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDK-NEEVRIEAIIGLS 217 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 3 24778888888766 46777777777764211 12456677777654 3777777777777
Q ss_pred HHh
Q 012677 404 NIC 406 (458)
Q Consensus 404 ~L~ 406 (458)
.+.
T Consensus 218 ~~~ 220 (280)
T 1oyz_A 218 YRK 220 (280)
T ss_dssp HTT
T ss_pred HhC
Confidence 664
No 86
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=3.5e-10 Score=101.51 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=149.9
Q ss_pred hhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 167 RSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 167 ~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
...++.|++.|. .+..+|..|+..|..+.. .++++.|+.+|.+. +..++..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~----~~~vr~~a~~aL~~~~~-- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDE----DAWVRRAAADALGQIGD-- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS----CHHHHHHHHHHHHHHCC--
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCC----CHHHHHHHHHHHHhhCC--
Confidence 357888999995 567888899888876532 46789999999874 88999999999988752
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
...++.|+.+|.+++..+|..|+.+|..+.. .++++.|+.+|+++++.++..|+.+|.++.
T Consensus 80 ---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 80 ---------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 2378999999999999999999999998742 457999999999999999999999999984
Q ss_pred ccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 326 ILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 326 ~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
. ...++.|+.++.++ .++..++.+|..+.. ..+++.|..++.+. ++.++..|..+|.
T Consensus 141 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 141 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLE 199 (211)
T ss_dssp C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 2 35789999999877 578889999998843 23578889999865 4999999999999
Q ss_pred HHhccCch
Q 012677 404 NICFTDRT 411 (458)
Q Consensus 404 ~L~~~~~~ 411 (458)
.+......
T Consensus 200 ~~~~~~~~ 207 (211)
T 3ltm_A 200 THKSFNHH 207 (211)
T ss_dssp C-------
T ss_pred hcCCCCCC
Confidence 98876543
No 87
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.22 E-value=5.4e-10 Score=99.46 Aligned_cols=183 Identities=19% Similarity=0.206 Sum_probs=153.5
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
.+..+.++.+|.+. +..++..|+.+|..+.. . ..++.|+.+|.+++..+|..|+.+|..+.
T Consensus 13 ~~~~~~~i~~L~~~----~~~vr~~A~~~L~~~~~----------~-~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD----------E-RAVEPLIKALKDEDAWVRRAAADALGQIG---- 73 (201)
T ss_dssp HHHHHHHHHHTTCS----CHHHHHHHHHHHHHHCC----------G-GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----
T ss_pred CcchHHHHHHhcCC----CHHHHHHHHHHHHhcCC----------h-hHHHHHHHHHcCCCHHHHHHHHHHHHhhC----
Confidence 46788999999885 89999999999987653 1 37899999999999999999999998763
Q ss_pred chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH 366 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~ 366 (458)
..++++.|+.+|.++++.++..|+.+|..+.. ..+++.|+.+|.++ .++..++.+|..+..
T Consensus 74 ------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 74 ------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp ------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred ------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 24679999999999999999999999998743 35889999999877 478889999988743
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 367 QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 367 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
.++++.|+.++.+. ++.++..|+.+|..+.. ..+++.|..++.+.++.++..|..+|.
T Consensus 137 ---------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp ---------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45789999999865 59999999999999832 235678888899999999999999998
Q ss_pred HHH
Q 012677 447 RLN 449 (458)
Q Consensus 447 ~l~ 449 (458)
.+.
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 765
No 88
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.7e-11 Score=90.60 Aligned_cols=53 Identities=21% Similarity=0.417 Sum_probs=45.0
Q ss_pred CCCCCccccccccccccCCccC---CCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 74 LGLPYEFRCPISGEIMTDPVVL---ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l---~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
....++..|+||++.+.++..+ +|||.||..||.+|+.. ..+||+||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 3456778999999999888665 99999999999999986 45899999998653
No 89
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.21 E-value=5.5e-12 Score=87.41 Aligned_cols=47 Identities=32% Similarity=0.496 Sum_probs=41.1
Q ss_pred CccccccccccccC----CccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 78 YEFRCPISGEIMTD----PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 78 ~~~~C~ic~~~~~~----p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
++..|+||++.+.+ ++.++|||.||..||.+|+... .+||+||.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 45679999999976 7778999999999999999864 78999998874
No 90
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=3.2e-12 Score=88.72 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=41.2
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.+++.|+||++.+.+|++++|||+||+.||.+| ...||+||..+..+
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 467889999999999999999999999999773 45799999998754
No 91
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.21 E-value=6.4e-12 Score=87.05 Aligned_cols=49 Identities=24% Similarity=0.578 Sum_probs=42.1
Q ss_pred CCCccccccccccccC---CccCC-CcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 76 LPYEFRCPISGEIMTD---PVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~---p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
+.++..|+||++.+.+ ++.++ |||.||..||.+|+.. ..+||.||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 3456789999999987 77787 9999999999999985 668999998764
No 92
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.21 E-value=7.9e-12 Score=96.28 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=43.4
Q ss_pred CCCccccccccccccC---CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMTD---PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~---p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..++..|+||++.+.+ ++.++|||.||..||.+|+.. +.+||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 3466789999999887 778899999999999999985 5689999998864
No 93
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20 E-value=7.4e-12 Score=90.90 Aligned_cols=48 Identities=31% Similarity=0.560 Sum_probs=42.2
Q ss_pred CccccccccccccCC-ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDP-VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p-~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
++..||||++.+.+| +.++|||.||..|+.+|+.. ..+||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 456799999999997 67899999999999999985 5689999998864
No 94
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=1.7e-11 Score=89.24 Aligned_cols=51 Identities=27% Similarity=0.505 Sum_probs=42.8
Q ss_pred CCCcccccccccccc---CCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 76 LPYEFRCPISGEIMT---DPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~---~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
..+...|+||++.+. +++.++|||.||..||.+|+.. ..+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 456678999999884 4577899999999999999986 45799999998653
No 95
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=4.3e-12 Score=92.77 Aligned_cols=52 Identities=29% Similarity=0.561 Sum_probs=45.8
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
....+.+.|+||++.+.+ +.++|||.||..||.+|+. ...+||.||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCC
Confidence 346678899999999999 8899999999999999998 467899999998754
No 96
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.17 E-value=9.3e-10 Score=97.90 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=149.6
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.....+++.|. .+..+|..|+..|..+.. .+.++.|+.+|.+. +..++..|+.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~----~~~vr~~a~~~L~~~~~--- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDE----DAWVRRAAADALGQIGD--- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCC---
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCC----CHHHHHHHHHHHHhhCC---
Confidence 46788999995 668889999998876542 36789999999864 88999999999987642
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
. ..++.|+.+|.++++.+|..|+.+|..+.. ..+++.|+.+|.++++.++..|+.+|..+..
T Consensus 75 -------~-~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 75 -------E-RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp -------G-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred -------H-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 1 378999999999999999999999998732 4589999999999999999999999998842
Q ss_pred cccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHH
Q 012677 327 LLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYN 404 (458)
Q Consensus 327 ~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 404 (458)
.+.++.|+.++.++ .++..++.+|..+.. ..+++.|..++.+. ++.++..|..+|..
T Consensus 137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLET 195 (201)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 46889999999877 578889999998832 23578889999865 49999999999987
Q ss_pred Hhc
Q 012677 405 ICF 407 (458)
Q Consensus 405 L~~ 407 (458)
|..
T Consensus 196 l~~ 198 (201)
T 3ltj_A 196 HKS 198 (201)
T ss_dssp CC-
T ss_pred HHh
Confidence 643
No 97
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.3e-11 Score=91.41 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=43.3
Q ss_pred CCCccccccccccccCC---ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMTDP---VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p---~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..+...|+||++.+.++ +.++|||.||..||.+|+.. +.+||+||..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 34567899999999887 66899999999999999986 5689999998864
No 98
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.12 E-value=2.8e-09 Score=99.98 Aligned_cols=196 Identities=9% Similarity=0.008 Sum_probs=150.1
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
.+.++.|+..|.+. +..++..|+.+|.++.. .+.++.|+.+|.+++..+|..|+.+|..+.....
T Consensus 22 ~~~i~~L~~~L~~~----~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 22 KLNDDELFRLLDDH----NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp TSCHHHHHHHTTCS----SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HhhHHHHHHHHHcC----CHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 57899999999874 88999999999988762 1378889999999999999999999998864322
Q ss_pred chhHhhccCchHHHHH-HhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 289 NKLIIGKLGAMTPLID-LLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
... ..++.|.. +++++++.++..++.+|.++...... ....+++.|+.++.++ .++..++.+|.++..
T Consensus 87 ~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 87 CED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp THH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred cch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 111 13344442 45667899999999999998643321 1235789999999887 577888888887743
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHH
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGIL 445 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L 445 (458)
.++++.|+.++.+. +..++..|+++|..+.... ..+++.|..++.+.++.++..|+.+|
T Consensus 158 ----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDN----------SDIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp -----------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCC----------HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCc----------HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 35899999999965 4899999999999985332 23567788888888888999999988
Q ss_pred HHHH
Q 012677 446 ERLN 449 (458)
Q Consensus 446 ~~l~ 449 (458)
..+.
T Consensus 217 ~~~~ 220 (280)
T 1oyz_A 217 SYRK 220 (280)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 8775
No 99
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.12 E-value=4.1e-11 Score=96.62 Aligned_cols=48 Identities=19% Similarity=0.382 Sum_probs=40.8
Q ss_pred ccccccccccccCCc------------------cCCCcccccHHHHHHHHh----cCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPV------------------VLANGQTFDRPCIQRWLD----EGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~------------------~l~cgh~fc~~ci~~~~~----~~~~~CP~c~~~l~~ 126 (458)
+..||||++.|.+|+ .++|||.||..||.+|+. ....+||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 457999999998875 679999999999999995 235689999998864
No 100
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.10 E-value=2.2e-11 Score=101.16 Aligned_cols=54 Identities=26% Similarity=0.509 Sum_probs=46.8
Q ss_pred CCccccccccccccCC-------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 012677 77 PYEFRCPISGEIMTDP-------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p-------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~ 131 (458)
.+++.||||++.+.+| +.++|||+||..||.+|+.. ..+||+||+.+....+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccccc
Confidence 4678899999999999 88999999999999999985 558999999988665433
No 101
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.10 E-value=4.9e-10 Score=118.61 Aligned_cols=193 Identities=12% Similarity=0.129 Sum_probs=152.1
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHH-HhhcCChHHHHHHHHHHHHhcccc--cchhH
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLID-LLEEGHPLAMKDVASAIFSLCILL--ENKRR 333 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~--~~~~~ 333 (458)
+.| +++.|++++...|..|+++|.+|+.+...+..+...|+|..++. +|.+.+.+++..|+++|.||+.+. +.+..
T Consensus 36 i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 36 ILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp THH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 556 77889999999999999999999987778888888888887654 788889999999999999999764 56777
Q ss_pred HHhhCcHHHHHHHhccC-----------------------CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhc
Q 012677 334 AVHAGAVRVILRKIMEN-----------------------SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRES 389 (458)
Q Consensus 334 i~~~g~v~~Lv~ll~~~-----------------------~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~ 389 (458)
+++.|++++|..++... ++.+.++.+|++||. +.+....+...|+++.|+..|.+.
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 99999999999998531 133567889999987 777888888999999999998643
Q ss_pred --CChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHh--hhCCHHHHHHHHHHHHHHHhh
Q 012677 390 --TCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA--ENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 390 --~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll--~~~~~~~~~~A~~~L~~l~~~ 451 (458)
...+++..|+.+|++|+..+..-... +.+.+....+..++ ..++...+..++++|+|+...
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~-i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQA-ITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTS 259 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHH-HHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHH-HHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhh
Confidence 23689999999999999988765434 44455444333332 344555678899999998643
No 102
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.09 E-value=7.2e-09 Score=112.73 Aligned_cols=273 Identities=14% Similarity=0.066 Sum_probs=190.2
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhh---hccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFG---ESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.++.|++.+. ++...+..|+..|..++...+..-..-. .....++.|+..+++. +..++..|+.+|.++...
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~----~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS----SPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS----SHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHhc
Confidence 5777888885 4567888899999988876443311100 0024567777777753 889999999999988755
Q ss_pred chhhh-hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 245 DENKR-LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 245 ~~~~~-~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
..... .... .+++.|+.++..++.++|..++.+|..|+......-.-.-.+.++.++.++.+.++.++..|+..+..
T Consensus 205 ~~~~~~~~~~--~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 205 RTQALMLHID--SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLT 282 (852)
T ss_dssp TCHHHHTSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 33211 1111 37788888888999999999999999998754321110113578888888888899999999999999
Q ss_pred hcccccchhHHH--hhCcHHHHHHHh-----------cc-----------C--CcHHHHHHHHHHhcCCHHHHHHHHhcC
Q 012677 324 LCILLENKRRAV--HAGAVRVILRKI-----------ME-----------N--SLVDELLAILAMLSSHQDAIEEIGELG 377 (458)
Q Consensus 324 L~~~~~~~~~i~--~~g~v~~Lv~ll-----------~~-----------~--~~~~~a~~~L~~La~~~~~~~~i~~~g 377 (458)
++.....+..+- -...++.|+..| .+ . .++..+..+|..|+.... ..+.. .
T Consensus 283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~-~ 359 (852)
T 4fdd_A 283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP-H 359 (852)
T ss_dssp HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH-H
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH-H
Confidence 987654332221 125677777777 22 1 346778888888876321 11211 2
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
.++.+..++.+. +..+++.|+.+|.+|+.+........+ ...++.|+.++.+.++.++..|+++|.+++....
T Consensus 360 l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 360 ILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 467777777754 599999999999999987754332222 4678899999999999999999999999997543
No 103
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.08 E-value=6.8e-10 Score=120.82 Aligned_cols=271 Identities=10% Similarity=0.040 Sum_probs=186.6
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.++.+++.+. .+..+|..|+..|..+....+....... .+.++.|+.++.+. +..++..|+.+|..++.....
T Consensus 175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~--~~~l~~l~~~~~d~----~~~vr~~a~~~L~~l~~~~~~ 248 (852)
T 4fdd_A 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALAGDE----EPEVRKNVCRALVMLLEVRMD 248 (852)
T ss_dssp HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH--HHHHHHHHHHHTCC----CHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHhCHH
Confidence 5666666664 4578899999999877654332211111 25677888877764 889999999999999875442
Q ss_pred h-hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHh-----------hc-----
Q 012677 248 K-RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLL-----------EE----- 308 (458)
Q Consensus 248 ~-~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL-----------~~----- 308 (458)
. ..... ++++.++.++++.+..++..|+.++..++.....+..+.. ...++.|+..+ .+
T Consensus 249 ~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 249 RLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp HHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 2 11222 3778888888888999999999999999875433332222 24566666666 22
Q ss_pred ------CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHH
Q 012677 309 ------GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIP 380 (458)
Q Consensus 309 ------~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~ 380 (458)
.+..++..|+.+|..|+..... .++ ..+++.+.+++.++ ..++.|+.+|..++......-.-.-.+.++
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~ 403 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIP 403 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 1234688899999988864431 122 24677788888776 578889999999998433211112235688
Q ss_pred HHHHHHhhcCChhHHhHHHHHHHHHhccCchh-HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 381 CLLRIIRESTCERNKENCAAILYNICFTDRTR-TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 381 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
.|+.++.+. ++.++..|+++|.+++...... ..... ...++.|++.+.+.++.++..|+++|.++++...
T Consensus 404 ~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 404 HLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 899999865 5999999999999998743211 11112 3567888888888899999999999999997654
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.05 E-value=5.9e-10 Score=117.97 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=148.1
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHH-HHHHHhcCCHHHHHHHHHHHHHhhccC-
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPL-LIDSVRTGTIETRRNAAAALFSLSALD- 287 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~-Lv~lL~~~~~~~~~~a~~~L~~Ls~~~- 287 (458)
+.|.++++.|+++ ++..+..|+.+|.||+.++..+..+...+ ++.. |..+|..++.++|..|+++|.||+...
T Consensus 34 ~~i~Pll~~L~S~----~~~~r~~A~~al~~l~~~~~~~~l~~~~~-~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 34 DKILPVLKDLKSP----DAKSRTTAAGAIANIVQDAKCRKLLLREQ-VVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HTTHHHHHHHSSS----CCSHHHHHHHHHHHHTTSHHHHHHHHHTT-HHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHcCCC----CHHHHHHHHHHHHHHHcCcHHHHHHHHcC-CHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 3466677888875 88999999999999999888889888886 5554 556788899999999999999999764
Q ss_pred -cchhHhhccCchHHHHHHhhcCC---------------------hHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHH
Q 012677 288 -SNKLIIGKLGAMTPLIDLLEEGH---------------------PLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVIL 344 (458)
Q Consensus 288 -~~~~~i~~~g~i~~Lv~lL~~~~---------------------~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv 344 (458)
+.+..+.+.|++++|..+|+... ..+..+++.+|++|+...+ ....+...|+++.|+
T Consensus 109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHH
T ss_pred chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHH
Confidence 55788999999999999985310 1234567889999997655 455677889999999
Q ss_pred HHhccC-----CcHHHHHHHHHHhcC-CHHHHHHHHhcCCH---HHHHHHHhhcCChhHHhHHHHHHHHHh
Q 012677 345 RKIMEN-----SLVDELLAILAMLSS-HQDAIEEIGELGAI---PCLLRIIRESTCERNKENCAAILYNIC 406 (458)
Q Consensus 345 ~ll~~~-----~~~~~a~~~L~~La~-~~~~~~~i~~~g~i---~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 406 (458)
.+|.+. +++..++.+|+.|+. +++..+.+.+.|.. ..+..+.. + +...+..++++|.|+.
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHHHHHHHHhHh
Confidence 998543 478889999999999 67788888887753 23333333 3 3566788999999985
No 105
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.04 E-value=3e-11 Score=89.00 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=41.2
Q ss_pred CCCccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
+.+++.|+||++.+.+|+.+||||. ||..|+.+| ..||+||.++..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3456789999999999999999999 999999988 579999998864
No 106
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.7e-10 Score=86.61 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=40.3
Q ss_pred CccccccccccccC--------------CccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 78 YEFRCPISGEIMTD--------------PVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 78 ~~~~C~ic~~~~~~--------------p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
++..|+||++.+.+ ++.+ +|||.||..||.+|+.. +.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 45679999999876 4455 59999999999999986 56899999987643
No 107
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.98 E-value=2.2e-10 Score=109.96 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=44.5
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
...|+||++.+.+|+.++|||.||..|+..|+.....+||.||.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4789999999999999999999999999999985567899999998754
No 108
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2.9e-10 Score=84.03 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=40.3
Q ss_pred CCCccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
+.+.+.|+||++.+.+|+.+||||. ||..|+.. ...||+||.++...
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 3456789999999999999999999 99999964 35799999998653
No 109
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.93 E-value=3.5e-08 Score=102.78 Aligned_cols=255 Identities=13% Similarity=0.121 Sum_probs=182.4
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+..+++.++ .+...|+.+...+..++..+++.. .-++..|.+-|.+. ++.++..|+.+|.++...
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~------~l~~n~l~kdL~~~----n~~ir~~AL~~L~~i~~~--- 116 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA------IMAVNSFVKDCEDP----NPLIRALAVRTMGCIRVD--- 116 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH------HTTHHHHGGGSSSS----SHHHHHHHHHHHHTCCSG---
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH------HHHHHHHHHHcCCC----CHHHHHHHHHHHHcCChH---
Confidence 4556777774 567778888888888877544432 13466777777764 899999999999988622
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
.+.. .+++.+..+|.+.++.+|..|+.+|..+..... ..+.+.+.++.|..+|.+.++.++..|+.+|..++..
T Consensus 117 --~~~~--~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 117 --KITE--YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp --GGHH--HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred --HHHH--HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 2222 256778999999999999999999999987432 2333367899999999999999999999999999886
Q ss_pred ccch-hHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 328 LENK-RRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 328 ~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
.... ......+.+..|+..+.+. ..+...+.+|..++. .++.... .++.+..++++. +..+...|++++.
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~-----~l~~l~~~l~~~-~~~V~~ea~~~i~ 264 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQS-----ICERVTPRLSHA-NSAVVLSAVKVLM 264 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHH-----HHHHHTTCSCSS-TTHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHH-----HHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 6532 1112235677777777655 356778888888876 3333322 356777777754 5899999999999
Q ss_pred HHhcc---CchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 404 NICFT---DRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 404 ~L~~~---~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.+... ++...+.++ ....+.|+.++. .++.++..|...|..+...
T Consensus 265 ~l~~~~~~~~~~~~~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 265 KFLELLPKDSDYYNMLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HSCCSCCBTTBSHHHHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCHHHHHHHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 98752 333333333 345577776654 7788999999998888764
No 110
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.90 E-value=7.3e-10 Score=78.91 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=42.7
Q ss_pred CCccccccccccccCCccC--CCccc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTDPVVL--ANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l--~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.++..|+||++...+++.+ ||||. ||..|+.+|+.. ...||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 3556799999999999987 99999 899999999985 5689999998853
No 111
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.90 E-value=8.6e-10 Score=86.71 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=40.2
Q ss_pred CccccccccccccCC------------------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDP------------------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p------------------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
++..|+||++.|.++ +.++|||.||..||.+|+.. +.+||+||..+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCccee
Confidence 345799999998876 23689999999999999985 6789999998653
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=2.5e-10 Score=94.69 Aligned_cols=56 Identities=25% Similarity=0.449 Sum_probs=48.4
Q ss_pred CCCccccccccccccCC-------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 76 LPYEFRCPISGEIMTDP-------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p-------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
..+...|+||++.+.+| +.++|||.||..||.+|+.. ..+||+||..+....+.+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 35678899999999887 77899999999999999986 5689999999987776554
No 113
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.89 E-value=9.4e-08 Score=95.76 Aligned_cols=274 Identities=9% Similarity=0.077 Sum_probs=184.8
Q ss_pred hhhhhHHhhc-C--CcHHHHHHHHHHHHHHhhC-chhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 169 HLNSLLEKMS-S--SLSDQKEAAKELRLLTKRM-PLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 169 ~l~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.++.|++.+. + +...+..|+..|..++.+. +..-..... ..++.++..|.+. ..+..++..|+.++.++...
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKE--EPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHH
Confidence 5777888885 4 6778889999999998754 222222222 4677788888763 11578999999999886532
Q ss_pred ch-hh-hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcch-hHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 245 DE-NK-RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK-LIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 245 ~~-~~-~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
-. +- ...... .+++.|...+.+++.+++..++.+|..++...... ......+.++.++..+++.++.++..|+..+
T Consensus 205 ~~~~~~~~~~~~-~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 205 TKANFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (462)
T ss_dssp THHHHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHhhhhhHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 11 10 011111 14666666777789999999999999998654221 1111116788888888888999999999999
Q ss_pred HHhccccc------------------chhHHHh---hCcHHHHHHHhccC---------CcHHHHHHHHHHhcCCHHHHH
Q 012677 322 FSLCILLE------------------NKRRAVH---AGAVRVILRKIMEN---------SLVDELLAILAMLSSHQDAIE 371 (458)
Q Consensus 322 ~~L~~~~~------------------~~~~i~~---~g~v~~Lv~ll~~~---------~~~~~a~~~L~~La~~~~~~~ 371 (458)
..++.... ....+++ ..++|.|++.|.+. .++..|+.+|..|+..-. +
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~ 361 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D 361 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--H
Confidence 98876531 1111222 34677777777431 467788888888876211 1
Q ss_pred HHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc-hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 372 EIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR-TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
.+. ...++.+...+.+. +..+++.|+.+|..++.+.. ......+ ...++.|+.++.+.++.++..|+++|.+++.
T Consensus 362 ~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 362 DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp THH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 222 23456666777754 58999999999999998653 2111222 4678899999999999999999999999997
Q ss_pred hHh
Q 012677 451 AAL 453 (458)
Q Consensus 451 ~~~ 453 (458)
.-.
T Consensus 438 ~~~ 440 (462)
T 1ibr_B 438 LLP 440 (462)
T ss_dssp HGG
T ss_pred hcc
Confidence 654
No 114
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.88 E-value=7.7e-10 Score=78.52 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=42.1
Q ss_pred CccccccccccccCCccC--CCccc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVL--ANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l--~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
....|+||++...|++++ ||||. ||..|+.+|+.. ...||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 456799999999999887 99998 999999999975 4689999998853
No 115
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=6.4e-10 Score=86.12 Aligned_cols=66 Identities=14% Similarity=0.266 Sum_probs=47.4
Q ss_pred CccccccccccccCCccC---CCcccccHHHHHHHHhc----C---CCCCCC--CCcc--CCCCCCcccHHHHHHHHHHH
Q 012677 78 YEFRCPISGEIMTDPVVL---ANGQTFDRPCIQRWLDE----G---NRTCPQ--TRQV--LSHTVLIPNHLVREMISQWC 143 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l---~cgh~fc~~ci~~~~~~----~---~~~CP~--c~~~--l~~~~~~~n~~l~~~i~~~~ 143 (458)
+.+.||||++.+.+|+.+ +|||.||+.|+.+|+.. + ...||. |+.. ++...+. +.....++++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~-~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE-CMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH-HHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH-HHCCHHHHHHHH
Confidence 467899999999998764 79999999999999863 2 248999 9988 5543321 222245555555
Q ss_pred H
Q 012677 144 K 144 (458)
Q Consensus 144 ~ 144 (458)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 116
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.82 E-value=1.4e-07 Score=97.55 Aligned_cols=262 Identities=11% Similarity=0.059 Sum_probs=180.1
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
++.|...+. .+..+|..|...|..++...+.. .+.. ..++.+..+..+. +...+..|+.+|..++..-..
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~~~~--~l~~~l~~l~~~~----~~~~R~~a~~~l~~~~~~~~~- 159 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPS--DLEA--HFVPLVKRLAGGD----WFTSRTSACGLFSVCYPRVSS- 159 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HHHH--THHHHHHHHHTCS----SHHHHHHHGGGHHHHTTTSCH-
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--HHHH--HHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHhcCH-
Confidence 333433333 45788999999999998765432 1222 3455565665543 678888898888888755432
Q ss_pred hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc
Q 012677 249 RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 328 (458)
.... .++|.+..++..++..+|..|+.+|..++..-... ......++.|..+++++++.++..|+.+|..++..-
T Consensus 160 -~~~~--~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 160 -AVKA--ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp -HHHH--HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS
T ss_pred -HHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC
Confidence 1222 37788888889999999999999999998653322 223567888999998889999999999999987643
Q ss_pred cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHh
Q 012677 329 ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNIC 406 (458)
Q Consensus 329 ~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 406 (458)
+.. .....++|.+.+++.++ .++..++.+|..++..-.. .......++.++.++.+. ++.++..|+.+|..++
T Consensus 235 ~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 235 PQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFC 309 (588)
T ss_dssp CHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHH
Confidence 321 23345788888888877 4688899999988762111 112334688999999865 4899999999999998
Q ss_pred ccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 407 FTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 407 ~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
..-+...+........++.+..++.+.++.++..++++|..++.
T Consensus 310 ~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp HTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHH
T ss_pred HHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 76543211101113456677777777777788777777776654
No 117
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.78 E-value=1.9e-07 Score=97.14 Aligned_cols=266 Identities=11% Similarity=0.043 Sum_probs=175.5
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.++.+.+.+. .++.+|..|+.++..+...+++. +.+ .+.++.|..+|.+. ++.++..|+.+|..++.+.+.
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~-~~~~~~l~~lL~d~----d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VED-QGFLDSLRDLIADS----NPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHH-HHHHHHHHHTTSCS----CHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---ccc-ccHHHHHHHHhCCC----ChhHHHHHHHHHHHHHhhCCC
Confidence 3445666664 56889999999999998865542 223 47789999999874 899999999999999877643
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
...+.-..+.++.|+..+...++-.+...+.+|..+...++.. ....++.+..+|++.++.++..|++++.++...
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~ 269 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLEL 269 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCS
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc
Confidence 2111111124566777777778888887778777776433211 134677888888888999999999999998742
Q ss_pred ---ccchhHHHhhCcHHHHHHHhccC-CcHHHHHHHHHHhcC-C------------------HHHHHHHH-------hcC
Q 012677 328 ---LENKRRAVHAGAVRVILRKIMEN-SLVDELLAILAMLSS-H------------------QDAIEEIG-------ELG 377 (458)
Q Consensus 328 ---~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~La~-~------------------~~~~~~i~-------~~g 377 (458)
++.....+-..+.++|+.++.++ .++..++.+|..++. + ...|...+ ...
T Consensus 270 ~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~ 349 (591)
T 2vgl_B 270 LPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQA 349 (591)
T ss_dssp CCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChh
Confidence 22222222344567777766533 566677777776653 1 11122221 122
Q ss_pred C----HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 378 A----IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 378 ~----i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
. ++.|.+++.+. +...+..+++++..++...+... ...++.|+.++....+.+...+...+..+-+..+
T Consensus 350 nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~------~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 350 NIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSA------ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp THHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHH------HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 2 34444555544 58999999999999998765322 3467888888887777777777777777755433
No 118
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=5.3e-09 Score=75.27 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=40.2
Q ss_pred CCCccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..+...|+||++...+++.+||||. ||..|+.. ...||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 4457789999999999999999999 99999983 3579999998865
No 119
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.75 E-value=1.2e-09 Score=81.33 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=40.0
Q ss_pred CCccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.++..|+||++.+.+|+.+||||. ||..|+..|. .||+||.++...
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 345679999999999999999999 9999998763 799999998653
No 120
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.72 E-value=1.5e-06 Score=89.89 Aligned_cols=220 Identities=10% Similarity=0.047 Sum_probs=120.8
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+..++..+. ++...|..|+..|..++..-...+ .. ...++.|...+ + .+.+++..++..|..+...-..
T Consensus 11 ~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~--~~--~~l~~~L~~~~-d----~~~~vr~~~~~~L~~~~~~~~~ 81 (588)
T 1b3u_A 11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALGVER--TR--SELLPFLTDTI-Y----DEDEVLLALAEQLGTFTTLVGG 81 (588)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH--HH--HTHHHHHHHTC-C----CCHHHHHHHHHHHTTCSGGGTS
T ss_pred cHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHH--HH--HHHHHHHHHhc-C----CcHHHHHHHHHHHHHHHhccCc
Confidence 4777888884 567888889888887765321111 11 23556666554 2 3678888888888877653211
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
..... ..++.|..++.+++..+|..|+.+|.+++...... . ...-.++.+..+..+++...|..|+.+|..++..
T Consensus 82 -~~~~~--~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~-~-~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~ 156 (588)
T 1b3u_A 82 -PEYVH--CLLPPLESLATVEETVVRDKAVESLRAISHEHSPS-D-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR 156 (588)
T ss_dssp -GGGGG--GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH-H-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTT
T ss_pred -HHHHH--HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH-H-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 11222 36777777777788899999999999887643221 1 1112344444444445556666666666665543
Q ss_pred ccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHH
Q 012677 328 LENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNI 405 (458)
Q Consensus 328 ~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 405 (458)
-... .....++.+..++.++ .++..++.+|..++..-... ......++.|..++.+. +..++..|+.+|..+
T Consensus 157 ~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l 230 (588)
T 1b3u_A 157 VSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDE-QDSVRLLAVEACVNI 230 (588)
T ss_dssp SCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCS-CHHHHTTHHHHHHHH
T ss_pred cCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHH
Confidence 2211 1223455555555544 35555666666554311110 11123344555555432 255555555555555
Q ss_pred hcc
Q 012677 406 CFT 408 (458)
Q Consensus 406 ~~~ 408 (458)
+..
T Consensus 231 ~~~ 233 (588)
T 1b3u_A 231 AQL 233 (588)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 121
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.2e-08 Score=75.75 Aligned_cols=51 Identities=16% Similarity=0.364 Sum_probs=41.9
Q ss_pred CCccccccccccc--cCCccCCCc-----ccccHHHHHHHHhcC-CCCCCCCCccCCCC
Q 012677 77 PYEFRCPISGEIM--TDPVVLANG-----QTFDRPCIQRWLDEG-NRTCPQTRQVLSHT 127 (458)
Q Consensus 77 ~~~~~C~ic~~~~--~~p~~l~cg-----h~fc~~ci~~~~~~~-~~~CP~c~~~l~~~ 127 (458)
.++..|+||++.+ .+++++||+ |.||..||.+|+... ..+||+|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4556899999876 468888996 999999999999864 35899999998653
No 122
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.64 E-value=3.6e-09 Score=84.29 Aligned_cols=47 Identities=23% Similarity=0.488 Sum_probs=0.4
Q ss_pred ccccccccccccCCc-----------------c-CCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPV-----------------V-LANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~-----------------~-l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
+..|+||++.|.+|. . ++|||.||..||.+|+.. +.+||.||.++..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 112 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeee
Confidence 357999999987742 2 489999999999999986 6689999998643
No 123
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.62 E-value=1e-06 Score=92.03 Aligned_cols=250 Identities=14% Similarity=0.071 Sum_probs=141.6
Q ss_pred hhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhh
Q 012677 172 SLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRL 250 (458)
Q Consensus 172 ~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 250 (458)
..++.+ +.+.+.++-+.-.+..++..+++... -++..|.+-|.+. ++.++..|+.+|.++... .
T Consensus 74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~------l~in~l~kDL~~~----n~~vr~lAL~~L~~i~~~-----~ 138 (618)
T 1w63_A 74 ECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL------LMTNCIKNDLNHS----TQFVQGLALCTLGCMGSS-----E 138 (618)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH------HHHHHHHHHHSCS----SSHHHHHHHHHHHHHCCH-----H
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH------HHHHHHHHhcCCC----CHhHHHHHHHHHHhcCCH-----H
Confidence 344444 34455565555566666654433211 1244555556553 777778888888777631 2
Q ss_pred hhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccc
Q 012677 251 VAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLEN 330 (458)
Q Consensus 251 i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~ 330 (458)
+.. .+++.+..+|.+.++.+|..|+.++.++...... +. .+.++.|..+|.+.++.++..|+.+|..++..+..
T Consensus 139 ~~~--~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 139 MCR--DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHH--HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 333 2667777778888888888888888877654321 11 25666777777777778888888888887765432
Q ss_pred hhHHHhhCcHHHHHHHhcc-----------------CCcHHHHHHHHHHhcC-CHHHHHHH-------------------
Q 012677 331 KRRAVHAGAVRVILRKIME-----------------NSLVDELLAILAMLSS-HQDAIEEI------------------- 373 (458)
Q Consensus 331 ~~~i~~~g~v~~Lv~ll~~-----------------~~~~~~a~~~L~~La~-~~~~~~~i------------------- 373 (458)
..... ...++.|+++|.+ +..+...+.+|..++. +++....+
T Consensus 213 ~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 213 MLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHH
Confidence 11111 2455555555442 1234445555555554 22211110
Q ss_pred ----------H--------hcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCH
Q 012677 374 ----------G--------ELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTS 435 (458)
Q Consensus 374 ----------~--------~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 435 (458)
. ...++..|..++.++ ++.++..|+.+|..++...+. ++ ......++..+.+.+.
T Consensus 292 aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~----~~--~~~~~~i~~~l~d~d~ 364 (618)
T 1w63_A 292 AILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHN----AV--QRHRSTIVDCLKDLDV 364 (618)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHH----HH--GGGHHHHHHGGGSSCH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHH----HH--HHHHHHHHHHccCCCh
Confidence 0 012456777777754 478888888888888765432 12 1233445555555566
Q ss_pred HHHHHHHHHHHHHHh
Q 012677 436 RAKRKANGILERLNK 450 (458)
Q Consensus 436 ~~~~~A~~~L~~l~~ 450 (458)
.++.+|..+|..++.
T Consensus 365 ~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 365 SIKRRAMELSFALVN 379 (618)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666666654
No 124
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.59 E-value=6.4e-09 Score=99.43 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=41.4
Q ss_pred CCCccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
+.+++.|+||++.+.+|+.+||||. ||+.|+..| ..||.||.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 4567899999999999999999999 999999987 479999998864
No 125
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.58 E-value=7.7e-07 Score=96.49 Aligned_cols=261 Identities=11% Similarity=0.088 Sum_probs=173.7
Q ss_pred CCcHHHHHHHHHHHHHHhhCc-hhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh---hhhhhcC
Q 012677 179 SSLSDQKEAAKELRLLTKRMP-LFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN---KRLVAEN 254 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~---~~~i~~~ 254 (458)
.+...|..|+..+..++.... ..-..... ..++.|+..+.+. ++.++..++++|..++..-.. ......
