BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012678
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/472 (29%), Positives = 226/472 (47%), Gaps = 36/472 (7%)
Query: 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN------SPNP---SNYPHFSFNS 67
V++ P P+QGHINP+ +LA +L+ +GF IT ++T +N S P + F+F S
Sbjct: 11 VVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFES 70
Query: 68 ISESLWESEVS---TENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWH 124
I + L E +++ +L + + P+ + L +L ++ PVTCL++D
Sbjct: 71 IPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRL-NHSTNVPPVTCLVSDCCMS 129
Query: 125 FAQTVADTLRLPRIVLRTXXXXXXXXXXXXXXXXEKGYLAEQDSQ------LEKPVTELP 178
F A+ LP ++ + E+G + +D LE V +P
Sbjct: 130 FTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIP 189
Query: 179 PL---RVKDIP--IIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDF 233
L R+KDI I T+ + V + + ++ N+F +LE + L
Sbjct: 190 GLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTI 249
Query: 234 PIPMFPIGPFHKYCL---------AXXXXXXXXXXXCISWLDKQAAKSVMYVSFGSIVVV 284
P ++PIGP + C+ WL+ + SV+YV+FGS V+
Sbjct: 250 P-SIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVM 308
Query: 285 NVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEV 344
+ LE AWGLAN + FLW++RP LV G + F + RG I W PQ +V
Sbjct: 309 TPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVI--FSSEFTNEIADRGLIASWCPQDKV 366
Query: 345 LAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFER 404
L HP++GGF TH GWNST ESIC GVPM+C P F DQ + R++ + W +G+ ++ +R
Sbjct: 367 LNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKR 426
Query: 405 REIETAIRRVTVEAEGQEMRERIMHXXXXXXXXXXXAGSSYQSLERLVDHIL 456
E+ I V +G++M+++ M G SY +L +++ +L
Sbjct: 427 EELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 166/349 (47%), Gaps = 16/349 (4%)
Query: 113 PVTCLITDAIWHFAQTVADTLRLPRIVLRTXXXXXXXXXXXXXXXXEK---GYLAEQDSQ 169
PV+CL+ DA FA +A + + + T EK + ++ +
Sbjct: 112 PVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDE 171
Query: 170 LEKPVTELPPLRVKDIPIIVTHDTRN--FHQLISAVVSKTKACSGLIWNSFEDLEQTELT 227
L + + +R +D+ + N F +++ + + + NSFE+L+ + LT
Sbjct: 172 LLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDS-LT 230
Query: 228 RLHKDFPIPMFPIGPFHKYCLAXXXXXXXXXXXCISWLDKQAAKSVMYVSFGSIVVVNVT 287
K IGPF+ L C+ WL ++ SV+Y+SFG++
Sbjct: 231 NDLKSKLKTYLNIGPFN---LITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPA 287
Query: 288 EFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAH 347
E + ++ L SRVPF+W +R + LP+GFLE G G +V WAPQ EVLAH
Sbjct: 288 EVVALSEALEASRVPFIWSLRD------KARVHLPEGFLEKTRGYGMVVPWAPQAEVLAH 341
Query: 348 PAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERK-FERRE 406
AVG F TH GWNS ES+ GVP+IC+P FGDQ +N R V V +G+ +E F +
Sbjct: 342 EAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSG 401
Query: 407 IETAIRRVTVEAEGQEMRERIMHXXXXXXXXXXXAGSSYQSLERLVDHI 455
+ + ++ + +G+++RE + GSS ++ LVD +
Sbjct: 402 LMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 117/452 (25%), Positives = 192/452 (42%), Gaps = 22/452 (4%)
Query: 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNY-------PHFSFNSI 68
V + P H P+L L + ++ +T + N + + P+ + ++
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNV 74
Query: 69 SESLWESEVSTENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQT 128
+ L + VS+ N + + F+ + + ++ + +TCL+TDA + F
Sbjct: 75 HDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKN--ITCLVTDAFFWFGAD 132
Query: 129 VADTLRLPRIVLRTXXXXXXXXXXXXXXXXEK-GYLAEQDSQLEKPVTELPPLRVKDIPI 187
+A+ + + L T EK G D + + P L+ D+P
Sbjct: 133 LAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKASDLPE 192
