Query 012678
Match_columns 458
No_of_seqs 139 out of 1228
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.6E-69 7.8E-74 518.0 47.1 441 13-458 6-451 (451)
2 PLN02555 limonoid glucosyltran 100.0 5E-66 1.1E-70 497.8 44.1 436 13-457 6-469 (480)
3 PLN02562 UDP-glycosyltransfera 100.0 8.8E-66 1.9E-70 496.3 43.8 429 11-456 3-448 (448)
4 PLN02173 UDP-glucosyl transfer 100.0 1.6E-65 3.6E-70 490.2 43.0 422 12-456 3-447 (449)
5 PLN02992 coniferyl-alcohol glu 100.0 2.8E-65 6.1E-70 491.1 42.2 431 13-458 4-470 (481)
6 PLN02207 UDP-glycosyltransfera 100.0 1.6E-64 3.4E-69 485.1 43.3 437 13-456 2-464 (468)
7 PLN02448 UDP-glycosyltransfera 100.0 1.7E-64 3.7E-69 491.4 42.5 432 9-457 5-457 (459)
8 PLN02210 UDP-glucosyl transfer 100.0 2.2E-64 4.8E-69 486.9 41.8 426 11-456 5-454 (456)
9 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.1E-64 4.6E-69 488.4 41.7 438 9-457 4-471 (477)
10 PLN02670 transferase, transfer 100.0 2.2E-64 4.8E-69 484.6 40.3 433 11-457 3-465 (472)
11 PLN03015 UDP-glucosyl transfer 100.0 1.8E-63 3.9E-68 475.7 43.0 432 13-455 2-466 (470)
12 PLN00164 glucosyltransferase; 100.0 1.5E-63 3.2E-68 484.3 42.7 435 13-457 2-473 (480)
13 PLN02152 indole-3-acetate beta 100.0 2.1E-63 4.5E-68 476.5 42.7 426 13-455 2-454 (455)
14 PLN02554 UDP-glycosyltransfera 100.0 2.3E-63 4.9E-68 485.1 42.6 432 14-457 2-478 (481)
15 PLN03004 UDP-glycosyltransfera 100.0 1.4E-63 3E-68 477.1 39.5 424 13-446 2-450 (451)
16 PLN02534 UDP-glycosyltransfera 100.0 3E-63 6.4E-68 479.1 41.2 440 12-457 6-486 (491)
17 PLN03007 UDP-glucosyltransfera 100.0 5.2E-63 1.1E-67 483.3 42.7 436 13-458 4-481 (482)
18 PLN02208 glycosyltransferase f 100.0 6E-63 1.3E-67 473.8 41.2 418 12-457 2-439 (442)
19 PLN02764 glycosyltransferase f 100.0 1.3E-62 2.9E-67 468.4 40.5 415 13-457 4-445 (453)
20 PLN02167 UDP-glycosyltransfera 100.0 4.7E-62 1E-66 475.1 42.3 439 13-457 2-472 (475)
21 PLN00414 glycosyltransferase f 100.0 4.8E-62 1E-66 468.1 40.3 418 12-457 2-440 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 9.2E-53 2E-57 411.5 23.0 406 13-451 19-461 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3.1E-55 6.8E-60 437.5 -13.3 387 15-437 1-426 (500)
24 cd03784 GT1_Gtf_like This fami 100.0 1.7E-44 3.7E-49 350.9 24.8 373 15-451 1-398 (401)
25 TIGR01426 MGT glycosyltransfer 100.0 2.2E-43 4.8E-48 341.3 29.9 374 20-456 1-391 (392)
26 COG1819 Glycosyl transferases, 100.0 4.7E-43 1E-47 334.2 16.5 392 14-456 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 3.7E-41 8.1E-46 336.4 23.5 396 14-436 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 7.6E-26 1.6E-30 213.4 27.2 336 16-457 3-351 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 2.5E-26 5.5E-31 216.3 22.3 305 15-414 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 6.2E-22 1.3E-26 184.3 28.7 308 15-417 1-324 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 9.4E-23 2E-27 191.3 21.3 306 16-417 1-314 (321)
32 PRK00726 murG undecaprenyldiph 99.9 4.4E-20 9.6E-25 176.7 26.1 343 15-456 2-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 2.3E-18 5.1E-23 164.5 25.3 320 16-426 1-330 (350)
34 TIGR01133 murG undecaprenyldip 99.8 7.7E-17 1.7E-21 153.9 27.4 311 15-425 1-326 (348)
35 COG4671 Predicted glycosyl tra 99.7 1.3E-16 2.8E-21 141.4 18.2 334 10-416 5-364 (400)
36 TIGR00215 lpxB lipid-A-disacch 99.7 1.6E-16 3.5E-21 152.3 19.8 348 15-453 6-384 (385)
37 PRK13609 diacylglycerol glucos 99.7 3.7E-16 8E-21 150.8 18.7 163 270-455 201-369 (380)
38 PRK00025 lpxB lipid-A-disaccha 99.6 1.9E-14 4E-19 139.1 21.0 107 341-455 255-375 (380)
39 TIGR03590 PseG pseudaminic aci 99.6 2.9E-14 6.2E-19 130.4 17.4 104 271-387 170-278 (279)
40 PRK13608 diacylglycerol glucos 99.6 1.4E-13 3.1E-18 132.8 22.1 165 269-456 200-370 (391)
41 TIGR03492 conserved hypothetic 99.6 4.3E-13 9.3E-18 128.8 24.0 351 22-453 4-394 (396)
42 PF04101 Glyco_tran_28_C: Glyc 99.6 2.3E-16 5E-21 133.4 -2.2 135 273-417 1-144 (167)
43 PLN02605 monogalactosyldiacylg 99.5 4.5E-12 9.8E-17 122.2 24.0 132 269-417 204-347 (382)
44 cd03814 GT1_like_2 This family 99.5 1.9E-10 4.2E-15 110.1 31.5 111 330-455 246-363 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.4 3E-10 6.4E-15 112.6 31.6 138 272-429 263-413 (465)
46 cd03818 GT1_ExpC_like This fam 99.3 5.6E-09 1.2E-13 101.5 31.9 338 16-417 1-366 (396)
47 PRK10307 putative glycosyl tra 99.3 4.9E-09 1.1E-13 102.5 31.4 164 271-457 228-407 (412)
48 PF03033 Glyco_transf_28: Glyc 99.3 2.1E-13 4.5E-18 111.7 -0.1 128 17-145 1-132 (139)
49 cd04962 GT1_like_5 This family 99.3 2.1E-09 4.6E-14 103.5 25.6 165 271-458 196-371 (371)
50 cd03794 GT1_wbuB_like This fam 99.3 2.7E-09 5.8E-14 102.9 26.0 330 16-417 1-365 (394)
51 cd03823 GT1_ExpE7_like This fa 99.3 9.2E-09 2E-13 98.2 29.4 130 270-417 189-329 (359)
52 cd03800 GT1_Sucrose_synthase T 99.3 4.1E-09 8.9E-14 102.5 26.9 326 25-417 21-368 (398)
53 cd03816 GT1_ALG1_like This fam 99.3 6.9E-09 1.5E-13 101.2 27.4 343 13-431 2-399 (415)
54 cd03817 GT1_UGDG_like This fam 99.2 9.3E-09 2E-13 98.6 27.9 94 330-432 258-359 (374)
55 COG3980 spsG Spore coat polysa 99.2 1.1E-09 2.5E-14 94.8 17.7 145 271-432 158-305 (318)
56 cd03801 GT1_YqgM_like This fam 99.2 3.2E-08 6.9E-13 94.5 28.8 336 25-455 14-373 (374)
57 cd03808 GT1_cap1E_like This fa 99.2 6.2E-08 1.3E-12 92.2 30.1 313 16-417 1-329 (359)
58 cd03825 GT1_wcfI_like This fam 99.1 4.2E-08 9E-13 94.2 26.0 114 331-458 244-365 (365)
59 TIGR03449 mycothiol_MshA UDP-N 99.1 9.9E-08 2.1E-12 93.1 28.5 110 331-456 283-400 (405)
60 cd03798 GT1_wlbH_like This fam 99.1 1.9E-07 4.2E-12 89.3 29.5 162 271-458 201-377 (377)
61 cd03820 GT1_amsD_like This fam 99.1 1.1E-07 2.4E-12 90.0 27.5 79 331-417 235-319 (348)
62 TIGR02468 sucrsPsyn_pln sucros 99.1 3.3E-07 7.2E-12 95.6 32.2 398 11-456 166-669 (1050)
63 cd03796 GT1_PIG-A_like This fa 99.1 1.3E-07 2.8E-12 92.0 27.1 111 331-457 250-367 (398)
64 cd03795 GT1_like_4 This family 99.1 1.3E-07 2.9E-12 90.4 25.8 142 271-430 190-346 (357)
65 PRK05749 3-deoxy-D-manno-octul 99.0 8.3E-08 1.8E-12 94.2 24.0 70 342-417 314-388 (425)
66 cd03822 GT1_ecORF704_like This 99.0 3.2E-07 6.9E-12 87.9 27.6 108 331-455 247-365 (366)
67 cd03805 GT1_ALG2_like This fam 99.0 2.8E-07 6.1E-12 89.5 27.1 91 330-429 279-377 (392)
68 PRK14089 ipid-A-disaccharide s 99.0 8.5E-08 1.8E-12 89.6 21.0 159 271-452 167-345 (347)
69 TIGR02472 sucr_P_syn_N sucrose 99.0 4.2E-07 9.1E-12 89.5 27.0 112 330-455 316-438 (439)
70 cd03821 GT1_Bme6_like This fam 99.0 1.1E-06 2.3E-11 84.3 28.9 78 330-417 261-345 (375)
71 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 1.1E-08 2.4E-13 98.3 14.8 134 270-417 197-337 (363)
72 cd03819 GT1_WavL_like This fam 99.0 5.4E-07 1.2E-11 86.1 26.2 149 270-432 183-347 (355)
73 cd05844 GT1_like_7 Glycosyltra 99.0 4E-07 8.6E-12 87.5 25.0 80 330-417 244-336 (367)
74 PF04007 DUF354: Protein of un 98.9 8.4E-08 1.8E-12 88.9 18.5 301 15-415 1-308 (335)
75 cd03802 GT1_AviGT4_like This f 98.9 5.2E-07 1.1E-11 85.5 23.3 152 274-455 173-334 (335)
76 PLN02275 transferase, transfer 98.9 1.3E-06 2.7E-11 84.1 25.8 320 13-415 3-371 (371)
77 TIGR00236 wecB UDP-N-acetylglu 98.8 8.2E-08 1.8E-12 92.2 15.5 136 271-428 197-342 (365)
78 cd03799 GT1_amsK_like This is 98.8 1.8E-06 4E-11 82.4 24.6 81 330-418 235-328 (355)
79 cd03811 GT1_WabH_like This fam 98.8 2E-06 4.4E-11 81.4 24.2 131 270-417 187-332 (353)
80 cd04951 GT1_WbdM_like This fam 98.8 1.7E-06 3.8E-11 82.7 23.5 158 270-455 186-358 (360)
81 cd04955 GT1_like_6 This family 98.8 2.6E-06 5.7E-11 81.6 24.7 155 275-455 196-362 (363)
82 PRK09922 UDP-D-galactose:(gluc 98.8 7.9E-07 1.7E-11 85.2 20.8 148 272-432 180-342 (359)
83 PRK15427 colanic acid biosynth 98.8 6.7E-06 1.5E-10 79.9 26.7 166 271-458 221-406 (406)
84 PLN02846 digalactosyldiacylgly 98.8 2E-06 4.3E-11 83.4 22.5 121 274-417 230-363 (462)
85 TIGR02149 glgA_Coryne glycogen 98.8 3.4E-06 7.4E-11 81.8 24.4 165 271-457 200-386 (388)
86 TIGR02470 sucr_synth sucrose s 98.8 4.2E-05 9.1E-10 78.5 32.3 79 331-415 619-707 (784)
87 cd03807 GT1_WbnK_like This fam 98.7 1.9E-05 4.2E-10 75.2 28.1 109 331-455 251-364 (365)
88 TIGR03087 stp1 sugar transfera 98.7 4.2E-06 9.1E-11 81.4 22.9 109 331-456 280-395 (397)
89 TIGR03088 stp2 sugar transfera 98.7 6.7E-06 1.4E-10 79.3 24.1 113 331-457 255-372 (374)
90 PLN00142 sucrose synthase 98.7 9.6E-06 2.1E-10 83.1 25.4 57 353-415 670-730 (815)
91 PRK01021 lpxB lipid-A-disaccha 98.7 2E-05 4.2E-10 77.8 25.3 197 234-455 380-603 (608)
92 cd03809 GT1_mtfB_like This fam 98.6 1.1E-05 2.3E-10 77.2 21.0 88 329-429 251-345 (365)
93 cd03806 GT1_ALG11_like This fa 98.6 1E-05 2.2E-10 79.1 20.8 80 330-418 304-393 (419)
94 PRK15179 Vi polysaccharide bio 98.5 0.00012 2.5E-09 75.1 27.5 113 330-456 573-692 (694)
95 cd03812 GT1_CapH_like This fam 98.5 2.8E-05 6.1E-10 74.3 22.0 78 331-417 249-331 (358)
96 cd03804 GT1_wbaZ_like This fam 98.5 1.1E-05 2.4E-10 77.0 18.5 124 275-418 198-327 (351)
97 PF02684 LpxB: Lipid-A-disacch 98.5 3.3E-05 7.2E-10 72.8 20.5 195 234-447 152-367 (373)
98 cd03792 GT1_Trehalose_phosphor 98.4 9E-05 1.9E-09 71.4 23.6 111 331-458 252-372 (372)
99 TIGR02095 glgA glycogen/starch 98.4 6.4E-05 1.4E-09 74.9 22.5 165 271-458 290-473 (473)
100 KOG3349 Predicted glycosyltran 98.4 1.2E-06 2.6E-11 68.5 7.7 118 271-398 3-132 (170)
101 COG0763 LpxB Lipid A disacchar 98.4 2.2E-05 4.8E-10 72.4 16.3 201 234-456 155-380 (381)
102 PRK00654 glgA glycogen synthas 98.4 4.2E-05 9.1E-10 75.9 19.6 167 271-457 281-462 (466)
103 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 6.3E-05 1.4E-09 71.9 19.6 131 270-416 200-338 (365)
104 COG1519 KdtA 3-deoxy-D-manno-o 98.3 0.00055 1.2E-08 64.1 24.8 331 17-457 51-417 (419)
105 PF02350 Epimerase_2: UDP-N-ac 98.3 1.1E-05 2.5E-10 76.1 13.7 140 269-429 178-327 (346)
106 PLN02949 transferase, transfer 98.3 0.00029 6.3E-09 69.4 23.8 112 330-457 334-456 (463)
107 PRK10125 putative glycosyl tra 98.2 0.00058 1.3E-08 66.3 23.7 154 274-458 243-405 (405)
108 TIGR02918 accessory Sec system 98.2 0.00022 4.8E-09 70.9 20.9 163 271-458 318-500 (500)
109 cd04950 GT1_like_1 Glycosyltra 98.2 0.0013 2.8E-08 63.4 25.5 108 331-457 254-371 (373)
110 cd03791 GT1_Glycogen_synthase_ 98.2 0.00022 4.8E-09 71.2 20.6 166 271-456 295-475 (476)
111 PLN02316 synthase/transferase 98.1 0.0014 3.1E-08 69.3 25.2 117 331-456 900-1032(1036)
112 PRK15484 lipopolysaccharide 1, 98.1 0.00013 2.9E-09 70.4 15.2 115 329-457 255-377 (380)
113 PLN02501 digalactosyldiacylgly 98.0 0.00049 1.1E-08 68.9 18.4 74 333-417 603-681 (794)
114 PF13844 Glyco_transf_41: Glyc 98.0 0.00018 3.9E-09 69.4 14.5 136 269-417 282-430 (468)
115 COG0381 WecB UDP-N-acetylgluco 98.0 0.00068 1.5E-08 63.0 17.4 157 270-456 203-369 (383)
116 cd03813 GT1_like_3 This family 98.0 0.0015 3.3E-08 65.1 21.5 81 330-417 353-442 (475)
117 cd04946 GT1_AmsK_like This fam 97.9 0.00012 2.6E-09 71.4 12.5 166 270-452 228-406 (407)
118 cd04949 GT1_gtfA_like This fam 97.9 0.00041 8.9E-09 66.8 16.0 99 331-434 261-363 (372)
119 COG5017 Uncharacterized conser 97.9 9.6E-05 2.1E-09 57.0 7.9 124 274-416 2-141 (161)
120 PF00534 Glycos_transf_1: Glyc 97.8 7.5E-05 1.6E-09 63.2 6.9 134 269-417 12-158 (172)
121 PRK15490 Vi polysaccharide bio 97.6 0.089 1.9E-06 52.3 28.0 114 330-457 454-575 (578)
122 PRK10017 colanic acid biosynth 97.5 0.099 2.1E-06 50.9 28.7 177 263-455 226-422 (426)
123 cd01635 Glycosyltransferase_GT 97.5 0.0078 1.7E-07 52.9 16.9 48 331-380 161-216 (229)
124 COG1817 Uncharacterized protei 97.5 0.065 1.4E-06 48.3 22.2 115 15-146 1-116 (346)
125 TIGR02193 heptsyl_trn_I lipopo 97.4 0.011 2.4E-07 55.5 17.2 131 270-415 178-319 (319)
126 PRK09814 beta-1,6-galactofuran 97.3 0.0011 2.4E-08 62.7 9.4 109 331-453 207-331 (333)
127 PF13692 Glyco_trans_1_4: Glyc 97.3 0.00043 9.3E-09 55.8 5.6 80 330-417 52-135 (135)
128 KOG4626 O-linked N-acetylgluco 97.2 0.0042 9.1E-08 60.6 11.7 137 269-417 756-904 (966)
129 PF06722 DUF1205: Protein of u 97.2 0.00056 1.2E-08 51.0 4.1 64 259-325 28-96 (97)
130 PRK10916 ADP-heptose:LPS hepto 96.9 0.1 2.2E-06 49.7 18.5 103 15-139 1-106 (348)
131 PRK10422 lipopolysaccharide co 96.7 0.2 4.4E-06 47.7 18.7 108 13-140 4-114 (352)
132 PF13477 Glyco_trans_4_2: Glyc 96.7 0.024 5.2E-07 45.8 10.5 104 16-143 1-108 (139)
133 COG0859 RfaF ADP-heptose:LPS h 96.5 0.29 6.2E-06 46.3 18.1 108 14-142 1-110 (334)
134 TIGR02201 heptsyl_trn_III lipo 96.5 0.25 5.5E-06 46.9 17.4 106 16-140 1-109 (344)
135 PHA01633 putative glycosyl tra 96.5 0.012 2.5E-07 55.1 8.0 83 331-417 201-307 (335)
136 TIGR02195 heptsyl_trn_II lipop 96.4 0.16 3.4E-06 48.1 15.9 102 16-139 1-105 (334)
137 COG3914 Spy Predicted O-linked 96.4 0.061 1.3E-06 52.5 12.2 105 269-383 427-543 (620)
138 PRK14098 glycogen synthase; Pr 96.3 0.037 8E-07 55.2 11.0 165 271-457 306-485 (489)
139 PHA01630 putative group 1 glyc 96.3 0.14 3.1E-06 48.2 14.4 113 337-457 196-330 (331)
140 cd03789 GT1_LPS_heptosyltransf 96.2 0.17 3.7E-06 46.4 14.4 102 16-139 1-105 (279)
141 PF12000 Glyco_trans_4_3: Gkyc 96.1 0.056 1.2E-06 45.0 9.4 96 40-143 1-97 (171)
142 PRK10964 ADP-heptose:LPS hepto 96.0 0.23 4.9E-06 46.8 14.5 132 271-416 178-321 (322)
143 PF13524 Glyco_trans_1_2: Glyc 95.9 0.052 1.1E-06 40.2 7.6 82 356-452 9-91 (92)
144 PF06258 Mito_fiss_Elm1: Mitoc 95.7 0.35 7.5E-06 45.0 13.7 40 339-379 220-259 (311)
145 PF01975 SurE: Survival protei 95.5 0.19 4.2E-06 43.1 10.5 113 15-143 1-134 (196)
146 PF13579 Glyco_trans_4_4: Glyc 95.5 0.034 7.3E-07 45.8 5.8 97 30-143 6-105 (160)
147 PRK13932 stationary phase surv 95.2 0.59 1.3E-05 41.8 12.8 115 11-143 2-134 (257)
148 PLN02939 transferase, transfer 94.2 1 2.3E-05 47.8 13.6 82 331-416 837-930 (977)
149 PF13439 Glyco_transf_4: Glyco 93.9 0.41 8.9E-06 39.9 8.8 29 25-53 12-40 (177)
150 PF08660 Alg14: Oligosaccharid 92.9 0.27 5.7E-06 41.2 5.7 112 18-143 2-130 (170)
151 TIGR00087 surE 5'/3'-nucleotid 92.1 3.9 8.4E-05 36.5 12.3 110 15-143 1-129 (244)
152 COG0496 SurE Predicted acid ph 92.0 1.2 2.6E-05 39.5 8.7 109 15-143 1-126 (252)
153 TIGR02400 trehalose_OtsA alpha 92.0 1.2 2.7E-05 44.0 9.9 104 337-457 342-456 (456)
154 PRK13933 stationary phase surv 91.3 5.8 0.00012 35.6 12.5 39 15-55 1-39 (253)
155 PRK13934 stationary phase surv 91.3 5.4 0.00012 35.9 12.3 39 15-55 1-39 (266)
156 PRK13935 stationary phase surv 90.6 7.2 0.00016 34.9 12.3 39 15-55 1-39 (253)
157 PLN03063 alpha,alpha-trehalose 90.5 2.1 4.5E-05 45.5 10.5 97 343-456 371-476 (797)
158 PRK00346 surE 5'(3')-nucleotid 90.3 8.1 0.00017 34.6 12.4 108 15-143 1-125 (250)
159 COG3660 Predicted nucleoside-d 90.0 14 0.0003 33.0 15.0 76 292-375 189-271 (329)
160 cd03788 GT1_TPS Trehalose-6-Ph 89.9 3.2 6.9E-05 41.2 10.7 103 336-455 346-459 (460)
161 PRK14099 glycogen synthase; Pr 89.8 3.5 7.6E-05 41.2 11.0 111 335-457 355-478 (485)
162 PF02951 GSH-S_N: Prokaryotic 89.7 0.56 1.2E-05 36.5 4.2 37 15-51 1-40 (119)
163 COG4370 Uncharacterized protei 88.4 20 0.00043 32.8 21.2 85 337-428 301-387 (412)
164 PRK02261 methylaspartate mutas 87.6 1.3 2.9E-05 35.5 5.2 40 12-51 1-40 (137)
165 TIGR03713 acc_sec_asp1 accesso 87.5 1.3 2.9E-05 44.4 6.2 91 332-435 410-507 (519)
166 PRK05986 cob(I)alamin adenolsy 87.4 7.5 0.00016 33.1 9.7 101 12-124 20-126 (191)
167 KOG2941 Beta-1,4-mannosyltrans 87.0 26 0.00057 32.7 26.5 63 8-70 6-70 (444)
168 TIGR02919 accessory Sec system 86.6 12 0.00027 36.7 12.2 94 331-434 328-426 (438)
169 PRK13931 stationary phase surv 86.1 17 0.00038 32.7 11.9 109 15-142 1-129 (261)
170 COG2910 Putative NADH-flavin r 85.9 0.94 2E-05 37.8 3.5 33 15-51 1-33 (211)
171 COG0438 RfaG Glycosyltransfera 85.0 5.5 0.00012 36.9 9.0 79 331-417 257-342 (381)
172 PF05159 Capsule_synth: Capsul 83.9 5.3 0.00012 36.4 8.0 40 335-377 187-226 (269)
173 COG1618 Predicted nucleotide k 83.8 7.2 0.00016 32.1 7.5 58 12-70 3-60 (179)
174 PF02441 Flavoprotein: Flavopr 83.7 1.5 3.3E-05 34.8 3.8 37 15-52 1-37 (129)
175 cd02067 B12-binding B12 bindin 82.5 2.1 4.5E-05 33.4 4.1 36 16-51 1-36 (119)
176 TIGR00708 cobA cob(I)alamin ad 82.2 9.7 0.00021 31.9 8.0 98 13-123 4-107 (173)
177 cd03793 GT1_Glycogen_synthase_ 81.6 3.8 8.2E-05 41.2 6.3 75 340-417 467-552 (590)
178 cd00561 CobA_CobO_BtuR ATP:cor 80.9 16 0.00035 30.1 8.8 98 15-124 3-106 (159)
179 TIGR00715 precor6x_red precorr 79.5 20 0.00044 32.3 9.8 32 15-51 1-32 (256)
180 PRK02797 4-alpha-L-fucosyltran 78.2 16 0.00035 33.6 8.6 135 274-415 147-292 (322)
181 PF04464 Glyphos_transf: CDP-G 76.9 1.9 4E-05 41.5 2.6 109 332-456 253-368 (369)
182 PRK14501 putative bifunctional 75.9 19 0.00041 38.2 9.9 110 335-457 346-462 (726)
183 PRK08305 spoVFB dipicolinate s 75.1 4.8 0.0001 34.4 4.3 40 13-52 4-43 (196)
184 PF01075 Glyco_transf_9: Glyco 74.5 6.3 0.00014 35.2 5.2 98 270-375 104-208 (247)
185 PF12146 Hydrolase_4: Putative 71.3 8.3 0.00018 27.5 4.2 35 15-49 16-50 (79)
186 COG1703 ArgK Putative periplas 71.1 53 0.0012 30.2 9.9 43 12-54 49-91 (323)
187 PF02310 B12-binding: B12 bind 70.3 9.4 0.0002 29.6 4.8 37 15-51 1-37 (121)
188 COG0003 ArsA Predicted ATPase 70.2 36 0.00079 31.8 9.1 37 15-51 2-39 (322)
189 COG2894 MinD Septum formation 68.1 20 0.00043 31.2 6.3 38 16-53 3-42 (272)
190 KOG1387 Glycosyltransferase [C 67.5 1.1E+02 0.0024 28.8 17.5 277 100-435 142-444 (465)
191 PRK11519 tyrosine kinase; Prov 67.1 1.4E+02 0.003 31.8 13.9 41 12-52 523-565 (719)
192 PRK14099 glycogen synthase; Pr 67.0 9.4 0.0002 38.2 5.0 40 13-52 2-47 (485)
193 KOG0853 Glycosyltransferase [C 66.2 3.6 7.9E-05 40.4 1.8 60 361-428 381-441 (495)
194 cd02070 corrinoid_protein_B12- 65.9 13 0.00027 32.2 5.0 39 13-51 81-119 (201)
195 TIGR02370 pyl_corrinoid methyl 65.9 13 0.00028 32.0 5.1 39 13-51 83-121 (197)
196 TIGR02015 BchY chlorophyllide 65.5 56 0.0012 32.0 9.9 95 15-141 286-380 (422)
197 PF00731 AIRC: AIR carboxylase 64.8 38 0.00082 27.6 7.1 136 273-436 2-148 (150)
198 COG2861 Uncharacterized protei 64.4 74 0.0016 28.1 9.1 112 12-139 52-178 (250)
199 PF02606 LpxK: Tetraacyldisacc 64.2 23 0.00051 33.2 6.7 33 20-52 43-75 (326)
200 PF07429 Glyco_transf_56: 4-al 63.4 55 0.0012 30.8 8.7 82 331-417 245-333 (360)
201 cd07038 TPP_PYR_PDC_IPDC_like 63.0 15 0.00031 30.5 4.7 26 353-378 63-94 (162)
202 COG2185 Sbm Methylmalonyl-CoA 62.9 14 0.0003 29.7 4.2 39 12-50 10-48 (143)
203 TIGR02852 spore_dpaB dipicolin 62.7 10 0.00023 32.2 3.7 36 16-51 2-37 (187)
204 cd02071 MM_CoA_mut_B12_BD meth 62.7 13 0.00029 29.1 4.2 36 16-51 1-36 (122)
205 COG2109 BtuR ATP:corrinoid ade 62.2 99 0.0022 26.3 9.4 100 13-124 27-133 (198)
206 TIGR00682 lpxK tetraacyldisacc 61.4 36 0.00077 31.7 7.3 34 20-53 36-69 (311)
207 PF02572 CobA_CobO_BtuR: ATP:c 60.4 37 0.00079 28.5 6.5 100 13-124 2-107 (172)
208 cd02069 methionine_synthase_B1 59.3 19 0.00042 31.4 5.0 39 13-51 87-125 (213)
209 cd07039 TPP_PYR_POX Pyrimidine 58.5 1.1E+02 0.0023 25.4 9.2 29 347-377 63-97 (164)
210 TIGR02398 gluc_glyc_Psyn gluco 58.3 87 0.0019 31.3 9.8 107 334-457 365-482 (487)
211 cd02037 MRP-like MRP (Multiple 58.1 45 0.00097 27.7 6.9 33 19-51 5-37 (169)
212 PRK13789 phosphoribosylamine-- 58.1 38 0.00082 33.2 7.3 36 13-53 3-38 (426)
213 CHL00072 chlL photochlorophyll 58.0 20 0.00042 33.1 5.1 37 15-51 1-37 (290)
214 COG1663 LpxK Tetraacyldisaccha 57.4 42 0.00092 31.3 6.9 32 20-51 55-86 (336)
215 cd01980 Chlide_reductase_Y Chl 56.9 1.2E+02 0.0026 29.7 10.5 27 112-141 349-375 (416)
216 PRK07313 phosphopantothenoylcy 56.4 15 0.00033 31.1 3.7 38 15-53 2-39 (182)
217 TIGR01281 DPOR_bchL light-inde 56.2 20 0.00043 32.5 4.8 37 15-51 1-37 (268)
218 COG4394 Uncharacterized protei 56.2 1.6E+02 0.0035 26.9 12.9 118 334-457 241-367 (370)
219 PRK05920 aromatic acid decarbo 56.1 21 0.00045 30.9 4.5 37 15-52 4-40 (204)
220 PLN02939 transferase, transfer 56.0 23 0.0005 38.2 5.6 41 12-52 479-525 (977)
221 cd02032 Bchl_like This family 56.0 20 0.00043 32.5 4.7 37 15-51 1-37 (267)
222 PRK06732 phosphopantothenate-- 55.9 18 0.00038 32.1 4.2 21 31-51 29-49 (229)
223 PLN02470 acetolactate synthase 55.5 14 0.0003 38.1 4.0 92 277-376 2-109 (585)
224 PF04127 DFP: DNA / pantothena 54.9 14 0.0003 31.5 3.2 21 31-51 32-52 (185)
225 PRK09620 hypothetical protein; 54.2 64 0.0014 28.5 7.4 21 31-51 32-52 (229)
226 KOG1250 Threonine/serine dehyd 53.2 2.2E+02 0.0047 27.5 11.9 60 353-418 248-317 (457)
227 TIGR02113 coaC_strep phosphopa 52.8 22 0.00047 30.0 4.1 37 16-53 2-38 (177)
228 PF02374 ArsA_ATPase: Anion-tr 52.7 21 0.00045 33.2 4.3 39 15-53 1-40 (305)
229 PRK04885 ppnK inorganic polyph 51.0 20 0.00043 32.5 3.8 52 348-417 36-93 (265)
230 PF10093 DUF2331: Uncharacteri 50.6 2.4E+02 0.0051 27.1 11.5 165 280-457 188-374 (374)
231 PRK02155 ppnK NAD(+)/NADH kina 50.6 27 0.00058 32.2 4.6 54 346-417 62-119 (291)
232 PRK06849 hypothetical protein; 50.5 33 0.00071 33.2 5.5 35 13-51 3-37 (389)
233 PF01210 NAD_Gly3P_dh_N: NAD-d 50.4 12 0.00027 30.7 2.3 31 16-51 1-31 (157)
234 PRK00207 sulfur transfer compl 50.3 38 0.00083 26.8 4.9 36 15-50 1-40 (128)
235 PF06925 MGDG_synth: Monogalac 50.1 40 0.00088 28.0 5.4 23 27-49 1-24 (169)
236 PF09314 DUF1972: Domain of un 49.9 34 0.00073 29.1 4.8 39 31-69 23-62 (185)
237 PRK13982 bifunctional SbtC-lik 49.8 45 0.00096 33.1 6.2 40 13-52 255-306 (475)
238 PF06506 PrpR_N: Propionate ca 49.7 12 0.00025 31.6 2.0 70 347-417 32-124 (176)
239 cd07035 TPP_PYR_POX_like Pyrim 49.5 83 0.0018 25.5 7.1 30 347-378 59-94 (155)
240 PRK01175 phosphoribosylformylg 49.4 2E+02 0.0044 26.0 11.6 57 13-72 2-58 (261)
241 cd07025 Peptidase_S66 LD-Carbo 49.2 36 0.00079 31.2 5.3 74 284-378 46-121 (282)
242 PF08323 Glyco_transf_5: Starc 49.1 15 0.00032 33.0 2.7 24 29-52 20-43 (245)
243 TIGR00421 ubiX_pad polyprenyl 48.9 19 0.0004 30.6 3.1 36 16-52 1-36 (181)
244 PRK05632 phosphate acetyltrans 48.4 2.3E+02 0.0049 30.0 11.5 102 16-144 4-116 (684)
245 PRK12446 undecaprenyldiphospho 47.9 38 0.00082 32.3 5.4 96 272-375 3-120 (352)
246 PRK14098 glycogen synthase; Pr 47.5 33 0.00072 34.4 5.1 38 15-52 6-49 (489)
247 PRK06718 precorrin-2 dehydroge 47.4 95 0.0021 26.8 7.3 141 270-436 10-164 (202)
248 PRK06249 2-dehydropantoate 2-r 47.1 25 0.00055 32.8 4.0 35 12-51 3-37 (313)
249 PRK14077 pnk inorganic polypho 46.8 29 0.00063 31.9 4.2 56 344-417 61-120 (287)
250 TIGR01007 eps_fam capsular exo 46.5 41 0.00089 28.9 5.0 39 13-51 15-55 (204)
251 TIGR01501 MthylAspMutase methy 46.5 44 0.00096 26.7 4.7 38 14-51 1-38 (134)
252 PRK01911 ppnK inorganic polyph 45.8 32 0.00068 31.8 4.3 57 343-417 60-120 (292)
253 COG0297 GlgA Glycogen synthase 45.8 55 0.0012 32.7 6.2 118 327-456 345-476 (487)
254 PRK06321 replicative DNA helic 45.5 95 0.0021 30.9 7.9 36 17-52 229-265 (472)
255 PRK06029 3-octaprenyl-4-hydrox 44.9 31 0.00068 29.3 3.8 38 15-53 2-40 (185)
256 PRK12475 thiamine/molybdopteri 44.9 91 0.002 29.5 7.3 32 14-50 24-56 (338)
257 PRK04946 hypothetical protein; 44.6 24 0.00051 29.9 3.0 57 289-363 112-169 (181)
258 PRK05647 purN phosphoribosylgl 44.4 1.6E+02 0.0035 25.4 8.2 34 15-51 2-37 (200)
259 PRK02649 ppnK inorganic polyph 43.4 35 0.00076 31.7 4.2 54 346-417 67-124 (305)
260 COG1484 DnaC DNA replication p 43.3 40 0.00086 30.4 4.5 39 13-51 104-142 (254)
261 cd01141 TroA_d Periplasmic bin 42.9 37 0.0008 28.7 4.1 38 100-142 61-100 (186)
262 PF01372 Melittin: Melittin; 42.3 5.7 0.00012 20.7 -0.6 17 358-374 1-17 (26)
263 PRK03378 ppnK inorganic polyph 41.4 39 0.00085 31.2 4.2 56 344-417 60-119 (292)
264 COG0299 PurN Folate-dependent 41.4 95 0.0021 26.5 6.0 119 286-431 65-185 (200)
265 PRK04539 ppnK inorganic polyph 41.4 36 0.00078 31.4 4.0 56 344-417 65-124 (296)
266 PRK05579 bifunctional phosphop 41.4 42 0.00091 32.6 4.6 41 12-53 4-44 (399)
267 TIGR00640 acid_CoA_mut_C methy 41.3 59 0.0013 25.9 4.7 39 13-51 1-39 (132)
268 PF06180 CbiK: Cobalt chelatas 41.2 42 0.00091 30.3 4.3 39 271-309 1-42 (262)
269 TIGR02700 flavo_MJ0208 archaeo 41.0 40 0.00087 29.9 4.1 38 16-53 1-40 (234)
270 PRK05784 phosphoribosylamine-- 40.8 1.8E+02 0.0039 29.2 9.0 31 15-50 1-33 (486)
271 PF05225 HTH_psq: helix-turn-h 40.8 35 0.00075 21.2 2.6 27 403-431 1-27 (45)
272 PRK06522 2-dehydropantoate 2-r 40.5 33 0.00072 31.7 3.8 31 15-50 1-31 (304)
273 COG0052 RpsB Ribosomal protein 40.5 64 0.0014 28.6 5.1 32 114-145 157-190 (252)
274 PRK13869 plasmid-partitioning 40.3 49 0.0011 32.2 4.9 39 13-51 119-159 (405)
275 cd02034 CooC The accessory pro 40.3 69 0.0015 24.8 4.9 37 16-52 1-37 (116)
276 PF02702 KdpD: Osmosensitive K 40.2 49 0.0011 28.5 4.2 39 13-51 4-42 (211)
277 PRK13234 nifH nitrogenase redu 40.1 57 0.0012 30.1 5.2 39 13-51 2-41 (295)
278 TIGR00347 bioD dethiobiotin sy 40.0 2.1E+02 0.0045 23.4 8.3 28 21-48 5-32 (166)
279 cd03114 ArgK-like The function 40.0 2E+02 0.0044 23.3 8.6 35 17-51 2-36 (148)
280 COG0801 FolK 7,8-dihydro-6-hyd 39.8 62 0.0013 26.7 4.6 29 273-301 3-31 (160)
281 PF03853 YjeF_N: YjeF-related 39.8 59 0.0013 27.1 4.8 38 12-50 23-60 (169)
282 TIGR02699 archaeo_AfpA archaeo 39.7 41 0.00089 28.2 3.7 36 17-53 2-39 (174)
283 PRK00048 dihydrodipicolinate r 39.5 1.9E+02 0.0042 26.0 8.4 56 341-400 54-115 (257)
284 COG0541 Ffh Signal recognition 39.5 1.3E+02 0.0028 29.3 7.3 43 12-54 98-140 (451)
285 TIGR00639 PurN phosphoribosylg 39.4 2.4E+02 0.0053 24.0 8.5 34 15-51 1-36 (190)
286 TIGR01425 SRP54_euk signal rec 39.3 1.5E+02 0.0033 29.1 8.0 39 15-53 101-139 (429)
287 TIGR00521 coaBC_dfp phosphopan 39.1 43 0.00094 32.4 4.3 39 14-53 3-41 (390)
288 cd01974 Nitrogenase_MoFe_beta 39.1 3.9E+02 0.0085 26.3 11.1 27 112-141 376-402 (435)
289 PRK14619 NAD(P)H-dependent gly 38.9 39 0.00085 31.4 3.9 34 13-51 3-36 (308)
290 TIGR01380 glut_syn glutathione 38.6 40 0.00087 31.5 3.9 37 15-51 1-40 (312)
291 TIGR01470 cysG_Nterm siroheme 38.6 2.5E+02 0.0054 24.3 8.6 144 270-436 9-164 (205)
292 TIGR03018 pepcterm_TyrKin exop 38.4 75 0.0016 27.4 5.4 41 11-51 31-74 (207)
293 COG2084 MmsB 3-hydroxyisobutyr 38.1 46 0.001 30.5 4.0 32 15-51 1-32 (286)
294 PLN00016 RNA-binding protein; 37.9 42 0.00091 32.3 4.1 38 14-51 52-89 (378)
295 cd07062 Peptidase_S66_mccF_lik 37.7 62 0.0014 30.1 5.0 73 284-377 50-124 (308)
296 COG2733 Predicted membrane pro 37.7 98 0.0021 29.5 6.1 42 370-413 64-107 (415)
297 PF09001 DUF1890: Domain of un 37.6 40 0.00088 26.8 3.1 26 26-51 11-36 (139)
298 COG2210 Peroxiredoxin family p 37.5 74 0.0016 25.4 4.5 36 15-50 3-39 (137)
299 PF07015 VirC1: VirC1 protein; 37.5 86 0.0019 27.7 5.4 35 22-56 10-44 (231)
300 COG2327 WcaK Polysaccharide py 37.4 2.5E+02 0.0053 27.1 8.8 76 342-426 280-357 (385)
301 PRK07313 phosphopantothenoylcy 36.8 2.6E+02 0.0057 23.7 9.1 47 369-416 113-179 (182)
302 PRK10867 signal recognition pa 36.7 1.8E+02 0.0039 28.6 8.1 39 15-53 101-140 (433)
303 PF03721 UDPG_MGDP_dh_N: UDP-g 36.6 58 0.0012 27.7 4.2 32 15-51 1-32 (185)
304 PF13450 NAD_binding_8: NAD(P) 36.5 46 0.001 22.8 3.0 21 31-51 8-28 (68)
305 COG3245 CycB Cytochrome c5 [En 36.4 42 0.00092 25.7 2.9 49 366-416 60-123 (126)
306 PF00551 Formyl_trans_N: Formy 36.2 87 0.0019 26.4 5.3 33 15-50 1-35 (181)
307 PRK03094 hypothetical protein; 36.1 35 0.00075 24.4 2.3 20 31-50 10-29 (80)
308 PRK03372 ppnK inorganic polyph 35.9 46 0.001 30.9 3.8 55 345-417 70-128 (306)
309 PRK02231 ppnK inorganic polyph 35.9 36 0.00079 31.0 3.1 57 342-416 37-97 (272)
310 PRK08155 acetolactate synthase 35.9 43 0.00092 34.3 3.9 89 278-376 4-109 (564)
311 PRK01077 cobyrinic acid a,c-di 35.7 1.3E+02 0.0028 29.8 7.2 36 15-50 3-40 (451)
312 PRK12342 hypothetical protein; 35.5 66 0.0014 29.0 4.6 31 113-143 109-145 (254)
313 PRK03708 ppnK inorganic polyph 35.4 41 0.0009 30.7 3.4 53 347-417 57-112 (277)
314 PF06418 CTP_synth_N: CTP synt 35.2 49 0.0011 29.7 3.6 37 15-51 1-40 (276)
315 cd01965 Nitrogenase_MoFe_beta_ 35.2 1.1E+02 0.0023 30.1 6.5 26 112-140 370-395 (428)
316 PRK12921 2-dehydropantoate 2-r 35.1 44 0.00095 30.9 3.6 31 15-50 1-31 (305)
317 PRK08125 bifunctional UDP-gluc 34.9 1.4E+02 0.0031 31.2 7.7 31 15-50 1-31 (660)
318 PF06564 YhjQ: YhjQ protein; 34.9 66 0.0014 28.7 4.4 36 15-50 1-38 (243)
319 PRK11914 diacylglycerol kinase 34.6 69 0.0015 29.7 4.8 84 271-378 10-97 (306)
320 PRK09841 cryptic autophosphory 34.4 2.3E+02 0.0049 30.2 9.1 41 12-52 528-570 (726)
321 COG0504 PyrG CTP synthase (UTP 34.3 80 0.0017 31.1 5.1 37 15-51 1-40 (533)
322 PRK07414 cob(I)yrinic acid a,c 34.2 2.9E+02 0.0062 23.4 10.0 59 12-70 19-83 (178)
323 cd02065 B12-binding_like B12 b 34.0 70 0.0015 24.7 4.2 34 17-50 2-35 (125)
324 COG0569 TrkA K+ transport syst 34.0 51 0.0011 29.1 3.6 32 15-51 1-32 (225)
325 PF13460 NAD_binding_10: NADH( 33.8 49 0.0011 27.7 3.4 28 22-51 4-31 (183)
326 PF01497 Peripla_BP_2: Peripla 33.7 60 0.0013 28.5 4.2 40 100-144 52-93 (238)
327 COG1327 Predicted transcriptio 33.6 65 0.0014 26.0 3.7 57 357-415 35-92 (156)
328 PRK09165 replicative DNA helic 33.5 1.8E+02 0.004 29.2 7.8 36 17-52 220-270 (497)
329 PRK06935 2-deoxy-D-gluconate 3 33.3 82 0.0018 28.1 5.0 35 14-51 14-48 (258)
330 COG0151 PurD Phosphoribosylami 33.3 3E+02 0.0066 26.7 8.7 34 15-53 1-34 (428)
331 PF10083 DUF2321: Uncharacteri 33.2 1.2E+02 0.0027 24.7 5.2 70 374-452 77-146 (158)
332 PRK04296 thymidine kinase; Pro 33.2 2.4E+02 0.0053 23.9 7.6 35 16-50 3-38 (190)
333 PRK06270 homoserine dehydrogen 33.0 2.4E+02 0.0052 26.7 8.2 58 340-398 80-149 (341)
334 PLN03050 pyridoxine (pyridoxam 33.0 84 0.0018 28.2 4.8 33 15-50 61-95 (246)
335 COG1043 LpxA Acyl-[acyl carrie 32.9 72 0.0016 28.2 4.2 46 402-457 205-253 (260)
336 PRK07454 short chain dehydroge 32.5 93 0.002 27.3 5.2 35 13-50 4-38 (241)
337 PLN02948 phosphoribosylaminoim 32.4 5.5E+02 0.012 26.5 11.2 34 14-52 22-55 (577)
338 cd03412 CbiK_N Anaerobic cobal 32.2 74 0.0016 25.1 4.0 38 271-308 1-40 (127)
339 PRK13768 GTPase; Provisional 32.2 1.3E+02 0.0029 26.9 6.1 36 16-51 4-39 (253)
340 PRK01231 ppnK inorganic polyph 32.1 72 0.0016 29.5 4.4 54 346-417 61-118 (295)
341 TIGR00959 ffh signal recogniti 32.0 2E+02 0.0044 28.2 7.7 38 16-53 101-139 (428)
342 PRK13604 luxD acyl transferase 31.7 1E+02 0.0022 28.6 5.3 37 13-49 35-71 (307)
343 PRK01185 ppnK inorganic polyph 31.5 66 0.0014 29.3 4.0 53 347-417 52-105 (271)
344 PRK14075 pnk inorganic polypho 31.3 68 0.0015 28.9 4.0 53 347-417 41-94 (256)
345 PRK06719 precorrin-2 dehydroge 31.3 72 0.0016 26.2 3.9 33 14-51 13-45 (157)
346 PRK07525 sulfoacetaldehyde ace 31.1 1.8E+02 0.004 29.9 7.7 28 347-376 68-101 (588)
347 TIGR03026 NDP-sugDHase nucleot 31.0 68 0.0015 31.3 4.3 31 15-50 1-31 (411)
348 PLN02935 Bifunctional NADH kin 31.0 67 0.0015 32.0 4.1 53 346-417 261-318 (508)
349 PF03808 Glyco_tran_WecB: Glyc 31.0 3E+02 0.0064 23.0 7.6 92 31-147 37-138 (172)
350 TIGR00460 fmt methionyl-tRNA f 30.9 73 0.0016 29.7 4.3 32 15-51 1-32 (313)
351 PLN02929 NADH kinase 30.7 47 0.001 30.7 2.9 66 346-417 63-137 (301)
352 TIGR01012 Sa_S2_E_A ribosomal 30.6 77 0.0017 27.2 4.0 32 113-144 108-141 (196)
353 TIGR00147 lipid kinase, YegS/R 30.6 1.7E+02 0.0037 26.8 6.7 30 347-378 57-92 (293)
354 TIGR01285 nifN nitrogenase mol 30.5 2.9E+02 0.0064 27.2 8.6 87 14-140 311-397 (432)
355 COG2120 Uncharacterized protei 30.4 92 0.002 27.7 4.7 41 11-51 7-47 (237)
356 PF04244 DPRP: Deoxyribodipyri 30.4 52 0.0011 29.0 3.0 25 27-51 47-71 (224)
357 PF00070 Pyr_redox: Pyridine n 30.1 84 0.0018 22.1 3.7 23 29-51 9-31 (80)
358 PF03698 UPF0180: Uncharacteri 30.1 48 0.001 23.7 2.2 21 31-51 10-30 (80)
359 PF07894 DUF1669: Protein of u 30.0 1.1E+02 0.0023 28.0 5.0 48 94-144 132-184 (284)
360 COG3349 Uncharacterized conser 30.0 69 0.0015 31.8 4.0 32 15-51 1-32 (485)
361 PRK05636 replicative DNA helic 30.0 1.1E+02 0.0024 30.8 5.6 35 17-51 268-303 (505)
362 PRK12315 1-deoxy-D-xylulose-5- 30.0 5.4E+02 0.012 26.6 10.6 52 355-415 524-580 (581)
363 cd01421 IMPCH Inosine monophos 29.9 75 0.0016 27.0 3.7 85 29-122 11-100 (187)
364 TIGR01005 eps_transp_fam exopo 29.4 3.1E+02 0.0066 29.4 9.2 38 14-51 545-584 (754)
365 cd01983 Fer4_NifH The Fer4_Nif 29.2 1.3E+02 0.0029 21.3 4.9 33 17-49 2-34 (99)
366 PF04722 Ssu72: Ssu72-like pro 29.1 3.7E+02 0.008 23.0 8.8 35 14-51 1-35 (195)
367 cd01147 HemV-2 Metal binding p 29.0 83 0.0018 28.2 4.3 37 101-142 67-106 (262)
368 COG0062 Uncharacterized conser 28.9 1.2E+02 0.0025 26.3 4.8 35 14-51 49-85 (203)
369 PRK10427 putative PTS system f 28.9 1.3E+02 0.0028 23.3 4.6 37 15-51 3-42 (114)
370 PRK06456 acetolactate synthase 28.8 1.6E+02 0.0034 30.3 6.7 28 347-376 68-101 (572)
371 KOG0780 Signal recognition par 28.8 2.4E+02 0.0052 27.2 7.0 37 15-51 102-138 (483)
372 cd00861 ProRS_anticodon_short 28.7 1.1E+02 0.0024 22.1 4.3 35 15-49 2-38 (94)
373 COG0162 TyrS Tyrosyl-tRNA synt 28.7 85 0.0018 30.4 4.3 38 13-51 33-73 (401)
374 TIGR01915 npdG NADPH-dependent 28.7 62 0.0013 28.3 3.3 31 15-50 1-32 (219)
375 PLN00141 Tic62-NAD(P)-related 28.6 1.4E+02 0.003 26.6 5.7 35 12-50 15-49 (251)
376 PRK03501 ppnK inorganic polyph 28.6 72 0.0016 28.9 3.7 53 348-417 40-97 (264)
377 PF02016 Peptidase_S66: LD-car 28.6 71 0.0015 29.3 3.8 74 284-378 46-121 (284)
378 TIGR03453 partition_RepA plasm 28.5 95 0.0021 30.0 4.8 40 12-51 101-142 (387)
379 PRK07710 acetolactate synthase 28.5 2.2E+02 0.0047 29.3 7.6 28 347-376 78-111 (571)
380 cd01143 YvrC Periplasmic bindi 28.4 95 0.0021 26.2 4.4 39 100-143 52-91 (195)
381 PF06506 PrpR_N: Propionate ca 28.4 68 0.0015 26.9 3.4 110 26-145 17-154 (176)
382 COG1698 Uncharacterized protei 28.4 2.1E+02 0.0045 20.9 5.1 47 406-455 17-64 (93)
383 PRK03359 putative electron tra 28.4 1E+02 0.0022 27.8 4.6 31 113-143 112-148 (256)
384 PRK06276 acetolactate synthase 28.3 2E+02 0.0042 29.7 7.3 28 347-376 63-96 (586)
385 PRK10037 cell division protein 28.3 89 0.0019 28.0 4.3 29 23-51 11-39 (250)
386 COG1422 Predicted membrane pro 28.3 3.8E+02 0.0083 23.0 7.5 83 360-454 23-106 (201)
387 PRK07206 hypothetical protein; 28.3 2.4E+02 0.0053 27.4 7.7 31 16-51 4-34 (416)
388 PF05014 Nuc_deoxyrib_tr: Nucl 28.0 79 0.0017 24.1 3.4 39 342-380 56-100 (113)
389 PF12695 Abhydrolase_5: Alpha/ 27.6 1.5E+02 0.0034 23.1 5.3 34 18-51 2-35 (145)
390 cd07037 TPP_PYR_MenD Pyrimidin 27.6 36 0.00077 28.2 1.5 29 347-377 60-94 (162)
391 PF00920 ILVD_EDD: Dehydratase 27.5 79 0.0017 31.6 4.0 49 95-147 65-117 (521)
392 PRK08229 2-dehydropantoate 2-r 27.4 68 0.0015 30.3 3.6 32 15-51 3-34 (341)
393 PF03720 UDPG_MGDP_dh_C: UDP-g 27.3 78 0.0017 23.9 3.2 22 29-50 17-38 (106)
394 PF07905 PucR: Purine cataboli 27.3 3E+02 0.0065 21.4 7.2 55 261-325 36-91 (123)
395 TIGR03371 cellulose_yhjQ cellu 27.3 90 0.002 27.6 4.2 30 22-51 10-39 (246)
396 PRK08322 acetolactate synthase 27.3 2.8E+02 0.0062 28.2 8.2 28 347-376 63-96 (547)
397 cd01840 SGNH_hydrolase_yrhL_li 27.2 1.3E+02 0.0028 24.3 4.7 39 270-309 50-88 (150)
398 PRK13055 putative lipid kinase 27.1 1.9E+02 0.0041 27.2 6.5 82 273-378 6-94 (334)
399 PRK13057 putative lipid kinase 27.1 1.3E+02 0.0028 27.6 5.2 32 345-378 48-83 (287)
400 PF04321 RmlD_sub_bind: RmlD s 27.1 2.7E+02 0.0059 25.5 7.4 30 15-48 1-30 (286)
401 PRK05246 glutathione synthetas 27.1 78 0.0017 29.6 3.8 37 15-51 2-41 (316)
402 PRK14569 D-alanyl-alanine synt 27.0 1.3E+02 0.0029 27.7 5.3 38 13-50 2-43 (296)
403 COG1797 CobB Cobyrinic acid a, 27.0 1E+02 0.0022 30.0 4.5 29 20-48 7-35 (451)
404 PRK00652 lpxK tetraacyldisacch 26.9 1.1E+02 0.0024 28.7 4.7 37 16-52 51-89 (325)
405 PF01695 IstB_IS21: IstB-like 26.9 1.3E+02 0.0029 25.2 4.9 39 13-51 46-84 (178)
406 PRK06841 short chain dehydroge 26.8 1.3E+02 0.0029 26.6 5.3 33 15-50 15-47 (255)
407 COG3195 Uncharacterized protei 26.8 2.8E+02 0.0062 22.9 6.2 94 341-435 65-164 (176)
408 COG0503 Apt Adenine/guanine ph 26.7 1.4E+02 0.003 25.2 4.9 31 112-142 52-84 (179)
409 PRK13185 chlL protochlorophyll 26.7 1.2E+02 0.0025 27.5 4.8 36 16-51 4-39 (270)
410 PRK05114 hypothetical protein; 26.6 1.9E+02 0.0042 19.0 4.6 16 440-455 26-41 (59)
411 PRK13054 lipid kinase; Reviewe 26.5 2.3E+02 0.005 26.1 6.9 30 347-378 56-93 (300)
412 PRK07773 replicative DNA helic 26.5 1.9E+02 0.0041 31.7 7.0 36 17-52 220-256 (886)
413 TIGR01162 purE phosphoribosyla 26.5 3.7E+02 0.008 22.2 10.8 134 276-437 3-147 (156)
414 PF10649 DUF2478: Protein of u 26.4 3.7E+02 0.0081 22.2 14.7 112 19-144 3-133 (159)
415 PRK13017 dihydroxy-acid dehydr 26.3 1.2E+02 0.0026 30.9 5.0 48 94-145 105-156 (596)
416 PLN02327 CTP synthase 26.3 1E+02 0.0023 31.1 4.6 37 15-51 1-40 (557)
417 PF03358 FMN_red: NADPH-depend 26.1 93 0.002 25.1 3.7 36 15-50 1-39 (152)
418 CHL00194 ycf39 Ycf39; Provisio 26.1 1.3E+02 0.0028 28.0 5.2 33 15-51 1-33 (317)
419 PRK12448 dihydroxy-acid dehydr 26.1 1.3E+02 0.0028 30.8 5.2 47 95-145 97-147 (615)
420 PRK13059 putative lipid kinase 26.0 2.2E+02 0.0047 26.3 6.5 30 347-378 56-91 (295)
421 PRK13337 putative lipid kinase 26.0 2.1E+02 0.0046 26.4 6.5 29 348-378 58-92 (304)
422 PRK13016 dihydroxy-acid dehydr 26.0 1.2E+02 0.0025 30.9 4.8 48 94-145 100-151 (577)
423 TIGR03837 efp_adjacent_2 conse 26.0 1.3E+02 0.0028 28.6 4.9 35 17-51 3-38 (371)
424 PLN02496 probable phosphopanto 26.0 92 0.002 27.1 3.7 44 12-57 17-60 (209)
425 PRK08309 short chain dehydroge 25.9 1.2E+02 0.0027 25.4 4.5 31 15-50 1-31 (177)
426 TIGR00110 ilvD dihydroxy-acid 25.9 1.3E+02 0.0028 30.3 5.1 47 95-145 75-125 (535)
427 PF02776 TPP_enzyme_N: Thiamin 25.8 37 0.00081 28.3 1.3 31 346-378 63-99 (172)
428 COG4088 Predicted nucleotide k 25.7 86 0.0019 27.3 3.3 35 17-51 4-38 (261)
429 PRK00911 dihydroxy-acid dehydr 25.7 1.3E+02 0.0028 30.5 5.1 47 95-145 95-145 (552)
430 cd02040 NifH NifH gene encodes 25.6 1.2E+02 0.0026 27.3 4.7 36 16-51 3-38 (270)
431 PRK14618 NAD(P)H-dependent gly 25.5 99 0.0021 29.0 4.2 33 14-51 4-36 (328)
432 PRK08199 thiamine pyrophosphat 25.5 1.8E+02 0.0038 29.8 6.4 28 347-376 71-104 (557)
433 PRK04761 ppnK inorganic polyph 25.4 44 0.00095 29.9 1.7 28 348-377 26-57 (246)
434 PF02780 Transketolase_C: Tran 25.4 1.1E+02 0.0024 23.8 3.9 38 12-51 7-44 (124)
435 PRK14076 pnk inorganic polypho 25.3 89 0.0019 32.1 4.1 53 347-417 348-404 (569)
436 PRK06924 short chain dehydroge 25.3 1.3E+02 0.0027 26.7 4.8 33 15-50 1-33 (251)
437 COG1066 Sms Predicted ATP-depe 25.3 52 0.0011 31.7 2.2 37 16-53 95-131 (456)
438 PRK07688 thiamine/molybdopteri 25.2 3.8E+02 0.0082 25.4 8.0 32 14-50 24-56 (339)
439 COG1028 FabG Dehydrogenases wi 25.2 1.4E+02 0.003 26.4 5.0 35 14-51 4-38 (251)
440 TIGR03029 EpsG chain length de 25.2 1.5E+02 0.0032 26.9 5.2 40 12-51 100-141 (274)
441 PRK02122 glucosamine-6-phospha 25.2 1.1E+02 0.0024 32.0 4.7 39 12-50 367-405 (652)
442 PF03446 NAD_binding_2: NAD bi 25.1 79 0.0017 26.1 3.1 30 15-49 2-31 (163)
443 PRK07236 hypothetical protein; 25.0 1.3E+02 0.0028 28.9 5.1 36 10-50 2-37 (386)
444 CHL00175 minD septum-site dete 25.0 1.5E+02 0.0032 27.0 5.3 38 14-51 14-53 (281)
445 PRK13982 bifunctional SbtC-lik 24.9 96 0.0021 30.8 4.1 40 14-54 70-109 (475)
446 PRK04020 rps2P 30S ribosomal p 24.9 1.1E+02 0.0023 26.6 3.8 32 113-144 114-147 (204)
447 PRK06131 dihydroxy-acid dehydr 24.9 1.4E+02 0.0029 30.5 5.1 47 95-145 97-147 (571)
448 PF02302 PTS_IIB: PTS system, 24.8 1.3E+02 0.0027 21.7 3.9 35 16-50 1-36 (90)
449 PRK14494 putative molybdopteri 24.8 1.4E+02 0.0029 26.5 4.6 36 15-50 1-37 (229)
450 COG0240 GpsA Glycerol-3-phosph 24.8 1.1E+02 0.0023 28.8 4.1 32 15-51 2-33 (329)
451 PRK09739 hypothetical protein; 24.8 2E+02 0.0043 24.6 5.7 37 14-50 3-42 (199)
452 PRK05693 short chain dehydroge 24.6 1.2E+02 0.0026 27.4 4.5 33 15-50 1-33 (274)
453 TIGR00234 tyrS tyrosyl-tRNA sy 24.5 97 0.0021 29.8 4.0 39 12-51 30-71 (377)
454 PRK14092 2-amino-4-hydroxy-6-h 24.5 1.8E+02 0.0039 24.2 5.0 31 269-299 5-35 (163)
455 KOG1210 Predicted 3-ketosphing 24.5 1.3E+02 0.0027 28.0 4.4 35 14-51 32-66 (331)
456 PF10087 DUF2325: Uncharacteri 24.5 2.2E+02 0.0048 20.9 5.2 36 112-147 47-88 (97)
457 PRK06179 short chain dehydroge 24.3 1.3E+02 0.0029 26.9 4.8 33 16-51 5-37 (270)
458 COG4566 TtrR Response regulato 24.2 4.4E+02 0.0095 22.6 7.1 50 366-417 73-122 (202)
459 TIGR01963 PHB_DH 3-hydroxybuty 24.1 1.3E+02 0.0028 26.6 4.6 33 16-51 2-34 (255)
460 TIGR00853 pts-lac PTS system, 24.0 2.2E+02 0.0048 21.0 5.0 39 13-51 2-40 (95)
461 PRK13230 nitrogenase reductase 24.0 1.4E+02 0.003 27.2 4.9 36 16-51 3-38 (279)
462 PRK09219 xanthine phosphoribos 24.0 1.4E+02 0.003 25.5 4.4 32 112-143 49-82 (189)
463 PRK06180 short chain dehydroge 23.8 1.5E+02 0.0033 26.8 5.1 33 15-50 4-36 (277)
464 cd07766 DHQ_Fe-ADH Dehydroquin 23.8 1.5E+02 0.0032 27.9 5.1 29 347-378 78-113 (332)
465 PF06032 DUF917: Protein of un 23.7 75 0.0016 30.3 3.0 101 21-139 17-121 (353)
466 PF01380 SIS: SIS domain SIS d 23.7 1.5E+02 0.0032 22.9 4.4 35 16-51 55-89 (131)
467 cd00550 ArsA_ATPase Oxyanion-t 23.7 1.3E+02 0.0027 27.1 4.4 36 17-52 3-38 (254)
468 PLN02695 GDP-D-mannose-3',5'-e 23.7 1.7E+02 0.0036 28.1 5.5 35 12-50 19-53 (370)
469 COG3640 CooC CO dehydrogenase 23.6 2.4E+02 0.0052 25.1 5.7 38 15-52 1-39 (255)
470 TIGR02329 propionate_PrpR prop 23.5 2.8E+02 0.0061 28.2 7.2 109 26-143 37-172 (526)
471 PF05693 Glycogen_syn: Glycoge 23.5 96 0.0021 31.7 3.8 94 340-434 462-566 (633)
472 PRK03767 NAD(P)H:quinone oxido 23.4 1.6E+02 0.0034 25.4 4.8 36 15-50 2-39 (200)
473 PLN02240 UDP-glucose 4-epimera 23.4 1.4E+02 0.003 28.2 4.9 32 15-50 6-37 (352)
474 PF13614 AAA_31: AAA domain; P 23.3 1.4E+02 0.003 24.1 4.3 35 18-52 5-39 (157)
475 PF03403 PAF-AH_p_II: Platelet 23.0 74 0.0016 30.7 2.9 39 13-51 98-136 (379)
476 PF00289 CPSase_L_chain: Carba 23.0 85 0.0018 24.0 2.7 69 287-367 12-90 (110)
477 TIGR00640 acid_CoA_mut_C methy 23.0 1.2E+02 0.0025 24.2 3.5 39 12-50 51-90 (132)
478 PRK04940 hypothetical protein; 23.0 2.3E+02 0.0049 24.0 5.4 31 113-143 60-91 (180)
479 cd01452 VWA_26S_proteasome_sub 22.8 2.6E+02 0.0057 23.8 5.8 37 15-51 108-145 (187)
480 PRK14116 gpmA phosphoglyceromu 22.8 40 0.00087 29.8 1.0 20 353-372 179-198 (228)
481 PRK08177 short chain dehydroge 22.7 1.5E+02 0.0033 25.7 4.7 34 15-51 1-34 (225)
482 cd01075 NAD_bind_Leu_Phe_Val_D 22.6 1.3E+02 0.0028 25.9 4.1 33 11-48 25-57 (200)
483 PF02826 2-Hacid_dh_C: D-isome 22.6 2.4E+02 0.0052 23.6 5.7 102 269-412 35-142 (178)
484 cd03466 Nitrogenase_NifN_2 Nit 22.6 7.4E+02 0.016 24.3 10.7 26 112-140 371-396 (429)
485 PRK09271 flavodoxin; Provision 22.5 1.7E+02 0.0037 24.0 4.7 35 15-49 1-36 (160)
486 cd01141 TroA_d Periplasmic bin 22.5 1.9E+02 0.0041 24.2 5.1 35 342-378 63-101 (186)
487 PF02635 DrsE: DsrE/DsrF-like 22.4 2.4E+02 0.0052 21.3 5.3 37 15-51 1-43 (122)
488 TIGR00355 purH phosphoribosyla 22.4 1.1E+02 0.0024 30.5 3.8 85 29-122 11-100 (511)
489 COG0129 IlvD Dihydroxyacid deh 22.3 1.6E+02 0.0034 29.9 4.9 45 97-145 108-156 (575)
490 cd02067 B12-binding B12 bindin 22.3 1.1E+02 0.0024 23.5 3.3 42 10-51 46-88 (119)
491 PF10673 DUF2487: Protein of u 22.2 2E+02 0.0044 23.2 4.7 44 12-55 47-98 (142)
492 PRK10490 sensor protein KdpD; 22.2 1.1E+02 0.0024 33.4 4.4 38 12-49 22-59 (895)
493 cd05014 SIS_Kpsf KpsF-like pro 22.1 2.6E+02 0.0056 21.6 5.5 48 16-65 49-96 (128)
494 COG0745 OmpR Response regulato 22.0 4.2E+02 0.0091 23.4 7.3 107 284-417 8-118 (229)
495 PRK08674 bifunctional phosphog 22.0 6.7E+02 0.015 23.6 9.3 56 16-72 80-135 (337)
496 PRK14620 NAD(P)H-dependent gly 21.9 1E+02 0.0022 28.9 3.6 32 15-51 1-32 (326)
497 PHA02519 plasmid partition pro 21.9 1.6E+02 0.0035 28.4 5.0 37 13-49 104-142 (387)
498 PLN02686 cinnamoyl-CoA reducta 21.8 1.7E+02 0.0038 27.9 5.2 35 13-50 51-85 (367)
499 COG0300 DltE Short-chain dehyd 21.8 87 0.0019 28.4 2.9 36 13-51 4-39 (265)
500 PF14626 RNase_Zc3h12a_2: Zc3h 21.8 1.2E+02 0.0027 23.4 3.2 26 28-53 9-34 (122)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.6e-69 Score=518.01 Aligned_cols=441 Identities=44% Similarity=0.810 Sum_probs=348.5
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCC-CCCCCceEEecCCCCCCCccCcccHHHHHHHHHH
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNP-SNYPHFSFNSISESLWESEVSTENAISLLTVLND 91 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (458)
.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+.... ....++++..+|+++|++.........++..+..