T Consensus 381 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~- 453 (861)
T 2bpt_A 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQ----SLQVKETTAWCIGRIADSVAESIDPQQHLP- 453 (861)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCS----CHHHHHHHHHHHHHHHHHHGGGSCTTTTHH-
T ss_pred CChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCC----cHHHHHHHHHHHHHHHHHhhhhcCCHHHHH-
Confidence 456788889999998886532 22122222 4678888888764 789999999999988754221 112222
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--chhHhhc--cCchHHHHHHhhcC--ChHHHHHHHHHHHHhcccc
Q 012677 255 PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKLIIGK--LGAMTPLIDLLEEG--HPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 255 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~ 328 (458)
.++|.|+..++.. ..++..|+++|.+++..-. ....+.. ...++.|+.++.+. ++.++..++.+|..+....
T Consensus 454 -~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 454 -GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp -HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 2678888888775 8999999999999876421 0111211 45678888888754 3789999999999998755
Q ss_pred cchhHHHhhCcHHHHHHHhccC-----------------CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcC
Q 012677 329 ENKRRAVHAGAVRVILRKIMEN-----------------SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIREST 390 (458)
Q Consensus 329 ~~~~~i~~~g~v~~Lv~ll~~~-----------------~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~ 390 (458)
.....-.-...++.+++.+.+. .++..++.+|..++. .+..-.... ...++.++.++....
T Consensus 532 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~ 610 (861)
T 2bpt_A 532 TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKD 610 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccCC
Confidence 4332212224677777766521 345667888887765 222101111 134677778887543
Q ss_pred Ch-hHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 391 CE-RNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 391 ~~-~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
. .+++.++.++..++...+......+ ...++.|...+.+.++.++..|..++..+++..
T Consensus 611 -~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 611 -SAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp -GGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred -CCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 4 8999999999999876554443444 347788888887777889999999998887654
No 126
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.55 E-value=2.2e-07 Score=104.99 Aligned_cols=271 Identities=12% Similarity=0.068 Sum_probs=184.3
Q ss_pred hhhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..+..+++.+ +.|...|..|...|.+........-..-.. ...++.|++.|.+. +..++..|+.+|.+++..-.
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~-~~il~~Ll~~L~d~----~~~vR~~A~~~L~~l~~~~~ 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE-RKVVKMILKLLEDK----NGEVQNLAVKCLGPLVSKVK 80 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH-HHHHHHHHHHTTCS----SHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHH-HHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhCC
Confidence 3577788887 567889999998888765432110000011 24577788888753 88999999999999886533
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcch------hHhhccCchHHHHHHhh-cCChHHHHHHHH
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK------LIIGKLGAMTPLIDLLE-EGHPLAMKDVAS 319 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~------~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~ 319 (458)
. .... .+++.|+..|.+++..+|..|+.+|..++..-... ..-.-...+|.|+..+. ++++.++..|+.
T Consensus 81 ~--~~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~ 156 (1230)
T 1u6g_C 81 E--YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALD 156 (1230)
T ss_dssp H--HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred H--HHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 2 1222 26777888888888899999999999887543221 01112457899999998 478899999999
Q ss_pred HHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhH
Q 012677 320 AIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 320 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 397 (458)
+|..++........-.-...++.|+..|.++ .++..|+.+|..++...... + -...++.|+..|.+..+...+..
T Consensus 157 ~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~ 233 (1230)
T 1u6g_C 157 IMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRT 233 (1230)
T ss_dssp HHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTT
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHH
Confidence 9999985322111111245677777777766 57888999999998732211 1 22358888888886544567788
Q ss_pred HHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 398 CAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 398 a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
++.++..++...+......+ ...++.+...+.+.++.+++.|..++..+++..
T Consensus 234 a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 234 YIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence 89999988876543322211 356778888888778889999999999888754
No 127
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.49 E-value=1.6e-05 Score=83.02 Aligned_cols=248 Identities=10% Similarity=0.060 Sum_probs=171.3
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
++.+.+.+. .++.+|..|+.++..+...+++.. + +.++.|..+|.+. |+.++..|+.+|..++.+.+..
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~--~~~~~l~~lL~D~----d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----E--MFLPATKNLLNEK----NHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----G--GGGGGTTTSTTCC----CHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----H--HHHHHHHHHhCCC----CHhHHHHHHHHHHHHHHhChHH
Confidence 455555553 668899999999999998766432 2 5677778888764 8999999999999998765432
Q ss_pred hhhhcCCCCHHHHHHHHhc---------------CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc-----
Q 012677 249 RLVAENPLAIPLLIDSVRT---------------GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE----- 308 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~---------------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----- 308 (458)
..... ..+|.++.+|.. .++-.+...+.+|..+...+... ....++.|..++..
T Consensus 214 ~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 214 LAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSK 287 (618)
T ss_dssp HHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSS
T ss_pred HHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhcccccc
Confidence 22223 378888887763 36778888899999988755321 12345566666532
Q ss_pred -CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHH
Q 012677 309 -GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRI 385 (458)
Q Consensus 309 -~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~l 385 (458)
.+..+...|+.++.++...+. +. ..+++.|..++.++ .++..++.+|..++... ..++. .....++.+
T Consensus 288 ~~~~aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~i~~~ 358 (618)
T 1w63_A 288 NVGNAILYETVLTIMDIKSESG----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRSTIVDC 358 (618)
T ss_dssp THHHHHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHHHHHG
T ss_pred chHHHHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHHHHHH
Confidence 245788888999888754321 11 24678888888755 78888999998887631 12222 235677777
Q ss_pred HhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 386 IRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 386 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
+.+. +..++..|+.+|..|+.... ...+ +.-|...+.+.++..++.+...|..++..
T Consensus 359 l~d~-d~~Ir~~alelL~~l~~~~n--v~~i------v~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 359 LKDL-DVSIKRRAMELSFALVNGNN--IRGM------MKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp GGSS-CHHHHHHHHHHHHHHCCSSS--THHH------HHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred ccCC-ChhHHHHHHHHHHHHccccc--HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 7754 48999999999999987542 2222 34555666667788888888888888764
No 128
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.46 E-value=1.3e-06 Score=94.96 Aligned_cols=268 Identities=12% Similarity=0.061 Sum_probs=171.1
Q ss_pred hHHhhc-CCcHHHHHHHHHHHHHHhhCc-hhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh---
Q 012677 173 LLEKMS-SSLSDQKEAAKELRLLTKRMP-LFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN--- 247 (458)
Q Consensus 173 Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~--- 247 (458)
+...+. .+...|..|+..+..++.... ........ ..++.|+..|.+. +..++..|+++|.+++..-..
T Consensus 371 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~d~----~~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMKDP----SVVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHTCS----SHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhCchhcc
Confidence 333443 457788899999998887543 22222233 5788899998864 789999999999998865332
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc------------chhHhhc--cCchHHHHHHhhcC---C
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS------------NKLIIGK--LGAMTPLIDLLEEG---H 310 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~------------~~~~i~~--~g~i~~Lv~lL~~~---~ 310 (458)
...... .+++.|+..|.++ ..++..++++|.+++..-. ....+.. ...++.|+.++... +
T Consensus 445 ~~~~l~--~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~ 521 (876)
T 1qgr_A 445 NDVYLA--PLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQ 521 (876)
T ss_dssp STTTHH--HHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCS
T ss_pred cHHHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcch
Confidence 112222 2677788888774 8899999999999985421 0111211 35677777877654 3
Q ss_pred hHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhcc----------C-------CcHHHHHHHHHHhcCC-H-HHHH
Q 012677 311 PLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME----------N-------SLVDELLAILAMLSSH-Q-DAIE 371 (458)
Q Consensus 311 ~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~----------~-------~~~~~a~~~L~~La~~-~-~~~~ 371 (458)
..++..+..+|..++........-.-...++.+++.+.. . .++..++.+|..++.. + ..-.
T Consensus 522 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 601 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL 601 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh
Confidence 567888888888887644322221223466666665542 1 2345677888888762 2 1111
Q ss_pred HHHhcCCHHHHHHHHhhcCC-hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-CHHHHHHHHHHHHHHH
Q 012677 372 EIGELGAIPCLLRIIRESTC-ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG-TSRAKRKANGILERLN 449 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~A~~~L~~l~ 449 (458)
.+. ...++.|+.++.+..+ ..+++.++.++..++...+......+ ...++.|...+... ++.++..|.+++..+.
T Consensus 602 ~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 602 QIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp TTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 111 2356777788875421 37899999999999875433332333 23667888888776 7889999999999988
Q ss_pred hhH
Q 012677 450 KAA 452 (458)
Q Consensus 450 ~~~ 452 (458)
+..
T Consensus 679 ~~~ 681 (876)
T 1qgr_A 679 RAL 681 (876)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 129
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.46 E-value=7e-06 Score=89.09 Aligned_cols=274 Identities=9% Similarity=0.073 Sum_probs=180.7
Q ss_pred hhhhhHHhhc-C--CcHHHHHHHHHHHHHHhhCc-hhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 169 HLNSLLEKMS-S--SLSDQKEAAKELRLLTKRMP-LFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 169 ~l~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.++.+++.+. + +...|..++..+..++.... ..-.... ...++.+...+.+. +.+..++..|+.+|.++...
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHH--HHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHH
Confidence 5667777774 4 66788889999998887532 1111111 24566677777653 11578899999999887643
Q ss_pred ch-h-hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcch-hHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 245 DE-N-KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK-LIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 245 ~~-~-~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
-. + ....... .+++.+...+...+.+++..++.+|..+....... ........++.++..+.+.++.++..|+..+
T Consensus 205 ~~~~~~~~~~~~-~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l 283 (876)
T 1qgr_A 205 TKANFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp CHHHHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHhHHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 11 1 1111111 25676777777788999999999999988643221 1122236788888888778889999999999
Q ss_pred HHhcccccc----------------h--hHHH---hhCcHHHHHHHhcc-------C--CcHHHHHHHHHHhcCCHHHHH
Q 012677 322 FSLCILLEN----------------K--RRAV---HAGAVRVILRKIME-------N--SLVDELLAILAMLSSHQDAIE 371 (458)
Q Consensus 322 ~~L~~~~~~----------------~--~~i~---~~g~v~~Lv~ll~~-------~--~~~~~a~~~L~~La~~~~~~~ 371 (458)
..++..... + .... -...++.+++.|.. . .++..++.+|..|+..-. .
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~ 361 (876)
T 1qgr_A 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--G
T ss_pred HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--H
Confidence 888754210 0 0011 13467778888742 1 467778888888866321 1
Q ss_pred HHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc-hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 372 EIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR-TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
.++ ...++.+...+.+. +..+++.|+.+|..++.+.. ......+ ...++.|+..+.+.++.++..|+++|.+++.
T Consensus 362 ~~~-~~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 362 DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp GGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 111 12355555666644 58999999999999998664 3232333 4578888998988899999999999999997
Q ss_pred hHh
Q 012677 451 AAL 453 (458)
Q Consensus 451 ~~~ 453 (458)
..+
T Consensus 438 ~~~ 440 (876)
T 1qgr_A 438 LLP 440 (876)
T ss_dssp HCG
T ss_pred hCc
Confidence 643
No 130
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.44 E-value=4.1e-06 Score=90.72 Aligned_cols=271 Identities=13% Similarity=0.094 Sum_probs=175.0
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchh--hhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLF--RALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.++.++..+. .++.+|..++..|..++..-... ..... ...++.|+..+.+ ++.++..|+.+|.+++..-
T Consensus 412 il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~-----~~~v~~~a~~al~~l~~~~ 484 (861)
T 2bpt_A 412 ALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQD-----HPKVATNCSWTIINLVEQL 484 (861)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhcc-----ChHHHHHHHHHHHHHHHhc
Confidence 4455555554 45677888888888887642211 01111 2457777877764 4788999999998887542
Q ss_pred h-----hhhhhhcCCCCHHHHHHHHhcCC--HHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC---------
Q 012677 246 E-----NKRLVAENPLAIPLLIDSVRTGT--IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG--------- 309 (458)
Q Consensus 246 ~-----~~~~i~~~~~~i~~Lv~lL~~~~--~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--------- 309 (458)
. .-..... .+++.|+.++.+.+ ..+|..++.+|..+.........-.-...++.++..+...
T Consensus 485 ~~~~~~~l~~~~~--~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~ 562 (861)
T 2bpt_A 485 AEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562 (861)
T ss_dssp SSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred ccccchhhHHHHH--HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 1 1112222 26777888887543 6889999999999986543321111124567777766531
Q ss_pred ------ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCH--HHHHHHHhcCC
Q 012677 310 ------HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQ--DAIEEIGELGA 378 (458)
Q Consensus 310 ------~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~--~~~~~i~~~g~ 378 (458)
...++..++.+|.+++..-.....-.-...++.++.++.+. .+++.++.++..++..- +....+ ...
T Consensus 563 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i 640 (861)
T 2bpt_A 563 LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETF 640 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHH
Confidence 34567788899988876443211111235777788888755 46888888888887622 122222 125
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCC--HHHHHHHHHHHHHHHhhHh
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGT--SRAKRKANGILERLNKAAL 453 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~--~~~~~~A~~~L~~l~~~~~ 453 (458)
++.|+..+.+ .+..++..++.++..++...+......+ ...++.+...+.+.+ +.++..+..++..+..+..
T Consensus 641 ~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 641 SPYLLKALNQ-VDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHHHHHHHC-TTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 7888888864 4588999999999999876654443333 456777777777654 7799999999998887643
No 131
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.37 E-value=1.8e-06 Score=86.30 Aligned_cols=265 Identities=9% Similarity=-0.001 Sum_probs=172.8
Q ss_pred hhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-hh-
Q 012677 172 SLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-NK- 248 (458)
Q Consensus 172 ~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~- 248 (458)
.++..+ +.+...|..|-..|..+...+ . .+.+..|+.++.+. +.+..++..|+..|.|+..... ..
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~-~~~~~~L~~il~~~--~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVEN--------L-PTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC--------h-HHHHHHHHHHHHcC--CCChHHHHHHHHHHHHhccccchHHH
Confidence 444443 677888999998888766521 1 35566677777653 2367888999999998864321 00
Q ss_pred -------hhhhc--CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC--ChHHHHHH
Q 012677 249 -------RLVAE--NPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG--HPLAMKDV 317 (458)
Q Consensus 249 -------~~i~~--~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a 317 (458)
..+-. ...+...|+..|.+.+..+ ..++.+|..++..+.... .-.+.++.|+..+.++ ++.++..|
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~a 150 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKEST 150 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHH
Confidence 00000 0113345777787777777 888889999887542110 1167899999999988 89999999
Q ss_pred HHHHHHhccccc-chhHHHhhCcHHHHHHHhccC----CcHHHHHHHHHHhcCC-HHHHH-HHHhcCCHHHHHHHHhhcC
Q 012677 318 ASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN----SLVDELLAILAMLSSH-QDAIE-EIGELGAIPCLLRIIREST 390 (458)
Q Consensus 318 ~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~~-~~~~~-~i~~~g~i~~Lv~ll~~~~ 390 (458)
+.+|..++..-. ....-.-..+++.++.+|.++ .++..|+.++.++... .++-. .....-.++.|.+.+.+ .
T Consensus 151 l~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~ 229 (462)
T 1ibr_B 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC-P 229 (462)
T ss_dssp HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC-S
T ss_pred HHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-C
Confidence 999999986431 111111135788888888765 3678899999887652 22110 00111135555566654 4
Q ss_pred ChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 391 CERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 391 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+..++..++.+|..++...+......+. ...++.+...+.+.++.++..|...+..+++..
T Consensus 230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 5899999999999999766543222221 155666777777788899999999999888753
No 132
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=5.5e-07 Score=65.23 Aligned_cols=48 Identities=17% Similarity=0.466 Sum_probs=38.6
Q ss_pred ccccccccccccCCccC-CCcccccHHHHHHHHhcC-CCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEG-NRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~-~~~CP~c~~~l~~ 126 (458)
...|+||.+++..-..- .|+|.|+..||.+||+.. ..+||.|+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 35699999988744333 699999999999999853 2689999998764
No 133
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.31 E-value=9.4e-06 Score=74.08 Aligned_cols=185 Identities=11% Similarity=0.084 Sum_probs=135.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcc-CcchhHhhccCchHHHHHHhh-cCChHHHHHHHHHHHHhcccccchhHHHh
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSAL-DSNKLIIGKLGAMTPLIDLLE-EGHPLAMKDVASAIFSLCILLENKRRAVH 336 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~i~~ 336 (458)
+.+...+.+.+...|..|+..|..+... +.....- -...++.|..++. +.+..++..|+.+|..|+..-.....-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4477888899999999999999998765 2211100 1345777888884 88999999999999999964322222222
Q ss_pred hCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC-ch-h
Q 012677 337 AGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD-RT-R 412 (458)
Q Consensus 337 ~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~-~~-~ 412 (458)
...++.|+..+.+. .++..+..+|..++..... . ..++.|...+.+. ++.++..++..|..+.... +. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCc
Confidence 45889999999887 5788899999998774321 1 1367778888854 5999999999999965443 22 1
Q ss_pred HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 413 TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 413 ~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
....+ ...++.|..++.+..+.+|..|..+|..+...-.
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 12233 3578899999999999999999999999886654
No 134
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.25 E-value=3.4e-05 Score=67.99 Aligned_cols=220 Identities=12% Similarity=0.053 Sum_probs=159.3
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC--chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH--DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD 287 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~ 287 (458)
+.+..|..+|.+. |..++.+++.+|..+-+. ..-+....+. +++.++.++++.|..+...|..+|..|-.+.
T Consensus 33 ~~l~~L~~LL~dk----D~~vk~raL~~LeellK~~~~~l~~~~~e~--~Ld~iI~llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 33 RALFLILELAGED----DETTRLRAFVALGEILKRADSDLRMMVLER--HLDVFINALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp HHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhcc----chHHHHHHHHHHHHHHHhccccccHHHHHH--HHHHHHHHHhccchhHHHHHHHHHHHHHcCC
Confidence 5677888898764 899999999999999877 3355566664 8999999999999999999999999987654
Q ss_pred cc-hhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhc
Q 012677 288 SN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLS 364 (458)
Q Consensus 288 ~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La 364 (458)
+- ..... -.+..|..++.++++-.+.+|+..|..|.-.... .+++..+.+++.+. .++..++.+|.+++
T Consensus 107 pL~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 107 PMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp CBCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred CCCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 32 22222 2477888999999999999999999999322222 24778888999766 46777899999998
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc-hhHHHHHHhhhhhHHHHHHh-hhCCHHHHHHHH
Q 012677 365 SHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR-TRTREIMEEENANGTLSRLA-ENGTSRAKRKAN 442 (458)
Q Consensus 365 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~A~ 442 (458)
...+....+ .+.+.-+-.+|++. ++.+++.|+.+|..+.+.+= ++. +-.-.+....+-.+. ..|.|..+.+|.
T Consensus 179 ~~S~D~~i~--~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~pi~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~ka~ 253 (265)
T 3b2a_A 179 NSSADSGHL--TLILDEIPSLLQND-NEFIVELALDVLEKALSFPLLENV--KIELLKISRIVDGLVYREGAPIIRLKAK 253 (265)
T ss_dssp GGCSSCCCG--GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSCCCSCC--HHHHHHHHHHHHHGGGCSSCHHHHHHHH
T ss_pred cccCCHHHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCcccHhH--HHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 732211111 12344456778854 69999999999999998753 211 111133444455566 678999999998
Q ss_pred HHHHHH
Q 012677 443 GILERL 448 (458)
Q Consensus 443 ~~L~~l 448 (458)
.+...+
T Consensus 254 ~v~~~l 259 (265)
T 3b2a_A 254 KVSDLI 259 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
No 135
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.16 E-value=2.1e-06 Score=59.62 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=39.6
Q ss_pred CccccccccccccCCccCCCc--c---cccHHHHHHHHhc-CCCCCCCCCccCC
Q 012677 78 YEFRCPISGEIMTDPVVLANG--Q---TFDRPCIQRWLDE-GNRTCPQTRQVLS 125 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cg--h---~fc~~ci~~~~~~-~~~~CP~c~~~l~ 125 (458)
+...|.||++...+|.++||. + .||+.|+.+|+.. ++.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 455799999887888888864 3 8999999999974 5679999998875
No 136
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.16 E-value=1.1e-05 Score=73.55 Aligned_cols=178 Identities=14% Similarity=0.126 Sum_probs=128.3
Q ss_pred hHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccC-CCCCCCChhHHHHHHHHHHhcccCch-hhh
Q 012677 173 LLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLS-PGRADTDPGLLEDLITTILNLSIHDE-NKR 249 (458)
Q Consensus 173 Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~ 249 (458)
+.+.+ +.+...|..|+..|..+....+.... ......++.|...+. +. +..++..|+.+|..|+..-. .-.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~kd~----~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITKDS----NVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHhhhHH
Confidence 55566 46789999999999999886443211 110134566677773 53 88999999999999985422 112
Q ss_pred hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc-
Q 012677 250 LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL- 328 (458)
Q Consensus 250 ~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~- 328 (458)
..+. .++|.|+..+...+..+|..|..+|.++...... ...++.|...|++.++.++..++..|..+....
T Consensus 94 ~~~~--~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 94 NYAS--ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 2333 2788899999999999999999999999764321 235788888999889999999999999965432
Q ss_pred cc--hhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 329 EN--KRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 329 ~~--~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
.. -...+ ...+|.|+.+|.+. .++..|..+|..++.
T Consensus 166 ~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 166 PTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 21 11222 36889999999876 688889888888865
No 137
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.11 E-value=4.6e-05 Score=67.15 Aligned_cols=197 Identities=15% Similarity=0.073 Sum_probs=145.2
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCch-hhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPL-FRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+.+..|++.|. .|..++..++..|..+.++-+. .+..+.+ ..++.++.++++. |..+.-.|+.+|..|-.+.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e--~~Ld~iI~llk~~----dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE--RHLDVFINALSQE----NEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHTCCST----THHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH--HHHHHHHHHHhcc----chhHHHHHHHHHHHHHcCC
Confidence 46777888885 5688999999999998887433 4444555 7899999999875 8899999999999887665
Q ss_pred h-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 E-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+ ....+.. +..+|..++.+++.-.+..|+..|..+.-... ..+++..|.+++.+.+..++..++.+|.++
T Consensus 107 pL~~~~y~K---l~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 107 PMGSKTFLK---AAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp CBCHHHHHH---HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHH---HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5 3444444 45778999999999999999999999832221 234677888999888999999999999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHh
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIR 387 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~ 387 (458)
+...++..- -.+++.-+-.+|.+. .+++.|+.+|..+.+.|-- .+.++.+.+++.
T Consensus 178 a~~S~D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~------~~~~~~~~~~~~ 234 (265)
T 3b2a_A 178 LNSSADSGH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL------ENVKIELLKISR 234 (265)
T ss_dssp GGGCSSCCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC------SCCHHHHHHHHH
T ss_pred hcccCCHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc------HhHHHHHHHHHH
Confidence 986653332 123444455667665 5799999999999885321 344555555443
No 138
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.11 E-value=1.3e-05 Score=90.51 Aligned_cols=226 Identities=13% Similarity=0.084 Sum_probs=154.8
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..+..+++.+. .+...|..|+..|..++...+. ... ...++.|+..|.+. +..++..|+.+|..++..-.
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~--~~i~~~Ll~~l~d~----~~~vR~~a~~~L~~i~~~l~ 118 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQV--ETIVDTLCTNMLSD----KEQLRDISSIGLKTVIGELP 118 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHH--HHHHHHHHHHTTCS----SSHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHH--HHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHhCC
Confidence 45677777775 5678899999999999865433 111 24567777777654 66788888888887764322
Q ss_pred h-------hhhhhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHH
Q 012677 247 N-------KRLVAENPLAIPLLIDSVR-TGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDV 317 (458)
Q Consensus 247 ~-------~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 317 (458)
. ...... .++|.|+..+. +++..++..|+.+|..++..... -.. .-...++.|+..|.++++.+|..|
T Consensus 119 ~~~~~~~~~~~~~~--~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a 195 (1230)
T 1u6g_C 119 PASSGSALAANVCK--KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRT 195 (1230)
T ss_dssp -----CCTHHHHHH--HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHH
T ss_pred CcccccchHHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHH
Confidence 1 112222 37888999998 57899999999999998753211 101 114467778888888889999999
Q ss_pred HHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCC-HHHHHHHHh--cCCHHHHHHHHhhcCC
Q 012677 318 ASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSH-QDAIEEIGE--LGAIPCLLRIIRESTC 391 (458)
Q Consensus 318 ~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~-~~~~~~i~~--~g~i~~Lv~ll~~~~~ 391 (458)
+.+|..++...+... -...++.|++.|.+. ..+..++.++..++.. +. .+.. ...++.++..+.+. +
T Consensus 196 ~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~-~ 268 (1230)
T 1u6g_C 196 IIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVD-D 268 (1230)
T ss_dssp HHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSC-C
T ss_pred HHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCC-C
Confidence 999999987554321 234688888888644 4666677777777652 21 1211 34688888888854 5
Q ss_pred hhHHhHHHHHHHHHhccCchh
Q 012677 392 ERNKENCAAILYNICFTDRTR 412 (458)
Q Consensus 392 ~~~~~~a~~~L~~L~~~~~~~ 412 (458)
+.+++.++.++..++...+..
T Consensus 269 ~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 269 DELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp TTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHHHChHH
Confidence 899999999999998865443
No 139
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.07 E-value=0.00024 Score=74.00 Aligned_cols=276 Identities=9% Similarity=0.022 Sum_probs=153.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhcc
Q 012677 131 PNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGEST 209 (458)
Q Consensus 131 ~n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~ 209 (458)
+|+..|++.=-+....-...| ++ -.-.+..+.+.+. +++..|-.|+..|..+.. +. +.+
T Consensus 86 ~~~~~Krl~YL~l~~~~~~~~---------e~---~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-- 145 (621)
T 2vgl_A 86 NRYTEKQIGYLFISVLVNSNS---------EL---IRLINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-- 145 (621)
T ss_dssp SCHHHHHHHHHHHHHSCCCCH---------HH---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH--
T ss_pred CCHHHHHHHHHHHHHHccCCc---------HH---HHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH--
Confidence 577788877666665432211 00 0123555666674 567788889999988753 33 222
Q ss_pred CChHHHhhcc--CCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC
Q 012677 210 DAIPLLLSPL--SPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD 287 (458)
Q Consensus 210 g~i~~Lv~lL--~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~ 287 (458)
..++.+..+| .+. ++.++..|+.++..+....+ .++..+++++.|..+|...++.++.+|+.+|..++..+
T Consensus 146 ~l~~~v~~~l~~~d~----~~~VRK~A~~al~kl~~~~p---~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 146 AFAGEIPKILVAGDT----MDSVKQSAALCLLRLYRTSP---DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHTTHHHHHHHCSSS----CHHHHHHHHHHHHHHHHHCG---GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHHHhCh---hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 4556677777 543 89999999999998886543 22232458999999999999999999999999998754
Q ss_pred cchhHhhccCchHHHHHHhh----cC-------------ChHHHHHHHHHHHHhccccc--chhHHHhhCcHHHHHHHhc
Q 012677 288 SNKLIIGKLGAMTPLIDLLE----EG-------------HPLAMKDVASAIFSLCILLE--NKRRAVHAGAVRVILRKIM 348 (458)
Q Consensus 288 ~~~~~i~~~g~i~~Lv~lL~----~~-------------~~~~~~~a~~aL~~L~~~~~--~~~~i~~~g~v~~Lv~ll~ 348 (458)
.. .. ...++.++..|. .+ ++-.+...+..|..++..++ .+..+.+ .++.++..+.
T Consensus 219 ~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~ 292 (621)
T 2vgl_A 219 PE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQ 292 (621)
T ss_dssp HH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHH
T ss_pred hH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhc
Confidence 32 11 123444443332 21 45566777777776664322 1211211 2222222211
Q ss_pred c------------C-CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHH
Q 012677 349 E------------N-SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTRE 415 (458)
Q Consensus 349 ~------------~-~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 415 (458)
+ + .+.-.|+.++..+...++.... ++..|..+|.++ ++.++..|+..|..++...+.. .
T Consensus 293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~-----~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~~--~ 364 (621)
T 2vgl_A 293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVR-----ACNQLGQFLQHR-ETNLRYLALESMCTLASSEFSH--E 364 (621)
T ss_dssp SCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTTH--H
T ss_pred cCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCcH--H
Confidence 0 0 2344455555555444333222 244555555533 3566666666666666544311 1
Q ss_pred HHHhhhhhHHHHHHhh-hCCHHHHHHHHHHHHHHH
Q 012677 416 IMEEENANGTLSRLAE-NGTSRAKRKANGILERLN 449 (458)
Q Consensus 416 ~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~l~ 449 (458)
++. .....++..+. +.+..++.+|..+|..++
T Consensus 365 ~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 365 AVK--THIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 221 12334444444 455555555555555554
No 140
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.05 E-value=1.5e-06 Score=71.39 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=84.8
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
...++.|+.+|.+. +..++..|+.+|..+.. . .++.|+.+|++++..+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~----~~~vR~~A~~~L~~~~~-----------~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADE----NKWVRRDVSTALSRMGD-----------E-AFEPLLESLSNEDWRIRGAAAWIIGNFQD--- 71 (131)
T ss_dssp ----------CCSS----CCCSSSSCCSSTTSCSS-----------T-THHHHHHGGGCSCHHHHHHHHHHHGGGCS---
T ss_pred cccHHHHHHHhcCC----CHHHHHHHHHHHHHhCc-----------h-HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---
Confidence 46678888888864 77788888777765431 1 36889999999999999999999987742
Q ss_pred chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHH
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAM 362 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~ 362 (458)
..+++.|+.+|+++++.++..|+++|.++. +..+++.|+.++.++ .++..|+.+|..
T Consensus 72 -------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 346899999999999999999999999875 245788999999866 467777777654
No 141
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.98 E-value=0.00024 Score=66.49 Aligned_cols=182 Identities=8% Similarity=0.058 Sum_probs=133.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-hhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHh-h
Q 012677 260 LLIDSVRTGTIETRRNAAAALFS-LSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVH-A 337 (458)
Q Consensus 260 ~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~-~ 337 (458)
.++.-|.+++...+..+..-|.. ++.+.+....+++.+|+..|+.+...++...+..++.||.+|-.+...-..+++ .
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 35566667777888888888887 565667788888888999999999999999999999999999998887766665 4
Q ss_pred CcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHh--------cC--CHHHHHHHHh--hcCChhHHhHHHHHH
Q 012677 338 GAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGE--------LG--AIPCLLRIIR--ESTCERNKENCAAIL 402 (458)
Q Consensus 338 g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~--------~g--~i~~Lv~ll~--~~~~~~~~~~a~~~L 402 (458)
..|..|..++.+. .+.+.|+.+|..++. ++.+...+.+ .| -...|+.+|+ ++.+..++.+|+..+
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 7889999999865 577889999999987 4434333322 12 2779999997 234589999999888
Q ss_pred HHHhccCch-----hHHHHHHhhhhhHHHHHHhhhC--CHHHHHHH
Q 012677 403 YNICFTDRT-----RTREIMEEENANGTLSRLAENG--TSRAKRKA 441 (458)
Q Consensus 403 ~~L~~~~~~-----~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~A 441 (458)
-.+....++ .....+++.|.-..+...+.+. ++..+++-
T Consensus 282 N~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql 327 (339)
T 3dad_A 282 NKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQL 327 (339)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHH
T ss_pred HHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHH
Confidence 777665442 2223345566666677766553 44555543
No 142
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.94 E-value=0.00018 Score=74.99 Aligned_cols=251 Identities=12% Similarity=0.104 Sum_probs=167.5
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
....++.++ .+.+.++-+.-.+..++..+++.... ++..+.+-|.++ ++.++..|+.+|.++...
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L------~iN~l~kDl~~~----n~~ir~lALr~L~~i~~~---- 141 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL------INNAIKNDLASR----NPTFMGLALHCIANVGSR---- 141 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH------HHHHHHHHHHSC----CHHHHHHHHHHHHHHCCH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH------HHHHHHHhcCCC----CHHHHHHHHHHhhccCCH----
Confidence 345666664 56777777777777777655433211 234555555554 889999999999998642
Q ss_pred hhhhcCCCCHHHHHHHH--hcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 249 RLVAENPLAIPLLIDSV--RTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL--~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
.+.+. +++.+.++| .+.++-+|..|+-++..+...++ ..+...+.++.|..+|.+.++.++..|+.+|..++.
T Consensus 142 -e~~~~--l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 142 -EMAEA--FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp -HHHHH--HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 24442 677789999 78899999999999999987443 222235889999999998899999999999999987
Q ss_pred cccchhHHHhhCcHHHHHH----Hhcc---------------CCcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHHH
Q 012677 327 LLENKRRAVHAGAVRVILR----KIME---------------NSLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLRI 385 (458)
Q Consensus 327 ~~~~~~~i~~~g~v~~Lv~----ll~~---------------~~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~l 385 (458)
..... + ...++.+++ ++.. +-.+...+.+|..++. +++.+..+.+ .+..++..
T Consensus 217 ~~~~~--~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~ 290 (621)
T 2vgl_A 217 KNPEE--F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNK 290 (621)
T ss_dssp HCHHH--H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHH
T ss_pred hChHH--H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHh
Confidence 54321 1 124444444 3321 1357778888888876 3566655543 23334433
Q ss_pred Hh---------hcC-ChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 386 IR---------EST-CERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 386 l~---------~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+. +.+ +..+.-.|+.++..+.. . . .++ ..++..|..++.+.++.++-.|...|..+....
T Consensus 291 ~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~-~---~~~--~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~ 360 (621)
T 2vgl_A 291 AQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-E-P---NLL--VRACNQLGQFLQHRETNLRYLALESMCTLASSE 360 (621)
T ss_dssp HHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-C-H---HHH--HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT
T ss_pred hccCcccccccccchHHHHHHHHHHHHHhcCC-c-H---HHH--HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcc
Confidence 21 111 13677778888888752 1 1 222 245678888888788899999998888887543
No 143
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.93 E-value=7e-07 Score=73.39 Aligned_cols=117 Identities=12% Similarity=0.061 Sum_probs=86.4
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHH
Q 012677 256 LAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV 335 (458)
Q Consensus 256 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 335 (458)
..++.|+.+|++++..+|..|+.+|.++.. . .++.|+.+|+++++.++..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----------~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD----------E-AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS----------T-THHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----------h-HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence 366778888888888888888877765421 1 37999999999999999999999998753
Q ss_pred hhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHH
Q 012677 336 HAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYN 404 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 404 (458)
..+++.|+.+|.++ .++..++.+|..+.. ..+++.|+.++.+. +..++..|+.+|..
T Consensus 72 -~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~-~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLET 130 (131)
T ss_dssp -HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-CTHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 34689999999876 578889999998852 23578899999854 58999999988864
No 144
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.93 E-value=4.7e-06 Score=62.68 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=38.8
Q ss_pred ccccccccccC-CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 81 RCPISGEIMTD-PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 81 ~C~ic~~~~~~-p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.|++|.-.+.. ...+||+|.||..|+..|.+++..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 58999876653 45679999999999999998778899999988754
No 145
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.90 E-value=6.6e-05 Score=68.79 Aligned_cols=185 Identities=9% Similarity=0.072 Sum_probs=128.1
Q ss_pred HHhh-cCCcHHHHHHHHHHHH-HHhhCchhhhhhhhccCChHHHhhcc-CCCCCCCChhHHHHHHHHHHhcccCch--hh
Q 012677 174 LEKM-SSSLSDQKEAAKELRL-LTKRMPLFRALFGESTDAIPLLLSPL-SPGRADTDPGLLEDLITTILNLSIHDE--NK 248 (458)
Q Consensus 174 v~~l-~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~~a~~~L~~ls~~~~--~~ 248 (458)
-+.+ +++..+|.+|+..|.. +..+.+.......+....+..|...+ ++. +..++..|+.+|..++.+-. .-
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~----n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA----NIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHhcccccc
Confidence 3344 5678999999999999 87654432210111012355666666 443 78889999999999985322 11
Q ss_pred h-hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhh--ccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 249 R-LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIG--KLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 249 ~-~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
. ..... ++|.++..++.....++..+..+|..+...-+. .... -...++.|+..|++.++.++..++.+|..+.