Query: 188 IVTHDTR-NFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPFHKY 246
V D F ++ + + + + NSF + L+ F + + +GPF+
Sbjct: 193 GVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKL-LLNVGPFN-- 249
Query: 247 CLAXXXXXXXXXXXCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWV 306
L C+ WLD+ SV+Y+SFGS+V E +A L PF+W
Sbjct: 250 -LTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWS 308
Query: 307 VRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESI 366
R + E LPKGFLE +G IV WAPQ E+L H +VG F TH+GWNS LE I
Sbjct: 309 FRG------DPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECI 362
Query: 367 CEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERRE-IETAIRRVTVEAEGQEMRE 425
GVPMI +P FGDQ +N V +G+ ++ +E I+ A+ +G MR+
Sbjct: 363 VGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSEKGGIMRQ 422
Query: 426 RIMHXXXXXXXXXXXAGSSYQSLERLVDHILS 457
+I+ G+S L+ + S
Sbjct: 423 KIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 120/472 (25%), Positives = 200/472 (42%), Gaps = 44/472 (9%)
Query: 9 VQQKKGRRVILFPLPLQGHINPMLQLAS-ILYSKGFSITIIHTNFNSPN----------P 57
+++ K V + P P GH+ P+++ A +++ G ++T + P+ P
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLP 60
Query: 58 SNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCL 117
S+ + + S E+ ISL ++ + + G T L
Sbjct: 61 SSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNP---ELRKVFDSFVEGGRLP---TAL 114
Query: 118 ITDAIWHFAQTVADTLRLPRIVLRTXXXXXXXXXXXXXXXXEKGYLAEQDSQLEKPVTEL 177
+ D A VA +P + E ++ + +L +P+ L
Sbjct: 115 VVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDET--VSCEFRELTEPLM-L 171
Query: 178 P---PLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHK--- 231
P P+ KD + ++ + + K G++ N+F +LE + L +
Sbjct: 172 PGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGL 231
Query: 232 DFPIPMFPIGPFHKYCLAXXXXXXXXXXXCISWLDKQAAKSVMYVSFGSIVVVNVTEFLE 291
D P P++P+GP + C+ WLD Q SV+YVSFGS + + E
Sbjct: 232 DKP-PVYPVGPL--VNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNE 288
Query: 292 IAWGLANSRVPFLWVVR-PGLVPGVEWLEP---------LPKGFLEMLDGRGHIVK-WAP 340
+A GLA+S FLWV+R P + + + LP GFLE RG ++ WAP
Sbjct: 289 LALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAP 348
Query: 341 QQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER 400
Q +VLAHP+ GGF TH GWNSTLES+ G+P+I P + +Q +NA +S R L
Sbjct: 349 QAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRA 408
Query: 401 K----FERREIETAIRRVTVEAEGQEMRERIMHXXXXXXXXXXXAGSSYQSL 448
R E+ ++ + EG+ +R ++ G+S ++L
Sbjct: 409 GDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 134/271 (49%), Gaps = 32/271 (11%)
Query: 203 VVSKTKACSGLIWNSFEDLEQTELTRL--HKDFPIPMFPIGPFHKYCLAXXXXXXXXXXX 260
+ + + G+I N+F DLEQ+ + L H + P++ +GP
Sbjct: 205 LAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHD 264
Query: 261 CI-SWLDKQAAKSVMYVSFGSI-VVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWL 318
I WLD+Q KSV+++ FGS+ V ++ EIA GL +S V FLW
Sbjct: 265 LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEK 317
Query: 319 EPLPKGFLE--MLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQP 376
+ P+GFLE L+G+G I WAPQ EVLAH A+GGF +H GWNS LES+ GVP++ P
Sbjct: 318 KVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP 377
Query: 377 CFGDQLVNARYVSHVWRVGLHLERKFER-------REIETAIRRVT-----VEAEGQEMR 424
+ +Q +NA + W VGL L + + EIE ++ + V + QEM+
Sbjct: 378 IYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMK 437
Query: 425 ERIMHXXXXXXXXXXXAGSSYQSLERLVDHI 455
E GSS S+ +L+D I
Sbjct: 438 E-------MSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 134/271 (49%), Gaps = 32/271 (11%)