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~~~~~~~~~~~~ 85 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNLGPIEFLHKLNK 85 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCcccccccCHHHHHHHHHH
Confidence 567999999999999999999999999999999999998764221 1124699999998887643222233355555556
Q ss_pred hcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcC-CCccC--C
Q 012678 92 KCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGY-LAEQD--S 168 (458)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~--~ 168 (458)
.+...+.+.++++..+.. .++++||+|.+..|+..+|+++|||++.+++++++.++.+.+++....... .+... .
T Consensus 86 ~~~~~~~~~L~~l~~~~~--~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (451)
T PLN02410 86 ECQVSFKDCLGQLVLQQG--NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPKG 163 (451)
T ss_pred HhHHHHHHHHHHHHhccC--CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcccccc
Confidence 667777777777653222 457999999999999999999999999999999998877665443322111 12111 1
Q ss_pred CCccccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCccccCCcccccc
Q 012678 169 QLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPFHKYCL 248 (458)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGpl~~~~~ 248 (458)
.....+|+++.++.++++.........+...+.... ....++++++|||.+||+..+..++..+++|+++|||++....
T Consensus 164 ~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~ 242 (451)
T PLN02410 164 QQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLVAS 242 (451)
T ss_pred CccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccccC
Confidence 112347888777777776432222222333332222 3467889999999999999999988766678999999986432
Q ss_pred ccCCCccc-CccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHH
Q 012678 249 ASSSSLLS-QDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLE 327 (458)
Q Consensus 249 ~~~~~~~~-~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 327 (458)
. ...++ .+.++.+|||+++.++||||||||....+.+++.+++.+|+..+++|+|+++.....+.+....+|++|++
T Consensus 243 ~--~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~e 320 (451)
T PLN02410 243 A--PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSK 320 (451)
T ss_pred C--CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHH
Confidence 1 01122 22347899999888999999999999999999999999999999999999985321111112348999999
Q ss_pred hhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHH
Q 012678 328 MLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREI 407 (458)
Q Consensus 328 ~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 407 (458)
|.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+...++.++|
T Consensus 321 r~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v 400 (451)
T PLN02410 321 IISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAV 400 (451)
T ss_pred hccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998756999999767899999
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012678 408 ETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 458 (458)
Q Consensus 408 ~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (458)
+++|+++|.++++++||++|+++++++++|..+|||+++++++|++.+..+
T Consensus 401 ~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 401 ERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 999999998755679999999999999999999999999999999999865
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=5e-66 Score=497.82 Aligned_cols=436 Identities=29% Similarity=0.533 Sum_probs=342.8
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC----------C---CCCceEEecCCCCCCCccCc
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPS----------N---YPHFSFNSISESLWESEVST 79 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~~ 79 (458)
.+.||+++|+|++||++|++.||+.|+.+|..|||++++.+..... . ...++|..+|+++|++.+..
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~ 85 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRR 85 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCcccc
Confidence 3579999999999999999999999999999999999986543211 0 11366766788887654433
Q ss_pred ccHHHHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHH
Q 012678 80 ENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLE 159 (458)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 159 (458)
.+...++..+...+...+.+.++++... . .+++|||+|.+..|+..+|+++|||++.+++++++.++.+.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~--~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~---- 158 (480)
T PLN02555 86 QDLDLYLPQLELVGKREIPNLVKRYAEQ-G--RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY---- 158 (480)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHHHhcc-C--CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh----
Confidence 3444555555556677777777766422 1 23499999999999999999999999999999999888776642
Q ss_pred hcCCCccC---CCCccccCCCCCCCCCCCCCcccC--CCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCC
Q 012678 160 KGYLAEQD---SQLEKPVTELPPLRVKDIPIIVTH--DTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFP 234 (458)
Q Consensus 160 ~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 234 (458)
....+... ......+|+++.++.++++..... ....+.+.+.+..+....++++++|||.+||...+..++..
T Consensus 159 ~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~-- 236 (480)
T PLN02555 159 HGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL-- 236 (480)
T ss_pred hcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC--
Confidence 11112111 112235888888888888854421 22333444445555677888999999999999998888663
Q ss_pred CCccccCCccccccc--cC--CCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCC
Q 012678 235 IPMFPIGPFHKYCLA--SS--SSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPG 310 (458)
Q Consensus 235 ~pv~~vGpl~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 310 (458)
.|++.|||+...... .. ......++++.+||++++.+++|||||||+...+.+++.+++.+++..+++|||+++..
T Consensus 237 ~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~ 316 (480)
T PLN02555 237 CPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPP 316 (480)
T ss_pred CCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 259999999753211 00 11122334589999998888999999999999999999999999999999999999743
Q ss_pred CCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHH
Q 012678 311 LVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSH 390 (458)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 390 (458)
..........+|+++.++.++|+++++|+||.+||.|+++++|||||||||++||+++|||||++|+++||+.||+++++
T Consensus 317 ~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~ 396 (480)
T PLN02555 317 HKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVD 396 (480)
T ss_pred cccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHH
Confidence 21100002348889998999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhcceecC-----C-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 391 VWRVGLHLE-----R-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 391 ~~G~G~~l~-----~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
.+|+|+.+. . .++.++|.++|+++|++++++.+|+||++|++++++|+.+|||+++++++|++++.+
T Consensus 397 ~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 397 VFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred HhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 679999993 3 589999999999999876678999999999999999999999999999999999864
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=8.8e-66 Score=496.28 Aligned_cols=429 Identities=30% Similarity=0.538 Sum_probs=334.6
Q ss_pred cCCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC----CCCCceEEecCCCCCCCccCcccHHHHH
Q 012678 11 QKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPS----NYPHFSFNSISESLWESEVSTENAISLL 86 (458)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (458)
+..+.||+++|++++||++|++.||+.|+.+|++|||++++.+..... ..++++++.+|++.+++. ..++..++
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~--~~~~~~l~ 80 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP--PRDFFSIE 80 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc--cccHHHHH
Confidence 455679999999999999999999999999999999999986543221 123699999998765322 12333444
Q ss_pred HHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCcc
Q 012678 87 TVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQ 166 (458)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 166 (458)
..+...+...+.++++++... .+++|||+|.+..|+..+|+++|||++.++++++..+..+.+.+........+..
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~----~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDED----GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISET 156 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCC----CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccc
Confidence 444445667777777666431 2459999999999999999999999999999988877766655433222221111
Q ss_pred C-CC---CccccCCCCCCCCCCCCCcccCC--CchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhc----CCCC
Q 012678 167 D-SQ---LEKPVTELPPLRVKDIPIIVTHD--TRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKD----FPIP 236 (458)
Q Consensus 167 ~-~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~----~~~p 236 (458)
+ .. ....+|+++.++.++++...... .....+.+.+..+....++++++|||.+||+..+..+... +.++
T Consensus 157 ~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~ 236 (448)
T PLN02562 157 GCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQ 236 (448)
T ss_pred cccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCC
Confidence 1 11 11247888778888887644222 2233455555556677788999999999999877765532 2356
Q ss_pred ccccCCcccccccc--CCCcccCccccchhhccCCCCcEEEEEcCccc-cCCHHHHHHHHHHHHhCCCceEEEEcCCCCC
Q 012678 237 MFPIGPFHKYCLAS--SSSLLSQDQSCISWLDKQAAKSVMYVSFGSIV-VVNVTEFLEIAWGLANSRVPFLWVVRPGLVP 313 (458)
Q Consensus 237 v~~vGpl~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 313 (458)
++.|||++...... ....++.+.++.+||++++.+++|||||||+. ..+.+++.+++.+|++.+++|||+++...
T Consensus 237 v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~-- 314 (448)
T PLN02562 237 ILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW-- 314 (448)
T ss_pred EEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc--
Confidence 99999998653210 01113444457799999888899999999986 57899999999999999999999997532
Q ss_pred CCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHh
Q 012678 314 GVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWR 393 (458)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G 393 (458)
.+.+|++++++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|
T Consensus 315 ----~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g 390 (448)
T PLN02562 315 ----REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWK 390 (448)
T ss_pred ----hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhC
Confidence 1248889999999999999999999999999999999999999999999999999999999999999999986469
Q ss_pred cceecCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 394 VGLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 394 ~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
+|+.+. +++.++|.++|+++|++ ++||++|++++++++++ .+|||+++++++|+++++
T Consensus 391 ~g~~~~-~~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 391 IGVRIS-GFGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred ceeEeC-CCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 998886 48999999999999998 89999999999999877 567999999999999874
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.6e-65 Score=490.18 Aligned_cols=422 Identities=31% Similarity=0.495 Sum_probs=335.8
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC--CCCCceEEecCCCCCCCc-cCcccHHHHHHH
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPS--NYPHFSFNSISESLWESE-VSTENAISLLTV 88 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 88 (458)
+++.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... ..++++++.+|++++++. +...+...++..
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~ 82 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQN 82 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHH
Confidence 34579999999999999999999999999999999999986643321 124699999999888732 333345566666
Q ss_pred HHHhcChhHHHHHHHHhhCCCCCCCe-eEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccC
Q 012678 89 LNDKCVVPFQDCLAKLISNGDQEEPV-TCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQD 167 (458)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~p-DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 167 (458)
+...+...+.++++++... .+| ||||+|.+.+|+..+|+++|||++.+++++++....+.+ ... ..
T Consensus 83 ~~~~~~~~~~~~l~~~~~~----~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~~------- 149 (449)
T PLN02173 83 FKTFGSKTVADIIRKHQST----DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-NN------- 149 (449)
T ss_pred HHHhhhHHHHHHHHHhhcc----CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-cc-------
Confidence 6667778888887776432 245 999999999999999999999999999988777655432 111 11
Q ss_pred CCCccccCCCCCCCCCCCCCcccC--CCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCccccCCccc
Q 012678 168 SQLEKPVTELPPLRVKDIPIIVTH--DTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPFHK 245 (458)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGpl~~ 245 (458)
......+|+++.++.++++..... ......+.+.+..+....++++++||+.+||+..+..++.. +|++.|||+++
T Consensus 150 ~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~v~~VGPl~~ 227 (449)
T PLN02173 150 GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--CPVLTIGPTVP 227 (449)
T ss_pred CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--CCeeEEcccCc
Confidence 112233678887888888764432 12223443444455677889999999999999998888652 47999999974
Q ss_pred cc-------cccCC--Ccc--cCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCC
Q 012678 246 YC-------LASSS--SLL--SQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPG 314 (458)
Q Consensus 246 ~~-------~~~~~--~~~--~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 314 (458)
.. ..... +.+ ..++++.+||++++.+++|||||||....+.+++.+++.+| .+.+|+|++....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~--- 302 (449)
T PLN02173 228 SMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE--- 302 (449)
T ss_pred hhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc---
Confidence 21 00000 011 22345889999988899999999999999999999999999 5678999997532
Q ss_pred CcccCCCchhHHHhh-cCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHh
Q 012678 315 VEWLEPLPKGFLEML-DGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWR 393 (458)
Q Consensus 315 ~~~~~~l~~~~~~~~-~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G 393 (458)
...+|+++.++. ++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||
T Consensus 303 ---~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g 379 (449)
T PLN02173 303 ---ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWK 379 (449)
T ss_pred ---hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhC
Confidence 224888888887 5788999999999999999999999999999999999999999999999999999999997579
Q ss_pred cceecCC-----cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 394 VGLHLER-----KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 394 ~G~~l~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
+|+.+.. .++.++|+++|+++|++++++.+|++|+++++++++|..+|||+++++++|++++.
T Consensus 380 ~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 380 VGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred ceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 9988853 25899999999999988667899999999999999999999999999999999874
No 5
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.8e-65 Score=491.10 Aligned_cols=431 Identities=29% Similarity=0.478 Sum_probs=330.9
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHH-hCCCEEEEEeCCCCCCCC----CCCCCceEEecCC----CCCCCccCcccHH
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILY-SKGFSITIIHTNFNSPNP----SNYPHFSFNSISE----SLWESEVSTENAI 83 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~ 83 (458)
.+.||+++|++++||++|++.||+.|+ ++|+.|||++++.+.... ...+++.++.+|. ++++... +..
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~~---~~~ 80 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPSA---HVV 80 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCCc---cHH
Confidence 457999999999999999999999998 789999999998764321 1113688888884 3432111 222
Q ss_pred HHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCC
Q 012678 84 SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYL 163 (458)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (458)
..+......+...+.+++.++ . .+|++||+|.+..|+..+|+++|||++.+++++++.++.+.+.+........
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~----~--~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 154 (481)
T PLN02992 81 TKIGVIMREAVPTLRSKIAEM----H--QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKE 154 (481)
T ss_pred HHHHHHHHHhHHHHHHHHHhc----C--CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccc
Confidence 222222333444455555443 1 4689999999999999999999999999999999887766554332111000
Q ss_pred CccCCCCccccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhc--C----CCCc
Q 012678 164 AEQDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKD--F----PIPM 237 (458)
Q Consensus 164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~--~----~~pv 237 (458)
+.........+|+++.++..+++.............+.+.......++++++||+.+||+..+..++.. + .+|+
T Consensus 155 ~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v 234 (481)
T PLN02992 155 EHTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPV 234 (481)
T ss_pred ccccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCce
Confidence 000011123478887777777774332333334455555556677889999999999999999887642 1 2579
Q ss_pred cccCCccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCC----
Q 012678 238 FPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVP---- 313 (458)
Q Consensus 238 ~~vGpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~---- 313 (458)
+.|||+...... . ..++++.+|||+++.++||||||||...++.+++.+++.+|+..+++|||++......
T Consensus 235 ~~VGPl~~~~~~---~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~ 309 (481)
T PLN02992 235 YPIGPLCRPIQS---S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACS 309 (481)
T ss_pred EEecCccCCcCC---C--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccccc
Confidence 999999754221 1 2334589999998889999999999999999999999999999999999999642100
Q ss_pred ----------CCcccCCCchhHHHhhcCCccee-eccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchh
Q 012678 314 ----------GVEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQL 382 (458)
Q Consensus 314 ----------~~~~~~~l~~~~~~~~~~~~~~~-~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 382 (458)
..+..+.+|++|.+|..+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 310 ~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~ 389 (481)
T PLN02992 310 AYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQN 389 (481)
T ss_pred ccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhH
Confidence 00002248999999999887765 9999999999999999999999999999999999999999999999
Q ss_pred hHHHHHH-HHHhcceecCC---cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHh
Q 012678 383 VNARYVS-HVWRVGLHLER---KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLL--EAGSSYQSLERLVDHIL 456 (458)
Q Consensus 383 ~na~~v~-~~~G~G~~l~~---~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~ 456 (458)
.||++++ + +|+|+.++. .++.++|.++|+++|.+++++.+|++++++++++++|.. +|||+++++++|++.+.
T Consensus 390 ~na~~~~~~-~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~ 468 (481)
T PLN02992 390 MNAALLSDE-LGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQ 468 (481)
T ss_pred HHHHHHHHH-hCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 9999995 6 799999965 489999999999999876668999999999999999994 59999999999999987
Q ss_pred cC
Q 012678 457 SF 458 (458)
Q Consensus 457 ~~ 458 (458)
++
T Consensus 469 ~~ 470 (481)
T PLN02992 469 RF 470 (481)
T ss_pred HH
Confidence 53
No 6
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-64 Score=485.13 Aligned_cols=437 Identities=25% Similarity=0.416 Sum_probs=331.9
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCC--CEEEEEeCCCCCC-C----C----CCCCCceEEecCCCCC-CCccCcc
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKG--FSITIIHTNFNSP-N----P----SNYPHFSFNSISESLW-ESEVSTE 80 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~-~----~----~~~~~~~~~~~~~~~~-~~~~~~~ 80 (458)
++.||+++|++++||++|++.||+.|+.+| ..|||++++.+.. . . ...++++++.+|+... .+.....
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccccc
Confidence 557999999999999999999999999998 9999999986541 0 1 1123689999996432 1111123
Q ss_pred cHHHHHHHHHHhcChhHHHHHHHHhhCC--CCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHH
Q 012678 81 NAISLLTVLNDKCVVPFQDCLAKLISNG--DQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILL 158 (458)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 158 (458)
+....+..+...+...+.+.+.++++.. ++ .+++|||+|.+..|+..+|+++|||++.++++++..++.+.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALDG-VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccCC-CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 3444444444556555555555554321 10 13499999999999999999999999999999998887766544221
Q ss_pred Hh-cCCCccCCCCccccCCC-CCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhh-cCCC
Q 012678 159 EK-GYLAEQDSQLEKPVTEL-PPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHK-DFPI 235 (458)
Q Consensus 159 ~~-~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~-~~~~ 235 (458)
.. ...+.........+|++ +.++.++++....... . ...+.+......+++++++||++++|++.+..++. ...+
T Consensus 161 ~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~-~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p 238 (468)
T PLN02207 161 SKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED-G-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQNYP 238 (468)
T ss_pred ccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc-c-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccCCC
Confidence 11 00110011122357887 5788888885442222 2 33333444567889999999999999998887754 2235
Q ss_pred CccccCCccccccccCC-CcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCC
Q 012678 236 PMFPIGPFHKYCLASSS-SLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPG 314 (458)
Q Consensus 236 pv~~vGpl~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 314 (458)
+++.|||++........ .....++++.+|||+++.+++|||||||....+.+++.+++.+|+..+++|||+++......
T Consensus 239 ~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~ 318 (468)
T PLN02207 239 SVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTN 318 (468)
T ss_pred cEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccc
Confidence 69999999864321000 00112245899999988899999999999999999999999999999999999998532111
Q ss_pred CcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhc
Q 012678 315 VEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRV 394 (458)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~ 394 (458)
.+.+|++|+++.++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+
T Consensus 319 ---~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gv 395 (468)
T PLN02207 319 ---DDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKL 395 (468)
T ss_pred ---cccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCc
Confidence 23489999999999999999999999999999999999999999999999999999999999999999987654799
Q ss_pred ceecC------C--cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 395 GLHLE------R--KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 395 G~~l~------~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
|+.+. . .++.++|.++|+++|++ +.++||+||+++++.+++|+.+|||+++++++|++++.
T Consensus 396 Gv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~ 464 (468)
T PLN02207 396 AVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVI 464 (468)
T ss_pred eEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 98662 1 35999999999999972 23899999999999999999999999999999999886
No 7
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.7e-64 Score=491.35 Aligned_cols=432 Identities=32% Similarity=0.526 Sum_probs=334.7
Q ss_pred cccCCCCEEEEEcCCCCcCHHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCC---CCCceEEecCCCCCCCccCcccHH
Q 012678 9 VQQKKGRRVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSN---YPHFSFNSISESLWESEVSTENAI 83 (458)
Q Consensus 9 ~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 83 (458)
+...++.||+++|+|++||++|++.||++|++| ||+|||++++.+...... .++++|+.+|++++++.....+..
T Consensus 5 ~~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~~ 84 (459)
T PLN02448 5 SSPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADFP 84 (459)
T ss_pred CCCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCHH
Confidence 445678899999999999999999999999999 999999999865433322 147999999987665443333444
Q ss_pred HHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCC
Q 012678 84 SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYL 163 (458)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (458)
.++..+...+...+.++++++. .++|+||+|.++.|+..+|+++|||+|.++++++..++.+.+.+........
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 158 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHF 158 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCC
Confidence 5555544455555556555542 3589999999999999999999999999999999777766665433221111
Q ss_pred CccCC----CCccccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCccc
Q 012678 164 AEQDS----QLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFP 239 (458)
Q Consensus 164 p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~ 239 (458)
+.... .....+|+++.++..+++...........+.+.........++.+++||+.+||+..+..+.+.++.|++.
T Consensus 159 ~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~ 238 (459)
T PLN02448 159 PVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYP 238 (459)
T ss_pred CCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEE
Confidence 22111 11123677777777777754333333334444444555677789999999999999898888766668999
Q ss_pred cCCccccccc--cCCC-cc-cCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCC
Q 012678 240 IGPFHKYCLA--SSSS-LL-SQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGV 315 (458)
Q Consensus 240 vGpl~~~~~~--~~~~-~~-~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 315 (458)
|||+...... .... .. +.+.++.+|++.++.+++|||||||....+.+++.+++.+|+..+++|||++....
T Consensus 239 iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~---- 314 (459)
T PLN02448 239 IGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA---- 314 (459)
T ss_pred ecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch----
Confidence 9999753211 0000 01 11235789999988899999999999888889999999999999999999876421
Q ss_pred cccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcc
Q 012678 316 EWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVG 395 (458)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G 395 (458)
..+.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.||+|
T Consensus 315 -------~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G 387 (459)
T PLN02448 315 -------SRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIG 387 (459)
T ss_pred -------hhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCce
Confidence 2344445567888999999999999999999999999999999999999999999999999999998757888
Q ss_pred eecCC------cccHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 396 LHLER------KFERREIETAIRRVTVE--AEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 396 ~~l~~------~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
+.+.. .+++++|+++|+++|++ +++.+||++|++++++++++..+|||+++++++|++.+.+
T Consensus 388 ~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 388 WRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred EEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 88742 47999999999999986 2467999999999999999999999999999999999874
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.2e-64 Score=486.94 Aligned_cols=426 Identities=29% Similarity=0.508 Sum_probs=327.9
Q ss_pred cCCCCEEEEEcCCCCcCHHHHHHHHHH--HHhCCCEEEEEeCCCCCCCCCC----CCCceEEecCCCCCCCccCcccHHH
Q 012678 11 QKKGRRVILFPLPLQGHINPMLQLASI--LYSKGFSITIIHTNFNSPNPSN----YPHFSFNSISESLWESEVSTENAIS 84 (458)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~La~~--L~~rGh~Vt~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (458)
...+.||+++|++++||++|++.||++ |++||+.|||++++.+....+. ...+++..+|++++++.. .+...
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~--~~~~~ 82 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP--RAPET 82 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc--cCHHH
Confidence 556789999999999999999999999 5699999999999866433221 245777777877776542 23334
Q ss_pred HHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCC
Q 012678 85 LLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLA 164 (458)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 164 (458)
++..+.+.+...+ +++++. .+||+||+|.+..|+..+|+++|||++.+++.++..+..+.++... ....+
T Consensus 83 ~~~~~~~~~~~~l----~~~l~~----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~~~~~ 152 (456)
T PLN02210 83 LLKSLNKVGAKNL----SKIIEE----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--TNSFP 152 (456)
T ss_pred HHHHHHHhhhHHH----HHHHhc----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--cCCCC
Confidence 4544444444333 344433 4699999999999999999999999999999988887766653211 11111
Q ss_pred ccC-CCCccccCCCCCCCCCCCCCcccCCCch-HHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCccccCC
Q 012678 165 EQD-SQLEKPVTELPPLRVKDIPIIVTHDTRN-FHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGP 242 (458)
Q Consensus 165 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp 242 (458)
... ......+|+++.++.++++......... +...+.+..+....++++++||+.++|...+..+++ .+++++|||
T Consensus 153 ~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~--~~~v~~VGP 230 (456)
T PLN02210 153 DLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD--LKPVIPIGP 230 (456)
T ss_pred cccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh--cCCEEEEcc
Confidence 111 0111346777777777777543222222 223333454556678899999999999999988776 257999999
Q ss_pred ccccc---ccc----CC---CcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCC
Q 012678 243 FHKYC---LAS----SS---SLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLV 312 (458)
Q Consensus 243 l~~~~---~~~----~~---~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 312 (458)
++... ... .. ..+..++++.+|+++++++++|||||||....+.+++.+++.+|+..+.+|||+++....
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~ 310 (456)
T PLN02210 231 LVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK 310 (456)
T ss_pred cCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc
Confidence 97521 100 00 012234457899999888999999999999899999999999999999999999975321
Q ss_pred CCCcccCCCchhHHHhh-cCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHH
Q 012678 313 PGVEWLEPLPKGFLEML-DGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHV 391 (458)
Q Consensus 313 ~~~~~~~~l~~~~~~~~-~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 391 (458)
...++.+.++. ++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.
T Consensus 311 ------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~ 384 (456)
T PLN02210 311 ------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDV 384 (456)
T ss_pred ------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHH
Confidence 11345566666 47888899999999999999999999999999999999999999999999999999999864
Q ss_pred HhcceecCC-----cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 392 WRVGLHLER-----KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 392 ~G~G~~l~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
+|+|+.+.. .++.++|+++|+++|.+++++.+|+||+++++.+++|+++|||+++++++|++.|.
T Consensus 385 ~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 385 FGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred hCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 699999853 48999999999999988656789999999999999999999999999999999875
No 9
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.1e-64 Score=488.40 Aligned_cols=438 Identities=26% Similarity=0.422 Sum_probs=330.6
Q ss_pred cccCCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC----CCCCceEEecC----CCCCCCccCcc
Q 012678 9 VQQKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPS----NYPHFSFNSIS----ESLWESEVSTE 80 (458)
Q Consensus 9 ~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~ 80 (458)
.+...+.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... ..++++++.+| .++|++.+...
T Consensus 4 ~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~ 83 (477)
T PLN02863 4 LNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVK 83 (477)
T ss_pred cccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChh
Confidence 34567899999999999999999999999999999999999987753221 12357776654 24555544332
Q ss_pred cHH----HHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHH
Q 012678 81 NAI----SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQI 156 (458)
Q Consensus 81 ~~~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 156 (458)
+.. ..+......+...+.+.+.++ . .+|+|||+|.+..|+..+|+++|||++.+++++++.++.+.++..
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~----~--~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 84 DLPPSGFPLMIHALGELYAPLLSWFRSH----P--SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred hcchhhHHHHHHHHHHhHHHHHHHHHhC----C--CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 221 122222233344444444332 1 368999999999999999999999999999999999888776432
Q ss_pred HHHhcCCCccCC--CC-ccccCCCCCCCCCCCCCcccC--CCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhh
Q 012678 157 LLEKGYLAEQDS--QL-EKPVTELPPLRVKDIPIIVTH--DTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHK 231 (458)
Q Consensus 157 ~~~~~~~p~~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 231 (458)
..+ ...+.... .. ...+|+++.++.++++..... ......+.+.+.......++++++||+.+||+..+..++.
T Consensus 158 ~~~-~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 158 EMP-TKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred ccc-ccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 110 00000111 11 124677777888887754321 1223344444444445677889999999999999999987
Q ss_pred cCC-CCccccCCcccccccc------CCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceE
Q 012678 232 DFP-IPMFPIGPFHKYCLAS------SSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFL 304 (458)
Q Consensus 232 ~~~-~pv~~vGpl~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 304 (458)
.++ +|++.|||+....... ..+....++++.+||+.++++++|||||||....+.+++.+++.+|+..+++||
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~fl 316 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFI 316 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEE
Confidence 665 5799999997533110 000011234589999998889999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCcccCCCchhHHHhhcCCcce-eeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhh
Q 012678 305 WVVRPGLVPGVEWLEPLPKGFLEMLDGRGHI-VKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLV 383 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~ 383 (458)
|+++...... .....+|++|.++..+++.+ .+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 317 w~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 395 (477)
T PLN02863 317 WCVKEPVNEE-SDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFV 395 (477)
T ss_pred EEECCCcccc-cchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchh
Confidence 9998532111 01235899998888766655 499999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcceecCC----cccHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 384 NARYVSHVWRVGLHLER----KFERREIETAIRRVT-VEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 384 na~~v~~~~G~G~~l~~----~~~~~~l~~~i~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
||+++.+.+|+|+.+.. ..+.+++.++|+++| ++ +.||++|+++++.+++|+.+|||+++++++|++.+.+
T Consensus 396 na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~---~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~ 471 (477)
T PLN02863 396 NASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSEN---QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVE 471 (477)
T ss_pred hHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 99997654899999842 358999999999999 45 8999999999999999999999999999999999875
No 10
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.2e-64 Score=484.64 Aligned_cols=433 Identities=25% Similarity=0.390 Sum_probs=324.3
Q ss_pred cCCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC----C-CCCceEEecC----CCCCCCccCccc
Q 012678 11 QKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPS----N-YPHFSFNSIS----ESLWESEVSTEN 81 (458)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~----~-~~~~~~~~~~----~~~~~~~~~~~~ 81 (458)
...+.||+++|++++||++|++.||+.|+.||+.|||++++.+..... . .++++++.+| ++++++.+...+
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccc
Confidence 345679999999999999999999999999999999999987653222 1 1358888888 567765443223
Q ss_pred HH----HHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHH
Q 012678 82 AI----SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQIL 157 (458)
Q Consensus 82 ~~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 157 (458)
.. .++....+.+... ++++++. .++++||+|.+..|+..+|+++|||++.++++++..++.+.+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~----~~~~l~~----~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~ 154 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPP----LTTFLET----SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSL 154 (472)
T ss_pred cchhhHHHHHHHHHHhHHH----HHHHHHh----CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhh
Confidence 21 2233333444444 4444432 3589999999999999999999999999999998877765533222
Q ss_pred HHhcCCCccCCCCccccCCCC------CCCCCCCCCcccC--CCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHh
Q 012678 158 LEKGYLAEQDSQLEKPVTELP------PLRVKDIPIIVTH--DTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRL 229 (458)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~ 229 (458)
......+...... ..+|++. .++..+++..... ........+.+.......++++++|||.+||+..+..+
T Consensus 155 ~~~~~~~~~~~~~-~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l 233 (472)
T PLN02670 155 MEGGDLRSTAEDF-TVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLL 233 (472)
T ss_pred hhcccCCCccccc-cCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHH
Confidence 1111111111111 1133331 1333455433211 11122233333334566788999999999999999998
Q ss_pred hhcCCCCccccCCccccc-cccCCCcc--cCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEE
Q 012678 230 HKDFPIPMFPIGPFHKYC-LASSSSLL--SQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWV 306 (458)
Q Consensus 230 ~~~~~~pv~~vGpl~~~~-~~~~~~~~--~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 306 (458)
+..+++|++.|||+.... ........ ..++++.+|||++++++||||||||...++.+++.+++.+|+..+++|||+
T Consensus 234 ~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv 313 (472)
T PLN02670 234 SDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWV 313 (472)
T ss_pred HHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 876567899999997531 11000001 112458899999888999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcccCCCchhHHHhhcCCccee-eccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHH
Q 012678 307 VRPGLVPGVEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNA 385 (458)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na 385 (458)
+........+....+|++|.++.++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 314 ~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na 393 (472)
T PLN02670 314 LRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNT 393 (472)
T ss_pred EcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHH
Confidence 985321111112358999999999988875 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceecCC-----cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 386 RYVSHVWRVGLHLER-----KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 386 ~~v~~~~G~G~~l~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
+++++ +|+|+.+.. .++.++|+++|+++|.++++++||++|+++++.++ ..++...+++++++++.+
T Consensus 394 ~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~----~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 394 RLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG----DMDRNNRYVDELVHYLRE 465 (472)
T ss_pred HHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh----CcchhHHHHHHHHHHHHH
Confidence 99998 699999964 38999999999999988555699999999999999 789999999999999865
No 11
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.8e-63 Score=475.69 Aligned_cols=432 Identities=25% Similarity=0.418 Sum_probs=329.5
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhC-CCEEEEEeCCCCCCCC------CC---CCCceEEecCCCCCCCc-cCccc
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSK-GFSITIIHTNFNSPNP------SN---YPHFSFNSISESLWESE-VSTEN 81 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~-~~~~~ 81 (458)
++.||+++|++++||++|++.||+.|+.+ |..|||++++.+.... .. .++++++.+|....++. ....+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~ 81 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDAT 81 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCcc
Confidence 45699999999999999999999999987 9999999876433211 11 12588888885332221 10013
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCC-eEEEecchHHHHHHHHHHHHHHHh
Q 012678 82 AISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLP-RIVLRTSSISSFLAFSAFQILLEK 160 (458)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~~ 160 (458)
....+..+.+.+...+.+.++++. .+++|||+|.+.+|+..+|+++||| .+.++++.++....+.+.+.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~ 155 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMK------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTV 155 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcC------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcc
Confidence 333333444566666667666553 3589999999999999999999999 588888888777666554432111
Q ss_pred cCCCccCCCCccccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcC------C
Q 012678 161 GYLAEQDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDF------P 234 (458)
Q Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~------~ 234 (458)
.............+|+++.++.++++..+..........+....+....++++++|||.+||+..+..++..+ .
T Consensus 156 ~~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~ 235 (470)
T PLN03015 156 VEGEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMK 235 (470)
T ss_pred cccccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccC
Confidence 0000001011234788888888888854322222222223344445788999999999999999998887642 2
Q ss_pred CCccccCCccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCC--
Q 012678 235 IPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLV-- 312 (458)
Q Consensus 235 ~pv~~vGpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~-- 312 (458)
+|++.|||+...... ...++++.+|||+++.++||||||||....+.+++.+++.+|+..+++|||+++....
T Consensus 236 ~~v~~VGPl~~~~~~-----~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~ 310 (470)
T PLN03015 236 VPVYPIGPIVRTNVH-----VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYL 310 (470)
T ss_pred CceEEecCCCCCccc-----ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcccc
Confidence 579999999843211 1122358999999888999999999999999999999999999999999999974211
Q ss_pred -----CCCcccCCCchhHHHhhcCCccee-eccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHH
Q 012678 313 -----PGVEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNAR 386 (458)
Q Consensus 313 -----~~~~~~~~l~~~~~~~~~~~~~~~-~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 386 (458)
...+..+.+|++|.+|..+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 311 ~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~ 390 (470)
T PLN03015 311 GASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNAT 390 (470)
T ss_pred ccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHH
Confidence 000112358999999999999765 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcceecC----C-cccHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 387 YVSHVWRVGLHLE----R-KFERREIETAIRRVTVE--AEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 387 ~v~~~~G~G~~l~----~-~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
++++.+|+|+.+. . .++.++++++|+++|.+ ++++.+|+||+++++++++|+.+|||++++++++++.+
T Consensus 391 ~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 391 LLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 9954489999995 2 58999999999999963 44689999999999999999999999999999999886
No 12
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.5e-63 Score=484.32 Aligned_cols=435 Identities=29% Similarity=0.433 Sum_probs=334.6
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCC----CEEEEEeCCCCCC----C----C----CCCCCceEEecCCCCCCCc
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKG----FSITIIHTNFNSP----N----P----SNYPHFSFNSISESLWESE 76 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG----h~Vt~~~~~~~~~----~----~----~~~~~~~~~~~~~~~~~~~ 76 (458)
.|.||+++|++++||++|++.||+.|+.+| +.|||++++.+.. . . ....++.+..+|++.++..
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 567999999999999999999999999997 7999999875421 0 0 0112588999997542211
Q ss_pred cCcccHHHHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHH
Q 012678 77 VSTENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQI 156 (458)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 156 (458)
..+...++..+...+...+.+.+.++. .+++|||+|.+..|+..+|+++|||++.++++++..++.+.+.+.
T Consensus 82 --~e~~~~~~~~~~~~~~~~l~~~L~~l~------~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 153 (480)
T PLN00164 82 --AAGVEEFISRYIQLHAPHVRAAIAGLS------CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPA 153 (480)
T ss_pred --cccHHHHHHHHHHhhhHHHHHHHHhcC------CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhh
Confidence 112334454455566666666665541 357999999999999999999999999999999998887776543
Q ss_pred HHHhcCCCccCCCCccccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcC---
Q 012678 157 LLEKGYLAEQDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDF--- 233 (458)
Q Consensus 157 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~--- 233 (458)
.....-.+.........+|+++.++..+++...........+.+....+....++++++||+.+||+..+..++...
T Consensus 154 ~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 233 (480)
T PLN00164 154 LDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTP 233 (480)
T ss_pred hcccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccc
Confidence 21110001111011124788888888888864433332333444444455678889999999999999998887642
Q ss_pred ---CCCccccCCccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCC
Q 012678 234 ---PIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPG 310 (458)
Q Consensus 234 ---~~pv~~vGpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 310 (458)
.++++.|||+...... ....+.++++.+|||+++.+++|||||||....+.+++.+++.+|+..+++|||+++..
T Consensus 234 ~~~~~~v~~vGPl~~~~~~--~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~ 311 (480)
T PLN00164 234 GRPAPTVYPIGPVISLAFT--PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGP 311 (480)
T ss_pred cCCCCceEEeCCCcccccc--CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 1469999999743211 01123445689999999889999999999988999999999999999999999999853
Q ss_pred CCCC------CcccCCCchhHHHhhcCCccee-eccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhh
Q 012678 311 LVPG------VEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLV 383 (458)
Q Consensus 311 ~~~~------~~~~~~l~~~~~~~~~~~~~~~-~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~ 383 (458)
...+ .+....+|+++.++..+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 312 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~ 391 (480)
T PLN00164 312 PAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHL 391 (480)
T ss_pred cccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchh
Confidence 2110 0111248899999998888877 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcceecCC------cccHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 384 NARYVSHVWRVGLHLER------KFERREIETAIRRVTVEA--EGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 384 na~~v~~~~G~G~~l~~------~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
||+++.+.+|+|+.+.. .++.++|.++|+++|.++ +++.+|++|+++++++++++.+|||+++++++|++.+
T Consensus 392 Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~ 471 (480)
T PLN00164 392 NAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREI 471 (480)
T ss_pred HHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99887544799999852 268999999999999763 3688999999999999999999999999999999998
Q ss_pred hc
Q 012678 456 LS 457 (458)
Q Consensus 456 ~~ 457 (458)
.+
T Consensus 472 ~~ 473 (480)
T PLN00164 472 RH 473 (480)
T ss_pred Hh
Confidence 64
No 13
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.1e-63 Score=476.51 Aligned_cols=426 Identities=29% Similarity=0.472 Sum_probs=333.4
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHh-CCCEEEEEeCCCCC-CC-CC---CCCCceEEecCCCCCCCccC-cccHHHH
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYS-KGFSITIIHTNFNS-PN-PS---NYPHFSFNSISESLWESEVS-TENAISL 85 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~-~~-~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 85 (458)
.+.||+++|++++||++|++.||+.|+. +|+.|||++++.+. .. .. ..++++++.++++++++.+. ..+....
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~ 81 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNR 81 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHH
Confidence 3459999999999999999999999996 69999999997542 11 11 11369999999888765422 3345556
Q ss_pred HHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCc
Q 012678 86 LTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAE 165 (458)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 165 (458)
+..+...+...+.++++++.... .+++|||+|.+..|+..+|+++|||++.+++++++.++.+.+... .
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~~---~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~----~---- 150 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNGD---SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST----G---- 150 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhccC---CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc----c----
Confidence 66677788888888888765321 245999999999999999999999999999999998877665321 0
Q ss_pred cCCCCccccCCCCCCCCCCCCCcccCC--CchHHHHHHHHHhhcc--CccEEEEcChhhhhHHHHHHhhhcCCCCccccC
Q 012678 166 QDSQLEKPVTELPPLRVKDIPIIVTHD--TRNFHQLISAVVSKTK--ACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIG 241 (458)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vG 241 (458)
......+|+++.++.++++...... ...+.+.+....+... .++++++|||.+||+..+..++. .|++.||
T Consensus 151 --~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v~~VG 225 (455)
T PLN02152 151 --NNSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEMVAVG 225 (455)
T ss_pred --CCCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCEEEEc
Confidence 0112347888878888887644221 2233444444444332 34689999999999999888754 3799999
Q ss_pred Ccccccc--ccC-CC--c-ccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCC--
Q 012678 242 PFHKYCL--ASS-SS--L-LSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVP-- 313 (458)
Q Consensus 242 pl~~~~~--~~~-~~--~-~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-- 313 (458)
|+..... ... .. . .+.+.++.+|||+++.++||||||||...++.+++.+++.+|+..+.+|||+++.....
T Consensus 226 PL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~ 305 (455)
T PLN02152 226 PLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREA 305 (455)
T ss_pred ccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 9975321 100 00 1 12234689999998888999999999999999999999999999999999999753210
Q ss_pred ---CCc-ccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHH
Q 012678 314 ---GVE-WLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVS 389 (458)
Q Consensus 314 ---~~~-~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~ 389 (458)
..+ ....+|++|.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||++++
T Consensus 306 ~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~ 385 (455)
T PLN02152 306 KIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLE 385 (455)
T ss_pred ccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHH
Confidence 000 0112578999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcceecC--C--cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 390 HVWRVGLHLE--R--KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 390 ~~~G~G~~l~--~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
+.+|+|+.+. . .++.++|+++|+++|+++ ...||++|+++++.++++..+|||+++++++|+++|
T Consensus 386 ~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 386 EIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 7557776664 2 369999999999999752 357999999999999999999999999999999987
No 14
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.3e-63 Score=485.08 Aligned_cols=432 Identities=28% Similarity=0.461 Sum_probs=329.5
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCC--CEEEEEeCCCCCCC-------C---CC--CCCceEEecCCCCCCCccCc
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKG--FSITIIHTNFNSPN-------P---SN--YPHFSFNSISESLWESEVST 79 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~-------~---~~--~~~~~~~~~~~~~~~~~~~~ 79 (458)
|+||+++|++++||++|++.||+.|+.+| ..|||++++.+... . .. .++++++.+|++.++... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~ 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTE-D 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCccc-c
Confidence 68999999999999999999999999998 88999999866321 1 11 235899999876542211 1
Q ss_pred ccHHHHHHHHHHhcChhHHHHHHHHhhCCCC-CCCe-eEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHH
Q 012678 80 ENAISLLTVLNDKCVVPFQDCLAKLISNGDQ-EEPV-TCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQIL 157 (458)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~~~p-DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 157 (458)
. .+..+...+...+.+.++++...... ..+| +|||+|.+..|+..+|+++|||++.+++++++.++.+.+.+..
T Consensus 81 ~----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~ 156 (481)
T PLN02554 81 P----TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQML 156 (481)
T ss_pred h----HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhh
Confidence 1 22223344555666666666532100 0134 8999999999999999999999999999999998887775443
Q ss_pred HHhcCCCc---cCCCCccccCCCC-CCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhc-
Q 012678 158 LEKGYLAE---QDSQLEKPVTELP-PLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKD- 232 (458)
Q Consensus 158 ~~~~~~p~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~- 232 (458)
....-.+. ........+|+++ +++..+++..... ..+.+.+.+.......++++++||+.++|......+...
T Consensus 157 ~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~ 234 (481)
T PLN02554 157 YDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS--KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSS 234 (481)
T ss_pred ccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC--HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcc
Confidence 21110111 1111123478874 6777777754322 233444445556677889999999999999888777652
Q ss_pred -CCCCccccCCccc-cccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCC
Q 012678 233 -FPIPMFPIGPFHK-YCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPG 310 (458)
Q Consensus 233 -~~~pv~~vGpl~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 310 (458)
..++++.|||+.. ..+. .....+.++++.+||++++.+++|||||||+...+.+++.+++.+|+..+++|||+++..
T Consensus 235 ~~~~~v~~vGpl~~~~~~~-~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~ 313 (481)
T PLN02554 235 GDLPPVYPVGPVLHLENSG-DDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRA 313 (481)
T ss_pred cCCCCEEEeCCCccccccc-cccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 2357999999943 2221 000012234589999998888999999999988899999999999999999999999753
Q ss_pred CCC------C--CcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchh
Q 012678 311 LVP------G--VEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQL 382 (458)
Q Consensus 311 ~~~------~--~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 382 (458)
... + .+....+|++|.++.++|+++++|+||.+||.|+++++|||||||||++||+++|||||++|+++||+
T Consensus 314 ~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~ 393 (481)
T PLN02554 314 SPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQK 393 (481)
T ss_pred cccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccch
Confidence 110 0 00012368999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHH-HHHHHHhcceecC------------CcccHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHhhCCChHHHH
Q 012678 383 VNAR-YVSHVWRVGLHLE------------RKFERREIETAIRRVTV-EAEGQEMRERIMHLKEKLELSLLEAGSSYQSL 448 (458)
Q Consensus 383 ~na~-~v~~~~G~G~~l~------------~~~~~~~l~~~i~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 448 (458)
.||+ ++++ +|+|+.++ ..++.++|.++|+++|+ | ++||++|+++++++++++.+|||+++++
T Consensus 394 ~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gGss~~~l 469 (481)
T PLN02554 394 FNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGGSSHTAL 469 (481)
T ss_pred hhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9995 5677 79999985 15899999999999997 6 8999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 012678 449 ERLVDHILS 457 (458)
Q Consensus 449 ~~~~~~~~~ 457 (458)
++|++++.+
T Consensus 470 ~~lv~~~~~ 478 (481)
T PLN02554 470 KKFIQDVTK 478 (481)
T ss_pred HHHHHHHHh
Confidence 999999864
No 15
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.4e-63 Score=477.14 Aligned_cols=424 Identities=28% Similarity=0.471 Sum_probs=323.4
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCC--CEEEE--EeCCCCCCC--------CCCCCCceEEecCCCCCCCc--cC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKG--FSITI--IHTNFNSPN--------PSNYPHFSFNSISESLWESE--VS 78 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~ 78 (458)
.+-||+++|++++||++|++.||+.|+.+| +.||+ +.++.+... ....++++++.+|++.+.+. ..
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 345999999999999999999999999998 55665 444432211 11124699999997653222 22
Q ss_pred cccHHHHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHH
Q 012678 79 TENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILL 158 (458)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 158 (458)
..+....+..+...+...+.+.+.++... .+++|||+|.+..|+..+|+++|||++.+++++++.++.+.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~ 157 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSRN----FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTID 157 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCCC----CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcc
Confidence 22233344444556667777777766321 24599999999999999999999999999999999888877654321
Q ss_pred HhcCCCccC-CC-CccccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCC-C
Q 012678 159 EKGYLAEQD-SQ-LEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFP-I 235 (458)
Q Consensus 159 ~~~~~p~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~ 235 (458)
.. .+... .. ....+|+++.++.++++...........+.+.........++++++|||.+||...+..++..+. +
T Consensus 158 ~~--~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~ 235 (451)
T PLN03004 158 ET--TPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFR 235 (451)
T ss_pred cc--ccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCC
Confidence 11 11100 11 11347888888888888654333333445555555666778899999999999999998877543 5
Q ss_pred CccccCCccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCC
Q 012678 236 PMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGV 315 (458)
Q Consensus 236 pv~~vGpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 315 (458)
|++.|||+...... .......+.++.+|||+++++++|||||||....+.+++.+++.+|+..+++|+|+++.......
T Consensus 236 ~v~~vGPl~~~~~~-~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~ 314 (451)
T PLN03004 236 NIYPIGPLIVNGRI-EDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEK 314 (451)
T ss_pred CEEEEeeeccCccc-cccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccc
Confidence 79999999743211 00111123458899999888999999999999899999999999999999999999985321000
Q ss_pred c--ccC-CCchhHHHhhcCCcce-eeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHH
Q 012678 316 E--WLE-PLPKGFLEMLDGRGHI-VKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHV 391 (458)
Q Consensus 316 ~--~~~-~l~~~~~~~~~~~~~~-~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 391 (458)
+ ... .+|++|++|..+++.+ .+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.
T Consensus 315 ~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~ 394 (451)
T PLN03004 315 TELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDE 394 (451)
T ss_pred cccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHH
Confidence 0 012 3889999998876655 59999999999999999999999999999999999999999999999999999754
Q ss_pred HhcceecCC----cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHH
Q 012678 392 WRVGLHLER----KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQ 446 (458)
Q Consensus 392 ~G~G~~l~~----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~ 446 (458)
+|+|+.++. .++.++|+++|+++|++ ++||+++++++++.+.|+.+|||+++
T Consensus 395 ~g~g~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 395 IKIAISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hCceEEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 799999964 37999999999999998 89999999999999999999999875
No 16
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3e-63 Score=479.11 Aligned_cols=440 Identities=26% Similarity=0.466 Sum_probs=322.9
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC------CC--CCceEEecC-----CCCCCCccC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPS------NY--PHFSFNSIS-----ESLWESEVS 78 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~------~~--~~~~~~~~~-----~~~~~~~~~ 78 (458)
.++.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... .. ..++++.+| +++|++.+.
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~ 85 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCEN 85 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccc
Confidence 34579999999999999999999999999999999999987643211 11 138888887 577765433
Q ss_pred cccH--HHHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHH
Q 012678 79 TENA--ISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQI 156 (458)
Q Consensus 79 ~~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 156 (458)
..+. ..++..+.... ..+...++++++... .+|++||+|.+..|+..+|+++|||++.+++++++....+..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~-~~l~~~l~~lL~~~~--~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~ 162 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAV-DKLQQPLERFLEQAK--PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL 162 (491)
T ss_pred cccCCcHHHHHHHHHHH-HHhHHHHHHHHHhcC--CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH
Confidence 2221 12222221211 123333444443222 468999999999999999999999999999998887765443211
Q ss_pred HHHhcCCCccCCCCccccCCCCC---CCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcC
Q 012678 157 LLEKGYLAEQDSQLEKPVTELPP---LRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDF 233 (458)
Q Consensus 157 ~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 233 (458)
..+ ..+.........+|+++. ++..+++...... .....+.....+....++++++||+.+||+..+..++..+
T Consensus 163 ~~~--~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~-~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~ 239 (491)
T PLN02534 163 HNA--HLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL-PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAI 239 (491)
T ss_pred hcc--cccCCCCCceeecCCCCccccccHHHCChhhcCc-ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhc
Confidence 111 111111112234677663 5666666432111 1122222233333345778999999999999999988766
Q ss_pred CCCccccCCccccccc---c--CCCccc-CccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEE
Q 012678 234 PIPMFPIGPFHKYCLA---S--SSSLLS-QDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVV 307 (458)
Q Consensus 234 ~~pv~~vGpl~~~~~~---~--~~~~~~-~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 307 (458)
+++++.|||+...... . +..... .++++.+|||+++.++||||||||......+++.+++.+|+..+++|+|++
T Consensus 240 ~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~ 319 (491)
T PLN02534 240 KKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVI 319 (491)
T ss_pred CCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 6789999999753211 0 000001 223588999999889999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccCCCchhHHHhhcCCcce-eeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHH
Q 012678 308 RPGLVPGVEWLEPLPKGFLEMLDGRGHI-VKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNAR 386 (458)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 386 (458)
+............+|++|.++..+++.+ .+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 320 r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~ 399 (491)
T PLN02534 320 KTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEK 399 (491)
T ss_pred ecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHH
Confidence 8432111000113688998886655554 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcceecC-------------C-cccHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHH
Q 012678 387 YVSHVWRVGLHLE-------------R-KFERREIETAIRRVTV--EAEGQEMRERIMHLKEKLELSLLEAGSSYQSLER 450 (458)
Q Consensus 387 ~v~~~~G~G~~l~-------------~-~~~~~~l~~~i~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~ 450 (458)
++.+.||+|+.+. . -++.++|.++|+++|. +++++.+|+||+++++++++++.+|||+++++++
T Consensus 400 ~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~ 479 (491)
T PLN02534 400 LIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSI 479 (491)
T ss_pred HHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9986689999773 1 2789999999999997 3446899999999999999999999999999999
Q ss_pred HHHHHhc
Q 012678 451 LVDHILS 457 (458)
Q Consensus 451 ~~~~~~~ 457 (458)
|+++|.+
T Consensus 480 fv~~i~~ 486 (491)
T PLN02534 480 LIQDVLK 486 (491)
T ss_pred HHHHHHH
Confidence 9999875
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=5.2e-63 Score=483.29 Aligned_cols=436 Identities=29% Similarity=0.476 Sum_probs=322.9
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC--------CC----CceEEecC---CCCCCCcc
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN--------YP----HFSFNSIS---ESLWESEV 77 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~--------~~----~~~~~~~~---~~~~~~~~ 77 (458)
++.||+++|+|++||++|++.||++|+.|||+|||++++.+....+. .+ .+....+| ++++++.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 35799999999999999999999999999999999999866432111 11 34445566 35665432
Q ss_pred Ccc--------cHHHHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHH
Q 012678 78 STE--------NAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFL 149 (458)
Q Consensus 78 ~~~--------~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 149 (458)
... +...++..+. .....+.+.++++++. .+||+||+|.+..|+..+|+++|||++.+++++++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~----~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLET----TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred cccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhc----CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 221 1222333332 3334556666666654 57999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHhcCCCccCCCCccccCCCC---CCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHH
Q 012678 150 AFSAFQILLEKGYLAEQDSQLEKPVTELP---PLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTEL 226 (458)
Q Consensus 150 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 226 (458)
.........+....+. ......+|+++ .++...++.. .....+.+.+....+...+++.+++||+.++|....
T Consensus 159 ~~~~~~~~~~~~~~~~--~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~ 234 (482)
T PLN03007 159 ASYCIRVHKPQKKVAS--SSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYA 234 (482)
T ss_pred HHHHHHhcccccccCC--CCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHH
Confidence 5554322111111110 00112256654 2333333321 122234455556666678889999999999999888
Q ss_pred HHhhhcCCCCccccCCcccccccc-----CCCcc-cCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCC
Q 012678 227 TRLHKDFPIPMFPIGPFHKYCLAS-----SSSLL-SQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSR 300 (458)
Q Consensus 227 ~~~~~~~~~pv~~vGpl~~~~~~~-----~~~~~-~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~ 300 (458)
..++.....++++|||+....... +.... ..++++.+||++++++++|||||||....+.+.+.+++.+|+..+
T Consensus 235 ~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~ 314 (482)
T PLN03007 235 DFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSG 314 (482)
T ss_pred HHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCC
Confidence 877776566799999986532210 00011 123458899999888999999999998888899999999999999
Q ss_pred CceEEEEcCCCCCCCcccCCCchhHHHhhcCCcc-eeeccChhhhhcCCCccccccccCchhHHHHHhhCCccccccccc
Q 012678 301 VPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGH-IVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFG 379 (458)
Q Consensus 301 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 379 (458)
++|||+++...... +..+.+|++|.++..+++. +.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 315 ~~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~ 393 (482)
T PLN03007 315 QNFIWVVRKNENQG-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGA 393 (482)
T ss_pred CCEEEEEecCCccc-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchh
Confidence 99999998642111 1123589999988765554 559999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhcceec--------CC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHH
Q 012678 380 DQLVNARYVSHVWRVGLHL--------ER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLER 450 (458)
Q Consensus 380 DQ~~na~~v~~~~G~G~~l--------~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~ 450 (458)
||+.||+++++.+++|+.+ +. .++.++|+++|+++|+++++++||++|+++++.+++|+.+|||+++++++
T Consensus 394 DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~ 473 (482)
T PLN03007 394 EQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNK 473 (482)
T ss_pred hhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999987434555554 33 58999999999999998556699999999999999999999999999999
Q ss_pred HHHHHhcC
Q 012678 451 LVDHILSF 458 (458)
Q Consensus 451 ~~~~~~~~ 458 (458)
|++.+.++
T Consensus 474 ~v~~~~~~ 481 (482)
T PLN03007 474 FMEELNSR 481 (482)
T ss_pred HHHHHHhc
Confidence 99999764
No 18
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=6e-63 Score=473.75 Aligned_cols=418 Identities=22% Similarity=0.348 Sum_probs=313.1
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCC----CCceEEec--C--CCCCCCccCcccHH
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNY----PHFSFNSI--S--ESLWESEVSTENAI 83 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~----~~~~~~~~--~--~~~~~~~~~~~~~~ 83 (458)
+.+.||+++|++++||++|++.||+.|+++||+|||++++.+....... .++.+..+ + ++++++.+...+..
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~ 81 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIP 81 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchh
Confidence 4678999999999999999999999999999999999987554332211 24555544 3 45665544332332
Q ss_pred HHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCC
Q 012678 84 SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYL 163 (458)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (458)
..+..+.......+.+.++++++. .++|+||+| +..|+..+|+.+|||++.++++++.... +.+.+. ...
T Consensus 82 ~~l~~~~~~~~~~~~~~l~~~L~~----~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~~~ 151 (442)
T PLN02208 82 ISMDNLLSEALDLTRDQVEAAVRA----LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----GKL 151 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----ccc
Confidence 222222222223444555555543 568999999 5789999999999999999999887543 322110 000
Q ss_pred CccCCCCccccCCCCC----CCCCCCCCcccCCCchHHH-HHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCcc
Q 012678 164 AEQDSQLEKPVTELPP----LRVKDIPIIVTHDTRNFHQ-LISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMF 238 (458)
Q Consensus 164 p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~ 238 (458)
...+|+++. ++..+++.. .......+ ......+....++++++||+.+||+..+..+...+.++++
T Consensus 152 -------~~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~ 222 (442)
T PLN02208 152 -------GVPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVL 222 (442)
T ss_pred -------CCCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEE
Confidence 011355543 344444432 11112222 2223334567889999999999999999888876667799
Q ss_pred ccCCccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCccc
Q 012678 239 PIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWL 318 (458)
Q Consensus 239 ~vGpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 318 (458)
.|||++..... ...+ ++++.+|||+++++++|||||||...++.+++.+++.+++..+.+++|++..+.... ...
T Consensus 223 ~vGpl~~~~~~--~~~~--~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~-~~~ 297 (442)
T PLN02208 223 LTGPMFPEPDT--SKPL--EEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSS-TVQ 297 (442)
T ss_pred EEeecccCcCC--CCCC--HHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccc-chh
Confidence 99999865321 0122 345899999988899999999999988999999999988888888888887532111 112
Q ss_pred CCCchhHHHhhcCCccee-eccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhccee
Q 012678 319 EPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLH 397 (458)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~-~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~ 397 (458)
+.+|++|+++..+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++.+.+|+|+.
T Consensus 298 ~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~ 377 (442)
T PLN02208 298 EGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVE 377 (442)
T ss_pred hhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEE
Confidence 458999999988766666 9999999999999999999999999999999999999999999999999987654799999
Q ss_pred cCC-c---ccHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 398 LER-K---FERREIETAIRRVTVEA--EGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 398 l~~-~---~~~~~l~~~i~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
++. + ++.++|+++|+++|+++ +++.+|++++++++++. ++||+++++++|++.+++
T Consensus 378 ~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 378 VSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQE 439 (442)
T ss_pred eccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHH
Confidence 976 4 89999999999999763 36789999999999986 689999999999999875
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-62 Score=468.38 Aligned_cols=415 Identities=22% Similarity=0.350 Sum_probs=316.3
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC---CC-C--ceEEecC--CCCCCCccCcccHH-
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN---YP-H--FSFNSIS--ESLWESEVSTENAI- 83 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~---~~-~--~~~~~~~--~~~~~~~~~~~~~~- 83 (458)
.++||+++|++++||++|++.||+.|+.+|+.|||++++.+...... .+ + +.+..+| ++++++.+...+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~ 83 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPV 83 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCCh
Confidence 46899999999999999999999999999999999999876432221 11 2 6677777 67766543322211
Q ss_pred ---HHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHh
Q 012678 84 ---SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEK 160 (458)
Q Consensus 84 ---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 160 (458)
..+......+...+ +++++. .+||+||+|. ..|+..+|+++|||++.++++++..++.+.. + .
T Consensus 84 ~~~~~~~~a~~~~~~~~----~~~l~~----~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~ 149 (453)
T PLN02764 84 TSADLLMSAMDLTRDQV----EVVVRA----VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----G 149 (453)
T ss_pred hHHHHHHHHHHHhHHHH----HHHHHh----CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----c
Confidence 11222222333334 444432 3589999995 8899999999999999999999987776542 0 0
Q ss_pred cCCCccCCCCccccCCCC----CCCCCCCCCccc----CCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhc
Q 012678 161 GYLAEQDSQLEKPVTELP----PLRVKDIPIIVT----HDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKD 232 (458)
Q Consensus 161 ~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 232 (458)
...+ ..+|+++ .++.++++.... .....+...+....+....++++++||+.+||+..+..++..
T Consensus 150 ~~~~-------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~ 222 (453)
T PLN02764 150 GELG-------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKH 222 (453)
T ss_pred ccCC-------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhh
Confidence 0100 1124554 244444442110 111123344445545667888999999999999999888764
Q ss_pred CCCCccccCCccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCC
Q 012678 233 FPIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLV 312 (458)
Q Consensus 233 ~~~pv~~vGpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 312 (458)
.++|++.|||+...... ....+.++.+|||++++++||||||||....+.+++.++..+|+..+.+|+|+++....
T Consensus 223 ~~~~v~~VGPL~~~~~~----~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~ 298 (453)
T PLN02764 223 CRKKVLLTGPVFPEPDK----TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRG 298 (453)
T ss_pred cCCcEEEeccCccCccc----cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 44679999999754311 01123458999999999999999999999999999999999999999999999985322
Q ss_pred CCCcccCCCchhHHHhhcCCccee-eccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHH
Q 012678 313 PGVEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHV 391 (458)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~-~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 391 (458)
.. +..+.+|++|+++..+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.
T Consensus 299 ~~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~ 377 (453)
T PLN02764 299 SS-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDE 377 (453)
T ss_pred Cc-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHH
Confidence 11 112459999999999888877 9999999999999999999999999999999999999999999999999999644
Q ss_pred HhcceecCC----cccHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 392 WRVGLHLER----KFERREIETAIRRVTVEA--EGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 392 ~G~G~~l~~----~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
+|+|+.+.. .++.++|+++|+++|+++ +++.+|+++++++++++ ++||+++++++|++++.+
T Consensus 378 ~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv~~~~~ 445 (453)
T PLN02764 378 LKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFIESLQD 445 (453)
T ss_pred hceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHH
Confidence 799998743 489999999999999873 36789999999999997 799999999999999875
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.7e-62 Score=475.12 Aligned_cols=439 Identities=26% Similarity=0.403 Sum_probs=326.6
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCC---CEEEEEeCCCCCC---------CCCCCCCceEEecCCCCCC-CccC-
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKG---FSITIIHTNFNSP---------NPSNYPHFSFNSISESLWE-SEVS- 78 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG---h~Vt~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~- 78 (458)
++.||+++|++++||++|++.||+.|+.+| +.||++++..+.. .....++++++.+|+...+ +.+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 456999999999999999999999999998 4567776543211 0111246999999865421 1110
Q ss_pred cccHHHHHHHHHHhcChhHHHHHHHHhhCCC--CCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHH
Q 012678 79 TENAISLLTVLNDKCVVPFQDCLAKLISNGD--QEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQI 156 (458)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 156 (458)
.......+..+...+...+.+.++++..... +..+++|||+|.+.+|+..+|+++|||++.+++++++.++.+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 1122223334445566667777776653210 00145999999999999999999999999999999988877665443
Q ss_pred HHHhcCCC--ccCCCCccccCCC-CCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcC
Q 012678 157 LLEKGYLA--EQDSQLEKPVTEL-PPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDF 233 (458)
Q Consensus 157 ~~~~~~~p--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 233 (458)
........ .........+|++ +.++..+++...... ...+.+....+....++++++|||.+||+..+..++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~ 239 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLP 239 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhc
Confidence 21110000 0000111347887 357777776432221 123333444455678899999999999999998886531
Q ss_pred --CCCccccCCccccccccCCCccc--CccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcC
Q 012678 234 --PIPMFPIGPFHKYCLASSSSLLS--QDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRP 309 (458)
Q Consensus 234 --~~pv~~vGpl~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 309 (458)
.+++++|||++...... ...++ .+.++.+||++++.+++|||||||+...+.+++.+++.+|+..+++|||+++.
T Consensus 240 ~~~p~v~~vGpl~~~~~~~-~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~ 318 (475)
T PLN02167 240 ENYPPVYPVGPILSLKDRT-SPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRT 318 (475)
T ss_pred ccCCeeEEecccccccccc-CCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEec
Confidence 14699999998643210 01111 22458999999888999999999998889999999999999999999999975
Q ss_pred CCCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHH-H
Q 012678 310 GLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARY-V 388 (458)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~-v 388 (458)
......+....+|++|.+|+.+++++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++ +
T Consensus 319 ~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~ 398 (475)
T PLN02167 319 NPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMV 398 (475)
T ss_pred CcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 321110112358999999999999999999999999999999999999999999999999999999999999999977 5
Q ss_pred HHHHhcceecCC--------cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 389 SHVWRVGLHLER--------KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 389 ~~~~G~G~~l~~--------~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
++ +|+|+.+.. .++.++|.++|+++|+++ +.||++|+++++++++++.+|||+++++++|++.|..
T Consensus 399 ~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 399 KE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred HH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 66 799998852 369999999999999763 5899999999999999999999999999999999863
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.8e-62 Score=468.08 Aligned_cols=418 Identities=21% Similarity=0.307 Sum_probs=311.1
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC----CCCceEEec--C--CCCCCCccCcccHH
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN----YPHFSFNSI--S--ESLWESEVSTENAI 83 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~----~~~~~~~~~--~--~~~~~~~~~~~~~~ 83 (458)
..+.||+++|++++||++|++.||+.|+++|++|||++++.+...... .+++.+..+ | ++++++.+...++.