T Consensus 98 ~~~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 98 SKDYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp CHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 1 23332 788889999888899999999999988764311 1111 1236888889999999999999999999998
Q ss_pred ccccch-hH---HHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 326 ILLENK-RR---AVHAGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 326 ~~~~~~-~~---i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
...... .. .+....+|.|.++|.+. .++..|..+|..++.
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 654421 22 22357899999999887 588888888887754
No 146
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.87 E-value=2.7e-06 Score=79.10 Aligned_cols=49 Identities=27% Similarity=0.464 Sum_probs=38.2
Q ss_pred CccccccccccccC----Ccc----CCCcccccHHHHHHHHhcCC----------CCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTD----PVV----LANGQTFDRPCIQRWLDEGN----------RTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~----p~~----l~cgh~fc~~ci~~~~~~~~----------~~CP~c~~~l~~ 126 (458)
....|+||...+.+ |.. ..|||.||..|+.+||.... ..||.|+.+++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34569999998876 422 36999999999999997421 379999998763
No 147
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.86 E-value=0.0015 Score=55.27 Aligned_cols=214 Identities=14% Similarity=0.155 Sum_probs=147.8
Q ss_pred hhhhhhhhHHhhcCC-cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 166 SRSHLNSLLEKMSSS-LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 166 ~~~~l~~Lv~~l~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.+.+..++..|..| ..+|.+|+..|..+++..++....+ +..|+.+++.+ +..........+++.++.-
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl------~~kL~vm~~ks---EaIpltqeIa~a~G~la~i 100 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM------LKKLFSLLKKS---EAIPLTQEIAKAFGQMAKE 100 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH------HHHHHHHHHHC---CSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH------HHHHHHHHhhc---ccCchHHHHHHHHhHHHHh
Confidence 345788889988766 5789999999999998776655443 34566666553 3445544556677777754
Q ss_pred chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 245 DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
. ..++. +.+|.|..=+.-+++.++.+...+|..++...+. .+ .+++.-+..++.+++..-+..|+.. +
T Consensus 101 ~---Pe~v~--~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~--~~v~rdi~smltskd~~Dkl~aLnF---i 168 (253)
T 2db0_A 101 K---PELVK--SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LM--ASIVRDFMSMLSSKNREDKLTALNF---I 168 (253)
T ss_dssp C---HHHHH--HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HH--HHHHHHHHHHTSCSSHHHHHHHHHH---H
T ss_pred C---HHHHH--hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HH--HHHHHHHHHHhcCCChHHHHHHHHH---H
Confidence 3 34444 2788888778889999999999999999875432 11 3457778889988775555555544 4
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
+.-.+|...-+. -.+|.|..+|.++ -++..++.+|.+|+. ++..|..+.+ -++-+.+ .|+.++......
T Consensus 169 ~alGen~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D-~S~lv~~~V~eg 240 (253)
T 2db0_A 169 EAMGENSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELND-TSSLVNKTVKEG 240 (253)
T ss_dssp HTCCTTTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCC-SCHHHHHHHHHH
T ss_pred HHHhccCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcC-cHHHHHHHHHHH
Confidence 444555555443 3788999999988 478889999999999 7877766532 2444443 457788777777
Q ss_pred HHHHhcc
Q 012677 402 LYNICFT 408 (458)
Q Consensus 402 L~~L~~~ 408 (458)
|..|..-
T Consensus 241 L~rl~l~ 247 (253)
T 2db0_A 241 ISRLLLL 247 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7776643
No 148
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00022 Score=65.25 Aligned_cols=190 Identities=8% Similarity=0.089 Sum_probs=130.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-hhccC-cchhHhhc-cCchHHHHHHh-hcCChHHHHHHHHHHHHhccccc-chhH-H
Q 012677 261 LIDSVRTGTIETRRNAAAALFS-LSALD-SNKLIIGK-LGAMTPLIDLL-EEGHPLAMKDVASAIFSLCILLE-NKRR-A 334 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~-~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~~-~~~~-i 334 (458)
+-..+.+.+..-|..|...|.. +.... +......+ ...+..|...+ ++.+..++..|+.+|..|+..-. .... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5567788899999999999998 86431 11100122 34577888888 67789999999999999985332 2221 2
Q ss_pred HhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc
Q 012677 335 VHAGAVRVILRKIMEN--SLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 335 ~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
.-.-++|.++..+.+. .+++.+..+|..++. ++.. ..-.=...++.|...|++. +..+++.++.+|..++...+
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~-~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA-SSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC-TTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc-cCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence 2234789999999886 466777777777755 2210 0000001366777888865 59999999999999987664
Q ss_pred hhHHHHHH-h-hhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 411 TRTREIME-E-ENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 411 ~~~~~~~~-~-~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
..-..+.. - ...++.|.+++.+.++.+|..|..+|..+++.-
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 21012211 1 367899999999999999999999999988654
No 149
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.81 E-value=0.00043 Score=64.82 Aligned_cols=152 Identities=10% Similarity=0.038 Sum_probs=120.4
Q ss_pred HHHHhhcCChHHHHHHHHHHHH-hcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhc-C
Q 012677 302 LIDLLEEGHPLAMKDVASAIFS-LCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGEL-G 377 (458)
Q Consensus 302 Lv~lL~~~~~~~~~~a~~aL~~-L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~-g 377 (458)
++.-|.+++.+.+..++.-|.. +..+.+....++..+|+..|+....++ ..+..++.+|.+|..+.++-.-++++ .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3455556777788888888888 556777888899999999999999876 67888999999999999999888754 4
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhh---------hhHHHHHHhh---hCCHHHHHHHHHHH
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEEN---------ANGTLSRLAE---NGTSRAKRKANGIL 445 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g---------~~~~L~~ll~---~~~~~~~~~A~~~L 445 (458)
.|..|..++.+ ....+...|+++|.+++..++....-+..+.. ....|+.+++ +++..++.+|..+|
T Consensus 203 fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 203 TIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 68888888885 55999999999999999988755433332222 2567888887 67889999999999
Q ss_pred HHHHhhHhh
Q 012677 446 ERLNKAALI 454 (458)
Q Consensus 446 ~~l~~~~~~ 454 (458)
..+-...+.
T Consensus 282 N~lL~~apd 290 (339)
T 3dad_A 282 NKTLAALPD 290 (339)
T ss_dssp HHHHHHCSS
T ss_pred HHHHhcCCC
Confidence 877766553
No 150
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.81 E-value=0.00057 Score=67.20 Aligned_cols=221 Identities=11% Similarity=0.077 Sum_probs=150.6
Q ss_pred hhHHHHHHHHHHhcccCchhhhhhhcCCC-CHHHHHHHHhc---------------C--CHHHHHHHHHHHHHhhccCcc
Q 012677 228 PGLLEDLITTILNLSIHDENKRLVAENPL-AIPLLIDSVRT---------------G--TIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 228 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~~-~i~~Lv~lL~~---------------~--~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
.+.+..++..|..|...++.|..+...+| .+|.++.+++. + ..+++-.++-++.-|+..++.
T Consensus 182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~ 261 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence 45566788888888889999998887543 46767655441 1 256678888889999988877
Q ss_pred hhHhhccCch--HHHHHHhhcC-ChHHHHHHHHHHHHhccccc-c----hhH-HHhhCcHHHHHHHhccC-----CcHHH
Q 012677 290 KLIIGKLGAM--TPLIDLLEEG-HPLAMKDVASAIFSLCILLE-N----KRR-AVHAGAVRVILRKIMEN-----SLVDE 355 (458)
Q Consensus 290 ~~~i~~~g~i--~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~-~----~~~-i~~~g~v~~Lv~ll~~~-----~~~~~ 355 (458)
.+.+...+.+ +.|+.+++.. ..++..-++.+|.||..... + ... ++..++ +++++.|... ++.+.
T Consensus 262 ~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~ed 340 (480)
T 1ho8_A 262 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQD 340 (480)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHH
Confidence 7777776643 6777778765 78899999999999987652 1 122 333445 5566666533 22221
Q ss_pred -------HHHHHHHhcCCHHH---------------HH-HHHhcC----------CHHHHHHHHhh---------cCChh
Q 012677 356 -------LLAILAMLSSHQDA---------------IE-EIGELG----------AIPCLLRIIRE---------STCER 393 (458)
Q Consensus 356 -------a~~~L~~La~~~~~---------------~~-~i~~~g----------~i~~Lv~ll~~---------~~~~~ 393 (458)
--.....+++.++. +. .+..++ .+..|+++|.. +.++.
T Consensus 341 l~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~ 420 (480)
T 1ho8_A 341 ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKI 420 (480)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcc
Confidence 22222233322222 22 332222 47889999974 23466
Q ss_pred HHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 394 NKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 394 ~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
+..-|+.=|..++.+.|.. +.++++.|+-..+.+|+.+.++.++.+|..+++.+=.
T Consensus 421 ~laVAc~Digefvr~~P~g-r~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 421 IIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred eEEeecccHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777888888889877643 5888889999999999999999999999999987654
No 151
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.65 E-value=0.0023 Score=68.44 Aligned_cols=198 Identities=15% Similarity=0.068 Sum_probs=134.1
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHH-hcCCHHHHHHHHHHHHHhhccCcc
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSV-RTGTIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
+++.|..+|... +....+.|+.+|+.+-.+..|. .++..|+..+ ...+..++..++..|.-+..
T Consensus 473 v~e~L~~~L~dd----~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~---- 537 (963)
T 4ady_A 473 VYEALKEVLYND----SATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINY---- 537 (963)
T ss_dssp HHHHHHHHHHTC----CHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHhcC----CHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhC----
Confidence 466677777653 4455556666666542222221 1334455543 34577888888888876633
Q ss_pred hhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcC
Q 012677 290 KLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSS 365 (458)
Q Consensus 290 ~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~ 365 (458)
++...++.++..|.. .++-+|..++.++.--.....|.. +|+.|+..+.+. .++..|+.+|..++.
T Consensus 538 ----g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 538 ----GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp ----TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred ----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhcc
Confidence 445578888888875 477777777777765544444443 456666666533 577778888887755
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHH
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGIL 445 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L 445 (458)
... ..++.++.+|.++.++.++..|..+|..++.+++.. .+++.|..++.+.++.+++.|..+|
T Consensus 608 g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 608 RDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp SSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred CCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHccCCCHHHHHHHHHHH
Confidence 321 357888887776667999999999999999877642 2566888888888889999999888
Q ss_pred HHHH
Q 012677 446 ERLN 449 (458)
Q Consensus 446 ~~l~ 449 (458)
..+.
T Consensus 672 G~Ig 675 (963)
T 4ady_A 672 SMIL 675 (963)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 8775
No 152
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.56 E-value=0.00099 Score=71.93 Aligned_cols=261 Identities=13% Similarity=0.121 Sum_probs=168.3
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..+..+++.++ ++...+..|...+..+....... .... .+.+..|...+... . .. +.|+.++..++....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~k----~-~~-~~a~~~~~~~~~~~~ 84 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVP-EHFFGELAKGIKDK----K-TA-ANAMQAVAHIANQSN 84 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCC-HHHHHHHHHHHTSH----H-HH-HHHHHHHHHHTCTTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccc-hhHHHHHHHHHhcc----C-CH-HHHHHHHHHHHHhcC
Confidence 34566666665 34566777888888777643211 1222 35667777777652 1 22 888888888885543
Q ss_pred h---hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC-ChHHHHHHHHHHH
Q 012677 247 N---KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG-HPLAMKDVASAIF 322 (458)
Q Consensus 247 ~---~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~ 322 (458)
. ...+.- +.+|.++..+......++..|..++..+...- +...+ ..++|.|+..|.+. .-..+..|+.+|.
T Consensus 85 ~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~-~~~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~ 159 (986)
T 2iw3_A 85 LSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAV-NPVAI--KALLPHLTNAIVETNKWQEKIAILAAFS 159 (986)
T ss_dssp CCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-CGGGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC-CHHHH--HHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 2 122222 26777788877778899999988888776432 11222 45789999988776 6899999999999
Q ss_pred HhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHH
Q 012677 323 SLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAA 400 (458)
Q Consensus 323 ~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 400 (458)
.|+..........=..+||.+-+.+.+- ++...|..++..+|..-+|+.. ...||.|++.+.++ +-...++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p---~~~~~~~~ 233 (986)
T 2iw3_A 160 AMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADP---TEVPETVH 233 (986)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCT---THHHHHHH
T ss_pred HHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcCh---hhhHHHHH
Confidence 9987653222222247888888888776 6778788888888773333221 24589999999954 22444555
Q ss_pred HHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 401 ILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 401 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.|..-+.-.+-.... + +-.+|.|.+=+...+..++++++.++.|||+.
T Consensus 234 ~l~~~tfv~~v~~~~-l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 234 LLGATTFVAEVTPAT-L--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp HHTTCCCCSCCCHHH-H--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred HhhcCeeEeeecchh-H--HHHHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence 555544433322111 1 22445555555556888999999999999985
No 153
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.54 E-value=0.0011 Score=63.58 Aligned_cols=244 Identities=7% Similarity=0.008 Sum_probs=143.6
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
....++.+. .+.+.++-..-.+..++...+.. |. ++..|.+-++++ ++-++-.|+.+|.++...+
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---iL----v~Nsl~kDl~~~----N~~iR~lALRtL~~I~~~~--- 135 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---II----VTSSLTKDMTGK----EDSYRGPAVRALCQITDST--- 135 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---GG----GHHHHHHHHHSS----CHHHHHHHHHHHHHHCCTT---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---HH----HHHHHHhhcCCC----cHhHHHHHHHHHhcCCCHH---
Confidence 344566664 56777777777777777652221 11 245566666654 8899999999999987443
Q ss_pred hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc
Q 012677 249 RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 328 (458)
+++ .+.+.+.+.|.+.++.+|..|+-+...|.... .+.+ .+.++.+-.++.+.++.++.+|+.+|+.+...+
T Consensus 136 --m~~--~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 136 --MLQ--AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp --THH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred --HHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 223 25666788888999999999999998886543 3333 258889999999999999999999999997654
Q ss_pred cchhHHHhhCcHHHHHHHhccCCc--HHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHH
Q 012677 329 ENKRRAVHAGAVRVILRKIMENSL--VDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNI 405 (458)
Q Consensus 329 ~~~~~i~~~g~v~~Lv~ll~~~~~--~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 405 (458)
. .++..|+..+..+.+ .-.-+.+|..+.. .++.- .-.....++.|..+|++. ++.+.-.|++++..|
T Consensus 208 ~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~-~~~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l 277 (355)
T 3tjz_B 208 R--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED-GSRDSPLFDFIESCLRNK-HEMVVYEAASAIVNL 277 (355)
T ss_dssp H--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------CCCCCS-SHHHHHHHHHHHTC-
T ss_pred h--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhc
Confidence 1 144555665554322 2222333333333 11110 001123355566666654 588888999999887
Q ss_pred hccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 406 CFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
...+.. .+ ..++..|..++.+.++.+|--|...|..+...
T Consensus 278 ~~~~~~----~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 278 PGCSAK----EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ----------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred cCCCHH----HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 663321 12 23566777777777777777777666655543
No 154
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.47 E-value=0.024 Score=61.27 Aligned_cols=264 Identities=13% Similarity=0.117 Sum_probs=173.1
Q ss_pred hhhhhHHhhcCCcHHHHHHHHHHHHHHhhCch--hhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKRMPL--FRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 169 ~l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.+..+.+.+..--.. ..|+..+..++..... ..+.+.- +.++.+++...+. ...++..|-.++..+...-+
T Consensus 55 ~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk----~~~v~~aa~~~~~~~~~~~~ 127 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNK----DKEIQSVASETLISIVNAVN 127 (986)
T ss_dssp HHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCS----SHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCC----chHHHHHHHHHHHHHHHhCC
Confidence 444555555321111 6778888888854321 1122222 4567777766653 56777777666665543211
Q ss_pred hhhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 247 NKRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
...+ . .++|.|+..|+++ ....+..|..+|..|+... ...+.. ...||.+-..+.+..++++..|..++..
T Consensus 128 -~~a~-~--~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~ 201 (986)
T 2iw3_A 128 -PVAI-K--ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTK 201 (986)
T ss_dssp -GGGH-H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -HHHH-H--HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHH
Confidence 1111 2 2789999988766 6899999999999998754 344443 6678888888888899999999999999
Q ss_pred hcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHHH-HHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 324 LCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDA-IEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 324 L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
+|..-+|+.- ...+|.|++.+.+++-...++..|..-..-.+. ...+ +=.+|.|.+-|.. .+..++..++-++
T Consensus 202 ~~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~-~~~~~~r~~~~~~ 275 (986)
T 2iw3_A 202 ATETVDNKDI---ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNE-RETGIKRKSAVII 275 (986)
T ss_dssp HGGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHhcCCCcch---hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhcc-CcchhheeeEEEE
Confidence 9987766542 357899999999886666666655544431111 1111 0025667777764 3588999999999
Q ss_pred HHHhcc--CchhHHHHHHhhhhhHHHHHHhhh-CCHHHHHHHHHHHHHHHhhHh
Q 012677 403 YNICFT--DRTRTREIMEEENANGTLSRLAEN-GTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 403 ~~L~~~--~~~~~~~~~~~~g~~~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~~ 453 (458)
.|||.- ++...+.++ ...+|.|-+.... ..|.+++.|..++..|.+...
T Consensus 276 ~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 276 DNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 999984 444444444 4556666665544 578999999999999877654
No 155
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.21 E-value=0.00071 Score=64.82 Aligned_cols=264 Identities=14% Similarity=0.081 Sum_probs=136.6
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhc
Q 012677 130 IPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGES 208 (458)
Q Consensus 130 ~~n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~ 208 (458)
.+|..+|+++=-|....... | + ..+ -+...+.+.+. +++-.|-.|+..|..+.. ++.- +
T Consensus 79 s~d~~lKrLvYLyl~~~~~~-~---~----e~i-----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~----~- 138 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSCI-A---E----DVI-----IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STML----Q- 138 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTTT-S---S----CGG-----GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTH----H-
T ss_pred CCCHHHHHHHHHHHHHhCCC-H---H----HHH-----HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHH----H-
Confidence 46888999887776654322 1 1 111 14556777774 567778888888888764 2221 1
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
...+.+-..|.+. ++.++..|+-+...|....+. +++ +++..+-+++.+.++-++.+|..+|..+...+.
T Consensus 139 -~l~~~lk~~L~d~----~pyVRk~A~l~~~kL~~~~pe---~v~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 139 -AIERYMKQAIVDK----VPSVSSSALVSSLHLLKCSFD---VVK--RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp -HHHHHHHHHHTCS----SHHHHHHHHHHHHHHTTTCHH---HHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred -HHHHHHHHHcCCC----CHHHHHHHHHHHHHHhccCHH---HHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 3344555666654 899999999998888765543 333 388889999999999999999999999987541
Q ss_pred chhHhhccCchHHHHHHhhcC---ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHh
Q 012677 289 NKLIIGKLGAMTPLIDLLEEG---HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAML 363 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~L 363 (458)
.++..|+.-+..+ ++-.+..-++.+..+...++.. .....++.|...|++. .+.-.|+.++..+
T Consensus 209 --------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l 277 (355)
T 3tjz_B 209 --------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNL 277 (355)
T ss_dssp --------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-
T ss_pred --------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Confidence 1455666666553 4555555555555554433100 1233455555566654 5778888888887
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHH
Q 012677 364 SSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANG 443 (458)
Q Consensus 364 a~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~ 443 (458)
...+.. .. ..++..|..++.++ ++.+|-.|+..|..+....++.. . .-..-+..++.+++..+...|..
T Consensus 278 ~~~~~~---~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v----~--~~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 278 PGCSAK---EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAV----T--ACNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp --------------CCCTHHHHHHSS-SSSSHHHHHHCC-----------------------------------------
T ss_pred cCCCHH---HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHH----H--HHHHHHHHHccCCcHhHHHHHHH
Confidence 552221 11 33466777778755 48999999999999998776432 1 12345667777888777777766
Q ss_pred HH
Q 012677 444 IL 445 (458)
Q Consensus 444 ~L 445 (458)
.|
T Consensus 347 tl 348 (355)
T 3tjz_B 347 TL 348 (355)
T ss_dssp --
T ss_pred Hh
Confidence 54
No 156
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.11 E-value=0.059 Score=53.02 Aligned_cols=233 Identities=16% Similarity=0.182 Sum_probs=140.7
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch---hhh-hhhcCCCCHHHHHHHHhcCCHHH-HHHHHHHHHHh
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE---NKR-LVAENPLAIPLLIDSVRTGTIET-RRNAAAALFSL 283 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~---~~~-~i~~~~~~i~~Lv~lL~~~~~~~-~~~a~~~L~~L 283 (458)
..++..++++|+.. .+.++....+..+..+...++ .+. .+.+.......+...+.+.+... ...+..++..+
T Consensus 76 ~~~~~~~l~lL~~~---~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll 152 (480)
T 1ho8_A 76 GKTLIPLIHLLSTS---DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLL 152 (480)
T ss_dssp STTHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHH
Confidence 46678889988864 366777777777766655544 322 33343322222322222333343 44455444444
Q ss_pred hccCcchhHhhccCchHH------HHHHhhcC-ChHHHHHHHHHHHHhcccccchhHHHhhC--cHHHHHHHhc------
Q 012677 284 SALDSNKLIIGKLGAMTP------LIDLLEEG-HPLAMKDVASAIFSLCILLENKRRAVHAG--AVRVILRKIM------ 348 (458)
Q Consensus 284 s~~~~~~~~i~~~g~i~~------Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~i~~~g--~v~~Lv~ll~------ 348 (458)
+..... +...++. ++..|... +...+.-++.+|..|...++.|..+.+.+ .+++++.++.
T Consensus 153 ~~~~~~-----~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~ 227 (480)
T 1ho8_A 153 VQNGLH-----NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQ 227 (480)
T ss_dssp TSTTTC-----CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred hccCCc-----cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccc
Confidence 421111 1222333 33444442 34556678999999999999999988753 4777765443
Q ss_pred ---------cC----CcHHHHHHHHHHhcCCHHHHHHHHhcCCH--HHHHHHHhhcCChhHHhHHHHHHHHHhccCchh-
Q 012677 349 ---------EN----SLVDELLAILAMLSSHQDAIEEIGELGAI--PCLLRIIRESTCERNKENCAAILYNICFTDRTR- 412 (458)
Q Consensus 349 ---------~~----~~~~~a~~~L~~La~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~- 412 (458)
++ .++..++-+++-|+.+++..+.+...+.. +.|+.+++.+.-+++-+-++.+|.||....+..
T Consensus 228 ~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~ 307 (480)
T 1ho8_A 228 LATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH 307 (480)
T ss_dssp -----------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH
T ss_pred cccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhh
Confidence 11 24688999999999999988888887743 678888887666999999999999999876321
Q ss_pred ---HHHHHHhhhhhHHHHHHhhh--CCHHHHHHHHHHHHHHH
Q 012677 413 ---TREIMEEENANGTLSRLAEN--GTSRAKRKANGILERLN 449 (458)
Q Consensus 413 ---~~~~~~~~g~~~~L~~ll~~--~~~~~~~~A~~~L~~l~ 449 (458)
...++...++++.|..|... .++.+.+--..+...|.
T Consensus 308 ~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~ 349 (480)
T 1ho8_A 308 KKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILE 349 (480)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHH
Confidence 12233223455555555444 35556554444444443
No 157
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.09 E-value=0.016 Score=51.94 Aligned_cols=205 Identities=14% Similarity=0.135 Sum_probs=137.0
Q ss_pred hhhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhh-------ccCCCCC-CCChhHHHHHHHHHHh
Q 012677 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLS-------PLSPGRA-DTDPGLLEDLITTILN 240 (458)
Q Consensus 169 ~l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-------lL~~~~~-~~~~~~~~~a~~~L~~ 240 (458)
.+..+|..|. +++.|..|+..|..--...+..-..+=.+.|.+..|++ .++.+.- .....-..+|+..|..
T Consensus 4 ~i~qli~~L~-~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 4 KIYQWINELS-SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC 82 (268)
T ss_dssp HHHHHHHHTS-STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence 4555666664 45668888877766444444444445454677766633 2222100 0112345688888888
Q ss_pred cccCchhhhhhhcCCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcCChHH
Q 012677 241 LSIHDENKRLVAENPLAIPLLIDSVRTGT-----IETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEGHPLA 313 (458)
Q Consensus 241 ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~ 313 (458)
++.|++.|..+..+. +.--|-.+|+..+ +-+|-.+.+++..|...++. -..+.+.+.||..++.++.|+.-.
T Consensus 83 vAshpetr~~Fl~a~-iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 83 VASHPETRSAFLAAH-IPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHCTTTHHHHHHTT-GGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHcCcchhhHHHHcc-chHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 999999999999985 5555667777653 56899999999999987643 334556889999999999999999
Q ss_pred HHHHHHHHHHhcccccchhHHHh--------hCcHHHHHHHhc-cC--CcHHHHHHHHHHhcCCHHHHHHHHh
Q 012677 314 MKDVASAIFSLCILLENKRRAVH--------AGAVRVILRKIM-EN--SLVDELLAILAMLSSHQDAIEEIGE 375 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~~~~~~i~~--------~g~v~~Lv~ll~-~~--~~~~~a~~~L~~La~~~~~~~~i~~ 375 (458)
+.-|.-.+..+-.++.+..-+.. ..++..+|.-+. ++ .+.+..+++-..|+.++..|+.+..
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999998888777654333221 123444444333 23 3567788888888888888877743
No 158
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.74 E-value=0.055 Score=57.97 Aligned_cols=168 Identities=12% Similarity=0.037 Sum_probs=109.4
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcc
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
++..|+..+.+. .+..+++.++..|+.+..+.+ ..++.+++.|.. .++-+|..++.++.--...
T Consensus 508 ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaG--- 572 (963)
T 4ady_A 508 AIHDMFTYSQET---QHGNITRGLAVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAG--- 572 (963)
T ss_dssp HHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC---
Confidence 345555544332 255677777777766654433 366778887765 5677777776665432221
Q ss_pred hhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhcc-C--CcHHHHHHHHHHhcC
Q 012677 290 KLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME-N--SLVDELLAILAMLSS 365 (458)
Q Consensus 290 ~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~-~--~~~~~a~~~L~~La~ 365 (458)
.++..+|+.|+..+.+ .+..+|..|+.+|..+...++ ..++.++++|.+ + .++..+..+|..++.
T Consensus 573 ---TGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 573 ---TGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp ---SCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred ---CCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 1223467777776654 477899999999998866553 245666765643 3 578889999998865
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRT 411 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 411 (458)
..... .++..|..++.+. +..++..|+-+|..+..+..+
T Consensus 642 Gn~~~------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 642 GKGLQ------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp SSCCH------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCT
T ss_pred CCCcH------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCcc
Confidence 32221 1356667777755 599999999999999887654
No 159
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.74 E-value=0.0011 Score=59.80 Aligned_cols=49 Identities=16% Similarity=0.452 Sum_probs=39.4
Q ss_pred ccccccccccccCCccCC-CcccccHHHHHHHHhcC-CCCCCCCCccCCCC
Q 012677 79 EFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEG-NRTCPQTRQVLSHT 127 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~-~~~CP~c~~~l~~~ 127 (458)
-..|.||.++...-+.-+ |+|.||..|+..|++.. ...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 346999999888655443 99999999999999753 45899999987643
No 160
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.57 E-value=0.29 Score=41.58 Aligned_cols=215 Identities=12% Similarity=0.101 Sum_probs=137.6
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCc
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
..+..++.+|.+. -=.++.+|+..+.+++..-+. +.+. .+..|+.+++. .........+.++.-++...+
T Consensus 32 ~~l~~lI~~LDDD----lwtV~kNAl~vi~~i~~~~~e---l~ep--l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 32 SVLKKLIELLDDD----LWTVVKNAISIIMVIAKTRED---LYEP--MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCGG---GHHH--HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhccH----HHHHHHhHHHHHHHHHHHhHH---HHHH--HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 4566677777652 226899999999988865432 2221 34446666554 466666667777777765321
Q ss_pred chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCc--HHHHHHHHHHhcCC
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSL--VDELLAILAMLSSH 366 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~--~~~a~~~L~~La~~ 366 (458)
.++ .+.+|.|..-.+-|+++.+.+...+|..++...+.- -.+++.-+..++.+++- +-.++..+..|..
T Consensus 103 ---e~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGe- 173 (253)
T 2db0_A 103 ---ELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGE- 173 (253)
T ss_dssp ---HHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT-
T ss_pred ---HHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-
Confidence 111 234666666666789999999999999987655422 23466778888887753 2234444444433
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 367 QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 367 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
+.-..+. -.+|.|..+|.+. ++-++..|+.+|.+|+..++. .+.++. .-++=+.+.|+.++.+....|.
T Consensus 174 --n~~~yv~-PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npk-lRkii~------~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 174 --NSFKYVN-PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDK-LRKVVI------KRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp --TTHHHHG-GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHH-HHHHHH------HHHHHCCCSCHHHHHHHHHHHH
T ss_pred --cCccccC-cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHH-HHHHHH------HHHHHhcCcHHHHHHHHHHHHH
Confidence 3223322 2479999999965 599999999999999998863 444432 2233345667788888888887
Q ss_pred HHHhhHh
Q 012677 447 RLNKAAL 453 (458)
Q Consensus 447 ~l~~~~~ 453 (458)
.+.-...
T Consensus 243 rl~l~e~ 249 (253)
T 2db0_A 243 RLLLLEG 249 (253)
T ss_dssp HHHHC--
T ss_pred HHHHHhc
Confidence 7764433
No 161
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.57 E-value=0.001 Score=51.54 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=28.6
Q ss_pred Cccccccccc-cccCCcc--CCCcccccHHHHHHHHh
Q 012677 78 YEFRCPISGE-IMTDPVV--LANGQTFDRPCIQRWLD 111 (458)
Q Consensus 78 ~~~~C~ic~~-~~~~p~~--l~cgh~fc~~ci~~~~~ 111 (458)
++..|+||.+ ++.+|+. +.|||+||+.|+..+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4578999996 4788988 89999999999998543
No 162
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.14 E-value=0.083 Score=57.84 Aligned_cols=258 Identities=10% Similarity=0.051 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCC--CCCCChhHHHHHHHHHHhcccCchhhhhhhc----CC
Q 012677 182 SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPG--RADTDPGLLEDLITTILNLSIHDENKRLVAE----NP 255 (458)
Q Consensus 182 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~----~~ 255 (458)
..|..|...|..++...+ ..+.. -.++.+...+... ....+-..++.|+.+++.++.+......-.. ..
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 345667777777776532 11211 1223333333310 0012456788999999988753211110000 00
Q ss_pred CCHHH----HHHHHhcC---CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc
Q 012677 256 LAIPL----LIDSVRTG---TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 256 ~~i~~----Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 328 (458)
...+. ++..|.++ ++-+|..|+++|..++..- .... -..+++.++..|.+.++.++..|+.+|.+++...
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 13332 33345655 7899999999999998642 1111 2346788888888878999999999999998742
Q ss_pred c---------chhHHHh--hCcHHHHHHHhccC-------CcHHHHHHHHHHhcCC--HHHHHHHHhcCCHHHHHHHHhh
Q 012677 329 E---------NKRRAVH--AGAVRVILRKIMEN-------SLVDELLAILAMLSSH--QDAIEEIGELGAIPCLLRIIRE 388 (458)
Q Consensus 329 ~---------~~~~i~~--~g~v~~Lv~ll~~~-------~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~ll~~ 388 (458)
+ .+..+.. ...++.|+.++... ...+.++.+|..++.. ++... +.. ..++.|+..+..
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~ 605 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTI 605 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHH
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHH
Confidence 2 1222322 35666677777653 1345566666665431 11111 111 134555555542
Q ss_pred ----cCChhHHhHHHHHHHHHhcc-CchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 389 ----STCERNKENCAAILYNICFT-DRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 389 ----~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.++......++.+|..++.. .++....+. ...++++..++..........+..++..+.+.
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 33456666788888888775 333332332 45677788877765455566666666665543
No 163
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0099 Score=56.29 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=51.8
Q ss_pred CCccccccccccccCCccC-CCccc--ccHHHHHHHHhc-CCCCCCCCCccCCCCCCcccHHHHHHHH
Q 012677 77 PYEFRCPISGEIMTDPVVL-ANGQT--FDRPCIQRWLDE-GNRTCPQTRQVLSHTVLIPNHLVREMIS 140 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l-~cgh~--fc~~ci~~~~~~-~~~~CP~c~~~l~~~~~~~n~~l~~~i~ 140 (458)
.-.+.||+....|..|+.- .|.|. |+...+...... +.-.||+|.+.+....+..+..+..++.
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 3467899999999999975 69997 777777666543 3458999999999999999988877764
No 164
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.03 E-value=0.018 Score=57.44 Aligned_cols=243 Identities=10% Similarity=0.023 Sum_probs=150.2
Q ss_pred hhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchh--hhhhhhccCChHHHhhcc-----CCCCCC-CChhHHHHHHHHHHh
Q 012677 170 LNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLF--RALFGESTDAIPLLLSPL-----SPGRAD-TDPGLLEDLITTILN 240 (458)
Q Consensus 170 l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~~g~i~~Lv~lL-----~~~~~~-~~~~~~~~a~~~L~~ 240 (458)
...|+..| ++..+.|.-|+..|+.+.+..... +..... ....-.|+.+| .+..++ --..+++.++.+|+.
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N-~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVD-SKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCC-TTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceecccc-HHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 34444444 567899999999999888764321 111111 12233333333 111111 125889999999988
Q ss_pred cccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHH
Q 012677 241 LSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVAS 319 (458)
Q Consensus 241 ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~ 319 (458)
+ .+-+.. . .++..++..+..+.-+++..+.-.|.++ ...+.+ .++++.++..|.+.+.+++..|+.
T Consensus 255 L-~hLp~e-----~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP-----N-DIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS-----C-CHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh-----H-HHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 654433 2 2555566556777899999999999998 222222 667888888999999999999999
Q ss_pred HHHHhcccccchhHHHhhCcHHHHHHHhcc--C--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHH
Q 012677 320 AIFSLCILLENKRRAVHAGAVRVILRKIME--N--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNK 395 (458)
Q Consensus 320 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~--~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 395 (458)
+|.-++ .++... .++..+-+.|.+ + ......+.+|..|+..+.. .......||.|--+++++- .+++
T Consensus 322 tLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtI-TSVR 392 (800)
T 3oc3_A 322 LLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPV-PEVR 392 (800)
T ss_dssp HHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSS-HHHH
T ss_pred Hhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCc-HHHH
Confidence 999998 221111 223333333432 2 3466677788888775521 1112356888888888764 9999
Q ss_pred hHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 396 ENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 396 ~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
..++.+|..+. . . .++. -...+++-..++.+++.+..+-+
T Consensus 393 ~AVL~TL~tfL--~-~---~~LR-----LIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS--E-E---SIDF-----LVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC--C-H---HHHH-----HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--h-h---hHHH-----HHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999998877 1 1 1111 12344555667777777766653
No 165
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.16 Score=46.72 Aligned_cols=184 Identities=14% Similarity=0.134 Sum_probs=112.2
Q ss_pred hHHhh-cCCcHHHHHHHHHHHHHHhhCchhh--h-hhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch--
Q 012677 173 LLEKM-SSSLSDQKEAAKELRLLTKRMPLFR--A-LFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-- 246 (458)
Q Consensus 173 Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~--~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-- 246 (458)
+-+.| +.+...|.+|+..|..+....+... . .+.......+.+-..+.+. +..++..++.+|..++..-.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds----N~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS----NVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS----SHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHhhhh
Confidence 44555 5678999999999987765433211 1 1111012234444566554 88999999998887764311
Q ss_pred ---hhhhhhcCCCCHHHHHH-HHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 247 ---NKRLVAENPLAIPLLID-SVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 247 ---~~~~i~~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
+.......+.++|.|+. .|.++...++..+..++..+......... +++.++..+.+.++.++..++..|.
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111111236777775 46777888999999888877654322222 3566667778889999999999998
Q ss_pred Hhcccccch---hHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 323 SLCILLENK---RRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 323 ~L~~~~~~~---~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
.+...-... ....-..+++.+..++.+. .++..|..++..|-.