Query: 203 VVSKTKACSGLIWNSFEDLEQTELTRL--HKDFPIPMFPIGPFHKYCLAXXXXXXXXXXX 260
+ + + G+I N+F DLEQ+ + L H + P++ +GP
Sbjct: 205 LAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHD 264
Query: 261 CI-SWLDKQAAKSVMYVSFGSI-VVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWL 318
I WLD+Q KSV+++ FGS+ V ++ EIA GL +S V FLW
Sbjct: 265 LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEK 317
Query: 319 EPLPKGFLE--MLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQP 376
+ P+GFLE L+G+G I WAPQ EVLAH A+GGF +H GWNS LES+ GVP++ P
Sbjct: 318 KVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP 377
Query: 377 CFGDQLVNARYVSHVWRVGLHLERKFER-------REIETAIRRVT-----VEAEGQEMR 424
+ +Q +NA + W VGL L + + EIE ++ + V + QEM+
Sbjct: 378 IYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMK 437
Query: 425 ERIMHXXXXXXXXXXXAGSSYQSLERLVDHI 455
E GSS S+ +L+D I
Sbjct: 438 E-------MSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 335 IVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRV 394
+ KW PQ ++L HP F TH G N E+I G+P + P F DQ N ++H
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN---IAHXKAR 128
Query: 395 GLHLERKFE---RREIETAIRRVTVEAEGQE---MRERIMH 429
G + F ++ A++RV + +E RI H
Sbjct: 129 GAAVRVDFNTXSSTDLLNALKRVINDPSYKENVXKLSRIQH 169
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 337 KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGL 396
+W PQ ++L + F TH G ST+E++ VPM+ P +Q +NA + + +G
Sbjct: 311 QWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELG-LGR 367
Query: 397 HLERK 401
H+ R
Sbjct: 368 HIPRD 372
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 338 WAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLH 397
W PQ +L + F TH G + E + PMI P DQ NA + GL
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ-----GLG 342
Query: 398 LERKFERREIETAIRRVTVEA 418
+ RK E + R T A
Sbjct: 343 VARKLATEEATADLLRETALA 363
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 318 LEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC 377
L+PLP+G L G+ + P +V+ H H G +TL + EGVP + P
Sbjct: 279 LQPLPEGVLAA--GQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVSVPV 328
Query: 378 FGDQLVNARYVSHVWRVGLHLERKFERREIETAI 411
+ +AR + G +E +E+ +E+ +
Sbjct: 329 IAEVWDSARLLHA---AGAGVEVPWEQAGVESVL 359
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 318 LEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC 377
L+PLP+G L G+ + P +V+ H H G +TL + EGVP + P
Sbjct: 278 LQPLPEGVLAA--GQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVSVPV 327
Query: 378 FGDQLVNARYVSHVWRVGLHLERKFERREIETAI 411
+ +AR + G +E +E+ +E+ +
Sbjct: 328 IAEVWDSARLLH---AAGAGVEVPWEQAGVESVL 358
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 13/121 (10%)
Query: 263 SWLD-KQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPL 321
+WL + A+ ++Y++ G+ V GLA L P L V L +
Sbjct: 233 AWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSL--DVSGLGEV 290
Query: 322 PKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQ 381
P + W PQ +L H V H G +TL ++ GVP + P GD
Sbjct: 291 PANV--------RLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDS 340
Query: 382 L 382
Sbjct: 341 F 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 337 KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQ 381
+W P VLAH TH + LE+ GVP++ P F +
Sbjct: 287 QWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,553,880
Number of Sequences: 62578
Number of extensions: 478354
Number of successful extensions: 1040
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 23
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)