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~ 81 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLP 81 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccch
Confidence 346799999999999999999999999999999999999865433211 124777544 3 56766543332222
Q ss_pred HHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCC
Q 012678 84 SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYL 163 (458)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (458)
.............+...++++++. .+||+||+|. ..|+..+|+++|||++.++++++...+.+.+.. ....
T Consensus 82 ~~~~~~~~~a~~~l~~~l~~~L~~----~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~--~~~~-- 152 (446)
T PLN00414 82 NSTKKPIFDAMDLLRDQIEAKVRA----LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR--AELG-- 152 (446)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc----CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH--hhcC--
Confidence 111111122223444555555543 4689999995 889999999999999999999998877665411 0000
Q ss_pred CccCCCCccccCCCCC----CCCCCC--CCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCc
Q 012678 164 AEQDSQLEKPVTELPP----LRVKDI--PIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPM 237 (458)
Q Consensus 164 p~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv 237 (458)
..+|+++. ++..+. +..+ .. ....+.+..+....++++++|||.+||+..+..++..+++|+
T Consensus 153 --------~~~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v 220 (446)
T PLN00414 153 --------FPPPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKV 220 (446)
T ss_pred --------CCCCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCe
Confidence 01233332 111111 1111 11 123344444566778999999999999999998887556679
Q ss_pred cccCCccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcc
Q 012678 238 FPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEW 317 (458)
Q Consensus 238 ~~vGpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 317 (458)
+.|||+...... ......++++.+|||+++.++||||||||....+.+++.++..+|+..+.+|+|++......+ +.
T Consensus 221 ~~VGPl~~~~~~--~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~-~~ 297 (446)
T PLN00414 221 LLTGPMLPEPQN--KSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSS-TV 297 (446)
T ss_pred EEEcccCCCccc--ccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcc-cc
Confidence 999999754321 001112245789999999999999999999999999999999999999999999997642111 11
Q ss_pred cCCCchhHHHhhcCCccee-eccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcce
Q 012678 318 LEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGL 396 (458)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~-~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 396 (458)
.+.+|++|++++++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++.+.+|+|+
T Consensus 298 ~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~ 377 (446)
T PLN00414 298 QEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSV 377 (446)
T ss_pred hhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEE
Confidence 2358999999999999887 999999999999999999999999999999999999999999999999999964479999
Q ss_pred ecCC----cccHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 397 HLER----KFERREIETAIRRVTVEA--EGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 397 ~l~~----~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
.+.. .++.++|+++++++|+++ .++.+|++++++++.+. ..|++...+++|++.+++
T Consensus 378 ~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~----~~gg~ss~l~~~v~~~~~ 440 (446)
T PLN00414 378 KVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV----SPGLLSGYADKFVEALEN 440 (446)
T ss_pred EeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHH
Confidence 9964 389999999999999763 25789999999999975 344433448999999875
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=9.2e-53 Score=411.51 Aligned_cols=406 Identities=18% Similarity=0.195 Sum_probs=281.9
Q ss_pred CCCEEEEE-cCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCC-CCCCCCCCceEEecCCCCCC--C-ccCc------c-
Q 012678 13 KGRRVILF-PLPLQGHINPMLQLASILYSKGFSITIIHTNFNS-PNPSNYPHFSFNSISESLWE--S-EVST------E- 80 (458)
Q Consensus 13 ~~~~il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~-~~~~------~- 80 (458)
.+.||+++ |.++.||+.-+..|+++|++|||+||++++.... ....+..+++.+.++..... . .... .
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGV 98 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhh
Confidence 45678765 8899999999999999999999999999875211 11112245666655411110 0 0000 0
Q ss_pred --cH----HHHHHHHHHhcChhHHH-HHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHc-CCCeEEEecchHHHHHHHH
Q 012678 81 --NA----ISLLTVLNDKCVVPFQD-CLAKLISNGDQEEPVTCLITDAIWHFAQTVADTL-RLPRIVLRTSSISSFLAFS 152 (458)
Q Consensus 81 --~~----~~~~~~~~~~~~~~l~~-~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~~~~~ 152 (458)
+. ...+..+...|...+.+ .+.++++..+ .++|+||+|.+..|++.+|+.+ ++|.|.++++........
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~--~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~- 175 (507)
T PHA03392 99 VADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN--NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFE- 175 (507)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC--CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHH-
Confidence 00 11122334556555543 4445553111 6799999999999999999999 999988888655433322
Q ss_pred HHH-HHHHhcCCCccC------CCCccccCCCCCCCCCCCC--CcccCCCchHHHHHH----HHHhhccCccEEEEcChh
Q 012678 153 AFQ-ILLEKGYLAEQD------SQLEKPVTELPPLRVKDIP--IIVTHDTRNFHQLIS----AVVSKTKACSGLIWNSFE 219 (458)
Q Consensus 153 ~~~-~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~s~~ 219 (458)
..+ .+.+++|+|... ..++.++.++....+..+. ...........+.++ .+.+..++.+.+|+|+.+
T Consensus 176 ~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~ 255 (507)
T PHA03392 176 TMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHP 255 (507)
T ss_pred hhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCc
Confidence 233 566677777633 2233333333210000000 000011111122222 134555778899999999
Q ss_pred hhhHHHHHHhhhcCCCCccccCCccccccccCCCcccCccccchhhccCCCCcEEEEEcCcccc---CCHHHHHHHHHHH
Q 012678 220 DLEQTELTRLHKDFPIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVV---VNVTEFLEIAWGL 296 (458)
Q Consensus 220 ~le~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~---~~~~~~~~~~~al 296 (458)
.++++. .+++++++|||+..+... ..+++ +++.+|++.. ++++|||||||... .+.+.+..+++|+
T Consensus 256 ~~d~~r------p~~p~v~~vGgi~~~~~~--~~~l~--~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~ 324 (507)
T PHA03392 256 VFDNNR------PVPPSVQYLGGLHLHKKP--PQPLD--DYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLLRTF 324 (507)
T ss_pred cccCCC------CCCCCeeeecccccCCCC--CCCCC--HHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHHHHH
Confidence 999863 345669999999875321 12334 4488999875 46899999999864 5778899999999
Q ss_pred HhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccc
Q 012678 297 ANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQP 376 (458)
Q Consensus 297 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P 376 (458)
++.++++||++++... ...+|+ |+++++|+||.+||+|+.+++||||||+||++||+++|||||++|
T Consensus 325 ~~l~~~viw~~~~~~~-----~~~~p~--------Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP 391 (507)
T PHA03392 325 KKLPYNVLWKYDGEVE-----AINLPA--------NVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLP 391 (507)
T ss_pred HhCCCeEEEEECCCcC-----cccCCC--------ceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECC
Confidence 9999999999975431 012444 448999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHhcceecCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH
Q 012678 377 CFGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERL 451 (458)
Q Consensus 377 ~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~ 451 (458)
+++||+.||+|+++ +|+|+.++. ++++++|.++|+++++| ++||++|+++++.+++. ...+.++++.-+
T Consensus 392 ~~~DQ~~Na~rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~~--p~~~~~~av~~i 461 (507)
T PHA03392 392 MMGDQFYNTNKYVE-LGIGRALDTVTVSAAQLVLAIVDVIEN---PKYRKNLKELRHLIRHQ--PMTPLHKAIWYT 461 (507)
T ss_pred CCccHHHHHHHHHH-cCcEEEeccCCcCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 99999999999999 599999998 89999999999999999 99999999999999952 223455555444
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.1e-55 Score=437.47 Aligned_cols=387 Identities=26% Similarity=0.329 Sum_probs=226.9
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCC-CCCCCceEEecCCCCCCCccC--c------------
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNP-SNYPHFSFNSISESLWESEVS--T------------ 79 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~------------ 79 (458)
.||+++|. ++||+.++..|+++|++|||+||++++....... ....++++..++...+..... .
T Consensus 1 ~kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (500)
T PF00201_consen 1 GKVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESS 79 (500)
T ss_dssp ------------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHC
T ss_pred CEEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhcc
Confidence 47899985 7799999999999999999999999885321111 122456666666433322110 0
Q ss_pred --ccHHHHH-------HHHHHhcChhHHH--HHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHH
Q 012678 80 --ENAISLL-------TVLNDKCVVPFQD--CLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSF 148 (458)
Q Consensus 80 --~~~~~~~-------~~~~~~~~~~l~~--~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 148 (458)
......+ ......|...+.+ +++.+.. .++|++|+|.+..|+..+|+.+++|.+.+.++.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~-----~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~ 154 (500)
T PF00201_consen 80 FANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS-----EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYD 154 (500)
T ss_dssp CHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH-----HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----hccccceEeeccchhHHHHHHhcCCeEEEecccccch
Confidence 0011111 1223444333322 2223333 4699999999999999999999999987544322111
Q ss_pred HHHHHHHHHHHhcCCCccCCC------CccccCCCCC-CCCCC----CCCcccCCCchHHHHHHHHHhhccCccEEEEcC
Q 012678 149 LAFSAFQILLEKGYLAEQDSQ------LEKPVTELPP-LRVKD----IPIIVTHDTRNFHQLISAVVSKTKACSGLIWNS 217 (458)
Q Consensus 149 ~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 217 (458)
......+.+.+++|+|..... +..++.+... +.... +..............-....+...+++.+++|+
T Consensus 155 ~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ns 234 (500)
T PF00201_consen 155 LSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVLINS 234 (500)
T ss_dssp CTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCCSST
T ss_pred hhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHHHhhhc
Confidence 111111223344555543221 1222222110 00000 000000000000000001112233456678888
Q ss_pred hhhhhHHHHHHhhhcCCCCccccCCccccccccCCCcccCccccchhhccCCCCcEEEEEcCcccc-CCHHHHHHHHHHH
Q 012678 218 FEDLEQTELTRLHKDFPIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVV-VNVTEFLEIAWGL 296 (458)
Q Consensus 218 ~~~le~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~-~~~~~~~~~~~al 296 (458)
.+.++++.+. .+.+++||+++...+. +++. ++.+|++..+++++|||||||... .+.+..+.+++|+
T Consensus 235 ~~~ld~prp~------~p~v~~vGgl~~~~~~----~l~~--~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~ 302 (500)
T PF00201_consen 235 HPSLDFPRPL------LPNVVEVGGLHIKPAK----PLPE--ELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAF 302 (500)
T ss_dssp EEE----HHH------HCTSTTGCGC-S--------TCHH--HHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHH
T ss_pred cccCcCCcch------hhcccccCcccccccc----cccc--ccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHH
Confidence 8888877543 3459999999876553 4444 488999986688999999999986 4555588899999
Q ss_pred HhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccc
Q 012678 297 ANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQP 376 (458)
Q Consensus 297 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P 376 (458)
++.+++|||++.+.. ...+ ++|+++++|+||.+||.|+++++||||||+||+.||+++|||||++|
T Consensus 303 ~~~~~~~iW~~~~~~------~~~l--------~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P 368 (500)
T PF00201_consen 303 ENLPQRFIWKYEGEP------PENL--------PKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIP 368 (500)
T ss_dssp HCSTTEEEEEETCSH------GCHH--------HTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-G
T ss_pred hhCCCcccccccccc------cccc--------cceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCC
Confidence 999999999997632 1123 34558999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHhcceecCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 012678 377 CFGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELS 437 (458)
Q Consensus 377 ~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~ 437 (458)
+++||+.||++++++ |+|+.++. ++|.++|.++|+++++| ++|+++|++++..+++.
T Consensus 369 ~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 369 LFGDQPRNAARVEEK-GVGVVLDKNDLTEEELRAAIREVLEN---PSYKENAKRLSSLFRDR 426 (500)
T ss_dssp CSTTHHHHHHHHHHT-TSEEEEGGGC-SHHHHHHHHHHHHHS---HHHHHHHHHHHHTTT--
T ss_pred CcccCCccceEEEEE-eeEEEEEecCCcHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhcC
Confidence 999999999999995 99999998 99999999999999999 89999999999999864
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.7e-44 Score=350.88 Aligned_cols=373 Identities=18% Similarity=0.184 Sum_probs=241.8
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCccC-----------cccHH
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVS-----------TENAI 83 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 83 (458)
|||+|++.|+.||++|++.||++|++|||+|+|++++........ .|++|..+++........ .....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-AGLEFVPVGGDPDELLASPERNAGLLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-cCCceeeCCCCHHHHHhhhhhcccccccchHHHH
Confidence 899999999999999999999999999999999999744333332 688898887543221100 01111
Q ss_pred HHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCC
Q 012678 84 SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYL 163 (458)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (458)
.....+...+...+.+.++.+.. ++||+||+|.+.+++..+|+++|||++.+++.+........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-----~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~----------- 143 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAARD-----WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFP----------- 143 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-----cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCC-----------
Confidence 22223333333444444443332 78999999998899999999999999999887543211000
Q ss_pred CccCCCCccccCCCCCCCCCCCCC-cc-cCCCchHHHHHHHHHhhcc---------CccEEEEcChhhhhHHHHHHhhhc
Q 012678 164 AEQDSQLEKPVTELPPLRVKDIPI-IV-THDTRNFHQLISAVVSKTK---------ACSGLIWNSFEDLEQTELTRLHKD 232 (458)
Q Consensus 164 p~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~---------~~~~~l~~s~~~le~~~~~~~~~~ 232 (458)
+.. ... ...... .. ......+...+....+... .....+....+.+.+ .+++
T Consensus 144 ~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 206 (401)
T cd03784 144 PPL--------GRA----NLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLP-----PPPD 206 (401)
T ss_pred Ccc--------chH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCC-----CCCC
Confidence 000 000 000000 00 0000001111111111111 011112222222211 1233
Q ss_pred CCCCccccC-CccccccccCCCcccCccccchhhccCCCCcEEEEEcCcccc-CCHHHHHHHHHHHHhCCCceEEEEcCC
Q 012678 233 FPIPMFPIG-PFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVV-VNVTEFLEIAWGLANSRVPFLWVVRPG 310 (458)
Q Consensus 233 ~~~pv~~vG-pl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~ 310 (458)
++....++| ++...... ...+.++..|++. ++++||||+||... .....+..++++++..+.++||+++..
T Consensus 207 ~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~ 279 (401)
T cd03784 207 WPRFDLVTGYGFRDVPYN-----GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWG 279 (401)
T ss_pred ccccCcEeCCCCCCCCCC-----CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCc
Confidence 344456664 33322211 1223446778865 68899999999976 445667788999999999999998765
Q ss_pred CCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHH
Q 012678 311 LVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSH 390 (458)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 390 (458)
... ...++ +|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.||+++++
T Consensus 280 ~~~----~~~~~--------~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~ 345 (401)
T cd03784 280 GLG----AEDLP--------DNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAE 345 (401)
T ss_pred ccc----ccCCC--------CceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHH
Confidence 311 01233 45589999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhcceecCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH
Q 012678 391 VWRVGLHLER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERL 451 (458)
Q Consensus 391 ~~G~G~~l~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~ 451 (458)
+|+|+.++. ++++++|.++|++++++ + +++++++.+++++ ..++..++++.+
T Consensus 346 -~G~g~~l~~~~~~~~~l~~al~~~l~~---~-~~~~~~~~~~~~~----~~~g~~~~~~~i 398 (401)
T cd03784 346 -LGAGPALDPRELTAERLAAALRRLLDP---P-SRRRAAALLRRIR----EEDGVPSAADVI 398 (401)
T ss_pred -CCCCCCCCcccCCHHHHHHHHHHHhCH---H-HHHHHHHHHHHHH----hccCHHHHHHHH
Confidence 599999987 78999999999999987 4 5666777777775 344454444443
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2.2e-43 Score=341.31 Aligned_cols=374 Identities=18% Similarity=0.274 Sum_probs=253.6
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCccC----cccHHHHHHHHHHhcCh
Q 012678 20 FPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVS----TENAISLLTVLNDKCVV 95 (458)
Q Consensus 20 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 95 (458)
+.+|++||++|++.||++|++|||+|+|++++........ .|+.+..++......... ..+.......+...+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAED 79 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-cCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999755444433 688998888654321110 02223333333333333
Q ss_pred hHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCccccC
Q 012678 96 PFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLEKPVT 175 (458)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 175 (458)
.+.++. ++.+. .+||+||+|.+++++..+|+.+|||+|.+++.+... ..++... .|. ....+..
T Consensus 80 ~~~~l~-~~~~~----~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~----~~~-~~~~~~~-- 143 (392)
T TIGR01426 80 VLPQLE-EAYKG----DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMV----SPA-GEGSAEE-- 143 (392)
T ss_pred HHHHHH-HHhcC----CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccccccc----ccc-chhhhhh--
Confidence 333333 32222 689999999988899999999999999886543211 0000000 000 0000000
Q ss_pred CCCCCCCCCCCCcccCCCchHHHHHHHHHhh------------ccCccEEEEcChhhhhHHHHHHhhhcCCCCccccCCc
Q 012678 176 ELPPLRVKDIPIIVTHDTRNFHQLISAVVSK------------TKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPF 243 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGpl 243 (458)
.....+ ......+.+..+++. ....+..+..+.+.|+++ +.+++.+++++||+
T Consensus 144 --~~~~~~--------~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~~~~~~~Gp~ 208 (392)
T TIGR01426 144 --GAIAER--------GLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA-----GETFDDSFTFVGPC 208 (392)
T ss_pred --hccccc--------hhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-----ccccCCCeEEECCC
Confidence 000000 001111111111111 111222344555555443 34556679999997
Q ss_pred cccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCch
Q 012678 244 HKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPK 323 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~ 323 (458)
...... ...|....+++++||||+||........+..+++++++.+.+++|..+..... +....+
T Consensus 209 ~~~~~~-----------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~--~~~~~~-- 273 (392)
T TIGR01426 209 IGDRKE-----------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP--ADLGEL-- 273 (392)
T ss_pred CCCccc-----------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh--hHhccC--
Confidence 754221 23466666688999999999866566688889999999999999988654210 001122
Q ss_pred hHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC-cc
Q 012678 324 GFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER-KF 402 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~ 402 (458)
++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||+++++ +|+|..+.. ++
T Consensus 274 ------~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~~~~ 344 (392)
T TIGR01426 274 ------PPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPPEEV 344 (392)
T ss_pred ------CCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEeccccC
Confidence 345588999999999999998 99999999999999999999999999999999999999 599999987 89
Q ss_pred cHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 403 ERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 403 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
++++|.++|.++++| ++|++++++++++++ ..++...+++.+.+.+.
T Consensus 345 ~~~~l~~ai~~~l~~---~~~~~~~~~l~~~~~----~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 345 TAEKLREAVLAVLSD---PRYAERLRKMRAEIR----EAGGARRAADEIEGFLA 391 (392)
T ss_pred CHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH----HcCCHHHHHHHHHHhhc
Confidence 999999999999999 899999999999998 46677788877776543
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-43 Score=334.16 Aligned_cols=392 Identities=18% Similarity=0.203 Sum_probs=244.9
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCC--CccCcccHHHHHHHHHH
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWE--SEVSTENAISLLTVLND 91 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 91 (458)
+|||+|+..|++||++|+++||++|.++||+|+|++++...+..+. .|+.|..++....+ ......+....+.....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-AGLAFVAYPIRDSELATEDGKFAGVKSFRRLLQ 79 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-hCcceeeccccCChhhhhhhhhhccchhHHHhh
Confidence 5899999999999999999999999999999999999865555554 45667777643111 11111111121111222
Q ss_pred hcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCc
Q 012678 92 KCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLE 171 (458)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 171 (458)
.......+.++-+.+ ..||+++.|.....+ .+++..++|++............... .. .+.... ..
T Consensus 80 ~~~~~~~~~~~~~~e-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~-~~ 145 (406)
T COG1819 80 QFKKLIRELLELLRE-----LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL------PL-PPVGIA-GK 145 (406)
T ss_pred hhhhhhHHHHHHHHh-----cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc------Cc-cccccc-cc
Confidence 222333334444444 568999999766555 88999999998754442221111100 00 000000 00
Q ss_pred cccCCCCCCCCCCCCCcccCCCchHHHHHHH--HHhhccCccEEEEcChhhhhHHHHHHhh---hcCCCCccccCCcccc
Q 012678 172 KPVTELPPLRVKDIPIIVTHDTRNFHQLISA--VVSKTKACSGLIWNSFEDLEQTELTRLH---KDFPIPMFPIGPFHKY 246 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~s~~~le~~~~~~~~---~~~~~pv~~vGpl~~~ 246 (458)
..++.. .+...................... ..+...+.-..+..+-+.++........ ..++....++||+...
T Consensus 146 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 224 (406)
T COG1819 146 LPIPLY-PLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPLLGE 224 (406)
T ss_pred cccccc-ccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCcccccccc
Confidence 000000 011111110000011000000000 0000000000011111111111111000 1111125566666654
Q ss_pred ccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHH
Q 012678 247 CLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFL 326 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 326 (458)
.. .+...|.. .++++||+|+||.... .++++.++++++..+.++|...++ ... ....+|+|+
T Consensus 225 ~~----------~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~~---~~~~~p~n~- 286 (406)
T COG1819 225 AA----------NELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-ARD---TLVNVPDNV- 286 (406)
T ss_pred cc----------ccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-ccc---ccccCCCce-
Confidence 33 22344433 3789999999999976 788999999999999999998866 211 134566666
Q ss_pred HhhcCCcceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC-cccHH
Q 012678 327 EMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER-KFERR 405 (458)
Q Consensus 327 ~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~ 405 (458)
.+.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||+.||.|+++ +|+|..+.. .++++
T Consensus 287 -------~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~~~~l~~~ 356 (406)
T COG1819 287 -------IVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALPFEELTEE 356 (406)
T ss_pred -------EEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecCcccCCHH
Confidence 89999999999999999 99999999999999999999999999999999999999 699999998 89999
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 406 EIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 406 ~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
.|+++|+++|+| +.|+++++++++.++ +.++..++.+.+.+...
T Consensus 357 ~l~~av~~vL~~---~~~~~~~~~~~~~~~----~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 357 RLRAAVNEVLAD---DSYRRAAERLAEEFK----EEDGPAKAADLLEEFAR 400 (406)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHhh----hcccHHHHHHHHHHHHh
Confidence 999999999999 999999999999999 45566666666665443
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.7e-41 Score=336.39 Aligned_cols=396 Identities=32% Similarity=0.432 Sum_probs=256.2
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC-CCC--ce--------EEecCCCCCCCccCc-cc
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN-YPH--FS--------FNSISESLWESEVST-EN 81 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~-~~~--~~--------~~~~~~~~~~~~~~~-~~ 81 (458)
+.+++++++|++||++|+..+|+.|+++||+||++++......... ... +. +...++.++...... ..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 5688899999999999999999999999999999998754433221 111 11 111111122211111 11
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcC-CCeEEEecchHHHHHHHHHHHHHHHh
Q 012678 82 AISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLR-LPRIVLRTSSISSFLAFSAFQILLEK 160 (458)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~~ 160 (458)
.......+...|...+.+.+..+....+ .++|++|+|.+..+...++.... +|...+.+..........+ .+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~----~~~ 158 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKS--EKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP----SPL 158 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhc--CCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc----Ccc
Confidence 1222456667777777775555554322 34999999998777777776665 8888877776554433222 122
Q ss_pred cCCCccCCCCc---cccCCCC-CCCCCCCCCcccCC-----CchHHH-HH-------HHHHhhccCccEEEEcChhhhhH
Q 012678 161 GYLAEQDSQLE---KPVTELP-PLRVKDIPIIVTHD-----TRNFHQ-LI-------SAVVSKTKACSGLIWNSFEDLEQ 223 (458)
Q Consensus 161 ~~~p~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~-~~-------~~~~~~~~~~~~~l~~s~~~le~ 223 (458)
+++|....... ..+++.. .+....++...... ...... .. ........+++..+.|+...++.
T Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~ 238 (496)
T KOG1192|consen 159 SYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDF 238 (496)
T ss_pred cccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCC
Confidence 23333221000 0000000 00000000000000 000000 00 01113344555666777666554
Q ss_pred HHHHHhhhcCCCCccccCCccccccccCCCcccCccccchhhccCCCC--cEEEEEcCccc---cCCHHHHHHHHHHHHh
Q 012678 224 TELTRLHKDFPIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAK--SVMYVSFGSIV---VVNVTEFLEIAWGLAN 298 (458)
Q Consensus 224 ~~~~~~~~~~~~pv~~vGpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~i~vs~Gs~~---~~~~~~~~~~~~al~~ 298 (458)
. +....+++++|||+...... .... ...+|++..+.. ++|||||||+. .++.+....++.|++.
T Consensus 239 ~-----~~~~~~~v~~IG~l~~~~~~----~~~~--~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~ 307 (496)
T KOG1192|consen 239 E-----PRPLLPKVIPIGPLHVKDSK----QKSP--LPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALES 307 (496)
T ss_pred C-----CCCCCCCceEECcEEecCcc----cccc--ccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHh
Confidence 1 11124569999999987432 1111 245677765554 99999999999 6899999999999999
Q ss_pred C-CCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhhh-hcCCCccccccccCchhHHHHHhhCCcccccc
Q 012678 299 S-RVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEV-LAHPAVGGFWTHNGWNSTLESICEGVPMICQP 376 (458)
Q Consensus 299 ~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~l-l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P 376 (458)
. ++.|+|++..... ..+++++.++.++|+...+|+||.++ |.|+++++||||||+|||+|++++|||||++|
T Consensus 308 ~~~~~FiW~~~~~~~------~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~P 381 (496)
T KOG1192|consen 308 LQGVTFLWKYRPDDS------IYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVP 381 (496)
T ss_pred CCCceEEEEecCCcc------hhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCC
Confidence 9 8889999986431 11223332222345677799999998 59999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHhcceecCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 012678 377 CFGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLEL 436 (458)
Q Consensus 377 ~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~ 436 (458)
+++||+.||++++++ |.|..+.. +++.+.+..++++++++ ++|+++++++++.+++
T Consensus 382 lf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~---~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 382 LFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN---EEYKEAAKRLSEILRD 438 (496)
T ss_pred ccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC---hHHHHHHHHHHHHHHc
Confidence 999999999999996 88777777 77776699999999999 8999999999999874
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=7.6e-26 Score=213.42 Aligned_cols=336 Identities=14% Similarity=0.174 Sum_probs=203.9
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCC-CCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhcC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN-PSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCV 94 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (458)
||++.+.++.||++|.+++|++|.++||+|+|++.....+. .-...++.+..++..-.. .... ...+........
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~---~~~~-~~~~~~~~~~~~ 78 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLR---RYFD-LKNIKDPFLVMK 78 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcC---CCch-HHHHHHHHHHHH
Confidence 67888888889999999999999999999999997644322 111136777777632111 1111 112222222221
Q ss_pred hhHHHHHHHHhhCCCCCCCeeEEEecCch--hhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCcc
Q 012678 95 VPFQDCLAKLISNGDQEEPVTCLITDAIW--HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLEK 172 (458)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 172 (458)
..+ ..+.-+.+ .+||+||....+ ..+..+|..+++|++...........
T Consensus 79 ~~~-~~~~i~~~-----~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~----------------------- 129 (352)
T PRK12446 79 GVM-DAYVRIRK-----LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLA----------------------- 129 (352)
T ss_pred HHH-HHHHHHHh-----cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHH-----------------------
Confidence 111 12222333 789999988755 44678999999999886544221111
Q ss_pred ccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCC-CCccccCCccccccccC
Q 012678 173 PVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFP-IPMFPIGPFHKYCLASS 251 (458)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~pv~~vGpl~~~~~~~~ 251 (458)
-+.+. +.++. +..++++.. ..++ ..++++|+-.-+...
T Consensus 130 ------------------------nr~~~------~~a~~-v~~~f~~~~--------~~~~~~k~~~tG~Pvr~~~~-- 168 (352)
T PRK12446 130 ------------------------NKIAL------RFASK-IFVTFEEAA--------KHLPKEKVIYTGSPVREEVL-- 168 (352)
T ss_pred ------------------------HHHHH------HhhCE-EEEEccchh--------hhCCCCCeEEECCcCCcccc--
Confidence 01111 11122 233333211 1112 247778854432211
Q ss_pred CCcccCccccchhhccCCCCcEEEEEcCccccCCHHH-HHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhc
Q 012678 252 SSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTE-FLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD 330 (458)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (458)
. .......+.+.-.+++++|+|..||......+. +..++..+.. +.+++|.++.+. +.+.. .. .
T Consensus 169 --~-~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~---------~~~~~-~~-~ 233 (352)
T PRK12446 169 --K-GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN---------LDDSL-QN-K 233 (352)
T ss_pred --c-ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch---------HHHHH-hh-c
Confidence 0 001111122222346889999999998733322 3333444432 478889887542 11111 01 1
Q ss_pred CCcceeecc-C-hhhhhcCCCccccccccCchhHHHHHhhCCcccccccc-----cchhhHHHHHHHHHhcceecCC-cc
Q 012678 331 GRGHIVKWA-P-QQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCF-----GDQLVNARYVSHVWRVGLHLER-KF 402 (458)
Q Consensus 331 ~~~~~~~~i-p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~-----~DQ~~na~~v~~~~G~G~~l~~-~~ 402 (458)
.+..+.+|+ + ..+++.++++ +|||||.+|+.|++++|+|+|++|+. .||..||+++++ .|+|..+.. ++
T Consensus 234 ~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~l~~~~~ 310 (352)
T PRK12446 234 EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYASVLYEEDV 310 (352)
T ss_pred CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCEEEcchhcC
Confidence 233556787 4 4569999999 99999999999999999999999985 489999999999 599999987 89
Q ss_pred cHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 403 ERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 403 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
+++.|.+++.++++|. +.+++++++++ ..++++++++.+.+
T Consensus 311 ~~~~l~~~l~~ll~~~--~~~~~~~~~~~------------~~~aa~~i~~~i~~ 351 (352)
T PRK12446 311 TVNSLIKHVEELSHNN--EKYKTALKKYN------------GKEAIQTIIDHISE 351 (352)
T ss_pred CHHHHHHHHHHHHcCH--HHHHHHHHHcC------------CCCHHHHHHHHHHh
Confidence 9999999999999872 34544443322 22566666666654
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=2.5e-26 Score=216.27 Aligned_cols=305 Identities=17% Similarity=0.198 Sum_probs=193.2
Q ss_pred CEEEEEcCC-CCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHH---
Q 012678 15 RRVILFPLP-LQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLN--- 90 (458)
Q Consensus 15 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (458)
|||+|...+ |.||+..++.||++| |||+|+|++.......... .+....++.-.........+....+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP--RFPVREIPGLGPIQENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc--ccCEEEccCceEeccCCccchHHHHHHHHHhh
Confidence 899999888 779999999999999 6999999998643333322 24555555322222222233322222221
Q ss_pred HhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCC
Q 012678 91 DKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQL 170 (458)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (458)
......+.+.++.+.. .+||+||+|. .+.+..+|+..|+|++.+.......... ...
T Consensus 77 ~~~~~~~~~~~~~l~~-----~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~----------~~~------- 133 (318)
T PF13528_consen 77 ARLARRIRREIRWLRE-----FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPN----------FWL------- 133 (318)
T ss_pred HHHHHHHHHHHHHHHh-----cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccccc----------CCc-------
Confidence 1122333334444433 7899999995 4446788999999999987773221000 000
Q ss_pred ccccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhh--ccCccEEEEcChhhhhHHHHHHhhhcCCCCccccCCcccccc
Q 012678 171 EKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSK--TKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPFHKYCL 248 (458)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGpl~~~~~ 248 (458)
.........+...... ...+...+.-++. ... .. ...+.++||+..+..
T Consensus 134 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~------~~--~~~~~~~~p~~~~~~ 184 (318)
T PF13528_consen 134 --------------------PWDQDFGRLIERYIDRYHFPPADRRLALSFY-PPL------PP--FFRVPFVGPIIRPEI 184 (318)
T ss_pred --------------------chhhhHHHHHHHhhhhccCCcccceecCCcc-ccc------cc--cccccccCchhcccc
Confidence 0111122222332221 3444444444433 110 00 123667887775433
Q ss_pred ccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCC-CceEEEEcCCCCCCCcccCCCchhHHH
Q 012678 249 ASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSR-VPFLWVVRPGLVPGVEWLEPLPKGFLE 327 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~ 327 (458)
. ... ..+++.|+|++|..... .++++++..+ ..+++. +... .+..+
T Consensus 185 ~------~~~---------~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~------~~~~~----- 231 (318)
T PF13528_consen 185 R------ELP---------PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA------ADPRP----- 231 (318)
T ss_pred c------ccC---------CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc------ccccC-----
Confidence 1 000 12466899999987642 6677788776 455544 4321 11123
Q ss_pred hhcCCcceeecc--ChhhhhcCCCccccccccCchhHHHHHhhCCccccccc--ccchhhHHHHHHHHHhcceecCC-cc
Q 012678 328 MLDGRGHIVKWA--PQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC--FGDQLVNARYVSHVWRVGLHLER-KF 402 (458)
Q Consensus 328 ~~~~~~~~~~~i--pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~v~~~~G~G~~l~~-~~ 402 (458)
+|+.+.+|. ...++|..|++ +|||||+||++|++++|+|+|++|. ..||..||+++++ +|+|..++. ++
T Consensus 232 ---~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~~~~ 305 (318)
T PF13528_consen 232 ---GNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVLSQEDL 305 (318)
T ss_pred ---CCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEcccccC
Confidence 444777876 45679999999 9999999999999999999999999 6799999999999 699999987 89
Q ss_pred cHHHHHHHHHHH
Q 012678 403 ERREIETAIRRV 414 (458)
Q Consensus 403 ~~~~l~~~i~~l 414 (458)
+++.|++.|+++
T Consensus 306 ~~~~l~~~l~~~ 317 (318)
T PF13528_consen 306 TPERLAEFLERL 317 (318)
T ss_pred CHHHHHHHHhcC
Confidence 999999999875
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=6.2e-22 Score=184.34 Aligned_cols=308 Identities=17% Similarity=0.187 Sum_probs=189.2
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCC-EEEEEeCCCCC-CCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHh
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGF-SITIIHTNFNS-PNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDK 92 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (458)
|+|++...++-||+.|.++|+++|.++|+ +|.++.+.... .......++.+..++.+.............. .+.
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~----~~~ 76 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAP----FKL 76 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHH----HHH
Confidence 57888889999999999999999999999 57777664333 2233334788888875433322211111111 122
Q ss_pred cChhHHHHHHHHhhCCCCCCCeeEEEecCch--hhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCC
Q 012678 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAIW--HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQL 170 (458)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (458)
+.. +.+...-+.+ .+||+||.-..+ ..+..+|..+|||.+..-+-......
T Consensus 77 ~~~-~~~a~~il~~-----~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~a--------------------- 129 (357)
T COG0707 77 LKG-VLQARKILKK-----LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLA--------------------- 129 (357)
T ss_pred HHH-HHHHHHHHHH-----cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchh---------------------
Confidence 211 1112222222 789999986544 55678899999999985444221111
Q ss_pred ccccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCccccC-Cccccccc
Q 012678 171 EKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIG-PFHKYCLA 249 (458)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vG-pl~~~~~~ 249 (458)
.+++.. .++. +..+++..+.. .. +..++.+| |+.....
T Consensus 130 --------------------------nk~~~~------~a~~-V~~~f~~~~~~-----~~--~~~~~~tG~Pvr~~~~- 168 (357)
T COG0707 130 --------------------------NKILSK------FAKK-VASAFPKLEAG-----VK--PENVVVTGIPVRPEFE- 168 (357)
T ss_pred --------------------------HHHhHH------hhce-eeecccccccc-----CC--CCceEEecCcccHHhh-
Confidence 111111 1111 23333221100 00 11256666 4443321
Q ss_pred cCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHH-HHHHHHhC--CCceEEEEcCCCCCCCcccCCCchhHH
Q 012678 250 SSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLE-IAWGLANS--RVPFLWVVRPGLVPGVEWLEPLPKGFL 326 (458)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~-~~~al~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~ 326 (458)
. .+.. -... +...++++|+|+.||+.... +.. +.+++... +..+++.++.+. .+.+.
T Consensus 169 ---~-~~~~--~~~~-~~~~~~~~ilV~GGS~Ga~~---ln~~v~~~~~~l~~~~~v~~~~G~~~----------~~~~~ 228 (357)
T COG0707 169 ---E-LPAA--EVRK-DGRLDKKTILVTGGSQGAKA---LNDLVPEALAKLANRIQVIHQTGKND----------LEELK 228 (357)
T ss_pred ---c-cchh--hhhh-hccCCCcEEEEECCcchhHH---HHHHHHHHHHHhhhCeEEEEEcCcch----------HHHHH
Confidence 0 1111 1111 11126889999999998722 333 22333333 467777776542 11111
Q ss_pred Hhhc-CC-cceeeccCh-hhhhcCCCccccccccCchhHHHHHhhCCcccccccc----cchhhHHHHHHHHHhcceecC
Q 012678 327 EMLD-GR-GHIVKWAPQ-QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCF----GDQLVNARYVSHVWRVGLHLE 399 (458)
Q Consensus 327 ~~~~-~~-~~~~~~ipq-~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~~v~~~~G~G~~l~ 399 (458)
.... .+ ..+.+|+.+ .++++.+++ +||++|.+|+.|+++.|+|+|.+|.. .||..||+.++++ |.|..++
T Consensus 229 ~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~ 305 (357)
T COG0707 229 SAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIR 305 (357)
T ss_pred HHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEec
Confidence 1111 12 466789886 459999999 99999999999999999999999974 4899999999995 9999999
Q ss_pred C-cccHHHHHHHHHHHhcc
Q 012678 400 R-KFERREIETAIRRVTVE 417 (458)
Q Consensus 400 ~-~~~~~~l~~~i~~ll~~ 417 (458)
. ++|++.+.+.|.+++++
T Consensus 306 ~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 306 QSELTPEKLAELILRLLSN 324 (357)
T ss_pred cccCCHHHHHHHHHHHhcC
Confidence 8 99999999999999987
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=9.4e-23 Score=191.35 Aligned_cols=306 Identities=16% Similarity=0.141 Sum_probs=167.1
Q ss_pred EEEEEcCC-CCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCce-EEecCCCCCCCccCcccHHHHHHHHHHhc
Q 012678 16 RVILFPLP-LQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFS-FNSISESLWESEVSTENAISLLTVLNDKC 93 (458)
Q Consensus 16 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (458)
||++...+ +.||+.|.++|+++|.+ ||+|+|+++......... .++. +..+|...........+....+.......
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~ 78 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK-YGFKVFETFPGIKLKGEDGKVNIVKTLRNKEYSP 78 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh-hcCcceeccCCceEeecCCcCcHHHHHHhhcccc
Confidence 56775555 55999999999999999 999999987642222221 2333 32223110000001112222221110110
Q ss_pred ChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCccc
Q 012678 94 VVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLEKP 173 (458)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 173 (458)
...+....+.+.+ ++||+||+| +.+.+..+|+.+|||++.+..+... . + +.
T Consensus 79 ~~~~~~~~~~l~~-----~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~------~--------~-~~-------- 129 (321)
T TIGR00661 79 KKAIRREINIIRE-----YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT------R--------Y-PL-------- 129 (321)
T ss_pred HHHHHHHHHHHHh-----cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh------c--------C-Cc--------
Confidence 1233333333333 789999999 5666688999999999987653111 0 0 00
Q ss_pred cCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhc-cCccEEEEcChhhhhHHHHHHhhhcCCCCccccCCccccccccCC
Q 012678 174 VTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKT-KACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPFHKYCLASSS 252 (458)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~ 252 (458)
.. +............+ ..++.+....++.... ..| ++....+.
T Consensus 130 -----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~p-----~~~~~~~~--- 173 (321)
T TIGR00661 130 -----------------KT-DLIVYPTMAALRIFNERCERFIVPDYPFPYT----------ICP-----KIIKNMEG--- 173 (321)
T ss_pred -----------------cc-chhHHHHHHHHHHhccccceEeeecCCCCCC----------CCc-----cccccCCC---
Confidence 00 00000001111111 1222222222111000 001 11000000
Q ss_pred CcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCC
Q 012678 253 SLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGR 332 (458)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (458)
+... .+..+|.. .+++.|+|.+|+... ..+++++++.+. +.+.+...... ...+ ++|
T Consensus 174 -~~~~-~~~~~~~~--~~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~~~----~~~~--------~~~ 230 (321)
T TIGR00661 174 -PLIR-YDVDDVDN--YGEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYEVA----KNSY--------NEN 230 (321)
T ss_pred -cccc-hhhhcccc--CCCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCCCC----cccc--------CCC
Confidence 0000 01122222 245678888888542 345677776653 22322221100 1112 245
Q ss_pred cceeeccC--hhhhhcCCCccccccccCchhHHHHHhhCCccccccccc--chhhHHHHHHHHHhcceecCC-cccHHHH
Q 012678 333 GHIVKWAP--QQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFG--DQLVNARYVSHVWRVGLHLER-KFERREI 407 (458)
Q Consensus 333 ~~~~~~ip--q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~-~~~~~~l 407 (458)
+.+.+|.| ..++|+.|++ +|||||++|++||+++|+|++++|..+ ||..||+.+++ .|+|+.++. ++ ++
T Consensus 231 v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~~---~~ 304 (321)
T TIGR00661 231 VEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKEL---RL 304 (321)
T ss_pred EEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhhH---HH
Confidence 57889997 4568888888 999999999999999999999999965 89999999999 599999987 44 66
Q ss_pred HHHHHHHhcc
Q 012678 408 ETAIRRVTVE 417 (458)
Q Consensus 408 ~~~i~~ll~~ 417 (458)
.+++.++++|
T Consensus 305 ~~~~~~~~~~ 314 (321)
T TIGR00661 305 LEAILDIRNM 314 (321)
T ss_pred HHHHHhcccc
Confidence 7777777777
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=4.4e-20 Score=176.68 Aligned_cols=343 Identities=14% Similarity=0.115 Sum_probs=200.0
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCC-CCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhc
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS-PNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKC 93 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (458)
|||+|+..+..||...++.|+++|.++||+|++++.+... .......++.++.++..-... ......+......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~l~~~~~~- 76 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRR----KGSLANLKAPFKL- 76 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCC----CChHHHHHHHHHH-
Confidence 7999999888899999999999999999999999886421 111111366666665321111 1111111111111
Q ss_pred ChhHHHHHHHHhhCCCCCCCeeEEEecCc--hhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCc
Q 012678 94 VVPFQDCLAKLISNGDQEEPVTCLITDAI--WHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLE 171 (458)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pDlvI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 171 (458)
...+. .+.++.+. .+||+|++... .+.+..++...++|+|........
T Consensus 77 ~~~~~-~~~~~ik~----~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~------------------------- 126 (357)
T PRK00726 77 LKGVL-QARKILKR----FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAVP------------------------- 126 (357)
T ss_pred HHHHH-HHHHHHHh----cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCCc-------------------------
Confidence 01111 22233332 68999999863 344566788889999864221000
Q ss_pred cccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCccccCCccccccccC
Q 012678 172 KPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPFHKYCLASS 251 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGpl~~~~~~~~ 251 (458)
....++.. ..++.++..+...+. ..-..+++++|.-......
T Consensus 127 ----------------------~~~~r~~~------~~~d~ii~~~~~~~~--------~~~~~~i~vi~n~v~~~~~-- 168 (357)
T PRK00726 127 ----------------------GLANKLLA------RFAKKVATAFPGAFP--------EFFKPKAVVTGNPVREEIL-- 168 (357)
T ss_pred ----------------------cHHHHHHH------HHhchheECchhhhh--------ccCCCCEEEECCCCChHhh--
Confidence 00011111 122333333321110 0002347777744332111
Q ss_pred CCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHH-HHHHHHhCCC--ceEEEEcCCCCCCCcccCCCchhHHHh
Q 012678 252 SSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLE-IAWGLANSRV--PFLWVVRPGLVPGVEWLEPLPKGFLEM 328 (458)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~-~~~al~~~~~--~~i~~~~~~~~~~~~~~~~l~~~~~~~ 328 (458)
.... ...-+...++.++|++..|+... +.+.. +.+++++... .++|.++.+. .+.+.+.. +
T Consensus 169 ----~~~~-~~~~~~~~~~~~~i~~~gg~~~~---~~~~~~l~~a~~~~~~~~~~~~~~G~g~------~~~~~~~~-~- 232 (357)
T PRK00726 169 ----ALAA-PPARLAGREGKPTLLVVGGSQGA---RVLNEAVPEALALLPEALQVIHQTGKGD------LEEVRAAY-A- 232 (357)
T ss_pred ----cccc-hhhhccCCCCCeEEEEECCcHhH---HHHHHHHHHHHHHhhhCcEEEEEcCCCc------HHHHHHHh-h-
Confidence 0000 00011112345677776666432 22333 3366665433 3445555432 11111111 1
Q ss_pred hcCCcceeeccC-hhhhhcCCCccccccccCchhHHHHHhhCCccccccc----ccchhhHHHHHHHHHhcceecCC-cc
Q 012678 329 LDGRGHIVKWAP-QQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC----FGDQLVNARYVSHVWRVGLHLER-KF 402 (458)
Q Consensus 329 ~~~~~~~~~~ip-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G~~l~~-~~ 402 (458)
..-++.+.+|+. ..+++..+++ +|+|+|.++++||+++|+|+|++|. .+||..|+..+.+. |.|..+.. ++
T Consensus 233 ~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~~~~ 309 (357)
T PRK00726 233 AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQSDL 309 (357)
T ss_pred cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEcccC
Confidence 122356678884 5679999999 9999999999999999999999997 36899999999995 99999987 77
Q ss_pred cHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 403 ERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 403 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
++++|.++|.++++| ++++++..+-+.+.. ...+..+.++.+.+.+.
T Consensus 310 ~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 310 TPEKLAEKLLELLSD---PERLEAMAEAARALG----KPDAAERLADLIEELAR 356 (357)
T ss_pred CHHHHHHHHHHHHcC---HHHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhh
Confidence 899999999999999 666665555554443 56667777777776654
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.83 E-value=2.3e-18 Score=164.49 Aligned_cols=320 Identities=14% Similarity=0.109 Sum_probs=183.3
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCC-CCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhcC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN-PSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCV 94 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (458)
||++...+..||...++.|++.|.++||+|++++....... .....++++..++..-.... .....+...... .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~ 75 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRK----GSLKKLKAPFKL-L 75 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCC----ChHHHHHHHHHH-H
Confidence 58888888889999999999999999999999987532211 11113566666553211111 111111111110 0
Q ss_pred hhHHHHHHHHhhCCCCCCCeeEEEecCc--hhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCcc
Q 012678 95 VPFQDCLAKLISNGDQEEPVTCLITDAI--WHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLEK 172 (458)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~pDlvI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 172 (458)
..+. .+.++.+. .+||+|++... ...+..+|...++|++.......
T Consensus 76 ~~~~-~~~~~i~~----~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~--------------------------- 123 (350)
T cd03785 76 KGVL-QARKILKK----FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAV--------------------------- 123 (350)
T ss_pred HHHH-HHHHHHHh----cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCC---------------------------
Confidence 1111 12222332 68999998652 35566788888999986321100
Q ss_pred ccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCccccCCccccccccCC
Q 012678 173 PVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPFHKYCLASSS 252 (458)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~ 252 (458)
+ ....++ ..+.++.++..+....+. ++ +.++.++|.-......
T Consensus 124 --~------------------~~~~~~------~~~~~~~vi~~s~~~~~~-----~~---~~~~~~i~n~v~~~~~--- 166 (350)
T cd03785 124 --P------------------GLANRL------LARFADRVALSFPETAKY-----FP---KDKAVVTGNPVREEIL--- 166 (350)
T ss_pred --c------------------cHHHHH------HHHhhCEEEEcchhhhhc-----CC---CCcEEEECCCCchHHh---
Confidence 0 000000 012245555544333221 00 2346666643322110
Q ss_pred CcccCccccchhhccCCCCcEEEEEcCccccCC-HHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcC
Q 012678 253 SLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVN-VTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDG 331 (458)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (458)
. +.+ ..+.+...+++++|++..|+..... .+.+..++..+.+.+..+++.++.+. .+.+.+.+.+. .+
T Consensus 167 ~--~~~--~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~------~~~l~~~~~~~-~~ 235 (350)
T cd03785 167 A--LDR--ERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD------LEEVKKAYEEL-GV 235 (350)
T ss_pred h--hhh--hHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc------HHHHHHHHhcc-CC
Confidence 0 000 0122222235566777667654311 11122333344333344555665431 11122222111 35
Q ss_pred Ccceeecc-ChhhhhcCCCccccccccCchhHHHHHhhCCccccccc----ccchhhHHHHHHHHHhcceecCC-cccHH
Q 012678 332 RGHIVKWA-PQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC----FGDQLVNARYVSHVWRVGLHLER-KFERR 405 (458)
Q Consensus 332 ~~~~~~~i-pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G~~l~~-~~~~~ 405 (458)
|+.+.+|+ +..++|..+++ +|+++|.+|+.||+++|+|+|+.|. ..+|..|+..+.+. |.|..+.. +.+++
T Consensus 236 ~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~~~~~~ 312 (350)
T cd03785 236 NYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQEELTPE 312 (350)
T ss_pred CeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecCCCCHH
Confidence 77888998 45679999999 9999999999999999999999986 46799999999995 99999886 56999
Q ss_pred HHHHHHHHHhccchhHHHHHH
Q 012678 406 EIETAIRRVTVEAEGQEMRER 426 (458)
Q Consensus 406 ~l~~~i~~ll~~~~~~~~~~~ 426 (458)
++.++|.+++++ +..+++
T Consensus 313 ~l~~~i~~ll~~---~~~~~~ 330 (350)
T cd03785 313 RLAAALLELLSD---PERLKA 330 (350)
T ss_pred HHHHHHHHHhcC---HHHHHH
Confidence 999999999988 444443
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.79 E-value=7.7e-17 Score=153.87 Aligned_cols=311 Identities=16% Similarity=0.167 Sum_probs=171.5
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCC-CCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhc
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSP-NPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKC 93 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (458)
|||+|++.+..||+.....||++|.++||+|++++.+.... ......+++++.++-..... ......+......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~----~~~~~~l~~~~~~- 75 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRR----KGSFRLIKTPLKL- 75 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCC----CChHHHHHHHHHH-
Confidence 68999999999999988899999999999999998743211 11111456666665321111 1111122111111
Q ss_pred ChhHHHHHHHHhhCCCCCCCeeEEEecCch--hhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCc
Q 012678 94 VVPFQDCLAKLISNGDQEEPVTCLITDAIW--HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLE 171 (458)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 171 (458)
...+. .+.++.+. .+||+|++.... ..+..++..+++|.+........
T Consensus 76 ~~~~~-~l~~~i~~----~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~------------------------- 125 (348)
T TIGR01133 76 LKAVF-QARRILKK----FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAVP------------------------- 125 (348)
T ss_pred HHHHH-HHHHHHHh----cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCCc-------------------------
Confidence 01111 22233333 689999987533 33455788889999743111000
Q ss_pred cccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCccccC-Ccccccccc
Q 012678 172 KPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIG-PFHKYCLAS 250 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vG-pl~~~~~~~ 250 (458)
....+++ .+.++.++..+...-+. + ...+|| |+......
T Consensus 126 ----------------------~~~~~~~------~~~~d~ii~~~~~~~~~---------~--~~~~i~n~v~~~~~~- 165 (348)
T TIGR01133 126 ----------------------GLTNKLL------SRFAKKVLISFPGAKDH---------F--EAVLVGNPVRQEIRS- 165 (348)
T ss_pred ----------------------cHHHHHH------HHHhCeeEECchhHhhc---------C--CceEEcCCcCHHHhc-
Confidence 0000111 12344455544322111 0 123344 22111100
Q ss_pred CCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHh---CCCceEEEEcCCCCCCCcccCCCchhHHH
Q 012678 251 SSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLAN---SRVPFLWVVRPGLVPGVEWLEPLPKGFLE 327 (458)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 327 (458)
. +.. .+++...+++++|.+..|+... ......+.++++. .+..+++..++.. . +.+.+
T Consensus 166 --~--~~~---~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~---------~-~~l~~ 226 (348)
T TIGR01133 166 --L--PVP---RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND---------L-EKVKN 226 (348)
T ss_pred --c--cch---hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch---------H-HHHHH
Confidence 0 000 1122222244555555555442 1112223344443 3345554443321 1 22222
Q ss_pred hhcCCc--ceeecc--ChhhhhcCCCccccccccCchhHHHHHhhCCcccccccc---cchhhHHHHHHHHHhcceecCC
Q 012678 328 MLDGRG--HIVKWA--PQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCF---GDQLVNARYVSHVWRVGLHLER 400 (458)
Q Consensus 328 ~~~~~~--~~~~~i--pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~~G~G~~l~~ 400 (458)
...+.. .++.|. +..++|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+++ .|.|..+..
T Consensus 227 ~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~ 303 (348)
T TIGR01133 227 VYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQ 303 (348)
T ss_pred HHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEec
Confidence 111111 223344 45678999999 99999988999999999999999874 478889999998 499998876
Q ss_pred -cccHHHHHHHHHHHhccchhHHHHH
Q 012678 401 -KFERREIETAIRRVTVEAEGQEMRE 425 (458)
Q Consensus 401 -~~~~~~l~~~i~~ll~~~~~~~~~~ 425 (458)
+.++++|.++|.++++| ++.++
T Consensus 304 ~~~~~~~l~~~i~~ll~~---~~~~~ 326 (348)
T TIGR01133 304 KELLPEKLLEALLKLLLD---PANLE 326 (348)
T ss_pred ccCCHHHHHHHHHHHHcC---HHHHH
Confidence 66899999999999998 55444
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=141.40 Aligned_cols=334 Identities=16% Similarity=0.146 Sum_probs=193.1
Q ss_pred ccCCCCEEEEEcCC--CCcCHHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCceEEecCCCCCC--CccCcccHH
Q 012678 10 QQKKGRRVILFPLP--LQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFSFNSISESLWE--SEVSTENAI 83 (458)
Q Consensus 10 ~~~~~~~il~~~~~--~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 83 (458)
..++.+||+|++.- +.||+..++.+|+.|++. |.+|++++............++.++.+|.-... +.....+..
T Consensus 5 ~~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~ 84 (400)
T COG4671 5 EASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLD 84 (400)
T ss_pred chhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecC
Confidence 44567799999987 459999999999999998 999999998633333222368999999953322 221111111
Q ss_pred HHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCC
Q 012678 84 SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYL 163 (458)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (458)
.-...+.+. -.+++-.-.+. ++||++|+|.+-.+.. .+.+ |. ..+ .....
T Consensus 85 ~~l~e~~~~----Rs~lil~t~~~----fkPDi~IVd~~P~Glr--~EL~--pt-----------L~y------l~~~~- 134 (400)
T COG4671 85 GDLEETKKL----RSQLILSTAET----FKPDIFIVDKFPFGLR--FELL--PT-----------LEY------LKTTG- 134 (400)
T ss_pred CCHHHHHHH----HHHHHHHHHHh----cCCCEEEEeccccchh--hhhh--HH-----------HHH------HhhcC-
Confidence 112222111 11222222222 7899999998665411 1100 00 000 00000
Q ss_pred CccCCCCccccCCCCCCCCCCCCCccc-----CCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHH-HhhhcCCCCc
Q 012678 164 AEQDSQLEKPVTELPPLRVKDIPIIVT-----HDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELT-RLHKDFPIPM 237 (458)
Q Consensus 164 p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~-~~~~~~~~pv 237 (458)
+. . -+..+++.+... ++.....+.+.+ ..+.+++...+.+--+.-. .........+
T Consensus 135 t~----~--------vL~lr~i~D~p~~~~~~w~~~~~~~~I~r------~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~ 196 (400)
T COG4671 135 TR----L--------VLGLRSIRDIPQELEADWRRAETVRLINR------FYDLVLVYGDPDFYDPLTEFPFAPAIRAKM 196 (400)
T ss_pred Cc----c--------eeehHhhhhchhhhccchhhhHHHHHHHH------hheEEEEecCccccChhhcCCccHhhhhhe
Confidence 00 0 001111111000 111111222222 2233444444433211000 0011112348
Q ss_pred cccCCccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHh-CCCc--eEEEEcCCCCCC
Q 012678 238 FPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLAN-SRVP--FLWVVRPGLVPG 314 (458)
Q Consensus 238 ~~vGpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~-~~~~--~i~~~~~~~~~~ 314 (458)
.|+|-+.-+-+. ...|.. .. +++..|+||.|... ...+.+...++|... .+.+ .+..+++.
T Consensus 197 ~ytG~vq~~~~~---~~~p~~-------~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~---- 260 (400)
T COG4671 197 RYTGFVQRSLPH---LPLPPH-------EA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPF---- 260 (400)
T ss_pred eEeEEeeccCcC---CCCCCc-------CC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCC----
Confidence 999988211110 111111 11 45678999998855 366677777776655 3443 44444443
Q ss_pred CcccCCCchh----HHHhhc--CCcceeeccCh-hhhhcCCCccccccccCchhHHHHHhhCCccccccccc---chhhH
Q 012678 315 VEWLEPLPKG----FLEMLD--GRGHIVKWAPQ-QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFG---DQLVN 384 (458)
Q Consensus 315 ~~~~~~l~~~----~~~~~~--~~~~~~~~ipq-~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~---DQ~~n 384 (458)
+|.. +....+ +++.+..|-.+ ..++..++. +|+-||+||++|-|.+|+|-|++|... +|-.-
T Consensus 261 ------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliR 332 (400)
T COG4671 261 ------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIR 332 (400)
T ss_pred ------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHH
Confidence 4543 323333 56677889876 558888888 999999999999999999999999863 99999
Q ss_pred HHHHHHHHhcceecCC-cccHHHHHHHHHHHhc
Q 012678 385 ARYVSHVWRVGLHLER-KFERREIETAIRRVTV 416 (458)
Q Consensus 385 a~~v~~~~G~G~~l~~-~~~~~~l~~~i~~ll~ 416 (458)
|+|+++ +|+--++.+ ++|+..|.++|+..++
T Consensus 333 A~Rl~~-LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 333 AQRLEE-LGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred HHHHHh-cCcceeeCcccCChHHHHHHHHhccc
Confidence 999999 899998888 9999999999999998
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.74 E-value=1.6e-16 Score=152.33 Aligned_cols=348 Identities=9% Similarity=-0.030 Sum_probs=189.9
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC--CCCceEEecCCCCCCCccCcccHHHHHHHHHHh
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN--YPHFSFNSISESLWESEVSTENAISLLTVLNDK 92 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (458)
.||++...+..||+.|. .|+++|.++|++|.|++.... ...+. ..++.+..++- ..+.+.+..+.+
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~-~m~~~g~~~~~~~~~l~v---------~G~~~~l~~~~~- 73 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP-RMAAEGCEVLYSMEELSV---------MGLREVLGRLGR- 73 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH-HHHhCcCccccChHHhhh---------ccHHHHHHHHHH-
Confidence 48999999999999999 999999999999999987421 11110 01122222221 011111211111
Q ss_pred cChhHHHHHHHHhhCCCCCCCeeEEEecCc-hhh--HHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCC
Q 012678 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAI-WHF--AQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQ 169 (458)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~-~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 169 (458)
....+....+.+.+ .+||+||.-.+ ++. ....|+.+|||++.+.+- .. ++..
T Consensus 74 ~~~~~~~~~~~l~~-----~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P-~~-waw~------------------ 128 (385)
T TIGR00215 74 LLKIRKEVVQLAKQ-----AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP-QV-WAWR------------------ 128 (385)
T ss_pred HHHHHHHHHHHHHh-----cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC-cH-hhcC------------------
Confidence 11122233333333 78999996333 222 334888999999975421 10 0000
Q ss_pred CccccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCccccC-Ccccccc
Q 012678 170 LEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIG-PFHKYCL 248 (458)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vG-pl~~~~~ 248 (458)
..+.+.+.+. ++.++..+..+ ...+ . ..+.+..+|| |+.....
T Consensus 129 --------------------~~~~r~l~~~----------~d~v~~~~~~e--~~~~---~-~~g~~~~~vGnPv~~~~~ 172 (385)
T TIGR00215 129 --------------------KWRAKKIEKA----------TDFLLAILPFE--KAFY---Q-KKNVPCRFVGHPLLDAIP 172 (385)
T ss_pred --------------------cchHHHHHHH----------HhHhhccCCCc--HHHH---H-hcCCCEEEECCchhhhcc
Confidence 0111111121 22222222221 1111 1 1134566788 4322211
Q ss_pred ccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhC-----CCceEEEEcCCCCCCCcccCCCch
Q 012678 249 ASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANS-----RVPFLWVVRPGLVPGVEWLEPLPK 323 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~ 323 (458)
. ..+...+..+-+.-.+++++|.+..||....-.+....++++++.. +.++++...... . ...-+
T Consensus 173 ~----~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~--~----~~~~~ 242 (385)
T TIGR00215 173 L----YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK--R----RLQFE 242 (385)
T ss_pred c----cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch--h----HHHHH
Confidence 0 0011111222222234677888888887752233445555555442 234544433221 0 00011
Q ss_pred hHHHhhcCCcceeecc-ChhhhhcCCCccccccccCchhHHHHHhhCCccccc----cccc---------chhhHHHHHH
Q 012678 324 GFLEMLDGRGHIVKWA-PQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQ----PCFG---------DQLVNARYVS 389 (458)
Q Consensus 324 ~~~~~~~~~~~~~~~i-pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~----P~~~---------DQ~~na~~v~ 389 (458)
.+.+....+..+.-+. ....++..+|+ +|+-+|..|+ |++++|+|+|++ |+.. +|..|+..+.
T Consensus 243 ~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~ 319 (385)
T TIGR00215 243 QIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILA 319 (385)
T ss_pred HHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhc
Confidence 1111111122232222 33568999999 9999999887 999999999999 8752 3888999999
Q ss_pred HHHhcceecCC-cccHHHHHHHHHHHhccc----h-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 012678 390 HVWRVGLHLER-KFERREIETAIRRVTVEA----E-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVD 453 (458)
Q Consensus 390 ~~~G~G~~l~~-~~~~~~l~~~i~~ll~~~----~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~ 453 (458)
.+ ++...+.. +.|++.|.+.+.++++|. + .+.+++..+++++++ .+.|.+.++++.+++
T Consensus 320 ~~-~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 320 NR-LLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI----YCNADSERAAQAVLE 384 (385)
T ss_pred CC-ccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHhh
Confidence 95 99988876 899999999999999983 2 344555555555544 367778888877765
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.71 E-value=3.7e-16 Score=150.83 Aligned_cols=163 Identities=13% Similarity=0.161 Sum_probs=109.6
Q ss_pred CCcEEEEEcCccccCCHHHHHHHHHHHHhC-CCceEEEEcCCCCCCCcccCCCchhHHH---hhcCCcceeeccCh-hhh
Q 012678 270 AKSVMYVSFGSIVVVNVTEFLEIAWGLANS-RVPFLWVVRPGLVPGVEWLEPLPKGFLE---MLDGRGHIVKWAPQ-QEV 344 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~ipq-~~l 344 (458)
++++|++..|+... .+.+..+++++.+. +.++++..+.+. .+-+.+.+ ..++|+.+.+|+++ .++
T Consensus 201 ~~~~il~~~G~~~~--~k~~~~li~~l~~~~~~~~viv~G~~~--------~~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 201 NKKILLIMAGAHGV--LGNVKELCQSLMSVPDLQVVVVCGKNE--------ALKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCcEEEEEcCCCCC--CcCHHHHHHHHhhCCCcEEEEEeCCCH--------HHHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 56788887888753 23456677777654 456666655321 01122221 22246788899987 469
Q ss_pred hcCCCccccccccCchhHHHHHhhCCccccc-ccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccchhHHH
Q 012678 345 LAHPAVGGFWTHNGWNSTLESICEGVPMICQ-PCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQEM 423 (458)
Q Consensus 345 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~ 423 (458)
+..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++. |+|+.. .+++++.++|.++++| ++.
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~---~~~~~l~~~i~~ll~~---~~~ 341 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI---RDDEEVFAKTEALLQD---DMK 341 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE---CCHHHHHHHHHHHHCC---HHH
Confidence 999999 99999988999999999999985 6777888999999884 988754 3679999999999998 444
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 424 RERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
+++..+-..++. ...+.++.++.+++.+
T Consensus 342 ~~~m~~~~~~~~----~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 342 LLQMKEAMKSLY----LPEPADHIVDDILAEN 369 (380)
T ss_pred HHHHHHHHHHhC----CCchHHHHHHHHHHhh
Confidence 433322222221 2335555555555544
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.64 E-value=1.9e-14 Score=139.13 Aligned_cols=107 Identities=12% Similarity=0.146 Sum_probs=69.0
Q ss_pred hhhhhcCCCccccccccCchhHHHHHhhCCccccccccc--------chhhH-----HHHHHHHHhcceecCC-cccHHH
Q 012678 341 QQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFG--------DQLVN-----ARYVSHVWRVGLHLER-KFERRE 406 (458)
Q Consensus 341 q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--------DQ~~n-----a~~v~~~~G~G~~l~~-~~~~~~ 406 (458)
-..++..+++ +|+.+|.+++ |++++|+|+|..|-.. .|..| +..+.+. +++..+.. ..+++.