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 875432111 1111123555667777766 688888888887755
No 166
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.49 E-value=0.2 Score=46.65 Aligned_cols=180 Identities=9% Similarity=0.049 Sum_probs=101.6
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHH-HHHh----cCCHHHHHHHHHHHHHhhcc
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLI-DSVR----TGTIETRRNAAAALFSLSAL 286 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv-~lL~----~~~~~~~~~a~~~L~~Ls~~ 286 (458)
+..|..+++. ..+.+--++-.++-+..++.....+....+. ..++ .++. .+++..+..+++++.|+-.+
T Consensus 105 l~~l~kil~W-----P~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~-~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~ 178 (304)
T 3ebb_A 105 LQILWKAINC-----PEDIVFPALDILRLSIKHPSVNENFCNEKEG-AQFSSHLINLLNPKGKPANQLLALRTFCNCFVG 178 (304)
T ss_dssp HHHHHHHHTS-----CTTTCHHHHHHHHHHTTSHHHHHHHHSTTTH-HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHcC-----CHHhHHHHHHHHHHHHcCccHHHHhhccccc-hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC
Confidence 4555555532 3455556666666666666555455443322 2233 2222 23566788999999999888
Q ss_pred CcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccc-hhHHHhhCcHHHHHHHhccC---CcHHHHHHHH
Q 012677 287 DSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLEN-KRRAVHAGAVRVILRKIMEN---SLVDELLAIL 360 (458)
Q Consensus 287 ~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~-~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L 360 (458)
...+..+.. ..+++.+...+.+.+..++..++.+++|++...-. +..-...-++..+..++... +...+++.+|
T Consensus 179 ~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 179 QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 887777664 33555555555556888999999999999874321 11001112444444555432 6778899999
Q ss_pred HHhcCCHHHHHHHHhcCCHHHHHH-HHhhcCChhHHhH
Q 012677 361 AMLSSHQDAIEEIGELGAIPCLLR-IIRESTCERNKEN 397 (458)
Q Consensus 361 ~~La~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~~ 397 (458)
.+|...+.....+.+.=.+...++ +...+...++.+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence 999874333333333322333333 3332233444443
No 167
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.91 E-value=0.17 Score=46.03 Aligned_cols=168 Identities=13% Similarity=0.102 Sum_probs=107.6
Q ss_pred cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccC-ChHHHhhccCCCCCCCChhHHHHHHHHHHhccc---Cchhhhhhhc
Q 012677 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTD-AIPLLLSPLSPGRADTDPGLLEDLITTILNLSI---HDENKRLVAE 253 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~---~~~~~~~i~~ 253 (458)
+.|...+..|+..|......++.. .+.. .+ .+..+.--+.+ .+..+...++..|..+.. ....+-.-.+
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~--~~~~-lDll~kw~~lr~~d----~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRS--LLSN-SDLLLKWCTLRFFE----TNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHH--HHHT-HHHHHHHHHHHTTS----CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHH--HHHH-HHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 556777888888888766544322 2222 11 12222212223 377888888887776532 1111111111
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchh
Q 012677 254 NPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKR 332 (458)
Q Consensus 254 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~ 332 (458)
.+-++|.|+.-+..+...+|+.+-.+|..+... .. ...++.++.-+.+.+..++..++..|..+-......
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-
Confidence 223789999988888889999988888777532 22 335677888888889999999999988885433211
Q ss_pred HHHhhCcH---HHHHHHhccC--CcHHHHHHHHHHh
Q 012677 333 RAVHAGAV---RVILRKIMEN--SLVDELLAILAML 363 (458)
Q Consensus 333 ~i~~~g~v---~~Lv~ll~~~--~~~~~a~~~L~~L 363 (458)
...++ +.+..++.+. .++..|+.++..+
T Consensus 202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 23477 9999999877 5788887777655
No 168
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.86 E-value=0.046 Score=51.61 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=52.6
Q ss_pred CCCccccccccccccCCccC-CCccc--ccHHHHHHHHhc-CCCCCCCCCccCCCCCCcccHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVL-ANGQT--FDRPCIQRWLDE-GNRTCPQTRQVLSHTVLIPNHLVREMIS 140 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l-~cgh~--fc~~ci~~~~~~-~~~~CP~c~~~l~~~~~~~n~~l~~~i~ 140 (458)
..-.+.||+....|..|+.- .|.|. |+...+.+.... +.-.||+|++.+....+..+..+..++.
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 34467899999999999875 69997 887777766643 3458999999999999999988877775
No 169
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.51 E-value=0.51 Score=42.26 Aligned_cols=141 Identities=16% Similarity=0.132 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-------CcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHH
Q 012677 314 MKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-------SLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLR 384 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-------~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~ 384 (458)
..+|+..|..++.+++-|..++++...-.|..+|... -++-.++++++.|.+ +++.-..+.+.+.||..++
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 3677788889999999999999999888888888643 357779999999987 6778888899999999999
Q ss_pred HHhhcCChhHHhHHHHHHHHHhccCchh------HHHHHHhhhhhH-HHHHHhhhCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 385 IIRESTCERNKENCAAILYNICFTDRTR------TREIMEEENANG-TLSRLAENGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 385 ll~~~~~~~~~~~a~~~L~~L~~~~~~~------~~~~~~~~g~~~-~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
.|..++ +-.|..|.-++..|-..+.+- ..++..-...+. .+..+....+++.-++..+.--.|+..+..+
T Consensus 153 ime~Gs-elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar 229 (268)
T 2fv2_A 153 IMESGS-ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAR 229 (268)
T ss_dssp HHHHSC-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHhhcc-HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHH
Confidence 999764 899999999998886654421 001111011222 2223445678888888888777777666553
No 170
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.43 E-value=0.92 Score=49.51 Aligned_cols=213 Identities=11% Similarity=0.072 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCC-CCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHH
Q 012677 184 QKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSP-GRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLI 262 (458)
Q Consensus 184 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv 262 (458)
+..+...+..+....+..-..... ..++..+..+.. +....+..+...++..+..++..+..+..+... ..++.++
T Consensus 263 k~~~~~~l~~l~~~~~~~f~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~-~~l~~li 339 (960)
T 1wa5_C 263 KSSIQELVQLYTTRYEDVFGPMIN--EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNE-SAMNNIT 339 (960)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCc-hHHHHHH
Confidence 455666676666544432111121 345555555532 111235678888888888877655443333211 1333333
Q ss_pred -----HHHhc---------C--------------CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhh------c
Q 012677 263 -----DSVRT---------G--------------TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLE------E 308 (458)
Q Consensus 263 -----~lL~~---------~--------------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~------~ 308 (458)
..+.- . ....|..|..+|..|+..-. ..+.. -.++.+-..+. +
T Consensus 340 ~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~~-~~l~~i~~~l~~~~~~~~ 416 (960)
T 1wa5_C 340 EQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVTN-IFLAHMKGFVDQYMSDPS 416 (960)
T ss_dssp HHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHHH-HHHHHHHHHHHHHHC---
T ss_pred HHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHHH-HHHHHHHHHHHHhccCcc
Confidence 22210 0 12356677777877776432 22211 13344444454 3
Q ss_pred CChHHHHHHHHHHHHhcccccchhHHHhh-----CcHHHH----HHHhccC-----CcHHHHHHHHHHhcCC--HHHHHH
Q 012677 309 GHPLAMKDVASAIFSLCILLENKRRAVHA-----GAVRVI----LRKIMEN-----SLVDELLAILAMLSSH--QDAIEE 372 (458)
Q Consensus 309 ~~~~~~~~a~~aL~~L~~~~~~~~~i~~~-----g~v~~L----v~ll~~~-----~~~~~a~~~L~~La~~--~~~~~~ 372 (458)
.+...++.|+.++..++.....+...+.. ...+.+ +..|.++ -++..++++|..++.. ++.-
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l-- 494 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL-- 494 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH--
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHH--
Confidence 46678899999999997543211100000 222222 2233433 3688899999999873 3221
Q ss_pred HHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 373 IGELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 373 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
...++.++..|.++ +..++.+|+.+|.+++..
T Consensus 495 ---~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 495 ---IELMPILATFLQTD-EYVVYTYAAITIEKILTI 526 (960)
T ss_dssp ---HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhc
Confidence 22467888888754 489999999999999874
No 171
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=94.18 E-value=0.072 Score=38.77 Aligned_cols=48 Identities=29% Similarity=0.490 Sum_probs=38.2
Q ss_pred cccccccccccc-----CCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMT-----DPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~-----~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.-.|-||.+-.- +|.+. .|+...|+.|++-=.+.++..||.|+.+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 357999998642 34333 5999999999998888899999999998863
No 172
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.18 E-value=1.1 Score=41.05 Aligned_cols=185 Identities=11% Similarity=0.138 Sum_probs=116.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCc---chhHhh-c-cCchHHHHHHhhcCChHHHHHHHHHHHHhccccc---
Q 012677 258 IPLLIDSVRTGTIETRRNAAAALFSLSALDS---NKLIIG-K-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE--- 329 (458)
Q Consensus 258 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~---~~~~i~-~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--- 329 (458)
+| |-.-|.+.+-..|..|...|..+..... ...... . ...++.+-..+.+.+..++..++.+|..++..-.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 45 6677888999999999998887654321 111111 1 2345556677888899999999999998865321
Q ss_pred -chhH--HHhhCcHHHHHHH-hccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 330 -NKRR--AVHAGAVRVILRK-IMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 330 -~~~~--i~~~g~v~~Lv~l-l~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
.+.. ..-...++.|+.- +.+. .++..+..+|..++........ .++.++..+.+ .++.++..++..|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~-Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEK-KLPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGC-SCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence 1111 2234577777764 6655 4667777777666431111011 12344445553 46999999999998
Q ss_pred HHhccCc-h--hHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 404 NICFTDR-T--RTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 404 ~L~~~~~-~--~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.+..... . .....+ ...++.+..++.+.++.+|..|..++..+.++
T Consensus 165 ~~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 8765321 1 111222 23566788888889999999999999877654
No 173
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.04 E-value=0.02 Score=39.50 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=40.0
Q ss_pred CCCCCCCCccCCCCCCc-cc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhh
Q 012677 114 NRTCPQTRQVLSHTVLI-PN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDAS 166 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~-~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (458)
++.||.|...+..+.+. ++ +. -+..|++|..+++. +|.+.+++....+.|++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~-cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSB-CTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCC-CcCCcCCCChhhcEECc
Confidence 46799999999877655 33 22 48999999998764 99999998877776654
No 174
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.03 E-value=0.38 Score=44.81 Aligned_cols=131 Identities=6% Similarity=0.016 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHHhcccccchhHHHhh--CcHHHHHHHhccC--CcHHHHHHHHHHhcCCH------HHHHHHHhcCCH
Q 012677 310 HPLAMKDVASAIFSLCILLENKRRAVHA--GAVRVILRKIMEN--SLVDELLAILAMLSSHQ------DAIEEIGELGAI 379 (458)
Q Consensus 310 ~~~~~~~a~~aL~~L~~~~~~~~~i~~~--g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~------~~~~~i~~~g~i 379 (458)
.+..+.-+++++.|+..+...+..+... .+++.+...+.+. .++..++.++.|++..- +.+.. .+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll 235 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CL 235 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HH
Confidence 5667888999999999999888877653 3444444444333 57778888999998721 11111 34
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh-CCHHHHHHHHHHHH
Q 012677 380 PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN-GTSRAKRKANGILE 446 (458)
Q Consensus 380 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~-~~~~~~~~A~~~L~ 446 (458)
..+..++....+.+....++.+|.+|...+. ....+....|+...+-++... ...++.+.|..+|.
T Consensus 236 ~~l~~il~~~~d~EalyR~LvALGtL~~~~~-~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 236 SLISTILEVVQDLEATFRLLVALGTLISDDS-NAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHhCCh-hHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4555666655568889999999999998754 455666656666555555554 35667777776664
No 175
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=93.77 E-value=0.027 Score=48.00 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=50.3
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||.|...+..+.+.|. +. -+..|..|...++..||.+..++....+.||. .++.+|+.|.
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~--~Lk~~Ie~~~ 170 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL--AMKEVIDAFI 170 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH--HHHHHHHHHH
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH--HHHHHHHHHH
Confidence 3589999999988765553 33 48999999988777899999988877888875 7888888873
No 176
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.45 E-value=1.9 Score=46.93 Aligned_cols=175 Identities=10% Similarity=0.018 Sum_probs=105.9
Q ss_pred hcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHh---hcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHH
Q 012677 266 RTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLL---EEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRV 342 (458)
Q Consensus 266 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~ 342 (458)
.+.+...++.++.++..++..-... ....++.++..+ .++++.++..++++|...+..-....... ..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 3456778999999999987643211 123344555544 23478899999999999886422212222 368888
Q ss_pred HHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHh--cCCHHHHHHHHhhc-CChhHHhHHHHHHHHHhccCc-hhHHHHHH
Q 012677 343 ILRKIMENSLVDELLAILAMLSSHQDAIEEIGE--LGAIPCLLRIIRES-TCERNKENCAAILYNICFTDR-TRTREIME 418 (458)
Q Consensus 343 Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~--~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~ 418 (458)
|+..|.++.++..|+.+|.+++. +.+..+.. ...+..|..++... -+...+...+.++..++...+ +.....+
T Consensus 534 l~~~l~~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~- 610 (963)
T 2x19_B 534 VLHALGNPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL- 610 (963)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-
T ss_pred HHHHhCCchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-
Confidence 88888777899999999999984 22222221 11233444555532 246788899999999886543 3333333
Q ss_pred hhhhhHHHHHHhh----h-CCHHHHHHHHHHHHHHH
Q 012677 419 EENANGTLSRLAE----N-GTSRAKRKANGILERLN 449 (458)
Q Consensus 419 ~~g~~~~L~~ll~----~-~~~~~~~~A~~~L~~l~ 449 (458)
...++++...+. . .++..+......+..|+
T Consensus 611 -~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 645 (963)
T 2x19_B 611 -HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS 645 (963)
T ss_dssp -HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 234455544332 2 25556665555555554
No 177
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.43 E-value=0.37 Score=43.08 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhccccc--c-hhHHHhh--------
Q 012677 270 IETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE--N-KRRAVHA-------- 337 (458)
Q Consensus 270 ~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--~-~~~i~~~-------- 337 (458)
...+..++.+|..+..+..+...+.. .++|..|+..|.+.++.++..++..|..+|..++ + ...+.++
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 45677888889988777766666655 7889999999988899999999999998887654 4 4443322
Q ss_pred --CcHHHHHHHhccC---CcHHHHHHHHHHhcCCH---HH----HHHHHhcCCHHHHHHHHhhcCChhHHh
Q 012677 338 --GAVRVILRKIMEN---SLVDELLAILAMLSSHQ---DA----IEEIGELGAIPCLLRIIRESTCERNKE 396 (458)
Q Consensus 338 --g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~---~~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 396 (458)
.-+..+++.+.+. +.+..++..+-.|..++ +. |.++...| +..+++-|+...++.+..
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMKV 217 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHHHCCCHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCCHHHHH
Confidence 3566677777644 34555666666665532 33 44445555 666667776544455443
No 178
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.17 E-value=2 Score=40.11 Aligned_cols=193 Identities=8% Similarity=0.050 Sum_probs=139.6
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhc--cCchHHHHHHhhcC--ChHHHHHHHHHHHHhcccccc
Q 012677 256 LAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGK--LGAMTPLIDLLEEG--HPLAMKDVASAIFSLCILLEN 330 (458)
Q Consensus 256 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~~ 330 (458)
+.+..|+..|..=+.+.|..++.+..++-....+ +...++ ..- +.++..|-.| ++++...+-..|.....++..
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir~e~l 156 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIRHEPL 156 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHHhHHH
Confidence 4888888888888999999999998888765422 222211 111 2233333232 566777777888888888887
Q ss_pred hhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcC---CHHHHHHHHhhcCChhHHhHHHHHHHH
Q 012677 331 KRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELG---AIPCLLRIIRESTCERNKENCAAILYN 404 (458)
Q Consensus 331 ~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 404 (458)
...+...+.+-.+.+.+..+ ++...|..++..|-. +...-..++..+ ....+-.+|.+ ++--++..+++.|..
T Consensus 157 a~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S-~NYVTkRQSlKLLge 235 (341)
T 1upk_A 157 AKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYVTKRQSLKLLGE 235 (341)
T ss_dssp HHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC-CcchhHHHHHHHHHH
Confidence 77788888888999999877 788889999988755 777666776665 35666677775 469999999999999
Q ss_pred HhccCchh--HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 405 ICFTDRTR--TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 405 L~~~~~~~--~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
|-....+. +.+.+.+..-+..+..|+.+.+..++-.|-.+.+.+-.
T Consensus 236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 98765432 33344445566778888999999999998888776553
No 179
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.58 E-value=0.061 Score=40.68 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=46.1
Q ss_pred CCCCCCCCccCCCCCCcc--cHH-HHHHHHHHHHHh-----CCCCCCCCCC---CCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIP--NHL-VREMISQWCKEH-----GIELPKPIKD---TDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~--n~~-l~~~i~~~~~~~-----~~~~p~~~~~---~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||+|...+..+...+ .+. -+..|.+|...+ ..+||.+... +....+.||. .++.+|+.|.
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~--~L~~~I~~~~ 80 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDE--ALRRAIENHN 80 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECH--HHHHHHHHHH
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCH--HHHHHHHHHH
Confidence 468999999998876543 333 488999999875 3678886654 5566677764 7888888883
No 180
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=92.38 E-value=4.7 Score=37.66 Aligned_cols=157 Identities=14% Similarity=0.069 Sum_probs=118.3
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhHHHh-----hCcHHHHHHHhccCCcHHHHHHHHHHhcC
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRRAVH-----AGAVRVILRKIMENSLVDELLAILAMLSS 365 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~-----~g~v~~Lv~ll~~~~~~~~a~~~L~~La~ 365 (458)
.+...+.+..|+..|..-+-+.++.+.....++..... ++...++ ..++..|+.--..+++.-.+=..|+....
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 45556888899999988899999999999888877553 2222222 24444444444455788888889999999
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhh--hhhHHHHHHhhhCCHHHHHHHHH
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEE--NANGTLSRLAENGTSRAKRKANG 443 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--g~~~~L~~ll~~~~~~~~~~A~~ 443 (458)
++...+.++..+.+..+.++++.+ +-++..-|..++..|-.....-+...+... -+....-.|+.+++.-+++++..
T Consensus 153 ~e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 153 HEPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 999999999988899999999965 499999999999988776654444444421 34555677889999999999999
Q ss_pred HHHHHH
Q 012677 444 ILERLN 449 (458)
Q Consensus 444 ~L~~l~ 449 (458)
+|..|-
T Consensus 232 LLgelL 237 (341)
T 1upk_A 232 LLGELL 237 (341)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 181
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.03 E-value=5.2 Score=43.46 Aligned_cols=174 Identities=9% Similarity=0.022 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHh---h--cCChHHHHHHHHHHHHhcccccchhHHHhhCcHHH
Q 012677 268 GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLL---E--EGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRV 342 (458)
Q Consensus 268 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~--~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~ 342 (458)
.+...++.++.++..++..-.... ...++.++.++ . +.++.++..++++|..++..-....... ..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 456688999999998875432111 13344444433 2 2478899999999999886432211111 245666
Q ss_pred HHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHh--cCCHHHHHHHHhhc-CChhHHhHHHHHHHHHhccCc-hhHHHHHH
Q 012677 343 ILRKIMENSLVDELLAILAMLSSHQDAIEEIGE--LGAIPCLLRIIRES-TCERNKENCAAILYNICFTDR-TRTREIME 418 (458)
Q Consensus 343 Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~--~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~ 418 (458)
|+..| ++.++..|+.+|.+++. +.+..+.. ...+..|..++... -+...+...+.++..++...+ ......+
T Consensus 551 l~~~l-~~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~- 626 (971)
T 2x1g_F 551 LVRGL-NSSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL- 626 (971)
T ss_dssp HHHHH-HSSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH-
T ss_pred HHHHh-ChHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH-
Confidence 77666 37899999999999994 33344422 23455556666642 247888999999999876432 2222222
Q ss_pred hhhhhHHHHHHh----hhC--CHHHHHHHHHHHHHHHhh
Q 012677 419 EENANGTLSRLA----ENG--TSRAKRKANGILERLNKA 451 (458)
Q Consensus 419 ~~g~~~~L~~ll----~~~--~~~~~~~A~~~L~~l~~~ 451 (458)
...++++...+ ... ++..+......|..|+..
T Consensus 627 -~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~ 664 (971)
T 2x1g_F 627 -DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTL 664 (971)
T ss_dssp -HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 22344444432 222 344556666666666544
No 182
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.91 E-value=1.6 Score=42.83 Aligned_cols=133 Identities=16% Similarity=0.211 Sum_probs=93.9
Q ss_pred hhhhhhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 166 SRSHLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 166 ~~~~l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+....+.++..-+++..+++-|...|..+-+.-|.... .++..++++..+. |..++..|+..|-.+|++
T Consensus 27 ~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~------~Ai~a~lDLcEDe----d~~IR~qaik~Lp~~ck~- 95 (507)
T 3u0r_A 27 HKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELAD------SAINAQLDLCEDE----DVSIRRQAIKELPQFATG- 95 (507)
T ss_dssp GHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHH------HHHHHHHHHHTCS----SHHHHHHHHHHGGGGCCT-
T ss_pred cHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcc----cHHHHHHHHHhhHHHhhh-
Confidence 44566777777778899999999999999998887753 5677899999874 899999999999999988
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
++... +...|+++|...+..-....-.+|..|-..|.. |.+..|..-+..+++.+|+.++.-|.
T Consensus 96 ~~i~k------iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk-------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 96 ENLPR------VADILTQLLQTDDSAEFNLVNNALLSIFKMDAK-------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp TCHHH------HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hhhhh------HHHHHHHHHhccchHHHHHHHHHHHHHHhcChH-------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 44333 455689999988877777676777666544321 22233333333345555655555543
No 183
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.80 E-value=0.98 Score=43.55 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=96.6
Q ss_pred hhhhhhcCCCCHHHHHHHHhc-----------CCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHH
Q 012677 247 NKRLVAENPLAIPLLIDSVRT-----------GTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAM 314 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~ 314 (458)
....|+ .+ |+..|+.+|.. .+...+..++.+|..|..+..+...+.. ..+|..|+..|.+..+.++
T Consensus 102 WV~~F~-~~-Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~ 179 (383)
T 3eg5_B 102 WVQTFG-AE-GLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 179 (383)
T ss_dssp HHHHHH-HH-HHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHHH-Hc-cHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence 345555 43 67778888752 1346778888999998777666665555 8899999999999999999
Q ss_pred HHHHHHHHHhccccc--c-hhHHHh----------hCcHHHHHHHhccC---CcHHHHHHHHHHhcCC---HHH----HH
Q 012677 315 KDVASAIFSLCILLE--N-KRRAVH----------AGAVRVILRKIMEN---SLVDELLAILAMLSSH---QDA----IE 371 (458)
Q Consensus 315 ~~a~~aL~~L~~~~~--~-~~~i~~----------~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~---~~~----~~ 371 (458)
..++..|..+|..++ + ...+++ ..-+..++..|.++ +....++..+-.+... -+. |.
T Consensus 180 ~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ 259 (383)
T 3eg5_B 180 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 259 (383)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999887654 3 444333 24577888888764 3455566666666553 233 44
Q ss_pred HHHhcCCHHHHHHHHhhcCChhH
Q 012677 372 EIGELGAIPCLLRIIRESTCERN 394 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~~~~~~~ 394 (458)
++...| +..++.-|+...++.+
T Consensus 260 ef~~~G-l~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 260 ELMRLG-LHQVLQELREIENEDM 281 (383)
T ss_dssp HHHHTT-HHHHHHHHTTSCCHHH
T ss_pred HHHHCC-hHHHHHHHhcCCChhH
Confidence 445566 5555555765443443
No 184
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=91.66 E-value=0.098 Score=38.68 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=47.8
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||.|...+..+...+. +. -+..|..|... ..++|.+.+.+....+.||. .++.+|+.|.
T Consensus 14 ~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~--~L~~~i~~~~ 77 (85)
T 2kr4_A 14 EFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVP--ELKEQIQAWM 77 (85)
T ss_dssp TTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECH--HHHHHHHHHH
T ss_pred heECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHH--HHHHHHHHHH
Confidence 5689999999988755443 32 48899999986 56899998888877777774 7888888873
No 185
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.91 E-value=1.1 Score=49.01 Aligned_cols=215 Identities=14% Similarity=0.068 Sum_probs=117.1
Q ss_pred CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCC-CCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCH
Q 012677 180 SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGR-ADTDPGLLEDLITTILNLSIHDENKRLVAENPLAI 258 (458)
Q Consensus 180 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i 258 (458)
+...+..|+..+..++..-.... ...++.++.++..-. .+.++.++..++++|+.++..-........ .++
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~------~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl 548 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE------KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAI 548 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh------hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHH
Confidence 34566677777777665432211 122333333321110 013678999999999988743211112222 256
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcC--ChHHHHHHHHHHHHhcccc--cchh
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEG--HPLAMKDVASAIFSLCILL--ENKR 332 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~--~~~~ 332 (458)
+.|+..|. +.++..|+.++.+|+.. .+..+.. .+.+..|..++..+ +...+..+..++..++..- +...
T Consensus 549 ~~l~~~l~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGLN---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHHH---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHhC---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 66777773 57899999999999853 2333432 45666677777764 5678888888888887532 2222
Q ss_pred HHHhhCcHHHHHHHhc----cC----CcHHHHHHHHHHhcC---CH-----HHH------HHH--HhcCCHHHHHHHHhh
Q 012677 333 RAVHAGAVRVILRKIM----EN----SLVDELLAILAMLSS---HQ-----DAI------EEI--GELGAIPCLLRIIRE 388 (458)
Q Consensus 333 ~i~~~g~v~~Lv~ll~----~~----~~~~~a~~~L~~La~---~~-----~~~------~~i--~~~g~i~~Lv~ll~~ 388 (458)
..+ ...++++++.+. .. +........|..|+. .- +.. ..+ .-...++.+..++..
T Consensus 624 ~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence 222 234455554443 21 122333444433332 10 000 001 223467777777764
Q ss_pred c-CChhHHhHHHHHHHHHhcc
Q 012677 389 S-TCERNKENCAAILYNICFT 408 (458)
Q Consensus 389 ~-~~~~~~~~a~~~L~~L~~~ 408 (458)
. .+..+.+.+++++..++..
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHh
Confidence 3 3578999999999997753
No 186
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=90.54 E-value=0.51 Score=47.23 Aligned_cols=206 Identities=9% Similarity=-0.003 Sum_probs=128.6
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch---hhhhhhcCC-CCHHHHHHHHh---cC-------CHHHHHHHH
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE---NKRLVAENP-LAIPLLIDSVR---TG-------TIETRRNAA 277 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~---~~~~i~~~~-~~i~~Lv~lL~---~~-------~~~~~~~a~ 277 (458)
.+.|+.-|-+. .=+++..|+.+|+.+.+... .+. .... ...-.|+-+|. .+ -..+|+.++
T Consensus 176 cE~L~~DLFdp----~WEiRHGAALGLREILR~hG~GAGR~--~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaA 249 (800)
T 3oc3_A 176 FEQISDNLLSY----EWYKRHGAFLAFAAMFSEIDNGGDIQ--IRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAA 249 (800)
T ss_dssp THHHHHHTTCS----SHHHHHHHHHHHHHHHHHCC----CC--CCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHH
T ss_pred HHHHHHHhcCc----chhhhhHHHHHHHHHHHHhccCCcee--ccccHHHHHHHHHHHHhccccccccCeeeeehHHHHH
Confidence 44455444443 34888888888887654322 111 1111 12233333331 11 268999999
Q ss_pred HHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHH
Q 012677 278 AALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDE 355 (458)
Q Consensus 278 ~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~ 355 (458)
.+|..+ .+-+.. ..++..|+..+..+.-+++..++-.|.++ .+-... =.++++.++..|.+. +++..
T Consensus 250 QtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAV 318 (800)
T 3oc3_A 250 YLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLL 318 (800)
T ss_dssp HHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHH
Confidence 999998 543332 34566666656677889999999999999 221111 246788888888876 78999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCHHHHHHHH----hhcCC-hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHh
Q 012677 356 LLAILAMLSSHQDAIEEIGELGAIPCLLRII----RESTC-ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA 430 (458)
Q Consensus 356 a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll----~~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll 430 (458)
|+.+|.-++ ....++.|+..+ .+.++ .......+..|+.|+..+.... .....+|.|...+
T Consensus 319 AAetLiPIA----------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~----~dp~LVPRL~PFL 384 (800)
T 3oc3_A 319 SAELLCHFP----------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS----IPPERLKDIFPCF 384 (800)
T ss_dssp HHHHHTTSC----------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC----CCSGGGGGTGGGG
T ss_pred HHHHhhhhc----------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc----cChHHHHHHHhhh
Confidence 999999988 223455555444 33221 2223455678888888774211 1246788888888
Q ss_pred hhCCHHHHHHHHHHHHHH
Q 012677 431 ENGTSRAKRKANGILERL 448 (458)
Q Consensus 431 ~~~~~~~~~~A~~~L~~l 448 (458)
.+.-..+|..+..+|..+
T Consensus 385 RHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 385 TSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp TCSSHHHHHHHHHHTTTC
T ss_pred cCCcHHHHHHHHHHHHHH
Confidence 888888998888777554
No 187
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=90.53 E-value=0.086 Score=40.19 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=47.5
Q ss_pred CCCCCCCCccCCCCCCccc--HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhh
Q 012677 114 NRTCPQTRQVLSHTVLIPN--HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKM 177 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n--~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l 177 (458)
.+.||.|...+..+...+. +. -+..|..|... ..+||.+.+++....+.||. .++.+|+.|
T Consensus 22 ~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~--~Lk~~I~~~ 85 (98)
T 1wgm_A 22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNT--ELKEKIQRW 85 (98)
T ss_dssp TTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECH--HHHHHHHHH
T ss_pred hcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcH--HHHHHHHHH
Confidence 5689999999988765553 33 48899999876 45799998888877777774 788888887
No 188
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=90.35 E-value=0.092 Score=40.17 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=48.1
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||.|...+..+...+. +. -+..|..|... ..+||.+.+++....+.||. .++.+|+.|.
T Consensus 29 ~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~--~Lk~~I~~~~ 92 (100)
T 2kre_A 29 EFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVP--ELKEQIQAWM 92 (100)
T ss_dssp TTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECH--HHHHHHHHHH
T ss_pred hhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECH--HHHHHHHHHH
Confidence 5689999999988765543 22 48899999874 56899998888877787775 7888888883
No 189
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=90.13 E-value=0.37 Score=34.23 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=29.5
Q ss_pred CCccccccccccccCCccCCC----cccccHHHHHHHHhc
Q 012677 77 PYEFRCPISGEIMTDPVVLAN----GQTFDRPCIQRWLDE 112 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~c----gh~fc~~ci~~~~~~ 112 (458)
...+.|.+|.+-++|--.+.| +|.||-.|-+.+++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 456789999999999765543 799999999988874
No 190
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=89.21 E-value=2.2 Score=37.90 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=87.9
Q ss_pred hhhhhhhhccCChHHHhhccCCC----CC---CCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHH
Q 012677 200 LFRALFGESTDAIPLLLSPLSPG----RA---DTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIET 272 (458)
Q Consensus 200 ~~~~~i~~~~g~i~~Lv~lL~~~----~~---~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~ 272 (458)
..-..+ . .+|+..|+..|... .. ..+...+...+.+|..+..+......+......+..|+..|.+++..+
T Consensus 35 ~Wv~~F-~-~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 112 (233)
T 2f31_A 35 SWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 112 (233)
T ss_dssp HHHHHH-H-HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred HHHHHH-H-HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 344445 4 47777777777431 11 124566778888998888888778888887778999999999999999
Q ss_pred HHHHHHHHHHhhccCc--c-hhHh----------hccCchHHHHHHhhc-CChHHHHHHHHHHHHhccccc
Q 012677 273 RRNAAAALFSLSALDS--N-KLII----------GKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLE 329 (458)
Q Consensus 273 ~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~ 329 (458)
+..+..+|..++...+ + ...+ .+..-+..++..|++ .+.+.+..++..+-.+....+
T Consensus 113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCC
Confidence 9999999998887654 3 3332 223456678887764 355666666666655555443
No 191
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.20 E-value=1.8 Score=39.30 Aligned_cols=133 Identities=8% Similarity=0.057 Sum_probs=86.7
Q ss_pred cCCcHHHHHHHHHHHHHH----hhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhc
Q 012677 178 SSSLSDQKEAAKELRLLT----KRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAE 253 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~----~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~ 253 (458)
+++..+...++..|..+. ...+.....-+ .-.+|.|+.-+..+ ...+++.+-.+|..+..- ..
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea--~~~lP~LveKlGd~----k~~vR~~~r~il~~l~~v-------~~ 164 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEV--SAFVPYLLLKTGEA----KDNMRTSVRDIVNVLSDV-------VG 164 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHGGGCS----SHHHHHHHHHHHHHHHHH-------HC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHH--HHHHHHHHHHhCCC----hHHHHHHHHHHHHHHHHH-------CC
Confidence 355666666666665543 22222222111 24678888888654 567777777776655421 11
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCch---HHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 254 NPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAM---TPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 254 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i---~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
...+.+.++.-+++.|..+|+.++..+..+-... +.. ...++ +.+..++.+.+..+|..|+.++..+-..
T Consensus 165 ~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~-G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 165 PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA-GIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH-CSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc-CCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1125566777778889999999999888875432 111 24478 9999999999999999999998876543
No 192
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.20 E-value=1.9 Score=41.63 Aligned_cols=126 Identities=19% Similarity=0.230 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhccccc--c-hhHHHh---------
Q 012677 270 IETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE--N-KRRAVH--------- 336 (458)
Q Consensus 270 ~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--~-~~~i~~--------- 336 (458)
......++.+|..|..+..+...+.. .++|..|+..|.+.++.++..++..|..+|..++ + ...+++
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 46677788889888777666666555 7889999999988899999999999988887654 3 333322
Q ss_pred -hCcHHHHHHHhccC---CcHHHHHHHHHHhcCCH---HH----HHHHHhcCCHHHHHHHHhhcCChhHHh
Q 012677 337 -AGAVRVILRKIMEN---SLVDELLAILAMLSSHQ---DA----IEEIGELGAIPCLLRIIRESTCERNKE 396 (458)
Q Consensus 337 -~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~---~~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 396 (458)
..-+..||+.+.+. +....++..+-.|...+ +. |.++...| +..++.-|+...++.+..
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G-L~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMKV 221 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-HHHHHHHHTTCCCHHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCChhHHH
Confidence 24566788888754 35556666666665532 23 44555556 666666666544454443
No 193
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.09 E-value=28 Score=37.58 Aligned_cols=210 Identities=15% Similarity=0.121 Sum_probs=121.9
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHH---hcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHH
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSV---RTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPL 302 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL---~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~L 302 (458)
+-..++.++.+++.++..-... .. ..++.++..+ ..+++.++..++++|..++..- ++...+ ..+++.|
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~----~~-~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l 534 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVN----YS-DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLV 534 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSS----CC-SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCch----hh-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHH
Confidence 5678888999999888653321 11 2555566554 2346789999999999887532 122222 4678888
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcccccchhHHHh--hCcHHHHHHHhccC----CcHHHHHHHHHHhcC-C-HHHHHHHH
Q 012677 303 IDLLEEGHPLAMKDVASAIFSLCILLENKRRAVH--AGAVRVILRKIMEN----SLVDELLAILAMLSS-H-QDAIEEIG 374 (458)
Q Consensus 303 v~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~--~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~-~-~~~~~~i~ 374 (458)
+..|.+ +.++..|+.+|.+++..-. ..+.. ...+..|..++..+ ..+..++.++..++. . ++.....+
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~ 610 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL 610 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 888854 8899999999999985322 22221 24555556666643 355667777787765 2 34444443
Q ss_pred hcCCHHHHHHHHh----hcCChhHHh---HHHHHHHHHhccCc----------------------hhHHHHHHhhhhhHH
Q 012677 375 ELGAIPCLLRIIR----ESTCERNKE---NCAAILYNICFTDR----------------------TRTREIMEEENANGT 425 (458)
Q Consensus 375 ~~g~i~~Lv~ll~----~~~~~~~~~---~a~~~L~~L~~~~~----------------------~~~~~~~~~~g~~~~ 425 (458)
+. .++.+...+. ...+++.+. ..+.+|..+...-. .....+. ....+.
T Consensus 611 ~~-l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 687 (963)
T 2x19_B 611 HS-LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL--QQVFQL 687 (963)
T ss_dssp HH-HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH--HHHHHH
T ss_pred HH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH--HHHHHH
Confidence 22 3455554443 222344444 33444444433211 0011121 335556
Q ss_pred HHHHhhh--CCHHHHHHHHHHHHHHHh
Q 012677 426 LSRLAEN--GTSRAKRKANGILERLNK 450 (458)
Q Consensus 426 L~~ll~~--~~~~~~~~A~~~L~~l~~ 450 (458)
+..++.. .+..+.+.++.+++.+..
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 6666543 467888888888887654
No 194
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=87.98 E-value=5.1 Score=38.48 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=106.0
Q ss_pred HHHHHHHHHhhCc-hhhhhhhhccCChHHHhhccCC----CC---CCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCH
Q 012677 187 AAKELRLLTKRMP-LFRALFGESTDAIPLLLSPLSP----GR---ADTDPGLLEDLITTILNLSIHDENKRLVAENPLAI 258 (458)
Q Consensus 187 a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~----~~---~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i 258 (458)
.+..|+...+.++ ..-..+. .+|+..|+++|.. +. ...+...+...+.+|..+..+......+......+
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~--~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG--AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHhhCccHHHHHHH--HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence 4555553333333 3444454 4678888888742 11 02355777888899999888888888888888899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCc--c-hhHh----------hccCchHHHHHHhhcC-ChHHHHHHHHHHHHh
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSALDS--N-KLII----------GKLGAMTPLIDLLEEG-HPLAMKDVASAIFSL 324 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L 324 (458)
..|+..|.+.++.++..+..+|..++...+ + ...+ ++..-+..++..|.++ +.+.+..++..+-.+
T Consensus 165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l 244 (383)
T 3eg5_B 165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 244 (383)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999887654 2 3222 2345678889988874 667777666666666
Q ss_pred ccccc---chhH----HHhhCcHHHHHHHhcc
Q 012677 325 CILLE---NKRR----AVHAGAVRVILRKIME 349 (458)
Q Consensus 325 ~~~~~---~~~~----i~~~g~v~~Lv~ll~~ 349 (458)
....+ .|.. +...|..+.+-. |+.
T Consensus 245 i~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 245 ITPAEELDFRVHIRSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred HcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence 55443 2222 444566555554 554
No 195
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=87.72 E-value=0.27 Score=36.24 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=36.4
Q ss_pred CccccccccccccCCccCC-CcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 78 YEFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.-+.|-.|....+. .+. ..|..|..|+...+.. +..||+|+.+++..
T Consensus 27 G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred CcccChhhccccCC--eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 45678888876663 344 5699999999998875 55799999998754
No 196
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=87.60 E-value=0.22 Score=45.76 Aligned_cols=63 Identities=8% Similarity=0.092 Sum_probs=49.5
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||.|...+..+.+.|. ++ .+..|..|...++..||.+..++....+.||. .++.+|+.|.
T Consensus 208 ~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~--~l~~~i~~~~ 272 (281)
T 2c2l_A 208 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL--AMKEVIDAFI 272 (281)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECH--HHHHHHHHHH
T ss_pred ccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccH--HHHHHHHHHH
Confidence 4589999999988765543 22 48889999988777799999888877777774 7888888884
No 197
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=86.97 E-value=0.31 Score=43.85 Aligned_cols=59 Identities=14% Similarity=0.002 Sum_probs=32.8
Q ss_pred CchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHH
Q 012677 198 MPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAA 277 (458)
Q Consensus 198 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~ 277 (458)
++..|..... .=....|..++.+. +..++..++..| . .+.|..+++.++..+|..++
T Consensus 63 ~~~VR~~AA~-~l~~~~l~~L~~D~----~~~VR~~aA~~L---~---------------~~~L~~ll~D~d~~VR~~aA 119 (244)
T 1lrv_A 63 FWERRAIAVR-YSPVEALTPLIRDS----DEVVRRAVAYRL---P---------------REQLSALMFDEDREVRITVA 119 (244)
T ss_dssp SHHHHHHHHT-TSCGGGGGGGTTCS----SHHHHHHHHTTS---C---------------SGGGGGTTTCSCHHHHHHHH
T ss_pred CHHHHHHHHH-hCCHHHHHHHccCc----CHHHHHHHHHHC---C---------------HHHHHHHHcCCCHHHHHHHH
Confidence 3445555554 22344455555553 777777776532 1 13355666677777777766
Q ss_pred HH
Q 012677 278 AA 279 (458)
Q Consensus 278 ~~ 279 (458)
..
T Consensus 120 ~~ 121 (244)
T 1lrv_A 120 DR 121 (244)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 198
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=86.10 E-value=3.6 Score=45.24 Aligned_cols=216 Identities=12% Similarity=0.047 Sum_probs=125.3
Q ss_pred hhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC---
Q 012677 169 HLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH--- 244 (458)
Q Consensus 169 ~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~--- 244 (458)
.+..+++.+ +++...|.+|-..|..+-.. .++...+..+|..+ .+..++--|+..|.+....
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-----------p~~~~~l~~iL~~s---~~~~vr~~aa~~Lk~~i~~~W~ 82 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----------PDAWQKADQILQFS---TNPQSKFIALSILDKLITRKWK 82 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-----------TTGGGGHHHHHHHC---SCHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhC-----------chHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHhhCc
Confidence 455555554 45666777888888766543 34555555666442 3778888999999886532
Q ss_pred ---chhhhhhhcCCCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHH
Q 012677 245 ---DENKRLVAENPLAIPLLIDSVRTG-----TIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMK 315 (458)
Q Consensus 245 ---~~~~~~i~~~~~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~ 315 (458)
++.+..+... ++..+...-..+ +..++...+.++..++..+-. .. .+.++.|+.+++ .++..+.
T Consensus 83 ~l~~~~~~~ir~~--ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p----~~Wp~ll~~L~~~~~-~~~~~~~ 155 (1049)
T 3m1i_C 83 LLPNDHRIGIRNF--VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSS-SSVNVCE 155 (1049)
T ss_dssp GSCHHHHHHHHHH--HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHT-TCHHHHH
T ss_pred cCCHHHHHHHHHH--HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHHc-cChHHHH
Confidence 2233333221 333333221111 356788888888888765311 12 568899999886 5556677
Q ss_pred HHHHHHHHhccccc---------ch-----hHHHhh--CcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhc
Q 012677 316 DVASAIFSLCILLE---------NK-----RRAVHA--GAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGEL 376 (458)
Q Consensus 316 ~a~~aL~~L~~~~~---------~~-----~~i~~~--g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~ 376 (458)
.++.+|..|+..-. .+ ..+.+. .++..+.+++.+. .++..++.++......-+ -..+.+.
T Consensus 156 ~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~-~~~~~~~ 234 (1049)
T 3m1i_C 156 NNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP-YRYIYET 234 (1049)
T ss_dssp HHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSS
T ss_pred HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-HHHHhhh
Confidence 78888887763211 11 112221 2334444455433 467778888877655222 1224445
Q ss_pred CCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 377 GAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 377 g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
..++.+.+.+.. ++.++..|+.+|..+...
T Consensus 235 ~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 235 NILELLSTKFMT--SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp SHHHHHHTHHHH--SHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHhCC--CHhHHHHHHHHHHHHHhC
Confidence 556666633332 378889999999888865
No 199
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=85.94 E-value=0.34 Score=34.78 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=44.7
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhh
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKM 177 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l 177 (458)
...||.|...+..+...+- +. .+.-|.+|...+...||..........+.+|. .++.+|+.|
T Consensus 8 ~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~--~l~~~i~~~ 71 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY--VLKSLIALW 71 (78)
T ss_dssp SSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECT--TTHHHHHHH
T ss_pred cCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCH--HHHHHHHHH
Confidence 4589999999877644442 22 37889999986677899887777666666653 677787776
No 200
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=85.81 E-value=16 Score=40.09 Aligned_cols=140 Identities=11% Similarity=0.017 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhc-----CChHHHHHHHHHHHHhcccccchhHHHhhCcHH
Q 012677 268 GTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEE-----GHPLAMKDVASAIFSLCILLENKRRAVHAGAVR 341 (458)
Q Consensus 268 ~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~ 341 (458)
.+-..++.++++++.++..... ...-.-..+++.|+.++.. ....++..++++|...+..-....... ..++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 4688999999999999865432 2222224578889998864 233455567788887765432222221 13455
Q ss_pred HHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHh------cCCHHHHHHHHhh---cCChhHHhHHHHHHHHHhccCc
Q 012677 342 VILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGE------LGAIPCLLRIIRE---STCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 342 ~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~------~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
.|++.|.++ .++..|+.+|.+||. +.+..+.. ..-++.++..+.. .-+.........++..+....+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 555555443 589999999999986 34444442 1124444443321 1236667788888888887665
No 201
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=85.48 E-value=15 Score=40.00 Aligned_cols=210 Identities=8% Similarity=-0.018 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHhcccCchh-hhhhhcC----CCCHHHHHHHHh-----cCCHHHHHHHHHHHHHhhccCcchhHhhccCc
Q 012677 229 GLLEDLITTILNLSIHDEN-KRLVAEN----PLAIPLLIDSVR-----TGTIETRRNAAAALFSLSALDSNKLIIGKLGA 298 (458)
Q Consensus 229 ~~~~~a~~~L~~ls~~~~~-~~~i~~~----~~~i~~Lv~lL~-----~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~ 298 (458)
...|.++.+|..++..-.+ ...+... ...++.++.+++ .+.+.++..++.++...+..=.. ....
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-----~~~~ 532 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-----ESAA 532 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-----CCTT
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-----Cchh
Confidence 5577788888777754322 1111011 123444455555 45789999999999887653221 2456
Q ss_pred hHHHHHHhhc------CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--------C-------------
Q 012677 299 MTPLIDLLEE------GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--------S------------- 351 (458)
Q Consensus 299 i~~Lv~lL~~------~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--------~------------- 351 (458)
+++++..+-+ +++.++..|+.++.+++..-... + .+.++.+++.+.+- .
T Consensus 533 l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~--L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~ 608 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ--V--VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSI 608 (980)
T ss_dssp HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT--C--SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHH
T ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH--h--hhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhc
Confidence 6776665544 46789999999999998754432 2 13444444443211 0
Q ss_pred ------c---HHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHh----hcCC---hh-HHhHHHHHHHHHhccCchh-
Q 012677 352 ------L---VDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIR----ESTC---ER-NKENCAAILYNICFTDRTR- 412 (458)
Q Consensus 352 ------~---~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~----~~~~---~~-~~~~a~~~L~~L~~~~~~~- 412 (458)
- .-.|++.|..... .++.+...++. .+++|+.-+. ...+ +. ...+.+.+|..++++.+..
T Consensus 609 ~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~-ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~ 687 (980)
T 3ibv_A 609 RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDS-LINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARG 687 (980)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCccc
Confidence 0 2234444444443 34555444433 3455544333 2111 11 1225677788888765321
Q ss_pred -----HHHHHHhhhhhHHHHHHhh--hCCHHHHHHHHHHHHHHHh
Q 012677 413 -----TREIMEEENANGTLSRLAE--NGTSRAKRKANGILERLNK 450 (458)
Q Consensus 413 -----~~~~~~~~g~~~~L~~ll~--~~~~~~~~~A~~~L~~l~~ 450 (458)
...+. ....+.+...+. ..+..+++.+..+++.+-.
T Consensus 688 ~~~~p~~~~f--~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~ 730 (980)
T 3ibv_A 688 SEEVAWLASF--NKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN 730 (980)
T ss_dssp -CCCSHHHHH--HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 11222 134555555555 3577899999998887653
No 202
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=85.11 E-value=6.4 Score=37.82 Aligned_cols=145 Identities=12% Similarity=0.159 Sum_probs=93.6
Q ss_pred cCchHHHHHHhhc----C-------ChHHHHHHHHHHHHhcccccchhHHHhh-CcHHHHHHHhccC--CcHHHHHHHHH
Q 012677 296 LGAMTPLIDLLEE----G-------HPLAMKDVASAIFSLCILLENKRRAVHA-GAVRVILRKIMEN--SLVDELLAILA 361 (458)
Q Consensus 296 ~g~i~~Lv~lL~~----~-------~~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~ 361 (458)
.+|+..|+.+|.. + +......++.+|..|.....+...++.. +++..|+..|.+. .++..++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4566667766642 1 3456788899999998888777776664 7899999888766 45667888888
Q ss_pred HhcCCH--HH-HHHHHhc----------CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch-----hHHHHHHhhhhh
Q 012677 362 MLSSHQ--DA-IEEIGEL----------GAIPCLLRIIRESTCERNKENCAAILYNICFTDRT-----RTREIMEEENAN 423 (458)
Q Consensus 362 ~La~~~--~~-~~~i~~~----------g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-----~~~~~~~~~g~~ 423 (458)
.+|..+ ++ ...++++ .-...||+.+.++.+.+.+..++..+=.|....++ ..+.-....|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 888743 24 4443222 23556788777555567777777666666665553 122333346777
Q ss_pred HHHHHHhhhCCHHHHHH
Q 012677 424 GTLSRLAENGTSRAKRK 440 (458)
Q Consensus 424 ~~L~~ll~~~~~~~~~~ 440 (458)
+.+-++-...++....+
T Consensus 206 ~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 206 QVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHTTCCCHHHHHH
T ss_pred HHHHHHhccCChhHHHH
Confidence 77766655566655443
No 203
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=84.20 E-value=0.58 Score=42.08 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=32.1
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHH
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVAS 319 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 319 (458)
|......- ....|..+++.++..+|..++..| . .+.|..+++++++.++..++.
T Consensus 67 R~~AA~~l-~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 67 RAIAVRYS-PVEALTPLIRDSDEVVRRAVAYRL---P--------------REQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp HHHHHTTS-CGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGGGGTTTCSCHHHHHHHHH
T ss_pred HHHHHHhC-CHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 44444432 334456667777888888877542 1 134555666667777766665
No 204
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=83.72 E-value=17 Score=34.11 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=83.9
Q ss_pred HHHhcccCch-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhc-CChHH
Q 012677 237 TILNLSIHDE-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEE-GHPLA 313 (458)
Q Consensus 237 ~L~~ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~ 313 (458)
-|.||-.|+. ...-+++.. ++..+.-++..++.++....+..|...|....-+ ... ...+|.++..+.. ++.++
T Consensus 265 DLL~LLmHdSnAIDGFVk~D-Gv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~--~t~L~e~LPFi~~~i~~h~eDdv 341 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSD-GVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA--KTPLENILPFLLRLIEIHPDDEV 341 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTT-HHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG--TSCCTTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHhcccccccceeecc-cceeEEEEeecCCcHHHHhhhheeeeecchHHHh--hccccccchHHHHHhccCCCcce
Confidence 3456666655 456778875 8888888999999999999999998886543222 222 5578888888864 58899
Q ss_pred HHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhc
Q 012677 314 MKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIM 348 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~ 348 (458)
.....+.|+|...+.. .+...+..|+++.|-..+.
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 9999999999988875 5666788899999998875
No 205
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=82.94 E-value=16 Score=40.03 Aligned_cols=216 Identities=12% Similarity=0.060 Sum_probs=130.6
Q ss_pred hhhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC--
Q 012677 168 SHLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-- 244 (458)
Q Consensus 168 ~~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-- 244 (458)
..+..++..+ +++.+.|.+|-..|..+-+. .++...+..+|..+ .++.++--|+..|.+....
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----------p~aw~~~~~iL~~s---~~~~vR~faa~~Lk~~I~~~W 81 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----------PDAWQKADQILQFS---TNPQSKFIALSILDKLITRKW 81 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----------TTGGGGHHHHHHHC---CCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----------ccHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHhhh
Confidence 4677788777 45555777788788766653 34455555555432 3678888898888876432
Q ss_pred ----chhhhhhhcCCCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHH
Q 012677 245 ----DENKRLVAENPLAIPLLIDSVRTG-----TIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAM 314 (458)
Q Consensus 245 ----~~~~~~i~~~~~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~ 314 (458)
++.+..+... ++..+...-..+ ..-++...+.+|..++..+-. .. .+.++-|+.+++.+ +...
T Consensus 82 ~~L~~e~~~~Ir~~--Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p----~~Wp~~l~dL~~~l~~~-~~~~ 154 (1023)
T 4hat_C 82 KLLPNDHRIGIRNF--VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSSSS-VNVC 154 (1023)
T ss_dssp GGSCHHHHHHHHHH--HHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHTTTC-HHHH
T ss_pred hcCCHHHHHHHHHH--HHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh----hhchHHHHHHHHHhcCC-HHHH
Confidence 2233333332 444444432221 244556677777777765411 12 56788888888653 4456
Q ss_pred HHHHHHHHHhccc------c---cchhH-----HHh--hCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHh
Q 012677 315 KDVASAIFSLCIL------L---ENKRR-----AVH--AGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGE 375 (458)
Q Consensus 315 ~~a~~aL~~L~~~------~---~~~~~-----i~~--~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~ 375 (458)
...+..|..|+.. . ..|.. +.. ..+++.+.++|.+. .+...++.+|......-. -..+.+
T Consensus 155 ~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i~~i~~ 233 (1023)
T 4hat_C 155 ENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-YRYIYE 233 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-THHHHS
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-HHHhcc
Confidence 6677777766443 1 11111 111 13444444555433 466778888888777322 334567
Q ss_pred cCCHHHHH-HHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 376 LGAIPCLL-RIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 376 ~g~i~~Lv-~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
.+.++.+. .++. ++..+..|+.+|..+...
T Consensus 234 ~~ll~~l~~~~L~---~~~~r~~A~ecL~eIv~~ 264 (1023)
T 4hat_C 234 TNILELLSTKFMT---SPDTRAITLKCLTEVSNL 264 (1023)
T ss_dssp SSHHHHHHTHHHH---SHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHcC---CHHHHHHHHHHHHHHHcc
Confidence 78888888 8876 378999999999999873
No 206
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=82.13 E-value=16 Score=35.87 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=76.1
Q ss_pred cCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHH
Q 012677 308 EGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRI 385 (458)
Q Consensus 308 ~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~l 385 (458)
.|+.+.+.-|+..|.....+-+... .-++..++.|..+. .++..|+..|-.+|.+ +.-..+ +..|+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~Ql 108 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQL 108 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHHH
Confidence 4567777777777777665444322 23667777888766 4677788888888887 444444 5677888
Q ss_pred HhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 386 IRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 386 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
|+.. +..-....-.+|..|...++. +.+..|..-+..+++.+++++...|.
T Consensus 109 Lqtd-d~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 109 LQTD-DSAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp TTCC-CHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred Hhcc-chHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 8843 355566666677777665542 23444555555567777777666553
No 207
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=81.57 E-value=0.21 Score=29.55 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=13.2
Q ss_pred CccccccccccccCCcc
Q 012677 78 YEFRCPISGEIMTDPVV 94 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~ 94 (458)
+.|.||+|+..+..|-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 45899999988887643
No 208
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=81.25 E-value=39 Score=36.72 Aligned_cols=291 Identities=9% Similarity=-0.013 Sum_probs=150.2
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc-C---CcHHHHHHHHHHHHHHhh-Cch----hh
Q 012677 132 NHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS-S---SLSDQKEAAKELRLLTKR-MPL----FR 202 (458)
Q Consensus 132 n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~-~---~~~~~~~a~~~L~~l~~~-~~~----~~ 202 (458)
+...++..++|+.+-... | ++.......|. + +...|.-|+..|.+..+. +++ .+
T Consensus 21 d~~~r~~A~~~L~~~q~s-p----------------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~ 83 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-S----------------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL 83 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-T----------------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH
T ss_pred CHHHHHHHHHHHHHHHcC-h----------------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 566677777777653211 1 12333444442 1 467777788777765542 222 33
Q ss_pred hhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCH-HHHHHHHHHHH
Q 012677 203 ALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTI-ETRRNAAAALF 281 (458)
Q Consensus 203 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~-~~~~~a~~~L~ 281 (458)
..+.+ ..+..+... .. .....-++.+...+|..+....-.. .=.+.++-|+.++++++. ........+|.
T Consensus 84 ~~lr~--~ll~~l~~~-~~--~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~ 154 (980)
T 3ibv_A 84 QMIRD--SVWSYIKEL-SF--LDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAASSQSEFSNFYLKVLL 154 (980)
T ss_dssp HHHHH--HHHHHHHHC-CS--TTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHh-cC--CCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 33333 333333331 10 1235577888888887777553100 112467778888876543 34444455555
Q ss_pred Hhhcc--C-c--------c-----hhHhhcc---CchHHHHHHhhc----CChHHHHHHHHHHHHhcccccchhHHHhhC
Q 012677 282 SLSAL--D-S--------N-----KLIIGKL---GAMTPLIDLLEE----GHPLAMKDVASAIFSLCILLENKRRAVHAG 338 (458)
Q Consensus 282 ~Ls~~--~-~--------~-----~~~i~~~---g~i~~Lv~lL~~----~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g 338 (458)
.|+.. + . . +..+.+. .+++....+|.. .++.++..++.+|......-+ ...++..+
T Consensus 155 ~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ 233 (980)
T 3ibv_A 155 SIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEP 233 (980)
T ss_dssp HHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHH
T ss_pred HhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcch
Confidence 44321 0 0 0 2222221 113333444433 677888888888887766433 34566778
Q ss_pred cHHHHHHHhccCCcHHHHHHHHHHhcC---CHHHHHHHHhcCCHHHHHHHHhh-cCChhHHhHHHHHHHHHhc------c
Q 012677 339 AVRVILRKIMENSLVDELLAILAMLSS---HQDAIEEIGELGAIPCLLRIIRE-STCERNKENCAAILYNICF------T 408 (458)
Q Consensus 339 ~v~~Lv~ll~~~~~~~~a~~~L~~La~---~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~a~~~L~~L~~------~ 408 (458)
.++.+.++|.+++++..|+.+|..+.. .++.+..++..=.+...+..+.. ..+.+..+.-++.+..++. .
T Consensus 234 ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~ 313 (980)
T 3ibv_A 234 CMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKS 313 (980)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999988888999998888865 56666666543111111211111 2234444333333322211 1
Q ss_pred Cc-----hhHHHHH-HhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 409 DR-----TRTREIM-EEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 409 ~~-----~~~~~~~-~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
.+ +...+.. .-.+.++.+...+.+.++.+...+...+..+.
T Consensus 314 ~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 314 DPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp SCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred CccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 11 0000011 11256677777777777766665555544443
No 209
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=80.21 E-value=28 Score=32.69 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHH
Q 012677 185 KEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDS 264 (458)
Q Consensus 185 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~l 264 (458)
..+...|..|.. ......-++. .++|..+...+... +.++.....+.|...+....-...-.+ ..+|.++..
T Consensus 261 tR~FDLL~LLmH-dSnAIDGFVk-~DGv~~I~TvinYp----N~~l~RaG~KLLLQVSDaksL~~t~L~--e~LPFi~~~ 332 (619)
T 3c2g_A 261 IRTFDLLGLLLH-DSDAIDGFVR-SDGVGAITTVVQYP----NNDLIRAGCKLLLQVSDAKALAKTPLE--NILPFLLRL 332 (619)
T ss_dssp HHHHHHHHHHCC-SHHHHHHHHH-TTHHHHHHHHTTSS----CHHHHHHHHHHHHHHTTCGGGGTSCCT--THHHHHHHH
T ss_pred HHHHHHHHHHhc-ccccccceee-cccceeEEEEeecC----CcHHHHhhhheeeeecchHHHhhcccc--ccchHHHHH
Confidence 345555555554 3344555677 78899999998875 889999999999888754433222222 378888887
Q ss_pred Hh-cCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhh
Q 012677 265 VR-TGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLE 307 (458)
Q Consensus 265 L~-~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~ 307 (458)
+. +++.++.-...+.|.|...+... ++..+..|+|+.|-+...
T Consensus 333 i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 333 IEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred hccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 76 46889999999999999887754 555667899999988764
No 210
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=79.47 E-value=83 Score=35.02 Aligned_cols=252 Identities=8% Similarity=-0.004 Sum_probs=132.5
Q ss_pred CCcHHHHHHHHHHHHHHhh-----CchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhc
Q 012677 179 SSLSDQKEAAKELRLLTKR-----MPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAE 253 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~ 253 (458)
.+..+|.-|+..|.+..+. +++.+..|.+ ..+..+...-.. .......++.+...++..+++.+--..
T Consensus 59 ~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~--~ll~~l~~~~~~-~~~~~~~vr~kla~~la~Ia~~d~p~~---- 131 (1204)
T 3a6p_A 59 QVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN--SVMELIANGTLN-ILEEENHIKDALSRIVVEMIKREWPQH---- 131 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH--HHHHHHHHSSCC-TTSSCHHHHHHHHHHHHHHHHHHSTTT----
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--HHHHHHHhhccc-cccccHHHHHHHHHHHHHHHHHhCccc----
Confidence 3567788888888876643 2333444433 333433332111 001256777788888887776531111
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc---Cc----chh-----Hhhc--cCchHHHHHHhhc-----------
Q 012677 254 NPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL---DS----NKL-----IIGK--LGAMTPLIDLLEE----------- 308 (458)
Q Consensus 254 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~---~~----~~~-----~i~~--~g~i~~Lv~lL~~----------- 308 (458)
=.+.++.|+.++++ +...++.+..+|..|+.. .+ .+. .+.+ ..+++.+..++..
T Consensus 132 Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 132 WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 13477888888876 556678888888888643 11 111 1221 1233334444432
Q ss_pred --------CChHHHHHHHHHHHHhcccccchhHHHhh--CcHHHHHHHhccCCcHHHHHHHHHHhcC---CHHHHHHHHh
Q 012677 309 --------GHPLAMKDVASAIFSLCILLENKRRAVHA--GAVRVILRKIMENSLVDELLAILAMLSS---HQDAIEEIGE 375 (458)
Q Consensus 309 --------~~~~~~~~a~~aL~~L~~~~~~~~~i~~~--g~v~~Lv~ll~~~~~~~~a~~~L~~La~---~~~~~~~i~~ 375 (458)
++..+...++.++.+....-+. ..+.+. ..++.+..++.+++++..|+.+|..+.. .++.+..++.
T Consensus 211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~ 289 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMV 289 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGG
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHH
Confidence 1234556666666655443221 223343 3788888888888899999999999987 2455544433
Q ss_pred c---CCHHHHHHHHhh-------cCChhHHhHHHHHHHHHhccCchhHHHHHH----------hhhhhHHHHHHhhhCCH
Q 012677 376 L---GAIPCLLRIIRE-------STCERNKENCAAILYNICFTDRTRTREIME----------EENANGTLSRLAENGTS 435 (458)
Q Consensus 376 ~---g~i~~Lv~ll~~-------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~----------~~g~~~~L~~ll~~~~~ 435 (458)
. ..+..++..+.. ..+.+..+.-+.++..++.. ...++. -.+.++.+..+..+.+.
T Consensus 290 ~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~----l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~ 365 (1204)
T 3a6p_A 290 LFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ----LCALLGADSDVETPSNFGKYLESFLAFTTHPSQ 365 (1204)
T ss_dssp GGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH----HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCH
T ss_pred HHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH----HHHHHhccccccChhHHHHHHHHHHHHHhCccH
Confidence 1 113344444321 11134444555555555421 111111 02456666666666555
Q ss_pred HHHHHHHH
Q 012677 436 RAKRKANG 443 (458)
Q Consensus 436 ~~~~~A~~ 443 (458)
.+...+..
T Consensus 366 ~vs~~~l~ 373 (1204)
T 3a6p_A 366 FLRSSTQM 373 (1204)
T ss_dssp HHHHHHHH
T ss_pred HhHHHHHH
Confidence 55555443
No 211
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=79.43 E-value=0.077 Score=39.33 Aligned_cols=41 Identities=24% Similarity=0.462 Sum_probs=28.3
Q ss_pred cccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 80 FRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..||.|...|.. .-|+.+|..|-..+.. ...||.|++++..
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~--~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEM--KALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEE--EEECTTTCSBCEE
T ss_pred ccCccCCCccee----cCCEEECccccchhhc--cccCcchhhHHHH
Confidence 689999988763 2345558888554433 2369999998753
No 212
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=78.13 E-value=14 Score=32.69 Aligned_cols=128 Identities=10% Similarity=0.040 Sum_probs=84.8
Q ss_pred HhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhc-cC--CcHHHHHHHHHHhcC--CHHHHHHHHhcCCH
Q 012677 305 LLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIM-EN--SLVDELLAILAMLSS--HQDAIEEIGELGAI 379 (458)
Q Consensus 305 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~-~~--~~~~~a~~~L~~La~--~~~~~~~i~~~g~i 379 (458)
+.+++..++|..|+.+|..+ . . ....++.+...+. ++ .+++.+..++..++. +++ ..+
T Consensus 79 L~~~~~deVR~~Av~lLg~~-~--~------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l 141 (240)
T 3l9t_A 79 AYQSDVYQVRMYAVFLFGYL-S--K------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KAL 141 (240)
T ss_dssp HHTCSSHHHHHHHHHHHHHT-T--T------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTH
T ss_pred HHhCcchHHHHHHHHHHHhc-c--C------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHH
Confidence 44556778999999988877 2 1 1235555555333 44 578888888887764 332 157
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 380 PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 380 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+.+...+.+. +..++..|...+.--+.....+ .- -.-.++.|..+..+.+.-+++..++.|+.+++..+.
T Consensus 142 ~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k--~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 142 PIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFK--EN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp HHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTT--TC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCC-CHHHHHHHHHhhHHHhccchhh--cC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 7788888864 5999998888775433321111 00 122456666777778888999999999999988765
No 213
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=77.98 E-value=28 Score=38.25 Aligned_cols=216 Identities=11% Similarity=0.043 Sum_probs=129.5
Q ss_pred hhhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC--
Q 012677 168 SHLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-- 244 (458)
Q Consensus 168 ~~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-- 244 (458)
..+..++..+ +++.+.|.+|-..|..+-+. .++...+..+|..+ .++.++--|+..|.+....
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-----------p~aw~~~~~iL~~s---~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-----------PDAWTRVDTILEFS---QNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-----------SCHHHHHTCC---C---CSHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-----------chHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHhhh
Confidence 4678888877 45566677777777554432 56666667777653 4788898899998876542
Q ss_pred ----chhhhhhhcCCCCHHHHHHHHhc-----CCHHHHHHHHHHHHHhhccC--cchhHhhccCchHHHHHHhhcCChHH
Q 012677 245 ----DENKRLVAENPLAIPLLIDSVRT-----GTIETRRNAAAALFSLSALD--SNKLIIGKLGAMTPLIDLLEEGHPLA 313 (458)
Q Consensus 245 ----~~~~~~i~~~~~~i~~Lv~lL~~-----~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~ 313 (458)
++.+..+... ++..+...-.. .+..++...+.++..++..+ +.. .+.++-|+.++.. ++..
T Consensus 94 ~~L~~e~~~~LR~~--Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~-~~~~ 165 (1073)
T 3gjx_A 94 KILPRNQCEGIKKY--VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRT-SESL 165 (1073)
T ss_dssp GGSCHHHHHHHHHH--HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHH-CHHH
T ss_pred hhCCHHHHHHHHHH--HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCC-CHHH
Confidence 2233333331 44444443222 24566777777888877643 111 4578888887754 3456
Q ss_pred HHHHHHHHHHhcccc-c--------chh-----HHHhh--CcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHH
Q 012677 314 MKDVASAIFSLCILL-E--------NKR-----RAVHA--GAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIG 374 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~-~--------~~~-----~i~~~--g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~ 374 (458)
....+..|..|+..- + .|. .+.+. .+++.+..+|... .+...++.+|......-+ -..++
T Consensus 166 ~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~ 244 (1073)
T 3gjx_A 166 CQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIF 244 (1073)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhc
Confidence 667778887776541 1 111 12221 2333333344333 456778888888888432 23566
Q ss_pred hcCCHHHHH-HHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 375 ELGAIPCLL-RIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 375 ~~g~i~~Lv-~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
+.+.++.|+ .+|. ++..+..|+.+|..|....
T Consensus 245 ~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 245 ETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp SSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHSC
T ss_pred cchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhcc
Confidence 777777774 5553 4789999999999998753
No 214
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=77.31 E-value=45 Score=36.47 Aligned_cols=167 Identities=8% Similarity=0.028 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccC------cchhHhhccCchH
Q 012677 228 PGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALD------SNKLIIGKLGAMT 300 (458)
Q Consensus 228 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~------~~~~~i~~~g~i~ 300 (458)
...+..|-..|..+-.+ .++...+..+|.+ .+..+|..|+.+|.+..... +.+..|.+ ..+.
T Consensus 30 ~~~r~~Ae~~L~~~~~~----------p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~-~ll~ 98 (1049)
T 3m1i_C 30 GVQQKQAQEILTKFQDN----------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN-FVVG 98 (1049)
T ss_dssp HHHHHHHHHHHHHHHHS----------TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHHHhC----------chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH-HHHH
Confidence 34555555555544322 3355556666654 47899999999999876532 22222222 2233
Q ss_pred HHHHHhhcC-----ChHHHHHHHHHHHHhcccc--cchhHHHhhCcHHHHHHHhccC-CcHHHHHHHHHHhcCC-H----
Q 012677 301 PLIDLLEEG-----HPLAMKDVASAIFSLCILL--ENKRRAVHAGAVRVILRKIMEN-SLVDELLAILAMLSSH-Q---- 367 (458)
Q Consensus 301 ~Lv~lL~~~-----~~~~~~~a~~aL~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~La~~-~---- 367 (458)
.+...-..+ +..++...+.++..++..+ +.. .+.++.|++++..+ ...+.++.+|..|+.. .
T Consensus 99 ~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~~~~~ 173 (1049)
T 3m1i_C 99 MIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSA 173 (1049)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhcc
Confidence 333222111 3567777888888887653 222 25788888888644 3456677777777631 0
Q ss_pred ----HHH-----HHHHhc--CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc
Q 012677 368 ----DAI-----EEIGEL--GAIPCLLRIIRESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 368 ----~~~-----~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
..| ..+... ..+..+..++....+..++..++.++.+....-+
T Consensus 174 ~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~ 227 (1049)
T 3m1i_C 174 EQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP 227 (1049)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC
Confidence 111 223221 1233344555554457788999999988766544
No 215
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=77.17 E-value=3.6 Score=29.68 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=25.3
Q ss_pred CCCCccccccccccccCCccC---CCcccccHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVL---ANGQTFDRPCIQRW 109 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l---~cgh~fc~~ci~~~ 109 (458)
.++.+-.|+||...-.+ ..+ -|+-.||..|+.+-
T Consensus 11 ~~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCcccccccc-ceeccccccccccHhhcccc
Confidence 45677789999865443 333 38999999999985
No 216
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=75.33 E-value=9.6 Score=30.70 Aligned_cols=71 Identities=7% Similarity=0.062 Sum_probs=55.2
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
+..|.+-|.+. ++.++..|+.+|..+..+.+......+....++.-|++++...++.++++...++.....
T Consensus 44 ~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 56677777754 599999999999998887765555555556678888888877788999999999887654
No 217
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=73.11 E-value=34 Score=37.60 Aligned_cols=126 Identities=10% Similarity=0.038 Sum_probs=78.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc-----C--ChHHHHHHHHHHHHhcccccchh
Q 012677 260 LLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE-----G--HPLAMKDVASAIFSLCILLENKR 332 (458)
Q Consensus 260 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~--~~~~~~~a~~aL~~L~~~~~~~~ 332 (458)
.|...+..++.+-+..++.+|.|+-.. ..++.|..++.. . ...++..|++||..++.....
T Consensus 444 ~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-- 511 (1056)
T 1lsh_A 444 LLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-- 511 (1056)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH--
T ss_pred HHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH--
Confidence 344455667777788888888888542 357777777642 1 346778899999998743221
Q ss_pred HHHhhCcHHHHHHHhccC----CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 333 RAVHAGAVRVILRKIMEN----SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 333 ~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
-+-+.|+++..+. +++..|+.+|. -.+|. ...+..++..+....+..+.......|.+|+..