T Consensus 255 ~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 330 (380)
T PRK00025 255 KREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQEEATPEK 330 (380)
T ss_pred HHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCCCCCHHH
Confidence 3568899999 9999998887 9999999999885432 22222 2333332 33333443 678999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 407 IETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 407 l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
|.++|.++++| ++.+++..+-.+++.+.. ..+...+.++.+.+.+
T Consensus 331 l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 331 LARALLPLLAD---GARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred HHHHHHHHhcC---HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 99999999999 544443333333333332 3456666666666544
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.61 E-value=2.9e-14 Score=130.44 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=76.9
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHhC--CCceEEEEcCCCCCCCcccCCCchhHHHhh--cCCcceeeccChh-hhh
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLANS--RVPFLWVVRPGLVPGVEWLEPLPKGFLEML--DGRGHIVKWAPQQ-EVL 345 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~ipq~-~ll 345 (458)
.+.|++++|.... ......+++++++. +.++.++++... ...+.+.+.. ..|+.+..|+++. ++|
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~--------~~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN--------PNLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC--------cCHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 3578999986553 23445566777654 456777776542 1223333221 2467788999975 699
Q ss_pred cCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHH
Q 012678 346 AHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARY 387 (458)
Q Consensus 346 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 387 (458)
..+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99999 999999 9999999999999999999999999975
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.60 E-value=1.4e-13 Score=132.83 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=111.3
Q ss_pred CCCcEEEEEcCccccCCHHHHHHHHHHHHh-C-CCceEEEEcCCCCCCCcccCCCchhHHHhh--cCCcceeeccCh-hh
Q 012678 269 AAKSVMYVSFGSIVVVNVTEFLEIAWGLAN-S-RVPFLWVVRPGLVPGVEWLEPLPKGFLEML--DGRGHIVKWAPQ-QE 343 (458)
Q Consensus 269 ~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~-~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~ipq-~~ 343 (458)
+++++|+++.|+... .+.+..+++++.+ . +.++++..+.+. .+-+.+.+.. .+++.+.+|+++ .+
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--------~l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK--------ELKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--------HHHHHHHHHhccCCCeEEEeccchHHH
Confidence 356788898898762 2445555655432 2 345655554331 0112222221 246677899976 45
Q ss_pred hhcCCCccccccccCchhHHHHHhhCCccccc-ccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccchhHH
Q 012678 344 VLAHPAVGGFWTHNGWNSTLESICEGVPMICQ-PCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQE 422 (458)
Q Consensus 344 ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~ 422 (458)
++..+++ +|+.+|..|+.||++.|+|+|++ |..++|..|+..+++. |+|+... +.+++.++|.++++| ++
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~---~~~~l~~~i~~ll~~---~~ 340 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD---TPEEAIKIVASLTNG---NE 340 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC---CHHHHHHHHHHHhcC---HH
Confidence 9999999 99998888999999999999998 7777788999999995 9998754 788999999999988 33
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 423 MRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
.+ ++|++..++.. ...+..+.++.+++.+.
T Consensus 341 ~~---~~m~~~~~~~~-~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 341 QL---TNMISTMEQDK-IKYATQTICRDLLDLIG 370 (391)
T ss_pred HH---HHHHHHHHHhc-CCCCHHHHHHHHHHHhh
Confidence 22 23333333211 34556666676666554
No 41
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.59 E-value=4.3e-13 Score=128.77 Aligned_cols=351 Identities=13% Similarity=0.088 Sum_probs=191.6
Q ss_pred CCCCcCHHHHHHHHHHHHh--CCCEEE---EEeCCCCCCC--CCCCCCceEEecCCCCCCCccCcccHHHHHHHHHH-hc
Q 012678 22 LPLQGHINPMLQLASILYS--KGFSIT---IIHTNFNSPN--PSNYPHFSFNSISESLWESEVSTENAISLLTVLND-KC 93 (458)
Q Consensus 22 ~~~~GH~~p~l~La~~L~~--rGh~Vt---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 93 (458)
+-++|-=.-.+.||++|.+ .|++|. ++++....+. ... .| .+..+| .+.-........+.+..+ ..
T Consensus 4 snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~-~g-~~~~~~----sgg~~~~~~~~~~~~~~~gl~ 77 (396)
T TIGR03492 4 SNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI-IG-PTKELP----SGGFSYQSLRGLLRDLRAGLV 77 (396)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce-eC-CCCCCC----CCCccCCCHHHHHHHHHhhHH
Confidence 4566777788999999998 599999 9988633221 111 12 233333 333333344445544444 33
Q ss_pred ChhHHH--HHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCc
Q 012678 94 VVPFQD--CLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLE 171 (458)
Q Consensus 94 ~~~l~~--~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 171 (458)
...++. .++++. .+||+||.-..+. ++.+|...|+|++++.+.-... . ..+-......+.+
T Consensus 78 ~~~~~~~~~~~~~~------~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~----~------~~~~~~~~~~~~~ 140 (396)
T TIGR03492 78 GLTLGQWRALRKWA------KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDY----Y------WESGPRRSPSDEY 140 (396)
T ss_pred HHHHHHHHHHHHHh------hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccce----e------ecCCCCCccchhh
Confidence 332222 444432 2799999876555 8889999999999966551100 0 0000000001112
Q ss_pred cccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCccccC-Ccccccccc
Q 012678 172 KPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIG-PFHKYCLAS 250 (458)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vG-pl~~~~~~~ 250 (458)
.++++..... + .+..-..+.++.++... +. ....+ +. .+.++.++| |+......
T Consensus 141 ~~~~G~~~~p-----------------~-e~n~l~~~~a~~v~~~~-~~-t~~~l---~~-~g~k~~~vGnPv~d~l~~- 195 (396)
T TIGR03492 141 HRLEGSLYLP-----------------W-ERWLMRSRRCLAVFVRD-RL-TARDL---RR-QGVRASYLGNPMMDGLEP- 195 (396)
T ss_pred hccCCCccCH-----------------H-HHHHhhchhhCEEeCCC-HH-HHHHH---HH-CCCeEEEeCcCHHhcCcc-
Confidence 2222221111 1 11111123344444433 22 11111 21 135689999 66544321
Q ss_pred CCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhC----CCceEEEEcCCCCCCCcccCCCchhHH
Q 012678 251 SSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANS----RVPFLWVVRPGLVPGVEWLEPLPKGFL 326 (458)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~l~~~~~ 326 (458)
... .-+ .+++++|.+-.||....-...+..++++++.. +..+++.+.+.. ..+.+.
T Consensus 196 ------~~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~---------~~~~~~ 255 (396)
T TIGR03492 196 ------PER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL---------SLEKLQ 255 (396)
T ss_pred ------ccc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC---------CHHHHH
Confidence 010 011 22467899999998663333344555665553 567777774432 001111
Q ss_pred Hhhc-------------------CCcceeeccC-hhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHH
Q 012678 327 EMLD-------------------GRGHIVKWAP-QQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNAR 386 (458)
Q Consensus 327 ~~~~-------------------~~~~~~~~ip-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 386 (458)
.... ++..+..+.. ..+++..+++ +|+-+|..| .|++..|+|+|++|.-..|. |+.
T Consensus 256 ~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~ 331 (396)
T TIGR03492 256 AILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYG 331 (396)
T ss_pred HHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHH
Confidence 1110 1133445544 4669999999 999999766 99999999999999877786 987
Q ss_pred HHHHHH----hcceecCCcccHHHHHHHHHHHhccchhHHHHHHHH-HHHHHHHHHHhhCCChHHHHHHHHH
Q 012678 387 YVSHVW----RVGLHLERKFERREIETAIRRVTVEAEGQEMRERIM-HLKEKLELSLLEAGSSYQSLERLVD 453 (458)
Q Consensus 387 ~v~~~~----G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~g~~~~~~~~~~~ 453 (458)
..++ . |.+..+.. .+.+.|.+++.++++| +..+++.. ..+.++ ...+.+.+.++.+.+
T Consensus 332 ~~~~-~~~l~g~~~~l~~-~~~~~l~~~l~~ll~d---~~~~~~~~~~~~~~l----g~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 332 FAEA-QSRLLGGSVFLAS-KNPEQAAQVVRQLLAD---PELLERCRRNGQERM----GPPGASARIAESILK 394 (396)
T ss_pred HHHh-hHhhcCCEEecCC-CCHHHHHHHHHHHHcC---HHHHHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence 7765 2 55666554 5569999999999998 55554433 222222 244555555555544
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.55 E-value=2.3e-16 Score=133.42 Aligned_cols=135 Identities=20% Similarity=0.247 Sum_probs=95.0
Q ss_pred EEEEEcCccccCCH-HHHHHHHHHHHh--CCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccC-hhhhhcCC
Q 012678 273 VMYVSFGSIVVVNV-TEFLEIAWGLAN--SRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAP-QQEVLAHP 348 (458)
Q Consensus 273 ~i~vs~Gs~~~~~~-~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip-q~~ll~~~ 348 (458)
+|+|+.||...... ..+..+...+.. ...++++.++.... ......+ .+...++.+.+|++ ..+++..+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~------~~~~~~~-~~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY------EELKIKV-ENFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC------HHHCCCH-CCTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH------HHHHHHH-hccCCcEEEEechhhHHHHHHHc
Confidence 48999998775211 112222333332 24788888876531 1011111 11114567889999 67899999
Q ss_pred CccccccccCchhHHHHHhhCCccccccccc----chhhHHHHHHHHHhcceecCC-cccHHHHHHHHHHHhcc
Q 012678 349 AVGGFWTHNGWNSTLESICEGVPMICQPCFG----DQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVTVE 417 (458)
Q Consensus 349 ~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~~i~~ll~~ 417 (458)
++ +|||||.||++|++++|+|+|++|... +|..||..+++. |+|..+.. ..+.+.|.++|.+++++
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcccCCHHHHHHHHHHHHcC
Confidence 99 999999999999999999999999988 999999999995 99999988 77899999999999998
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.52 E-value=4.5e-12 Score=122.21 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=91.8
Q ss_pred CCCcEEEEEcCccccCCHHHHHHHHHHHHh---------CCCceEEEEcCCCCCCCcccCCCchhHHHh-hcCCcceeec
Q 012678 269 AAKSVMYVSFGSIVVVNVTEFLEIAWGLAN---------SRVPFLWVVRPGLVPGVEWLEPLPKGFLEM-LDGRGHIVKW 338 (458)
Q Consensus 269 ~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~---------~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 338 (458)
+++++|++..|+..... +..+++++.. .+.++++.++.+. .+-+.+.+. ...++.+.+|
T Consensus 204 ~~~~~il~~Gg~~g~~~---~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~--------~~~~~L~~~~~~~~v~~~G~ 272 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGP---LEETARALGDSLYDKNLGKPIGQVVVICGRNK--------KLQSKLESRDWKIPVKVRGF 272 (382)
T ss_pred CCCcEEEEECCCccccc---HHHHHHHHHHhhccccccCCCceEEEEECCCH--------HHHHHHHhhcccCCeEEEec
Confidence 45677877777655422 3333343332 2345566665431 011222211 1235677899
Q ss_pred cCh-hhhhcCCCccccccccCchhHHHHHhhCCcccccccccchh-hHHHHHHHHHhcceecCCcccHHHHHHHHHHHhc
Q 012678 339 APQ-QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQL-VNARYVSHVWRVGLHLERKFERREIETAIRRVTV 416 (458)
Q Consensus 339 ipq-~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~ 416 (458)
+++ .+++..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.. -++++|.++|.++++
T Consensus 273 ~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~---~~~~~la~~i~~ll~ 346 (382)
T PLN02605 273 VTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS---ESPKEIARIVAEWFG 346 (382)
T ss_pred cccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec---CCHHHHHHHHHHHHc
Confidence 986 559999999 999999999999999999999998766664 799999985 999865 488999999999998
Q ss_pred c
Q 012678 417 E 417 (458)
Q Consensus 417 ~ 417 (458)
+
T Consensus 347 ~ 347 (382)
T PLN02605 347 D 347 (382)
T ss_pred C
Confidence 6
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.47 E-value=1.9e-10 Score=110.06 Aligned_cols=111 Identities=21% Similarity=0.242 Sum_probs=78.3
Q ss_pred cCCcceeeccChhh---hhcCCCccccccccC----chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcc
Q 012678 330 DGRGHIVKWAPQQE---VLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKF 402 (458)
Q Consensus 330 ~~~~~~~~~ipq~~---ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 402 (458)
.+|+.+.+|+++.+ ++..+++ +|+.+. .+++.||+++|+|+|+.+..+ +...+++. +.|...+. .
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~-~ 317 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEP-G 317 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCC-C
Confidence 35668889999755 7889998 887654 378999999999999887553 56667773 88887775 5
Q ss_pred cHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 403 ERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 403 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
+.+++.++|.++++| +..+++..+-+.+.. ..-+..+.++++++.+
T Consensus 318 ~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 318 DAEAFAAALAALLAD---PELRRRMAARARAEA----ERRSWEAFLDNLLEAY 363 (364)
T ss_pred CHHHHHHHHHHHHcC---HHHHHHHHHHHHHHH----hhcCHHHHHHHHHHhh
Confidence 778899999999998 444333332222221 2345666677766654
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.45 E-value=3e-10 Score=112.62 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=87.8
Q ss_pred cEEEEEcCccccCCHHHHHHHHHHHHhC-CCceEEEEcCCCCCCCcccCCCchhHHHhhc-CCcceeeccChhh---hhc
Q 012678 272 SVMYVSFGSIVVVNVTEFLEIAWGLANS-RVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD-GRGHIVKWAPQQE---VLA 346 (458)
Q Consensus 272 ~~i~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ipq~~---ll~ 346 (458)
..+++..|+.. ..+.+..++++++.. +.+++++ +.+. ..+.+.+... .++.+.+|+|+.+ ++.
T Consensus 263 ~~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~iv-G~G~---------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~ 330 (465)
T PLN02871 263 KPLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFV-GDGP---------YREELEKMFAGTPTVFTGMLQGDELSQAYA 330 (465)
T ss_pred CeEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEE-eCCh---------HHHHHHHHhccCCeEEeccCCHHHHHHHHH
Confidence 34556668765 445567778888776 4454443 3221 1122322222 4567889998654 788
Q ss_pred CCCccccccccC----chhHHHHHhhCCcccccccccchhhHHHHHHH---HHhcceecCCcccHHHHHHHHHHHhccch
Q 012678 347 HPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSH---VWRVGLHLERKFERREIETAIRRVTVEAE 419 (458)
Q Consensus 347 ~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~---~~G~G~~l~~~~~~~~l~~~i~~ll~~~~ 419 (458)
.+++ +|.-.. ..++.||+++|+|+|+.... .....+++ . +.|...+. -+++++.++|.++++|.+
T Consensus 331 ~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-~d~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 331 SGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-GDVDDCVEKLETLLADPE 402 (465)
T ss_pred HCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-CCHHHHHHHHHHHHhCHH
Confidence 8888 885433 35789999999999987643 23445554 4 67887765 578999999999998832
Q ss_pred -hHHHHHHHHH
Q 012678 420 -GQEMRERIMH 429 (458)
Q Consensus 420 -~~~~~~~a~~ 429 (458)
...+.+++++
T Consensus 403 ~~~~~~~~a~~ 413 (465)
T PLN02871 403 LRERMGAAARE 413 (465)
T ss_pred HHHHHHHHHHH
Confidence 2334444443
No 46
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.34 E-value=5.6e-09 Score=101.47 Aligned_cols=338 Identities=12% Similarity=0.074 Sum_probs=164.6
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhcCh
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVV 95 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (458)
||+|+--...|. +-.||+.|+++||+|++++......... |++.+.++....... ........+.........
T Consensus 1 ~il~~~~~~p~~---~~~la~~L~~~G~~v~~~~~~~~~~~~~---~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 73 (396)
T cd03818 1 RILFVHQNFPGQ---FRHLAPALAAQGHEVVFLTEPNAAPPPG---GVRVVRYRPPRGPTS-GTHPYLREFEEAVLRGQA 73 (396)
T ss_pred CEEEECCCCchh---HHHHHHHHHHCCCEEEEEecCCCCCCCC---CeeEEEecCCCCCCC-CCCccchhHHHHHHHHHH
Confidence 577776666665 4579999999999999998863322211 577777764322111 111111122111111112
Q ss_pred hHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHc-CCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCcccc
Q 012678 96 PFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTL-RLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLEKPV 174 (458)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 174 (458)
+...+..+... + ++||+|++......+..+.+.+ ++|.+.+....... . +.+. ...
T Consensus 74 -~~~~~~~~~~~-~--~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~~~~~~-----------------~-~~~~-~~~ 130 (396)
T cd03818 74 -VARALLALRAK-G--FRPDVIVAHPGWGETLFLKDVWPDAPLIGYFEFYYRA-----------------E-GADV-GFD 130 (396)
T ss_pred -HHHHHHHHHhc-C--CCCCEEEECCccchhhhHHHhCCCCCEEEEEeeeecC-----------------C-CCCC-CCC
Confidence 22233333222 1 6899999997666666677665 58888865441110 0 0000 000
Q ss_pred CCCCCCCCCCCCCcccCCCchHHHHHH---HHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCC--ccccCCccccccc
Q 012678 175 TELPPLRVKDIPIIVTHDTRNFHQLIS---AVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIP--MFPIGPFHKYCLA 249 (458)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p--v~~vGpl~~~~~~ 249 (458)
+.. + .......+... .....+..++.++..|....+. +++.+..+ +++-|--......
T Consensus 131 ~~~--------~----~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~-----~~~~~~~ki~vI~ngvd~~~f~~ 193 (396)
T cd03818 131 PEF--------P----PSLDDALRLRNRNALILLALAQADAGVSPTRWQRST-----FPAELRSRISVIHDGIDTDRLRP 193 (396)
T ss_pred CCC--------C----CchhHHHHHHHhhhHhHHHHHhCCEEECCCHHHHhh-----CcHhhccceEEeCCCccccccCC
Confidence 000 0 00000011111 1223467788888877654432 11111223 3333321110000
Q ss_pred cCCCcccCc-cccchhhccCCCCcEEEEEcCc-cccCCHHHHHHHHHHHHhC-----CCceEEEEcCCCCCCCcccCCCc
Q 012678 250 SSSSLLSQD-QSCISWLDKQAAKSVMYVSFGS-IVVVNVTEFLEIAWGLANS-----RVPFLWVVRPGLVPGVEWLEPLP 322 (458)
Q Consensus 250 ~~~~~~~~~-~~~~~~l~~~~~~~~i~vs~Gs-~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~ 322 (458)
.+.. .....-..-.+++ .+++..|. .. +.+.+..+++|+... +.+++++-++....+.. ....+
T Consensus 194 -----~~~~~~~~~~~~~~~~~~-~~i~~vgR~l~--~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~-~~~~~ 264 (396)
T cd03818 194 -----DPQARLRLPNGRVLTPGD-EVITFVARNLE--PYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAP-PPDGE 264 (396)
T ss_pred -----CchhhhcccccccCCCCC-eEEEEECCCcc--cccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCC-CCCcc
Confidence 0000 0000000001122 33444453 33 233444455554432 33444433211100000 00011
Q ss_pred ---hhHHHhh-----cCCcceeeccChhh---hhcCCCcccccc---ccCc-hhHHHHHhhCCcccccccccchhhHHHH
Q 012678 323 ---KGFLEML-----DGRGHIVKWAPQQE---VLAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFGDQLVNARY 387 (458)
Q Consensus 323 ---~~~~~~~-----~~~~~~~~~ipq~~---ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~ 387 (458)
+.+.+.. .+++.+.+++|+.+ ++..+++ +|. +.|. .++.||+++|+|+|+.. .......
T Consensus 265 ~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~ 338 (396)
T cd03818 265 SWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREV 338 (396)
T ss_pred cHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhh
Confidence 1111211 25677889999765 6778888 653 2333 48999999999999864 4456666
Q ss_pred HHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 388 VSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 388 v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
+.+. ..|...+. -+++++.++|.++++|
T Consensus 339 i~~~-~~G~lv~~-~d~~~la~~i~~ll~~ 366 (396)
T cd03818 339 ITDG-ENGLLVDF-FDPDALAAAVIELLDD 366 (396)
T ss_pred cccC-CceEEcCC-CCHHHHHHHHHHHHhC
Confidence 7663 56877765 5799999999999998
No 47
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.33 E-value=4.9e-09 Score=102.49 Aligned_cols=164 Identities=12% Similarity=0.075 Sum_probs=96.4
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHhCC--CceEEEEcCCCCCCCcccCCCchhHHHh----hcCCcceeeccChhh-
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLANSR--VPFLWVVRPGLVPGVEWLEPLPKGFLEM----LDGRGHIVKWAPQQE- 343 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~ipq~~- 343 (458)
++.+++..|+.. +.+.+..+++|++... ..+-+.+-+.+. ..+.+.+. --+|+.+.+|+|+.+
T Consensus 228 ~~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~ivG~g~--------~~~~l~~~~~~~~l~~v~f~G~~~~~~~ 297 (412)
T PRK10307 228 GKKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFVICGQGG--------GKARLEKMAQCRGLPNVHFLPLQPYDRL 297 (412)
T ss_pred CCEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEEEECCCh--------hHHHHHHHHHHcCCCceEEeCCCCHHHH
Confidence 445666678876 4445666666666532 123233322210 11222211 114678889998654
Q ss_pred --hhcCCCccccccccCc------hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHh
Q 012678 344 --VLAHPAVGGFWTHNGW------NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT 415 (458)
Q Consensus 344 --ll~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll 415 (458)
++..+++-++.+..+. +.+.|++++|+|+|+....+.. ....++ +.|...+. -+.+++.++|.+++
T Consensus 298 ~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~-~d~~~la~~i~~l~ 371 (412)
T PRK10307 298 PALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP-ESVEALVAAIAALA 371 (412)
T ss_pred HHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-CCHHHHHHHHHHHH
Confidence 7888888444444332 3478999999999998754321 122232 56777765 57899999999999
Q ss_pred ccch-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 416 VEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 416 ~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
+|.+ .+.+++++++..+ +.=+..+.++.+++.+++
T Consensus 372 ~~~~~~~~~~~~a~~~~~-------~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 372 RQALLRPKLGTVAREYAE-------RTLDKENVLRQFIADIRG 407 (412)
T ss_pred hCHHHHHHHHHHHHHHHH-------HHcCHHHHHHHHHHHHHH
Confidence 8832 2344444444332 334567777777777765
No 48
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.32 E-value=2.1e-13 Score=111.69 Aligned_cols=128 Identities=17% Similarity=0.170 Sum_probs=78.1
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCC--CCCCccCcccHHHHHHH--HHHh
Q 012678 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISES--LWESEVSTENAISLLTV--LNDK 92 (458)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~ 92 (458)
|+|.+.|+.||++|+++||++|++|||+|++++++....... ..|++|+.++.. ................. ....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVE-AAGLEFVPIPGDSRLPRSLEPLANLRRLARLIRGLEE 79 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHH-HTT-EEEESSSCGGGGHHHHHHHHHHCHHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccc-ccCceEEEecCCcCcCcccchhhhhhhHHHHhhhhhH
Confidence 789999999999999999999999999999999875544443 378999998865 11000000111111111 1111
Q ss_pred cChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchH
Q 012678 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSI 145 (458)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 145 (458)
+...+.+...+......++..+|+++.+.....+..+|+++|||++.....+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 80 AMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred HHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 11122221111111111114678888888888899999999999999877754
No 49
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.29 E-value=2.1e-09 Score=103.50 Aligned_cols=165 Identities=14% Similarity=0.069 Sum_probs=98.2
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHh----CCCceEEEEcCCCCCCCcccCCCchhHHH-hhcCCcceeeccCh-hhh
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLAN----SRVPFLWVVRPGLVPGVEWLEPLPKGFLE-MLDGRGHIVKWAPQ-QEV 344 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~----~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ipq-~~l 344 (458)
+..+++.+|.... .+.+..++++++. .+.++++...+.. ...+-+.+.. ...+++.+.++.++ ..+
T Consensus 196 ~~~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~G~g~~------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 267 (371)
T cd04962 196 GEKVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLVGDGPE------RSPAERLARELGLQDDVLFLGKQDHVEEL 267 (371)
T ss_pred CCeEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEEcCCcC------HHHHHHHHHHcCCCceEEEecCcccHHHH
Confidence 3456667777663 3444445555443 2445544433211 1111111111 12345677787775 458
Q ss_pred hcCCCccccccc----cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccch-
Q 012678 345 LAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAE- 419 (458)
Q Consensus 345 l~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~- 419 (458)
+..+++ +|.- |...++.||+++|+|+|+... ...+..+++. ..|...+. -+.+++.++|.+++++.+
T Consensus 268 ~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~-~~~~~l~~~i~~l~~~~~~ 339 (371)
T cd04962 268 LSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV-GDVEAMAEYALSLLEDDEL 339 (371)
T ss_pred HHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC-CCHHHHHHHHHHHHhCHHH
Confidence 888888 7632 334699999999999998643 4466677763 67776665 578999999999998732
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012678 420 GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 458 (458)
Q Consensus 420 ~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (458)
...+++++++.. . ..=+....++++.+.++++
T Consensus 340 ~~~~~~~~~~~~---~----~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 340 WQEFSRAARNRA---A----ERFDSERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHHHHHH---H----HhCCHHHHHHHHHHHHHhC
Confidence 234444444431 1 3345777778887777653
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.28 E-value=2.7e-09 Score=102.94 Aligned_cols=330 Identities=15% Similarity=0.088 Sum_probs=163.1
Q ss_pred EEEEEcCCC----CcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC--------CCCCceEEecCCCCCCCccCcccHH
Q 012678 16 RVILFPLPL----QGHINPMLQLASILYSKGFSITIIHTNFNSPNPS--------NYPHFSFNSISESLWESEVSTENAI 83 (458)
Q Consensus 16 ~il~~~~~~----~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (458)
||++++... .|+-..+..+++.|+++||+|++++......... ...++.+..++....... ....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 77 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKN---GLLK 77 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCcc---chHH
Confidence 466665542 3899999999999999999999998753322211 124555555543211110 0001
Q ss_pred HHHHHHHHhcChhHHHHHHHHh-hCCCCCCCeeEEEecC-ch---hhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHH
Q 012678 84 SLLTVLNDKCVVPFQDCLAKLI-SNGDQEEPVTCLITDA-IW---HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILL 158 (458)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~-~~~~~~~~pDlvI~D~-~~---~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 158 (458)
..... .... ......+. .. .+||+|+... .. ..+..++...++|++........... .
T Consensus 78 ~~~~~-~~~~----~~~~~~~~~~~----~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--------~ 140 (394)
T cd03794 78 RLLNY-LSFA----LSALLALLKRR----RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESA--------V 140 (394)
T ss_pred HHHhh-hHHH----HHHHHHHHhcc----cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhH--------H
Confidence 11111 0100 11111121 11 6899999986 22 23344566669999875543110000 0
Q ss_pred HhcCCCccCCCCccccCCCCCCCCCCCCCcccCCCchHHHHHHHHH-hhccCccEEEEcChhhhhHHHHHHhhhcC-CCC
Q 012678 159 EKGYLAEQDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVV-SKTKACSGLIWNSFEDLEQTELTRLHKDF-PIP 236 (458)
Q Consensus 159 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~~~~~-~~p 236 (458)
..... .......+...... .....++.++..|....+.-. .... ..+
T Consensus 141 ~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~----~~~~~~~~ 189 (394)
T cd03794 141 ALGLL---------------------------KNGSLLYRLLRKLERLIYRRADAIVVISPGMREYLV----RRGVPPEK 189 (394)
T ss_pred HccCc---------------------------cccchHHHHHHHHHHHHHhcCCEEEEECHHHHHHHH----hcCCCcCc
Confidence 00000 00000112222222 234667778777765544321 0111 123
Q ss_pred ccccCCccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHh---C-CCceEEEEcCCCC
Q 012678 237 MFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLAN---S-RVPFLWVVRPGLV 312 (458)
Q Consensus 237 v~~vGpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~---~-~~~~i~~~~~~~~ 312 (458)
+..+......... ............. ..+++.+++..|+... .+....++++++. . +.++++ ++.+..
T Consensus 190 ~~~i~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~i~~~G~~~~--~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~~ 261 (394)
T cd03794 190 ISVIPNGVDLELF---KPPPADESLRKEL--GLDDKFVVLYAGNIGR--AQGLDTLLEAAALLKDRPDIRFLI-VGDGPE 261 (394)
T ss_pred eEEcCCCCCHHHc---CCccchhhhhhcc--CCCCcEEEEEecCccc--ccCHHHHHHHHHHHhhcCCeEEEE-eCCccc
Confidence 4444422221110 0000000001111 1245577777888664 2233444444443 3 334433 332210
Q ss_pred CCCcccCCCchhHHHhhcCCcceeeccChhh---hhcCCCccccccccC---------chhHHHHHhhCCcccccccccc
Q 012678 313 PGVEWLEPLPKGFLEMLDGRGHIVKWAPQQE---VLAHPAVGGFWTHNG---------WNSTLESICEGVPMICQPCFGD 380 (458)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~---ll~~~~~~~~I~HgG---------~~s~~eal~~GvP~l~~P~~~D 380 (458)
...+.+.+.....+|+.+.+++++.+ ++..+++ +|.... -+++.||+++|+|+|+.+..+.
T Consensus 262 -----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~ 334 (394)
T cd03794 262 -----KEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGES 334 (394)
T ss_pred -----HHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCc
Confidence 00011111112235677889998654 6788888 764322 2347999999999999877654
Q ss_pred hhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 381 QLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 381 Q~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
+ ..+.+ .+.|...+. -+.+++.++|.++++|
T Consensus 335 ~----~~~~~-~~~g~~~~~-~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 335 A----ELVEE-AGAGLVVPP-GDPEALAAAILELLDD 365 (394)
T ss_pred h----hhhcc-CCcceEeCC-CCHHHHHHHHHHHHhC
Confidence 3 33444 266776665 4789999999999987
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.28 E-value=9.2e-09 Score=98.19 Aligned_cols=130 Identities=17% Similarity=0.151 Sum_probs=82.0
Q ss_pred CCcEEEEEcCccccCCHHHHHHHHHHHHhC---CCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhh---
Q 012678 270 AKSVMYVSFGSIVVVNVTEFLEIAWGLANS---RVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQE--- 343 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~--- 343 (458)
.++.+++..|+... .+.+..++++++.. +.++++. +..... ..........+++.+.+|+++.+
T Consensus 189 ~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~-G~~~~~-------~~~~~~~~~~~~v~~~g~~~~~~~~~ 258 (359)
T cd03823 189 GGRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIV-GNGLEL-------EEESYELEGDPRVEFLGAYPQEEIDD 258 (359)
T ss_pred CCceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEE-cCchhh-------hHHHHhhcCCCeEEEeCCCCHHHHHH
Confidence 44566777788654 23344455555543 3444443 332100 00000001235667889997655
Q ss_pred hhcCCCccccccc----cCc-hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 344 VLAHPAVGGFWTH----NGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 344 ll~~~~~~~~I~H----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
++..+++ +|+. .|. .++.||+++|+|+|+.+. ..+...+.+. +.|...+. -+.+++.++|.++++|
T Consensus 259 ~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 259 FYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP-GDAEDLAAALERLIDD 329 (359)
T ss_pred HHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-CCHHHHHHHHHHHHhC
Confidence 6888888 7732 333 589999999999998754 3466677763 67887776 4689999999999998
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.27 E-value=4.1e-09 Score=102.49 Aligned_cols=326 Identities=14% Similarity=0.088 Sum_probs=162.6
Q ss_pred CcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCC---CCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhcChhHHHHH
Q 012678 25 QGHINPMLQLASILYSKGFSITIIHTNFNSPN---PSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDCL 101 (458)
Q Consensus 25 ~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 101 (458)
.|.-..+..|+++|+++||+|++++....... .....++.+..++.... ...........+..+ ...++
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~ 92 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPA-EYLPKEELWPYLDEF-------ADDLL 92 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccc-cCCChhhcchhHHHH-------HHHHH
Confidence 37888999999999999999999986433221 11224666666553111 000001111111111 11122
Q ss_pred HHHhhCCCCCCCeeEEEecCch--hhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCccccCCCCC
Q 012678 102 AKLISNGDQEEPVTCLITDAIW--HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLEKPVTELPP 179 (458)
Q Consensus 102 ~~l~~~~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 179 (458)
..+.... .+||+|++.... ..+..++..+++|+|......... .. ....
T Consensus 93 ~~~~~~~---~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~----------------~~---------~~~~- 143 (398)
T cd03800 93 RFLRREG---GRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAV----------------KR---------RHLG- 143 (398)
T ss_pred HHHHhcC---CCccEEEEecCccchHHHHHHhhcCCceEEEeeccccc----------------CC---------cccc-
Confidence 2222210 279999987533 445677888999988653321000 00 0000
Q ss_pred CCCCCCCCcccCCCchHHHHHHHHHhhccCccEEEEcChhhhhHHHHHHhhhcCCCCccccCCccccccccCCCcccCcc
Q 012678 180 LRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPFHKYCLASSSSLLSQDQ 259 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~~~~~~~~ 259 (458)
.. .. ................++.++..|....+.-. ..... -...+..+.+-.....- .......
T Consensus 144 ~~---------~~-~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~-~~~~~-~~~~~~vi~ng~~~~~~---~~~~~~~ 208 (398)
T cd03800 144 AA---------DT-YEPARRIEAEERLLRAADRVIASTPQEAEELY-SLYGA-YPRRIRVVPPGVDLERF---TPYGRAE 208 (398)
T ss_pred cc---------cc-cchhhhhhHHHHHHhhCCEEEEcCHHHHHHHH-HHccc-cccccEEECCCCCccce---ecccchh
Confidence 00 00 00000111112234677888887765433211 10000 01113333322211100 0000000
Q ss_pred ccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhC-----CCceEEEEcCCCCCCCcccCCCch---hHHHh--h
Q 012678 260 SCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANS-----RVPFLWVVRPGLVPGVEWLEPLPK---GFLEM--L 329 (458)
Q Consensus 260 ~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~---~~~~~--~ 329 (458)
.....+.. +.+..+++..|+... .+.+..+++++... +.++++..++.. .. ...... .+.+. .
T Consensus 209 ~~~~~~~~-~~~~~~i~~~gr~~~--~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~-~~---~~~~~~~~~~~~~~~~~ 281 (398)
T cd03800 209 ARRARLLR-DPDKPRILAVGRLDP--RKGIDTLIRAYAELPELRERANLVIVGGPRD-DI---LAMDEEELRELARELGV 281 (398)
T ss_pred hHHHhhcc-CCCCcEEEEEccccc--ccCHHHHHHHHHHHHHhCCCeEEEEEECCCC-cc---hhhhhHHHHHHHHhcCC
Confidence 00111111 233466677788664 23344455555443 344555443321 10 000001 11111 2
Q ss_pred cCCcceeeccChhh---hhcCCCcccccccc----CchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcc
Q 012678 330 DGRGHIVKWAPQQE---VLAHPAVGGFWTHN----GWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKF 402 (458)
Q Consensus 330 ~~~~~~~~~ipq~~---ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 402 (458)
.+++.+.+|+|+.+ ++..+++ +++.+ -..++.||+++|+|+|+.... .....+++. +.|...+. -
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-~ 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-R 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC-C
Confidence 25667889999765 5888888 77542 236899999999999887543 356667773 78888775 5
Q ss_pred cHHHHHHHHHHHhcc
Q 012678 403 ERREIETAIRRVTVE 417 (458)
Q Consensus 403 ~~~~l~~~i~~ll~~ 417 (458)
+.+++.++|.+++++
T Consensus 354 ~~~~l~~~i~~l~~~ 368 (398)
T cd03800 354 DPEALAAALRRLLTD 368 (398)
T ss_pred CHHHHHHHHHHHHhC
Confidence 799999999999988
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.25 E-value=6.9e-09 Score=101.20 Aligned_cols=343 Identities=14% Similarity=0.106 Sum_probs=173.2
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCC--CCCCCceEEecCCCCCCCccCcccHHHHHHHHH
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNP--SNYPHFSFNSISESLWESEVSTENAISLLTVLN 90 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (458)
+..||++++..-.|+-..+..+|++|+++||+|++++........ ....++.++.++..-. .. ......+....
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~---~~~~~~~~~~~ 77 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQ-RL---NKLPFLLFAPL 77 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCcc-cc---ccchHHHHHHH
Confidence 345788888877788888999999999999999999875322111 2235777777754210 01 11111111111
Q ss_pred HhcChhHHHHHHHHhhCCCCCCCeeEEEecC-ch----hhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCc
Q 012678 91 DKCVVPFQDCLAKLISNGDQEEPVTCLITDA-IW----HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAE 165 (458)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~-~~----~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 165 (458)
.... .+..++..+... .+||+|++.. .. ..+..++...++|.|.......... . ....
T Consensus 78 ~~~~-~~~~~~~~l~~~----~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~--~-------~~~~--- 140 (415)
T cd03816 78 KVLW-QFFSLLWLLYKL----RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTI--L-------ALKL--- 140 (415)
T ss_pred HHHH-HHHHHHHHHHhc----CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHH--H-------hccc---
Confidence 1111 111222223332 5799999743 21 1244456667999887544321100 0 0000
Q ss_pred cCCCCccccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhh-ccCccEEEEcChhhhhHHHHHHhhhcCCCC--ccccCC
Q 012678 166 QDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSK-TKACSGLIWNSFEDLEQTELTRLHKDFPIP--MFPIGP 242 (458)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~p--v~~vGp 242 (458)
............+... .+.++.++..|...-+.- .. ... ...+ +++-|+
T Consensus 141 -------------------------~~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~~l-~~-~~~-~~~ki~vI~Ng~ 192 (415)
T cd03816 141 -------------------------GENHPLVRLAKWYEKLFGRLADYNLCVTKAMKEDL-QQ-FNN-WKIRATVLYDRP 192 (415)
T ss_pred -------------------------CCCCHHHHHHHHHHHHHhhcCCEeeecCHHHHHHH-Hh-hhc-cCCCeeecCCCC
Confidence 0011111222222222 355777777776543321 11 000 0122 333232
Q ss_pred ccccccccCCCcccCccccchhh----------------ccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCC------
Q 012678 243 FHKYCLASSSSLLSQDQSCISWL----------------DKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSR------ 300 (458)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~~~l----------------~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~------ 300 (458)
.. ... +.+.......+. ...+++..++++.|.... .+.+..+++|++...
T Consensus 193 ~~-~f~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~--~K~~~~li~A~~~l~~~~~~~ 264 (415)
T cd03816 193 PE-QFR-----PLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTP--DEDFGILLDALVAYEKSAATG 264 (415)
T ss_pred HH-Hce-----eCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccC--CCCHHHHHHHHHHHHHhhccc
Confidence 10 000 000000000010 001244566666777553 344555555554421
Q ss_pred ---CceEE-EEcCCCCCCCcccCCCchhHHHhh---c-CCccee-eccChhh---hhcCCCcccccc-c---cC---chh
Q 012678 301 ---VPFLW-VVRPGLVPGVEWLEPLPKGFLEML---D-GRGHIV-KWAPQQE---VLAHPAVGGFWT-H---NG---WNS 361 (458)
Q Consensus 301 ---~~~i~-~~~~~~~~~~~~~~~l~~~~~~~~---~-~~~~~~-~~ipq~~---ll~~~~~~~~I~-H---gG---~~s 361 (458)
..+.+ .+|.+. .-+.+.+.. . +++.+. +|+|..+ +|..+++ +|. + -| -++
T Consensus 265 ~~~~~i~l~ivG~G~---------~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~ 333 (415)
T cd03816 265 PKLPKLLCIITGKGP---------LKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMK 333 (415)
T ss_pred ccCCCEEEEEEecCc---------cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHH
Confidence 12333 333321 112222211 1 344444 6888655 6888898 663 1 12 357
Q ss_pred HHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc---ch-hHHHHHHHHHHH
Q 012678 362 TLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE---AE-GQEMRERIMHLK 431 (458)
Q Consensus 362 ~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~---~~-~~~~~~~a~~~~ 431 (458)
+.||+++|+|+|+... ......+++. +.|.... +++++.++|.++++| .+ ...+++++++..
T Consensus 334 ~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~---d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 334 VVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG---DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 9999999999998643 3566777774 7888773 799999999999987 32 456666666655
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.25 E-value=9.3e-09 Score=98.61 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=65.9
Q ss_pred cCCcceeeccChhh---hhcCCCcccccccc----CchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcc
Q 012678 330 DGRGHIVKWAPQQE---VLAHPAVGGFWTHN----GWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKF 402 (458)
Q Consensus 330 ~~~~~~~~~ipq~~---ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 402 (458)
.+++.+.+++|+.+ ++..+++ +|..+ ...++.||+++|+|+|+... ...+..+++. +.|..++. .
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~-~ 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP-G 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC-C
Confidence 35677889999755 6888888 77433 34789999999999998653 4456777773 77887776 2
Q ss_pred cHHHHHHHHHHHhccch-hHHHHHHHHHHHH
Q 012678 403 ERREIETAIRRVTVEAE-GQEMRERIMHLKE 432 (458)
Q Consensus 403 ~~~~l~~~i~~ll~~~~-~~~~~~~a~~~~~ 432 (458)
+. ++.++|.+++++.+ .+.+++++++...
T Consensus 330 ~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 359 (374)
T cd03817 330 DE-ALAEALLRLLQDPELRRRLSKNAEESAE 359 (374)
T ss_pred CH-HHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 22 99999999999832 2334444444443
No 55
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=1.1e-09 Score=94.81 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=104.2
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhc--CCcceeeccC-hhhhhcC
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD--GRGHIVKWAP-QQEVLAH 347 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~ip-q~~ll~~ 347 (458)
+.-|+||+|..- +......++..+.+.++.+-.+++.. .+-+++..++.. +|..+..... ...++..
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~--------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke 227 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS--------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKE 227 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC--------CcchhHHHHHHhhCCCeeeEecchhHHHHHHh
Confidence 446899998744 44456677888887775555555521 123344444333 4444545454 3459999
Q ss_pred CCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccchhHHHHHHH
Q 012678 348 PAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQEMRERI 427 (458)
Q Consensus 348 ~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a 427 (458)
|++ .|+-|| .|+.|++.-|+|.+++|+.-.|---|...+. +|+-..+.-.++.+.+..-+..+.+| ...|.+.
T Consensus 228 ~d~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~l~~~~~~~~~~~i~~d---~~~rk~l 300 (318)
T COG3980 228 ADL--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYHLKDLAKDYEILQIQKD---YARRKNL 300 (318)
T ss_pred cch--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCCCchHHHHHHHHHhhhC---HHHhhhh
Confidence 999 999887 5999999999999999999999999999999 58877776567888888889999988 5666554
Q ss_pred HHHHH
Q 012678 428 MHLKE 432 (458)
Q Consensus 428 ~~~~~ 432 (458)
-..++
T Consensus 301 ~~~~~ 305 (318)
T COG3980 301 SFGSK 305 (318)
T ss_pred hhccc
Confidence 44433
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.20 E-value=3.2e-08 Score=94.46 Aligned_cols=336 Identities=15% Similarity=0.077 Sum_probs=173.3
Q ss_pred CcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCC-CCceEEecCCCCCCCccCcccHHHHHHHHHHhcChhHHHHHHH
Q 012678 25 QGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNY-PHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDCLAK 103 (458)
Q Consensus 25 ~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 103 (458)
.|+...+..+++.|.+.||+|++++........... ........ ........... . ......+..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~------~~~~~~~~~ 79 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRP-------PPLLRVRRLLL-L------LLLALRLRR 79 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecC-------CcccccchhHH-H------HHHHHHHHH
Confidence 588999999999999999999999986332221110 00000000 00000000000 0 001111222
Q ss_pred HhhCCCCCCCeeEEEecCchhhHH--HHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCccccCCCCCCC
Q 012678 104 LISNGDQEEPVTCLITDAIWHFAQ--TVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLEKPVTELPPLR 181 (458)
Q Consensus 104 l~~~~~~~~~pDlvI~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 181 (458)
+... .++|+|+......... ..+...++|.+.............
T Consensus 80 ~~~~----~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~------------------------------ 125 (374)
T cd03801 80 LLRR----ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGN------------------------------ 125 (374)
T ss_pred Hhhh----cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcccc------------------------------
Confidence 2222 5799999887654433 477888999987655522110000
Q ss_pred CCCCCCcccCCCchHHHHHH-HHHhhccCccEEEEcChhhhhHHHHHHhhhcCCC---CccccCCccccccccCCCcccC
Q 012678 182 VKDIPIIVTHDTRNFHQLIS-AVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPI---PMFPIGPFHKYCLASSSSLLSQ 257 (458)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~---pv~~vGpl~~~~~~~~~~~~~~ 257 (458)
.......... ........++.++..|....+.- ...+.. ++..+..-...... . +.
T Consensus 126 ----------~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~---~--~~ 185 (374)
T cd03801 126 ----------ELGLLLKLARALERRALRRADRIIAVSEATREEL-----RELGGVPPEKITVIPNGVDTERF---R--PA 185 (374)
T ss_pred ----------chhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHH-----HhcCCCCCCcEEEecCccccccc---C--cc
Confidence 0000011111 12233456777777776544332 222222 34444322211110 0 00
Q ss_pred ccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCC---CceE-EEEcCCCCCCCcccCCCchhHHH-----h
Q 012678 258 DQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSR---VPFL-WVVRPGLVPGVEWLEPLPKGFLE-----M 328 (458)
Q Consensus 258 ~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~---~~~i-~~~~~~~~~~~~~~~~l~~~~~~-----~ 328 (458)
......-. ....+...++.+|+.. ..+.+..+++++.... ..+- +.++... ....+.. .
T Consensus 186 ~~~~~~~~-~~~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~---------~~~~~~~~~~~~~ 253 (374)
T cd03801 186 PRAARRRL-GIPEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVIVGDGP---------LREELEALAAELG 253 (374)
T ss_pred chHHHhhc-CCcCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH---------HHHHHHHHHHHhC
Confidence 00000111 1123446677778766 3334455555555432 1232 2233211 1111111 1
Q ss_pred hcCCcceeeccChhh---hhcCCCcccccc----ccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCc
Q 012678 329 LDGRGHIVKWAPQQE---VLAHPAVGGFWT----HNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERK 401 (458)
Q Consensus 329 ~~~~~~~~~~ipq~~---ll~~~~~~~~I~----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 401 (458)
..+++.+.+++++.+ ++..+++ +|+ -|..+++.||+++|+|+|+.+. ......+++. +.|...+.
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~- 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP- 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-
Confidence 345677889997544 7888888 773 2456799999999999998765 4566777764 77887775
Q ss_pred ccHHHHHHHHHHHhccchhHHHHH-HHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 402 FERREIETAIRRVTVEAEGQEMRE-RIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 402 ~~~~~l~~~i~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
.+++++.++|.+++++ +..++ ..+..++.+. ..-+.++..+++++.+
T Consensus 326 ~~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 326 GDPEALAEAILRLLDD---PELRRRLGEAARERVA----ERFSWDRVAARTEEVY 373 (374)
T ss_pred CCHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHhh
Confidence 5689999999999988 33332 2222222333 3455666777766654
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.19 E-value=6.2e-08 Score=92.20 Aligned_cols=313 Identities=15% Similarity=0.093 Sum_probs=160.6
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhcCh
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVV 95 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (458)
||++++....|+...+..++++|.++||+|++++............++.+..++.... .......+...
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------ 69 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRR-----GINPFKDLKAL------ 69 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEecccccc-----ccChHhHHHHH------
Confidence 5777777777899999999999999999999998864433212224666666653221 01111111111
Q ss_pred hHHHHHHHHhhCCCCCCCeeEEEecCch--hhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCccc
Q 012678 96 PFQDCLAKLISNGDQEEPVTCLITDAIW--HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLEKP 173 (458)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 173 (458)
..+...+.+ .+||+|++.... ..+..++...+.|.++..........
T Consensus 70 --~~~~~~~~~-----~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------------ 118 (359)
T cd03808 70 --LRLYRLLRK-----ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------------------ 118 (359)
T ss_pred --HHHHHHHHh-----cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------------------
Confidence 112222222 579999887543 23344455466665554333111000
Q ss_pred cCCCCCCCCCCCCCcccCCCchHHHHHHHHHh-hccCccEEEEcChhhhhHHHHHHhhhcCC---CCccccCCccccccc
Q 012678 174 VTELPPLRVKDIPIIVTHDTRNFHQLISAVVS-KTKACSGLIWNSFEDLEQTELTRLHKDFP---IPMFPIGPFHKYCLA 249 (458)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~le~~~~~~~~~~~~---~pv~~vGpl~~~~~~ 249 (458)
.........+..... ....++.++..|....+.- ..... .....+.|.......
T Consensus 119 -----------------~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 176 (359)
T cd03808 119 -----------------TSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLA-----LKLGIIKKKKTVLIPGSGVDLDR 176 (359)
T ss_pred -----------------ccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHHH-----HHhcCCCcCceEEecCCCCChhh
Confidence 000001111111111 2345577777776554332 11111 112222222111110
Q ss_pred cCCCcccCccccchhhccCCCCcEEEEEcCcccc-CCHHHHHHHHHHHHhC--CCceEEEEcCCCCCCCcccCCCchh-H
Q 012678 250 SSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVV-VNVTEFLEIAWGLANS--RVPFLWVVRPGLVPGVEWLEPLPKG-F 325 (458)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~l~~~-~ 325 (458)
.... ... ..+++++++..|+... .....+...+..+.+. +.++++. +.... . ...... +
T Consensus 177 -----~~~~---~~~---~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~-G~~~~-~----~~~~~~~~ 239 (359)
T cd03808 177 -----FSPS---PEP---IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLV-GDGDE-E----NPAAILEI 239 (359)
T ss_pred -----cCcc---ccc---cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEE-cCCCc-c----hhhHHHHH
Confidence 0000 000 1245577888888764 2233333333333332 2333333 32210 0 000000 1
Q ss_pred HH-hhcCCcceeeccCh-hhhhcCCCccccccccC----chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecC
Q 012678 326 LE-MLDGRGHIVKWAPQ-QEVLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLE 399 (458)
Q Consensus 326 ~~-~~~~~~~~~~~ipq-~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 399 (458)
.. ...+++.+.++..+ ..++..+++ +|..+. .+++.||+++|+|+|+.+.. .+...+++. +.|...+
T Consensus 240 ~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~ 312 (359)
T cd03808 240 EKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVP 312 (359)
T ss_pred HhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEEC
Confidence 11 12245566676543 558888988 775443 57999999999999986543 345666663 7787776
Q ss_pred CcccHHHHHHHHHHHhcc
Q 012678 400 RKFERREIETAIRRVTVE 417 (458)
Q Consensus 400 ~~~~~~~l~~~i~~ll~~ 417 (458)
. -+++++.++|.++++|
T Consensus 313 ~-~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 313 P-GDAEALADAIERLIED 329 (359)
T ss_pred C-CCHHHHHHHHHHHHhC
Confidence 5 5789999999999988
No 58
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.13 E-value=4.2e-08 Score=94.15 Aligned_cols=114 Identities=15% Similarity=0.097 Sum_probs=76.2
Q ss_pred CCcceeeccC-hh---hhhcCCCcccccccc----CchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcc
Q 012678 331 GRGHIVKWAP-QQ---EVLAHPAVGGFWTHN----GWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKF 402 (458)
Q Consensus 331 ~~~~~~~~ip-q~---~ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 402 (458)
.++.+.+|++ +. .++..+++ +|.-. ..+++.||+++|+|+|+... ......+.+. +.|..++. .
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~-~ 315 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP-G 315 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC-C
Confidence 4456779998 43 46888888 87753 35799999999999997654 3334455552 56776665 5
Q ss_pred cHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012678 403 ERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 458 (458)
Q Consensus 403 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (458)
+.+++.+++.+++++ +..++ ++++..++.....-+.++.++++++..+++
T Consensus 316 ~~~~~~~~l~~l~~~---~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 316 DPEDLAEGIEWLLAD---PDERE---ELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred CHHHHHHHHHHHHhC---HHHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 789999999999988 33222 222222222224456778888888887654
No 59
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.12 E-value=9.9e-08 Score=93.12 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=74.7
Q ss_pred CCcceeeccChh---hhhcCCCcccccc---ccC-chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCccc
Q 012678 331 GRGHIVKWAPQQ---EVLAHPAVGGFWT---HNG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFE 403 (458)
Q Consensus 331 ~~~~~~~~ipq~---~ll~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 403 (458)
+++.+.+++|+. +++..+++ +|. +.| ..++.||+++|+|+|+.... .....+++. +.|...+. -+
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-~d 354 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG-HD 354 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC-CC
Confidence 567888999864 47889998 763 233 35899999999999987543 345566663 67877765 57
Q ss_pred HHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 404 RREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 404 ~~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
.+++.++|.+++++.+ .+.+++++++..+ .-+-.+.++++++...
T Consensus 355 ~~~la~~i~~~l~~~~~~~~~~~~~~~~~~--------~fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 355 PADWADALARLLDDPRTRIRMGAAAVEHAA--------GFSWAATADGLLSSYR 400 (405)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHH
Confidence 8999999999998822 2334444443322 2355666666666554
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.11 E-value=1.9e-07 Score=89.26 Aligned_cols=162 Identities=17% Similarity=0.119 Sum_probs=97.8
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHhC---CCceEEEEcCCCCCCCcccCCCchhHHHh-----hcCCcceeeccChh
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLANS---RVPFLWVVRPGLVPGVEWLEPLPKGFLEM-----LDGRGHIVKWAPQQ 342 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~ipq~ 342 (458)
+..+++..|+... .+.+..++++++.. +..+.+.+.+... ..+.+.+. ..+++.+.+++++.
T Consensus 201 ~~~~i~~~g~~~~--~k~~~~li~~~~~~~~~~~~~~l~i~g~~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~ 270 (377)
T cd03798 201 DKKVILFVGRLVP--RKGIDYLIEALARLLKKRPDVHLVIVGDGP--------LREALEALAAELGLEDRVTFLGAVPHE 270 (377)
T ss_pred CceEEEEeccCcc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCCc--------chHHHHHHHHhcCCcceEEEeCCCCHH
Confidence 4566777787664 23344444444443 2234444433220 11112111 23566788999875
Q ss_pred ---hhhcCCCcccccc----ccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHh
Q 012678 343 ---EVLAHPAVGGFWT----HNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT 415 (458)
Q Consensus 343 ---~ll~~~~~~~~I~----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll 415 (458)
.++..+++ +|. -|..+++.||+++|+|+|+.+.. .....+.+. +.|...+. -+.+++.++|.+++
T Consensus 271 ~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~-~~~~~l~~~i~~~~ 342 (377)
T cd03798 271 EVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPP-GDPEALAEAILRLL 342 (377)
T ss_pred HHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECC-CCHHHHHHHHHHHh
Confidence 46788888 663 24567899999999999986543 455667763 66777665 68999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012678 416 VEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 458 (458)
Q Consensus 416 ~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (458)
++ ... +..++....+. +.-+....++++.+.++++
T Consensus 343 ~~---~~~-~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 343 AD---PWL-RLGRAARRRVA----ERFSWENVAERLLELYREV 377 (377)
T ss_pred cC---cHH-HHhHHHHHHHH----HHhhHHHHHHHHHHHHhhC
Confidence 98 442 22222222222 2334667778888877764
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.11 E-value=1.1e-07 Score=89.99 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=56.3
Q ss_pred CCcceeeccC-hhhhhcCCCccccccccC----chhHHHHHhhCCcccccccccchhhHHHHHHHHHh-cceecCCcccH
Q 012678 331 GRGHIVKWAP-QQEVLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWR-VGLHLERKFER 404 (458)
Q Consensus 331 ~~~~~~~~ip-q~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~ 404 (458)
.++.+.++.. -..++..+++ +|.-.. .+++.||+++|+|+|+.+..+.+ ..+... | .|...+. .+.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~-~~~ 306 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN-GDV 306 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC-CCH
Confidence 3445556633 3458888888 776542 47899999999999987654433 223332 4 7877775 578
Q ss_pred HHHHHHHHHHhcc
Q 012678 405 REIETAIRRVTVE 417 (458)
Q Consensus 405 ~~l~~~i~~ll~~ 417 (458)
+++.++|.++++|
T Consensus 307 ~~~~~~i~~ll~~ 319 (348)
T cd03820 307 EALAEALLRLMED 319 (348)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999998
No 62
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.10 E-value=3.3e-07 Score=95.63 Aligned_cols=398 Identities=14% Similarity=0.132 Sum_probs=201.1
Q ss_pred cCCCCEEEEEcCCCC---------------cCHHHHHHHHHHHHhCC--CEEEEEeCCCCCCC-------C---------
Q 012678 11 QKKGRRVILFPLPLQ---------------GHINPMLQLASILYSKG--FSITIIHTNFNSPN-------P--------- 57 (458)
Q Consensus 11 ~~~~~~il~~~~~~~---------------GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~-------~--------- 57 (458)
+.++|.|+++...+. |+..=.+.||++|+++| |+|.++|-....+. .
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~ 245 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSS 245 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccc
Confidence 356788888865432 46667799999999998 89999986432111 0
Q ss_pred -------CCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhcChhHHHH----HHHHhhCCCCCCCeeEEEecCch--h
Q 012678 58 -------SNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDC----LAKLISNGDQEEPVTCLITDAIW--H 124 (458)
Q Consensus 58 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~l~~~~~~~~~pDlvI~D~~~--~ 124 (458)
...+|+.++.+|.+....+.....++.++..+...+...+... .+++..... ..||+|-+.... .
T Consensus 246 ~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~--~~pDvIHaHyw~sG~ 323 (1050)
T TIGR02468 246 ENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHP--VWPYVIHGHYADAGD 323 (1050)
T ss_pred ccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccC--CCCCEEEECcchHHH
Confidence 1124777888886644334445555655555544443332221 122211111 249999877533 6
Q ss_pred hHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCccccCCCCCCCCCCCCCcccCCCchHHHHHHHHH
Q 012678 125 FAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVV 204 (458)
Q Consensus 125 ~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (458)
.+..+++.+|||+|.+..+.... .. ......+..+. ..+ .....+...+..-.
T Consensus 324 aa~~L~~~lgVP~V~T~HSLgr~----K~-~~ll~~g~~~~-----------------~~~-----~~~y~~~~Ri~~Ee 376 (1050)
T TIGR02468 324 SAALLSGALNVPMVLTGHSLGRD----KL-EQLLKQGRMSK-----------------EEI-----NSTYKIMRRIEAEE 376 (1050)
T ss_pred HHHHHHHhhCCCEEEECccchhh----hh-hhhcccccccc-----------------ccc-----ccccchHHHHHHHH
Confidence 67789999999988866652110 00 00000000000 000 00001112222222
Q ss_pred hhccCccEEEEcChhhhhHHHHHH--hhhc------------------CCCC--ccccCC----cccccccc-CC-----
Q 012678 205 SKTKACSGLIWNSFEDLEQTELTR--LHKD------------------FPIP--MFPIGP----FHKYCLAS-SS----- 252 (458)
Q Consensus 205 ~~~~~~~~~l~~s~~~le~~~~~~--~~~~------------------~~~p--v~~vGp----l~~~~~~~-~~----- 252 (458)
..+..++.++.+|..+.+..+-.+ +.+. +.+. |++-|- +.+..... +.
T Consensus 377 ~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~ 456 (1050)
T TIGR02468 377 LSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNE 456 (1050)
T ss_pred HHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccc
Confidence 345778888888887766432110 0000 0012 333331 11110000 00
Q ss_pred ----Ccc-cCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCC-----CceEEEEcCCCCCCCcc---cC
Q 012678 253 ----SLL-SQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSR-----VPFLWVVRPGLVPGVEW---LE 319 (458)
Q Consensus 253 ----~~~-~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~~---~~ 319 (458)
... +.+..+..|+.. ++++ ++++.|... +.+.+..+++|+.... ..+.+.++...... +. ..
T Consensus 457 ~~~~~~~~~~~~~l~r~~~~-pdkp-vIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d-~l~~~~~ 531 (1050)
T TIGR02468 457 EHPAKPDPPIWSEIMRFFTN-PRKP-MILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDID-EMSSGSS 531 (1050)
T ss_pred cccccccchhhHHHHhhccc-CCCc-EEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhh-hhhccch
Confidence 000 011123455543 3343 445567765 4555667777776542 23434444321100 00 00
Q ss_pred CCchhHH---Hh--hcCCcceeeccChhh---hhcCCC--ccccccc---cCc-hhHHHHHhhCCcccccccccchhhHH
Q 012678 320 PLPKGFL---EM--LDGRGHIVKWAPQQE---VLAHPA--VGGFWTH---NGW-NSTLESICEGVPMICQPCFGDQLVNA 385 (458)
Q Consensus 320 ~l~~~~~---~~--~~~~~~~~~~ipq~~---ll~~~~--~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na 385 (458)
..-..+. ++ +.+++.+.+++++.+ ++..++ .++||.- =|+ .++.||+++|+|+|.....+ ..
T Consensus 532 ~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~ 607 (1050)
T TIGR02468 532 SVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PV 607 (1050)
T ss_pred HHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cH
Confidence 0001111 11 235667778888755 555552 1227764 233 69999999999999986543 34
Q ss_pred HHHHHHHhcceecCCcccHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 386 RYVSHVWRVGLHLERKFERREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 386 ~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
..+++. ..|..++. -++++|+++|.++++|.+ ...+.+++++..+. -+-...++..++.+.
T Consensus 608 EII~~g-~nGlLVdP-~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~--------FSWe~ia~~yl~~i~ 669 (1050)
T TIGR02468 608 DIHRVL-DNGLLVDP-HDQQAIADALLKLVADKQLWAECRQNGLKNIHL--------FSWPEHCKTYLSRIA 669 (1050)
T ss_pred HHhccC-CcEEEECC-CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHH
Confidence 455552 56877775 689999999999999832 23344444433222 334555555555443
No 63
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.08 E-value=1.3e-07 Score=91.96 Aligned_cols=111 Identities=13% Similarity=0.080 Sum_probs=69.4
Q ss_pred CCcceeeccChhh---hhcCCCcccccc---ccCc-hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCccc
Q 012678 331 GRGHIVKWAPQQE---VLAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFE 403 (458)
Q Consensus 331 ~~~~~~~~ipq~~---ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 403 (458)
+++.+.+|+|+.+ ++..+++ +|. +-|. .++.||+++|+|+|+.+..+ ....+.+ |.+.... .+
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--~~ 319 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--PD 319 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC--CC
Confidence 5577889998644 7788888 664 2244 49999999999999877643 3344544 4343333 37
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 404 RREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 404 ~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
.+++.+++.+++++. .-+. .+....++...+.=+-...+++.++..++
T Consensus 320 ~~~l~~~l~~~l~~~---~~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 367 (398)
T cd03796 320 VESIVRKLEEAISIL---RTGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDR 367 (398)
T ss_pred HHHHHHHHHHHHhCh---hhhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 899999999999862 1110 11122222222455666777776666543
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.06 E-value=1.3e-07 Score=90.37 Aligned_cols=142 Identities=20% Similarity=0.166 Sum_probs=88.5
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHhCC-CceEEEEcCCCCCCCcccCCCchhHHH-----hhcCCcceeeccChhh-
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLANSR-VPFLWVVRPGLVPGVEWLEPLPKGFLE-----MLDGRGHIVKWAPQQE- 343 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~ipq~~- 343 (458)
+..+++..|+.. ..+.+..+++++++.. .++++...+. ..+.+.+ ....|+.+.+|+|+.+
T Consensus 190 ~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~----------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~ 257 (357)
T cd03795 190 GRPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP----------LEAELEALAAALGLLDRVRFLGRLDDEEK 257 (357)
T ss_pred CCcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh----------hHHHHHHHHHhcCCcceEEEcCCCCHHHH
Confidence 445677778865 3445667778887776 3433332221 1122211 2236778899999754
Q ss_pred --hhcCCCcccccc---ccCc-hhHHHHHhhCCcccccccccchhhHHHHHHH-HHhcceecCCcccHHHHHHHHHHHhc
Q 012678 344 --VLAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSH-VWRVGLHLERKFERREIETAIRRVTV 416 (458)
Q Consensus 344 --ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~-~~G~G~~l~~~~~~~~l~~~i~~ll~ 416 (458)
++..+++-++.+ +.|. .++.||+++|+|+|+....+.. ..+.+ . +.|...+. -+.+++.++|.++++
T Consensus 258 ~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~~-~d~~~~~~~i~~l~~ 331 (357)
T cd03795 258 AALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVPP-GDPAALAEAIRRLLE 331 (357)
T ss_pred HHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCC-CceEEeCC-CCHHHHHHHHHHHHH
Confidence 777888833323 2343 4799999999999987655443 33332 3 67777664 589999999999999
Q ss_pred cch-hHHHHHHHHHH
Q 012678 417 EAE-GQEMRERIMHL 430 (458)
Q Consensus 417 ~~~-~~~~~~~a~~~ 430 (458)
|.+ ...+++++++.
T Consensus 332 ~~~~~~~~~~~~~~~ 346 (357)
T cd03795 332 DPELRERLGEAARER 346 (357)
T ss_pred CHHHHHHHHHHHHHH
Confidence 832 23444444433
No 65
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.04 E-value=8.3e-08 Score=94.18 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=54.9
Q ss_pred hhhhcCCCccccccc-----cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhc
Q 012678 342 QEVLAHPAVGGFWTH-----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTV 416 (458)
Q Consensus 342 ~~ll~~~~~~~~I~H-----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~ 416 (458)
..++..+++ ++.. ||..++.||+++|+|+|+-|..+++.+....+.+. |+++.. -++++|.++|.++++
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~---~d~~~La~~l~~ll~ 387 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV---EDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE---CCHHHHHHHHHHHhc
Confidence 447788887 5442 34446999999999999999988888888877764 766653 368999999999999
Q ss_pred c
Q 012678 417 E 417 (458)
Q Consensus 417 ~ 417 (458)
|
T Consensus 388 ~ 388 (425)
T PRK05749 388 D 388 (425)
T ss_pred C
Confidence 8
No 66
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.04 E-value=3.2e-07 Score=87.87 Aligned_cols=108 Identities=22% Similarity=0.243 Sum_probs=72.1
Q ss_pred CCccee-eccChh---hhhcCCCccccccc------cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC
Q 012678 331 GRGHIV-KWAPQQ---EVLAHPAVGGFWTH------NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER 400 (458)
Q Consensus 331 ~~~~~~-~~ipq~---~ll~~~~~~~~I~H------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 400 (458)
+++.+. .|+|+. .++..+++ +|.- |..+++.||+++|+|+|+.+..+ ...+.+. +.|.....