T Consensus 512 -----~v~~il~~i~~n~~e~~EvRiaA~~~Lm--~t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 512 -----KVQEIVLPIFLNVAIKSELRIRSCIVFF--ESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp -----HHHHHHHHHHHCTTSCHHHHHHHHHHHH--HTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHhcCCCCChHHHHHHHHHHH--HHCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 1334466666543 34444544443 22221 122556677777656788888888899998876
Q ss_pred Cch
Q 012677 409 DRT 411 (458)
Q Consensus 409 ~~~ 411 (458)
...
T Consensus 578 ~~P 580 (1056)
T 1lsh_A 578 SNP 580 (1056)
T ss_dssp CSG
T ss_pred CCc
Confidence 643
No 218
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=73.10 E-value=3.7 Score=28.41 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=31.7
Q ss_pred CCccccccccccccCCccC--CCcccccHHHHHHHHhc---CCCCCCCCCccC
Q 012677 77 PYEFRCPISGEIMTDPVVL--ANGQTFDRPCIQRWLDE---GNRTCPQTRQVL 124 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l--~cgh~fc~~ci~~~~~~---~~~~CP~c~~~l 124 (458)
.....|.+|.+- +-+++ .|...||..|+...+.. +.-.||.|....
T Consensus 10 ~~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345569999863 22333 48999999999877653 234899997543
No 219
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.58 E-value=11 Score=32.95 Aligned_cols=33 Identities=18% Similarity=0.078 Sum_probs=22.3
Q ss_pred CCCCccccccccccccCCcc----CCCcccccHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVV----LANGQTFDRPCIQ 107 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~----l~cgh~fc~~ci~ 107 (458)
.+.+...|++|...|.--.. -.||+.||..|..
T Consensus 157 ~W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 157 NWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred cCCCCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 34456789999987752111 2599999988854
No 220
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=72.18 E-value=0.94 Score=32.18 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=32.7
Q ss_pred cccccccccccCCc----cCCCcc----cccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 80 FRCPISGEIMTDPV----VLANGQ----TFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 80 ~~C~ic~~~~~~p~----~l~cgh----~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
..||||+..+...- .++=+. .-++.-...-+..-.+.||.|+..+--..+..+
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~ 69 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRR 69 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChH
Confidence 46999998775321 122111 124555566666666789999998876655443
No 221
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=70.81 E-value=1.1 Score=25.16 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=11.5
Q ss_pred CccccccccccccCCcc
Q 012677 78 YEFRCPISGEIMTDPVV 94 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~ 94 (458)
..+.||+|...|.|+-+
T Consensus 2 ~k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CCEECTTSSCEESSHHH
T ss_pred CcccCccccccCcChHH
Confidence 35678888877777643
No 222
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=69.83 E-value=17 Score=30.12 Aligned_cols=71 Identities=4% Similarity=0.040 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh-CCHHHHHHHHHHHHHHHh
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN-GTSRAKRKANGILERLNK 450 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 450 (458)
+..|.+-|.+. ++.++..|+.+|..+..+........+....+++-|++++.. .++.+++++..+|..-..
T Consensus 54 ~ral~krl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 54 LKAIMKRVNHK-VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 56677777754 599999999999999987665555555556788888888865 567899999998876654
No 223
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=69.13 E-value=1.9 Score=32.02 Aligned_cols=13 Identities=38% Similarity=0.994 Sum_probs=11.5
Q ss_pred cccHHHHHHHHhc
Q 012677 100 TFDRPCIQRWLDE 112 (458)
Q Consensus 100 ~fc~~ci~~~~~~ 112 (458)
.|||.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 224
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=68.93 E-value=1.9 Score=31.93 Aligned_cols=13 Identities=46% Similarity=1.106 Sum_probs=11.5
Q ss_pred cccHHHHHHHHhc
Q 012677 100 TFDRPCIQRWLDE 112 (458)
Q Consensus 100 ~fc~~ci~~~~~~ 112 (458)
.|||.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 225
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=68.84 E-value=71 Score=29.29 Aligned_cols=147 Identities=9% Similarity=0.085 Sum_probs=100.6
Q ss_pred chHHHHHHhhcC------ChHHHHHHHHHHHHhcccccchhHHHhh--CcHHHHHHHhccC-CcHHHHHHHHHHhcC-CH
Q 012677 298 AMTPLIDLLEEG------HPLAMKDVASAIFSLCILLENKRRAVHA--GAVRVILRKIMEN-SLVDELLAILAMLSS-HQ 367 (458)
Q Consensus 298 ~i~~Lv~lL~~~------~~~~~~~a~~aL~~L~~~~~~~~~i~~~--g~v~~Lv~ll~~~-~~~~~a~~~L~~La~-~~ 367 (458)
.+..+..+++++ +......|+..|-.++.+-..-.+|++. ..+..|+-....+ .+++.|.++|..--. +|
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 355566777776 4456778888888888887777777763 4444444222223 578889999988877 78
Q ss_pred HHHHHHHhc--CCHHHHHHHHhh------cCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC--CHHH
Q 012677 368 DAIEEIGEL--GAIPCLLRIIRE------STCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG--TSRA 437 (458)
Q Consensus 368 ~~~~~i~~~--g~i~~Lv~ll~~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~ 437 (458)
.....+.+. ..+..+..-|.. ..+..++..-+++|..|...+.. .. ..++..|.++.... .+.+
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~-F~-----~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED-LP-----IYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT-C-------CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh-hh-----hccHHHHHHHHccCCCCHHH
Confidence 888877663 334444444432 12357778888999999887632 11 33568888888777 8899
Q ss_pred HHHHHHHHHHHHh
Q 012677 438 KRKANGILERLNK 450 (458)
Q Consensus 438 ~~~A~~~L~~l~~ 450 (458)
|.++..++..+-.
T Consensus 177 k~Kvl~li~d~f~ 189 (315)
T 3qml_C 177 QIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999999988775
No 226
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=68.30 E-value=1.5 Score=46.88 Aligned_cols=62 Identities=15% Similarity=0.069 Sum_probs=52.4
Q ss_pred CCCCCCCCccCCCCCCccc--HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIPN--HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n--~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||.....+.++.+.|. ++ -|..|++|... +.++|-|.+++....++||. +++..|+.|.
T Consensus 891 ~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~--~Lk~~I~~w~ 955 (968)
T 3m62_A 891 EFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNE--ELRQKILCFK 955 (968)
T ss_dssp GGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECH--HHHHHHHHHH
T ss_pred HhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccH--HHHHHHHHHH
Confidence 4579999999998877775 23 49999999987 55899999999988899886 8999999995
No 227
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=66.15 E-value=67 Score=35.23 Aligned_cols=122 Identities=13% Similarity=0.049 Sum_probs=77.4
Q ss_pred CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCC---CCCCChhHHHHHHHHHHhcccCchhhhhhhcCC
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPG---RADTDPGLLEDLITTILNLSIHDENKRLVAENP 255 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~ 255 (458)
.+.+.+..++++|+++-. ...++.|..++... ..+....++..|+.+|..++...+. .
T Consensus 452 ~~~~~~~~~LkaLGN~g~------------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~--~----- 512 (1056)
T 1lsh_A 452 AKEEEIVLALKALGNAGQ------------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR--K----- 512 (1056)
T ss_dssp TCHHHHHHHHHHHHHHTC------------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH--H-----
T ss_pred CChHHHHHHHHHhhccCC------------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH--H-----
Confidence 455667778888888765 24567777776421 1122456788899999988854321 1
Q ss_pred CCHHHHHHHHh--cCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhccccc
Q 012677 256 LAIPLLIDSVR--TGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLE 329 (458)
Q Consensus 256 ~~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~ 329 (458)
+-+.+..++. ..+.++|..|+..|..- ++ . ...+..|+..+.. .+.++.......|.+++....
T Consensus 513 -v~~il~~i~~n~~e~~EvRiaA~~~Lm~t--~P-~------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 513 -VQEIVLPIFLNVAIKSELRIRSCIVFFES--KP-S------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp -HHHHHHHHHHCTTSCHHHHHHHHHHHHHT--CC-C------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred -HHHHHHHHhcCCCCChHHHHHHHHHHHHH--Cc-C------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 3345667774 45789999888877532 11 1 1234555565555 477788888888888887664
No 228
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=66.08 E-value=70 Score=28.17 Aligned_cols=144 Identities=11% Similarity=0.027 Sum_probs=88.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHH-HhhcCChHHHHHHHHHHHHhcc-cccchhHH
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLID-LLEEGHPLAMKDVASAIFSLCI-LLENKRRA 334 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~i 334 (458)
.++....+.+++..++|..|+.+|..+ . -....++.+.. +-.+.+-.+++.++.++..++. ....+
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 445445566677789999999988777 2 11234566665 3344577999999999998875 33222
Q ss_pred HhhCcHHHHHHHhccCC--cHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchh
Q 012677 335 VHAGAVRVILRKIMENS--LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTR 412 (458)
Q Consensus 335 ~~~g~v~~Lv~ll~~~~--~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 412 (458)
.++.+.....+++ ++..|...+.--+..+.- ..+..-+-.+++-+..+.+.-++....+.|..++..+++-
T Consensus 140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 5667777777773 555555444321211100 0000112223333333556999999999999999999887
Q ss_pred HHHHHHh
Q 012677 413 TREIMEE 419 (458)
Q Consensus 413 ~~~~~~~ 419 (458)
++.++..
T Consensus 213 V~~~~~~ 219 (240)
T 3l9t_A 213 VKIELKN 219 (240)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7666654
No 229
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=65.01 E-value=1.7e+02 Score=32.15 Aligned_cols=212 Identities=11% Similarity=0.040 Sum_probs=119.9
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccC---
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALD--- 287 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~--- 287 (458)
+..++..+.++ +.+.+..|-..|..+-.+++ +...+..+|.. .+..+|-.|+.+|.+.....
T Consensus 30 Le~lv~~ly~p----~~~~r~qA~~~L~q~q~sp~----------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 30 LDNVVNCLYHG----EGAQQRMAQEVLTHLKEHPD----------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp HHHHHHTTTCS----SHHHHHHHHHHHHTSSCCSC----------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhCC----CHHHHHHHHHHHHHHHcCch----------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 44455555543 55667777777766554433 33333344433 47899999999998876532
Q ss_pred ---cchhHhhccCchHHHHHHhhc-----CChHHHHHHHHHHHHhcccc--cchhHHHhhCcHHHHHHHhccC-CcHHHH
Q 012677 288 ---SNKLIIGKLGAMTPLIDLLEE-----GHPLAMKDVASAIFSLCILL--ENKRRAVHAGAVRVILRKIMEN-SLVDEL 356 (458)
Q Consensus 288 ---~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a 356 (458)
+.+..+. ...+..+...-.+ .++.++...+.++..++... +.. .+.++-|++++..+ ...+..
T Consensus 96 L~~e~~~~LR-~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~~~~~~~~~ 169 (1073)
T 3gjx_A 96 LPRNQCEGIK-KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRTSESLCQNN 169 (1073)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHCHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCCCHHHHHHH
Confidence 2222222 2234444443222 23556666777777776532 222 24566677766544 345556
Q ss_pred HHHHHHhcCC-----H---------HHHHHHHhcCCHHHHH----HHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHH
Q 012677 357 LAILAMLSSH-----Q---------DAIEEIGELGAIPCLL----RIIRESTCERNKENCAAILYNICFTDRTRTREIME 418 (458)
Q Consensus 357 ~~~L~~La~~-----~---------~~~~~i~~~g~i~~Lv----~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 418 (458)
+.+|..|+.. . ..++.+.+. ++.++ .+|....++.+...++.+|......-+-. .++
T Consensus 170 L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~--~i~- 244 (1073)
T 3gjx_A 170 MVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLG--YIF- 244 (1073)
T ss_dssp HHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH--HHH-
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHH--Hhc-
Confidence 6777666541 0 112233332 34444 44544556788888999999998886532 333
Q ss_pred hhhhhHHHH-HHhhhCCHHHHHHHHHHHHHHHh
Q 012677 419 EENANGTLS-RLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 419 ~~g~~~~L~-~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
+...++.|. .++ .++..+..|+..|..+..
T Consensus 245 ~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 245 ETKLISTLIYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp SSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 355666553 333 467788888888877654
No 230
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=64.57 E-value=3.2 Score=42.78 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=39.1
Q ss_pred CCCccccccccccccCCc--------c--CCCcccc--------------------cHHHHHHHHhc-------CCCCCC
Q 012677 76 LPYEFRCPISGEIMTDPV--------V--LANGQTF--------------------DRPCIQRWLDE-------GNRTCP 118 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~--------~--l~cgh~f--------------------c~~ci~~~~~~-------~~~~CP 118 (458)
.||-.+|+-|...|.||- + +.||..| |..|-.+|-.. +...||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 578889999999998874 2 3588877 99999998763 234899
Q ss_pred CCCccC
Q 012677 119 QTRQVL 124 (458)
Q Consensus 119 ~c~~~l 124 (458)
.|+-.+
T Consensus 94 ~CGP~l 99 (657)
T 3ttc_A 94 ECGPYL 99 (657)
T ss_dssp TTSCCE
T ss_pred ccCccc
Confidence 999877
No 231
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=64.29 E-value=83 Score=35.05 Aligned_cols=212 Identities=11% Similarity=0.021 Sum_probs=117.1
Q ss_pred hhhhHHhh-cC--CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC--
Q 012677 170 LNSLLEKM-SS--SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-- 244 (458)
Q Consensus 170 l~~Lv~~l-~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-- 244 (458)
+..+++.+ ++ +...|.+|-..|..+-... .+...+...|... +.+..++--|+..|.+....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~--s~~~~vR~~A~~~Lk~~I~~~W 79 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEK--TQVAIVRHFGLQILEHVVKFRW 79 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTST--TSCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHhc
Confidence 44444443 33 4456888888887765532 2333333333211 23678888888888876432
Q ss_pred ----chhhhhhhcCCCCHHHHHHHHhc-------CCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChH
Q 012677 245 ----DENKRLVAENPLAIPLLIDSVRT-------GTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPL 312 (458)
Q Consensus 245 ----~~~~~~i~~~~~~i~~Lv~lL~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~ 312 (458)
++.+..+.. .|+..+.+ .+..++...+.++..++..+-. .+ .+.++.|+.++++ ++.
T Consensus 80 ~~l~~e~k~~Ir~------~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~ 148 (1204)
T 3a6p_A 80 NGMSRLEKVYLKN------SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GET 148 (1204)
T ss_dssp GGSCHHHHHHHHH------HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHH
T ss_pred ccCCHHHHHHHHH------HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHH
Confidence 223333322 24444332 3577888888899888875411 12 5678899998866 556
Q ss_pred HHHHHHHHHHHhccc---cc----chhH-----HHhh--CcHHHHHHHhccC---------------------CcHHHHH
Q 012677 313 AMKDVASAIFSLCIL---LE----NKRR-----AVHA--GAVRVILRKIMEN---------------------SLVDELL 357 (458)
Q Consensus 313 ~~~~a~~aL~~L~~~---~~----~~~~-----i~~~--g~v~~Lv~ll~~~---------------------~~~~~a~ 357 (458)
....++.+|..|+.. .+ .+.. +.+. .+++.+.+++.+. .+...++
T Consensus 149 ~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL 228 (1204)
T 3a6p_A 149 QTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAAL 228 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHH
Confidence 677888888888653 11 1111 1111 2333344444321 1334455
Q ss_pred HHHHHhcCCHHHHHHHHhcC--CHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 358 AILAMLSSHQDAIEEIGELG--AIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 358 ~~L~~La~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
.++.+....-.. ..+.+.. .++.+..++. ++.++..|+.+|..+....
T Consensus 229 ~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 229 NTLAGYIDWVSM-SHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhccCH-HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCC
Confidence 555444332111 2222322 4555554443 3789999999999999855
No 232
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=64.24 E-value=24 Score=28.69 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=55.4
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh------CCHHHHHHHHHHHHHHHh
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN------GTSRAKRKANGILERLNK 450 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 450 (458)
++..|.+-|.+ .++.++..|+.+|..+..+.+......+....++.-|++++.. .++.++++...++..-..
T Consensus 49 a~ral~krl~~-~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQS-PQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 35677777875 4699999999999999887766655555556788888888852 467899999999887654
No 233
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=64.20 E-value=3.2 Score=43.82 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCCccccccccccccCCc--------c--CCCcccc--------------------cHHHHHHHHhc-------CCCCCC
Q 012677 76 LPYEFRCPISGEIMTDPV--------V--LANGQTF--------------------DRPCIQRWLDE-------GNRTCP 118 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~--------~--l~cgh~f--------------------c~~ci~~~~~~-------~~~~CP 118 (458)
.||-.+|+-|...|.||- + +.||..| |..|-.+|-.. +...||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 578889999999999874 2 3588877 99999999763 234899
Q ss_pred CCCccCC
Q 012677 119 QTRQVLS 125 (458)
Q Consensus 119 ~c~~~l~ 125 (458)
.|+-.+.
T Consensus 183 ~CGP~l~ 189 (772)
T 4g9i_A 183 VCGPSYR 189 (772)
T ss_dssp TTSCCEE
T ss_pred cCCceEE
Confidence 9997764
No 234
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=63.30 E-value=20 Score=29.12 Aligned_cols=71 Identities=13% Similarity=-0.008 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh------CCHHHHHHHHHHHHHHHh
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN------GTSRAKRKANGILERLNK 450 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 450 (458)
+..|.+-|++ .++.++..|+.+|..+..+.+......+....++.-|++++.. ....+++++..++..-+.
T Consensus 40 ~rai~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 40 PWLLAHKIQS-PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677777775 4699999999999999987665555556566788888888753 367899999988877653
No 235
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=63.27 E-value=7.7 Score=37.51 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=65.9
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHh--------cCCHHHHHHHHHHHHHhhccCcc-hhHhhccC
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVR--------TGTIETRRNAAAALFSLSALDSN-KLIIGKLG 297 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~--------~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g 297 (458)
.+..+-.++++|.|+-.+......++........++..+. ..+..++..++.++.|++..... +. +..
T Consensus 275 ~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~e 351 (425)
T 3pst_A 275 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLE 351 (425)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTT
T ss_pred ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHH
Confidence 6788889999999998888755555543223455555542 12457889999999999874311 11 122
Q ss_pred chHHHHHHhh---------cCChHHHHHHHHHHHHhccccc
Q 012677 298 AMTPLIDLLE---------EGHPLAMKDVASAIFSLCILLE 329 (458)
Q Consensus 298 ~i~~Lv~lL~---------~~~~~~~~~a~~aL~~L~~~~~ 329 (458)
.+..++.++. ..+.++...++.||.+|....+
T Consensus 352 l~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 352 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 3445666555 2478888999999999986443
No 236
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=63.23 E-value=4.5 Score=31.70 Aligned_cols=51 Identities=12% Similarity=0.080 Sum_probs=38.3
Q ss_pred CccccccccccccC---CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 78 YEFRCPISGEIMTD---PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 78 ~~~~C~ic~~~~~~---p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
+=|.|..|...+.+ .....=|..||..|..+.+.. ...|-.|+.++....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 34889999998863 344567889999999988753 2269999999876543
No 237
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=63.11 E-value=3.4 Score=43.46 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=39.2
Q ss_pred CCCCccccccccccccCCc--------c--CCCcccc--------------------cHHHHHHHHhc-------CCCCC
Q 012677 75 GLPYEFRCPISGEIMTDPV--------V--LANGQTF--------------------DRPCIQRWLDE-------GNRTC 117 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~--------~--l~cgh~f--------------------c~~ci~~~~~~-------~~~~C 117 (458)
-.||-.+|+-|...|.||- + +.||..| |..|-.+|-.. +...|
T Consensus 107 i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC 186 (761)
T 3vth_A 107 VSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVAC 186 (761)
T ss_dssp CCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCC
T ss_pred cCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcC
Confidence 3578889999999998874 2 3588665 99999998653 23479
Q ss_pred CCCCccCC
Q 012677 118 PQTRQVLS 125 (458)
Q Consensus 118 P~c~~~l~ 125 (458)
|.|+-.+.
T Consensus 187 ~~CGP~l~ 194 (761)
T 3vth_A 187 FDCGPSLS 194 (761)
T ss_dssp TTTSCCEE
T ss_pred CccCCeeE
Confidence 99997764
No 238
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=62.90 E-value=0.45 Score=34.34 Aligned_cols=41 Identities=20% Similarity=0.472 Sum_probs=25.1
Q ss_pred cccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 80 FRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..||.|...|..- -++.+|..|=..+-.. . .||.|++++..
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~-a-fCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQ-A-LCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEE-E-ECSSSCSCCCE
T ss_pred CCCCCCCCccccC----CCceECccccccCCCc-c-cCcchhhHHHH
Confidence 5699999877531 2244566664433222 2 69999988854
No 239
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=62.16 E-value=22 Score=29.65 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh------CCHHHHHHHHHHHHHHHh
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN------GTSRAKRKANGILERLNK 450 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 450 (458)
+..|.+-|.+. ++.++..|+.+|..+..+........+....++.-|++++.. ....+++++..+|..-..
T Consensus 52 ~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 56677778754 599999999999999987665555556566788888888752 357899999999887653
No 240
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=61.80 E-value=4 Score=36.70 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=64.3
Q ss_pred ChhHHHHHHHHHHhcccCch-hhhhhhcCCCCHHHHHHHHh--------cCCHHHHHHHHHHHHHhhccCcc-hhHhhcc
Q 012677 227 DPGLLEDLITTILNLSIHDE-NKRLVAENPLAIPLLIDSVR--------TGTIETRRNAAAALFSLSALDSN-KLIIGKL 296 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~~i~~Lv~lL~--------~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~ 296 (458)
++..+-.+++++.|+-.++. .+..+... .....++..+. ..+..++..++.++.|++..... +. +.
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~-~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~ 178 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVKLLESN-QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DL 178 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSH-HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CT
T ss_pred chhHHHHHHHHHHHcccCCchHHHHHhcc-hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hH
Confidence 67888899999999998888 45555443 23333444331 12567889999999999864211 11 12
Q ss_pred CchHHHHHHhhc---------CChHHHHHHHHHHHHhccccc
Q 012677 297 GAMTPLIDLLEE---------GHPLAMKDVASAIFSLCILLE 329 (458)
Q Consensus 297 g~i~~Lv~lL~~---------~~~~~~~~a~~aL~~L~~~~~ 329 (458)
.....++.++.. .+.++...++.||.+|...++
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 233445555542 377888899999999986544
No 241
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=56.75 E-value=3.8 Score=34.40 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=9.2
Q ss_pred CCcccccccccccc
Q 012677 77 PYEFRCPISGEIMT 90 (458)
Q Consensus 77 ~~~~~C~ic~~~~~ 90 (458)
+..+.|++|+-+..
T Consensus 136 ~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 136 KKVYICPICGYTAV 149 (170)
T ss_dssp SCEEECTTTCCEEE
T ss_pred CCeeEeCCCCCeeC
Confidence 35567888776654
No 242
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=56.41 E-value=5.5 Score=31.26 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=36.0
Q ss_pred CccccccccccccC-CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTD-PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~-p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
+=|.|..|...+.+ +....-|..||..|..+.+. ..|+.|++++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA---VVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC---CBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC---ccCcccCCcCCc
Confidence 45899999988865 34456788999999877653 479999999875
No 243
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=56.17 E-value=2.7 Score=29.86 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=32.5
Q ss_pred CCccccccccccccC-CccC--CCcccccHHHHHHHHhc---CCCCCCCCCccCC
Q 012677 77 PYEFRCPISGEIMTD-PVVL--ANGQTFDRPCIQRWLDE---GNRTCPQTRQVLS 125 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~-p~~l--~cgh~fc~~ci~~~~~~---~~~~CP~c~~~l~ 125 (458)
.+...|++|...-.+ .++. .|...||..|+..-... +...||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345679999876543 2333 48889999998644332 3457999976554
No 244
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=55.75 E-value=9.3 Score=36.18 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=63.6
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHh--------cCCHHHHHHHHHHHHHhhccCcc-hhHhhccC
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVR--------TGTIETRRNAAAALFSLSALDSN-KLIIGKLG 297 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~--------~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g 297 (458)
.+..+-.+++++.|+-.+......++........++..+. ..+..++..++.++.|++..... +. +..
T Consensus 212 ~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~e 288 (362)
T 3l3f_X 212 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLE 288 (362)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTT
T ss_pred ChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHH
Confidence 6788889999999998888754444433212233444331 22467889999999999864311 11 122
Q ss_pred chHHHHHHhh---------cCChHHHHHHHHHHHHhcccc
Q 012677 298 AMTPLIDLLE---------EGHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 298 ~i~~Lv~lL~---------~~~~~~~~~a~~aL~~L~~~~ 328 (458)
....++.++. ..+.++...++.||.+|...+
T Consensus 289 l~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 289 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 3445666665 247888899999999998643
No 245
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=55.71 E-value=27 Score=30.59 Aligned_cols=71 Identities=4% Similarity=0.058 Sum_probs=54.2
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh-CCHHHHHHHHHHHHHHHh
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN-GTSRAKRKANGILERLNK 450 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 450 (458)
+..|.+-|.+ .++.++..|+.+|..+..+-+......+....++..|.+++.. ....+++++..+|.....
T Consensus 47 ~ral~krl~~-~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVND-KNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 5667777774 4699999999999999887665555555556677788888765 467899999999887664
No 246
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=54.23 E-value=8.4 Score=25.14 Aligned_cols=18 Identities=28% Similarity=0.803 Sum_probs=14.3
Q ss_pred CCcCCCCCCccccccccc
Q 012677 70 DDHLLGLPYEFRCPISGE 87 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~ 87 (458)
.....++++++.||+|..
T Consensus 27 Gt~f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 27 GTKFEDLPDDWACPVCGA 44 (52)
T ss_dssp SCCTTSSCTTCCCSSSCC
T ss_pred CCchHHCCCCCcCCCCCC
Confidence 445567899999999985
No 247
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=53.94 E-value=7.3 Score=28.51 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=39.6
Q ss_pred CCCCCCCCccCCCCCCcc--cHH-HHHHHHHHHHHhC-CCCCCCCCCC-CCcccchhhhhhhhhhHHhh
Q 012677 114 NRTCPQTRQVLSHTVLIP--NHL-VREMISQWCKEHG-IELPKPIKDT-DEDVVTDASRSHLNSLLEKM 177 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~--n~~-l~~~i~~~~~~~~-~~~p~~~~~~-~~~~~~~~~~~~l~~Lv~~l 177 (458)
...||+|...+..+...+ .+. .+.-|..|....+ ..||.-.... ....+.++ ..+..+++.+
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n--~~l~~~i~~~ 79 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN--KFLRQAVNNF 79 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEEC--HHHHHHHHHH
T ss_pred CCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcC--HHHHHHHHHH
Confidence 457999999887765545 343 3677888887654 6788766554 23334443 3566666655
No 248
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=52.83 E-value=75 Score=29.13 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=88.4
Q ss_pred HHHHHhcC------CHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchh
Q 012677 261 LIDSVRTG------TIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKR 332 (458)
Q Consensus 261 Lv~lL~~~------~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~ 332 (458)
+..+++++ +.+....|...|..+|.+-+.-..|.+ -..+..|+ +.....+.+++.|+++|...-.+.+...
T Consensus 27 ~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al 105 (315)
T 3qml_C 27 MRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVV 105 (315)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHH
Confidence 44566666 344567777778888776666555554 23333333 2233466789999999887777665322
Q ss_pred H-HHh--hCcHHHHHHHhcc----C-----CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhc-CChhHHhHHH
Q 012677 333 R-AVH--AGAVRVILRKIME----N-----SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRES-TCERNKENCA 399 (458)
Q Consensus 333 ~-i~~--~g~v~~Lv~ll~~----~-----~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~ 399 (458)
. +.+ ...+..+..-|.. + .+.++-+.+|-.|..++. .+ ...++..|.+++... .++.+|..++
T Consensus 106 ~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl 181 (315)
T 3qml_C 106 EFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVL 181 (315)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHH
Confidence 2 333 2455544444332 1 357778999999998762 12 244688888888743 1589999999
Q ss_pred HHHHHHhc
Q 012677 400 AILYNICF 407 (458)
Q Consensus 400 ~~L~~L~~ 407 (458)
.++..+-.
T Consensus 182 ~li~d~f~ 189 (315)
T 3qml_C 182 ELISKILK 189 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 88877763
No 249
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=51.50 E-value=45 Score=27.24 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=52.4
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHH-HHHHhhh---CCHHHHHHHHHHHHHHHh
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGT-LSRLAEN---GTSRAKRKANGILERLNK 450 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~-L~~ll~~---~~~~~~~~A~~~L~~l~~ 450 (458)
+..|.+-|++..++.++..|+.+|..+..+........+....++.- |++++.. ....+++++..++..-..
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 56677777643458999999999999998776555555555667776 7777742 235799999988887664
No 250
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=49.57 E-value=15 Score=29.59 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=29.9
Q ss_pred CCccccccccccccCCccC--CCcccccHHHHHHHHh----------cCCCCCCCCCc
Q 012677 77 PYEFRCPISGEIMTDPVVL--ANGQTFDRPCIQRWLD----------EGNRTCPQTRQ 122 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l--~cgh~fc~~ci~~~~~----------~~~~~CP~c~~ 122 (458)
..+..|.+|.+--. ++. .|...||..||.+-+. .+.-.||.|..
T Consensus 61 g~~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34567999986332 111 5888999999986552 24458999963
No 251
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=49.22 E-value=45 Score=28.92 Aligned_cols=71 Identities=8% Similarity=0.063 Sum_probs=52.7
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-CHHHHHHHHHHHHHHHh
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG-TSRAKRKANGILERLNK 450 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~A~~~L~~l~~ 450 (458)
+..|.+-|.+ .++.++..|+.+|..+..+-+......+....++.-|++++.+. +..+++++..++..-..
T Consensus 44 ~r~l~krl~~-~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 44 FAAIKKKMNS-PNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 5566677775 45999999999999999877655544454556788888887653 57899998888877664
No 252
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=48.92 E-value=41 Score=26.92 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=52.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
++..|.+-|.++++.++..|..+|-.+..+-.. ...+.....+..|+.+++..++.++...+..+...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 455567777888888888888888777765433 3445566678888888877788999999988887654
No 253
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=48.67 E-value=1.4 Score=40.95 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=32.0
Q ss_pred CCccccccccccccCCccC----CCc--ccccHHHHHHHHhcCCCCCCCCCcc
Q 012677 77 PYEFRCPISGEIMTDPVVL----ANG--QTFDRPCIQRWLDEGNRTCPQTRQV 123 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l----~cg--h~fc~~ci~~~~~~~~~~CP~c~~~ 123 (458)
...-.||+|+....--++. .-| +-+|..|=.+|--. ...||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 3456799999866544433 245 45788998888764 4579999986
No 254
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=48.18 E-value=18 Score=30.02 Aligned_cols=48 Identities=6% Similarity=0.135 Sum_probs=36.4
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
++=|.|..|...+.+-....=|..||..|..+.+. ..|..|+.++...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCC
Confidence 35689999998887644445688999999988774 3699998887654
No 255
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=47.89 E-value=13 Score=27.42 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=29.1
Q ss_pred CCccccccccccccCCccC--C--Cc-ccccHHHHHHHHhc---CCCCCCCCCccC
Q 012677 77 PYEFRCPISGEIMTDPVVL--A--NG-QTFDRPCIQRWLDE---GNRTCPQTRQVL 124 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l--~--cg-h~fc~~ci~~~~~~---~~~~CP~c~~~l 124 (458)
.+...| +|.+.....++. . |. ..||..|+. +.. +...||.|....
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 455678 999865444332 2 55 579999986 322 345899997654
No 256
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=47.83 E-value=7.5 Score=25.61 Aligned_cols=18 Identities=22% Similarity=0.724 Sum_probs=14.1
Q ss_pred CCcCCCCCCccccccccc
Q 012677 70 DDHLLGLPYEFRCPISGE 87 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~ 87 (458)
.....++++++.||+|..
T Consensus 27 Gt~fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 27 GTDFKDIPDDWVCPLCGV 44 (54)
T ss_dssp TCCGGGSCTTCBCTTTCC
T ss_pred CCChhHCCCCCcCcCCCC
Confidence 344557899999999985
No 257
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=47.01 E-value=4.8 Score=21.61 Aligned_cols=11 Identities=27% Similarity=0.954 Sum_probs=8.4
Q ss_pred ccccccccccc
Q 012677 80 FRCPISGEIMT 90 (458)
Q Consensus 80 ~~C~ic~~~~~ 90 (458)
..||+|++.|.
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 46888888775
No 258
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=46.64 E-value=31 Score=30.93 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc
Q 012677 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE 308 (458)
Q Consensus 229 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 308 (458)
+.+...+.-...+..+.+. .+... +++.++.+-...+.++|...+..|...+..+. -.-..+++.|..+|++
T Consensus 30 ~~kl~~L~qa~el~~~~dp--~ll~~--~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCA--ELAEE--FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTG--GGHHH--HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCH--hHHHH--HHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcC
Confidence 4555666666666555431 23332 66667776666789999999999988874321 1123467788888888
Q ss_pred CChHHHHHHHHHHHH
Q 012677 309 GHPLAMKDVASAIFS 323 (458)
Q Consensus 309 ~~~~~~~~a~~aL~~ 323 (458)
.++.+.+.+..+..+
T Consensus 102 ~d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 102 NSAQVIKRVIQACGS 116 (257)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888777765443
No 259
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=46.61 E-value=13 Score=31.21 Aligned_cols=46 Identities=7% Similarity=0.154 Sum_probs=26.1
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
=|.|..|...+.+-....=|..||..|..+.+. ..|..|+.++...
T Consensus 87 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 87 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPT 132 (182)
T ss_dssp TTSCTTTCCCCSSCCEEETTEEECHHHHHHTTS---CCCTTTCCCCCSS
T ss_pred cCccCCCCCccCCCceeECCEeeecCccccccc---cccccCCCccCCC
Confidence 355666665554322233456677777655442 3677787776543
No 260
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=45.30 E-value=11 Score=27.09 Aligned_cols=18 Identities=22% Similarity=0.590 Sum_probs=13.3
Q ss_pred CCcCCCCCCccccccccc
Q 012677 70 DDHLLGLPYEFRCPISGE 87 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~ 87 (458)
.....++|+++.||+|..
T Consensus 51 GT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 51 GTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp TCCTTTSCTTCCCTTTCC
T ss_pred CCChhHCCCCCcCCCCCC
Confidence 344456888899999975
No 261
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=45.01 E-value=5 Score=30.40 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=17.1
Q ss_pred ccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccC
Q 012677 89 MTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 89 ~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l 124 (458)
+.+|.-..||+.|+ .-+. ....||.|+..-
T Consensus 65 v~p~~C~~CG~~F~-----~~~~-kPsrCP~CkSe~ 94 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK-----AEIN-IPSRCPKCKSEW 94 (105)
T ss_dssp ECCCBBTTTCCBCC-----CCSS-CCSSCSSSCCCC
T ss_pred EECcChhhCcCeec-----ccCC-CCCCCcCCCCCc
Confidence 34444457888872 1111 245799998653
No 262
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.81 E-value=3 Score=37.45 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=41.8
Q ss_pred CCCCCCCccCCCCCC--cccHH-HHHHHHHHHHHhC-CCCCC--CCCCCCCcccchhhhhhhhhhHHhh
Q 012677 115 RTCPQTRQVLSHTVL--IPNHL-VREMISQWCKEHG-IELPK--PIKDTDEDVVTDASRSHLNSLLEKM 177 (458)
Q Consensus 115 ~~CP~c~~~l~~~~~--~~n~~-l~~~i~~~~~~~~-~~~p~--~~~~~~~~~~~~~~~~~l~~Lv~~l 177 (458)
.+||.|...+..+.. .-.+. .+..|.+|...++ ..||. ..+......+.|+. .+..+++.+
T Consensus 182 l~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~--~L~~lve~~ 248 (267)
T 3htk_C 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDP--IMELRCKIA 248 (267)
T ss_dssp SBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECH--HHHHHHHHH
T ss_pred eECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCH--HHHHHHHHH
Confidence 489999999977643 22333 5888888887643 57998 44666666677663 677777765
No 263
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=44.37 E-value=17 Score=25.41 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=30.0
Q ss_pred CCCccccccccccccCCccC--C--Cc-ccccHHHHHHHHhc---CCCCCCCCCccCC
Q 012677 76 LPYEFRCPISGEIMTDPVVL--A--NG-QTFDRPCIQRWLDE---GNRTCPQTRQVLS 125 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l--~--cg-h~fc~~ci~~~~~~---~~~~CP~c~~~l~ 125 (458)
..+...| ||...-...++. . |. ..||..|+. +.. +...||.|.....