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~ 318 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPP 318 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcC
Confidence 555666 458864 47888888 6632 33468999999999999987654 3445553 77777765
Q ss_pred cccHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 401 KFERREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 401 ~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
-+.+++.++|.+++++.+ ..++++++++..++ -+..+.++++.+.+
T Consensus 319 -~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--------~s~~~~~~~~~~~~ 365 (366)
T cd03822 319 -GDPAALAEAIRRLLADPELAQALRARAREYARA--------MSWERVAERYLRLL 365 (366)
T ss_pred -CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh--------CCHHHHHHHHHHHh
Confidence 468999999999999832 33444444444332 45666666666654
No 67
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.03 E-value=2.8e-07 Score=89.48 Aligned_cols=91 Identities=13% Similarity=0.101 Sum_probs=63.6
Q ss_pred cCCcceeeccChh---hhhcCCCcccccccc---C-chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcc
Q 012678 330 DGRGHIVKWAPQQ---EVLAHPAVGGFWTHN---G-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKF 402 (458)
Q Consensus 330 ~~~~~~~~~ipq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 402 (458)
.+++.+.+++|+. .++..+++ ++... | ..++.||+++|+|+|+.-.. .....+.+. +.|...+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeCC--
Confidence 3577888999975 47888888 66422 2 35789999999999987443 344556663 66776653
Q ss_pred cHHHHHHHHHHHhccch-hHHHHHHHHH
Q 012678 403 ERREIETAIRRVTVEAE-GQEMRERIMH 429 (458)
Q Consensus 403 ~~~~l~~~i~~ll~~~~-~~~~~~~a~~ 429 (458)
+++++.++|.+++++.+ ...+.+++++
T Consensus 350 ~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 350 TPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 78999999999999832 2344444443
No 68
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.00 E-value=8.5e-08 Score=89.64 Aligned_cols=159 Identities=13% Similarity=0.035 Sum_probs=97.3
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHhCCCc-eEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeecc-ChhhhhcCC
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLANSRVP-FLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWA-PQQEVLAHP 348 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i-pq~~ll~~~ 348 (458)
+++|.+-.||...--...+-.++++.+....+ ..+.+.... . . +.+.+..... ....++ .-.+++..+
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~-------~-~-~~i~~~~~~~-~~~~~~~~~~~~m~~a 236 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF-------K-G-KDLKEIYGDI-SEFEISYDTHKALLEA 236 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC-------c-H-HHHHHHHhcC-CCcEEeccHHHHHHhh
Confidence 47899999998762223444444555544221 223332211 0 1 2222211110 111222 335689999
Q ss_pred CccccccccCchhHHHHHhhCCcccccc-cccchhhHHHHHH---HHHhcceec-------------C-CcccHHHHHHH
Q 012678 349 AVGGFWTHNGWNSTLESICEGVPMICQP-CFGDQLVNARYVS---HVWRVGLHL-------------E-RKFERREIETA 410 (458)
Q Consensus 349 ~~~~~I~HgG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~v~---~~~G~G~~l-------------~-~~~~~~~l~~~ 410 (458)
++ +|+-+|..|+ |+...|+|||+.= ...-|+.||+++. . .|+.-.+ - .+.|++.|.+.
T Consensus 237 Dl--al~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~ 312 (347)
T PRK14089 237 EF--AFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKA 312 (347)
T ss_pred hH--HHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHH
Confidence 99 9999999999 9999999999822 2357999999998 5 3665434 1 26899999999
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 012678 411 IRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLV 452 (458)
Q Consensus 411 i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 452 (458)
+.+ ... +.+++...++++.+. ++++.++++.+.
T Consensus 313 i~~-~~~---~~~~~~~~~l~~~l~-----~~a~~~~A~~i~ 345 (347)
T PRK14089 313 YKE-MDR---EKFFKKSKELREYLK-----HGSAKNVAKILK 345 (347)
T ss_pred HHH-HHH---HHHHHHHHHHHHHhc-----CCHHHHHHHHHh
Confidence 988 222 567777777776664 356666655544
No 69
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.00 E-value=4.2e-07 Score=89.45 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=73.4
Q ss_pred cCCcceeeccChhh---hhcCC----Ccccccccc---C-chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceec
Q 012678 330 DGRGHIVKWAPQQE---VLAHP----AVGGFWTHN---G-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHL 398 (458)
Q Consensus 330 ~~~~~~~~~ipq~~---ll~~~----~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l 398 (458)
.+++.+.+++++.+ ++..+ ++ ||... | -.++.||+++|+|+|+... ..+...+.+. ..|...
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEe
Confidence 45667778878655 46544 55 87654 3 3599999999999998854 3355666653 568777
Q ss_pred CCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 399 ERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 399 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
+. -+++++.++|.++++| +..+ +++++..++...+.=+-...++++.+.+
T Consensus 389 ~~-~d~~~la~~i~~ll~~---~~~~---~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 389 DV-LDLEAIASALEDALSD---SSQW---QLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CC-CCHHHHHHHHHHHHhC---HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 65 5789999999999998 4332 2333333322223445666666666654
No 70
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.98 E-value=1.1e-06 Score=84.26 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=57.1
Q ss_pred cCCcceeeccChhh---hhcCCCcccccccc---C-chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcc
Q 012678 330 DGRGHIVKWAPQQE---VLAHPAVGGFWTHN---G-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKF 402 (458)
Q Consensus 330 ~~~~~~~~~ipq~~---ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 402 (458)
.+++.+.+|+++.+ ++..+++ +|.-. | .+++.||+++|+|+|+.+.. .....+.+ +.|.....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC--
Confidence 35667889999644 6788888 66432 2 47899999999999997543 34444443 66766654
Q ss_pred cHHHHHHHHHHHhcc
Q 012678 403 ERREIETAIRRVTVE 417 (458)
Q Consensus 403 ~~~~l~~~i~~ll~~ 417 (458)
+.+++.++|.+++++
T Consensus 331 ~~~~~~~~i~~l~~~ 345 (375)
T cd03821 331 DVDALAAALRRALEL 345 (375)
T ss_pred ChHHHHHHHHHHHhC
Confidence 559999999999998
No 71
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.98 E-value=1.1e-08 Score=98.27 Aligned_cols=134 Identities=16% Similarity=0.090 Sum_probs=85.2
Q ss_pred CCcEEEEEcCccccC-CHHHHHHHHHHHHhCCC-ceEEEEcCCCCCCCcccCCCchhHHHhh--cCCcceeeccChh---
Q 012678 270 AKSVMYVSFGSIVVV-NVTEFLEIAWGLANSRV-PFLWVVRPGLVPGVEWLEPLPKGFLEML--DGRGHIVKWAPQQ--- 342 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~ipq~--- 342 (458)
+++.+++++|..... ..+.+..++++++.... ++.+.+.+..... ..+-+...+.. .+++.+.++.++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~----~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTR----PRIREAGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChH----HHHHHHHHhhccCCCCEEEECCcCHHHHH
Confidence 466788888876642 45667888888887533 2444443322100 11111111111 3456666665543
Q ss_pred hhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 343 EVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 343 ~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
.++..+++ +|+.+| |.+.||++.|+|+|.++.. |. +..+.+. |++..+.. +.+++.++|.+++++
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~--~~~~i~~~i~~ll~~ 337 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT--DPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC--CHHHHHHHHHHHhcC
Confidence 46778898 999999 8888999999999998643 22 3334443 77665542 689999999999998
No 72
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.97 E-value=5.4e-07 Score=86.12 Aligned_cols=149 Identities=15% Similarity=0.094 Sum_probs=85.0
Q ss_pred CCcEEEEEcCcccc-CCHHHHHHHHHHHHhC--CCceEEEEcCCCCCCCcccCCCchhHH---H--hhcCCcceeeccCh
Q 012678 270 AKSVMYVSFGSIVV-VNVTEFLEIAWGLANS--RVPFLWVVRPGLVPGVEWLEPLPKGFL---E--MLDGRGHIVKWAPQ 341 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~---~--~~~~~~~~~~~ipq 341 (458)
++..+++..|.... .....+..++..+... +.+++++-.+.. ...+.+.+. + ...+++.+.+|.+.
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~------~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 256 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQG------RRFYYAELLELIKRLGLQDRVTFVGHCSD 256 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcc------cchHHHHHHHHHHHcCCcceEEEcCCccc
Confidence 34566777787654 2344444445555443 334333332221 011111111 1 22356677788553
Q ss_pred -hhhhcCCCccccccc----cC-chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHh
Q 012678 342 -QEVLAHPAVGGFWTH----NG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT 415 (458)
Q Consensus 342 -~~ll~~~~~~~~I~H----gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll 415 (458)
..++..+++ +|+- -| .+++.||+++|+|+|+.-. ......+.+. +.|..++. -+.+++.++|..++
T Consensus 257 ~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~-~~~~~l~~~i~~~~ 328 (355)
T cd03819 257 MPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP-GDAEALAQALDQIL 328 (355)
T ss_pred HHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC-CCHHHHHHHHHHHH
Confidence 558888998 5532 23 3699999999999998643 3445666663 57887765 68999999997665
Q ss_pred c-cch-hHHHHHHHHHHHH
Q 012678 416 V-EAE-GQEMRERIMHLKE 432 (458)
Q Consensus 416 ~-~~~-~~~~~~~a~~~~~ 432 (458)
. +.+ ...+++++++..+
T Consensus 329 ~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 329 SLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred hhCHHHHHHHHHHHHHHHH
Confidence 4 421 3444555544443
No 73
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.96 E-value=4e-07 Score=87.54 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=62.3
Q ss_pred cCCcceeeccChhh---hhcCCCccccccc----------cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcce
Q 012678 330 DGRGHIVKWAPQQE---VLAHPAVGGFWTH----------NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGL 396 (458)
Q Consensus 330 ~~~~~~~~~ipq~~---ll~~~~~~~~I~H----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 396 (458)
.+++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 45667889998654 6888888 6642 2357999999999999987654 366777774 7888
Q ss_pred ecCCcccHHHHHHHHHHHhcc
Q 012678 397 HLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 397 ~l~~~~~~~~l~~~i~~ll~~ 417 (458)
.++. -+.+++.++|.++++|
T Consensus 317 ~~~~-~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 317 LVPE-GDVAALAAALGRLLAD 336 (367)
T ss_pred EECC-CCHHHHHHHHHHHHcC
Confidence 7775 5789999999999998
No 74
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.95 E-value=8.4e-08 Score=88.90 Aligned_cols=301 Identities=14% Similarity=0.086 Sum_probs=154.2
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCC-CCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhc
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS-PNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKC 93 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (458)
|||.+--.-. -|+.-+-.+.++|.++||+|.+.+-+... ...-+.-|+.+..+..-- ......+.....+
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g-------~~~~~Kl~~~~~R- 71 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHG-------DSLYGKLLESIER- 71 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCC-------CCHHHHHHHHHHH-
Confidence 6666655444 59999999999999999999998875322 111112467777665311 1111111111111
Q ss_pred ChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCccc
Q 012678 94 VVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLEKP 173 (458)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 173 (458)
...+++.+.+ ++||++|+- .+..+..+|..+|+|+|.+.-........... .|..+ ...
T Consensus 72 ---~~~l~~~~~~-----~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt---------~Pla~---~i~ 130 (335)
T PF04007_consen 72 ---QYKLLKLIKK-----FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLT---------LPLAD---VII 130 (335)
T ss_pred ---HHHHHHHHHh-----hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceee---------hhcCC---eeE
Confidence 1123333333 689999975 46778889999999999987763321110000 01000 000
Q ss_pred cCCCCCCCCCCCCCcccCCCchHHHHHHHHHhhccCccEEE-EcChhhhhHHHHHHhhhcCCCCccccCCccccccccCC
Q 012678 174 VTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLI-WNSFEDLEQTELTRLHKDFPIPMFPIGPFHKYCLASSS 252 (458)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~s~~~le~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~ 252 (458)
.|.. ......+.++ .+ ..+. .+.+.+ +.++-|+.
T Consensus 131 ~P~~--------------~~~~~~~~~G------~~-~~i~~y~G~~E----------------~ayl~~F~-------- 165 (335)
T PF04007_consen 131 TPEA--------------IPKEFLKRFG------AK-NQIRTYNGYKE----------------LAYLHPFK-------- 165 (335)
T ss_pred CCcc--------------cCHHHHHhcC------Cc-CCEEEECCeee----------------EEeecCCC--------
Confidence 0000 0000000000 00 0111 222222 22222211
Q ss_pred CcccCccccchhhccCCCCcEEEEEcCcccc----CCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHh
Q 012678 253 SLLSQDQSCISWLDKQAAKSVMYVSFGSIVV----VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEM 328 (458)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 328 (458)
.+.+..+-+.. .+++.|++=+-+..+ .....+..+++.|++.+..+|..-.... ...+.+.+
T Consensus 166 ----Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~------~~~~~~~~--- 231 (335)
T PF04007_consen 166 ----PDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED------QRELFEKY--- 231 (335)
T ss_pred ----CChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc------hhhHHhcc---
Confidence 11112222332 245677777666444 2234466788889888766433332221 11111111
Q ss_pred hcCCccee-eccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHH
Q 012678 329 LDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREI 407 (458)
Q Consensus 329 ~~~~~~~~-~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 407 (458)
++.+. +-+.-.++|.++++ +|+-|| ....||...|+|.|.+ +.++-...-+.+.+. |+ ... ..+++++
T Consensus 232 ---~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~~-~~~~~ei 300 (335)
T PF04007_consen 232 ---GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LYH-STDPDEI 300 (335)
T ss_pred ---CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eEe-cCCHHHH
Confidence 11222 44555689999999 998666 7889999999999985 223322333556663 54 333 2577777
Q ss_pred HHHHHHHh
Q 012678 408 ETAIRRVT 415 (458)
Q Consensus 408 ~~~i~~ll 415 (458)
.+.+.+.+
T Consensus 301 ~~~v~~~~ 308 (335)
T PF04007_consen 301 VEYVRKNL 308 (335)
T ss_pred HHHHHHhh
Confidence 77555544
No 75
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.91 E-value=5.2e-07 Score=85.46 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=91.7
Q ss_pred EEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHh--hcCCcceeeccChhh---hhcCC
Q 012678 274 MYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEM--LDGRGHIVKWAPQQE---VLAHP 348 (458)
Q Consensus 274 i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~ipq~~---ll~~~ 348 (458)
+++..|... +.+....+++++++.+.++++.-.+.. ...+-...... ..+++.+.+++++.+ +++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~------~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD------PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC------HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 445567764 444556677888887777665443321 01011111111 246778889999754 67888
Q ss_pred Ccccccc----ccCc-hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccchhHHH
Q 012678 349 AVGGFWT----HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQEM 423 (458)
Q Consensus 349 ~~~~~I~----HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~ 423 (458)
++ +|. +-|. .++.||+++|+|+|+.... .+...+.+. ..|...+. .+++.++|.++++. .
T Consensus 245 d~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~~---~~~l~~~l~~l~~~---~-- 309 (335)
T cd03802 245 RA--LLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVDS---VEELAAAVARADRL---D-- 309 (335)
T ss_pred cE--EEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeCC---HHHHHHHHHHHhcc---H--
Confidence 88 553 2343 5899999999999987543 344555552 36776653 89999999999765 2
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 424 RERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
++++++.. . +.-+....+++.++..
T Consensus 310 ~~~~~~~~---~----~~~s~~~~~~~~~~~y 334 (335)
T cd03802 310 RAACRRRA---E----RRFSAARMVDDYLALY 334 (335)
T ss_pred HHHHHHHH---H----HhCCHHHHHHHHHHHh
Confidence 22333221 1 3445666666666543
No 76
>PLN02275 transferase, transferring glycosyl groups
Probab=98.90 E-value=1.3e-06 Score=84.10 Aligned_cols=320 Identities=13% Similarity=0.073 Sum_probs=160.6
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCC-EEEEEeCCCCCCC--CCCCCCceEEecCCCCCCCccCcccHHHHHHHH
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGF-SITIIHTNFNSPN--PSNYPHFSFNSISESLWESEVSTENAISLLTVL 89 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (458)
.+.|+.++..+-.|.-..+..++..|+++|| +|++++....... ..+..++.++.++. +............+..+
T Consensus 3 ~~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~--~~~~~~~~~~~~~~~~~ 80 (371)
T PLN02275 3 RRGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ--PRLLQRLPRVLYALALL 80 (371)
T ss_pred CccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCC--cccccccccchHHHHHH
Confidence 4557777777888999999999999999986 7999987533221 12235688887764 11111111122211111
Q ss_pred HHhcChhHHHHHHHH-hhCCCCCCCeeEEEecC-ch----hhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCC
Q 012678 90 NDKCVVPFQDCLAKL-ISNGDQEEPVTCLITDA-IW----HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYL 163 (458)
Q Consensus 90 ~~~~~~~l~~~l~~l-~~~~~~~~~pDlvI~D~-~~----~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (458)
.... ..+...+..+ .+. .+||+|++.. .. ..+..++...++|+|........ ... ..+.
T Consensus 81 ~~~~-~~~~~~~~~~~~~~----~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~--~~~-------~~~~- 145 (371)
T PLN02275 81 LKVA-IQFLMLLWFLCVKI----PRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGY--TLL-------ALSL- 145 (371)
T ss_pred HHHH-HHHHHHHHHHHhhC----CCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccH--HHH-------hccc-
Confidence 1100 1111122221 122 6899998753 22 23345667789999876444210 000 0000
Q ss_pred CccCCCCccccCCCCCCCCCCCCCcccCCCchHHHHHHHHHhh-ccCccEEEEcChhhhhHHHHHHhhhcCCCC--cccc
Q 012678 164 AEQDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSK-TKACSGLIWNSFEDLEQTELTRLHKDFPIP--MFPI 240 (458)
Q Consensus 164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~p--v~~v 240 (458)
.......+........ .+.++.++..|...-+.- ...++.+ +++-
T Consensus 146 ---------------------------~~~~~~~~~~~~~e~~~~~~ad~ii~~S~~~~~~l-----~~~~g~~i~vi~n 193 (371)
T PLN02275 146 ---------------------------GRSHPLVRLYRWYERHYGKMADGHLCVTKAMQHEL-----DQNWGIRATVLYD 193 (371)
T ss_pred ---------------------------CCCCHHHHHHHHHHHHHHhhCCEEEECCHHHHHHH-----HHhcCCCeEEECC
Confidence 0011112222222222 355778888776543321 1111222 2222
Q ss_pred CCccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhC---------------------
Q 012678 241 GPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANS--------------------- 299 (458)
Q Consensus 241 Gpl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~--------------------- 299 (458)
|. ..... +.+.. .. +. .+++.++++.|.... .+.+..+++|+...
T Consensus 194 ~~-~~~f~-----~~~~~---~~-~~--~~~~~~i~~~grl~~--~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~ 259 (371)
T PLN02275 194 QP-PEFFR-----PASLE---IR-LR--PNRPALVVSSTSWTP--DEDFGILLEAAVMYDRRVAARLNESDSASGKQSLY 259 (371)
T ss_pred CC-HHHcC-----cCCch---hc-cc--CCCcEEEEEeCceec--cCCHHHHHHHHHHHHhhhhhccccccccccccccC
Confidence 21 10000 00000 01 11 123445555566553 23334444443321
Q ss_pred -CCceEEEEcCCCCCCCcccCCCchhHHHhhc----CCccee-eccChhh---hhcCCCcccccc-c-----cC-chhHH
Q 012678 300 -RVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD----GRGHIV-KWAPQQE---VLAHPAVGGFWT-H-----NG-WNSTL 363 (458)
Q Consensus 300 -~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~-~~ipq~~---ll~~~~~~~~I~-H-----gG-~~s~~ 363 (458)
+.++++ ++.+. .-+.+.+... +|+.+. .|+|+.+ +|..+++ +|. + -| -+++.
T Consensus 260 ~~i~l~i-vG~G~---------~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~ll 327 (371)
T PLN02275 260 PRLLFII-TGKGP---------QKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVV 327 (371)
T ss_pred CCeEEEE-EeCCC---------CHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHH
Confidence 223333 33222 1122322211 344554 4788765 5888998 773 1 12 35899
Q ss_pred HHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHh
Q 012678 364 ESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT 415 (458)
Q Consensus 364 eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll 415 (458)
||+++|+|+|.... ..+...+++. +.|...+ +++++.++|.+++
T Consensus 328 EAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~---~~~~la~~i~~l~ 371 (371)
T PLN02275 328 DMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS---SSSELADQLLELL 371 (371)
T ss_pred HHHHCCCCEEEecC----CChHHHccCC-CCeEEEC---CHHHHHHHHHHhC
Confidence 99999999998753 3366777774 7888775 5889999998875
No 77
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.85 E-value=8.2e-08 Score=92.21 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=84.1
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHhC-----CCceEEEEcCCCCCCCcccCCCchhHHHhh--cCCcceeeccChh-
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLANS-----RVPFLWVVRPGLVPGVEWLEPLPKGFLEML--DGRGHIVKWAPQQ- 342 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~ipq~- 342 (458)
+++++++.+-... ..+.+..+++|+++. +.++++...++.. .-+.+.+.. .+++++.+.+++.
T Consensus 197 ~~~vl~~~hr~~~-~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRREN-VGEPLENIFKAIREIVEEFEDVQIVYPVHLNPV--------VREPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhh-hhhHHHHHHHHHHHHHHHCCCCEEEEECCCChH--------HHHHHHHHhCCCCCEEEECCCChHH
Confidence 4567666543221 124466777777653 3455554433210 111122222 2466777766653
Q ss_pred --hhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccchh
Q 012678 343 --EVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEG 420 (458)
Q Consensus 343 --~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~ 420 (458)
.++..+++ +|+..|. .+.||+++|+|+|.++-.++++. +... |.|..+. .++++|.+++.+++++
T Consensus 268 ~~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~--~d~~~i~~ai~~ll~~--- 334 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG--TDKENITKAAKRLLTD--- 334 (365)
T ss_pred HHHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC--CCHHHHHHHHHHHHhC---
Confidence 46788888 9998764 47999999999999876555542 2333 7666553 4889999999999988
Q ss_pred HHHHHHHH
Q 012678 421 QEMRERIM 428 (458)
Q Consensus 421 ~~~~~~a~ 428 (458)
+..+++..
T Consensus 335 ~~~~~~~~ 342 (365)
T TIGR00236 335 PDEYKKMS 342 (365)
T ss_pred hHHHHHhh
Confidence 66555443
No 78
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.84 E-value=1.8e-06 Score=82.38 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=60.0
Q ss_pred cCCcceeeccChhh---hhcCCCccccccc----------cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcce
Q 012678 330 DGRGHIVKWAPQQE---VLAHPAVGGFWTH----------NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGL 396 (458)
Q Consensus 330 ~~~~~~~~~ipq~~---ll~~~~~~~~I~H----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 396 (458)
.+++.+.+++|+.+ ++..+++ +|.- |.-+++.||+++|+|+|+.+..+ ....+++. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceE
Confidence 35678889998644 7778888 6652 33479999999999999876432 33455552 4787
Q ss_pred ecCCcccHHHHHHHHHHHhccc
Q 012678 397 HLERKFERREIETAIRRVTVEA 418 (458)
Q Consensus 397 ~l~~~~~~~~l~~~i~~ll~~~ 418 (458)
..+. -+.+++.++|.+++++.
T Consensus 308 ~~~~-~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 308 LVPP-GDPEALADAIERLLDDP 328 (355)
T ss_pred EeCC-CCHHHHHHHHHHHHhCH
Confidence 7765 48999999999999883
No 79
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.82 E-value=2e-06 Score=81.43 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=78.3
Q ss_pred CCcEEEEEcCccccCCHHHHHHHHHHHHhC-----CCceEEEEcCCCCCCCcccCCCchhHHHh--hcCCcceeeccCh-
Q 012678 270 AKSVMYVSFGSIVVVNVTEFLEIAWGLANS-----RVPFLWVVRPGLVPGVEWLEPLPKGFLEM--LDGRGHIVKWAPQ- 341 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~ipq- 341 (458)
+++.+++..|+... .+....++++++.. +.++++. +.... ...+ ....+. ..+++.+.++.+.
T Consensus 187 ~~~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~~-----~~~~-~~~~~~~~~~~~v~~~g~~~~~ 257 (353)
T cd03811 187 PDGPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVIL-GDGPL-----REEL-EALAKELGLADRVHFLGFQSNP 257 (353)
T ss_pred CCceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEE-cCCcc-----HHHH-HHHHHhcCCCccEEEecccCCH
Confidence 45577777888663 33344555555543 2333333 32210 0001 111111 2345667788775
Q ss_pred hhhhcCCCccccccc----cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHH---HHHHHHH
Q 012678 342 QEVLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREI---ETAIRRV 414 (458)
Q Consensus 342 ~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l---~~~i~~l 414 (458)
..++..+++ +|.- |..+++.||+++|+|+|+.... .....+++. +.|...+. -+.+.+ .+.+.++
T Consensus 258 ~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-~~~~~~~~~~~~i~~~ 329 (353)
T cd03811 258 YPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV-GDEAALAAAALALLDL 329 (353)
T ss_pred HHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC-CCHHHHHHHHHHHHhc
Confidence 458889988 6642 3357899999999999986433 566777774 78888775 566676 5666666
Q ss_pred hcc
Q 012678 415 TVE 417 (458)
Q Consensus 415 l~~ 417 (458)
.++
T Consensus 330 ~~~ 332 (353)
T cd03811 330 LLD 332 (353)
T ss_pred cCC
Confidence 766
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.81 E-value=1.7e-06 Score=82.69 Aligned_cols=158 Identities=11% Similarity=0.110 Sum_probs=92.4
Q ss_pred CCcEEEEEcCccccCCHHHHHHHHHHHHhC-----CCceEEEEcCCCCCCCcccCCCchhHHH-----hhcCCcceeecc
Q 012678 270 AKSVMYVSFGSIVVVNVTEFLEIAWGLANS-----RVPFLWVVRPGLVPGVEWLEPLPKGFLE-----MLDGRGHIVKWA 339 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~i 339 (458)
++..+++..|+... .+.+..++++++.. +.++++.-.+. ..+.+.+ ...+|+.+.++.
T Consensus 186 ~~~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G~g~----------~~~~~~~~~~~~~~~~~v~~~g~~ 253 (360)
T cd04951 186 NDTFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAGDGP----------LRATLERLIKALGLSNRVKLLGLR 253 (360)
T ss_pred CCCEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEcCCC----------cHHHHHHHHHhcCCCCcEEEeccc
Confidence 34567777787653 34444555555432 34555543221 1122221 123466777776
Q ss_pred Ch-hhhhcCCCccccccccC----chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHH
Q 012678 340 PQ-QEVLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRV 414 (458)
Q Consensus 340 pq-~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~l 414 (458)
.+ ..++..+++ +|.-.. .+++.||+++|+|+|+. |...+...+++. |... .. -+.+++.++|.++
T Consensus 254 ~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~~~--~~-~~~~~~~~~i~~l 323 (360)
T cd04951 254 DDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GLIV--PI-SDPEALANKIDEI 323 (360)
T ss_pred ccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ceEe--CC-CCHHHHHHHHHHH
Confidence 64 568888888 665432 57899999999999874 455566666652 4443 43 5788999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 415 TVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 415 l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
++++ +.+++.....+..+. +.-+....++++.+..
T Consensus 324 l~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y 358 (360)
T cd04951 324 LKMS--GEERDIIGARRERIV----KKFSINSIVQQWLTLY 358 (360)
T ss_pred HhCC--HHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHh
Confidence 8432 444444333333333 3445666666666554
No 81
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.81 E-value=2.6e-06 Score=81.62 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=85.7
Q ss_pred EEEcCccccCCHHHHHHHHHHHHhCC--CceEEEEcCCCCCCCcccCCCchhHH--HhhcCCcceeeccChhh---hhcC
Q 012678 275 YVSFGSIVVVNVTEFLEIAWGLANSR--VPFLWVVRPGLVPGVEWLEPLPKGFL--EMLDGRGHIVKWAPQQE---VLAH 347 (458)
Q Consensus 275 ~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~ipq~~---ll~~ 347 (458)
++..|+.. +.+.+..++++++... .++++ ++.... ...+-+.+. ....+++.+.+++|+.+ ++..
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~i-vG~~~~-----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLVI-VGNADH-----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEEE-EcCCCC-----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 44567765 3445666777777664 34333 333211 111112222 12336778889999864 5666
Q ss_pred CCccccccccCc-----hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccchhHH
Q 012678 348 PAVGGFWTHNGW-----NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQE 422 (458)
Q Consensus 348 ~~~~~~I~HgG~-----~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~ 422 (458)
+++ ++.++-. +++.||+++|+|+|+....+ +...+++ .|...+. . +.+.++|.+++++ +.
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~--~-~~l~~~i~~l~~~---~~ 332 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKV--G-DDLASLLEELEAD---PE 332 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecC--c-hHHHHHHHHHHhC---HH
Confidence 776 6554432 58999999999999876542 2222332 2333332 1 1299999999998 32
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 423 MRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
.++ ++++..++.....-+-...++++++.+
T Consensus 333 ~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 333 EVS---AMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HHH---HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 222 223333322223445666777776654
No 82
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.81 E-value=7.9e-07 Score=85.21 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=86.4
Q ss_pred cEEEEEcCccccCCHHHHHHHHHHHHhCCCce-EEEEcCCCCCCCcccCCCchhHHH-hhcCCcceeeccCh--h---hh
Q 012678 272 SVMYVSFGSIVVVNVTEFLEIAWGLANSRVPF-LWVVRPGLVPGVEWLEPLPKGFLE-MLDGRGHIVKWAPQ--Q---EV 344 (458)
Q Consensus 272 ~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ipq--~---~l 344 (458)
+.+++..|.......+.+..+++++......+ ++.++.+.. ...+-+...+ ..++++.+.+|+++ . +.
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~-----~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSD-----FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCcc-----HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 45566777765333445667777777653232 223332210 1111111111 23457788888754 2 24
Q ss_pred hcCCCccccccc----cCchhHHHHHhhCCcccccc-cccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccch
Q 012678 345 LAHPAVGGFWTH----NGWNSTLESICEGVPMICQP-CFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAE 419 (458)
Q Consensus 345 l~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~ 419 (458)
+..+++ +|.. |--.++.||+++|+|+|+.- ..+ ....+++. ..|..++. -+.+++.++|.++++|.+
T Consensus 255 ~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~-~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 255 IKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP-GNIDEFVGKLNKVISGEV 326 (359)
T ss_pred HhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC-CCHHHHHHHHHHHHhCcc
Confidence 455677 6643 22579999999999999875 322 33456653 56877765 689999999999999843
Q ss_pred ---hHHHHHHHHHHHH
Q 012678 420 ---GQEMRERIMHLKE 432 (458)
Q Consensus 420 ---~~~~~~~a~~~~~ 432 (458)
...++++++++..
T Consensus 327 ~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 327 KYQHDAIPNSIERFYE 342 (359)
T ss_pred cCCHHHHHHHHHHhhH
Confidence 2334444444443
No 83
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.79 E-value=6.7e-06 Score=79.95 Aligned_cols=166 Identities=11% Similarity=0.122 Sum_probs=99.3
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHhC---CCceEEE-EcCCCCCCCcccCCCchhHHH-hhcCCcceeeccChhh--
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLANS---RVPFLWV-VRPGLVPGVEWLEPLPKGFLE-MLDGRGHIVKWAPQQE-- 343 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~-~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ipq~~-- 343 (458)
+++.+++.|.... .+.+..+++|++.. +..+-+. ++.+.. ...+...+.+ .+.+++.+.+|+|+.+
T Consensus 221 ~~~~il~vGrl~~--~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~-----~~~l~~~~~~~~l~~~V~~~G~~~~~el~ 293 (406)
T PRK15427 221 TPLEIISVARLTE--KKGLHVAIEACRQLKEQGVAFRYRILGIGPW-----ERRLRTLIEQYQLEDVVEMPGFKPSHEVK 293 (406)
T ss_pred CCeEEEEEeCcch--hcCHHHHHHHHHHHHhhCCCEEEEEEECchh-----HHHHHHHHHHcCCCCeEEEeCCCCHHHHH
Confidence 4455666777663 34455555555432 3333232 332210 1111111111 1235678889999755
Q ss_pred -hhcCCCccccccc---------cCc-hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHH
Q 012678 344 -VLAHPAVGGFWTH---------NGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIR 412 (458)
Q Consensus 344 -ll~~~~~~~~I~H---------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~ 412 (458)
++..+++ +|.- -|. ++++||+++|+|+|+.... .....+++. ..|...+. -+++++.++|.
T Consensus 294 ~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~lv~~-~d~~~la~ai~ 365 (406)
T PRK15427 294 AMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGWLVPE-NDAQALAQRLA 365 (406)
T ss_pred HHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceEEeCC-CCHHHHHHHHH
Confidence 7788888 7642 244 6789999999999987543 345666663 57877765 58999999999
Q ss_pred HHhc-cch-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012678 413 RVTV-EAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 458 (458)
Q Consensus 413 ~ll~-~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (458)
++++ |.+ ...+.+++++ .....=+....++++.+.++++
T Consensus 366 ~l~~~d~~~~~~~~~~ar~-------~v~~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 366 AFSQLDTDELAPVVKRARE-------KVETDFNQQVINRELASLLQAL 406 (406)
T ss_pred HHHhCCHHHHHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHhhC
Confidence 9998 721 2223333332 2224456788888888877654
No 84
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.78 E-value=2e-06 Score=83.40 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=73.2
Q ss_pred EEEEcCccccCCHHHHHHHHHHHHhC-----CCceEEEEcCCCCCCCcccCCCchhHHHhhcC---Cc-ceeeccChhhh
Q 012678 274 MYVSFGSIVVVNVTEFLEIAWGLANS-----RVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDG---RG-HIVKWAPQQEV 344 (458)
Q Consensus 274 i~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~-~~~~~ipq~~l 344 (458)
+++..|-.. ..+.+..++++++.. +.+ +..+|.+. .-+.+.+..++ +. .+.++.+..++
T Consensus 230 ~~l~vGRL~--~eK~~~~Li~a~~~l~~~~~~~~-l~ivGdGp---------~~~~L~~~a~~l~l~~~vf~G~~~~~~~ 297 (462)
T PLN02846 230 GAYYIGKMV--WSKGYKELLKLLHKHQKELSGLE-VDLYGSGE---------DSDEVKAAAEKLELDVRVYPGRDHADPL 297 (462)
T ss_pred EEEEEecCc--ccCCHHHHHHHHHHHHhhCCCeE-EEEECCCc---------cHHHHHHHHHhcCCcEEEECCCCCHHHH
Confidence 344456655 455566677776642 222 33444332 22333322221 11 24466666678
Q ss_pred hcCCCcccccccc----CchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 345 LAHPAVGGFWTHN----GWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 345 l~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
+...++ ||.-+ =.+++.||+++|+|+|+.-..+ + ..+.+. +-|...+ +.+++.+++.+++++
T Consensus 298 ~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~~---~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 298 FHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTYD---DGKGFVRATLKALAE 363 (462)
T ss_pred HHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEecC---CHHHHHHHHHHHHcc
Confidence 988888 88764 3479999999999999986443 2 444442 4454442 688999999999986
No 85
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.78 E-value=3.4e-06 Score=81.76 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=95.7
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHhC--CCceEEEEcCCCCCCCcccCCCchhHHHh---hc---CCcce-eeccCh
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLANS--RVPFLWVVRPGLVPGVEWLEPLPKGFLEM---LD---GRGHI-VKWAPQ 341 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~---~~---~~~~~-~~~ipq 341 (458)
+..+++..|... +.+.+..+++|++.. +.++++..++... ..+-+.+.+. .. +++.+ ..++++
T Consensus 200 ~~~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (388)
T TIGR02149 200 SRPYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPDT------PEVAEEVRQAVALLDRNRTGIIWINKMLPK 271 (388)
T ss_pred CceEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCCc------HHHHHHHHHHHHHhccccCceEEecCCCCH
Confidence 334566667765 345566677777765 3455444433220 0111222211 11 22333 367775
Q ss_pred hh---hhcCCCccccccc----cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC-ccc----HHHHHH
Q 012678 342 QE---VLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER-KFE----RREIET 409 (458)
Q Consensus 342 ~~---ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~----~~~l~~ 409 (458)
.+ ++..+++ +|.= |...++.||+++|+|+|+... ......+++. +.|..++. +.+ .+++.+
T Consensus 272 ~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~ 344 (388)
T TIGR02149 272 EELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAK 344 (388)
T ss_pred HHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHH
Confidence 43 7888888 7752 223578999999999998654 3466677763 67888775 221 289999
Q ss_pred HHHHHhccch-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 410 AIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 410 ~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
+|.++++|.+ .+.+.+++++.. . +.=+....++++++..++
T Consensus 345 ~i~~l~~~~~~~~~~~~~a~~~~---~----~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 345 AINILLADPELAKKMGIAGRKRA---E----EEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHH---H----HhCCHHHHHHHHHHHHHh
Confidence 9999998831 223333333322 1 334567777777777665
No 86
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.76 E-value=4.2e-05 Score=78.47 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=52.5
Q ss_pred CCcceeecc-Ch---hhhhcC-CC-ccccccc---cC-chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC
Q 012678 331 GRGHIVKWA-PQ---QEVLAH-PA-VGGFWTH---NG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER 400 (458)
Q Consensus 331 ~~~~~~~~i-pq---~~ll~~-~~-~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 400 (458)
+++.+.++. +. .+++.+ ++ .++||.- =| .-++.||+++|+|+|+.-. ...+..+++. ..|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQDG-VSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC
Confidence 566666664 32 234442 22 1226643 23 3599999999999998644 3466677774 67888886
Q ss_pred cccHHHHHHHHHHHh
Q 012678 401 KFERREIETAIRRVT 415 (458)
Q Consensus 401 ~~~~~~l~~~i~~ll 415 (458)
-++++++++|.+++
T Consensus 694 -~D~eaLA~aL~~ll 707 (784)
T TIGR02470 694 -YHGEEAAEKIVDFF 707 (784)
T ss_pred -CCHHHHHHHHHHHH
Confidence 57899999998876
No 87
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.74 E-value=1.9e-05 Score=75.17 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=69.2
Q ss_pred CCcceeeccCh-hhhhcCCCccccccccC----chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHH
Q 012678 331 GRGHIVKWAPQ-QEVLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 405 (458)
Q Consensus 331 ~~~~~~~~ipq-~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 405 (458)
+++.+.+...+ ..++..+++ +|..+. .+++.||+++|+|+|+.. ...+...+.+ .|..++. -+.+
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~~-~~~~ 320 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVPP-GDPE 320 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeCC-CCHH
Confidence 34455554443 458889998 886544 379999999999999854 3445555554 3555554 4789
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 406 EIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 406 ~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
++.++|.+++++. +.+++..++.++.++ +.-+..+.++.+.+..
T Consensus 321 ~l~~~i~~l~~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y 364 (365)
T cd03807 321 ALAEAIEALLADP--ALRQALGEAARERIE----ENFSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHh
Confidence 9999999999883 222222233333333 4456667777666654
No 88
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.72 E-value=4.2e-06 Score=81.39 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=71.1
Q ss_pred CCcceeeccCh-hhhhcCCCccccc--cc--cCc-hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccH
Q 012678 331 GRGHIVKWAPQ-QEVLAHPAVGGFW--TH--NGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFER 404 (458)
Q Consensus 331 ~~~~~~~~ipq-~~ll~~~~~~~~I--~H--gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 404 (458)
+++.+.+++++ ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. .... |.|..+. -++
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~--~~~ 349 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA--ADP 349 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC--CCH
Confidence 46678899986 448889998 76 32 454 47999999999999988643221 1232 6676665 489
Q ss_pred HHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 405 REIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 405 ~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
+++.++|.++++|.+ ...+.+++++.. . +.-+-...++.+.+.+.
T Consensus 350 ~~la~ai~~ll~~~~~~~~~~~~ar~~v---~----~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 350 ADFAAAILALLANPAEREELGQAARRRV---L----QHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHH---H----HhCCHHHHHHHHHHHhc
Confidence 999999999999832 223333333322 1 33456666666665543
No 89
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.71 E-value=6.7e-06 Score=79.32 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=73.9
Q ss_pred CCcceeeccCh-hhhhcCCCcccccc--c--cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHH
Q 012678 331 GRGHIVKWAPQ-QEVLAHPAVGGFWT--H--NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 405 (458)
Q Consensus 331 ~~~~~~~~ipq-~~ll~~~~~~~~I~--H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 405 (458)
+++.+.++..+ ..++..+++ +|. + |-.+++.||+++|+|+|+... ..+...+++. ..|..++. -+++
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~-~d~~ 326 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPP-GDAV 326 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCC-CCHH
Confidence 34455555443 558889998 763 2 335799999999999999664 3456666663 56777765 5789
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 406 EIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 406 ~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
++.++|.+++++ +..++ +++...++.....=+....++++++..++
T Consensus 327 ~la~~i~~l~~~---~~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 327 ALARALQPYVSD---PAARR---AHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred HHHHHHHHHHhC---HHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999987 33222 12222222222345677777777777654
No 90
>PLN00142 sucrose synthase
Probab=98.70 E-value=9.6e-06 Score=83.15 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=41.2
Q ss_pred cccc---cCc-hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHh
Q 012678 353 FWTH---NGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT 415 (458)
Q Consensus 353 ~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll 415 (458)
||.- -|. .++.||+++|+|+|+... ......|++. ..|..++. -+++++.++|.+++
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV~P-~D~eaLA~aI~~lL 730 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHIDP-YHGDEAANKIADFF 730 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC-CCHHHHHHHHHHHH
Confidence 7653 444 489999999999988654 3456677763 56888876 57788888876644
No 91
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.66 E-value=2e-05 Score=77.77 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=103.7
Q ss_pred CCCccccC-CccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHH--hC--CCceEEEEc
Q 012678 234 PIPMFPIG-PFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLA--NS--RVPFLWVVR 308 (458)
Q Consensus 234 ~~pv~~vG-pl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~--~~--~~~~i~~~~ 308 (458)
+.++.||| |+....+. .+..++..+-+.-.+++++|-+-.||...-=...+-.+++|.+ .. +.+++....
T Consensus 380 gv~v~yVGHPL~d~i~~-----~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a 454 (608)
T PRK01021 380 PLRTVYLGHPLVETISS-----FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSA 454 (608)
T ss_pred CCCeEEECCcHHhhccc-----CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecC
Confidence 67799999 77765321 1122222333333346789999999977522223344556665 32 344544332
Q ss_pred CCCCCCCcccCCCchhHHHhhcC-C---cceeeccChhhhhcCCCccccccccCchhHHHHHhhCCcccccc-cccchhh
Q 012678 309 PGLVPGVEWLEPLPKGFLEMLDG-R---GHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQP-CFGDQLV 383 (458)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~-~---~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P-~~~DQ~~ 383 (458)
... ..+.+.+...+ + +.++.--...+++..|++ .+.-+| ..|+|+...|+||+++= +..=-+.
T Consensus 455 ~~~---------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty~ 522 (608)
T PRK01021 455 NPK---------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLRPFDTF 522 (608)
T ss_pred chh---------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecCHHHHH
Confidence 211 11222221111 1 112210012578999998 888777 56789999999999852 2222334
Q ss_pred HHHHHHHH---------Hhcceec----C--C-cccHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhCCChHH
Q 012678 384 NARYVSHV---------WRVGLHL----E--R-KFERREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQ 446 (458)
Q Consensus 384 na~~v~~~---------~G~G~~l----~--~-~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~ 446 (458)
.|+++.+. +=+|..+ - . +.|++.|.+++ +++.|.+ .+++++..+++++++ |+...
T Consensus 523 Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L-------g~~~~ 594 (608)
T PRK01021 523 LAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM-------NESAS 594 (608)
T ss_pred HHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh-------cCCCC
Confidence 45554430 0112222 2 2 57899999997 8887732 344555555555444 33444
Q ss_pred HHHHHHHHH
Q 012678 447 SLERLVDHI 455 (458)
Q Consensus 447 ~~~~~~~~~ 455 (458)
+.+|.+..|
T Consensus 595 ~~~~~~~~~ 603 (608)
T PRK01021 595 TMKECLSLI 603 (608)
T ss_pred CHHHHHHHH
Confidence 455554443
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.57 E-value=1.1e-05 Score=77.24 Aligned_cols=88 Identities=17% Similarity=0.266 Sum_probs=59.1
Q ss_pred hcCCcceeeccChhh---hhcCCCccccccc----cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCc
Q 012678 329 LDGRGHIVKWAPQQE---VLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERK 401 (458)
Q Consensus 329 ~~~~~~~~~~ipq~~---ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 401 (458)
..+++.+.+++|+.+ ++..+++ +|.- |..+++.||+++|+|+|+....+ ....+.+ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~---~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD---AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC---ceeeeCC-
Confidence 345667889998754 7788888 6533 23468999999999999865432 2222333 2444443
Q ss_pred ccHHHHHHHHHHHhccchhHHHHHHHHH
Q 012678 402 FERREIETAIRRVTVEAEGQEMRERIMH 429 (458)
Q Consensus 402 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 429 (458)
.+.+++.++|.++++| +..+.+..+
T Consensus 321 ~~~~~~~~~i~~l~~~---~~~~~~~~~ 345 (365)
T cd03809 321 LDPEALAAAIERLLED---PALREELRE 345 (365)
T ss_pred CCHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 4789999999999998 454444433
No 93
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.57 E-value=1e-05 Score=79.08 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=55.5
Q ss_pred cCCcceeeccChhh---hhcCCCccccccc---cC-chhHHHHHhhCCcccccccccchhhHHHHHH---HHHhcceecC
Q 012678 330 DGRGHIVKWAPQQE---VLAHPAVGGFWTH---NG-WNSTLESICEGVPMICQPCFGDQLVNARYVS---HVWRVGLHLE 399 (458)
Q Consensus 330 ~~~~~~~~~ipq~~---ll~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~---~~~G~G~~l~ 399 (458)
.+++.+.+++|+.+ +|..+++ +|+- -| ..++.||+++|+|+|+.-..+. ....++ +. ..|....
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~~ 377 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLAS 377 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEeC
Confidence 46778889998754 7888888 6642 12 2488999999999998654331 112233 32 5676532
Q ss_pred CcccHHHHHHHHHHHhccc
Q 012678 400 RKFERREIETAIRRVTVEA 418 (458)
Q Consensus 400 ~~~~~~~l~~~i~~ll~~~ 418 (458)
+++++.++|.++++++
T Consensus 378 ---d~~~la~ai~~ll~~~ 393 (419)
T cd03806 378 ---TAEEYAEAIEKILSLS 393 (419)
T ss_pred ---CHHHHHHHHHHHHhCC
Confidence 8999999999999863
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.52 E-value=0.00012 Score=75.10 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=74.6
Q ss_pred cCCcceeeccCh-hhhhcCCCcccccc---ccCc-hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC-ccc
Q 012678 330 DGRGHIVKWAPQ-QEVLAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER-KFE 403 (458)
Q Consensus 330 ~~~~~~~~~ipq-~~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~ 403 (458)
.+++.+.+|.++ ..++..+++ +|. +.|. +++.||+++|+|+|+.... .....+++. ..|..++. +.+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~d~~ 645 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPADTVT 645 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCCCCC
Confidence 366778888875 448888888 664 4554 7999999999999997653 355667663 56888876 566
Q ss_pred HHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 404 RREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 404 ~~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
++++.+++.+++.+-. .+.+++++++... +.=+....+++.++..+
T Consensus 646 ~~~La~aL~~ll~~l~~~~~l~~~ar~~a~-------~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 646 APDVAEALARIHDMCAADPGIARKAADWAS-------ARFSLNQMIASTVRCYQ 692 (694)
T ss_pred hHHHHHHHHHHHhChhccHHHHHHHHHHHH-------HhCCHHHHHHHHHHHhC
Confidence 6677777766654310 1566665554432 23356666666666543
No 95
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.51 E-value=2.8e-05 Score=74.33 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=56.1
Q ss_pred CCcceeeccCh-hhhhcCCCccccccc----cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHH
Q 012678 331 GRGHIVKWAPQ-QEVLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 405 (458)
Q Consensus 331 ~~~~~~~~ipq-~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 405 (458)
+++.+.++..+ ..++..+++ +|+- |-.+++.||+++|+|+|+....+ ....+.+ +.|..... -+++
T Consensus 249 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~-~~~~ 319 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD-ESPE 319 (358)
T ss_pred CcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC-CCHH
Confidence 55667777544 558888888 6653 34579999999999999865543 3444554 44544443 4689
Q ss_pred HHHHHHHHHhcc
Q 012678 406 EIETAIRRVTVE 417 (458)
Q Consensus 406 ~l~~~i~~ll~~ 417 (458)
+++++|.++++|
T Consensus 320 ~~a~~i~~l~~~ 331 (358)
T cd03812 320 IWAEEILKLKSE 331 (358)
T ss_pred HHHHHHHHHHhC
Confidence 999999999998
No 96
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.49 E-value=1.1e-05 Score=77.03 Aligned_cols=124 Identities=13% Similarity=0.145 Sum_probs=86.5
Q ss_pred EEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChh---hhhcCCCcc
Q 012678 275 YVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQ---EVLAHPAVG 351 (458)
Q Consensus 275 ~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~---~ll~~~~~~ 351 (458)
++..|+.. ..+.+..++++++..+.++++.-.+. ..+.+.+...+|+.+.+++|+. .++..+++
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~----------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~- 264 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP----------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA- 264 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh----------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE-
Confidence 45567765 44557778888888876665544332 1233333456788899999984 47888998
Q ss_pred ccc--cccCc-hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccc
Q 012678 352 GFW--THNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEA 418 (458)
Q Consensus 352 ~~I--~HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~ 418 (458)
+| +.-|. .++.||+++|+|+|+....+ ....+++. +.|..++. -+++++.++|.++++|.
T Consensus 265 -~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 265 -FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-QTVESLAAAVERFEKNE 327 (351)
T ss_pred -EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-CCHHHHHHHHHHHHhCc
Confidence 65 33344 46789999999999986533 44556663 67887775 57899999999999883
No 97
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.47 E-value=3.3e-05 Score=72.85 Aligned_cols=195 Identities=17% Similarity=0.127 Sum_probs=105.7
Q ss_pred CCCccccC-CccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHh---C--CCceEEEE
Q 012678 234 PIPMFPIG-PFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLAN---S--RVPFLWVV 307 (458)
Q Consensus 234 ~~pv~~vG-pl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~---~--~~~~i~~~ 307 (458)
+.++.||| |+...... ........+.+ -..++++|.+-.||...-=...+-.++++.+. . +.++++..
T Consensus 152 g~~~~~VGHPl~d~~~~-----~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~ 225 (373)
T PF02684_consen 152 GVPVTYVGHPLLDEVKP-----EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPV 225 (373)
T ss_pred CCCeEEECCcchhhhcc-----CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 56799999 77765432 11111122222 22378899999999775112222333444333 2 34555554
Q ss_pred cCCCCCCCcccCCCchhHHHhhcCCccee-eccChhhhhcCCCccccccccCchhHHHHHhhCCccccccc-ccchhhHH
Q 012678 308 RPGLVPGVEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC-FGDQLVNA 385 (458)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~-~~DQ~~na 385 (458)
.... ...+-.........+..+. ..-.-.+++..+++ .+.-.| ..|+|+...|+|||++=- ..=-+..|
T Consensus 226 a~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~ia 296 (373)
T PF02684_consen 226 APEV------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIA 296 (373)
T ss_pred CCHH------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHH
Confidence 3321 0000001111111122222 22234568888888 777676 578999999999998632 22344455
Q ss_pred HHHHHHHhc--------ceec-----CCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHH
Q 012678 386 RYVSHVWRV--------GLHL-----ERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQS 447 (458)
Q Consensus 386 ~~v~~~~G~--------G~~l-----~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~ 447 (458)
+++.. ... |..+ ..+.|++.+.+++.++++| +..++..+...+.+++..+.+.++..+
T Consensus 297 k~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 297 KRLVK-VKYISLPNIIAGREVVPELIQEDATPENIAAELLELLEN---PEKRKKQKELFREIRQLLGPGASSRAA 367 (373)
T ss_pred HHhhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccCCHHH
Confidence 55543 122 1111 1168999999999999999 444555555555555544455555443
No 98
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.44 E-value=9e-05 Score=71.42 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=70.8
Q ss_pred CCcceeecc--Chh---hhhcCCCcccccccc---C-chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCc
Q 012678 331 GRGHIVKWA--PQQ---EVLAHPAVGGFWTHN---G-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERK 401 (458)
Q Consensus 331 ~~~~~~~~i--pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 401 (458)
+++.+..+. ++. .++..+++ ++.-. | -.++.||+++|+|+|+.... .....+.+. ..|...+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC--
Confidence 456677776 432 47788888 87543 2 35999999999999987543 234456553 5676544
Q ss_pred ccHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012678 402 FERREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 458 (458)
Q Consensus 402 ~~~~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (458)
+.+++..+|.+++++++ .+.+.+++++.. . +.-+-...++++++.++++
T Consensus 323 -~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~---~----~~~s~~~~~~~~~~~~~~~ 372 (372)
T cd03792 323 -TVEEAAVRILYLLRDPELRRKMGANAREHV---R----ENFLITRHLKDYLYLISKL 372 (372)
T ss_pred -CcHHHHHHHHHHHcCHHHHHHHHHHHHHHH---H----HHcCHHHHHHHHHHHHHhC
Confidence 45678889999998821 223333333321 1 3445777888888877653
No 99
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.42 E-value=6.4e-05 Score=74.88 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=90.8
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHh---CCCceEEEEcCCCCCCCcccCCCchhH---HHhhcCCcceeeccChh--
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLAN---SRVPFLWVVRPGLVPGVEWLEPLPKGF---LEMLDGRGHIVKWAPQQ-- 342 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~ipq~-- 342 (458)
+..+++..|.... .+.+..+++|+.. .+.++++.-.+.. ...+.+ .++.+.++.+....+..
T Consensus 290 ~~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~~--------~~~~~l~~~~~~~~~~v~~~~~~~~~~~ 359 (473)
T TIGR02095 290 DVPLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVLGTGDP--------ELEEALRELAERYPGNVRVIIGYDEALA 359 (473)
T ss_pred CCCEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEECCCCH--------HHHHHHHHHHHHCCCcEEEEEcCCHHHH
Confidence 3456666777664 3334445555443 3455544432210 011222 22333455555545543
Q ss_pred -hhhcCCCccccccc---cCc-hhHHHHHhhCCccccccccc--chhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHh
Q 012678 343 -EVLAHPAVGGFWTH---NGW-NSTLESICEGVPMICQPCFG--DQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT 415 (458)
Q Consensus 343 -~ll~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll 415 (458)
.++..+++ +|.- -|. .+.+||+++|+|+|+....+ |.-.+...-... +.|..++. -+++++.++|.+++
T Consensus 360 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~-~d~~~la~~i~~~l 435 (473)
T TIGR02095 360 HLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE-YDPGALLAALSRAL 435 (473)
T ss_pred HHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC-CCHHHHHHHHHHHH
Confidence 47788888 7743 244 38899999999999876542 221111000121 67877765 68899999999988
Q ss_pred c----cchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012678 416 V----EAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 458 (458)
Q Consensus 416 ~----~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (458)
+ + +..++ ++++.. ....=|-.+.+++.++..+++
T Consensus 436 ~~~~~~---~~~~~---~~~~~~---~~~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 436 RLYRQD---PSLWE---ALQKNA---MSQDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HHHhcC---HHHHH---HHHHHH---hccCCCcHHHHHHHHHHHHhC
Confidence 6 4 33222 222222 224556777788888777654
No 100
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.41 E-value=1.2e-06 Score=68.54 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=77.1
Q ss_pred CcEEEEEcCccccC---CHHHHHHHHHHHHhCCC-ceEEEEcCCCCCCCcccCCCchhHHHhhcCCcc-e--eeccCh-h
Q 012678 271 KSVMYVSFGSIVVV---NVTEFLEIAWGLANSRV-PFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGH-I--VKWAPQ-Q 342 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~---~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~--~~~ipq-~ 342 (458)
...+|||.||.... ..-.-.+..+.|.+.|+ +.+..++.+... .++....-...-.. + .+|-|- .
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~k~~gl~id~y~f~psl~ 75 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIRKNGGLTIDGYDFSPSLT 75 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhcccCCeEEEEEecCccHH
Confidence 34799999997741 11112335566777776 567777765311 11211100011112 2 277775 6
Q ss_pred hhhcCCCccccccccCchhHHHHHhhCCccccccc----ccchhhHHHHHHHHHhcceec
Q 012678 343 EVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC----FGDQLVNARYVSHVWRVGLHL 398 (458)
Q Consensus 343 ~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G~~l 398 (458)
+..+.+++ +|+|+|.||++|.|..|+|.|+++- -..|-.-|..+++. |.=..-
T Consensus 76 e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C 132 (170)
T KOG3349|consen 76 EDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYC 132 (170)
T ss_pred HHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEe
Confidence 67777888 9999999999999999999999994 36899999999884 654433
No 101
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.38 E-value=2.2e-05 Score=72.39 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=115.4
Q ss_pred CCCccccC-CccccccccCCCcccCccccchhhccCCCCcEEEEEcCccccCCHH---HHHHHHHHHHh--CCCceEEEE
Q 012678 234 PIPMFPIG-PFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVT---EFLEIAWGLAN--SRVPFLWVV 307 (458)
Q Consensus 234 ~~pv~~vG-pl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~---~~~~~~~al~~--~~~~~i~~~ 307 (458)
+-|..||| |+....+. .+....+.+-+....+++++.+-.||..+-=.. .+...++.++. .+.+++..+
T Consensus 155 g~~~~yVGHpl~d~i~~-----~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~ 229 (381)
T COG0763 155 GLPCTYVGHPLADEIPL-----LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPL 229 (381)
T ss_pred CCCeEEeCChhhhhccc-----cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 55699999 66655432 223333444444445788999999998761111 22223333332 245666655
Q ss_pred cCCCCCCCcccCCCchhHHHhhcCCc-ceeecc-Ch--hhhhcCCCccccccccCchhHHHHHhhCCcccccccc-cchh
Q 012678 308 RPGLVPGVEWLEPLPKGFLEMLDGRG-HIVKWA-PQ--QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCF-GDQL 382 (458)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~i-pq--~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~-~DQ~ 382 (458)
.... .+.+-..+ ...+. ...-++ ++ .+.+..|++ .+.-+| .-+.|+..+|+|||+.=-. .=-+
T Consensus 230 ~~~~------~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it~ 297 (381)
T COG0763 230 VNAK------YRRIIEEA---LKWEVAGLSLILIDGEKRKAFAAADA--ALAASG-TATLEAALAGTPMVVAYKVKPITY 297 (381)
T ss_pred CcHH------HHHHHHHH---hhccccCceEEecCchHHHHHHHhhH--HHHhcc-HHHHHHHHhCCCEEEEEeccHHHH
Confidence 4322 01111111 11111 122222 22 236777887 887777 4578999999999875211 1122
Q ss_pred hHHHHHHHHHhc--------ceecC----C-cccHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHhhCCChHHHH
Q 012678 383 VNARYVSHVWRV--------GLHLE----R-KFERREIETAIRRVTVEA-EGQEMRERIMHLKEKLELSLLEAGSSYQSL 448 (458)
Q Consensus 383 ~na~~v~~~~G~--------G~~l~----~-~~~~~~l~~~i~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 448 (458)
..|++... ... |..+- . ..+++.|.+++.+++.|+ +...+++..+.++..++ .+++++.++
T Consensus 298 ~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA 372 (381)
T COG0763 298 FIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAA 372 (381)
T ss_pred HHHHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHH
Confidence 23333322 111 11111 1 578999999999999995 34677888888888777 566888888
Q ss_pred HHHHHHHh
Q 012678 449 ERLVDHIL 456 (458)
Q Consensus 449 ~~~~~~~~ 456 (458)
+.+++.+.
T Consensus 373 ~~vl~~~~ 380 (381)
T COG0763 373 QAVLELLL 380 (381)
T ss_pred HHHHHHhc
Confidence 88888764
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.37 E-value=4.2e-05 Score=75.94 Aligned_cols=167 Identities=12% Similarity=0.127 Sum_probs=88.0
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHh---CCCceEEEEcCCCCCCCcccCCCchhH---HHhhcCCcce-eeccCh--
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLAN---SRVPFLWVVRPGLVPGVEWLEPLPKGF---LEMLDGRGHI-VKWAPQ-- 341 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~-~~~ipq-- 341 (458)
+..+++..|.... .+.+..+++|++. .+.++++.-.+.. ...+.+ .+..+.++.+ ..|-..
T Consensus 281 ~~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~~--------~~~~~l~~l~~~~~~~v~~~~g~~~~~~ 350 (466)
T PRK00654 281 DAPLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGDP--------ELEEAFRALAARYPGKVGVQIGYDEALA 350 (466)
T ss_pred CCcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCcH--------HHHHHHHHHHHHCCCcEEEEEeCCHHHH
Confidence 4456666777663 3445555555544 3556655532211 011122 2223344443 355322
Q ss_pred hhhhcCCCccccccc---cCc-hhHHHHHhhCCccccccccc--chhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHh
Q 012678 342 QEVLAHPAVGGFWTH---NGW-NSTLESICEGVPMICQPCFG--DQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT 415 (458)
Q Consensus 342 ~~ll~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll 415 (458)
..++..+++ +|.- -|. .+.+||+++|+|.|+....+ |.-.+...-.+. +.|..++. -++++|.++|.+++
T Consensus 351 ~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-~d~~~la~~i~~~l 426 (466)
T PRK00654 351 HRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-FNAEDLLRALRRAL 426 (466)
T ss_pred HHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-CCHHHHHHHHHHHH
Confidence 247788888 7753 344 48899999999999875432 221111111222 67887775 68899999999988
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 416 VEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 416 ~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
+....+..+ ++++.... ...=+-.+.+++.++..++
T Consensus 427 ~~~~~~~~~---~~~~~~~~---~~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 427 ELYRQPPLW---RALQRQAM---AQDFSWDKSAEEYLELYRR 462 (466)
T ss_pred HHhcCHHHH---HHHHHHHh---ccCCChHHHHHHHHHHHHH
Confidence 631001211 22222221 1344566666666665543
No 103
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.35 E-value=6.3e-05 Score=71.87 Aligned_cols=131 Identities=14% Similarity=0.096 Sum_probs=79.8
Q ss_pred CCcEEEEEcCccc--c-CCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhh--cCCcceeeccC---h
Q 012678 270 AKSVMYVSFGSIV--V-VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEML--DGRGHIVKWAP---Q 341 (458)
Q Consensus 270 ~~~~i~vs~Gs~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~ip---q 341 (458)
+++.|++++=-.. . ...+.+..+++++...+..+++.++... +. ...+-+.+.+.. .+++.+.+-++ .
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~---~~~i~~~i~~~~~~~~~v~l~~~l~~~~~ 275 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AG---SRIINEAIEEYVNEHPNFRLFKSLGQERY 275 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CC---chHHHHHHHHHhcCCCCEEEECCCChHHH
Confidence 3468778775433 2 4566789999999887766666654321 11 000112222212 24567775554 4
Q ss_pred hhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhc
Q 012678 342 QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTV 416 (458)
Q Consensus 342 ~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~ 416 (458)
..++.++++ +||.++.+- .||.+.|+|+|.+- + .-.-+ +. |.-+.+- ..++++|.+++.++++
T Consensus 276 l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~---R~e~~-~~-g~nvl~v-g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 276 LSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---T---RQKGR-LR-ADSVIDV-DPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---C---Cchhh-hh-cCeEEEe-CCCHHHHHHHHHHHhC
Confidence 558899999 999876555 99999999999763 2 11111 21 3332211 3589999999999654
No 104
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=0.00055 Score=64.11 Aligned_cols=331 Identities=13% Similarity=0.122 Sum_probs=174.5
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhC--CCEEEEEe-CCCCCCCCCC-C-CCceEEecCCCCCCCccCcccHHHHHHHHHH
Q 012678 17 VILFPLPLQGHINPMLQLASILYSK--GFSITIIH-TNFNSPNPSN-Y-PHFSFNSISESLWESEVSTENAISLLTVLND 91 (458)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (458)
.+-+=.-+.|-++..++|.++|.++ +..|++-+ ++-..+.... . ..+...-+|-.++
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~------------------ 112 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP------------------ 112 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch------------------
Confidence 4445555779999999999999999 88888766 4322222111 1 1133333341111
Q ss_pred hcChhHHHHHHHHhhCCCCCCCeeEEEecC--chhhHHHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCC
Q 012678 92 KCVVPFQDCLAKLISNGDQEEPVTCLITDA--IWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQ 169 (458)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~--~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 169 (458)
..++++++. ++||++|.-. +.+....-+++.|+|.+.+..=-. ..+
T Consensus 113 -------~~v~rFl~~----~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS-------------~rS-------- 160 (419)
T COG1519 113 -------IAVRRFLRK----WRPKLLIIMETELWPNLINELKRRGIPLVLVNARLS-------------DRS-------- 160 (419)
T ss_pred -------HHHHHHHHh----cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec-------------hhh--------
Confidence 122233322 6799887555 345556678889999998533200 000
Q ss_pred CccccCCCCCCCCCCCCCcccCCCchHHHHHHHHH-hhccCccEEEEcChhhhhHHHHHHhhhcCC-CCccccCCccccc
Q 012678 170 LEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVV-SKTKACSGLIWNSFEDLEQTELTRLHKDFP-IPMFPIGPFHKYC 247 (458)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~pv~~vGpl~~~~ 247 (458)
.. -++.+..+. ..+.+.++++.+|..+-+ .+. . ++ +++...|-+-...
T Consensus 161 -----------------------~~-~y~k~~~~~~~~~~~i~li~aQse~D~~--Rf~---~-LGa~~v~v~GNlKfd~ 210 (419)
T COG1519 161 -----------------------FA-RYAKLKFLARLLFKNIDLILAQSEEDAQ--RFR---S-LGAKPVVVTGNLKFDI 210 (419)
T ss_pred -----------------------hH-HHHHHHHHHHHHHHhcceeeecCHHHHH--HHH---h-cCCcceEEecceeecC
Confidence 00 011122222 234566777777754433 221 1 22 3367777655543
Q ss_pred cccCCCcccCcc-ccchhhccCCCCcEEEEEcCccccCCHHHHHHHHHHHHhCC--CceEEEEcCCCCCCCcccCCCchh
Q 012678 248 LASSSSLLSQDQ-SCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSR--VPFLWVVRPGLVPGVEWLEPLPKG 324 (458)
Q Consensus 248 ~~~~~~~~~~~~-~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~l~~~ 324 (458)
.. .+... ....|=..-+....+.|..+|-. ...+.+.....++.+.. ...||+=+ . ++.. +.