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 3455678 898865444333 2 55 589999986 332 3458999976543
No 264
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=43.37 E-value=10 Score=25.12 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=13.7
Q ss_pred CCcCCCCCCccccccccc
Q 012677 70 DDHLLGLPYEFRCPISGE 87 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~ 87 (458)
.....++++++.||+|..
T Consensus 27 Gt~f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 27 GTRWEDIPADWVCPDCGV 44 (55)
T ss_dssp TCCGGGSCTTCCCTTTCC
T ss_pred CCChhHCCCCCcCCCCCC
Confidence 344556889999999975
No 265
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.92 E-value=23 Score=24.24 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=20.6
Q ss_pred ccccccccccccCC-ccCCCcccccHHHHHHHHh
Q 012677 79 EFRCPISGEIMTDP-VVLANGQTFDRPCIQRWLD 111 (458)
Q Consensus 79 ~~~C~ic~~~~~~p-~~l~cgh~fc~~ci~~~~~ 111 (458)
=|.|..|...+.+- ....=|..||..|..+.+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 46777777666432 3334566777777776665
No 266
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=42.56 E-value=8.7 Score=24.35 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=11.4
Q ss_pred CCCCCccccccccc
Q 012677 74 LGLPYEFRCPISGE 87 (458)
Q Consensus 74 ~~~~~~~~C~ic~~ 87 (458)
.++++++.||+|..
T Consensus 25 ~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 25 DQLPDDWCCPVCGV 38 (46)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCcCCCC
Confidence 35788899999985
No 267
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=42.43 E-value=10 Score=24.74 Aligned_cols=18 Identities=28% Similarity=0.772 Sum_probs=13.7
Q ss_pred CCcCCCCCCccccccccc
Q 012677 70 DDHLLGLPYEFRCPISGE 87 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~ 87 (458)
.....++++++.||+|..
T Consensus 26 Gt~f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 26 GTKFEDLPDDWVCPLCGA 43 (52)
T ss_dssp TCCGGGSCTTCBCTTTCC
T ss_pred CCCHhHCCCCCcCCCCCC
Confidence 344456899999999975
No 268
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=40.85 E-value=68 Score=26.37 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=52.3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--chhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhcc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~ 326 (458)
++..|.+-|.++++.++..|..+|-.+..+-. -...|.....+..|+.++.. .++.++..++..|..-+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 45557777888888999988888888877642 24456667788888888875 477899888888876654
No 269
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=40.57 E-value=79 Score=25.55 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=54.3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhc------CChHHHHHHHHHHHHhccc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEE------GHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~aL~~L~~~ 327 (458)
++..|.+-|.++++.++..|..+|-.+..+-.. ...|.....+..|++++.. .++.++...+..+..-+..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 455677778888999999999888888776533 4556667788889999863 4778999999888877643
No 270
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=40.33 E-value=8.8 Score=28.63 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=33.3
Q ss_pred CccccccccccccCC-ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDP-VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p-~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
+=|.|..|...+.+. ....=|..||..|..+.+ ...|..|++++..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCcccc
Confidence 458899998887654 334578889999875433 3479999998874
No 271
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.13 E-value=31 Score=24.28 Aligned_cols=39 Identities=10% Similarity=0.322 Sum_probs=26.3
Q ss_pred cccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 80 FRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
..|+-|.+.+.+.++..-|..||..| +.|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPDH---------FNCANCGKELTAD 54 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTTT---------SBCSSSCCBCCTT
T ss_pred CCCccCCCEecceEEEECcceeCCCC---------CEeCCCCCccCCC
Confidence 46888887776666556666666544 4677888777654
No 272
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=40.06 E-value=12 Score=25.13 Aligned_cols=44 Identities=16% Similarity=0.465 Sum_probs=29.6
Q ss_pred CCccccccccccccCCccC--CCcccccHHHHHHHHh---cCCCCCCCCCc
Q 012677 77 PYEFRCPISGEIMTDPVVL--ANGQTFDRPCIQRWLD---EGNRTCPQTRQ 122 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l--~cgh~fc~~ci~~~~~---~~~~~CP~c~~ 122 (458)
..+..|.+|.+- .-++. .|...||..|+..-+. .+.-.||.|..
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 445679999873 23333 4888999999976443 23347999864
No 273
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=40.05 E-value=14 Score=25.83 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=14.0
Q ss_pred CCcCCCCCCccccccccc
Q 012677 70 DDHLLGLPYEFRCPISGE 87 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~ 87 (458)
.....++++++.||+|..
T Consensus 31 GT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 31 GTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp SCCGGGSCTTCBCTTTCC
T ss_pred CCchhhCCCCCcCCCCCC
Confidence 344566899999999985
No 274
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=40.04 E-value=18 Score=28.38 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=37.5
Q ss_pred CCccccccccccccC---CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTD---PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~---p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
++=|.|..|...+.+ +....=|..||..|..+.+.. ...|+.|+.++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 356899999988853 445567889999999887752 2269999998865
No 275
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=39.73 E-value=7.2 Score=33.18 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=37.0
Q ss_pred CccccccccccccC---CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTD---PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~---p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
+=|.|..|...+.+ +....=|..||..|..+.+.. ...|+.|++++..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 45899999988864 555567889999999887752 1169999998865
No 276
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=39.60 E-value=14 Score=24.87 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=20.8
Q ss_pred ccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 81 RCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.|+-|.+...+.++..-|..|+..| +.|..|+.++..
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 7 ICGACRRPIEGRVVNAMGKQWHVEH---------FVCAKCEKPFLG 43 (66)
T ss_dssp EETTTTEECCSCEECCTTSBEETTT---------CBCTTTCCBCSS
T ss_pred CCcccCCEecceEEEECccccccCc---------CEECCCCCCCCC
Confidence 4666666555554445555555443 346666666654
No 277
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=39.54 E-value=6.6 Score=28.87 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=33.1
Q ss_pred CCCccccccccccc---cCCccC--CCcccccHHHHHHHHh-cCCCCCCCCCccCCCCC
Q 012677 76 LPYEFRCPISGEIM---TDPVVL--ANGQTFDRPCIQRWLD-EGNRTCPQTRQVLSHTV 128 (458)
Q Consensus 76 ~~~~~~C~ic~~~~---~~p~~l--~cgh~fc~~ci~~~~~-~~~~~CP~c~~~l~~~~ 128 (458)
..++..|.||...- .+.+++ .|.-.|+..|+..-.. .+.-.||.|........
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 45667899999753 123333 4888899999864322 23447888866554433
No 278
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=39.37 E-value=16 Score=28.51 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=40.3
Q ss_pred CCCCCCCCccCCCCCCcc-cHH-HHHHHHHHHHHhCCCCCCCCCCCCC-cccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIP-NHL-VREMISQWCKEHGIELPKPIKDTDE-DVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~-n~~-l~~~i~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~l~~Lv~~l~ 178 (458)
...||+|...+..+...+ .|. .+.-|..|...+...||.-...... ..+.+| ..+..+++.+-
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n--~~l~~~i~~~~ 117 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVN--QPLQTVLNQLF 117 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCC--HHHHHHHHHHS
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCC--HHHHHHHHHHc
Confidence 357999998887654333 222 4677888888666788876655544 334443 36777776663
No 279
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=39.16 E-value=13 Score=23.88 Aligned_cols=42 Identities=26% Similarity=0.557 Sum_probs=26.4
Q ss_pred cccccccccc-CCccC--CCcccccHHHHHHHHhc---CCCCCCCCCc
Q 012677 81 RCPISGEIMT-DPVVL--ANGQTFDRPCIQRWLDE---GNRTCPQTRQ 122 (458)
Q Consensus 81 ~C~ic~~~~~-~p~~l--~cgh~fc~~ci~~~~~~---~~~~CP~c~~ 122 (458)
.|.+|...-. +.++. .|...||..|+..-+.. +.-.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888876432 22332 48889999999654332 3347998864
No 280
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=39.09 E-value=24 Score=33.50 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=40.9
Q ss_pred CccccccccccccCCcc---CCCcccccHHHHHHHHhc---------CCCCCCCCCccCCCCCCcccHHHHHHHHHHHHH
Q 012677 78 YEFRCPISGEIMTDPVV---LANGQTFDRPCIQRWLDE---------GNRTCPQTRQVLSHTVLIPNHLVREMISQWCKE 145 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~---l~cgh~fc~~ci~~~~~~---------~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~ 145 (458)
.+..|.+|.+--. -+. -.|...||..||.+++.. ..-.|=.|.-.....-+.+-..-+..+..|+.+
T Consensus 92 ~~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~~~ll~~r~~w~~~~~~f~~~ 170 (386)
T 2pv0_B 92 YQSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSGLLQRRRKWRSQLKAFYDR 170 (386)
T ss_dssp SBCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCEETTEEBCSSHHHHHHHHHHH
T ss_pred CcccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcchHhhhhhhhhHHHHHHHHHhh
Confidence 3556788775331 111 158899999999998842 233788887554344443322234456667655
Q ss_pred hC
Q 012677 146 HG 147 (458)
Q Consensus 146 ~~ 147 (458)
..
T Consensus 171 ~~ 172 (386)
T 2pv0_B 171 ES 172 (386)
T ss_dssp HC
T ss_pred cc
Confidence 43
No 281
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=38.91 E-value=16 Score=29.78 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=41.3
Q ss_pred CCCCCCCCccCCCCCCccc-H-HHHHHHHHHHHHhCCCCCCCCCCCCCc-ccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIPN-H-LVREMISQWCKEHGIELPKPIKDTDED-VVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~-~l~~~i~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~l~~Lv~~l~ 178 (458)
...||+|...+..+...+- + ..+.-|..|...+...||......... .+.+| ..++.++..+.
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n--~~l~~lv~~~~ 143 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPN--EILQTLLDLFF 143 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBC--HHHHHHHHHHS
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCC--HHHHHHHHHHh
Confidence 3579999988876543332 2 247778899887666888776665544 34443 36777777664
No 282
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.66 E-value=15 Score=25.11 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=10.6
Q ss_pred ccccccccccCCccCCCcccccHH
Q 012677 81 RCPISGEIMTDPVVLANGQTFDRP 104 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~cgh~fc~~ 104 (458)
.|.-|.+.+.+.++..-|..||..
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~ 30 (70)
T 2d8x_A 7 GCHQCGEFIIGRVIKAMNNSWHPE 30 (70)
T ss_dssp BCSSSCCBCCSCCEEETTEEECTT
T ss_pred cCccCCCEecceEEEECccccccc
Confidence 355555544443333344444433
No 283
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.61 E-value=14 Score=26.88 Aligned_cols=40 Identities=13% Similarity=0.384 Sum_probs=28.6
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.-.|+-|.+.+.+.++..-|..||..| +.|-.|+.+|...
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEE---------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTT---------CBCSSSCCBCSSS
T ss_pred CCCCccCCCEecceEEEECCccccccC---------CccCCCCCCCCCC
Confidence 346888888777766666777777655 4688888888654
No 284
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=38.35 E-value=1.2e+02 Score=26.78 Aligned_cols=100 Identities=10% Similarity=0.063 Sum_probs=64.4
Q ss_pred cCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC----------CcHHHHHHHHHHhcCCHH-HHHHHHh
Q 012677 308 EGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN----------SLVDELLAILAMLSSHQD-AIEEIGE 375 (458)
Q Consensus 308 ~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~----------~~~~~a~~~L~~La~~~~-~~~~i~~ 375 (458)
++.+..+--+++++.|+..++. .+..+.+......+++.+.+. .++-.++.++.|++..-- .+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4467788889999999999998 676665554455666655321 355667778888876211 111 1
Q ss_pred cCCHHHHHHHHhh--------cCChhHHhHHHHHHHHHhccCc
Q 012677 376 LGAIPCLLRIIRE--------STCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 376 ~g~i~~Lv~ll~~--------~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
......+++++.. ..+.+....++-+|.+|...++
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 2234556666652 1247788888889999987554
No 285
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=38.22 E-value=19 Score=25.24 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=20.2
Q ss_pred ccccccccccccCCcc----CCCcccccHHHHH
Q 012677 79 EFRCPISGEIMTDPVV----LANGQTFDRPCIQ 107 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~----l~cgh~fc~~ci~ 107 (458)
.-.|.+|...|.--.. -.||+.||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3479999987752111 2599999999853
No 286
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=38.15 E-value=77 Score=25.56 Aligned_cols=71 Identities=17% Similarity=0.086 Sum_probs=55.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--chhHhhccCchHHHHHHhhc------CChHHHHHHHHHHHHhccc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKLIIGKLGAMTPLIDLLEE------GHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~aL~~L~~~ 327 (458)
++..|.+-|+++++.++..|..+|-.+..+-. -...+.....+..|+.++.. .++.++..++..+..-+..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999988887643 34566777888899998864 3678999998888876643
No 287
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.88 E-value=13 Score=29.34 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=20.1
Q ss_pred cccccccccccCCcc----CCCcccccHHHHH
Q 012677 80 FRCPISGEIMTDPVV----LANGQTFDRPCIQ 107 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~----l~cgh~fc~~ci~ 107 (458)
..|.+|...|.--.. -.||+.||..|..
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 469999987752211 2699999999954
No 288
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.24 E-value=23 Score=24.58 Aligned_cols=36 Identities=19% Similarity=0.457 Sum_probs=18.6
Q ss_pred ccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 81 RCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.|+-|...+.+.++..-|..||..| +.|-.|+.+|.
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHYHPSC---------ALCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCBCTTT---------SCCSSSCCCCC
T ss_pred CcccCCCEecCeeEEeCCCCCCCCc---------CEeCCCCCCCC
Confidence 3566665555544444555555433 34555655554
No 289
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=37.21 E-value=10 Score=25.59 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=29.0
Q ss_pred CccccccccccccCCccC--CCcccccHHHHHHHHhc---CCCCCCCCCccC
Q 012677 78 YEFRCPISGEIMTDPVVL--ANGQTFDRPCIQRWLDE---GNRTCPQTRQVL 124 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l--~cgh~fc~~ci~~~~~~---~~~~CP~c~~~l 124 (458)
.+..|.+|.+- +-++. .|...||..|+..-+.. +.-.||.|....
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45669999862 22333 48888999998754432 334799997543
No 290
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=36.80 E-value=47 Score=20.79 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=24.4
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHh-----cCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD-----EGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~-----~~~~~CP~c~~~l~~ 126 (458)
..+.|++|...|... .-+..+.. .....|+.|+..+..
T Consensus 11 k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 11 KPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp CCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 457899988777653 33444432 224589999988753
No 291
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=36.58 E-value=18 Score=22.98 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=23.1
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.+.|++|...|.....+. .| +..........||.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~~~l~-~H------~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-IH------LRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-HH------HHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChHHHH-HH------HHHcCCCCCcCCCCCcchhCC
Confidence 467999988887643221 00 111222334589999887654
No 292
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.15 E-value=33 Score=24.07 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=29.0
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
...-.|+-|.+...+.++..-|..||..| +.|-.|+.+|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPEC---------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTT---------TSCSSSCCCHHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCc---------CeeCCCCCCCCC
Confidence 34457999988877766656777777665 468888877753
No 293
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=36.11 E-value=17 Score=26.50 Aligned_cols=18 Identities=22% Similarity=0.625 Sum_probs=12.8
Q ss_pred CCcCCCCCCccccccccc
Q 012677 70 DDHLLGLPYEFRCPISGE 87 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~ 87 (458)
.....++++++.||+|..
T Consensus 59 GT~fedlPddW~CPvCga 76 (87)
T 1s24_A 59 GTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CCCGGGCCTTCCCSSSCC
T ss_pred CCChhHCCCCCCCCCCCC
Confidence 344456788888888874
No 294
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=36.09 E-value=20 Score=24.93 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=32.2
Q ss_pred CCccccccccccccC-CccCCCcccccH-HHHHHHHhcCCCCCCCCCccC
Q 012677 77 PYEFRCPISGEIMTD-PVVLANGQTFDR-PCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~-p~~l~cgh~fc~-~ci~~~~~~~~~~CP~c~~~l 124 (458)
++=|.|..|...+.+ +....=|..||. .|..+.+. ..|..|+..+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~---~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG---PKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS---CCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC---ccCCCcCCce
Confidence 345889999988876 444457888999 69877664 3588887554
No 295
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=35.74 E-value=7.7 Score=32.88 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=29.7
Q ss_pred cccccccccccCCc----cC---CCcccccHHHHHH------HHh----cCCCCCCCCCccC
Q 012677 80 FRCPISGEIMTDPV----VL---ANGQTFDRPCIQR------WLD----EGNRTCPQTRQVL 124 (458)
Q Consensus 80 ~~C~ic~~~~~~p~----~l---~cgh~fc~~ci~~------~~~----~~~~~CP~c~~~l 124 (458)
..||||.....+.- .+ .|...||..|+.- -+. .....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 35999998876542 33 4888999999621 121 1256899997654
No 296
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=35.41 E-value=17 Score=31.27 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=8.8
Q ss_pred Ccccccccccccc
Q 012677 78 YEFRCPISGEIMT 90 (458)
Q Consensus 78 ~~~~C~ic~~~~~ 90 (458)
..+.|++|+-+..
T Consensus 170 ~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 170 KFHLCPICGYIHK 182 (202)
T ss_dssp CEEECSSSCCEEE
T ss_pred cEEEECCCCCEEc
Confidence 4577888876654
No 297
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=34.78 E-value=68 Score=26.62 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=54.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--chhHhhccCchHHHHHHhhc------CChHHHHHHHHHHHHhccc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKLIIGKLGAMTPLIDLLEE------GHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~aL~~L~~~ 327 (458)
++..|.+-|+++++.++..|..+|-.+..+-. -...|.+...+..|+.++.. .+..++..++..|..-+..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45567788888999999999999988887642 34556777788899999863 2578899998888876543
No 298
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.45 E-value=21 Score=24.45 Aligned_cols=37 Identities=27% Similarity=0.487 Sum_probs=17.4
Q ss_pred cccccccccc--CCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 81 RCPISGEIMT--DPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 81 ~C~ic~~~~~--~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.|+-|.+.+. +.++..-|..|+..| +.|-.|+.++..
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWHEHC---------FLCSGCEQPLGS 45 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEETTT---------CBCTTTCCBTTT
T ss_pred CCccCCCccccCccEEEECccccCccc---------CeECCCCCcCCC
Confidence 3555555544 233334444444433 345555555543
No 299
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=34.39 E-value=32 Score=25.63 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=40.7
Q ss_pred CCCccccccccccccCCccCC-------CcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLA-------NGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~-------cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
.++.++|||.++..+..|.+. | ..|+...+.+....+. .=|..|.+++...+
T Consensus 24 ~ee~l~CPITL~~PE~GVFvkNs~~S~VC-sLyD~~Al~~Lv~~~~-~HPLSREpit~sMI 82 (102)
T 2kkx_A 24 PLEAIQCPITLEQPEKGIFVKNSDGSDVC-TLFDAAAFSRLVGEGL-PHPLTREPITASII 82 (102)
T ss_dssp CTGGGCBTTTTBCCSEEEEEEETTTTSEE-EEEEHHHHHHHHHHTC-CCTTTCCCCCTTTE
T ss_pred CHHHcCCCeEEeeCCcceEEecCCCCccc-eecCHHHHHHHHhcCC-CCCCccCCCCHhhE
Confidence 466789999999999888762 3 2589999999998754 46899999887643
No 300
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=34.12 E-value=11 Score=32.20 Aligned_cols=9 Identities=22% Similarity=0.604 Sum_probs=7.1
Q ss_pred CCCCCCCcc
Q 012677 115 RTCPQTRQV 123 (458)
Q Consensus 115 ~~CP~c~~~ 123 (458)
..||+|+.+
T Consensus 172 ~~CP~C~~~ 180 (191)
T 1lko_A 172 ELCPACAHP 180 (191)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCcCC
Confidence 379999876
No 301
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.54 E-value=39 Score=24.29 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.....|.-|.+.+.+.++..-|..||..| +.|-.|+..|...
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC---------FVCADCNLNLKQK 64 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT---------CCCSSSCCCTTTS
T ss_pred CcCCCcccCCCEecccEEEECCceECccC---------CEecCCCCCCCCC
Confidence 44567999998888766656777777665 4688999888754
No 302
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.30 E-value=58 Score=23.32 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=26.2
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhc----CCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE----GNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~----~~~~CP~c~~~l~~ 126 (458)
....+.|++|...|... .-+...... ..+.|+.|++.+..
T Consensus 25 ~~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 25 SAECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CCTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 34557899998888763 334444432 23579999888754
No 303
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.13 E-value=70 Score=22.53 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=29.2
Q ss_pred Ccccccccccccc--CCccC--CCcccccHHHHHHH---H-hcCCCCCCCCCccCC
Q 012677 78 YEFRCPISGEIMT--DPVVL--ANGQTFDRPCIQRW---L-DEGNRTCPQTRQVLS 125 (458)
Q Consensus 78 ~~~~C~ic~~~~~--~p~~l--~cgh~fc~~ci~~~---~-~~~~~~CP~c~~~l~ 125 (458)
+...| ||..... ..++- .|...||..|+.-- . ......||.|.....
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 34457 8987663 22221 48889999997321 1 124568999987653
No 304
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.67 E-value=49 Score=25.23 Aligned_cols=44 Identities=9% Similarity=0.159 Sum_probs=26.8
Q ss_pred Cccccccccccc-------cCCccC--CCcccccHHHHHH------HHhcCCCCCCCCC
Q 012677 78 YEFRCPISGEIM-------TDPVVL--ANGQTFDRPCIQR------WLDEGNRTCPQTR 121 (458)
Q Consensus 78 ~~~~C~ic~~~~-------~~p~~l--~cgh~fc~~ci~~------~~~~~~~~CP~c~ 121 (458)
....|.+|..-- .+..+. .|+..||..|+.. .+..+.-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 345688887531 123333 5999999999842 3334445677764
No 305
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=32.42 E-value=3.7e+02 Score=26.35 Aligned_cols=162 Identities=9% Similarity=0.052 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHhcccCch-hhhhhhcCCCCHHHHHHHH-hcC-----CHHHHHHHHHHHHHhhccCcchhHhhccCchHH
Q 012677 229 GLLEDLITTILNLSIHDE-NKRLVAENPLAIPLLIDSV-RTG-----TIETRRNAAAALFSLSALDSNKLIIGKLGAMTP 301 (458)
Q Consensus 229 ~~~~~a~~~L~~ls~~~~-~~~~i~~~~~~i~~Lv~lL-~~~-----~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~ 301 (458)
...+++.-.|...+..+. +.+. .++.+-++| +++ +++........+...+..+ .+.+.=-++.
T Consensus 51 ~Lie~~~LnL~~~t~~~~~~~~~------ll~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~Fd----~VLevysve~ 120 (500)
T 3vld_A 51 TLLRKCSLNLVTVVSLPDMDVKP------LLATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMADFD----DVLEVYSAED 120 (500)
T ss_dssp HHHHHHHHHHHHSCSCCSCCCHH------HHHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSCHH----HHHHHSCHHH
T ss_pred HHHHHHhhcchhcccCCcccHHH------HHHHHHHHHcCCccccccCHHHHHHHHHHHHhcCCHH----HHHHhCCHHH
Confidence 444454445554444433 2222 344455666 331 3444444444455444444 3333335788
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC----C-cHHHHHHHHHHhcCCHHHHHHHHhc
Q 012677 302 LIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN----S-LVDELLAILAMLSSHQDAIEEIGEL 376 (458)
Q Consensus 302 Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~-~~~~a~~~L~~La~~~~~~~~i~~~ 376 (458)
|+.-|.++.+.+...|+.++. ...-+..+...+++..|++++.+. + +....=.++..|++++=.|+.+.+.
T Consensus 121 i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~n 196 (500)
T 3vld_A 121 LVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLFDN 196 (500)
T ss_dssp HHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHTT
T ss_pred HHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 899999988889999999888 444566677789999999999876 2 4444555566677777788888876
Q ss_pred CCHHHHHHHHhhcCChhHHhHHHHHHHHHh
Q 012677 377 GAIPCLLRIIRESTCERNKENCAAILYNIC 406 (458)
Q Consensus 377 g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 406 (458)
. . .+..-+++..+......-+..|.-+.
T Consensus 197 n-l-~lL~~vK~~~~~i~~sRLLdll~il~ 224 (500)
T 3vld_A 197 N-L-PYLVSVKGRMETVSFVRLIDFLTIEF 224 (500)
T ss_dssp T-H-HHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred h-H-HHHHHHhcCCCceeHHHHHHHHHHHh
Confidence 5 4 44444554433444444444444443
No 306
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.31 E-value=27 Score=23.87 Aligned_cols=36 Identities=11% Similarity=0.287 Sum_probs=16.9
Q ss_pred ccccccccccC----CccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 81 RCPISGEIMTD----PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 81 ~C~ic~~~~~~----p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.|+-|.+...+ .++..-|..||..| +.|-.|+.+|.
T Consensus 7 ~C~~C~~~I~~~~~~~~~~a~~~~wH~~C---------F~C~~C~~~L~ 46 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKYISFEERQWHNDC---------FNCKKCSLSLV 46 (72)
T ss_dssp SBTTTTBCCCCSSSCSCEECSSCEECTTT---------CBCSSSCCBCT
T ss_pred CCcCCCccccCCCCcceEEECCcccCccc---------CEeccCCCcCC
Confidence 35555554443 33333444444433 24555555554
No 307
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.07 E-value=53 Score=19.37 Aligned_cols=13 Identities=23% Similarity=0.756 Sum_probs=9.6
Q ss_pred ccccccccccccC
Q 012677 79 EFRCPISGEIMTD 91 (458)
Q Consensus 79 ~~~C~ic~~~~~~ 91 (458)
.|.|++|...|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (45)
T 2epq_A 10 PYSCPVCGLRFKR 22 (45)
T ss_dssp SSEETTTTEECSC
T ss_pred CCcCCCCCcccCC
Confidence 4778888877765
No 308
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=32.05 E-value=5.1 Score=28.82 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=22.9
Q ss_pred cccccc--cccccc-C----CccC------CCcccccHHHHHHHHh
Q 012677 79 EFRCPI--SGEIMT-D----PVVL------ANGQTFDRPCIQRWLD 111 (458)
Q Consensus 79 ~~~C~i--c~~~~~-~----p~~l------~cgh~fc~~ci~~~~~ 111 (458)
-.-||- |...+. + ++.- .||+.||..|-..|-.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 556887 876553 1 2333 4899999999888764
No 309
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.95 E-value=67 Score=28.01 Aligned_cols=70 Identities=11% Similarity=0.173 Sum_probs=48.9
Q ss_pred cHHHHHHHhccC--CcHHHHHHHHHHhcCC--HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 339 AVRVILRKIMEN--SLVDELLAILAMLSSH--QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 339 ~v~~Lv~ll~~~--~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
++..|.+-|.++ .++..|+.+|-.+..+ ..-..+|.+...+..|++++....+..+++.++.+|...+..
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 344455555544 4566778887777773 445666766667778888887655689999999999887754
No 310
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=31.83 E-value=30 Score=26.99 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=29.0
Q ss_pred ccccccccccccCCc-cCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 79 EFRCPISGEIMTDPV-VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~-~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
...|+-|.....+.. +..-|..||..|+ .|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF---------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCL---------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTS---------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEccccc---------CcCcCCCccc
Confidence 457999998887764 4467888888886 3778888875
No 311
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=31.70 E-value=25 Score=25.37 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=21.4
Q ss_pred CccccccccccccCCcc----CCCcccccHHHHHH
Q 012677 78 YEFRCPISGEIMTDPVV----LANGQTFDRPCIQR 108 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~----l~cgh~fc~~ci~~ 108 (458)
+...|.+|...|.--.. -.||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 34579999987752211 26999999998643
No 312
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.68 E-value=24 Score=25.33 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=20.7
Q ss_pred ccccccccccccCCcc----CCCcccccHHHHHH
Q 012677 79 EFRCPISGEIMTDPVV----LANGQTFDRPCIQR 108 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~----l~cgh~fc~~ci~~ 108 (458)
...|.+|...|.--.. -.||..||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3469999987762111 26999999998643
No 313
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=31.62 E-value=17 Score=28.26 Aligned_cols=11 Identities=9% Similarity=0.259 Sum_probs=8.2
Q ss_pred CC-CCCCCCccC
Q 012677 114 NR-TCPQTRQVL 124 (458)
Q Consensus 114 ~~-~CP~c~~~l 124 (458)
.. .||.|+.+.
T Consensus 89 ~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 89 DYGVCEKCHSKN 100 (119)
T ss_dssp TTCCCSSSSSCC
T ss_pred CCCcCccccCCC
Confidence 45 799998773
No 314
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=31.02 E-value=36 Score=21.39 Aligned_cols=36 Identities=11% Similarity=0.277 Sum_probs=22.0
Q ss_pred cccccccccccCCccCCCcccccHHHHHHHHh----cCCCCCCCCCccCCC
Q 012677 80 FRCPISGEIMTDPVVLANGQTFDRPCIQRWLD----EGNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~----~~~~~CP~c~~~l~~ 126 (458)
+.|++|...|..+.. +..+.. .....|+.|+..+..
T Consensus 2 ~~C~~C~~~f~~~~~-----------l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 2 YICEECGIRXKKPSM-----------LKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CBCTTTCCBCSSHHH-----------HHHHHHHTSSCCCEECSSSSCEESS
T ss_pred CcCCCCcCcCCCHHH-----------HHHHHHhcCCCCCccCCCCCchhcC
Confidence 568888877765432 333332 223579999887753
No 315
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=30.58 E-value=31 Score=22.87 Aligned_cols=37 Identities=22% Similarity=0.480 Sum_probs=23.7
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHH----hcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWL----DEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~----~~~~~~CP~c~~~l~~ 126 (458)
.|.|++|...|.... .+.... ......|+.|++.+..
T Consensus 4 py~C~~C~k~F~~~~-----------~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYRDAS-----------GLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEESSHH-----------HHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeCCHH-----------HHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 367888888777642 233332 2335689999988764
No 316
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=30.12 E-value=1.2e+02 Score=21.87 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=12.4
Q ss_pred CCCccccccccccccC
Q 012677 76 LPYEFRCPISGEIMTD 91 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~ 91 (458)
....|.|++|...|..
T Consensus 14 ~~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 14 TKKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCCBCSSSCCBCSS
T ss_pred CCcCeECCCCCCccCC
Confidence 4456899999988865
No 317
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.95 E-value=49 Score=22.26 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=24.8
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHh----cCCCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD----EGNRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~----~~~~~CP~c~~~l~~ 126 (458)
...|.|++|...|..... +..+.. .....|+.|+..+..
T Consensus 15 ~~~~~C~~C~k~f~~~~~-----------l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGN-----------LASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCSBCCTTSSCCBSCHHH-----------HHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCeECCCCCceeCCHHH-----------HHHHHHHcCCCCCEECCCCCchhCC
Confidence 456889999888876432 222222 234579999887754
No 318
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=29.93 E-value=28 Score=23.75 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=19.6
Q ss_pred CCccccccccccccCCcc-C----CCcccccHHHH
Q 012677 77 PYEFRCPISGEIMTDPVV-L----ANGQTFDRPCI 106 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~-l----~cgh~fc~~ci 106 (458)
++...|++|.....+-.. + .|...||+.|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 345679999987643222 2 57788999996
No 319
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=29.91 E-value=6.7 Score=28.60 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=18.7
Q ss_pred cccccccccc-C----CccCC-CcccccHHHHHHH
Q 012677 81 RCPISGEIMT-D----PVVLA-NGQTFDRPCIQRW 109 (458)
Q Consensus 81 ~C~ic~~~~~-~----p~~l~-cgh~fc~~ci~~~ 109 (458)
-||-|...+. + +|.-+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4998876542 2 23334 8888887776665
No 320
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=29.68 E-value=17 Score=27.17 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=27.8
Q ss_pred CccccccccccccCCccC---CCcccccHHHHHHHHhc--CCCCCCCCCc
Q 012677 78 YEFRCPISGEIMTDPVVL---ANGQTFDRPCIQRWLDE--GNRTCPQTRQ 122 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l---~cgh~fc~~ci~~~~~~--~~~~CP~c~~ 122 (458)
+...| ||.....+-.++ .|...|+..|+..-... ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34568 898765544333 48888999997542221 2358999963
No 321
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.32 E-value=22 Score=25.08 Aligned_cols=39 Identities=21% Similarity=0.420 Sum_probs=23.8
Q ss_pred cccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 80 FRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
-.|+-|...+.+.++..-|..|+..| +.|..|+.+|...
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (81)
T 2dlo_A 16 EKCATCSQPILDRILRAMGKAYHPGC---------FTCVVCHRGLDGI 54 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT---------CBCSSSCCBCTTS
T ss_pred CccccCCCeecceeEEECCccccHHh---------cCcccCCCccCCC
Confidence 35777777666654445566666544 4577777776543
No 322
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.21 E-value=30 Score=24.31 Aligned_cols=36 Identities=19% Similarity=0.462 Sum_probs=20.0
Q ss_pred ccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 81 RCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.|+-|.+.+.+.++..-|..||..| +.|..|+.+|.
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKYHPEC---------FACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCBCTTS---------CBCTTTCCBCC
T ss_pred cCccCCCCcCceEEEECCceecccc---------CCccCCCCccC
Confidence 4666666555555444555555433 34666666664
No 323
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.83 E-value=18 Score=25.45 Aligned_cols=45 Identities=16% Similarity=0.368 Sum_probs=29.0
Q ss_pred CccccccccccccCCccC---CCcccccHHHHHHH------H--hcCCCCCCCCCcc
Q 012677 78 YEFRCPISGEIMTDPVVL---ANGQTFDRPCIQRW------L--DEGNRTCPQTRQV 123 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l---~cgh~fc~~ci~~~------~--~~~~~~CP~c~~~ 123 (458)
....| +|.....+-..+ .|...||..|+.-- + ......||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 35668 898876542233 48889999997311 1 1246789999654
No 324
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.66 E-value=51 Score=19.89 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=21.4
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhc----CCCCCCCCCc
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE----GNRTCPQTRQ 122 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~----~~~~CP~c~~ 122 (458)
...|.|++|...|... .-+..+... ..+.|+.|++
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 10 RKQVACEICGKIFRDV-----------YHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCSEEETTTTEEESSH-----------HHHHHHGGGSCSCCCCCSCCCCC
T ss_pred CcCeeCCCCCcccCCH-----------HHHHHHHHhcCCCCCccCCCCCC
Confidence 3457899988877653 233444332 2457999864
No 325
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.52 E-value=27 Score=25.16 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=19.6
Q ss_pred ccccccccccccCCcc----CCCcccccHHHH
Q 012677 79 EFRCPISGEIMTDPVV----LANGQTFDRPCI 106 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~----l~cgh~fc~~ci 106 (458)
...|.+|...|.--.. -.||..||..|.
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 3469999987742111 269999999884
No 326
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.31 E-value=36 Score=22.91 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=24.0
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHh----cCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD----EGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~----~~~~~CP~c~~~l~~ 126 (458)
..|.|++|...|..... +..... .....|+.|+..+..
T Consensus 13 k~~~C~~C~k~f~~~~~-----------L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSI-----------LVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCEECSSSCCEESSHHH-----------HHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCccCCCCCCccCCHHH-----------HHHHHHhcCCCCCeECCCCCcccCC
Confidence 45889999887765432 222222 234589999887654
No 327
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.23 E-value=30 Score=24.39 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=28.1
Q ss_pred ccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 81 RCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.|+-|.+...+.++..-|..||..| +.|-.|+.+|...
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~C---------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDC---------FVCAVCRLPFPPG 54 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTT---------SSCSSSCCCCCSS
T ss_pred cCccccCEeccceEEECCceeCccC---------CccccCCCCCCCC
Confidence 6999998777665556677777655 5688999888654
No 328
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=27.71 E-value=50 Score=20.98 Aligned_cols=36 Identities=11% Similarity=0.320 Sum_probs=22.0
Q ss_pred cccccccccccCCccCCCcccccHHHHHHHHhc----CCCCCCCCCccCCC
Q 012677 80 FRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE----GNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~----~~~~CP~c~~~l~~ 126 (458)
|.|++|...|.... -+...... ....||.|+..+..