T Consensus 211 ~~-----~~~~~~~~~~~r~~l~~~r~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPR-H-------pERf-~~ 275 (419)
T COG1519 211 EP-----PPQLAAELAALRRQLGGHRPVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPR-H-------PERF-KA 275 (419)
T ss_pred CC-----ChhhHHHHHHHHHhcCCCCceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecC-C-------hhhH-HH
Confidence 32 11111 11122222122134555555622 23444555666666542 44555422 1 1111 11
Q ss_pred HHHhhcCC------------------cceeeccC-hhhhhcCCCc---c-ccccccCchhHHHHHhhCCcccccccccch
Q 012678 325 FLEMLDGR------------------GHIVKWAP-QQEVLAHPAV---G-GFWTHNGWNSTLESICEGVPMICQPCFGDQ 381 (458)
Q Consensus 325 ~~~~~~~~------------------~~~~~~ip-q~~ll~~~~~---~-~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ 381 (458)
+++..... +.+.+-+= ...++.-+++ + -++-+||+| ..|++++|+|+|.=|...-|
T Consensus 276 v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf 354 (419)
T COG1519 276 VENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNF 354 (419)
T ss_pred HHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccH
Confidence 22222222 12222111 1112222222 1 155699988 67999999999999999999
Q ss_pred hhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 382 LVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 382 ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
.+.++++..+ |.|+.++. .+.|.+++..+++|++ .+.|.+++.++=...+ .+.++.++.+++
T Consensus 355 ~ei~~~l~~~-ga~~~v~~---~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~----------gal~r~l~~l~~ 417 (419)
T COG1519 355 SDIAERLLQA-GAGLQVED---ADLLAKAVELLLADEDKREAYGRAGLEFLAQNR----------GALARTLEALKP 417 (419)
T ss_pred HHHHHHHHhc-CCeEEECC---HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHhhh
Confidence 9999999996 99998884 7888889999998732 3444444444433333 355555555543
No 105
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.32 E-value=1.1e-05 Score=76.10 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=81.0
Q ss_pred CCCcEEEEEcCccccCC----HHHHHHHHHHHHhC-CCceEEEEcCCCCCCCcccCCCchhHHHhhc--CCcceeeccC-
Q 012678 269 AAKSVMYVSFGSIVVVN----VTEFLEIAWGLANS-RVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD--GRGHIVKWAP- 340 (458)
Q Consensus 269 ~~~~~i~vs~Gs~~~~~----~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~ip- 340 (458)
..++.+++++=...... ...+..+++++.+. +.++||.+.+.... .+.+.+... +|+++.+-++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~--------~~~i~~~l~~~~~v~~~~~l~~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRG--------SDIIIEKLKKYDNVRLIEPLGY 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHH--------HHHHHHHHTT-TTEEEE----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchH--------HHHHHHHhcccCCEEEECCCCH
Confidence 47889999984444433 34455566777766 67899988743211 122222221 3667775555
Q ss_pred --hhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccc
Q 012678 341 --QQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEA 418 (458)
Q Consensus 341 --q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~ 418 (458)
...+|.++++ +|+..| |-..||.+.|+|+|.+ -|+...-+-+.. |..+.. ..+++++.++|++++++
T Consensus 250 ~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i---R~~geRqe~r~~--~~nvlv--~~~~~~I~~ai~~~l~~- 318 (346)
T PF02350_consen 250 EEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI---RDSGERQEGRER--GSNVLV--GTDPEAIIQAIEKALSD- 318 (346)
T ss_dssp HHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC---SSS-S-HHHHHT--TSEEEE--TSSHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe---cCCCCCHHHHhh--cceEEe--CCCHHHHHHHHHHHHhC-
Confidence 4568899999 999999 4444999999999999 232222222222 445443 36899999999999976
Q ss_pred hhHHHHHHHHH
Q 012678 419 EGQEMRERIMH 429 (458)
Q Consensus 419 ~~~~~~~~a~~ 429 (458)
....++...
T Consensus 319 --~~~~~~~~~ 327 (346)
T PF02350_consen 319 --KDFYRKLKN 327 (346)
T ss_dssp --HHHHHHHHC
T ss_pred --hHHHHhhcc
Confidence 444444433
No 106
>PLN02949 transferase, transferring glycosyl groups
Probab=98.31 E-value=0.00029 Score=69.35 Aligned_cols=112 Identities=18% Similarity=0.104 Sum_probs=69.3
Q ss_pred cCCcceeeccChhh---hhcCCCcccccc---ccCc-hhHHHHHhhCCcccccccccchhhHHHHHHH-HHh-cceecCC
Q 012678 330 DGRGHIVKWAPQQE---VLAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSH-VWR-VGLHLER 400 (458)
Q Consensus 330 ~~~~~~~~~ipq~~---ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~-~~G-~G~~l~~ 400 (458)
.+++.+.+++|+.+ +|..+++ +|+ +-|. .++.||+++|+|+|+....+-- ...+.+ .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 46778889998655 6788888 763 2333 3899999999999998754310 011111 001 23322
Q ss_pred cccHHHHHHHHHHHhccc-h-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 401 KFERREIETAIRRVTVEA-E-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 401 ~~~~~~l~~~i~~ll~~~-~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
-++++++++|.++++++ + ...+.+++++..++ =+.++..+++.+.+.+
T Consensus 407 -~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~--------FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 -TTVEEYADAILEVLRMRETERLEIAAAARKRANR--------FSEQRFNEDFKDAIRP 456 (463)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------cCHHHHHHHHHHHHHH
Confidence 27899999999999842 1 23455555544333 3566666666666543
No 107
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.23 E-value=0.00058 Score=66.30 Aligned_cols=154 Identities=10% Similarity=-0.009 Sum_probs=83.5
Q ss_pred EEEEcCccccCCHHHHHHHHHHHHhCCCce-EEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccC-h---hhhhcCC
Q 012678 274 MYVSFGSIVVVNVTEFLEIAWGLANSRVPF-LWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAP-Q---QEVLAHP 348 (458)
Q Consensus 274 i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip-q---~~ll~~~ 348 (458)
+++..|.......+.+..+++|+...+..+ ++.+|... ...++ ++...++.. + ..++..+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~-------~~~~~--------~v~~~g~~~~~~~l~~~y~~a 307 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS-------PFTAG--------NVVNHGFETDKRKLMSALNQM 307 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC-------ccccc--------ceEEecCcCCHHHHHHHHHhC
Confidence 344445433233455677888888765443 34444321 00111 223445543 2 3356667
Q ss_pred Ccccccccc----CchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccchhHHHH
Q 012678 349 AVGGFWTHN----GWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQEMR 424 (458)
Q Consensus 349 ~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~ 424 (458)
++ ||.-. --.++.||+++|+|+|.....+ ....+.+ +.|..++. -++++|+++++..+.+ ..+.
T Consensus 308 Dv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~-~d~~~La~~~~~~~~~---~~~~ 375 (405)
T PRK10125 308 DA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSE-EEVLQLAQLSKPEIAQ---AVFG 375 (405)
T ss_pred CE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECC-CCHHHHHhccCHHHHH---Hhhh
Confidence 77 77533 2468999999999999997765 2333333 56887776 4778888754322222 1122
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012678 425 ERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 458 (458)
Q Consensus 425 ~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (458)
+..+..+++.. ..=+....+++.++..+++
T Consensus 376 ~~~~~~r~~~~----~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 376 TTLAEFSQRSR----AAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred hHHHHHHHHHH----HhCCHHHHHHHHHHHHHhC
Confidence 11122222222 3446777777777766653
No 108
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.23 E-value=0.00022 Score=70.89 Aligned_cols=163 Identities=10% Similarity=0.087 Sum_probs=99.2
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHhC---CCceE-EEEcCCCCCCCcccCCCchhHHHh-----hcCCcceeeccCh
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLANS---RVPFL-WVVRPGLVPGVEWLEPLPKGFLEM-----LDGRGHIVKWAPQ 341 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i-~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~ipq 341 (458)
++..+++.|... +.+.+..+++|+... ...+- ..+|.+. ..+.+.+. +.+++.+.++.+.
T Consensus 318 ~~~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~---------~~~~l~~~i~~~~l~~~V~f~G~~~~ 386 (500)
T TIGR02918 318 KPFSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEGG---------EKQKLQKIINENQAQDYIHLKGHRNL 386 (500)
T ss_pred CCeEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEEEECch---------hHHHHHHHHHHcCCCCeEEEcCCCCH
Confidence 345666678766 445566666666542 12222 2334322 11222221 2345667788888
Q ss_pred hhhhcCCCcccccc---ccC-chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC---ccc----HHHHHHH
Q 012678 342 QEVLAHPAVGGFWT---HNG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER---KFE----RREIETA 410 (458)
Q Consensus 342 ~~ll~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~---~~~----~~~l~~~ 410 (458)
..++..+++ +|. .-| ..++.||+++|+|+|+.-.. ..+...+++. .-|..++. .-+ .++|+++
T Consensus 387 ~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~ 460 (500)
T TIGR02918 387 SEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEK 460 (500)
T ss_pred HHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCccccchhHHHHHHHHH
Confidence 889999998 775 234 36999999999999997543 1245566653 46776652 112 7889999
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012678 411 IRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 458 (458)
Q Consensus 411 i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (458)
|.++++++....+.+++++.++.+ +..+.++...+.++++
T Consensus 461 I~~ll~~~~~~~~~~~a~~~a~~f--------s~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 461 IVEYFNSNDIDAFHEYSYQIAEGF--------LTANIIEKWKKLVREV 500 (500)
T ss_pred HHHHhChHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhhC
Confidence 999996533445556665554443 4677777777776653
No 109
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.21 E-value=0.0013 Score=63.39 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=65.6
Q ss_pred CCcceeeccChhh---hhcCCCccccc------cccCc-hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC
Q 012678 331 GRGHIVKWAPQQE---VLAHPAVGGFW------THNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER 400 (458)
Q Consensus 331 ~~~~~~~~ipq~~---ll~~~~~~~~I------~HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 400 (458)
+|+.+.+++|+.+ ++.++++.++- +.++. +.+.|++++|+|+|..++ ...++.. + |..+..
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~~ 324 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLIA 324 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEeC
Confidence 6778899999655 67888884332 22333 468999999999998763 2333432 4 333332
Q ss_pred cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 401 KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 401 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
-+++++.++|.+++.+++....+++ ++ +. ..-+-+..++++.+.+++
T Consensus 325 -~d~~~~~~ai~~~l~~~~~~~~~~~-~~----~~----~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 325 -DDPEEFVAAIEKALLEDGPARERRR-LR----LA----AQNSWDARAAEMLEALQE 371 (373)
T ss_pred -CCHHHHHHHHHHHHhcCCchHHHHH-HH----HH----HHCCHHHHHHHHHHHHHh
Confidence 3899999999998765321222211 11 11 234556666666666554
No 110
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.20 E-value=0.00022 Score=71.20 Aligned_cols=166 Identities=11% Similarity=0.061 Sum_probs=86.7
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHh---CCCceEEEEcCCCCCCCcccCCCchhHH---HhhcCCcceeeccChh--
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLAN---SRVPFLWVVRPGLVPGVEWLEPLPKGFL---EMLDGRGHIVKWAPQQ-- 342 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~ipq~-- 342 (458)
+..+++..|.... .+.+..++++++. .+.++++.-.+.. .+.+.+. ++..+|+.+....++.
T Consensus 295 ~~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 364 (476)
T cd03791 295 DAPLFGFVGRLTE--QKGIDLLLEALPELLELGGQLVILGSGDP--------EYEEALRELAARYPGRVAVLIGYDEALA 364 (476)
T ss_pred CCCEEEEEeeccc--cccHHHHHHHHHHHHHcCcEEEEEecCCH--------HHHHHHHHHHHhCCCcEEEEEeCCHHHH
Confidence 4456666777663 3334445555443 3445444432211 0112222 2223555554333432
Q ss_pred -hhhcCCCcccccccc---Cc-hhHHHHHhhCCccccccccc--chhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHh
Q 012678 343 -EVLAHPAVGGFWTHN---GW-NSTLESICEGVPMICQPCFG--DQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT 415 (458)
Q Consensus 343 -~ll~~~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll 415 (458)
.++..+++ ++.-. |. .+.+||+++|+|+|+....+ |.-.+.....+. |.|..++. .+++++.++|.+++
T Consensus 365 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-~~~~~l~~~i~~~l 440 (476)
T cd03791 365 HLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-YNADALLAALRRAL 440 (476)
T ss_pred HHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-CCHHHHHHHHHHHH
Confidence 36778888 77431 22 47899999999999876543 211111111122 57888876 57999999999988
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 416 VEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 416 ~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
+.. .-++...+++++.. ...=+-.+.+++.++..+
T Consensus 441 ~~~---~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 441 ALY---RDPEAWRKLQRNAM---AQDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHH---cCHHHHHHHHHHHh---ccCCChHHHHHHHHHHHh
Confidence 631 11222222332222 233455666666666543
No 111
>PLN02316 synthase/transferase
Probab=98.13 E-value=0.0014 Score=69.34 Aligned_cols=117 Identities=9% Similarity=0.031 Sum_probs=70.4
Q ss_pred CCcceeeccChh---hhhcCCCcccccccc---C-chhHHHHHhhCCccccccccc--chhhHH-------HHHHHHHhc
Q 012678 331 GRGHIVKWAPQQ---EVLAHPAVGGFWTHN---G-WNSTLESICEGVPMICQPCFG--DQLVNA-------RYVSHVWRV 394 (458)
Q Consensus 331 ~~~~~~~~ipq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~na-------~~v~~~~G~ 394 (458)
+++.+....+.. .+++.+++ |+.-. | -.+.+||+++|+|.|+....+ |..... +..... +.
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~t 976 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PN 976 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-Cc
Confidence 345555444543 57888888 88532 2 358999999999888765543 322111 101111 45
Q ss_pred ceecCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 395 GLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 395 G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
|...+. .+++.|..+|.+++.+ |.+....+++..+..+...=|-.+.+++.++..+
T Consensus 977 Gflf~~-~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 977 GFSFDG-ADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred eEEeCC-CCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 777665 6899999999999965 3333334444444444455566666666665544
No 112
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.06 E-value=0.00013 Score=70.38 Aligned_cols=115 Identities=15% Similarity=0.207 Sum_probs=78.3
Q ss_pred hcCCcceeeccChhh---hhcCCCccccccc----cCc-hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC
Q 012678 329 LDGRGHIVKWAPQQE---VLAHPAVGGFWTH----NGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER 400 (458)
Q Consensus 329 ~~~~~~~~~~ipq~~---ll~~~~~~~~I~H----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 400 (458)
...++.+.+++|+.+ ++..+++ +|.. .|. .++.||+++|+|+|+.... .+...+++. ..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC
Confidence 345667889998654 6888898 7753 333 5788999999999997653 355667663 67875543
Q ss_pred cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 401 KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 401 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
..+++++.++|.++++| +..++ +++..++...+.=+-.+.++++.+.+++
T Consensus 328 ~~d~~~la~~I~~ll~d---~~~~~----~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 328 PMTSDSIISDINRTLAD---PELTQ----IAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCCHHHHHHHHHHHHcC---HHHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35899999999999998 54433 2333322222455677777777777654
No 113
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.03 E-value=0.00049 Score=68.92 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=52.2
Q ss_pred cceeeccChh-hhhcCCCcccccccc---C-chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHH
Q 012678 333 GHIVKWAPQQ-EVLAHPAVGGFWTHN---G-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREI 407 (458)
Q Consensus 333 ~~~~~~ipq~-~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 407 (458)
+.+.++.++. ++++.+++ ||.-+ | ..++.||+++|+|+|+.-..+... +.+ |.+..+. -+.+++
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~--~D~Eaf 671 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY--KTSEDF 671 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec--CCHHHH
Confidence 4456677754 48888888 87632 3 468999999999999987765321 323 3332232 378999
Q ss_pred HHHHHHHhcc
Q 012678 408 ETAIRRVTVE 417 (458)
Q Consensus 408 ~~~i~~ll~~ 417 (458)
.++|.+++++
T Consensus 672 AeAI~~LLsd 681 (794)
T PLN02501 672 VAKVKEALAN 681 (794)
T ss_pred HHHHHHHHhC
Confidence 9999999987
No 114
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.99 E-value=0.00018 Score=69.38 Aligned_cols=136 Identities=17% Similarity=0.161 Sum_probs=78.9
Q ss_pred CCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhc------CCcceeeccChh
Q 012678 269 AAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD------GRGHIVKWAPQQ 342 (458)
Q Consensus 269 ~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~ipq~ 342 (458)
+++.++|.||....-..++.+....+.|++.+.-.+|....... -.+++.+.+. +++.+.++.|+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~--------~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS--------GEARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT--------HHHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH--------HHHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 46779999999988899999999999999999888888764321 0122322221 455666777765
Q ss_pred hh---hcCCCccccc---cccCchhHHHHHhhCCcccccccccchhhH-HHHHHHHHhcceecCCcccHHHHHHHHHHHh
Q 012678 343 EV---LAHPAVGGFW---THNGWNSTLESICEGVPMICQPCFGDQLVN-ARYVSHVWRVGLHLERKFERREIETAIRRVT 415 (458)
Q Consensus 343 ~l---l~~~~~~~~I---~HgG~~s~~eal~~GvP~l~~P~~~DQ~~n-a~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll 415 (458)
+- +..+|+ ++ ..+|.+|++|||+.|||+|.+|--.=.-.. |..+.. +|+.-.+.. +.++-.+.--++-
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~--s~~eYv~~Av~La 428 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD--SEEEYVEIAVRLA 428 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S--SHHHHHHHHHHHH
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC--CHHHHHHHHHHHh
Confidence 53 344665 54 467889999999999999999954333333 344555 677765553 6777666666676
Q ss_pred cc
Q 012678 416 VE 417 (458)
Q Consensus 416 ~~ 417 (458)
+|
T Consensus 429 ~D 430 (468)
T PF13844_consen 429 TD 430 (468)
T ss_dssp H-
T ss_pred CC
Confidence 66
No 115
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=0.00068 Score=62.98 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=98.8
Q ss_pred CCcEEEEEcCccccCCHHHHHHHHHHHHh----C-CCceEEEEcCCCCCCCcccCCCchhHHHhhcC--Cccee---ecc
Q 012678 270 AKSVMYVSFGSIVVVNVTEFLEIAWGLAN----S-RVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDG--RGHIV---KWA 339 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~~~~~~~~~~~~al~~----~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~---~~i 339 (458)
.+..|++|+=-..... +.+..+.+++.+ . +..+|..+..+. . +-+-...++.+ |+.+. +|.
T Consensus 203 ~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~--~------v~e~~~~~L~~~~~v~li~pl~~~ 273 (383)
T COG0381 203 DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRP--R------VRELVLKRLKNVERVKLIDPLGYL 273 (383)
T ss_pred cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCCh--h------hhHHHHHHhCCCCcEEEeCCcchH
Confidence 5668998875444433 445555555444 3 334444433321 1 11111233443 35553 778
Q ss_pred ChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccch
Q 012678 340 PQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAE 419 (458)
Q Consensus 340 pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~ 419 (458)
+...++.++.+ ++|-.| |-.-||-..|+|++++=..-+++. +++. |.-+.+ ..+.+.+.+++.+++++
T Consensus 274 ~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v~a--gt~~lv--g~~~~~i~~~~~~ll~~-- 341 (383)
T COG0381 274 DFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GVEA--GTNILV--GTDEENILDAATELLED-- 341 (383)
T ss_pred HHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---ceec--CceEEe--CccHHHHHHHHHHHhhC--
Confidence 88889999998 999988 567899999999999988888877 3332 433333 35789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 420 GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 420 ~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
++..++.+....-+ +..++.+++++.+.
T Consensus 342 -~~~~~~m~~~~npY--------gdg~as~rIv~~l~ 369 (383)
T COG0381 342 -EEFYERMSNAKNPY--------GDGNASERIVEILL 369 (383)
T ss_pred -hHHHHHHhcccCCC--------cCcchHHHHHHHHH
Confidence 66666555544322 23336666666654
No 116
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.98 E-value=0.0015 Score=65.08 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=58.4
Q ss_pred cCCcceeeccChhhhhcCCCccccccc----cCchhHHHHHhhCCcccccccccchhhHHHHHHHH----H-hcceecCC
Q 012678 330 DGRGHIVKWAPQQEVLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHV----W-RVGLHLER 400 (458)
Q Consensus 330 ~~~~~~~~~ipq~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~----~-G~G~~l~~ 400 (458)
.+|+.+.+...-.+++..+++ +|.- |--+++.||+++|+|+|+.. .......+++. + ..|...+.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEECC
Confidence 356677775556678888888 6643 23478999999999999853 34444555541 0 26777665
Q ss_pred cccHHHHHHHHHHHhcc
Q 012678 401 KFERREIETAIRRVTVE 417 (458)
Q Consensus 401 ~~~~~~l~~~i~~ll~~ 417 (458)
.+++++.++|.++++|
T Consensus 427 -~d~~~la~ai~~ll~~ 442 (475)
T cd03813 427 -ADPEALARAILRLLKD 442 (475)
T ss_pred -CCHHHHHHHHHHHhcC
Confidence 6899999999999998
No 117
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.93 E-value=0.00012 Score=71.37 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=94.8
Q ss_pred CCcEEEEEcCccccCCHHHHHHHHHHHHhC-----CCceEEEEcCCCCCCCcccCCCchhHHH-hhcCCcceeeccChhh
Q 012678 270 AKSVMYVSFGSIVVVNVTEFLEIAWGLANS-----RVPFLWVVRPGLVPGVEWLEPLPKGFLE-MLDGRGHIVKWAPQQE 343 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ipq~~ 343 (458)
+++..++++|.... .+.+..+++|+... +..+.|.+-+++.. ...+-+.+.+ ....++.+.+|+++.+
T Consensus 228 ~~~~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~----~~~l~~~~~~~~~~~~V~f~G~v~~~e 301 (407)
T cd04946 228 DDTLRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGGPL----EDTLKELAESKPENISVNFTGELSNSE 301 (407)
T ss_pred CCCEEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCchH----HHHHHHHHHhcCCCceEEEecCCChHH
Confidence 34566777787764 23344455555442 23566665443210 0001111111 1124567789999765
Q ss_pred ---hhcCCCccccccccC----chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhc
Q 012678 344 ---VLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTV 416 (458)
Q Consensus 344 ---ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~ 416 (458)
++..+++.++|...- -++++||+++|+|+|+... ......+.+. +.|..+....+++++.++|.++++
T Consensus 302 ~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~~~~~~~la~~I~~ll~ 376 (407)
T cd04946 302 VYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSKDPTPNELVSSLSKFID 376 (407)
T ss_pred HHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCCCCCHHHHHHHHHHHHh
Confidence 455444434765443 4689999999999998643 3456677763 588877654589999999999998
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 012678 417 EAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLV 452 (458)
Q Consensus 417 ~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 452 (458)
| +..++ ++++..++...+.-+.....++++
T Consensus 377 ~---~~~~~---~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 377 N---EEEYQ---TMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred C---HHHHH---HHHHHHHHHHHHHcCHHHhHHHhc
Confidence 7 33222 233333333334445555555543
No 118
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.92 E-value=0.00041 Score=66.81 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=68.0
Q ss_pred CCcceeeccCh-hhhhcCCCccccccc--cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHH
Q 012678 331 GRGHIVKWAPQ-QEVLAHPAVGGFWTH--NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREI 407 (458)
Q Consensus 331 ~~~~~~~~ipq-~~ll~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 407 (458)
+++.+.++.++ ..++..+++=++.++ |...++.||+++|+|+|+..... .....+++. ..|..++. -+.+++
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-~d~~~l 335 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-GDIEAL 335 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-CcHHHH
Confidence 45566677665 448888888334444 23469999999999999875431 234556663 67887775 689999
Q ss_pred HHHHHHHhccch-hHHHHHHHHHHHHHH
Q 012678 408 ETAIRRVTVEAE-GQEMRERIMHLKEKL 434 (458)
Q Consensus 408 ~~~i~~ll~~~~-~~~~~~~a~~~~~~~ 434 (458)
.++|.++++|.+ ...+.+++++..+++
T Consensus 336 a~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 336 AEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 999999999842 445556665554444
No 119
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=9.6e-05 Score=56.99 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=76.5
Q ss_pred EEEEcCccccCCHHHH--HHHHHHHHhCCCceEEEEcCCCCCCCcccCCCc-hhHHHhhcCCccee--eccC-hhhhhcC
Q 012678 274 MYVSFGSIVVVNVTEF--LEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLP-KGFLEMLDGRGHIV--KWAP-QQEVLAH 347 (458)
Q Consensus 274 i~vs~Gs~~~~~~~~~--~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~--~~ip-q~~ll~~ 347 (458)
||||.||....-.... .++.+-.+....++|..++... . .| .+. ++. ++-+ .+.+.+.
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d------~--kpvagl--------~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD------I--KPVAGL--------RVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC------c--cccccc--------EEEeechHHHHHHHhhc
Confidence 7999999854111111 1122222222457888887643 1 22 111 333 3344 4557777
Q ss_pred CCccccccccCchhHHHHHhhCCccccccccc--------chhhHHHHHHHHHhcceecCC-cc-cHHHHHHHHHHHhc
Q 012678 348 PAVGGFWTHNGWNSTLESICEGVPMICQPCFG--------DQLVNARYVSHVWRVGLHLER-KF-ERREIETAIRRVTV 416 (458)
Q Consensus 348 ~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~~G~G~~l~~-~~-~~~~l~~~i~~ll~ 416 (458)
+++ +|+|+|.||++.++..++|.|++|-.. .|-..|..+.+ ++.=....+ +. -.+.+.....+++.
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spte~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPTELVLQAGLQVSVADVLH 141 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCCchhhHHhHhhhhhhhcC
Confidence 777 999999999999999999999999643 57777877777 576666654 22 34445555555554
No 120
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.76 E-value=7.5e-05 Score=63.19 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=84.3
Q ss_pred CCCcEEEEEcCccccCCHHHHHHHHHHHHhC-----CCceEEEEcCCCCCCCcccCCCchhHHH-hhcCCcceeeccCh-
Q 012678 269 AAKSVMYVSFGSIVVVNVTEFLEIAWGLANS-----RVPFLWVVRPGLVPGVEWLEPLPKGFLE-MLDGRGHIVKWAPQ- 341 (458)
Q Consensus 269 ~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ipq- 341 (458)
.+++.+++..|.... .+.+..+++++... +.-.++.++.... ...+-..+.. ...+++.+.+++++
T Consensus 12 ~~~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (172)
T PF00534_consen 12 PDKKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEY-----KKELKNLIEKLNLKENIIFLGYVPDD 84 (172)
T ss_dssp -TTSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHCCH-----HHHHHHHHHHTTCGTTEEEEESHSHH
T ss_pred CCCCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEccccc-----cccccccccccccccccccccccccc
Confidence 355677777888664 34455555555432 2223344441110 0001111111 23356678899883
Q ss_pred --hhhhcCCCccccccc----cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHh
Q 012678 342 --QEVLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT 415 (458)
Q Consensus 342 --~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll 415 (458)
..++..+++ +|+. |...++.||+++|+|+|+. |...+...+.+. +.|..++. .+.+++.++|.+++
T Consensus 85 ~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~-~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 85 ELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP-NDIEELADAIEKLL 156 (172)
T ss_dssp HHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST-TSHHHHHHHHHHHH
T ss_pred cccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC-CCHHHHHHHHHHHH
Confidence 448888888 8876 5667999999999999975 566667777773 66888886 49999999999999
Q ss_pred cc
Q 012678 416 VE 417 (458)
Q Consensus 416 ~~ 417 (458)
++
T Consensus 157 ~~ 158 (172)
T PF00534_consen 157 ND 158 (172)
T ss_dssp HH
T ss_pred CC
Confidence 98
No 121
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.62 E-value=0.089 Score=52.29 Aligned_cols=114 Identities=19% Similarity=0.124 Sum_probs=70.5
Q ss_pred cCCcceeeccCh-hhhhcCCCccccccc---cC-chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccH
Q 012678 330 DGRGHIVKWAPQ-QEVLAHPAVGGFWTH---NG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFER 404 (458)
Q Consensus 330 ~~~~~~~~~ipq-~~ll~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 404 (458)
.+++.+.+|..+ ..+|..+++ ||.. -| -+++.||+++|+|+|+... ..+...+.+. ..|..++. -++
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~-~D~ 525 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD-AQT 525 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC-CCh
Confidence 366778888654 447888998 8853 45 4799999999999997754 3456777774 67887775 344
Q ss_pred HHHHHHH---HHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 405 REIETAI---RRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 405 ~~l~~~i---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
+.+.+++ .++.+. .. ....+++..++-..+.-+.+..+++..+.+.+
T Consensus 526 ~aLa~ai~lA~aL~~l---l~---~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 526 VNLDQACRYAEKLVNL---WR---SRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred hhHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 4454444 222222 11 11122222222223456788888888877765
No 122
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.54 E-value=0.099 Score=50.87 Aligned_cols=177 Identities=10% Similarity=0.156 Sum_probs=100.5
Q ss_pred hhhccCCCCcEEEEEcCccccC------C----HHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCC--CchhHHHhhc
Q 012678 263 SWLDKQAAKSVMYVSFGSIVVV------N----VTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEP--LPKGFLEMLD 330 (458)
Q Consensus 263 ~~l~~~~~~~~i~vs~Gs~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~--l~~~~~~~~~ 330 (458)
.|+...+.+++|.++....... . .+.+..+++.+.+.++++++.-.-..... ...+. ....+.+.++
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~-~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDS-YNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccC-CCCchHHHHHHHHHhcc
Confidence 4554434567888886654311 1 22334455555556888776542111000 00000 1123334433
Q ss_pred C--Cccee--eccChh--hhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhccee-cCC-cc
Q 012678 331 G--RGHIV--KWAPQQ--EVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLH-LER-KF 402 (458)
Q Consensus 331 ~--~~~~~--~~ipq~--~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-l~~-~~ 402 (458)
. +..++ ++-|.. .++++|++ +|. .=+-++.-|+..|||.+.++- | +.....++. +|.... .+. ++
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig-~RlHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~~~l 377 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVG-TRLHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDIRHL 377 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEE-ecchHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEechhhC
Confidence 2 22332 333433 68888887 885 345577788999999999985 4 444444566 688755 454 78
Q ss_pred cHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 403 ERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 403 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
+.++|.+.+.++++|. +.+++..++.-++.+. .....+.++++.|
T Consensus 378 ~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~ 422 (426)
T PRK10017 378 LDGSLQAMVADTLGQL--PALNARLAEAVSRERQ------TGMQMVQSVLERI 422 (426)
T ss_pred CHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 9999999999999985 5555555555554442 2344555555554
No 123
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.53 E-value=0.0078 Score=52.94 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=35.2
Q ss_pred CCcceeeccCh----hhhhcCCCccccccccC----chhHHHHHhhCCcccccccccc
Q 012678 331 GRGHIVKWAPQ----QEVLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGD 380 (458)
Q Consensus 331 ~~~~~~~~ipq----~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~D 380 (458)
.|+.+.+++++ ..++..+++ +|+-.. .+++.||+++|+|+|+.+..+.
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 45577777632 224444787 887776 6899999999999999887653
No 124
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.52 E-value=0.065 Score=48.27 Aligned_cols=115 Identities=18% Similarity=0.117 Sum_probs=70.0
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCC-CCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhc
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSP-NPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKC 93 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (458)
|||.|--. -.-|+.-+-.|.++|.++||+|.+.+-++..- ..-..-|+.+..+..- + ...+.+.+.....+
T Consensus 1 mkVwiDI~-n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~---g---~~tl~~Kl~~~~eR- 72 (346)
T COG1817 1 MKVWIDIG-NPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKH---G---GVTLKEKLLESAER- 72 (346)
T ss_pred CeEEEEcC-CcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeeccc---C---CccHHHHHHHHHHH-
Confidence 34444333 33688889999999999999998887653321 1111135666666531 1 01122111111111
Q ss_pred ChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchHH
Q 012678 94 VVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSIS 146 (458)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 146 (458)
.-.+.++..+ ++||+.+. ..++.+..+|.-+|+|.+++.-....
T Consensus 73 ----~~~L~ki~~~----~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 73 ----VYKLSKIIAE----FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred ----HHHHHHHHhh----cCCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 1134444444 78999999 66888999999999999998766443
No 125
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.42 E-value=0.011 Score=55.51 Aligned_cols=131 Identities=11% Similarity=0.040 Sum_probs=75.7
Q ss_pred CCcEEEEEcCcccc---CCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeec--cCh-hh
Q 012678 270 AKSVMYVSFGSIVV---VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKW--APQ-QE 343 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--ipq-~~ 343 (458)
+++.|.+..|+... .+.+.+.++++.+.+.++++++..++.. ..+..+.+.+..+. ..+.+- +++ .+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~------e~~~~~~i~~~~~~-~~l~g~~sL~el~a 250 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA------EKQRAERIAEALPG-AVVLPKMSLAEVAA 250 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH------HHHHHHHHHhhCCC-CeecCCCCHHHHHH
Confidence 45566666665333 6788888899888766777766544321 11122233222221 123332 333 45
Q ss_pred hhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcce-ec--C-C-cccHHHHHHHHHHHh
Q 012678 344 VLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGL-HL--E-R-KFERREIETAIRRVT 415 (458)
Q Consensus 344 ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~-~l--~-~-~~~~~~l~~~i~~ll 415 (458)
++++|++ +|+ +-.|.++=|.+.|+|+|.+ ++ +.+..+..= +|-.. .+ . . .++++++.+++.++|
T Consensus 251 li~~a~l--~I~-~DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 251 LLAGADA--VVG-VDTGLTHLAAALDKPTVTL--YG--ATDPGRTGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHcCCE--EEe-CCChHHHHHHHcCCCEEEE--EC--CCCHhhccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 8899999 998 4568899999999999976 22 111111110 11110 01 1 2 689999999998875
No 126
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.35 E-value=0.0011 Score=62.73 Aligned_cols=109 Identities=19% Similarity=0.334 Sum_probs=78.6
Q ss_pred CCcceeeccChhhh---hcCCCcccccccc-------Cc------hhHHHHHhhCCcccccccccchhhHHHHHHHHHhc
Q 012678 331 GRGHIVKWAPQQEV---LAHPAVGGFWTHN-------GW------NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRV 394 (458)
Q Consensus 331 ~~~~~~~~ipq~~l---l~~~~~~~~I~Hg-------G~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~ 394 (458)
+|+.+.+|+|+.++ |.. +.+++...- .+ +-+.++|++|+|+|+. ++...+..|++. ++
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~~ 280 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-GL 280 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-Cc
Confidence 45688999998775 333 433333211 11 2377789999999985 556788999995 99
Q ss_pred ceecCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 012678 395 GLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVD 453 (458)
Q Consensus 395 G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~ 453 (458)
|..++ +.+++.+++.++. +++...|++++++++++++ .|.-..+++++++.
T Consensus 281 G~~v~---~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~ 331 (333)
T PRK09814 281 GFVVD---SLEELPEIIDNIT-EEEYQEMVENVKKISKLLR----NGYFTKKALVDAIK 331 (333)
T ss_pred eEEeC---CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHh
Confidence 99987 5578999998864 3345789999999999998 56666666666654
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.33 E-value=0.00043 Score=55.85 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=50.2
Q ss_pred cCCcceeeccCh-hhhhcCCCccccccc--cC-chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHH
Q 012678 330 DGRGHIVKWAPQ-QEVLAHPAVGGFWTH--NG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 405 (458)
Q Consensus 330 ~~~~~~~~~ipq-~~ll~~~~~~~~I~H--gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 405 (458)
.+|+.+.+|++. .+++..+++.+..+. .| -+++.|++++|+|+|+.+. ......+.. +.|..+. -+++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~~--~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLVA--NDPE 123 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-T--T-HH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEEC--CCHH
Confidence 357788899874 458899999555442 23 4899999999999999765 123344443 7887773 4999
Q ss_pred HHHHHHHHHhcc
Q 012678 406 EIETAIRRVTVE 417 (458)
Q Consensus 406 ~l~~~i~~ll~~ 417 (458)
++.++|.++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 128
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.23 E-value=0.0042 Score=60.56 Aligned_cols=137 Identities=19% Similarity=0.244 Sum_probs=87.6
Q ss_pred CCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHh------hcCCcceeeccChh
Q 012678 269 AAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEM------LDGRGHIVKWAPQQ 342 (458)
Q Consensus 269 ~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~ipq~ 342 (458)
+++.+||.+|--..-..++.++..++-|++.+..++|.....-.+. .+|... .++++++.+-++..
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--------~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--------QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--------HHHHHHHHHhCCCccceeeccccchH
Confidence 4677999999877778999999999999999999999987654222 222111 11333444443322
Q ss_pred h-----hhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHH-HHHHHHhcceecCCcccHHHHHHHHHHHhc
Q 012678 343 E-----VLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNAR-YVSHVWRVGLHLERKFERREIETAIRRVTV 416 (458)
Q Consensus 343 ~-----ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~-~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~ 416 (458)
+ .|..-.++-..| .|+.|.++.|+.|||||.+|.-.--...|. .+.. +|+|..+.+ +.++-.+.--++=+
T Consensus 828 eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak--~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK--NREEYVQIAVRLAT 903 (966)
T ss_pred HHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh--hHHHHHHHHHHhhc
Confidence 2 222222233555 578899999999999999998765555553 3445 688886554 44444444444444
Q ss_pred c
Q 012678 417 E 417 (458)
Q Consensus 417 ~ 417 (458)
|
T Consensus 904 d 904 (966)
T KOG4626|consen 904 D 904 (966)
T ss_pred C
Confidence 4
No 129
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=97.16 E-value=0.00056 Score=51.02 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=50.7
Q ss_pred cccchhhccCCCCcEEEEEcCccccC---CH--HHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhH
Q 012678 259 QSCISWLDKQAAKSVMYVSFGSIVVV---NV--TEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGF 325 (458)
Q Consensus 259 ~~~~~~l~~~~~~~~i~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~ 325 (458)
..+.+|+...++++.|++|+||.... .. ..+..++++++..+..+|.++....... ++.+|+|+
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~---lg~lP~nV 96 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAE---LGELPDNV 96 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGG---CCS-TTTE
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHh---hCCCCCCC
Confidence 44788999989999999999999873 22 4688899999999999999998765432 56677764
No 130
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.94 E-value=0.1 Score=49.68 Aligned_cols=103 Identities=10% Similarity=0.018 Sum_probs=70.5
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCceEE-ecCCCCCCCccCcccHHHHHHHHHH
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFSFN-SISESLWESEVSTENAISLLTVLND 91 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (458)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+......+..+.+.-+ .++.. .. ... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~--~~---~~~----~----- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG--HG---ALE----I----- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccc--cc---hhh----h-----
Confidence 789999999999999999999999996 9999999987655555544555433 22211 00 000 0
Q ss_pred hcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEE
Q 012678 92 KCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIV 139 (458)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 139 (458)
.....++.++.+ .++|++|.=....-...++...|+|.-+
T Consensus 67 ---~~~~~l~~~lr~-----~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ---GERRRLGHSLRE-----KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---HHHHHHHHHHHh-----cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 112234455555 6899999776566666777888888665
No 131
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.72 E-value=0.2 Score=47.73 Aligned_cols=108 Identities=13% Similarity=0.129 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCceE-EecCCCCCCCccCcccHHHHHHHH
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFSF-NSISESLWESEVSTENAISLLTVL 89 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 89 (458)
..+||+++-..+.|++.-+.++.+.|+++ +.+|++++.+...+..+..+.+.- +.++.. . ......+.
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~--~-----~~~~~~~~-- 74 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNK--K-----AGASEKIK-- 74 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccc--c-----ccHHHHHH--
Confidence 45799999999999999999999999998 999999998765555554455543 223211 0 00000011
Q ss_pred HHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEE
Q 012678 90 NDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVL 140 (458)
Q Consensus 90 ~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 140 (458)
.+..++.++.+ .++|++|.-........++...|.|..+-
T Consensus 75 ------~~~~l~~~lr~-----~~yD~vidl~~~~~s~ll~~l~~a~~rig 114 (352)
T PRK10422 75 ------NFFSLIKVLRA-----NKYDLIVNLTDQWMVALLVRLLNARVKIS 114 (352)
T ss_pred ------HHHHHHHHHhh-----CCCCEEEEcccchHHHHHHHHhCCCeEEe
Confidence 12234455554 68999997655555566777778887653
No 132
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.70 E-value=0.024 Score=45.82 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=63.6
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhcCh
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVV 95 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (458)
||++++.....| ...+++.|.++||+|++++............++.+..++... ......+. +
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~-------k~~~~~~~-~------ 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPR-------KSPLNYIK-Y------ 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCC-------CccHHHHH-H------
Confidence 577777766555 568899999999999999995443333334678887775321 11111221 1
Q ss_pred hHHHHHHHHhhCCCCCCCeeEEEecCchh---hHHHHHHHcC-CCeEEEecc
Q 012678 96 PFQDCLAKLISNGDQEEPVTCLITDAIWH---FAQTVADTLR-LPRIVLRTS 143 (458)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~pDlvI~D~~~~---~~~~~A~~lg-iP~v~~~~~ 143 (458)
. .+.++.+. .+||+|.+..... .+..++...+ +|.|....+
T Consensus 64 --~-~l~k~ik~----~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 64 --F-RLRKIIKK----EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred --H-HHHHHhcc----CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecC
Confidence 1 22333333 6899997766443 3444667788 888875554
No 133
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.55 E-value=0.29 Score=46.31 Aligned_cols=108 Identities=16% Similarity=0.040 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHH
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLND 91 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (458)
.|||+++-..+.|++.-.+++-..|+++ +.+++|++++...+..+..+.+.-+-.-... . .. ..+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~~--~----~~--~~~----- 67 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDKK--K----KG--LGL----- 67 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhcccccc--c----cc--cch-----
Confidence 3799999999999999999999999998 6999999997555444433333322111100 0 00 001
Q ss_pred hcChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEec
Q 012678 92 KCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRT 142 (458)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~ 142 (458)
.....+...+.+ .++|+||.=...+-...++...++|.-.-.-
T Consensus 68 ---~~~~~l~~~lr~-----~~yD~vidl~~~~ksa~l~~~~~~~~r~g~~ 110 (334)
T COG0859 68 ---KERLALLRTLRK-----ERYDAVIDLQGLLKSALLALLLGIPFRIGFD 110 (334)
T ss_pred ---HHHHHHHHHhhc-----cCCCEEEECcccHHHHHHHHHhCCCcccccc
Confidence 112224444443 5799999888777777788888888776433
No 134
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.47 E-value=0.25 Score=46.93 Aligned_cols=106 Identities=12% Similarity=0.079 Sum_probs=70.3
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCce-EEecCCCCCCCccCcccHHHHHHHHHHh
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFS-FNSISESLWESEVSTENAISLLTVLNDK 92 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (458)
||+++-..+.|++.-+.++.+.|+++ +.+|++++.+.+....+..+.+. ++.++.... ..... .+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~------~~~~~---~~--- 68 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKA------KAGER---KL--- 68 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhh------cchHH---HH---
Confidence 68999999999999999999999997 89999999976655555445554 333332110 00000 00
Q ss_pred cChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEE
Q 012678 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVL 140 (458)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 140 (458)
.....++..+.+ .++|++|.-........++...|+|.-+-
T Consensus 69 --~~~~~l~~~lr~-----~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 69 --ANQFHLIKVLRA-----NRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred --HHHHHHHHHHHh-----CCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 011224455544 68999997655566778888889997653
No 135
>PHA01633 putative glycosyl transferase group 1
Probab=96.46 E-value=0.012 Score=55.14 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=55.2
Q ss_pred CCccee---eccChh---hhhcCCCcccccccc---C-chhHHHHHhhCCccccccc------ccch------hhHHHHH
Q 012678 331 GRGHIV---KWAPQQ---EVLAHPAVGGFWTHN---G-WNSTLESICEGVPMICQPC------FGDQ------LVNARYV 388 (458)
Q Consensus 331 ~~~~~~---~~ipq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~------~~DQ------~~na~~v 388 (458)
+++.+. +++++. +++..+++ ||.-+ | ..++.||+++|+|+|+.-. .+|+ .++..-.
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 455776 455654 47788888 88642 4 4689999999999998743 2332 2333222
Q ss_pred H--HHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 389 S--HVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 389 ~--~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
. .. |.|..++. .++++++++|.++++.
T Consensus 279 ~~~~~-g~g~~~~~-~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 279 YDKEH-GQKWKIHK-FQIEDMANAIILAFEL 307 (335)
T ss_pred cCccc-CceeeecC-CCHHHHHHHHHHHHhc
Confidence 2 32 66666664 8999999999999544
No 136
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.45 E-value=0.16 Score=48.08 Aligned_cols=102 Identities=11% Similarity=0.066 Sum_probs=67.2
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCceEE-ecCCCCCCCccCcccHHHHHHHHHHh
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFSFN-SISESLWESEVSTENAISLLTVLNDK 92 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (458)
||+++-..+.|++.-..++.+.|++. +.+|++++.+......+..+.+.-+ .++.. .. ... .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~--~~---~~~---~------- 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLG--HG---ALE---L------- 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCc--cc---chh---h-------
Confidence 68999999999999999999999997 9999999987554444444444322 22211 00 000 0
Q ss_pred cChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEE
Q 012678 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIV 139 (458)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 139 (458)
.....++.++.+ .++|++|.-........++...|+|.-+
T Consensus 66 --~~~~~~~~~lr~-----~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 66 --TERRRLGRSLRE-----ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred --hHHHHHHHHHhh-----cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 011234455554 5899999876666666777777888654
No 137
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.061 Score=52.52 Aligned_cols=105 Identities=14% Similarity=0.227 Sum_probs=76.4
Q ss_pred CCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhc------CCcceeeccCh-
Q 012678 269 AAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD------GRGHIVKWAPQ- 341 (458)
Q Consensus 269 ~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~ipq- 341 (458)
+++.+||+||+...-..++.+...++-|+..+.-++|..+++..+ .+..++++... ++.++.+-.|.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~------~~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDA------EINARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcH------HHHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 467899999999888999999999999999999999998874311 12233332222 34455565554
Q ss_pred --hhhhcCCCcccccc---ccCchhHHHHHhhCCcccccccccchhh
Q 012678 342 --QEVLAHPAVGGFWT---HNGWNSTLESICEGVPMICQPCFGDQLV 383 (458)
Q Consensus 342 --~~ll~~~~~~~~I~---HgG~~s~~eal~~GvP~l~~P~~~DQ~~ 383 (458)
.+-+.-+++ |+- =||+.|..|+|+.|||+|..+ |+||-
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~Fa 543 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFA 543 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHH
Confidence 334455666 764 599999999999999999885 77763
No 138
>PRK14098 glycogen synthase; Provisional
Probab=96.29 E-value=0.037 Score=55.24 Aligned_cols=165 Identities=9% Similarity=-0.020 Sum_probs=90.0
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHh---CCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChh---hh
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLAN---SRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQ---EV 344 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~---~l 344 (458)
+..++...|.... .+.+..+++|+.. .+.++++.-.+.. . ....-....++.++++.+..+++.. .+
T Consensus 306 ~~~~i~~vgRl~~--~KG~d~li~a~~~l~~~~~~lvivG~G~~----~-~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~ 378 (489)
T PRK14098 306 ETPLVGVIINFDD--FQGAELLAESLEKLVELDIQLVICGSGDK----E-YEKRFQDFAEEHPEQVSVQTEFTDAFFHLA 378 (489)
T ss_pred CCCEEEEeccccc--cCcHHHHHHHHHHHHhcCcEEEEEeCCCH----H-HHHHHHHHHHHCCCCEEEEEecCHHHHHHH
Confidence 3455666676664 2334444444443 3445444332211 0 0000112222334667778888864 57
Q ss_pred hcCCCcccccccc---Cc-hhHHHHHhhCCccccccccc--chhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHh---
Q 012678 345 LAHPAVGGFWTHN---GW-NSTLESICEGVPMICQPCFG--DQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT--- 415 (458)
Q Consensus 345 l~~~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll--- 415 (458)
++.+++ ++.-. |. .+.+||+++|+|.|+....+ |... ...++. +.|...+. .+++++.++|.+++
T Consensus 379 ~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~-~~G~l~~~-~d~~~la~ai~~~l~~~ 452 (489)
T PRK14098 379 IAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDK-GSGFIFHD-YTPEALVAKLGEALALY 452 (489)
T ss_pred HHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCC-CceeEeCC-CCHHHHHHHHHHHHHHH
Confidence 888888 77543 22 47889999999888876543 2211 111223 67777765 67999999999876
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 416 VEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 416 ~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
++ +... ++++. +++...=|-.+.+++.++..++
T Consensus 453 ~~---~~~~---~~~~~---~~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 453 HD---EERW---EELVL---EAMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred cC---HHHH---HHHHH---HHhcCCCChHHHHHHHHHHHHH
Confidence 34 2211 12221 2222455667777777766554
No 139
>PHA01630 putative group 1 glycosyl transferase
Probab=96.29 E-value=0.14 Score=48.19 Aligned_cols=113 Identities=9% Similarity=0.080 Sum_probs=65.6
Q ss_pred eccChhh---hhcCCCcccccc---ccC-chhHHHHHhhCCccccccccc--chhhH---HHHHHHH----------Hhc
Q 012678 337 KWAPQQE---VLAHPAVGGFWT---HNG-WNSTLESICEGVPMICQPCFG--DQLVN---ARYVSHV----------WRV 394 (458)
Q Consensus 337 ~~ipq~~---ll~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~--DQ~~n---a~~v~~~----------~G~ 394 (458)
.++|+.+ ++..+++ +|. ..| ..++.||+++|+|+|+.-..+ |...+ +-.+... .++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 3466544 6888888 663 233 468999999999999986543 32211 1111100 024
Q ss_pred ceecCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 395 GLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 395 G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
|..+.. +.+++.+++.+++.|.+.+..++....-+.... +.-+-.+.++++.+.+++
T Consensus 274 G~~v~~--~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 274 GYFLDP--DIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccccCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhc
Confidence 554443 678888888888876211233333333333232 445677778888877764
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.23 E-value=0.17 Score=46.43 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=64.5
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCceEE-ecCCCCCCCccCcccHHHHHHHHHHh
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFSFN-SISESLWESEVSTENAISLLTVLNDK 92 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (458)
||+++-..+.|++.-+.++.++|+++ +-+|++++.+......+..+.+.-+ .++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~-----~~~~~---------- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH-----GKLGL---------- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcc-----cccch----------
Confidence 68899999999999999999999997 4899999997554444443444332 222110 00000
Q ss_pred cChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEE
Q 012678 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIV 139 (458)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 139 (458)
..+..++.++.+ .++|+++.-........++...+++...
T Consensus 66 --~~~~~~~~~l~~-----~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 --GARRRLARALRR-----RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred --HHHHHHHHHHhh-----cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 112234555554 5799999776555444555666666544
No 141
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.13 E-value=0.056 Score=45.04 Aligned_cols=96 Identities=10% Similarity=0.075 Sum_probs=57.6
Q ss_pred hCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEe
Q 012678 40 SKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLIT 119 (458)
Q Consensus 40 ~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~ 119 (458)
++||+|++++....... . +|++...+...-.... ........++...... ..+...+.+|.+. + +.||+||.
T Consensus 1 q~gh~v~fl~~~~~~~~-~--~GV~~~~y~~~~~~~~-~~~~~~~~~e~~~~rg-~av~~a~~~L~~~-G--f~PDvI~~ 72 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPI-P--PGVRVVRYRPPRGPTP-GTHPYVRDFEAAVLRG-QAVARAARQLRAQ-G--FVPDVIIA 72 (171)
T ss_pred CCCCEEEEEecCCCCCC-C--CCcEEEEeCCCCCCCC-CCCcccccHHHHHHHH-HHHHHHHHHHHHc-C--CCCCEEEE
Confidence 58999999996433222 2 5788887764111110 0111111121111111 2344456666665 3 88999999
Q ss_pred cCchhhHHHHHHHc-CCCeEEEecc
Q 012678 120 DAIWHFAQTVADTL-RLPRIVLRTS 143 (458)
Q Consensus 120 D~~~~~~~~~A~~l-giP~v~~~~~ 143 (458)
....-.++.+-+.+ ++|.+.+.-.
T Consensus 73 H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 73 HPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred cCCcchhhhHHHhCCCCcEEEEEEE
Confidence 99887788899999 9999887555
No 142
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.05 E-value=0.23 Score=46.75 Aligned_cols=132 Identities=11% Similarity=-0.044 Sum_probs=74.5
Q ss_pred CcEEE-EEcCcccc--CCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeec--cCh-hhh
Q 012678 271 KSVMY-VSFGSIVV--VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKW--APQ-QEV 344 (458)
Q Consensus 271 ~~~i~-vs~Gs~~~--~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--ipq-~~l 344 (458)
++.|. +-.||... .+.+.+.++++.+.+.+.++++..++.. ..+..+.+.+.. .++.+.+- +.+ ..+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~------e~~~~~~i~~~~-~~~~l~g~~sL~elaal 250 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH------EEQRAKRLAEGF-PYVEVLPKLSLEQVARV 250 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH------HHHHHHHHHccC-CcceecCCCCHHHHHHH
Confidence 34554 44444332 6788888999888776777665444321 111122222211 12223322 333 448
Q ss_pred hcCCCccccccccCchhHHHHHhhCCcccccccccchhhHH------HHHHHHHhcceecCCcccHHHHHHHHHHHhc
Q 012678 345 LAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNA------RYVSHVWRVGLHLERKFERREIETAIRRVTV 416 (458)
Q Consensus 345 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na------~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~ 416 (458)
+.+|++ +|+. -.|.++=|.+.|+|+|.+=-..|...++ ..+.- .+..+. .++++++.++++++|+
T Consensus 251 i~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~---~~~cm~-~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 251 LAGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRS---PGKSMA-DLSAETVFQKLETLIS 321 (322)
T ss_pred HHhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecC---CCcccc-cCCHHHHHHHHHHHhh
Confidence 899999 9984 4588999999999999873222221111 11110 111222 5899999999988874
No 143
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.88 E-value=0.052 Score=40.25 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=52.1
Q ss_pred ccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHh-cceecCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 012678 356 HNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWR-VGLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKL 434 (458)
Q Consensus 356 HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~ 434 (458)
+|-...+.|++++|+|+|.-.. ......+.. | -++.. . +.+++.++|..+++|+ +..++.+++..+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~--~-~~~el~~~i~~ll~~~--~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY--N-DPEELAEKIEYLLENP--EERRRIAKNARERV 77 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE--C-CHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH
Confidence 5556789999999999998764 233333322 3 22222 2 8999999999999983 33344444444444
Q ss_pred HHHHhhCCChHHHHHHHH
Q 012678 435 ELSLLEAGSSYQSLERLV 452 (458)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~ 452 (458)
+ ..-+..+.++.++
T Consensus 78 ~----~~~t~~~~~~~il 91 (92)
T PF13524_consen 78 L----KRHTWEHRAEQIL 91 (92)
T ss_pred H----HhCCHHHHHHHHH
Confidence 4 4556666666654
No 144
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.69 E-value=0.35 Score=44.96 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=32.9
Q ss_pred cChhhhhcCCCccccccccCchhHHHHHhhCCccccccccc
Q 012678 339 APQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFG 379 (458)
Q Consensus 339 ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 379 (458)
=|+..+|..++. ++||--..+-+.||+..|+|+.++|+..
T Consensus 220 nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 220 NPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 367788888886 3566666799999999999999999987
No 145
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.52 E-value=0.19 Score=43.07 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=62.5
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC----CCCceEEecCCCC-CCC---ccCcccHHHHH
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN----YPHFSFNSISESL-WES---EVSTENAISLL 86 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~---~~~~~~~~~~~ 86 (458)
||||+..-.+. +---+..|+++|.+.||+|+++.|..+..-... ...++........ +.+ ..-...+..-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 78888887776 556688999999877899999999765543321 1223332221110 001 01111111111
Q ss_pred HHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecC----------c---hhhHHHHHHHcCCCeEEEecc
Q 012678 87 TVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDA----------I---WHFAQTVADTLRLPRIVLRTS 143 (458)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 143 (458)
. -.+..++.. .+||+||+.. + +.+++.-|...|||.|.++..
T Consensus 80 ~-----------~al~~~~~~----~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 80 K-----------LALDGLLPD----KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp H-----------HHHHCTSTT----SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred H-----------HHHHhhhcc----CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 1 122333321 3599999642 1 255667778889999998777
No 146
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.48 E-value=0.034 Score=45.78 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCCCCCC-CCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhcChhHHHHHHHHhhCC
Q 012678 30 PMLQLASILYSKGFSITIIHTNFNSPNP-SNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDCLAKLISNG 108 (458)
Q Consensus 30 p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 108 (458)
-+..|+++|.++||+|+++++....... ....++.+..++-...... ......+ ..+...+ .. ..
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~l-~~-~~- 71 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWP---LRLLRFL--------RRLRRLL-AA-RR- 71 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSG---GGHCCHH--------HHHHHHC-HH-CT-
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchh---hhhHHHH--------HHHHHHH-hh-hc-
Confidence 4678999999999999999975333221 1224677776662211110 0000111 1111222 11 22
Q ss_pred CCCCCeeEEEecCch-hhHHHHHH-HcCCCeEEEecc
Q 012678 109 DQEEPVTCLITDAIW-HFAQTVAD-TLRLPRIVLRTS 143 (458)
Q Consensus 109 ~~~~~pDlvI~D~~~-~~~~~~A~-~lgiP~v~~~~~ 143 (458)
.+||+|.+.... .....++. ..++|+|.....
T Consensus 72 ---~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 72 ---ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp ------SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred ---cCCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 689999877643 22233444 789999986654
No 147
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=95.21 E-value=0.59 Score=41.82 Aligned_cols=115 Identities=10% Similarity=0.078 Sum_probs=64.2
Q ss_pred cCCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC----CCCceEEecCCC-CCCCccCcccHHHH
Q 012678 11 QKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN----YPHFSFNSISES-LWESEVSTENAISL 85 (458)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~ 85 (458)
+.++||||+..-.+. |---+..|+++|.+.| +|+++.|..+..-... ...+++..+... -...+.-...+..-
T Consensus 2 ~~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDC 79 (257)
T PRK13932 2 QDKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDC 79 (257)
T ss_pred CCCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHH
Confidence 456799998877664 3345788999998888 7999988754433221 112333333210 00001111111111
Q ss_pred HHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecC-------------chhhHHHHHHHcCCCeEEEecc
Q 012678 86 LTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDA-------------IWHFAQTVADTLRLPRIVLRTS 143 (458)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~-------------~~~~~~~~A~~lgiP~v~~~~~ 143 (458)
+.-.+..+.. .+||+||+.. .+.+|+.-|..+|||.|.++..
T Consensus 80 -----------V~lal~~~~~-----~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 80 -----------IKVALSHILP-----EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred -----------HHHHHHhhcC-----CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 1112333332 4699998643 2356677788889999998763
No 148
>PLN02939 transferase, transferring glycosyl groups
Probab=94.19 E-value=1 Score=47.77 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=54.6
Q ss_pred CCcceeeccChh---hhhcCCCcccccccc---C-chhHHHHHhhCCccccccccc--chhhH--HHHH-HHHHhcceec
Q 012678 331 GRGHIVKWAPQQ---EVLAHPAVGGFWTHN---G-WNSTLESICEGVPMICQPCFG--DQLVN--ARYV-SHVWRVGLHL 398 (458)
Q Consensus 331 ~~~~~~~~ipq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~~v-~~~~G~G~~l 398 (458)
+++.+..+.+.. .+++.+++ ||.-. | ..+.+||+++|+|.|+....+ |...+ ...+ +.. +-|...
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTF 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEe
Confidence 456777877764 47888888 88532 2 358999999999998876654 32211 1111 121 457666
Q ss_pred CCcccHHHHHHHHHHHhc
Q 012678 399 ERKFERREIETAIRRVTV 416 (458)
Q Consensus 399 ~~~~~~~~l~~~i~~ll~ 416 (458)
.. .+++++.++|.++++
T Consensus 914 ~~-~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT-PDEQGLNSALERAFN 930 (977)
T ss_pred cC-CCHHHHHHHHHHHHH
Confidence 65 588889999988774
No 149
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.93 E-value=0.41 Score=39.91 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=23.3
Q ss_pred CcCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 25 QGHINPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 25 ~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
.|--.-+..|+++|+++||+|+++++...
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 36667789999999999999999988633
No 150
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.91 E-value=0.27 Score=41.23 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=57.9
Q ss_pred EEEcCCCCcCHHHHHHHHHHH-HhC-CCEEEEEeCCCCCCCC--C---C--CCCceEEecCCCCCCCccCcccHHHHHHH
Q 012678 18 ILFPLPLQGHINPMLQLASIL-YSK-GFSITIIHTNFNSPNP--S---N--YPHFSFNSISESLWESEVSTENAISLLTV 88 (458)
Q Consensus 18 l~~~~~~~GH~~p~l~La~~L-~~r-Gh~Vt~~~~~~~~~~~--~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (458)
+++. ++.||+.-|+.|.+.+ .++ .++..+++........ . + .....+..+|................+..
T Consensus 2 l~v~-gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~ 80 (170)
T PF08660_consen 2 LVVL-GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLRA 80 (170)
T ss_pred EEEE-cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHHH
Confidence 4444 4449999999999999 444 5665566554322111 0 0 00012333332111010000111111111
Q ss_pred HHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCch--hhHHHHHHHc------CCCeEEEecc
Q 012678 89 LNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIW--HFAQTVADTL------RLPRIVLRTS 143 (458)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~--~~~~~~A~~l------giP~v~~~~~ 143 (458)
+...+.-+.+ .+||+||+..-. .....+|..+ |.+.|.+-+.
T Consensus 81 --------~~~~~~il~r-----~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 81 --------FLQSLRILRR-----ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred --------HHHHHHHHHH-----hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 1122233333 589999988744 5556788888 9999987666
No 151
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=92.11 E-value=3.9 Score=36.51 Aligned_cols=110 Identities=12% Similarity=0.058 Sum_probs=59.9
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC----CCCceEEecCC--CCCCCccCcccHHHHHHH
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN----YPHFSFNSISE--SLWESEVSTENAISLLTV 88 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 88 (458)
||||+.-=-+ =|---+..|+++|.+.| +|+++.|..+..-... ...+++..++. +. ..+.-...+..
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~-~~~~v~GTPaD---- 73 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGA-HIYAVDGTPTD---- 73 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCc-cEEEEcCcHHH----
Confidence 6777665555 23345788999999888 8999998755433221 12233333321 10 00110111111
Q ss_pred HHHhcChhHHHHHHHHhhCCCCCCCeeEEEecC-------------chhhHHHHHHHcCCCeEEEecc
Q 012678 89 LNDKCVVPFQDCLAKLISNGDQEEPVTCLITDA-------------IWHFAQTVADTLRLPRIVLRTS 143 (458)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~-------------~~~~~~~~A~~lgiP~v~~~~~ 143 (458)
.+.-.+..+.. .+||+||+.. .+.+++.-|..+|||.+.++..
T Consensus 74 -------cv~~gl~~l~~-----~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 74 -------CVILGINELMP-----EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred -------HHHHHHHHhcc-----CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 11112233332 4689998643 2356677788889999998754
No 152
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=91.96 E-value=1.2 Score=39.46 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=62.3
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCC----CCceEEecCCCCCCCccCcccHHHHHHHHH
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNY----PHFSFNSISESLWESEVSTENAISLLTVLN 90 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (458)
||||+.-=-+ =|---+..|++.|. .+++|+++.|..+..-.+.. ..++...+.. ..+.-...+.
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~---~~~av~GTPa------- 68 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDN---GAYAVNGTPA------- 68 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEecc---ceEEecCChH-------
Confidence 6777666555 35555778888888 99999999998655443320 1122222211 0000001111
Q ss_pred HhcChhHHHHHHHHhhCCCCCCCeeEEEecC-------------chhhHHHHHHHcCCCeEEEecc
Q 012678 91 DKCVVPFQDCLAKLISNGDQEEPVTCLITDA-------------IWHFAQTVADTLRLPRIVLRTS 143 (458)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~-------------~~~~~~~~A~~lgiP~v~~~~~ 143 (458)
.++.-.+..+.++ .+||+||+.. .+.+|+.=|..+|||.|.++..
T Consensus 69 ----DCV~lal~~l~~~----~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 69 ----DCVILGLNELLKE----PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ----HHHHHHHHHhccC----CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 1222244555542 4589998642 2466677788899999998776
No 153
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.95 E-value=1.2 Score=43.96 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=69.5
Q ss_pred eccChhh---hhcCCCcccccc---ccCc-hhHHHHHhhCCc----ccccccccchhhHHHHHHHHHhcceecCCcccHH
Q 012678 337 KWAPQQE---VLAHPAVGGFWT---HNGW-NSTLESICEGVP----MICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 405 (458)
Q Consensus 337 ~~ipq~~---ll~~~~~~~~I~---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 405 (458)
..+|+.+ ++..+++ ++. +=|+ .+..||+++|+| +|+--+.+- +.. ++-|+.++. .+++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~----l~~gllVnP-~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQE----LNGALLVNP-YDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHH----hCCcEEECC-CCHH
Confidence 4556655 5778888 875 3475 478899999999 555544432 222 233666665 6899
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 406 EIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 406 ~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
+++++|.++++... +..+++.+++++.+. .-+...-++.+++.+.+
T Consensus 411 ~lA~aI~~aL~~~~-~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 411 GMADAIARALTMPL-EEREERHRAMMDKLR-----KNDVQRWREDFLSDLNS 456 (456)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhC
Confidence 99999999998421 455566666666654 35777778888877653
No 154
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=91.33 E-value=5.8 Score=35.56 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=27.8
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSP 55 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 55 (458)
||||+.---+. |---+..|+++|.+ +|+|+++.|..+..
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 67777766654 33337888999965 68999999875543
No 155
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=91.32 E-value=5.4 Score=35.92 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=29.0
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSP 55 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 55 (458)
||||+..=-+. |---+..|++.|.+.| +|+++.|..+..
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 67777766664 4456888999998887 799998875443
No 156
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=90.57 E-value=7.2 Score=34.90 Aligned_cols=39 Identities=8% Similarity=0.050 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSP 55 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 55 (458)
||||+..=.+. |---+..|+++|. .+|+|+++.|..+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~-~~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLS-EKHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHH-hCCcEEEEccCCCCc
Confidence 67777776664 3344778888886 468999999875443
No 157
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=90.53 E-value=2.1 Score=45.53 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=61.0
Q ss_pred hhhcCCCccccccc---cCch-hHHHHHhhCCc---ccccccccchhhHHHHHHHHHh-cceecCCcccHHHHHHHHHHH
Q 012678 343 EVLAHPAVGGFWTH---NGWN-STLESICEGVP---MICQPCFGDQLVNARYVSHVWR-VGLHLERKFERREIETAIRRV 414 (458)
Q Consensus 343 ~ll~~~~~~~~I~H---gG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~l~~~i~~l 414 (458)
+++..+++ ||.- -|+| +..|++++|.| +++++-+ -..+.. +| -|+.+.+ .+.++++++|.++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~~----l~~~allVnP-~D~~~lA~AI~~a 440 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQS----LGAGALLVNP-WNITEVSSAIKEA 440 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchhh----hcCCeEEECC-CCHHHHHHHHHHH
Confidence 47788888 8754 4876 67799999999 4444422 222221 23 4677676 7899999999999
Q ss_pred hc-cchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 415 TV-EAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 415 l~-~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
|+ +. +.-+++.+++.+.++ .-+...-++.+++.++
T Consensus 441 L~m~~--~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 441 LNMSD--EERETRHRHNFQYVK-----THSAQKWADDFMSELN 476 (797)
T ss_pred HhCCH--HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHH
Confidence 98 42 333444555555544 2345555666655543
No 158
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=90.30 E-value=8.1 Score=34.59 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=60.3
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC----CCCceEEecCCCCCCCccCcccHHHHHHHHH
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN----YPHFSFNSISESLWESEVSTENAISLLTVLN 90 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (458)
||||+.-=-+. |---+..|+++|.+. |+|+++.|.....-... ...+++..+.+. .+.-...+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~---~~~v~GTPa------- 68 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG---FYAVDGTPT------- 68 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCC---eEEECCcHH-------
Confidence 67777766654 344578899999988 79999998754433221 112333332110 000001111
Q ss_pred HhcChhHHHHHHHHhhCCCCCCCeeEEEecC-------------chhhHHHHHHHcCCCeEEEecc
Q 012678 91 DKCVVPFQDCLAKLISNGDQEEPVTCLITDA-------------IWHFAQTVADTLRLPRIVLRTS 143 (458)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~-------------~~~~~~~~A~~lgiP~v~~~~~ 143 (458)
..+.-.+..+.. .+||+||+.. .+.+++.-|...|||.+.++..
T Consensus 69 ----DcV~~gl~~l~~-----~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 69 ----DCVHLALNGLLD-----PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred ----HHHHHHHHhhcc-----CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 111112333433 4689998643 2356677788889999998764
No 159
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=89.99 E-value=14 Score=33.03 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=46.4
Q ss_pred HHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcc------eeeccChhhhhcCCCcccccccc-CchhHHH
Q 012678 292 IAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGH------IVKWAPQQEVLAHPAVGGFWTHN-GWNSTLE 364 (458)
Q Consensus 292 ~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~ipq~~ll~~~~~~~~I~Hg-G~~s~~e 364 (458)
+...+++.+-.++.++.... .+.+-.-+.+++...-. -.++=|+.++|..++. +|.-. ..|-..|
T Consensus 189 l~k~l~~~g~~~lisfSRRT------p~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~sE 260 (329)
T COG3660 189 LVKILENQGGSFLISFSRRT------PDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMCSE 260 (329)
T ss_pred HHHHHHhCCceEEEEeecCC------cHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhhHH
Confidence 45667777778887775432 11111111122221111 1256689999988887 66554 4688899
Q ss_pred HHhhCCccccc
Q 012678 365 SICEGVPMICQ 375 (458)
Q Consensus 365 al~~GvP~l~~ 375 (458)
|.+.|+|+-++
T Consensus 261 AasTgkPv~~~ 271 (329)
T COG3660 261 AASTGKPVFIL 271 (329)
T ss_pred HhccCCCeEEE
Confidence 99999998765
No 160
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=89.86 E-value=3.2 Score=41.23 Aligned_cols=103 Identities=19% Similarity=0.216 Sum_probs=61.4
Q ss_pred eeccChhh---hhcCCCcccccc---ccCc-hhHHHHHhhCCc----ccccccccchhhHHHHHHHHHhcceecCCcccH
Q 012678 336 VKWAPQQE---VLAHPAVGGFWT---HNGW-NSTLESICEGVP----MICQPCFGDQLVNARYVSHVWRVGLHLERKFER 404 (458)
Q Consensus 336 ~~~ipq~~---ll~~~~~~~~I~---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 404 (458)
.+++++.+ ++..+++ +|. +-|+ .++.||+++|+| +|+--..+ - +.. . .-|..++. .+.
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~---~~~-~---~~g~lv~p-~d~ 414 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-A---AEE-L---SGALLVNP-YDI 414 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-c---hhh-c---CCCEEECC-CCH
Confidence 36777755 5788888 773 4465 477999999999 44332222 1 110 1 23555555 689
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 405 REIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 405 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
++++++|.+++++.. +..+++.++.++.+. .-+...-++.+++.+
T Consensus 415 ~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 415 DEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 999999999998621 122333333333332 345666666666654
No 161
>PRK14099 glycogen synthase; Provisional
Probab=89.81 E-value=3.5 Score=41.24 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=58.6
Q ss_pred eeeccChhh-hh-cCCCcccccc---ccCc-hhHHHHHhhCCccccccccc--chhhHHHH-HHHH-HhcceecCCcccH
Q 012678 335 IVKWAPQQE-VL-AHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFG--DQLVNARY-VSHV-WRVGLHLERKFER 404 (458)
Q Consensus 335 ~~~~ipq~~-ll-~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~-v~~~-~G~G~~l~~~~~~ 404 (458)
+.+|-.... ++ ..+++ ||. +=|. .+.+||+++|+|.|+....+ |.-....- .+.. -+.|...+. -++
T Consensus 355 ~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~-~d~ 431 (485)
T PRK14099 355 VIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP-VTA 431 (485)
T ss_pred EeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC-CCH
Confidence 456633222 33 34666 775 3343 47789999997766654432 32211110 0000 046777775 689
Q ss_pred HHHHHHHHH---HhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 405 REIETAIRR---VTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 405 ~~l~~~i~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
++|.++|.+ +++| +..+++..+ ..+ ...=|-.+.+++.++..++
T Consensus 432 ~~La~ai~~a~~l~~d---~~~~~~l~~---~~~---~~~fSw~~~a~~y~~lY~~ 478 (485)
T PRK14099 432 DALAAALRKTAALFAD---PVAWRRLQR---NGM---TTDVSWRNPAQHYAALYRS 478 (485)
T ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHH---Hhh---hhcCChHHHHHHHHHHHHH
Confidence 999999997 5666 333322221 111 1334556666666665443
No 162
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=89.73 E-value=0.56 Score=36.48 Aligned_cols=37 Identities=8% Similarity=0.145 Sum_probs=26.5
Q ss_pred CEEEEEcCCCCc---CHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQG---HINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~G---H~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|||+|+.-|-.+ .-...+.|+.+..+|||+|.++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 788998887643 3356889999999999999999875
No 163
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.42 E-value=20 Score=32.79 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=52.7
Q ss_pred eccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhH--HHHHHHHHhcceecCCcccHHHHHHHHHHH
Q 012678 337 KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVN--ARYVSHVWRVGLHLERKFERREIETAIRRV 414 (458)
Q Consensus 337 ~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~n--a~~v~~~~G~G~~l~~~~~~~~l~~~i~~l 414 (458)
.|-...++|+++++ .|--.| ..+-+++--|+|+|.+|-.+-|+.- |.|-.+-+|+.+.+-. -.+..-..+..++
T Consensus 301 sqqsfadiLH~ada--algmAG-TAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a~~~~q~l 376 (412)
T COG4370 301 SQQSFADILHAADA--ALGMAG-TATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAAAQAVQEL 376 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhcc-chHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhHHHHHHHH
Confidence 55555566666666 543333 1233457789999999999999765 4555554577776654 2333333344459
Q ss_pred hccchhHHHHHHHH
Q 012678 415 TVEAEGQEMRERIM 428 (458)
Q Consensus 415 l~~~~~~~~~~~a~ 428 (458)
+.| +.+-++++
T Consensus 377 l~d---p~r~~air 387 (412)
T COG4370 377 LGD---PQRLTAIR 387 (412)
T ss_pred hcC---hHHHHHHH
Confidence 998 66666665
No 164
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=87.56 E-value=1.3 Score=35.54 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+++.+|++.+.++-+|-.-..-++..|.++|++|+++...
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~ 40 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVM 40 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 4678999999999999999999999999999999999875
No 165
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=87.47 E-value=1.3 Score=44.43 Aligned_cols=91 Identities=15% Similarity=0.199 Sum_probs=64.6
Q ss_pred CcceeeccC--h-hhhhcCCCcccccccc---CchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHH
Q 012678 332 RGHIVKWAP--Q-QEVLAHPAVGGFWTHN---GWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 405 (458)
Q Consensus 332 ~~~~~~~ip--q-~~ll~~~~~~~~I~Hg---G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 405 (458)
++.+.++.+ + ...+.++.+ +|.=+ |.++..||+.+|+|+| .......|++. .=|..+. +..
T Consensus 410 ~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~---d~~ 476 (519)
T TIGR03713 410 RIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID---DIS 476 (519)
T ss_pred EEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC---CHH
Confidence 445667777 3 336666666 88766 6779999999999999 44456677773 6677663 788
Q ss_pred HHHHHHHHHhccc-hhHHHHHHHHHHHHHHH
Q 012678 406 EIETAIRRVTVEA-EGQEMRERIMHLKEKLE 435 (458)
Q Consensus 406 ~l~~~i~~ll~~~-~~~~~~~~a~~~~~~~~ 435 (458)
+|.++|..+|.+. .+..+...+-+.+.++.
T Consensus 477 ~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 477 ELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999984 24555555555555543
No 166
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=87.37 E-value=7.5 Score=33.13 Aligned_cols=101 Identities=8% Similarity=0.025 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCC------CCCCCCCCceEEecCCCCCCCccCcccHHHH
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS------PNPSNYPHFSFNSISESLWESEVSTENAISL 85 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (458)
+++..|.+++..+.|-....+.+|-+.+.+|+.|.++-.-... ...+..+++.+.....++.-.. .+..+.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~---~~~~e~ 96 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWET---QDRERD 96 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccC---CCcHHH
Confidence 4567899999999999999999999999999999997432111 0112224677777765432111 111111
Q ss_pred HHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchh
Q 012678 86 LTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWH 124 (458)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~ 124 (458)
. ..+...+....+.+.. .++|+||.|....
T Consensus 97 ~----~~~~~~~~~a~~~l~~-----~~ydlvVLDEi~~ 126 (191)
T PRK05986 97 I----AAAREGWEEAKRMLAD-----ESYDLVVLDELTY 126 (191)
T ss_pred H----HHHHHHHHHHHHHHhC-----CCCCEEEEehhhH
Confidence 1 1122223333333332 5799999998553
No 167
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=26 Score=32.69 Aligned_cols=63 Identities=22% Similarity=0.240 Sum_probs=50.7
Q ss_pred ccccCCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCC--CCCCCCCceEEecCC
Q 012678 8 NVQQKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSP--NPSNYPHFSFNSISE 70 (458)
Q Consensus 8 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~ 70 (458)
.....++.|++++..|-.||--.|.-=|..|++.|.+|.+++.-...+ ..-+.++++++.++.
T Consensus 6 ~~~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~ 70 (444)
T KOG2941|consen 6 YENKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPN 70 (444)
T ss_pred cccccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCC
Confidence 344566789999999999999999999999999999999998753322 233468899998885
No 168
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=86.63 E-value=12 Score=36.71 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=63.9
Q ss_pred CCccee-eccC-h-hhhhcCCCccccccccC--chhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHH
Q 012678 331 GRGHIV-KWAP-Q-QEVLAHPAVGGFWTHNG--WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 405 (458)
Q Consensus 331 ~~~~~~-~~ip-q-~~ll~~~~~~~~I~HgG--~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 405 (458)
+|+.+. ++.+ + .+++..|++-+-|+||. ..++.||+.+|+|++.+=.... +...+.. |-.... -+.+
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i~~----g~l~~~-~~~~ 399 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFIAS----ENIFEH-NEVD 399 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---CcccccC----CceecC-CCHH
Confidence 555654 6677 3 55999999988999987 4899999999999998743321 1122221 333332 4789
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 012678 406 EIETAIRRVTVEAEGQEMRERIMHLKEKL 434 (458)
Q Consensus 406 ~l~~~i~~ll~~~~~~~~~~~a~~~~~~~ 434 (458)
++.++|.++|++. ..++++..+-++.+
T Consensus 400 ~m~~~i~~lL~d~--~~~~~~~~~q~~~a 426 (438)
T TIGR02919 400 QLISKLKDLLNDP--NQFRELLEQQREHA 426 (438)
T ss_pred HHHHHHHHHhcCH--HHHHHHHHHHHHHh
Confidence 9999999999982 25555555554443
No 169
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=86.13 E-value=17 Score=32.75 Aligned_cols=109 Identities=10% Similarity=0.060 Sum_probs=56.4
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhC---CCEEEEEeCCCCCCCCCC----CCCceEEecCCCCCCCccCcccHHHHHH
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSK---GFSITIIHTNFNSPNPSN----YPHFSFNSISESLWESEVSTENAISLLT 87 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~r---Gh~Vt~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (458)
||||+.---+. |---+..|++.|.+. |++|+++.|.....-... ...+++..+.++. +.-...+..
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~~---yav~GTPaD--- 73 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPRR---FAAEGSPAD--- 73 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCCe---EEEcCchHH---
Confidence 56666555442 333456677777663 479999999755433221 1223343332110 111111111
Q ss_pred HHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecC----------c---hhhHHHHHHHcCCCeEEEec
Q 012678 88 VLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDA----------I---WHFAQTVADTLRLPRIVLRT 142 (458)
Q Consensus 88 ~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~----------~---~~~~~~~A~~lgiP~v~~~~ 142 (458)
.+.-.+..++.. .+||+||+.. + +.+++.-|..+|||.|.++.
T Consensus 74 --------CV~lal~~~~~~----~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 74 --------CVLAALYDVMKD----APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred --------HHHHHHHHhcCC----CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 111122333321 3689998642 2 25566777888999999876
No 170
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=85.93 E-value=0.94 Score=37.82 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|||.++.-.+. + --.|+++..+|||+||-++-.
T Consensus 1 mKIaiIgAsG~--~--Gs~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGASGK--A--GSRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEecCch--h--HHHHHHHHHhCCCeeEEEEeC
Confidence 67887765553 2 236889999999999999875
No 171
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=85.01 E-value=5.5 Score=36.91 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=52.9
Q ss_pred CCcceeeccC---hhhhhcCCCccccccc---cCch-hHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCccc
Q 012678 331 GRGHIVKWAP---QQEVLAHPAVGGFWTH---NGWN-STLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFE 403 (458)
Q Consensus 331 ~~~~~~~~ip---q~~ll~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 403 (458)
+++.+.+++| ...++..+++ ++.- .|.| ++.||+++|+|++... .......+.+. +.|. +....+
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~~~-~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVVEDG-ETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHhcCC-CceE-ecCCCC
Confidence 4566778888 2336776777 6666 3554 4699999999996654 33344444441 3466 333236
Q ss_pred HHHHHHHHHHHhcc
Q 012678 404 RREIETAIRRVTVE 417 (458)
Q Consensus 404 ~~~l~~~i~~ll~~ 417 (458)
.+++.+++..++++
T Consensus 329 ~~~~~~~i~~~~~~ 342 (381)
T COG0438 329 VEELADALEQLLED 342 (381)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999998
No 172
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=83.87 E-value=5.3 Score=36.36 Aligned_cols=40 Identities=25% Similarity=0.215 Sum_probs=33.9
Q ss_pred eeeccChhhhhcCCCccccccccCchhHHHHHhhCCccccccc
Q 012678 335 IVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC 377 (458)
Q Consensus 335 ~~~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~ 377 (458)
+.+-++-.++|.+++. +||-.+ .+-.||+.+|+|++++..
T Consensus 187 ~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 187 IDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred ECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 4467788899999999 999776 578999999999999863
No 173
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=83.79 E-value=7.2 Score=32.06 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=44.2
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISE 70 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~ 70 (458)
+.+|||++.-.|+.|-.--++.+++.|.++|+.|-=+.++.-...-. -.||+.+++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGk-R~GF~Ivdl~t 60 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGK-RIGFKIVDLAT 60 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCe-EeeeEEEEccC
Confidence 45799999999999999999999999999999987655542221111 15788888763
No 174
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=83.65 E-value=1.5 Score=34.79 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=30.6
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
|||++...|+.+-.. ...+.++|.++|++|.++.++.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCc
Confidence 688998888866666 9999999999999999998863
No 175
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=82.47 E-value=2.1 Score=33.38 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=32.8
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
||++.+.++-.|.....-++..|.++|++|++....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 589999999999999999999999999999887653
No 176
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=82.23 E-value=9.7 Score=31.90 Aligned_cols=98 Identities=10% Similarity=0.062 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEe---CC--CCC-CCCCCCCCceEEecCCCCCCCccCcccHHHHH
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIH---TN--FNS-PNPSNYPHFSFNSISESLWESEVSTENAISLL 86 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~---~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (458)
++.-|.+++..+.|-..-.+.+|-..+.+|+.|.++- .. ... ...... ++++.....++.-... +.....
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~-~~~~~~~g~g~~~~~~---~~~~~~ 79 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH-GVEFQVMGTGFTWETQ---NREADT 79 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc-CcEEEECCCCCeecCC---CcHHHH
Confidence 3467888999999999999999999999999997662 21 000 011222 5777777655432111 111111
Q ss_pred HHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCch
Q 012678 87 TVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIW 123 (458)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~ 123 (458)
..+...+....+.+.. .++|+||.|...
T Consensus 80 ----~~~~~~~~~a~~~l~~-----~~~DlvVLDEi~ 107 (173)
T TIGR00708 80 ----AIAKAAWQHAKEMLAD-----PELDLVLLDELT 107 (173)
T ss_pred ----HHHHHHHHHHHHHHhc-----CCCCEEEehhhH
Confidence 1122222223333332 579999999855
No 177
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=81.63 E-value=3.8 Score=41.25 Aligned_cols=75 Identities=11% Similarity=0.101 Sum_probs=47.6
Q ss_pred ChhhhhcCCCcccccc---ccCc-hhHHHHHhhCCccccccccc-chhhHHHHHHHHHhcceecCC------cccHHHHH
Q 012678 340 PQQEVLAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFG-DQLVNARYVSHVWRVGLHLER------KFERREIE 408 (458)
Q Consensus 340 pq~~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~G~G~~l~~------~~~~~~l~ 408 (458)
+..+++..|++ +|. +=|+ -++.||+++|+|+|.....+ ..+.. ..+...-..|+.+.. ..+.++|+
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 35667788888 665 3454 59999999999999987643 22221 122210014655542 34678888
Q ss_pred HHHHHHhcc
Q 012678 409 TAIRRVTVE 417 (458)
Q Consensus 409 ~~i~~ll~~ 417 (458)
+++.++++.
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 888888865
No 178
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=80.87 E-value=16 Score=30.14 Aligned_cols=98 Identities=12% Similarity=0.162 Sum_probs=57.1
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCC--C----CCCCCCCCceEEecCCCCCCCccCcccHHHHHHH
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN--S----PNPSNYPHFSFNSISESLWESEVSTENAISLLTV 88 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (458)
.-|.+++.++.|-....+.+|-..+.+|+.|.++-.-.. . ......+++.+.....+..-.. .+..+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~---~~~~~~~-- 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTT---ENDEEDI-- 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCC---CChHHHH--
Confidence 467888999999999999999999999999999532111 0 1112235677777665432111 1111111
Q ss_pred HHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchh
Q 012678 89 LNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWH 124 (458)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~ 124 (458)
......+. ...+...+ ..+|+||.|....
T Consensus 78 --~~a~~~~~-~a~~~~~~----~~~dLlVLDEi~~ 106 (159)
T cd00561 78 --AAAAEGWA-FAKEAIAS----GEYDLVILDEINY 106 (159)
T ss_pred --HHHHHHHH-HHHHHHhc----CCCCEEEEechHh
Confidence 11112222 22233332 5799999998554
No 179
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.47 E-value=20 Score=32.27 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|||+++-.- |. -..|++.|.++||+|+..+..
T Consensus 1 m~ILvlGGT--~e---gr~la~~L~~~g~~v~~s~~t 32 (256)
T TIGR00715 1 MTVLLMGGT--VD---SRAIAKGLIAQGIEILVTVTT 32 (256)
T ss_pred CeEEEEech--HH---HHHHHHHHHhCCCeEEEEEcc
Confidence 566665332 32 678999999999999887664
No 180
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=78.24 E-value=16 Score=33.65 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=77.6
Q ss_pred EEEEcCccccCCHHHHHHHHHHHHh-CCC--ceEEEEcCCCCCCCcccCCCchhHHHhhc-CCcce-eeccCh---hhhh
Q 012678 274 MYVSFGSIVVVNVTEFLEIAWGLAN-SRV--PFLWVVRPGLVPGVEWLEPLPKGFLEMLD-GRGHI-VKWAPQ---QEVL 345 (458)
Q Consensus 274 i~vs~Gs~~~~~~~~~~~~~~al~~-~~~--~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~-~~~ipq---~~ll 345 (458)
+-|-.|..+. +.+...++++++++ .+. +++.-++-+.. +.+....+-..-.+..+ +++.+ .+++|. .++|
T Consensus 147 ~tIlvGNSgd-~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~g-n~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL 224 (322)
T PRK02797 147 MTILVGNSGD-RSNRHIEALRALHQQFGDNVKIIVPMGYPAN-NQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALL 224 (322)
T ss_pred eEEEEeCCCC-CcccHHHHHHHHHHHhCCCeEEEEECCcCCC-CHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHH
Confidence 4444466554 34445555666644 344 55544433111 10100111111112233 45564 477774 5599
Q ss_pred cCCCccccccc--cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC-cccHHHHHHHHHHHh
Q 012678 346 AHPAVGGFWTH--NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVT 415 (458)
Q Consensus 346 ~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~~i~~ll 415 (458)
++|+++.|+|+ =|.||++-.+..|+|+++- .+-+.+....+ .|+-+-.+. .++...+.++=+++.
T Consensus 225 ~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~e--~gv~Vlf~~d~L~~~~v~e~~rql~ 292 (322)
T PRK02797 225 RQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLTE--QGLPVLFTGDDLDEDIVREAQRQLA 292 (322)
T ss_pred HhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHHh--CCCeEEecCCcccHHHHHHHHHHHH
Confidence 99999888886 5899999999999999875 34445555333 266665555 788888877655544
No 181
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=76.94 E-value=1.9 Score=41.46 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=64.8
Q ss_pred Cccee-eccChhhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecC----C--cccH
Q 012678 332 RGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLE----R--KFER 404 (458)
Q Consensus 332 ~~~~~-~~ipq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~----~--~~~~ 404 (458)
+++.+ +..+-.++|..+++ +||=-. ..+.|.+..+.|++....-.|.+... . |.-.... . --+.
T Consensus 253 ~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~~~ 323 (369)
T PF04464_consen 253 NIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVYNF 323 (369)
T ss_dssp TEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EESSH
T ss_pred cEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeCCH
Confidence 33443 44567889999999 999774 58899999999999887666655332 1 3332221 1 2478
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 405 REIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 405 ~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
++|.++|..++++. ..++++.+++.+++.. ...| ++.+++++.|.
T Consensus 324 ~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg----~s~eri~~~I~ 368 (369)
T PF04464_consen 324 EELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDG----NSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-----HHHHHHHHHH
T ss_pred HHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCc----hHHHHHHHHHh
Confidence 99999999998763 4556666777777742 1123 45555555553
No 182
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=75.93 E-value=19 Score=38.19 Aligned_cols=110 Identities=17% Similarity=0.153 Sum_probs=65.1
Q ss_pred eeeccChhh---hhcCCCccccccc---cCc-hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHH
Q 012678 335 IVKWAPQQE---VLAHPAVGGFWTH---NGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREI 407 (458)
Q Consensus 335 ~~~~ipq~~---ll~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 407 (458)
+.+++++.+ +++.+++ ++.- -|+ .+..|++++|+|-...|+..+--.-+. + +.-|+.+++ .+++++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P-~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNP-NDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECC-CCHHHH
Confidence 346778765 6778888 7754 355 478899999775333333222111111 2 223666665 689999
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 408 ETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 408 ~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
+++|.++++... +..+++.+++++.++ .-+...-++.+++.+.+
T Consensus 419 a~ai~~~l~~~~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 419 AAAIKRALEMPE-EEQRERMQAMQERLR-----RYDVHKWASDFLDELRE 462 (726)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHH
Confidence 999999998421 234444444444443 34566667776666543
No 183
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=75.14 E-value=4.8 Score=34.43 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
+.+||++-..|+.|=+.-...++++|.++||+|.++.++.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 4568888888774444447999999999999999999873
No 184
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=74.51 E-value=6.3 Score=35.24 Aligned_cols=98 Identities=8% Similarity=0.040 Sum_probs=53.4
Q ss_pred CCcEEEEEcCcccc---CCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcc-eeec--cCh-h
Q 012678 270 AKSVMYVSFGSIVV---VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGH-IVKW--APQ-Q 342 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~--ipq-~ 342 (458)
+++.|.+..|+... .+.+.+..+++.+.+.++++++..++... ....-+.+.+....++. +.+- +.+ .
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ 178 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ-----EKEIADQIAAGLQNPVINLAGKTSLRELA 178 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH-----HHHHHHHHHTTHTTTTEEETTTS-HHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH-----HHHHHHHHHHhcccceEeecCCCCHHHHH
Confidence 56788888887664 67888999999998877665544333210 00011111111111122 2222 222 4
Q ss_pred hhhcCCCccccccccCchhHHHHHhhCCccccc
Q 012678 343 EVLAHPAVGGFWTHNGWNSTLESICEGVPMICQ 375 (458)
Q Consensus 343 ~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 375 (458)
.++.++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 179 ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 179 ALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 58899999 9984 458899999999999988
No 185
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=71.32 E-value=8.3 Score=27.50 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEe
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIH 49 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 49 (458)
--++++..+...|...+..+|+.|.++|+.|...-
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 45777777778999999999999999999987653
No 186
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=71.08 E-value=53 Score=30.18 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=36.6
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (458)
.++-+|.+--.|+-|--.-.-.|.++|.++||.|-+++-+...
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 4456788888999999999999999999999999998876443
No 187
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=70.30 E-value=9.4 Score=29.60 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=33.1
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.|+++.+.+..-|-.-+..++..|.++||+|.++-..
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 3789999999999999999999999999999988553
No 188
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=70.16 E-value=36 Score=31.82 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=30.7
Q ss_pred CEEEEEcCC-CCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLP-LQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+||+|++.= |-|-.--..++|-.|++.|+.|.+++++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStD 39 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTD 39 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 577777765 5598888888999999999998888876
No 189
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=68.14 E-value=20 Score=31.21 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=32.7
Q ss_pred EEEEEcCC--CCcCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 16 RVILFPLP--LQGHINPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 16 ~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
+|++++++ +-|-.-..-.|+-.|+++|+.|.++-.+..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 67888887 669999999999999999999999977643
No 190
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=67.51 E-value=1.1e+02 Score=28.76 Aligned_cols=277 Identities=14% Similarity=0.109 Sum_probs=130.4
Q ss_pred HHHHHhhCCCCCCCeeEEEecCchhhH-HHHHHHcCCCeEEEecchHHHHHHHHHHHHHHHhcCCCccCCCCccccCCCC
Q 012678 100 CLAKLISNGDQEEPVTCLITDAIWHFA-QTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQDSQLEKPVTELP 178 (458)
Q Consensus 100 ~l~~l~~~~~~~~~pDlvI~D~~~~~~-~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 178 (458)
.++++.+ ..||+-|-.+.++.. ..+++..++|++.+...|....-....... ++.+ +
T Consensus 142 ~~Eai~r-----~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~q-rq~s--------------~-- 199 (465)
T KOG1387|consen 142 AFEAIIR-----FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQ-RQKS--------------G-- 199 (465)
T ss_pred HHHHHHh-----CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHh-hhhc--------------c--
Confidence 4566666 789999988766444 455567799999877776554322221110 0000 0
Q ss_pred CCCCCCCCCcccCCCchHHHHHHHHHhhc-cCccEEEEcChhhhhHHHHHHhhhcCCCC-ccccCC-ccccccccCCCcc
Q 012678 179 PLRVKDIPIIVTHDTRNFHQLISAVVSKT-KACSGLIWNSFEDLEQTELTRLHKDFPIP-MFPIGP-FHKYCLASSSSLL 255 (458)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~le~~~~~~~~~~~~~p-v~~vGp-l~~~~~~~~~~~~ 255 (458)
....-.-...++|..+.... ..++.++.||...-.+ + .+-|+.. ...|-| +...
T Consensus 200 ---------~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nH--I---~qiW~~~~~~iVyPPC~~e--------- 256 (465)
T KOG1387|consen 200 ---------ILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNH--I---KQIWQSNTCSIVYPPCSTE--------- 256 (465)
T ss_pred ---------hhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHH--H---HHHhhccceeEEcCCCCHH---------
Confidence 00011223466677666655 4557788888765332 2 2222222 222222 2211
Q ss_pred cCccccchhhccCCCCcEEEEEcCccccCCHHHHH---HHHHHHHh-----CCCceEEEEcCCCCCCCc--ccCCCchhH
Q 012678 256 SQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFL---EIAWGLAN-----SRVPFLWVVRPGLVPGVE--WLEPLPKGF 325 (458)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~i~vs~Gs~~~~~~~~~~---~~~~al~~-----~~~~~i~~~~~~~~~~~~--~~~~l~~~~ 325 (458)
.+.+-....+++-+..+++|-.-. ++..+ -.+--+++ ...++-..+.+..+..++ ....+-+.-
T Consensus 257 ----~lks~~~te~~r~~~ll~l~Q~RP--EKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a 330 (465)
T KOG1387|consen 257 ----DLKSKFGTEGERENQLLSLAQFRP--EKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLA 330 (465)
T ss_pred ----HHHHHhcccCCcceEEEEEeecCc--ccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHH
Confidence 122222222456677777776543 22222 11111122 222332233232222211 011111111
Q ss_pred HH-hhcCCcceeeccChhh---hhcCCCccccccccCch-----hHHHHHhhCCcccccccccchhhHHHHHHHHHhcce
Q 012678 326 LE-MLDGRGHIVKWAPQQE---VLAHPAVGGFWTHNGWN-----STLESICEGVPMICQPCFGDQLVNARYVSHVWRVGL 396 (458)
Q Consensus 326 ~~-~~~~~~~~~~~ipq~~---ll~~~~~~~~I~HgG~~-----s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 396 (458)
++ +.++++.+..-+|..+ +|..+.+ -| |+=|| ++.|.+++|.=+|+---.+--.+.- .. -.|-
T Consensus 331 ~~L~i~~~v~F~~N~Py~~lv~lL~~a~i--Gv-h~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV---~~--~~G~ 402 (465)
T KOG1387|consen 331 EELKIPKHVQFEKNVPYEKLVELLGKATI--GV-HTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIV---TP--WDGE 402 (465)
T ss_pred HhcCCccceEEEecCCHHHHHHHhcccee--eh-hhhhhhhcchhHHHHHhcCceEEEeCCCCCceeee---ec--cCCc
Confidence 11 3446667888888766 5556655 23 33333 7899999997443322111111110 00 0111
Q ss_pred ecCC-cccHHHHHHHHHHHhccc-h-hHHHHHHHHHHHHHHH
Q 012678 397 HLER-KFERREIETAIRRVTVEA-E-GQEMRERIMHLKEKLE 435 (458)
Q Consensus 397 ~l~~-~~~~~~l~~~i~~ll~~~-~-~~~~~~~a~~~~~~~~ 435 (458)
.--- ..|.++-+++|.+++... + .-.+|++|++--+++-
T Consensus 403 ~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFs 444 (465)
T KOG1387|consen 403 TTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFG 444 (465)
T ss_pred cceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 1111 257788888888888642 2 3456666666555554
No 191
>PRK11519 tyrosine kinase; Provisional
Probab=67.14 E-value=1.4e+02 Score=31.75 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=32.9
Q ss_pred CCCCEEEEEcC--CCCcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 12 KKGRRVILFPL--PLQGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 12 ~~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
..+.|+++++. |+-|--.-...||..|++.|+.|.++-.+.
T Consensus 523 ~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 523 QAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred CCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 34557777766 466888899999999999999999996653
No 192
>PRK14099 glycogen synthase; Provisional
Probab=66.97 E-value=9.4 Score=38.22 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCC------CcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 13 KGRRVILFPLPL------QGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 13 ~~~~il~~~~~~------~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
++|||++++.-. .|=-.-+-.|.++|+++||+|.+++|.+
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 579999987532 1223345678899999999999999953
No 193
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=66.19 E-value=3.6 Score=40.38 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=45.0
Q ss_pred hHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC-cccHHHHHHHHHHHhccchhHHHHHHHH
Q 012678 361 STLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVTVEAEGQEMRERIM 428 (458)
Q Consensus 361 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~ 428 (458)
++.||+++|+|++.. ++..-+..+++ .--|...++ .-....+++++.++..| ++++.++.
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp~~e~~~~~a~~~~kl~~~---p~l~~~~~ 441 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDPGQEAVAELADALLKLRRD---PELWARMG 441 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCCchHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence 789999999999987 55556677776 366888887 33334799999999999 66655443
No 194
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=65.92 E-value=13 Score=32.21 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.+.||++.+.++-.|-....-++..|..+|++|+++...
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 367999999999999999999999999999999888754
No 195
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=65.88 E-value=13 Score=32.00 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.+.||++.+.++-.|-....-++.-|..+|++|+++...
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~ 121 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD 121 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC
Confidence 457999999999999999999999999999999999875
No 196
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=65.45 E-value=56 Score=32.03 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=54.0
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhcC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCV 94 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (458)
.|+.++..+.. .+.+++-|.+-|-+|..+++......... ..... + +.+...... .
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~-~~~~~--~-~~~~~~v~~---------------~ 341 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGA-EDKRW--L-EMLGVEVKY---------------R 341 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccH-HHHHH--H-HhcCCCcee---------------c
Confidence 38888877765 88889999999999999877521101000 00000 0 000000000 0
Q ss_pred hhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEe
Q 012678 95 VPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLR 141 (458)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 141 (458)
..+.+.++.+.+ .+||++|... -+..+|+++|||.+.+.
T Consensus 342 ~dl~~~~~~l~~-----~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 342 ASLEDDMEAVLE-----FEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred cCHHHHHHHHhh-----CCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 122223344433 6899999884 35568999999999853
No 197
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=64.75 E-value=38 Score=27.62 Aligned_cols=136 Identities=20% Similarity=0.242 Sum_probs=71.2
Q ss_pred EEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccc
Q 012678 273 VMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGG 352 (458)
Q Consensus 273 ~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~ 352 (458)
.|.|-+||.. +....+++...|++.+..+-..+... ...|+.+.+ |+...+- ..+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa--------HR~p~~l~~----------~~~~~~~-~~~~v-- 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA--------HRTPERLLE----------FVKEYEA-RGADV-- 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T--------TTSHHHHHH----------HHHHTTT-TTESE--
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec--------cCCHHHHHH----------HHHHhcc-CCCEE--
Confidence 4566677765 56667888899999886655544332 224554421 1111110 23455
Q ss_pred cccccCch----hHHHHHhhCCcccccccccchhhHH----HHHHHHHhcceecCC---cccHHHHHHHHHHHhccchhH
Q 012678 353 FWTHNGWN----STLESICEGVPMICQPCFGDQLVNA----RYVSHVWRVGLHLER---KFERREIETAIRRVTVEAEGQ 421 (458)
Q Consensus 353 ~I~HgG~~----s~~eal~~GvP~l~~P~~~DQ~~na----~~v~~~~G~G~~l~~---~~~~~~l~~~i~~ll~~~~~~ 421 (458)
||.=.|.. ++..++- -.|+|.+|...++.... ..++---|+++..-. ..+...+...|-.+ .| +
T Consensus 59 iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~-~d---~ 133 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILAL-KD---P 133 (150)
T ss_dssp EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHT-T----H
T ss_pred EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhc-CC---H
Confidence 88888754 3444443 67999999987654322 222210144433222 23444444444433 34 6
Q ss_pred HHHHHHHHHHHHHHH
Q 012678 422 EMRERIMHLKEKLEL 436 (458)
Q Consensus 422 ~~~~~a~~~~~~~~~ 436 (458)
.++++.+..+++.++
T Consensus 134 ~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 134 ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 889998888888763
No 198
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.39 E-value=74 Score=28.10 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=58.1
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCc-cC--------cccH
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESE-VS--------TENA 82 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~ 82 (458)
+....+.|+|..-+ ....++++.++||+|.+=.+-..........+ .+..+...+. .. ..+.
T Consensus 52 p~eVTlA~~P~~~~-----~~~~~~~A~~~G~evlih~PmeP~~~~~~e~g----tL~~~~s~~e~~~rl~~a~~~v~~~ 122 (250)
T COG2861 52 PPEVTLAFAPFAPH-----AREWAQKARNAGHEVLIHMPMEPFSYPKIEPG----TLRPGMSAEEILRRLRKAMNKVPDA 122 (250)
T ss_pred CccceEEecCCCch-----hHHHHHHHHhcCCEEEEeccCCcccCCCCCCC----CcccCCCHHHHHHHHHHHHhhCccc
Confidence 44556666666542 34678888899999988776422211111122 1211111110 00 0000
Q ss_pred ---HHHHHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchh---hHHHHHHHcCCCeEE
Q 012678 83 ---ISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWH---FAQTVADTLRLPRIV 139 (458)
Q Consensus 83 ---~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~---~~~~~A~~lgiP~v~ 139 (458)
-..+......-...+..++++|.+ -++.+.|..+. -+..+|...|||++.
T Consensus 123 ~GlnNhmGs~~tsn~~aM~~~m~~Lk~-------r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 123 VGLNNHMGSRFTSNEDAMEKLMEALKE-------RGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred eeehhhhhhhhcCcHHHHHHHHHHHHH-------CCeEEEcccccccchhhhhHhhcCCceee
Confidence 011222222222344446666653 58999998663 346789999999987
No 199
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=64.17 E-value=23 Score=33.22 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=29.8
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 20 FPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 20 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
++.||.|-.--.+.|++.|.++|+.|.+++-.+
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 577888999999999999999999999998753
No 200
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=63.38 E-value=55 Score=30.76 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=59.7
Q ss_pred CCcce-eeccCh---hhhhcCCCccccccc--cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC-ccc
Q 012678 331 GRGHI-VKWAPQ---QEVLAHPAVGGFWTH--NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER-KFE 403 (458)
Q Consensus 331 ~~~~~-~~~ipq---~~ll~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~ 403 (458)
+++.+ .+++|. .++|..|+++.|.+. =|.|++.-.|..|+|+++- .+-+.+ +-+.+. |+=+-... +++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~-~~l~~~-~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFW-QDLKEQ-GIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHH-HHHHhC-CCeEEeccccCC
Confidence 35554 478885 458999999877775 5899999999999999764 233333 444543 66665554 899
Q ss_pred HHHHHHHHHHHhcc
Q 012678 404 RREIETAIRRVTVE 417 (458)
Q Consensus 404 ~~~l~~~i~~ll~~ 417 (458)
...++++=+++.+-
T Consensus 320 ~~~v~ea~rql~~~ 333 (360)
T PF07429_consen 320 EALVREAQRQLANV 333 (360)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999998888753
No 201
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=62.99 E-value=15 Score=30.54 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=20.9
Q ss_pred cccccCc------hhHHHHHhhCCcccccccc
Q 012678 353 FWTHNGW------NSTLESICEGVPMICQPCF 378 (458)
Q Consensus 353 ~I~HgG~------~s~~eal~~GvP~l~~P~~ 378 (458)
+++|+|- +.+.+|...++|+|++.-.
T Consensus 63 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~ 94 (162)
T cd07038 63 LVTTYGVGELSALNGIAGAYAEHVPVVHIVGA 94 (162)
T ss_pred EEEcCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 7777774 4778899999999999643
No 202
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=62.94 E-value=14 Score=29.71 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=35.7
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
.++.||++.+.+..||-.-.--+++.|+..|.+|.....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 578899999999999999999999999999999987654
No 203
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=62.69 E-value=10 Score=32.20 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
||++--.|+.|-+.-.+.+.++|.+.|++|+++.++
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~ 37 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSE 37 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEch
Confidence 677877787777777779999999999999999886
No 204
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=62.66 E-value=13 Score=29.06 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
||++.+.++-.|-.-..-++.-|...|++|.+....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 689999999999999999999999999999999874
No 205
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=62.20 E-value=99 Score=26.32 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCC-----CC-CCCC-CCceEEecCCCCCCCccCcccHHHH
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS-----PN-PSNY-PHFSFNSISESLWESEVSTENAISL 85 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-----~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (458)
++.=|.+++..+.|-.-..+.+|-.-.-+|..|.++---... .. .... .++.++..++++........ +
T Consensus 27 ~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~---~- 102 (198)
T COG2109 27 EKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDRE---A- 102 (198)
T ss_pred ccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcH---H-
Confidence 345588889999999888888887777778777776321110 00 1111 35777777765543322111 1
Q ss_pred HHHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchh
Q 012678 86 LTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWH 124 (458)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~ 124 (458)
+. ..+...+....+.+.+ .++|+||.|.++.
T Consensus 103 --d~-~aa~~~w~~a~~~l~~-----~~ydlviLDEl~~ 133 (198)
T COG2109 103 --DI-AAAKAGWEHAKEALAD-----GKYDLVILDELNY 133 (198)
T ss_pred --HH-HHHHHHHHHHHHHHhC-----CCCCEEEEehhhH
Confidence 11 3333444445555544 5799999998765
No 206
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=61.39 E-value=36 Score=31.74 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=29.6
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 20 FPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 20 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
++.|+.|-.--.+.|++.|.++|+.|.+++-.+.
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 69 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYG 69 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 4578889999999999999999999999987543
No 207
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=60.42 E-value=37 Score=28.49 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCC------CCCCCCCceEEecCCCCCCCccCcccHHHHH
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSP------NPSNYPHFSFNSISESLWESEVSTENAISLL 86 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (458)
++..|-+++..+.|-....+.+|-.-+-+|..|.++-.-.... .....+++++.....++........ .-
T Consensus 2 ~~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~---~~- 77 (172)
T PF02572_consen 2 ERGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFVWRMNEEE---ED- 77 (172)
T ss_dssp ----EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT----GGGHH---HH-
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCcccccCCCcH---HH-
Confidence 4567889999999999888888877777777777774321100 0122345777666654322211111 11
Q ss_pred HHHHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCchh
Q 012678 87 TVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWH 124 (458)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~ 124 (458)
...+...+....+.+.. ..+|+||.|....
T Consensus 78 ---~~~~~~~~~~a~~~i~~-----~~~dlvILDEi~~ 107 (172)
T PF02572_consen 78 ---RAAAREGLEEAKEAISS-----GEYDLVILDEINY 107 (172)
T ss_dssp ---HHHHHHHHHHHHHHTT------TT-SEEEEETHHH
T ss_pred ---HHHHHHHHHHHHHHHhC-----CCCCEEEEcchHH
Confidence 22223333333333332 5799999998543
No 208
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=59.35 E-value=19 Score=31.38 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.+.||++.+.++-.|-....-++-.|..+|++|+++...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~ 125 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM 125 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC
Confidence 567999999999999999999999999999999999875
No 209
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=58.53 E-value=1.1e+02 Score=25.45 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=23.4
Q ss_pred CCCccccccccCc------hhHHHHHhhCCccccccc
Q 012678 347 HPAVGGFWTHNGW------NSTLESICEGVPMICQPC 377 (458)
Q Consensus 347 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 377 (458)
.+.+ +++|+|- +.+.+|...++|+|++.-
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 4555 8888884 478899999999999963
No 210
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=58.28 E-value=87 Score=31.31 Aligned_cols=107 Identities=12% Similarity=0.189 Sum_probs=66.0
Q ss_pred ceeeccChhh---hhcCCCcccccc---ccCchhHH-HHHhhCC----cccccccccchhhHHHHHHHHHhcceecCCcc
Q 012678 334 HIVKWAPQQE---VLAHPAVGGFWT---HNGWNSTL-ESICEGV----PMICQPCFGDQLVNARYVSHVWRVGLHLERKF 402 (458)
Q Consensus 334 ~~~~~ipq~~---ll~~~~~~~~I~---HgG~~s~~-eal~~Gv----P~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 402 (458)
++.+.+|+.+ ++..+++ ++. .-|+|-+. |.++++. |+|+=-+. -|. +. +.-++.+++ .
T Consensus 365 ~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa--~~-l~~AllVNP-~ 433 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA--VE-LKGALLTNP-Y 433 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch--hh-cCCCEEECC-C
Confidence 3457788765 5667777 554 35888554 9999877 33332221 122 33 344666666 7
Q ss_pred cHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 403 ERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 403 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
+.++++++|.++|+... ++-+++.+++.+.++ .-....=++.+++.+.+
T Consensus 434 d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 434 DPVRMDETIYVALAMPK-AEQQARMREMFDAVN-----YYDVQRWADEFLAAVSP 482 (487)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhh
Confidence 99999999999998621 344555566665554 23455556666666543
No 211
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=58.12 E-value=45 Score=27.68 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=27.9
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 19 LFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 19 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
..+-|+.|--.-...||..|+++|+.|.++-.+
T Consensus 5 ~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 5 MSGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred ecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 344567799999999999999999999999665
No 212
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=58.10 E-value=38 Score=33.24 Aligned_cols=36 Identities=14% Similarity=-0.034 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
+.||||++-.+++-| +|++.|++.++...+++.+.|
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 459999999998766 789999998866555555444
No 213
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=58.03 E-value=20 Score=33.13 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=34.2
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|||++.-=||.|-..-.+.||..|+++|+.|.++-.+
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 7899999999999999999999999999999998654
No 214
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=57.38 E-value=42 Score=31.31 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=29.6
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 20 FPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 20 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
++.|+.|-.--.+.||++|.+||..+.+++-.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRG 86 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRG 86 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecC
Confidence 57788999999999999999999999999875
No 215
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=56.88 E-value=1.2e+02 Score=29.68 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=22.1
Q ss_pred CCeeEEEecCchhhHHHHHHHcCCCeEEEe
Q 012678 112 EPVTCLITDAIWHFAQTVADTLRLPRIVLR 141 (458)
Q Consensus 112 ~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 141 (458)
.+||++|... .+..+|+++|||.+.+.
T Consensus 349 ~~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 5899999873 36679999999998854
No 216
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=56.44 E-value=15 Score=31.12 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=30.8
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
+||++...|+.|=.. ...+.+.|.++|++|.++.++..
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A 39 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAA 39 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhH
Confidence 368888777755554 89999999999999999988743
No 217
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=56.18 E-value=20 Score=32.51 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=32.8
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|+|.++-=||-|-..-+..||..|+++|++|.++=-+
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 6788887888899999999999999999999988543
No 218
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.17 E-value=1.6e+02 Score=26.87 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=64.0
Q ss_pred ceeeccChhh---hhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHH--HHHHHHH-hcceecCCcccHHHH
Q 012678 334 HIVKWAPQQE---VLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNA--RYVSHVW-RVGLHLERKFERREI 407 (458)
Q Consensus 334 ~~~~~ipq~~---ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na--~~v~~~~-G~G~~l~~~~~~~~l 407 (458)
..++|+||++ +|.-|++ -+- -|--|+..|..+|.|.+= +..-|-+|+ +.++.=+ ...--+.. -+.+.+
T Consensus 241 vklPFvpqddyd~LL~lcD~--n~V-RGEDSFVRAq~agkPflW--HIYpQdentHl~KLeaFldky~~~lp~-~~a~al 314 (370)
T COG4394 241 VKLPFVPQDDYDELLWLCDF--NLV-RGEDSFVRAQLAGKPFLW--HIYPQDENTHLAKLEAFLDKYCPFLPP-NTAKAL 314 (370)
T ss_pred EEecCCcHhHHHHHHHhccc--cee-ecchHHHHHHHcCCCcEE--EecCCccccHHHHHHHHHHHhCCCCCH-HHHHHH
Confidence 3459999865 8888887 333 367899999999999852 234455555 2232200 01111111 123333
Q ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 408 ETAIRRVTVEA---EGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 408 ~~~i~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
+..-...=.++ +++.+.++...+++..++=...-+.....+++++.++++
T Consensus 315 rt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek 367 (370)
T COG4394 315 RTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEK 367 (370)
T ss_pred HHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence 33322221121 234444444444444444444455677888889888875
No 219
>PRK05920 aromatic acid decarboxylase; Validated
Probab=56.09 E-value=21 Score=30.92 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=30.7
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
+||++-..|+. ...=...+.++|.+.||+|+++.++.
T Consensus 4 krIllgITGsi-aa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 4 KRIVLAITGAS-GAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CEEEEEEeCHH-HHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 57887777764 44688999999999999999999863
No 220
>PLN02939 transferase, transferring glycosyl groups
Probab=56.00 E-value=23 Score=38.19 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCC-----CcCH-HHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 12 KKGRRVILFPLPL-----QGHI-NPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 12 ~~~~~il~~~~~~-----~GH~-~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
..+|||+|++.-. .|-+ .-.-.|.++|+++||+|.+++|.+
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 5689999987532 1222 335678999999999999999964
No 221
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=55.99 E-value=20 Score=32.53 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=33.2
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|.|.+.-=||-|-..-...||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 7788888889999999999999999999999988554
No 222
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=55.88 E-value=18 Score=32.09 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 012678 31 MLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~~ 51 (458)
-..||++|.++||+|+++...
T Consensus 29 G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHHhCCCEEEEEECc
Confidence 467889999999999999753
No 223
>PLN02470 acetolactate synthase
Probab=55.52 E-value=14 Score=38.05 Aligned_cols=92 Identities=14% Similarity=0.106 Sum_probs=53.1
Q ss_pred EcCccccC--CHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceee--------ccChhhhhc
Q 012678 277 SFGSIVVV--NVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVK--------WAPQQEVLA 346 (458)
Q Consensus 277 s~Gs~~~~--~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~ipq~~ll~ 346 (458)
+|||.... ....-+.+++.|++.|.+.|+.+.+.. ...+-+.+.+ .++++++. ++-.---..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~------~~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGA------SMEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcc------cHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHH
Confidence 46666652 333367788999999999998887754 1112222211 01122221 111100111
Q ss_pred CCCccccccccCc------hhHHHHHhhCCcccccc
Q 012678 347 HPAVGGFWTHNGW------NSTLESICEGVPMICQP 376 (458)
Q Consensus 347 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 376 (458)
+..++++++|.|- +.+.+|...++|||++.
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 2234448899884 47889999999999995
No 224
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=54.93 E-value=14 Score=31.49 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 012678 31 MLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~~ 51 (458)
-..||+++..|||+|+++..+
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-T
T ss_pred HHHHHHHHHHCCCEEEEEecC
Confidence 578999999999999999997
No 225
>PRK09620 hypothetical protein; Provisional
Probab=54.22 E-value=64 Score=28.53 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 012678 31 MLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~~ 51 (458)
-..||++|.++|++|+++...
T Consensus 32 Gs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 32 GRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 467899999999999999764
No 226
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=53.19 E-value=2.2e+02 Score=27.45 Aligned_cols=60 Identities=27% Similarity=0.212 Sum_probs=35.8
Q ss_pred cccccCchhHHHHHhhCCcccccc---cccch------hhHHHHHHHHHhcceecCC-cccHHHHHHHHHHHhccc
Q 012678 353 FWTHNGWNSTLESICEGVPMICQP---CFGDQ------LVNARYVSHVWRVGLHLER-KFERREIETAIRRVTVEA 418 (458)
Q Consensus 353 ~I~HgG~~s~~eal~~GvP~l~~P---~~~DQ------~~na~~v~~~~G~G~~l~~-~~~~~~l~~~i~~ll~~~ 418 (458)
+-|+ |..++..|+.+|.|+- +| .++|- ..|+-++... ..-+. -.+.+++..+|.++++++
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~-lp~i~s~AdglaV~~Vg~~tf~~a~~----~~d~vvvV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVT-LPKITSLADGLAVKTVGENTFELAQK----LVDRVVVVEDDEIAAAILRLFEDE 317 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeee-cccccchhcccccchhhHHHHHHHHh----cCceEEEeccHHHHHHHHHHHHhh
Confidence 4443 5678889999998863 23 22332 2233333321 11111 578899999999999884
No 227
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=52.75 E-value=22 Score=30.01 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
||++...|+ +...-...+.++|.++|++|.++.++..
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A 38 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAA 38 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHH
Confidence 577777776 4555667999999999999999998743
No 228
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=52.68 E-value=21 Score=33.24 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=30.9
Q ss_pred CEEEEEcCC-CCcCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 15 RRVILFPLP-LQGHINPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 15 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
||++|+..- |-|-.--..++|..++++|++|.+++++..
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 677777665 559999999999999999999999998743
No 229
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.04 E-value=20 Score=32.53 Aligned_cols=52 Identities=12% Similarity=0.226 Sum_probs=34.5
Q ss_pred CCccccccccCchhHHHHHh------hCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 348 PAVGGFWTHNGWNSTLESIC------EGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 348 ~~~~~~I~HgG~~s~~eal~------~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
+++ +|+-||=||++.++. .++|++.+-.. .+|-- .+.+++++.+.+.+++++
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL--~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFY--TDWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceec--ccCCHHHHHHHHHHHHcC
Confidence 455 999999999999976 47888777531 11111 134566666777777664
No 230
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=50.58 E-value=2.4e+02 Score=27.10 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred ccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhH------------HHhhcCCccee--eccChhh--
Q 012678 280 SIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGF------------LEMLDGRGHIV--KWAPQQE-- 343 (458)
Q Consensus 280 s~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~--~~ipq~~-- 343 (458)
|........+..+++++++.+.++...+.++. ....+ .....++..+. +|+||.+
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~---------~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD 258 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGR---------ALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYD 258 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCc---------cHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHH
Q ss_pred -hhcCCCccccccccCchhHHHHHhhCCccc--ccccccchhhHH--HHHHHHHhcceecCCcccHHHHHHHHHHHhccc
Q 012678 344 -VLAHPAVGGFWTHNGWNSTLESICEGVPMI--CQPCFGDQLVNA--RYVSHVWRVGLHLERKFERREIETAIRRVTVEA 418 (458)
Q Consensus 344 -ll~~~~~~~~I~HgG~~s~~eal~~GvP~l--~~P~~~DQ~~na--~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~ 418 (458)
+|-.|++ -+=.|= -|+.-|..+|+|.| +.|..-|-...= +.+.. +.-+..-....+-..+-.+.+..-...
T Consensus 259 ~LLw~cD~--NfVRGE-DSfVRAqwAgkPFvWhIYpQ~d~aHl~KL~AFL~~-y~~~~~~~~~~a~~~~~~~wN~~~~~~ 334 (374)
T PF10093_consen 259 RLLWACDF--NFVRGE-DSFVRAQWAGKPFVWHIYPQEDDAHLDKLDAFLDR-YCAGLPPEAAAALRAFWRAWNGGQDAP 334 (374)
T ss_pred HHHHhCcc--ceEecc-hHHHHHHHhCCCceEecCcCchhhHHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHhCCCCch
Q ss_pred h-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 419 E-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 419 ~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
. ...+.+....+++..+.-.+.--...+.+..|++++++
T Consensus 335 ~~w~~~~~~~~~~~~~a~~w~~~l~~~~dLa~~L~~F~~n 374 (374)
T PF10093_consen 335 DAWQDLLEHLPEWQQHARAWRQQLLAQGDLASNLVQFVEN 374 (374)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
No 231
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=50.57 E-value=27 Score=32.21 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=36.0
Q ss_pred cCCCccccccccCchhHHHHHhh----CCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 346 AHPAVGGFWTHNGWNSTLESICE----GVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 346 ~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
..+++ +|+-||-||+++++.. ++|++.+-.. .+|- +. +.+.+++.+.|.+++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGF-L~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGF-IT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccc-cc-cCCHHHHHHHHHHHHcC
Confidence 34666 9999999999999774 6677766421 1121 11 45667777777777765
No 232
>PRK06849 hypothetical protein; Provisional
Probab=50.53 E-value=33 Score=33.20 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.+|+|++.-... .-.+.+|+.|.++||+|+++...
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCC
Confidence 467888774332 35899999999999999998764
No 233
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=50.42 E-value=12 Score=30.71 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
||.++-.|..| .++|..|+++||+|++.+.+
T Consensus 1 KI~ViGaG~~G-----~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWG-----TALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHH-----HHHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHH-----HHHHHHHHHcCCEEEEEecc
Confidence 34555444444 48999999999999999886
No 234
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=50.30 E-value=38 Score=26.77 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=23.6
Q ss_pred CEEEEEcC-CCCcCH--HHHHHHHHHHHhCCCEE-EEEeC
Q 012678 15 RRVILFPL-PLQGHI--NPMLQLASILYSKGFSI-TIIHT 50 (458)
Q Consensus 15 ~~il~~~~-~~~GH~--~p~l~La~~L~~rGh~V-t~~~~ 50 (458)
||++|+-. +-+|+- .-.+.+|+.+.++||+| .++-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 56555433 333444 55888999999999984 55543
No 235
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=50.15 E-value=40 Score=28.02 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHh-CCCEEEEEe
Q 012678 27 HINPMLQLASILYS-KGFSITIIH 49 (458)
Q Consensus 27 H~~p~l~La~~L~~-rGh~Vt~~~ 49 (458)
|.....+|+++|.+ +|.++.+..
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v 24 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEV 24 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 78888999999988 555554443
No 236
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=49.91 E-value=34 Score=29.08 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCCC-CCCCCCCCceEEecC
Q 012678 31 MLQLASILYSKGFSITIIHTNFNS-PNPSNYPHFSFNSIS 69 (458)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~~ 69 (458)
.-.|+..|+++||+|++.+..... .....+.|++...+|
T Consensus 23 ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 23 VEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 456888888899999999875443 334445778887776
No 237
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=49.81 E-value=45 Score=33.11 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCCcCHHH------------HHHHHHHHHhCCCEEEEEeCCC
Q 012678 13 KGRRVILFPLPLQGHINP------------MLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
+..||++...|++=.+.| -..||+++..||++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 456888888887776666 4789999999999999999864
No 238
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=49.71 E-value=12 Score=31.64 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=40.4
Q ss_pred CCCccccccccCchhHHHHHhhCCccccccccc-c----------------------hhhHHHHHHHHHhcceecCCccc
Q 012678 347 HPAVGGFWTHNGWNSTLESICEGVPMICQPCFG-D----------------------QLVNARYVSHVWRVGLHLERKFE 403 (458)
Q Consensus 347 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~-D----------------------Q~~na~~v~~~~G~G~~l~~~~~ 403 (458)
+..++++|++||...+..... ++|+|-+|..+ | .......+.+.+|+-+..-.--+
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~ 110 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDS 110 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESS
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEECC
Confidence 344444999999998888877 99999999753 2 33334555543333332222346
Q ss_pred HHHHHHHHHHHhcc
Q 012678 404 RREIETAIRRVTVE 417 (458)
Q Consensus 404 ~~~l~~~i~~ll~~ 417 (458)
.+++...|+++..+
T Consensus 111 ~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 111 EEEIEAAIKQAKAE 124 (176)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 77888888887654
No 239
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=49.50 E-value=83 Score=25.53 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCCccccccccC------chhHHHHHhhCCcccccccc
Q 012678 347 HPAVGGFWTHNG------WNSTLESICEGVPMICQPCF 378 (458)
Q Consensus 347 ~~~~~~~I~HgG------~~s~~eal~~GvP~l~~P~~ 378 (458)
++.+ +++|+| .+.+.+|...++|+|++.-.
T Consensus 59 ~~~v--~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~ 94 (155)
T cd07035 59 KPGV--VLVTSGPGLTNAVTGLANAYLDSIPLLVITGQ 94 (155)
T ss_pred CCEE--EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 3455 888866 45788999999999999643
No 240
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=49.38 E-value=2e+02 Score=26.01 Aligned_cols=57 Identities=11% Similarity=0.124 Sum_probs=38.3
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESL 72 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (458)
.+|||+++.+++...-. .++..|.++|++|.++..............+..+-+|-+.
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGf 58 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGF 58 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCC
Confidence 46899999999886443 5578888899999988764211111222456777777664
No 241
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=49.22 E-value=36 Score=31.21 Aligned_cols=74 Identities=12% Similarity=0.265 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHH
Q 012678 284 VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTL 363 (458)
Q Consensus 284 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~ 363 (458)
.+.+..+.+.+|+...+.+.||...++.. .. ++.++++...+-.+++. +|-..-..+++
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g-----------a~--------rlL~~ld~~~~~~~pK~--~iGySDiTaL~ 104 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYG-----------AN--------RLLPYLDYDLIRANPKI--FVGYSDITALH 104 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCC-----------HH--------HhhhhCCHHHHhhCCeE--EEEecHHHHHH
Confidence 45666888999999999999999987641 11 34555555555566666 77666666666
Q ss_pred HHHhh--CCcccccccc
Q 012678 364 ESICE--GVPMICQPCF 378 (458)
Q Consensus 364 eal~~--GvP~l~~P~~ 378 (458)
-+++. |++.+-=|+.
T Consensus 105 ~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 105 LALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHHhcCceEEECccc
Confidence 66543 5655555543
No 242
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=49.11 E-value=15 Score=32.97 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 29 NPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 29 ~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
.-+-.|+++|+++||+|++++|..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 346789999999999999999863
No 243
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=48.89 E-value=19 Score=30.57 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
||++-..|+.|-.. ...|.+.|.++|++|.++.++.
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~ 36 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDW 36 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECcc
Confidence 35555555555544 4889999999999999999973
No 244
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=48.39 E-value=2.3e+02 Score=29.98 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=58.7
Q ss_pred EEEEEcCC-CCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHH-hc
Q 012678 16 RVILFPLP-LQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLND-KC 93 (458)
Q Consensus 16 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 93 (458)
.|.+.+.. ..|-..-.+.|++.|.++|.+|.++=|-.. + | .. .......+.. ..
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~--------~------p--~~--------~~~~~~~~~~~~~ 59 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQ--------P------P--LT--------MSEVEALLASGQL 59 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCccc--------C------C--CC--------HHHHHHHHhccCC
Confidence 35555333 458899999999999999999999865311 1 1 00 0000000000 11
Q ss_pred ChhHHHHHHHHhhCCCCCCCeeEEEecCchh---------hHHHHHHHcCCCeEEEecch
Q 012678 94 VVPFQDCLAKLISNGDQEEPVTCLITDAIWH---------FAQTVADTLRLPRIVLRTSS 144 (458)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~---------~~~~~A~~lgiP~v~~~~~~ 144 (458)
...+..+++.+.... .+.|+||.|.... ....+|+.++.|.+.+...-
T Consensus 60 ~~~~~~I~~~~~~l~---~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 60 DELLEEIVARYHALA---KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred hHHHHHHHHHHHHhc---cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 122222333332211 4689999776431 24678999999999987664
No 245
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=47.90 E-value=38 Score=32.27 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=53.4
Q ss_pred cEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCch-hHHH-hhcCCcc---------------
Q 012678 272 SVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPK-GFLE-MLDGRGH--------------- 334 (458)
Q Consensus 272 ~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~~~--------------- 334 (458)
.+++.+.||.....+. ..+.+.|++.++++.|......... +-+|+ ++.- ..+....
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e~----~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 76 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIEK----TIIEKENIPYYSISSGKLRRYFDLKNIKDPFLV 76 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCcccc----ccCcccCCcEEEEeccCcCCCchHHHHHHHHHH
Confidence 4778888887763332 3456777777889999875543221 11221 1100 0000000
Q ss_pred eeeccChhhhhc--CCCccccccccCchh---HHHHHhhCCccccc
Q 012678 335 IVKWAPQQEVLA--HPAVGGFWTHNGWNS---TLESICEGVPMICQ 375 (458)
Q Consensus 335 ~~~~ipq~~ll~--~~~~~~~I~HgG~~s---~~eal~~GvP~l~~ 375 (458)
+..+.--..++. +|++ +|++||+=| ...|...|+|+++.
T Consensus 77 ~~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 77 MKGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 000111112344 5677 999999986 89999999999774
No 246
>PRK14098 glycogen synthase; Provisional
Probab=47.46 E-value=33 Score=34.40 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=28.5
Q ss_pred CEEEEEcCCCC------cCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 15 RRVILFPLPLQ------GHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 15 ~~il~~~~~~~------GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
|||++++.-.. |=-.-+-.|.++|+++||+|.+++|.+
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 99999875321 222335678899999999999999953
No 247
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=47.44 E-value=95 Score=26.81 Aligned_cols=141 Identities=10% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhc-CCcceeeccChhhhhcCC
Q 012678 270 AKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD-GRGHIVKWAPQQEVLAHP 348 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ipq~~ll~~~ 348 (458)
++.++.|..|.++ ...+..|.+.+..+.++ .+. ..+.+.+..+ ..+.......+..-+..+
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~a 71 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE----------LTENLVKLVEEGKIRWKQKEFEPSDIVDA 71 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC----------CCHHHHHHHhCCCEEEEecCCChhhcCCc
Confidence 5678888777655 33455555567665544 322 2233222222 122233333345556777
Q ss_pred CccccccccCchhHHHHHh----hCCcccccccccchhhHH-----HHHHHHHhcceecCC----cccHHHHHHHHHHHh
Q 012678 349 AVGGFWTHNGWNSTLESIC----EGVPMICQPCFGDQLVNA-----RYVSHVWRVGLHLER----KFERREIETAIRRVT 415 (458)
Q Consensus 349 ~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na-----~~v~~~~G~G~~l~~----~~~~~~l~~~i~~ll 415 (458)
++ +|.--+...+.+.++ .++++-+ .|.+..+ ..+.+. ++-+.+.+ ..-+..|++.|.+++
T Consensus 72 dl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~ 144 (202)
T PRK06718 72 FL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALY 144 (202)
T ss_pred eE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHc
Confidence 77 888777666666554 4444332 3443333 223332 33333332 233455777777766
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 012678 416 VEAEGQEMRERIMHLKEKLEL 436 (458)
Q Consensus 416 ~~~~~~~~~~~a~~~~~~~~~ 436 (458)
.. +...+-+.+.+++..+++
T Consensus 145 ~~-~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 145 DE-SYESYIDFLYECRQKIKE 164 (202)
T ss_pred ch-hHHHHHHHHHHHHHHHHH
Confidence 32 235666667777776664
No 248
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=47.05 E-value=25 Score=32.77 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+.+|||+++-.|+.| ..+|..|++.||+|+++...