T Consensus 3 ~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 3 FVCEVCTRAFARQE-----------HLKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp BCCTTTCCCBSCHH-----------HHHHHHHTTTSSCSEECTTTCCEESS
T ss_pred CcCCCCccccCCHH-----------HHHHHHHHhCCCCCccCCCCCCccCC
Confidence 67888887776542 23333321 23479999887653
No 329
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.55 E-value=24 Score=27.51 Aligned_cols=43 Identities=21% Similarity=0.351 Sum_probs=24.9
Q ss_pred CccccccccccccCCcc----CCCcccccHHHHHHHHhcCCCCCCCCC
Q 012677 78 YEFRCPISGEIMTDPVV----LANGQTFDRPCIQRWLDEGNRTCPQTR 121 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~----l~cgh~fc~~ci~~~~~~~~~~CP~c~ 121 (458)
+...|..|...|.--.. -.||..||..|...... ..+.|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHH
Confidence 34579999987753211 26999999999654443 133455553
No 330
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=27.42 E-value=26 Score=25.62 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=20.7
Q ss_pred ccccccccccccCCc----cCCCcccccHHHHHH
Q 012677 79 EFRCPISGEIMTDPV----VLANGQTFDRPCIQR 108 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~----~l~cgh~fc~~ci~~ 108 (458)
...|.+|...|.--. --.||+.||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 356999998775211 126999999999644
No 331
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.17 E-value=42 Score=22.68 Aligned_cols=34 Identities=9% Similarity=0.180 Sum_probs=21.8
Q ss_pred CccccccccccccC-CccCCCcccccHHHHHHHHh
Q 012677 78 YEFRCPISGEIMTD-PVVLANGQTFDRPCIQRWLD 111 (458)
Q Consensus 78 ~~~~C~ic~~~~~~-p~~l~cgh~fc~~ci~~~~~ 111 (458)
+=|.|..|...+.+ +....=|..||..|..+.+.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYA 64 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTC
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhc
Confidence 44778888776654 33344567788888766553
No 332
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=27.11 E-value=28 Score=25.36 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=20.6
Q ss_pred CccccccccccccCCcc----CCCcccccHHHHH
Q 012677 78 YEFRCPISGEIMTDPVV----LANGQTFDRPCIQ 107 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~----l~cgh~fc~~ci~ 107 (458)
+...|.+|...|.--.. -.||+.||..|..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 34479999987752211 2699999998854
No 333
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=27.07 E-value=80 Score=25.61 Aligned_cols=73 Identities=7% Similarity=0.060 Sum_probs=49.0
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhH-HHHHHhhh---CCHHHHHHHHHHHHHHHh
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANG-TLSRLAEN---GTSRAKRKANGILERLNK 450 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~-~L~~ll~~---~~~~~~~~A~~~L~~l~~ 450 (458)
++..|.+-|..+.++.++..|+.+|..+..+.+......+....++. .|++++.. ....+++++..+|...+.
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 35677777764345778888999999988876655444444344554 46666543 234699999998887664
No 334
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.75 E-value=27 Score=24.25 Aligned_cols=38 Identities=18% Similarity=0.475 Sum_probs=22.6
Q ss_pred cccccccccc-CCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 81 RCPISGEIMT-DPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 81 ~C~ic~~~~~-~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.|+-|.+... ...+..-|..||..| +.|..|+.+|...
T Consensus 11 ~C~~C~~~I~~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 11 KCPKCDKTVYFAEKVSSLGKDWHKFC---------LKCERCSKTLTPG 49 (76)
T ss_dssp BCTTTCCBCCTTTEEEETTEEEETTT---------CBCSSSCCBCCTT
T ss_pred CCcCCCCEeECCeEEEECCeEeeCCC---------CCCCCCCCccCCC
Confidence 5777777665 333334555565544 4577777777643
No 335
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.67 E-value=11 Score=31.23 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=8.1
Q ss_pred CCCCCCCccCC
Q 012677 115 RTCPQTRQVLS 125 (458)
Q Consensus 115 ~~CP~c~~~l~ 125 (458)
..||.|+.++.
T Consensus 149 ~~Cp~CG~~~~ 159 (165)
T 2lcq_A 149 GVCPDCGSKVK 159 (165)
T ss_dssp GBCTTTCCBEE
T ss_pred CcCCCCCCcce
Confidence 36999988753
No 336
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=26.34 E-value=28 Score=28.54 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=31.5
Q ss_pred CccccccccccccCCcc----CCCcccccHHHHHHHHhcC---------CCCCCCCCccCCCCCCc
Q 012677 78 YEFRCPISGEIMTDPVV----LANGQTFDRPCIQRWLDEG---------NRTCPQTRQVLSHTVLI 130 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~----l~cgh~fc~~ci~~~~~~~---------~~~CP~c~~~l~~~~~~ 130 (458)
.+..|.+|.+=- + ++ -+|...||..||..++..+ .-.|-+|.-......++
T Consensus 78 ~~~yC~wC~~Gg-~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~l~~ll~ 141 (159)
T 3a1b_A 78 YQSYCTICCGGR-E-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLR 141 (159)
T ss_dssp SBSSCTTTSCCS-E-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSCEETTEE
T ss_pred CcceeeEecCCC-e-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCccHHHHhh
Confidence 355688887532 1 11 1488899999999987642 22688887543333333
No 337
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.68 E-value=30 Score=24.00 Aligned_cols=37 Identities=11% Similarity=0.297 Sum_probs=22.7
Q ss_pred ccccccccccC----CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 81 RCPISGEIMTD----PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 81 ~C~ic~~~~~~----p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.|+-|.+...+ .++..-|..||..| +.|..|+.+|..
T Consensus 7 ~C~~C~~~I~~~g~~~~~~a~~~~wH~~C---------F~C~~C~~~L~~ 47 (76)
T 1x68_A 7 GCVACSKPISGLTGAKFICFQDSQWHSEC---------FNCGKCSVSLVG 47 (76)
T ss_dssp CCTTTCCCCCTTTTCCEEEETTEEEEGGG---------CBCTTTCCBCSS
T ss_pred CCccCCCcccCCCCceeEEECCcccCccc---------CChhhCCCcCCC
Confidence 47777776664 44444566666555 357777777654
No 338
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=25.33 E-value=40 Score=25.83 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=37.5
Q ss_pred CCCCCCCccCCCCCCcc-cH-HHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhh
Q 012677 115 RTCPQTRQVLSHTVLIP-NH-LVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKM 177 (458)
Q Consensus 115 ~~CP~c~~~l~~~~~~~-n~-~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l 177 (458)
..||+|...+..+...+ .+ ..+.-|..|....+..||.-........+.++ ..+...+..+
T Consensus 19 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~--~~l~~~i~~l 81 (118)
T 3hct_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD--NFAKREILSL 81 (118)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC--HHHHHHHHTS
T ss_pred CCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccC--HHHHHHHccc
Confidence 47999998887653333 22 23677888998877788876655544333333 2455555554
No 339
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.95 E-value=72 Score=24.16 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=28.0
Q ss_pred CCccccccccccccC---CccCCCcccccHHHHHHHHhc
Q 012677 77 PYEFRCPISGEIMTD---PVVLANGQTFDRPCIQRWLDE 112 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~---p~~l~cgh~fc~~ci~~~~~~ 112 (458)
++=|.|..|...+.+ +....=|..||..|..+.|..
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred HhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 345899999998874 455567889999999888864
No 340
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.47 E-value=19 Score=27.51 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=9.0
Q ss_pred CCCCCCccCCC
Q 012677 116 TCPQTRQVLSH 126 (458)
Q Consensus 116 ~CP~c~~~l~~ 126 (458)
.||+|+.++..
T Consensus 49 ~CPvCgs~l~~ 59 (112)
T 1l8d_A 49 KCPVCGRELTD 59 (112)
T ss_dssp ECTTTCCEECH
T ss_pred CCCCCCCcCCH
Confidence 59999988863
No 341
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=24.44 E-value=15 Score=31.03 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=29.4
Q ss_pred ccccccccccccCCccC--CCcccccHHHHHHHHhc---CCCCCCCCCccCC
Q 012677 79 EFRCPISGEIMTDPVVL--ANGQTFDRPCIQRWLDE---GNRTCPQTRQVLS 125 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l--~cgh~fc~~ci~~~~~~---~~~~CP~c~~~l~ 125 (458)
+..|.+|.+- .+ ++. .|...||..|+..-+.. +.-.||.|+....
T Consensus 4 ~~~C~~C~~~-g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNG-GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCC-SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCC-Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 4569999854 22 222 48888999998655442 3347999986543
No 342
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=24.31 E-value=58 Score=24.86 Aligned_cols=14 Identities=14% Similarity=0.584 Sum_probs=9.2
Q ss_pred CCCCCCCCCccCCC
Q 012677 113 GNRTCPQTRQVLSH 126 (458)
Q Consensus 113 ~~~~CP~c~~~l~~ 126 (458)
....|+.|+..+..
T Consensus 99 ~~~~C~~C~k~f~~ 112 (129)
T 2wbt_A 99 HTKVCPVCKKEFTS 112 (129)
T ss_dssp CCCBCTTTCCBCSS
T ss_pred CCCCCCCCCcccCC
Confidence 34578888776653
No 343
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=23.91 E-value=21 Score=27.27 Aligned_cols=44 Identities=14% Similarity=0.335 Sum_probs=27.7
Q ss_pred Ccccccccccccc-CCccC--CCcccccHHHHHHHHh---cCCCCCCCCC
Q 012677 78 YEFRCPISGEIMT-DPVVL--ANGQTFDRPCIQRWLD---EGNRTCPQTR 121 (458)
Q Consensus 78 ~~~~C~ic~~~~~-~p~~l--~cgh~fc~~ci~~~~~---~~~~~CP~c~ 121 (458)
.+..|.+|.+.-. ++.+. .|+..||..|+..... .+.-.||.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567999987543 22232 5899999999876543 2333566553
No 344
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.38 E-value=44 Score=23.46 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=23.7
Q ss_pred cccccccccc--CCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 81 RCPISGEIMT--DPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 81 ~C~ic~~~~~--~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.|+-|.+.+. +.++..-|..||..| +.|-.|+.+|...
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNVEYKGTVWHKDC---------FTCSNCKQVIGTG 56 (82)
T ss_dssp BCSSSCCBCCSSSCEEECSSCEEETTT---------CCCSSSCCCCTTS
T ss_pred cCccCCcccccCceEEEECcccccccc---------CchhhCCCccCCC
Confidence 5777777666 444445566666544 4577777777654
No 345
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.25 E-value=35 Score=23.21 Aligned_cols=37 Identities=14% Similarity=0.365 Sum_probs=17.9
Q ss_pred ccccccccccC--CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 81 RCPISGEIMTD--PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 81 ~C~ic~~~~~~--p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.|+-|.+.+.+ .++..-|..|+..| +.|-.|+.++..
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETC---------FICHRCQQPIGT 45 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTT---------TCCSSSCCCCCS
T ss_pred CCccCCCcccCCceEEEECcCeecccC---------CcccccCCccCC
Confidence 46666655542 23333444444333 345556555543
No 346
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=23.17 E-value=4.4 Score=27.10 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=22.3
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHh--cCCCCCCCCCccCCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD--EGNRTCPQTRQVLSHT 127 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~--~~~~~CP~c~~~l~~~ 127 (458)
..|.|++|...|.....+ . ..- .....|+.|+..+...
T Consensus 13 k~~~C~~C~k~F~~~~~l-----------~-~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEAN-----------Q-LFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SEEECSSSCCEEEHHHHH-----------H-HEETTTTEEBCSSSCCBCEEC
T ss_pred CCccCCCCCchhccHHHh-----------H-hhcCCCCCEECCCCCCccccC
Confidence 347898887766542211 1 111 2245899999888643
No 347
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.07 E-value=46 Score=28.07 Aligned_cols=51 Identities=14% Similarity=0.357 Sum_probs=0.0
Q ss_pred cccccccccccCCccCC-CcccccHHHHHHHHhcC---------------------------------------------
Q 012677 80 FRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEG--------------------------------------------- 113 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~--------------------------------------------- 113 (458)
|.|..|...+.+-.... =|..||..|..+.+...
T Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 114 (192)
T 1b8t_A 35 FLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGG 114 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCCcCccccccccCC
Q ss_pred CCCCCCCCccCCCCCCc
Q 012677 114 NRTCPQTRQVLSHTVLI 130 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~ 130 (458)
...|+.|+.++......
T Consensus 115 ~~~C~~C~~~I~~~~~v 131 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKV 131 (192)
T ss_dssp CEECTTTSCEECSSSCE
T ss_pred CCcCCCCCCEecCcEEE
No 348
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.58 E-value=43 Score=23.36 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=20.5
Q ss_pred ccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 81 RCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.|+-|.+.+.+..+..-|..|+..| +.|-.|+.+|..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 17 RCARCSKTLTQGGVTYRDQPWHREC---------LVCTGCQTPLAG 53 (80)
T ss_dssp CCTTTCCCCCSCCEESSSSEECTTT---------CBCSSSCCBCTT
T ss_pred cCCCCCCEecCcEEEECCchhhhhh---------CCcccCCCcCCC
Confidence 4666666555544444555555443 356666666643
No 349
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.56 E-value=60 Score=21.81 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=21.7
Q ss_pred CccccccccccccCC-ccCCCcccccHHHHHHHHh
Q 012677 78 YEFRCPISGEIMTDP-VVLANGQTFDRPCIQRWLD 111 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p-~~l~cgh~fc~~ci~~~~~ 111 (458)
+=|.|..|...+.+. ....=|..||..|..+.+.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 347777777766543 2334567788888776664
No 350
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=22.44 E-value=5.2e+02 Score=24.77 Aligned_cols=129 Identities=10% Similarity=0.047 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhccCcchhHhhccCchHHHH-HHhhcCChHHHHHHHHHHHHhcccccchhHHHhh-CcHHHHHHHhccC
Q 012677 273 RRNAAAALFSLSALDSNKLIIGKLGAMTPLI-DLLEEGHPLAMKDVASAIFSLCILLENKRRAVHA-GAVRVILRKIMEN 350 (458)
Q Consensus 273 ~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~ 350 (458)
+-.+.-+|+-+..+..... .|..++ ..+.+..+..+--++++|.||..+......++.. .....+++.+.+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 3445555555554443322 222233 2333456778888999999999988854444443 3456667666321
Q ss_pred ----------CcHHHHHHHHHHhcCCHH-HHHHHHhcCCHHHHHHHHhh--------cCChhHHhHHHHHHHHHhccCc
Q 012677 351 ----------SLVDELLAILAMLSSHQD-AIEEIGELGAIPCLLRIIRE--------STCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 351 ----------~~~~~a~~~L~~La~~~~-~~~~i~~~g~i~~Lv~ll~~--------~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
.++-.++.++.|++..-- .+. +...+..+++++.. ..+.+....++.||.+|....+
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 355567777888876211 111 12234566666651 2357888889999999997554
No 351
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=22.32 E-value=64 Score=21.53 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=25.9
Q ss_pred ccccccccccCCcc---CCCcccccHHHHHHHHhcCCCCCCCC
Q 012677 81 RCPISGEIMTDPVV---LANGQTFDRPCIQRWLDEGNRTCPQT 120 (458)
Q Consensus 81 ~C~ic~~~~~~p~~---l~cgh~fc~~ci~~~~~~~~~~CP~c 120 (458)
.|--|+..+.+... -.|++.||..|=. +.-+.-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCC
Confidence 48888888866542 2599999999932 222223479988
No 352
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.06 E-value=1.2e+02 Score=17.69 Aligned_cols=14 Identities=21% Similarity=0.473 Sum_probs=10.2
Q ss_pred ccccccccccccCC
Q 012677 79 EFRCPISGEIMTDP 92 (458)
Q Consensus 79 ~~~C~ic~~~~~~p 92 (458)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eov_A 12 PYKCSDCGKSFTWK 25 (46)
T ss_dssp SCBCSSSCCBCSSH
T ss_pred CccCCccChhhCCH
Confidence 47788888777653
No 353
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.99 E-value=1.2e+02 Score=17.61 Aligned_cols=14 Identities=14% Similarity=0.477 Sum_probs=10.2
Q ss_pred ccccccccccccCC
Q 012677 79 EFRCPISGEIMTDP 92 (458)
Q Consensus 79 ~~~C~ic~~~~~~p 92 (458)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eq4_A 12 LYNCKECGKSFSRA 25 (46)
T ss_dssp CCCBTTTTBCCSCH
T ss_pred CeECCCCCCccCch
Confidence 47798888777653
No 354
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.82 E-value=62 Score=23.54 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=21.4
Q ss_pred cccccccccc-cCCccCCCcccccHHHHHHHH---hcCCCCCCCCCccCCC
Q 012677 80 FRCPISGEIM-TDPVVLANGQTFDRPCIQRWL---DEGNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~-~~p~~l~cgh~fc~~ci~~~~---~~~~~~CP~c~~~l~~ 126 (458)
+.|++|...| ... .-+..+. ......|+.|++.+..
T Consensus 35 ~~C~~C~k~F~~~~-----------~~L~~H~~~h~~k~~~C~~Cgk~F~~ 74 (96)
T 2ctd_A 35 VSCPTCQAVGRKTI-----------EGLKKHMENCKQEMFTCHHCGKQLRS 74 (96)
T ss_dssp EECTTTCSCEESSH-----------HHHHHHHHHHCCCCCCCSSSCCCCSS
T ss_pred cCCCCCCCCcccCH-----------HHHHHHHHHHCCCCeECCCCCCeeCC
Confidence 5677776666 432 2232222 3345689999988754
No 355
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.68 E-value=20 Score=23.97 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=22.7
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..+.|++|...|.....+.- .....|+.|+..+..
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSCQ 51 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCSC
T ss_pred CCeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhcC
Confidence 45889999988876544432 234567777766654
No 356
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=21.60 E-value=54 Score=24.88 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=37.8
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhh
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKM 177 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l 177 (458)
...||+|...+..+...+- +. .+.-|.+|....+..||.-........+.++ ...+..++..+
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~-~~~l~~~i~~l 87 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP-VKSFLNILNSL 87 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC-CHHHHHHHHHC
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc-HHHHHHHHHHh
Confidence 3479999988876543332 22 3777889998767788876655544333322 12344444444
No 357
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.54 E-value=1.2e+02 Score=17.65 Aligned_cols=15 Identities=20% Similarity=0.627 Sum_probs=10.7
Q ss_pred CccccccccccccCC
Q 012677 78 YEFRCPISGEIMTDP 92 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p 92 (458)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2ytn_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred cCeECCCCCCeeCCH
Confidence 347799888777653
No 358
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=21.50 E-value=1.6e+02 Score=23.90 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=54.1
Q ss_pred hhhhhhhHHhhc--CCcHHHHHHHHHHHHHHhhC-chhhhhhhhccCChHH-HhhccCCCCCCCChhHHHHHHHHHHhcc
Q 012677 167 RSHLNSLLEKMS--SSLSDQKEAAKELRLLTKRM-PLFRALFGESTDAIPL-LLSPLSPGRADTDPGLLEDLITTILNLS 242 (458)
Q Consensus 167 ~~~l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~-Lv~lL~~~~~~~~~~~~~~a~~~L~~ls 242 (458)
.++++.|.+.+. .++.++..|+..|-.+.++. +.+...+.. ...+.. |+.++... ......++..++..+...+
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~-~~fl~e~Lvk~~~~k-~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVAS-QDFVESVLVRTILPK-NNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHTHHHHSTT-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhh-HHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHHHH
Confidence 357888888885 46788999999998888875 566666776 677776 77777532 1124588888888887665
No 359
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=21.49 E-value=39 Score=27.64 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=40.0
Q ss_pred CCCCCCCccCCCCCCc-c-cHH-HHHHHHHHHHHhCCCCCCCCCCCC-CcccchhhhhhhhhhHHhhc
Q 012677 115 RTCPQTRQVLSHTVLI-P-NHL-VREMISQWCKEHGIELPKPIKDTD-EDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 115 ~~CP~c~~~l~~~~~~-~-n~~-l~~~i~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~l~~Lv~~l~ 178 (458)
..||+|...+..+... + .+. ...-|..|.......||.-..... ...+.++ ..+..+|..+.
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~--~~l~~~i~~~~ 120 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPD--PNFDALISKIY 120 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEEC--HHHHHHHHHHC
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcC--HHHHHHHHHHH
Confidence 3699999888765322 2 222 477889998876777887665543 2334444 36777887774
No 360
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.33 E-value=93 Score=20.96 Aligned_cols=39 Identities=8% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhc----CCCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE----GNRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~----~~~~CP~c~~~l~~ 126 (458)
...|.|++|...|.... -+..+... ....|+.|+..+..
T Consensus 16 ~~~~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSS-----------DLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp SCSSBCSSSCCBCSCHH-----------HHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCCEECCCCCcccCCHH-----------HHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 34588999988776532 23333332 23479999887654
No 361
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.29 E-value=1.6e+02 Score=27.19 Aligned_cols=80 Identities=8% Similarity=-0.038 Sum_probs=39.9
Q ss_pred HHHHHhcCCCCcChhHHHHHHHHHHhhccccccCCCCcCCCCCCCCcCCCCCCcccccccccccc--CCccC-C-Ccccc
Q 012677 26 LVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKKPHSFKGGAAGDDHLLGLPYEFRCPISGEIMT--DPVVL-A-NGQTF 101 (458)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ic~~~~~--~p~~l-~-cgh~f 101 (458)
|.+.+.+.+. ..+..++|..++..........- +..+++..+...|...+..+. .|.+. | ||-.|
T Consensus 229 fArrLLel~p--~~~~a~qArkil~~ce~~~~Da~---------eidyD~~~~F~iCa~s~tPIY~g~~~v~Cp~cgA~y 297 (325)
T 3mv2_A 229 FAGEFLKIIS--SGPRAEQARKIKNKADSMASDAI---------PIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKY 297 (325)
T ss_dssp HHHHHHTTCC--SSHHHHHHHHHHHHHHTSCCCSS---------CCSCCTTSCEEECTTTCCEEESSSCEEECTTTCCEE
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCcc---------ccCCCCCCCceeecCCcccccCCCCCccCCCCCCee
Confidence 4445555443 35666777766666553322111 111112223345666665332 34333 3 67666
Q ss_pred cHHHHHHHHhcCCCCCCCCCcc
Q 012677 102 DRPCIQRWLDEGNRTCPQTRQV 123 (458)
Q Consensus 102 c~~ci~~~~~~~~~~CP~c~~~ 123 (458)
+... ....||+|+-.
T Consensus 298 ~~~~-------kG~lC~vC~l~ 312 (325)
T 3mv2_A 298 VITE-------KDKIDRIAMIS 312 (325)
T ss_dssp EGGG-------TTSBCSSSSCB
T ss_pred chhh-------CCCCCCCCcCc
Confidence 6443 24579999743
No 362
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.25 E-value=2.4e+02 Score=25.95 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHHhcCCCCcChhHHHHHHHHHHhhccccccCCCCcCCCCCCCCcCCCCCCcccccccccccc--CCccC-C-Ccccc
Q 012677 26 LVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKKPHSFKGGAAGDDHLLGLPYEFRCPISGEIMT--DPVVL-A-NGQTF 101 (458)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ic~~~~~--~p~~l-~-cgh~f 101 (458)
|.+.+.+.+ ...+..++|..++..........- +..+++..+...|...+..+. .|.+. | ||-.|
T Consensus 220 fArrLLel~--p~~~~~~qArkil~~ce~~~~da~---------eidyD~~~~f~iCa~s~tPIY~g~~~v~Cp~cgA~y 288 (320)
T 3mkr_B 220 FARRLLELG--PKPEVAQQTRKILSACEKNPTDAY---------QLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACY 288 (320)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHSCCBSS---------CCSCCTTSCCCBBTTTCCBCCTTSCCEECTTTCCEE
T ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCcc---------ccCCCCCCccceecCCCccccCCCCCccCCCCCCee
Confidence 444555543 235666777777766653322211 111111223345766665432 34333 4 77766
Q ss_pred cHHHHHHHHhcCCCCCCCCCcc
Q 012677 102 DRPCIQRWLDEGNRTCPQTRQV 123 (458)
Q Consensus 102 c~~ci~~~~~~~~~~CP~c~~~ 123 (458)
+... ....||+|+-.
T Consensus 289 ~~~~-------kG~lC~vC~l~ 303 (320)
T 3mkr_B 289 SPEF-------KGQICKVTTVT 303 (320)
T ss_dssp CGGG-------TTSBCTTTSSB
T ss_pred chhh-------CCCCCCCCcCc
Confidence 6543 24579999743
No 363
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.83 E-value=1.3e+02 Score=17.58 Aligned_cols=14 Identities=14% Similarity=0.596 Sum_probs=10.5
Q ss_pred ccccccccccccCC
Q 012677 79 EFRCPISGEIMTDP 92 (458)
Q Consensus 79 ~~~C~ic~~~~~~p 92 (458)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ytt_A 12 PYQCSECGKSFSGS 25 (46)
T ss_dssp TTCCSSSCCCCSSH
T ss_pred CeeCCCCCcccCCH
Confidence 47788888877764
No 364
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.81 E-value=1.3e+02 Score=17.47 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=10.3
Q ss_pred ccccccccccccCC
Q 012677 79 EFRCPISGEIMTDP 92 (458)
Q Consensus 79 ~~~C~ic~~~~~~p 92 (458)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eop_A 12 PHECRECGKSFSFN 25 (46)
T ss_dssp SCBCTTTCCBCSSH
T ss_pred CeeCCCCCchhCCH
Confidence 47798888777653
No 365
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=20.79 E-value=4.2e+02 Score=25.07 Aligned_cols=180 Identities=14% Similarity=0.098 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC
Q 012677 230 LLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG 309 (458)
Q Consensus 230 ~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~ 309 (458)
.+...+.-+..|..+.+. .+.. .+++.++.+-...+.++|...+.+|...+..+ .+.+ ..+++.|..+|++.
T Consensus 41 ~Kl~~L~q~~EL~l~~dp--sLl~--~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~--~el~--~~~l~~L~~LL~d~ 112 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDP--TLLD--NFLDEIIAFQADKSIEVRKFVIGFIEEACKRD--IELL--LKLIANLNMLLRDE 112 (386)
T ss_dssp HHHHHHHHHHHHHHTTCG--GGGG--GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GGGH--HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhccCH--HHHH--HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHcCC
Confidence 344445555554433221 2333 38888888888889999999999998877532 1111 34677888888888
Q ss_pred ChHHHHHHHHHHHHh--------cccccc---hhHHHhh--CcHHHHHHHhccC--CcHHHHHHHHHHhc--CC---HH-
Q 012677 310 HPLAMKDVASAIFSL--------CILLEN---KRRAVHA--GAVRVILRKIMEN--SLVDELLAILAMLS--SH---QD- 368 (458)
Q Consensus 310 ~~~~~~~a~~aL~~L--------~~~~~~---~~~i~~~--g~v~~Lv~ll~~~--~~~~~a~~~L~~La--~~---~~- 368 (458)
++.+.+.+..+..++ +.++.. .....+. ..-..++.++.++ .++-.|+..+..+. .+ .+
T Consensus 113 d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~ 192 (386)
T 3o2t_A 113 NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADS 192 (386)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCc
Confidence 888877766554433 222221 1122221 2333444555444 45555665555432 11 01
Q ss_pred ----------------------HHHHHHh--cCCHHHHHHHHhhc-CChhHHhHHHHHHHHHhccCchhHHHHH
Q 012677 369 ----------------------AIEEIGE--LGAIPCLLRIIRES-TCERNKENCAAILYNICFTDRTRTREIM 417 (458)
Q Consensus 369 ----------------------~~~~i~~--~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 417 (458)
+...+.. .|.+..|+..+... .+...-..++..|..|+...+.-+..++
T Consensus 193 ~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl 266 (386)
T 3o2t_A 193 EIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVI 266 (386)
T ss_dssp CCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred ccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 0233322 24577788888742 2344556678888888887765544443
No 366
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=20.58 E-value=43 Score=18.88 Aligned_cols=25 Identities=16% Similarity=0.394 Sum_probs=16.6
Q ss_pred ccccccccccCCcc-CCCcccccHHH
Q 012677 81 RCPISGEIMTDPVV-LANGQTFDRPC 105 (458)
Q Consensus 81 ~C~ic~~~~~~p~~-l~cgh~fc~~c 105 (458)
.||.|.......-. ..=|..|++.|
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred cCCccCCEEecceeEEECCeEecccC
Confidence 59999876653322 24577888877
No 367
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=20.48 E-value=2e+02 Score=22.84 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=45.7
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh---------hC-C--HHHHHHHHHHHH
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE---------NG-T--SRAKRKANGILE 446 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~---------~~-~--~~~~~~A~~~L~ 446 (458)
+..|.+-|.+. ++.++..|+.+|..|+.+....+..-+...- .+++-+. .| + ..++.+|..++.
T Consensus 51 m~~L~kRL~~k-~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~---~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 51 SEFILKRLDNK-SPIVKQKALRLIKYAVGKSGSEFRREMQRNS---VAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT---HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CcceeehHHHHHHHHHHhCCHHHHHHHHHhH---HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 46667777754 5889999999999999877655444443221 2333321 12 1 358999999998
Q ss_pred HHHhhH
Q 012677 447 RLNKAA 452 (458)
Q Consensus 447 ~l~~~~ 452 (458)
.|....
T Consensus 127 ll~d~~ 132 (140)
T 1vdy_A 127 AIFSEE 132 (140)
T ss_dssp HHTCCS
T ss_pred HHhCcC
Confidence 886443
No 368
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.36 E-value=55 Score=22.22 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=23.5
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHh----c--CCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD----E--GNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~----~--~~~~CP~c~~~l~~ 126 (458)
..|.|++|...|.... -+..... . ....||.|+..+..
T Consensus 14 k~~~C~~C~k~f~~~~-----------~L~~H~~~~h~~~~~~~~C~~C~~~f~~ 57 (77)
T 2ct1_A 14 KPYECYICHARFTQSG-----------TMKMHILQKHTENVAKFHCPHCDTVIAR 57 (77)
T ss_dssp CSEECTTTCCEESCHH-----------HHHHHHHHHSSSSCSSEECSSSSCEESS
T ss_pred CCeECCCcCchhCCHH-----------HHHHHHHHhcCCCCCccCCCCCCCccCC
Confidence 3488999988776542 2333322 1 24579999887653
No 369
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=20.35 E-value=28 Score=29.61 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=21.4
Q ss_pred CCccccccccccccCCccCCCcccccHHHHH
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQ 107 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~ 107 (458)
.....|++|++.+-++ |-.+|+.|..
T Consensus 161 ~~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC-----CCcCCccccC
Confidence 4567899999988766 8899999963
No 370
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.32 E-value=1.4e+02 Score=17.41 Aligned_cols=14 Identities=14% Similarity=0.546 Sum_probs=10.3
Q ss_pred ccccccccccccCC
Q 012677 79 EFRCPISGEIMTDP 92 (458)
Q Consensus 79 ~~~C~ic~~~~~~p 92 (458)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ytq_A 12 PYGCSECGKAFSSK 25 (46)
T ss_dssp SCBCSSSCCBCSCH
T ss_pred CcCCCccChhhCCh
Confidence 47899888777653
No 371
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.31 E-value=1.3e+02 Score=17.55 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=10.3
Q ss_pred ccccccccccccCC
Q 012677 79 EFRCPISGEIMTDP 92 (458)
Q Consensus 79 ~~~C~ic~~~~~~p 92 (458)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2epz_A 12 PFDCIDCGKAFSDH 25 (46)
T ss_dssp SBCCTTTCCCBSSH
T ss_pred CeECCCCCceeCCH
Confidence 47798888777653
No 372
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=20.30 E-value=4.2e+02 Score=25.95 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=68.1
Q ss_pred CChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHH
Q 012677 226 TDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDL 305 (458)
Q Consensus 226 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l 305 (458)
-|.+....-+..+...+..++ +.+.- -+.-++..|.+++..+...|+.++. ....+..+...+.+..|+.+
T Consensus 91 lD~~~Li~Ll~~il~~~~Fd~----VLevy-sve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~l 161 (500)
T 3vld_A 91 LNYDYLLDVVDKLVPMADFDD----VLEVY-SAEDLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDI 161 (500)
T ss_dssp CCHHHHHHHHHHHHHHSCHHH----HHHHS-CHHHHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCHHH----HHHhC-CHHHHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHH
Confidence 455655555666655554443 33332 5677899999999999999999888 44567778889999999998
Q ss_pred hhcCCh--H-HHHHHHHHHHHhcccccchhHHHh
Q 012677 306 LEEGHP--L-AMKDVASAIFSLCILLENKRRAVH 336 (458)
Q Consensus 306 L~~~~~--~-~~~~a~~aL~~L~~~~~~~~~i~~ 336 (458)
+-..+. . +....=.++..|+.++=.+.++.+
T Consensus 162 yFd~~t~i~~vvn~IE~~~~~LssdeLirrril~ 195 (500)
T 3vld_A 162 LFDEKVENDKLITAIEKALERLSTDELIRRRLFD 195 (500)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred HcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 865532 2 555555566677655434555444
No 373
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=20.21 E-value=1.4e+02 Score=17.41 Aligned_cols=14 Identities=14% Similarity=0.581 Sum_probs=10.3
Q ss_pred ccccccccccccCC
Q 012677 79 EFRCPISGEIMTDP 92 (458)
Q Consensus 79 ~~~C~ic~~~~~~p 92 (458)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2emk_A 12 PYECKECGKAFSQT 25 (46)
T ss_dssp SCBCSSSCCBCSCH
T ss_pred ceECCCCCchhCCH
Confidence 47798888777653
No 374
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.12 E-value=74 Score=21.01 Aligned_cols=38 Identities=5% Similarity=-0.038 Sum_probs=24.0
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHhc----CCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE----GNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~----~~~~CP~c~~~l~~ 126 (458)
..|.|++|...|.... -+..+... ....|+.|+..+..
T Consensus 8 ~~~~C~~C~k~f~~~~-----------~L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKA-----------ALRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CSEECSSSSCEESSHH-----------HHHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCeECCCCCcccCCHH-----------HHHHHHHHcCCCCCEeCCCCCCccCC
Confidence 4578999988777532 23333332 23579999887754
No 375
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=20.12 E-value=99 Score=24.32 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=27.8
Q ss_pred CccccccccccccCCccC--CCcccccHHHHHHHH----------hcCCCCCCCCCc
Q 012677 78 YEFRCPISGEIMTDPVVL--ANGQTFDRPCIQRWL----------DEGNRTCPQTRQ 122 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l--~cgh~fc~~ci~~~~----------~~~~~~CP~c~~ 122 (458)
.+..|.+|.+=-. ++. .|-..||..||.+-+ ..+.-.|+.|..
T Consensus 56 ~~~~C~vC~dGG~--LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSE--EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCe--eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4455999975322 111 588899999998752 123458999943
No 376
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=20.11 E-value=48 Score=21.61 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=22.9
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHh------cCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD------EGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~------~~~~~CP~c~~~l~~ 126 (458)
.|.|++|...|.... -+..... .....||.|+..+..
T Consensus 10 ~~~C~~C~k~f~~~~-----------~l~~H~~~~H~~~~~~~~C~~C~k~f~~ 52 (66)
T 2drp_A 10 TYRCKVCSRVYTHIS-----------NFCRHYVTSHKRNVKVYPCPFCFKEFTR 52 (66)
T ss_dssp EEECTTTCCEESSHH-----------HHHHHHHHHSSSSCCCEECTTTCCEESC
T ss_pred ceECCCCcchhCCHH-----------HHHHHHHHHcCCCCcCeECCCCCCccCC
Confidence 477998887776542 2333322 123579999887754
No 377
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.06 E-value=44 Score=23.08 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=26.2
Q ss_pred cccccccccccC-----CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 80 FRCPISGEIMTD-----PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 80 ~~C~ic~~~~~~-----p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
-.|+-|.+.+.+ .++..-|..|+..| +.|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC---------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT---------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc---------CEehhcCCCCCCC
Confidence 358888887774 44445566666554 4688888888654
Done!