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 345899999777655 45678899999999999874
No 249
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.79 E-value=29 Score=31.89 Aligned_cols=56 Identities=9% Similarity=0.012 Sum_probs=36.4
Q ss_pred hhcCCCccccccccCchhHHHHHh----hCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 344 VLAHPAVGGFWTHNGWNSTLESIC----EGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 344 ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
+...+++ +|+-||=||++.+.. .++|++.+-... +|- |. +.+++++.+++.+++++
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lGF-Lt-~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAGH--------------LGF-LT-DITVDEAEKFFQAFFQG 120 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCCC--------------ccc-CC-cCCHHHHHHHHHHHHcC
Confidence 3345666 999999999998865 367887664210 111 11 35667777777777765
No 250
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=46.54 E-value=41 Score=28.93 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=30.5
Q ss_pred CCCEEEEEcCC--CCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLP--LQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
..+|++.++.. +-|-..-...||..|+++|++|.++-.+
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 33776666654 5578888999999999999999888654
No 251
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.54 E-value=44 Score=26.67 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=34.4
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+.+|++-+..+.+|-.----++..|...|++|......
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~ 38 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVL 38 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCC
Confidence 35899999999999999999999999999999998764
No 252
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.79 E-value=32 Score=31.76 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=38.8
Q ss_pred hhhcCCCccccccccCchhHHHHHh----hCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 343 EVLAHPAVGGFWTHNGWNSTLESIC----EGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 343 ~ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
.+...+++ +|+=||=||++.+.. .++|++.+-... +|- |. +.+++++.+++.+++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lGF-Lt-~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTGR--------------LGF-LA-TVSKEEIEETIDELLNG 120 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecCC--------------CCc-cc-ccCHHHHHHHHHHHHcC
Confidence 33345667 999999999999977 377887764211 121 11 46678888888888876
No 253
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=45.77 E-value=55 Score=32.65 Aligned_cols=118 Identities=18% Similarity=0.091 Sum_probs=75.1
Q ss_pred HhhcCCcceeeccC-hhh--hhcCCCcccccc-----ccCchhHHHHHhhCCccccccccc------chhhHHHHHHHHH
Q 012678 327 EMLDGRGHIVKWAP-QQE--VLAHPAVGGFWT-----HNGWNSTLESICEGVPMICQPCFG------DQLVNARYVSHVW 392 (458)
Q Consensus 327 ~~~~~~~~~~~~ip-q~~--ll~~~~~~~~I~-----HgG~~s~~eal~~GvP~l~~P~~~------DQ~~na~~v~~~~ 392 (458)
++.++++.+.-|.+ ... +..-+++ ++- -||. |=++|+++|.+-|+.+..+ |-..++ ....
T Consensus 345 ~~~~~~~~~~i~~~~~la~~i~agaD~--~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~- 418 (487)
T COG0297 345 SRHPGRVLVVIGYDEPLAHLIYAGADV--ILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGV- 418 (487)
T ss_pred HhcCceEEEEeeecHHHHHHHHhcCCE--EEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCc-
Confidence 34455556665544 333 4455554 554 3554 5578999999888888764 322222 4554
Q ss_pred hcceecCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012678 393 RVGLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 456 (458)
Q Consensus 393 G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (458)
|.|..+.. .+++++..++.+.+. -|++.-..++...+.++...-+-++.+++-++..+
T Consensus 419 gtGf~f~~-~~~~~l~~al~rA~~-----~y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~ 476 (487)
T COG0297 419 GTGFLFLQ-TNPDHLANALRRALV-----LYRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYK 476 (487)
T ss_pred eeEEEEec-CCHHHHHHHHHHHHH-----HhhCCHHHHHHHHHhhcccccCchhHHHHHHHHHH
Confidence 88888887 499999999998883 45555454566666555555666667766666544
No 254
>PRK06321 replicative DNA helicase; Provisional
Probab=45.49 E-value=95 Score=30.95 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=30.3
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHh-CCCEEEEEeCCC
Q 012678 17 VILFPLPLQGHINPMLQLASILYS-KGFSITIIHTNF 52 (458)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~ 52 (458)
+++-..|+.|-..-++.+|...+. .|+.|.|++-+-
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEM 265 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEM 265 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 566777899999999999999874 599999998763
No 255
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=44.92 E-value=31 Score=29.30 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=30.8
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHh-CCCEEEEEeCCCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYS-KGFSITIIHTNFN 53 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~ 53 (458)
+||++...|+.| ..=...|+++|.+ .||+|.++.++..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A 40 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAA 40 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHH
Confidence 368877777766 6669999999999 4999999999733
No 256
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=44.91 E-value=91 Score=29.52 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCC-EEEEEeC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGF-SITIIHT 50 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~ 50 (458)
..||+++-.++.| ..+|+.|++.|+ +++++-.
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 4689999888766 678999999998 6666643
No 257
>PRK04946 hypothetical protein; Provisional
Probab=44.62 E-value=24 Score=29.85 Aligned_cols=57 Identities=18% Similarity=0.104 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccCh-hhhhcCCCccccccccCchhHH
Q 012678 289 FLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQ-QEVLAHPAVGGFWTHNGWNSTL 363 (458)
Q Consensus 289 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq-~~ll~~~~~~~~I~HgG~~s~~ 363 (458)
+..++......+.+++.++.+.+ .++..+ .+..|+.| ..|+..+++ --.|||.|.+.
T Consensus 112 L~~fl~~a~~~g~r~v~IIHGkG-----------~gvLk~-----~V~~wL~q~~~V~af~~A--~~~~GG~GA~~ 169 (181)
T PRK04946 112 LGALIAACRKEHVFCACVMHGHG-----------KHILKQ-----QTPLWLAQHPDVMAFHQA--PKEWGGDAALL 169 (181)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCC-----------HhHHHH-----HHHHHHcCCchhheeecc--CcccCCceEEE
Confidence 44455455556888888777654 233322 35688875 457877777 78899998653
No 258
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=44.36 E-value=1.6e+02 Score=25.37 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhC--CCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~ 51 (458)
|||+++..+. |+.. .+|.+.+.+. +++|.++.+.
T Consensus 2 ~ki~vl~sg~-gs~~--~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGN-GSNL--QAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCC-ChhH--HHHHHHHHcCCCCcEEEEEEec
Confidence 7899999987 4433 3566667665 4778876554
No 259
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.43 E-value=35 Score=31.69 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=37.1
Q ss_pred cCCCccccccccCchhHHHHHhh----CCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 346 AHPAVGGFWTHNGWNSTLESICE----GVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 346 ~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
..+++ +|+=||=||++.+... ++|++.+-.. .+|- -.+.+++++.+++.+++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGF--Lt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGF--LTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcc--cccCCHHHHHHHHHHHHcC
Confidence 34566 9999999999999764 7788777421 1111 1145677888888888775
No 260
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=43.34 E-value=40 Score=30.39 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+...++|+-.+|.|-..=..+||.+|.++|+.|+|++.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 556889998899899999999999999889999999885
No 261
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=42.87 E-value=37 Score=28.66 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=26.3
Q ss_pred HHHHHhhCCCCCCCeeEEEecCchhh--HHHHHHHcCCCeEEEec
Q 012678 100 CLAKLISNGDQEEPVTCLITDAIWHF--AQTVADTLRLPRIVLRT 142 (458)
Q Consensus 100 ~l~~l~~~~~~~~~pDlvI~D~~~~~--~~~~A~~lgiP~v~~~~ 142 (458)
-+++++. .+||+||....... ....-+..|||++.+..
T Consensus 61 n~E~ll~-----l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 61 NVELIVA-----LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CHHHHhc-----cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 5667776 68999998654322 34445778999988753
No 262
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=42.31 E-value=5.7 Score=20.74 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=13.6
Q ss_pred CchhHHHHHhhCCcccc
Q 012678 358 GWNSTLESICEGVPMIC 374 (458)
Q Consensus 358 G~~s~~eal~~GvP~l~ 374 (458)
|.|++.-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67889999999988775
No 263
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.45 E-value=39 Score=31.16 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=37.9
Q ss_pred hhcCCCccccccccCchhHHHHHh----hCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 344 VLAHPAVGGFWTHNGWNSTLESIC----EGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 344 ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
+...+++ +|+=||=||++.+.. +++|++.+-... +|- +. .++++++.+++.+++++
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~--------------lGF-l~-~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGN--------------LGF-LT-DLDPDNALQQLSDVLEG 119 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCC--------------CCc-cc-ccCHHHHHHHHHHHHcC
Confidence 3345666 999999999999975 367877664211 121 11 45678888888888875
No 264
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=41.43 E-value=95 Score=26.53 Aligned_cols=119 Identities=11% Similarity=0.078 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHHHH
Q 012678 286 VTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLES 365 (458)
Q Consensus 286 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~ea 365 (458)
..+-..+.+.+.+.+..+|..-+. ..-+.+.|.++.++++ |=-||++ .=.++|..+..+|
T Consensus 65 ~~~d~~l~~~l~~~~~dlvvLAGy--------MrIL~~~fl~~~~grI----------lNIHPSL--LP~f~G~h~~~~A 124 (200)
T COG0299 65 EAFDRALVEALDEYGPDLVVLAGY--------MRILGPEFLSRFEGRI----------LNIHPSL--LPAFPGLHAHEQA 124 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcch--------HHHcCHHHHHHhhcce----------EecCccc--ccCCCCchHHHHH
Confidence 334556889999888776554432 3346666655443322 1248888 8899999999999
Q ss_pred HhhCCccccccccc--chhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 012678 366 ICEGVPMICQPCFG--DQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLK 431 (458)
Q Consensus 366 l~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~ 431 (458)
+.+|+..-..-++. +..+-+-.+.. ..+.+...-|.|.|.+.|.+.=. .-|-+..+.+.
T Consensus 125 ~~aG~k~sG~TVH~V~e~vD~GpII~Q---~~Vpv~~~Dt~etl~~RV~~~Eh----~lyp~~v~~~~ 185 (200)
T COG0299 125 LEAGVKVSGCTVHFVTEGVDTGPIIAQ---AAVPVLPGDTAETLEARVLEQEH----RLYPLAVKLLA 185 (200)
T ss_pred HHcCCCccCcEEEEEccCCCCCCeEEE---EeeeecCCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 99999986665432 22222222221 12222233488888888877432 34555444444
No 265
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.41 E-value=36 Score=31.44 Aligned_cols=56 Identities=14% Similarity=0.044 Sum_probs=38.0
Q ss_pred hhcCCCccccccccCchhHHHHHh----hCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 344 VLAHPAVGGFWTHNGWNSTLESIC----EGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 344 ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
+...+++ +|+=||=||++.+.. .++|++.+-... +|--. +++++++.+++.+++++
T Consensus 65 ~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lGFL~--~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 65 LGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQGH--------------LGFLT--QIPREYMTDKLLPVLEG 124 (296)
T ss_pred cCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecCC--------------CeEee--ccCHHHHHHHHHHHHcC
Confidence 3335667 999999999999965 378887774210 12111 46677888888888765
No 266
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=41.35 E-value=42 Score=32.57 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
...+||++...|+. ...=...+.++|.++|++|.++.++..
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A 44 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAA 44 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 34568888888874 555789999999999999999998743
No 267
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=41.31 E-value=59 Score=25.87 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
++.||++-+.++.+|-.----++..|...|++|.-....
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 467999999999999999999999999999999987653
No 268
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=41.16 E-value=42 Score=30.35 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=24.4
Q ss_pred CcEEEEEcCccccCCHH-HHHHHHHHHHhC--CCceEEEEcC
Q 012678 271 KSVMYVSFGSIVVVNVT-EFLEIAWGLANS--RVPFLWVVRP 309 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~-~~~~~~~al~~~--~~~~i~~~~~ 309 (458)
|.++++||||......+ .+..+.+.+++. ++.+.|.+..
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 35889999998775444 677777777763 6778888754
No 269
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=40.97 E-value=40 Score=29.92 Aligned_cols=38 Identities=8% Similarity=-0.040 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhC--CCEEEEEeCCCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFN 53 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~ 53 (458)
||++--.|+.+=+.-.+.|.+.|.++ ||+|.++.++..
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a 40 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAG 40 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhH
Confidence 35555555533346899999999999 999999998743
No 270
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=40.84 E-value=1.8e+02 Score=29.20 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=25.1
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhC--CCEEEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSK--GFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~ 50 (458)
||||++-.+++.| +|++.|++. |++|.++..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 7999988888777 578888776 999888854
No 271
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=40.80 E-value=35 Score=21.23 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 012678 403 ERREIETAIRRVTVEAEGQEMRERIMHLK 431 (458)
Q Consensus 403 ~~~~l~~~i~~ll~~~~~~~~~~~a~~~~ 431 (458)
|+++|.+||..+.++. -++++.|++++
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHHC
Confidence 5789999999999763 46777776654
No 272
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=40.49 E-value=33 Score=31.66 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=24.7
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
|||+++-.|..| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 677777666554 5678889999999999986
No 273
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=40.47 E-value=64 Score=28.63 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=25.5
Q ss_pred eeEEE-ecCch-hhHHHHHHHcCCCeEEEecchH
Q 012678 114 VTCLI-TDAIW-HFAQTVADTLRLPRIVLRTSSI 145 (458)
Q Consensus 114 pDlvI-~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 145 (458)
||+++ .|+.. --|..=|.++|||+|.+.-..+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 88875 67754 7788889999999999877644
No 274
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=40.33 E-value=49 Score=32.22 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCCEEEEEcC--CCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPL--PLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
++|+|+.+.. ||.|-..-.+.||..|+.+|+.|.++=.+
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 4667666654 67799999999999999999999998543
No 275
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=40.28 E-value=69 Score=24.76 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=32.8
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
||++..-++.|-......+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999887753
No 276
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=40.24 E-value=49 Score=28.46 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
-++||.|-..+|-|-...|+.=|++|.++|.+|++-.-+
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 367999999999999999999999999999999986543
No 277
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=40.09 E-value=57 Score=30.14 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=31.5
Q ss_pred CCCE-EEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRR-VILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~-il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.+|| |.|+.-||-|-..-...||-.|+++|++|.++-.+
T Consensus 2 ~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 2 SKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred CcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 3555 44556667799999999999999999999999554
No 278
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=40.00 E-value=2.1e+02 Score=23.44 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=24.3
Q ss_pred cCCCCcCHHHHHHHHHHHHhCCCEEEEE
Q 012678 21 PLPLQGHINPMLQLASILYSKGFSITII 48 (458)
Q Consensus 21 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 48 (458)
+.++-|-..-.+.|++.|.++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4456688889999999999999999886
No 279
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=39.95 E-value=2e+02 Score=23.26 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=30.1
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|.+.-.++.|--..+..++..|.++|++|.++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 56666778899999999999999999999998765
No 280
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=39.84 E-value=62 Score=26.71 Aligned_cols=29 Identities=14% Similarity=0.112 Sum_probs=24.7
Q ss_pred EEEEEcCccccCCHHHHHHHHHHHHhCCC
Q 012678 273 VMYVSFGSIVVVNVTEFLEIAWGLANSRV 301 (458)
Q Consensus 273 ~i~vs~Gs~~~~~~~~~~~~~~al~~~~~ 301 (458)
.+|+++||....+...++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 68999999988777778888888888764
No 281
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.83 E-value=59 Score=27.12 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=27.4
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
.+..+|++++.++. .=-=.+.+|+.|.++|++|+++..
T Consensus 23 ~~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp CTT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 45678999988862 223378899999999999999443
No 282
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=39.68 E-value=41 Score=28.24 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=26.9
Q ss_pred EEEEcCCCCcCHHH-HHHHHHHHHh-CCCEEEEEeCCCC
Q 012678 17 VILFPLPLQGHINP-MLQLASILYS-KGFSITIIHTNFN 53 (458)
Q Consensus 17 il~~~~~~~GH~~p-~l~La~~L~~-rGh~Vt~~~~~~~ 53 (458)
|+..-.++ ||... ...+.++|++ +||+|.++.++..
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A 39 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAG 39 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhH
Confidence 44444444 78866 8899999985 5999999998743
No 283
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=39.51 E-value=1.9e+02 Score=25.98 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=33.4
Q ss_pred hhhhhcCCCccccc--c--ccCchhHHHHHhhCCcccccccccchhh--HHHHHHHHHhcceecCC
Q 012678 341 QQEVLAHPAVGGFW--T--HNGWNSTLESICEGVPMICQPCFGDQLV--NARYVSHVWRVGLHLER 400 (458)
Q Consensus 341 q~~ll~~~~~~~~I--~--HgG~~s~~eal~~GvP~l~~P~~~DQ~~--na~~v~~~~G~G~~l~~ 400 (458)
..+++..+++ +| | +...--+..|+.+|+|+++-|....+.. .-.... + ++++.+..
T Consensus 54 l~~ll~~~Dv--Vid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa-~-~~~v~~s~ 115 (257)
T PRK00048 54 LEAVLADADV--LIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAA-K-KIPVVIAP 115 (257)
T ss_pred HHHhccCCCE--EEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh-c-CCCEEEEC
Confidence 3445655666 65 2 2224566778999999999876543322 222222 3 77777765
No 284
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.47 E-value=1.3e+02 Score=29.34 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=35.9
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (458)
.++-.|+++-.=+.|-.-.+-.||+.|.++|+.|.+++.+-..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 3345677777778899999999999999999999999987444
No 285
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=39.39 E-value=2.4e+02 Score=24.04 Aligned_cols=34 Identities=9% Similarity=0.209 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCC--EEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGF--SITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh--~Vt~~~~~ 51 (458)
|||+++..+..+- +..+.+.+.+.++ +|.++.+.
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEEC
Confidence 6888888877433 3466666766655 67765554
No 286
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=39.27 E-value=1.5e+02 Score=29.07 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=32.8
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
..|+|+-.++.|-.--+..||..|.++|+.|.+++.+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 456666667889999999999999999999999988643
No 287
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=39.09 E-value=43 Score=32.35 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
.+||++...|+ +...-...+.+.|.+.|++|.++.++..
T Consensus 3 ~k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A 41 (390)
T TIGR00521 3 NKKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAA 41 (390)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 46888888777 4456689999999999999999988743
No 288
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.06 E-value=3.9e+02 Score=26.31 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.0
Q ss_pred CCeeEEEecCchhhHHHHHHHcCCCeEEEe
Q 012678 112 EPVTCLITDAIWHFAQTVADTLRLPRIVLR 141 (458)
Q Consensus 112 ~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 141 (458)
.+||++|.... ...+|.++|+|++.+.
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 57999998863 5678999999998654
No 289
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=38.88 E-value=39 Score=31.41 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
++|||.|+-.|..| ..+|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46899998665544 57899999999999988653
No 290
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=38.64 E-value=40 Score=31.45 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=29.0
Q ss_pred CEEEEEcCCCC---cCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQ---GHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~---GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|||+|+.-|-. -+......|.++..+|||+|.++.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 67888876431 34456789999999999999999885
No 291
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=38.62 E-value=2.5e+02 Score=24.31 Aligned_cols=144 Identities=12% Similarity=0.120 Sum_probs=68.6
Q ss_pred CCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhc-CCcceeeccChhhhhcCC
Q 012678 270 AKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD-GRGHIVKWAPQQEVLAHP 348 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ipq~~ll~~~ 348 (458)
+++++.|..|..+ ..-+..|.+.+..+.++-+ . ..+.+..-.. .++....--.+...+..+
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp-~----------~~~~l~~l~~~~~i~~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAE-E----------LESELTLLAEQGGITWLARCFDADILEGA 70 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcC-C----------CCHHHHHHHHcCCEEEEeCCCCHHHhCCc
Confidence 4678888776654 2334555556776654432 2 1122221111 122332111233456667
Q ss_pred CccccccccCchhHHH-----HHhhCCccc--ccccccchhhHHHHHHHHHhcceecCC----cccHHHHHHHHHHHhcc
Q 012678 349 AVGGFWTHNGWNSTLE-----SICEGVPMI--CQPCFGDQLVNARYVSHVWRVGLHLER----KFERREIETAIRRVTVE 417 (458)
Q Consensus 349 ~~~~~I~HgG~~s~~e-----al~~GvP~l--~~P~~~DQ~~na~~v~~~~G~G~~l~~----~~~~~~l~~~i~~ll~~ 417 (458)
++ +|..-|...+.+ |-..|+|+- --|-..| +..-..+++. ++-+.+.+ ..-+..|++.|.+++.+
T Consensus 71 ~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~~l~~ 146 (205)
T TIGR01470 71 FL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVLARLLRERIETLLPP 146 (205)
T ss_pred EE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHHhcch
Confidence 76 888877664443 445688883 3332222 1122223332 33333332 23345677777777743
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 012678 418 AEGQEMRERIMHLKEKLEL 436 (458)
Q Consensus 418 ~~~~~~~~~a~~~~~~~~~ 436 (458)
+...+-+.+.+++..+++
T Consensus 147 -~~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 147 -SLGDLATLAATWRDAVKK 164 (205)
T ss_pred -hHHHHHHHHHHHHHHHHh
Confidence 124455555555555553
No 292
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=38.36 E-value=75 Score=27.44 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=32.2
Q ss_pred cCCCCEEEEEcC--CCCcCHHHHHHHHHHHHh-CCCEEEEEeCC
Q 012678 11 QKKGRRVILFPL--PLQGHINPMLQLASILYS-KGFSITIIHTN 51 (458)
Q Consensus 11 ~~~~~~il~~~~--~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~ 51 (458)
..+.+|++.++. ++.|--.-...||..|++ +|++|.++-.+
T Consensus 31 ~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 31 RKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred cCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 344678777765 577888889999999997 69999998654
No 293
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=38.11 E-value=46 Score=30.51 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=25.4
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+||.|+-.+..| .++|+.|.++||+|++.--.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 467777666655 58999999999999998653
No 294
>PLN00016 RNA-binding protein; Provisional
Probab=37.94 E-value=42 Score=32.26 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.++|+++.--+.|+=+=-..|+++|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 35677662222233333456789999999999998864
No 295
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=37.74 E-value=62 Score=30.13 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHH
Q 012678 284 VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTL 363 (458)
Q Consensus 284 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~ 363 (458)
.+.+....+.+|+.....+.||.+.++.. .. ++.++++...+-.||+. ||-..-..+++
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g-----------~~--------rlL~~lD~~~i~~~PK~--fiGySDiTaL~ 108 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGDD-----------SN--------ELLPYLDYELIKKNPKI--FIGYSDITALH 108 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcccC-----------Hh--------hhhhhcCHHHHhhCCCE--EEeccHHHHHH
Confidence 35566888999999999999999887641 11 45555565555566665 66666666666
Q ss_pred HHHh--hCCccccccc
Q 012678 364 ESIC--EGVPMICQPC 377 (458)
Q Consensus 364 eal~--~GvP~l~~P~ 377 (458)
-+++ .|++.+-=|.
T Consensus 109 ~al~~~~g~~t~hGp~ 124 (308)
T cd07062 109 LAIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHHhcCCeEEECcc
Confidence 6653 2555444444
No 296
>COG2733 Predicted membrane protein [Function unknown]
Probab=37.74 E-value=98 Score=29.49 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=28.2
Q ss_pred Ccc-cccccccchhhHHHHHHHHHhcceecCC-cccHHHHHHHHHH
Q 012678 370 VPM-ICQPCFGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRR 413 (458)
Q Consensus 370 vP~-l~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~~i~~ 413 (458)
.|+ |.+|+++=-+.|-.++-+ ++|..+.. -++++.+.+++++
T Consensus 64 ~PlgipipHTAIIprNKdri~e--~l~~FV~~~fLs~e~i~~Kl~~ 107 (415)
T COG2733 64 HPLGIPIPHTAIIPRNKDRIGE--NLGQFVQNNFLSPESINEKLRR 107 (415)
T ss_pred cCCCCCCcchhhccccHHHHHH--HHHHHHHHcccChHHHHHHHHh
Confidence 565 456677777777777776 67766665 5677776666654
No 297
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=37.58 E-value=40 Score=26.76 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.1
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 26 GHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 26 GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
-.+--.+=|+..|.++||+|++.+++
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~np 36 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNP 36 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-H
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCH
Confidence 44556778899999999999999987
No 298
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=37.54 E-value=74 Score=25.37 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=28.4
Q ss_pred CEEEE-EcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVIL-FPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~-~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
+|+.+ +.++..--+.|..-++...++.|++|+++.+
T Consensus 3 ~k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 3 KKLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 34333 3445558889999999999999999999988
No 299
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=37.49 E-value=86 Score=27.70 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=30.3
Q ss_pred CCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCC
Q 012678 22 LPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN 56 (458)
Q Consensus 22 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 56 (458)
=||-|-.--++.||.+|+++|-.|+++=.+.+.+.
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 35779999999999999999999999988766544
No 300
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=37.42 E-value=2.5e+02 Score=27.08 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=53.4
Q ss_pred hhhhcCCCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcc-eecCC-cccHHHHHHHHHHHhccch
Q 012678 342 QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVG-LHLER-KFERREIETAIRRVTVEAE 419 (458)
Q Consensus 342 ~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G-~~l~~-~~~~~~l~~~i~~ll~~~~ 419 (458)
..++.++++ +|. .=+-|+.-|++.|+|.+++- =|+.+....++ +|+- ..++. .++.+.+.+.+.+.+.+.
T Consensus 280 ~~~l~~~dl--~Vg-~R~HsaI~al~~g~p~i~i~---Y~~K~~~l~~~-~gl~~~~~~i~~~~~~~l~~~~~e~~~~~- 351 (385)
T COG2327 280 GGILAACDL--IVG-MRLHSAIMALAFGVPAIAIA---YDPKVRGLMQD-LGLPGFAIDIDPLDAEILSAVVLERLTKL- 351 (385)
T ss_pred HHHhccCce--EEe-ehhHHHHHHHhcCCCeEEEe---ecHHHHHHHHH-cCCCcccccCCCCchHHHHHHHHHHHhcc-
Confidence 446778886 663 55778889999999998883 34444566666 5764 33444 799999999999888763
Q ss_pred hHHHHHH
Q 012678 420 GQEMRER 426 (458)
Q Consensus 420 ~~~~~~~ 426 (458)
+..+++
T Consensus 352 -~~~~~~ 357 (385)
T COG2327 352 -DELRER 357 (385)
T ss_pred -HHHHhh
Confidence 444444
No 301
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=36.77 E-value=2.6e+02 Score=23.65 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=28.7
Q ss_pred CCcccccccc----cch---hhHHHHHHHHHhcceecCC-------------cccHHHHHHHHHHHhc
Q 012678 369 GVPMICQPCF----GDQ---LVNARYVSHVWRVGLHLER-------------KFERREIETAIRRVTV 416 (458)
Q Consensus 369 GvP~l~~P~~----~DQ---~~na~~v~~~~G~G~~l~~-------------~~~~~~l~~~i~~ll~ 416 (458)
++|++++|-. +.. ..|-.++++ +|+=+.-.. -.+.+++.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 8999999964 333 445566666 465433321 2467777777766654
No 302
>PRK10867 signal recognition particle protein; Provisional
Probab=36.72 E-value=1.8e+02 Score=28.63 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=32.4
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhC-CCEEEEEeCCCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSK-GFSITIIHTNFN 53 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~ 53 (458)
.-|+++-.++.|-..-...||..|+++ |+.|.+++.+..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 346666666789999999999999999 999999988643
No 303
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=36.58 E-value=58 Score=27.70 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|||.++ |.||+ -+.+|-.|+++||+|+.+-..
T Consensus 1 M~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVI---GLGYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEE---CCCcc--hHHHHHHHHhCCCEEEEEeCC
Confidence 677777 44555 377888999999999998654
No 304
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=36.54 E-value=46 Score=22.76 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 012678 31 MLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~~ 51 (458)
-+..|..|+++|++|+++=..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 467899999999999999653
No 305
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=36.39 E-value=42 Score=25.73 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=37.1
Q ss_pred HhhCCcccccccccchhhHHHHHHHHHhcceec-----------CC----cccHHHHHHHHHHHhc
Q 012678 366 ICEGVPMICQPCFGDQLVNARYVSHVWRVGLHL-----------ER----KFERREIETAIRRVTV 416 (458)
Q Consensus 366 l~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l-----------~~----~~~~~~l~~~i~~ll~ 416 (458)
++|+.++...|..+|.-.|+-|+.+ |.-.-+ .+ +.+.|+++.+|+-+..
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRiaq--G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M~~ 123 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIAQ--GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFMAA 123 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHHh--chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHHHh
Confidence 5677889999999999999999975 443322 22 4789999988886653
No 306
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=36.23 E-value=87 Score=26.44 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=24.3
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCE--EEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFS--ITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~--Vt~~~~ 50 (458)
|||+|+.+++. ..+..+.++|.+++|+ +..+.+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit 35 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVIT 35 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEec
Confidence 79999977764 4466678899999997 444444
No 307
>PRK03094 hypothetical protein; Provisional
Probab=36.11 E-value=35 Score=24.36 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCEEEEEeC
Q 012678 31 MLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~ 50 (458)
+..+.+.|.++||+|.=+-.
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 45789999999999987654
No 308
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.88 E-value=46 Score=30.90 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=37.8
Q ss_pred hcCCCccccccccCchhHHHHHhh----CCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 345 LAHPAVGGFWTHNGWNSTLESICE----GVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 345 l~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
...+++ +|+=||=||++.+... ++|++.+... .+|--. +..++++.+++.+++++
T Consensus 70 ~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 70 ADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA--EAEAEDLDEAVERVVDR 128 (306)
T ss_pred ccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec--cCCHHHHHHHHHHHHcC
Confidence 345666 9999999999998764 7888877531 112211 35677777888888765
No 309
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.87 E-value=36 Score=30.96 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=36.8
Q ss_pred hhhhcCCCccccccccCchhHHHHHh----hCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhc
Q 012678 342 QEVLAHPAVGGFWTHNGWNSTLESIC----EGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTV 416 (458)
Q Consensus 342 ~~ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~ 416 (458)
.++...+++ +|+=||=||++.+.. .++|++.+-.. .+|--. +.+++++.+.+.++++
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~--~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT--DIDPKNAYEQLEACLE 97 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc--cCCHHHHHHHHHHHHh
Confidence 444445677 999999999998755 36788776421 122111 3566777777777776
No 310
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=35.87 E-value=43 Score=34.34 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=50.7
Q ss_pred cCccccCCH-HHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceee--------ccC--hhhhhc
Q 012678 278 FGSIVVVNV-TEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVK--------WAP--QQEVLA 346 (458)
Q Consensus 278 ~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~ip--q~~ll~ 346 (458)
.||...... ..-+.+++.|++.|.+.+..+.+.. ...+-+.+.+ .+++.++. +.- +..+-.
T Consensus 4 ~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~------~~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg 75 (564)
T PRK08155 4 SGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGA------ILPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTG 75 (564)
T ss_pred CCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcc------cHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcC
Confidence 455444222 4467788889888888888877653 1112233311 01122221 111 111223
Q ss_pred CCCccccccccCc------hhHHHHHhhCCcccccc
Q 012678 347 HPAVGGFWTHNGW------NSTLESICEGVPMICQP 376 (458)
Q Consensus 347 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 376 (458)
.+.+ +++|.|- +.+.+|...++|+|++.
T Consensus 76 ~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 76 KPAV--CMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCeE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 4445 8888774 47899999999999985
No 311
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=35.67 E-value=1.3e+02 Score=29.82 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=27.5
Q ss_pred CEEEEEc--CCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFP--LPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
|+-+|++ ..+.|-..-...|++.|+++|++|..+-+
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 4434443 33458899999999999999999988865
No 312
>PRK12342 hypothetical protein; Provisional
Probab=35.48 E-value=66 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=24.4
Q ss_pred CeeEEEecCch------hhHHHHHHHcCCCeEEEecc
Q 012678 113 PVTCLITDAIW------HFAQTVADTLRLPRIVLRTS 143 (458)
Q Consensus 113 ~pDlvI~D~~~------~~~~~~A~~lgiP~v~~~~~ 143 (458)
.||+|++..-+ .-+..+|+.+|+|++.+...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 59999976543 33788999999999986655
No 313
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.45 E-value=41 Score=30.73 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=34.4
Q ss_pred CCCccccccccCchhHHHHHh---hCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 347 HPAVGGFWTHNGWNSTLESIC---EGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 347 ~~~~~~~I~HgG~~s~~eal~---~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
.+++ +|.-||-||+++++. .++|++.++... .=-+. .++++++.+++.+++++
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~---------------lGFl~-~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMGT---------------LGFLT-EVEPEETFFALSRLLEG 112 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCC---------------CCccc-cCCHHHHHHHHHHHHcC
Confidence 3455 999999999999874 356888877421 10111 34566667777776655
No 314
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=35.24 E-value=49 Score=29.72 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=27.4
Q ss_pred CEEEEEcCC---CCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLP---LQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
||.+|++.+ +.|-=.-.-.|+..|..||+.|+.+--+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~D 40 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKID 40 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeec
Confidence 578888877 4467777899999999999999998654
No 315
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=35.17 E-value=1.1e+02 Score=30.11 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=21.3
Q ss_pred CCeeEEEecCchhhHHHHHHHcCCCeEEE
Q 012678 112 EPVTCLITDAIWHFAQTVADTLRLPRIVL 140 (458)
Q Consensus 112 ~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 140 (458)
.+||+||.+.. ...+|+++|+|++.+
T Consensus 370 ~~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 370 EPVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred cCCCEEEECch---hHHHHHhcCCCEEEe
Confidence 57999999964 357888999999864
No 316
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=35.10 E-value=44 Score=30.90 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=25.0
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
|||+++-.|+.| ..+|..|+++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 688888666654 4678889999999999876
No 317
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=34.90 E-value=1.4e+02 Score=31.24 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
|||+|+..+. ..+...++|.+.||+|..+.+
T Consensus 1 mkivf~g~~~-----~a~~~l~~L~~~~~~i~~V~t 31 (660)
T PRK08125 1 MKAVVFAYHD-----IGCVGIEALLAAGYEIAAVFT 31 (660)
T ss_pred CeEEEECCCH-----HHHHHHHHHHHCCCcEEEEEe
Confidence 7889885443 234555888889999995443
No 318
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=34.89 E-value=66 Score=28.72 Aligned_cols=36 Identities=25% Similarity=0.107 Sum_probs=28.7
Q ss_pred CEEEEEc--CCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFP--LPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
|+++.+. -||-|-..-.-.||..|+++|+.|..+=-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 4544443 45779999999999999999999998843
No 319
>PRK11914 diacylglycerol kinase; Reviewed
Probab=34.59 E-value=69 Score=29.72 Aligned_cols=84 Identities=10% Similarity=-0.031 Sum_probs=47.9
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCc
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAV 350 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~ 350 (458)
+-.++++.-|-.....+.+..+.+.|++.+..+........ + ....+. ........++
T Consensus 10 ~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~-------~-~~~~~a--------------~~~~~~~~d~ 67 (306)
T PRK11914 10 KVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDA-------H-DARHLV--------------AAALAKGTDA 67 (306)
T ss_pred eEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCH-------H-HHHHHH--------------HHHHhcCCCE
Confidence 33455554443333345567788888887776543332111 0 011111 0111233455
Q ss_pred cccccccCchhHHHHH----hhCCcccccccc
Q 012678 351 GGFWTHNGWNSTLESI----CEGVPMICQPCF 378 (458)
Q Consensus 351 ~~~I~HgG~~s~~eal----~~GvP~l~~P~~ 378 (458)
+|.-||=||+.|++ ..++|+-++|..
T Consensus 68 --vvv~GGDGTi~evv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 68 --LVVVGGDGVISNALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred --EEEECCchHHHHHhHHhccCCCcEEEEeCC
Confidence 99999999999986 347899999964
No 320
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=34.37 E-value=2.3e+02 Score=30.20 Aligned_cols=41 Identities=10% Similarity=0.183 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCC--CCcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 12 KKGRRVILFPLP--LQGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 12 ~~~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
.+..|++.++.. +-|--.-...||..|+..|+.|.++-.+.
T Consensus 528 ~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 528 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 345577777665 45778889999999999999999986653
No 321
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=34.31 E-value=80 Score=31.13 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=31.3
Q ss_pred CEEEEEcCC---CCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLP---LQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+|.+|++.+ +.|-=...-.|+..|.+||+.||.+--+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlD 40 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLD 40 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecc
Confidence 578888887 4577788999999999999999998654
No 322
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=34.18 E-value=2.9e+02 Score=23.36 Aligned_cols=59 Identities=8% Similarity=0.022 Sum_probs=39.9
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCC------CCCCCCCceEEecCC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSP------NPSNYPHFSFNSISE 70 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~------~~~~~~~~~~~~~~~ 70 (458)
..+.-|-+++..+.|-....+.+|-+-+-+|..|.++-.-.... .....+++.+..+..
T Consensus 19 ~~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g~ 83 (178)
T PRK07414 19 TIEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCDL 83 (178)
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEECCC
Confidence 44678999999999999988888888777888888764321110 011224677776664
No 323
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=34.01 E-value=70 Score=24.68 Aligned_cols=34 Identities=18% Similarity=0.037 Sum_probs=29.6
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
++..+.++..|-.....++..|.++|++|.++..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 5677777889999999999999999999998854
No 324
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=33.97 E-value=51 Score=29.05 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|+++++-.+-. -..+|+.|.++||+|+.+-..
T Consensus 1 m~iiIiG~G~v-----G~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRV-----GRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHH-----HHHHHHHHHhCCCceEEEEcC
Confidence 45555544432 368999999999999999764
No 325
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=33.80 E-value=49 Score=27.66 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 22 LPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 22 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.|+.|++- ..|+++|.++||+|+.++-.
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESS
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecC
Confidence 34456554 45899999999999999875
No 326
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=33.72 E-value=60 Score=28.49 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=28.4
Q ss_pred HHHHHhhCCCCCCCeeEEEecCch--hhHHHHHHHcCCCeEEEecch
Q 012678 100 CLAKLISNGDQEEPVTCLITDAIW--HFAQTVADTLRLPRIVLRTSS 144 (458)
Q Consensus 100 ~l~~l~~~~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 144 (458)
-++.+++ .+||+||..... .....-....++|++.+....
T Consensus 52 ~~E~i~~-----l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 52 NLEAILA-----LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp -HHHHHH-----T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred cHHHHHh-----CCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 3466666 689999988766 556667778899999988875
No 327
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=33.55 E-value=65 Score=26.05 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=47.2
Q ss_pred cCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCC-cccHHHHHHHHHHHh
Q 012678 357 NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVT 415 (458)
Q Consensus 357 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~~i~~ll 415 (458)
|+==||.|-+----|+|+=.-..-+++|...+.. |+-..+.+ .++.++|..++..+-
T Consensus 35 ~~RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl~~--gl~~A~~KRpVs~e~ie~~v~~ie 92 (156)
T COG1327 35 GERFTTFERAELRPLIVVKKDGRREPFDREKLRR--GLIRACEKRPVSSEQIEEAVSHIE 92 (156)
T ss_pred ccccchhheeeeccceEECcCCCcCCCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4445788888877888888888899999999996 88888887 899999998888774
No 328
>PRK09165 replicative DNA helicase; Provisional
Probab=33.48 E-value=1.8e+02 Score=29.22 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=29.5
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhC---------------CCEEEEEeCCC
Q 012678 17 VILFPLPLQGHINPMLQLASILYSK---------------GFSITIIHTNF 52 (458)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~Vt~~~~~~ 52 (458)
+++...|+.|-..-++.+|...+.+ |..|.|++-+-
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEM 270 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEM 270 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcC
Confidence 5667778889999999999988754 78899998763
No 329
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=33.30 E-value=82 Score=28.10 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+.|.++++.++ |.+- ..+|+.|+++|++|+++...
T Consensus 14 ~~k~vlItGas-~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 14 DGKVAIVTGGN-TGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCCEEEEeCCC-chHH--HHHHHHHHHCCCEEEEEeCC
Confidence 34777777665 5444 78899999999999888653
No 330
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=33.30 E-value=3e+02 Score=26.74 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=26.7
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
||||++-.+++-| +||+.|++.+..-.+++.+.|
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~~~apgN 34 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYVYVAPGN 34 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEEEEeCCC
Confidence 8999999999998 589999987765555555544
No 331
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.23 E-value=1.2e+02 Score=24.66 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=45.5
Q ss_pred ccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 012678 374 CQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLV 452 (458)
Q Consensus 374 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 452 (458)
-+|..-.+-.+|+.+.+. .- .|+. -..+.|.+.+.+|+.|. +.-+-.+.+++..+.++ |.+...++..++
T Consensus 77 pyPWt~~~L~aa~el~ee-~e--eLs~-deke~~~~sl~dL~~d~--PkT~vA~~rfKk~~~K~---g~~v~~~~~dIl 146 (158)
T PF10083_consen 77 PYPWTENALEAANELIEE-DE--ELSP-DEKEQFKESLPDLTKDT--PKTKVAATRFKKILSKA---GSIVGDAIRDIL 146 (158)
T ss_pred CCchHHHHHHHHHHHHHH-hh--cCCH-HHHHHHHhhhHHHhhcC--CccHHHHHHHHHHHHHH---hHHHHHHHHHHH
Confidence 467667777777766653 22 2232 45778999999999863 67777888888877763 444444444433
No 332
>PRK04296 thymidine kinase; Provisional
Probab=33.18 E-value=2.4e+02 Score=23.90 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=30.2
Q ss_pred EEEEEcCC-CCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 16 RVILFPLP-LQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 16 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
.|.+++.+ +.|=..-++.++.++..+|..|.++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 56777776 889999999999999999999998854
No 333
>PRK06270 homoserine dehydrogenase; Provisional
Probab=33.04 E-value=2.4e+02 Score=26.71 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=35.3
Q ss_pred ChhhhhcCCCcccccc------ccC---chhHHHHHhhCCcccc---cccccchhhHHHHHHHHHhcceec
Q 012678 340 PQQEVLAHPAVGGFWT------HNG---WNSTLESICEGVPMIC---QPCFGDQLVNARYVSHVWRVGLHL 398 (458)
Q Consensus 340 pq~~ll~~~~~~~~I~------HgG---~~s~~eal~~GvP~l~---~P~~~DQ~~na~~v~~~~G~G~~l 398 (458)
...++|..+++.++|- |+| ..-+.+||.+|+++|+ -|+...-..-.+..+++ |+....
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEE
Confidence 4566776555544665 553 4566899999999999 47654333333444443 665544
No 334
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=32.96 E-value=84 Score=28.17 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=27.3
Q ss_pred CEEEEEcCCCC--cCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFPLPLQ--GHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~--GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
-+|++++.++- |+ -+.+|+.|.++|++|+++..
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEEc
Confidence 57999998875 44 57889999999999999873
No 335
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=32.90 E-value=72 Score=28.18 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=34.2
Q ss_pred ccHHH---HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012678 402 FERRE---IETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 457 (458)
Q Consensus 402 ~~~~~---l~~~i~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (458)
++.++ |+++.+.+...+ ..++++++.+.+++. ....+.+++++|.+
T Consensus 205 f~~e~i~alr~ayk~lfr~~--~~~~e~~~~i~~~~~--------~~~~v~~~~dFi~~ 253 (260)
T COG1043 205 FSREEIHALRKAYKLLFRSG--LTLREALEEIAEEYA--------DNPEVKEFIDFIAS 253 (260)
T ss_pred CCHHHHHHHHHHHHHHeeCC--CCHHHHHHHHHHHhc--------CChHHHHHHHHHhh
Confidence 45444 667777887653 689999999877775 66788889988864
No 336
>PRK07454 short chain dehydrogenase; Provisional
Probab=32.49 E-value=93 Score=27.33 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
.+||.++++.++ |. =-..++++|.++|++|+++.-
T Consensus 4 ~~~k~vlItG~s-g~--iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 4 NSMPRALITGAS-SG--IGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCCEEEEeCCC-ch--HHHHHHHHHHHCCCEEEEEeC
Confidence 356777777554 43 346789999999999888764
No 337
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=32.40 E-value=5.5e+02 Score=26.45 Aligned_cols=34 Identities=9% Similarity=-0.058 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
.++|+++-.+ +-...++++..+.|++|.++....
T Consensus 22 ~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~ 55 (577)
T PLN02948 22 ETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLE 55 (577)
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4577777655 444667777788899999997753
No 338
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.24 E-value=74 Score=25.06 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=27.1
Q ss_pred CcEEEEEcCccccCCHHHHHHHHHHHHhC--CCceEEEEc
Q 012678 271 KSVMYVSFGSIVVVNVTEFLEIAWGLANS--RVPFLWVVR 308 (458)
Q Consensus 271 ~~~i~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~ 308 (458)
+.++++++||......+.+..+.+.+++. +..+-|.+.
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 36899999998875555677788887642 446667664
No 339
>PRK13768 GTPase; Provisional
Probab=32.18 E-value=1.3e+02 Score=26.94 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.+++.-.++.|--.-+..++..|.++|+.|.++..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 455555567788888999999999999999998764
No 340
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.11 E-value=72 Score=29.50 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=38.2
Q ss_pred cCCCccccccccCchhHHHHHh----hCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 346 AHPAVGGFWTHNGWNSTLESIC----EGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 346 ~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
..+++ +|+=||-||+++++. .++|++.+... .+|- +. ..+++++.++|.+++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGF-l~-~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGF-LT-DIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------cccc-cc-cCCHHHHHHHHHHHHcC
Confidence 34666 999999999999975 36788777541 1221 11 46788888888888875
No 341
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=32.05 E-value=2e+02 Score=28.21 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHH-hCCCEEEEEeCCCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILY-SKGFSITIIHTNFN 53 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~ 53 (458)
-++++..+|.|-..-+..||..|. ++|+.|.++..+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 466666668899999999999997 58999999988643
No 342
>PRK13604 luxD acyl transferase; Provisional
Probab=31.68 E-value=1e+02 Score=28.62 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEe
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIH 49 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 49 (458)
++-+.++++.+..++-.-+..+|+.|.++|+.|.-+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 3446777777777777779999999999999988773
No 343
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.52 E-value=66 Score=29.32 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=36.1
Q ss_pred CCCccccccccCchhHHHHHhh-CCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 347 HPAVGGFWTHNGWNSTLESICE-GVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 347 ~~~~~~~I~HgG~~s~~eal~~-GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
.+++ +|+=||-||++.+... ..|++.+-.. .+|-- .+.+++++.+++++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~G--------------~lGFL--~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINMG--------------GLGFL--TEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEECC--------------CCccC--cccCHHHHHHHHHHHHcC
Confidence 4566 9999999999999873 4566555320 11211 146778888888888876
No 344
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.33 E-value=68 Score=28.94 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=35.4
Q ss_pred CCCccccccccCchhHHHHHh-hCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 347 HPAVGGFWTHNGWNSTLESIC-EGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 347 ~~~~~~~I~HgG~~s~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
.+++ +|+=||-||++.|+. .++|++.+-... +|--. ..+.+++.+++.++++.
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G~--------------lGfl~--~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAGR--------------LGFLS--SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCCC--------------Ccccc--ccCHHHHHHHHHHHHcC
Confidence 3455 999999999999976 467776653110 11111 46677788888887765
No 345
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=31.26 E-value=72 Score=26.25 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
..+|+++-.|. -....++.|.+.||+|+++.+.
T Consensus 13 ~~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcCc
Confidence 44666664443 3477899999999999999654
No 346
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=31.06 E-value=1.8e+02 Score=29.94 Aligned_cols=28 Identities=11% Similarity=0.142 Sum_probs=22.9
Q ss_pred CCCccccccccCc------hhHHHHHhhCCcccccc
Q 012678 347 HPAVGGFWTHNGW------NSTLESICEGVPMICQP 376 (458)
Q Consensus 347 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 376 (458)
.+.+ +++|.|- +.+.+|...++|+|++.
T Consensus 68 ~~gv--~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGM--VIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEE--EEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3455 9999884 47788999999999996
No 347
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=31.04 E-value=68 Score=31.31 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
|||.|+-.|..| ..+|..|+++||+|+++-.
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 578777555444 6889999999999988854
No 348
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=31.03 E-value=67 Score=31.96 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=37.3
Q ss_pred cCCCccccccccCchhHHHHHhh----CCcccccccccchhhHHHHHHHHHh-cceecCCcccHHHHHHHHHHHhcc
Q 012678 346 AHPAVGGFWTHNGWNSTLESICE----GVPMICQPCFGDQLVNARYVSHVWR-VGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 346 ~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
..+++ +|+=||=||++.|... ++|++.+- +| +|- |. .++++++.++|.+++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN---------------~G~LGF-Lt-~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS---------------MGSLGF-MT-PFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe---------------CCCcce-ec-ccCHHHHHHHHHHHHcC
Confidence 34666 9999999999999764 46776552 12 222 12 46788888888888876
No 349
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.01 E-value=3e+02 Score=22.97 Aligned_cols=92 Identities=7% Similarity=0.038 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCCC------CCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhcChhHHHHHHHH
Q 012678 31 MLQLASILYSKGFSITIIHTNFNS------PNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDCLAKL 104 (458)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 104 (458)
+..|.+...++|..|.+++..... .....++++.++...++.- ......+.++.+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-------------------~~~~~~~i~~~I 97 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-------------------DEEEEEAIINRI 97 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-------------------ChhhHHHHHHHH
Confidence 455666666789999999875221 1123457787776554322 001122344455
Q ss_pred hhCCCCCCCeeEEEecCch----hhHHHHHHHcCCCeEEEecchHHH
Q 012678 105 ISNGDQEEPVTCLITDAIW----HFAQTVADTLRLPRIVLRTSSISS 147 (458)
Q Consensus 105 ~~~~~~~~~pDlvI~D~~~----~~~~~~A~~lgiP~v~~~~~~~~~ 147 (458)
.+ .+||+|++...+ .+.......++.+ +.+..+.++.
T Consensus 98 ~~-----~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d 138 (172)
T PF03808_consen 98 NA-----SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAFD 138 (172)
T ss_pred HH-----cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchhh
Confidence 54 689999998866 4666777777888 5555554443
No 350
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=30.86 E-value=73 Score=29.75 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|||+|+-.+. ..+...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPT-----FSLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCcEEEEEcC
Confidence 7899986554 3477778888999999876653
No 351
>PLN02929 NADH kinase
Probab=30.73 E-value=47 Score=30.69 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=42.7
Q ss_pred cCCCccccccccCchhHHHHHh---hCCccccccccc------chhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhc
Q 012678 346 AHPAVGGFWTHNGWNSTLESIC---EGVPMICQPCFG------DQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTV 416 (458)
Q Consensus 346 ~~~~~~~~I~HgG~~s~~eal~---~GvP~l~~P~~~------DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~ 416 (458)
..+++ +|+-||=||++.|.. .++|++.+-... .++.|.-...+ -+|--. ..+.+++.+.+.++++
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r--~lGfL~--~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARR--STGHLC--AATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccccc--Cccccc--cCCHHHHHHHHHHHHc
Confidence 34566 999999999999854 468888875532 12233211111 234322 3678899999999998
Q ss_pred c
Q 012678 417 E 417 (458)
Q Consensus 417 ~ 417 (458)
+
T Consensus 137 g 137 (301)
T PLN02929 137 G 137 (301)
T ss_pred C
Confidence 6
No 352
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=30.58 E-value=77 Score=27.21 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=25.2
Q ss_pred CeeEEE-ecCch-hhHHHHHHHcCCCeEEEecch
Q 012678 113 PVTCLI-TDAIW-HFAQTVADTLRLPRIVLRTSS 144 (458)
Q Consensus 113 ~pDlvI-~D~~~-~~~~~~A~~lgiP~v~~~~~~ 144 (458)
.||+|| .|+.. .-+..=|.++|||.|.+.-+.
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 588876 56644 778889999999999987663
No 353
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=30.55 E-value=1.7e+02 Score=26.84 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=21.1
Q ss_pred CCCccccccccCchhHHHHHhh-----CCccc-ccccc
Q 012678 347 HPAVGGFWTHNGWNSTLESICE-----GVPMI-CQPCF 378 (458)
Q Consensus 347 ~~~~~~~I~HgG~~s~~eal~~-----GvP~l-~~P~~ 378 (458)
.+++ +|.-||=||+.|++.. ..|.+ ++|..
T Consensus 57 ~~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 57 GVDT--VIAGGGDGTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred CCCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 3456 9999999999996542 34444 48963
No 354
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=30.53 E-value=2.9e+02 Score=27.18 Aligned_cols=87 Identities=23% Similarity=0.293 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhc
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKC 93 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (458)
..|+++...+ .....+++-|.+.|-+|..+......+.. ..++ .+.....|.
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~--------~~~~----~~~~~~~D~----------- 362 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLL--------QKLP----VETVVIGDL----------- 362 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHH--------HhCC----cCcEEeCCH-----------
Confidence 4567766533 46788888899999999888775332111 0011 111111111
Q ss_pred ChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEE
Q 012678 94 VVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVL 140 (458)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 140 (458)
. .++++++. .++|++|.+.. ...+|+++|||++.+
T Consensus 363 ----~-~l~~~i~~----~~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 ----E-DLEDLACA----AGADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred ----H-HHHHHHhh----cCCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 1 11223322 57999998853 467899999999864
No 355
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=30.39 E-value=92 Score=27.71 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=28.4
Q ss_pred cCCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 11 QKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
....++|+++.--..-=..-+-+....|.++||+|++++--
T Consensus 7 ~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred cccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 34466776665544444466677777889999999998653
No 356
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=30.38 E-value=52 Score=29.00 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 27 HINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 27 H~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|+..|-..|++|.++||+|.++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678999999999999999999775
No 357
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.07 E-value=84 Score=22.05 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCC
Q 012678 29 NPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 29 ~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.-.+.+|..|+++|.+||++...
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHHhCcEEEEEecc
Confidence 35688999999999999999875
No 358
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=30.06 E-value=48 Score=23.70 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 012678 31 MLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+-.+.+.|.++||+|+=+...
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred chHHHHHHHHCCCEEEecCCc
Confidence 457899999999999988764
No 359
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=30.05 E-value=1.1e+02 Score=27.98 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=35.8
Q ss_pred ChhHHHHHHHHhhCCCCCCCeeEEEecCchhh-----HHHHHHHcCCCeEEEecch
Q 012678 94 VVPFQDCLAKLISNGDQEEPVTCLITDAIWHF-----AQTVADTLRLPRIVLRTSS 144 (458)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~-----~~~~A~~lgiP~v~~~~~~ 144 (458)
.+.+++.++++.+.+ .+.=+||.|.|+.. ...+|.+.+||++++.-..
T Consensus 132 ~p~IKE~vR~~I~~A---~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQA---QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred CCCHHHHHHHHHHHh---cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 456777888877765 57899999998722 2457779999999976653
No 360
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=30.05 E-value=69 Score=31.77 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|||+++-.| ..-++-|.+|+++||+||++-..
T Consensus 1 ~rVai~GaG-----~AgL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAG-----LAGLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEccc-----HHHHHHHHHHHhCCCceEEEecc
Confidence 566666444 35688999999999999998654
No 361
>PRK05636 replicative DNA helicase; Provisional
Probab=30.00 E-value=1.1e+02 Score=30.77 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=28.9
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHH-hCCCEEEEEeCC
Q 012678 17 VILFPLPLQGHINPMLQLASILY-SKGFSITIIHTN 51 (458)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~ 51 (458)
|++...|+.|-..-++.+|...+ +.|..|.|++.+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlE 303 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLE 303 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEee
Confidence 56677788899999999998876 458899998876
No 362
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=29.96 E-value=5.4e+02 Score=26.58 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=28.6
Q ss_pred cccCchhHHHHHhhCCc--c--ccccc-ccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHh
Q 012678 355 THNGWNSTLESICEGVP--M--ICQPC-FGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT 415 (458)
Q Consensus 355 ~HgG~~s~~eal~~GvP--~--l~~P~-~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll 415 (458)
.+||+|+........-+ + +.+|- +.+.. ....+.+ .. .+|++.|.++|++++
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g-~~~~l~~--~~------Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRV-PVEELYK--RN------HLTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCC-CHHHHHH--HH------CcCHHHHHHHHHHHh
Confidence 57999886666554333 3 33433 33322 2222322 12 268888888888765
No 363
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=29.92 E-value=75 Score=26.99 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCC--CCCC---CccCcccHHHHHHHHHHhcChhHHHHHHH
Q 012678 29 NPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISE--SLWE---SEVSTENAISLLTVLNDKCVVPFQDCLAK 103 (458)
Q Consensus 29 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 103 (458)
.-.+.+|+.|.+.|+++. .|.. -.....+ .|+.+..+.+ ++|+ +...+..+.-.-..+.+.... +.. +
T Consensus 11 ~~l~~lAk~L~~lGf~I~-AT~G-TAk~L~e-~GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~~~~~---~~~-~ 83 (187)
T cd01421 11 TGLVEFAKELVELGVEIL-STGG-TAKFLKE-AGIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRDNE---EHK-D 83 (187)
T ss_pred ccHHHHHHHHHHCCCEEE-EccH-HHHHHHH-cCCeEEEhhhccCCcHhhCCccccCChhhhhhhhcCCCCh---hHH-H
Confidence 447899999999999974 3332 2222222 4565555542 3333 333333333222233222222 222 3
Q ss_pred HhhCCCCCCCeeEEEecCc
Q 012678 104 LISNGDQEEPVTCLITDAI 122 (458)
Q Consensus 104 l~~~~~~~~~pDlvI~D~~ 122 (458)
+.+..- ...|+||++.+
T Consensus 84 ~~~~~i--~~idlVvvNlY 100 (187)
T cd01421 84 LEEHGI--EPIDLVVVNLY 100 (187)
T ss_pred HHHcCC--CCeeEEEEccc
Confidence 443332 57899999864
No 364
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.45 E-value=3.1e+02 Score=29.38 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=30.2
Q ss_pred CCEEEEEcCC--CCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 14 GRRVILFPLP--LQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 14 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
..|++.++.. +-|--.-...||..|++.|+.|.++-.+
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D 584 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDAD 584 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4465555554 6699999999999999999999998664
No 365
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=29.22 E-value=1.3e+02 Score=21.31 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=27.3
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEe
Q 012678 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIH 49 (458)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 49 (458)
+++...++.|--.-...||..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 445555677888899999999999999998876
No 366
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=29.12 E-value=3.7e+02 Score=23.01 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
++|+.+++. +-.|..+.--..|+++|++|.-+++.
T Consensus 1 ~l~~avVCa---sN~NRSMEAH~~L~~~G~~V~SfGTG 35 (195)
T PF04722_consen 1 KLRFAVVCA---SNQNRSMEAHNVLKKAGFNVRSFGTG 35 (195)
T ss_dssp -SEEEEEES---SSSSHHHHHHHHHHHTT-EEEEEE-S
T ss_pred CceEEEEcc---CCCCcCHHHHHHHHHCCCceEeecCC
Confidence 467777776 45678888888999999999999986
No 367
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.98 E-value=83 Score=28.17 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHhhCCCCCCCeeEEEecCchhh---HHHHHHHcCCCeEEEec
Q 012678 101 LAKLISNGDQEEPVTCLITDAIWHF---AQTVADTLRLPRIVLRT 142 (458)
Q Consensus 101 l~~l~~~~~~~~~pDlvI~D~~~~~---~~~~A~~lgiP~v~~~~ 142 (458)
++++.. .+||+||....... .-.+.+.+|+|++.+..
T Consensus 67 ~E~i~~-----l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 67 YEKIAA-----LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHHHh-----cCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
No 368
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=28.91 E-value=1.2e+02 Score=26.30 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCC--cCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 14 GRRVILFPLPLQ--GHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 14 ~~~il~~~~~~~--GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+.||++++.++- |+ -+-.|+.|..+|++|+++...
T Consensus 49 ~~~v~vlcG~GnNGGD---G~VaAR~L~~~G~~V~v~~~~ 85 (203)
T COG0062 49 ARRVLVLCGPGNNGGD---GLVAARHLKAAGYAVTVLLLG 85 (203)
T ss_pred CCEEEEEECCCCccHH---HHHHHHHHHhCCCceEEEEeC
Confidence 678999999875 44 467899999999999998764
No 369
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=28.91 E-value=1.3e+02 Score=23.29 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=28.7
Q ss_pred CEEEEEcCCCCcCHHHHH---HHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPML---QLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l---~La~~L~~rGh~Vt~~~~~ 51 (458)
||+++++....|-...++ .|.++-.++||++.+=+..
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg 42 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQG 42 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 889999888888777765 5666677789999986653
No 370
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=28.83 E-value=1.6e+02 Score=30.30 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=22.5
Q ss_pred CCCccccccccCc------hhHHHHHhhCCcccccc
Q 012678 347 HPAVGGFWTHNGW------NSTLESICEGVPMICQP 376 (458)
Q Consensus 347 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 376 (458)
.+.+ +++|.|- +.+.+|...++|||++.
T Consensus 68 ~~gv--~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 68 VPGV--CTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CCEE--EEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 3445 8888884 47799999999999996
No 371
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.82 E-value=2.4e+02 Score=27.17 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=32.3
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
--|.|+-.-+.|-...|-.+|-.+.++|+.+.+++.+
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaD 138 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCAD 138 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeec
Confidence 3466666778899999999999999999999999886
No 372
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.75 E-value=1.1e+02 Score=22.09 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=27.5
Q ss_pred CEEEEEcCCCC--cCHHHHHHHHHHHHhCCCEEEEEe
Q 012678 15 RRVILFPLPLQ--GHINPMLQLASILYSKGFSITIIH 49 (458)
Q Consensus 15 ~~il~~~~~~~--GH~~p~l~La~~L~~rGh~Vt~~~ 49 (458)
-+|+++|.... .+..-...++..|.+.|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 36788887653 466778999999999999998743
No 373
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.72 E-value=85 Score=30.39 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=30.4
Q ss_pred CCCEEEEEcCC-CC--cCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLP-LQ--GHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~-~~--GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
-+..+.|=|.+ +. ||+.|+..|. .|.+.||+|+++...
T Consensus 33 ~~~Y~GfDPTa~slHlGhlv~l~kL~-~fQ~aGh~~ivLigd 73 (401)
T COG0162 33 LRVYIGFDPTAPSLHLGHLVPLMKLR-RFQDAGHKPIVLIGD 73 (401)
T ss_pred ceEEEeeCCCCCccchhhHHHHHHHH-HHHHCCCeEEEEecc
Confidence 35678888887 33 9999988875 577899999999875
No 374
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=28.68 E-value=62 Score=28.32 Aligned_cols=31 Identities=23% Similarity=0.048 Sum_probs=22.2
Q ss_pred CEEEEEc-CCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFP-LPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
|||.|+- .+.. -..||+.|+++||+|++...
T Consensus 1 MkI~IIGG~G~m-----G~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQ-----GKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHH-----HHHHHHHHHhCCCEEEEEEc
Confidence 6777763 3332 34788999999999998754
No 375
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=28.63 E-value=1.4e+02 Score=26.59 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
.+.++|+++-.. | .--..|+++|.++||+|+.++-
T Consensus 15 ~~~~~ilItGas--G--~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 15 VKTKTVFVAGAT--G--RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred ccCCeEEEECCC--c--HHHHHHHHHHHhCCCEEEEEec
Confidence 344566554432 3 3346788899999999987764
No 376
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.61 E-value=72 Score=28.92 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCccccccccCchhHHHHHhh-----CCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 348 PAVGGFWTHNGWNSTLESICE-----GVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 348 ~~~~~~I~HgG~~s~~eal~~-----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
+++ +|+=||=||++.++.. .+|++.+-..+ .+|- + .+.+.+++.+++.+++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGF-L-~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGF-Y-CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeE-c-ccCCHHHHHHHHHHHHcC
Confidence 466 9999999999999874 56665554310 0111 1 145677888888888765
No 377
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=28.57 E-value=71 Score=29.34 Aligned_cols=74 Identities=11% Similarity=0.270 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHH
Q 012678 284 VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTL 363 (458)
Q Consensus 284 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~ 363 (458)
.+.+....+.+|++....+.||.+.++.. .. ++.++++...+-.+|+. ||-..-..+++
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGGyg-----------~~--------rlL~~ld~~~i~~~pK~--~iGySDiTaL~ 104 (284)
T PF02016_consen 46 SDEERAEDLNEAFADPEIDAIWCARGGYG-----------AN--------RLLPYLDYDAIRKNPKI--FIGYSDITALH 104 (284)
T ss_dssp -HHHHHHHHHHHHHSTTEEEEEES--SS------------GG--------GGGGGCHHHHHHHSG-E--EEE-GGGHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEeecccc-----------HH--------HHHhcccccccccCCCE--EEEecchHHHH
Confidence 35566888999999999999999887641 11 56777777777778777 88777766666
Q ss_pred HHHhh--CCcccccccc
Q 012678 364 ESICE--GVPMICQPCF 378 (458)
Q Consensus 364 eal~~--GvP~l~~P~~ 378 (458)
-+++. |++.+-=|+.
T Consensus 105 ~al~~~~g~~t~hGp~~ 121 (284)
T PF02016_consen 105 NALYAKTGLVTFHGPML 121 (284)
T ss_dssp HHHHHHHTBEEEES--H
T ss_pred HHHHHhCCCeEEEcchh
Confidence 66553 5665555553
No 378
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=28.55 E-value=95 Score=30.01 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=32.0
Q ss_pred CCCCEEEEEc--CCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 12 KKGRRVILFP--LPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 12 ~~~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.++++|+.++ -||.|-..-.+.||..|+.+|+.|.++=.+
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4567766554 447799999999999999999999998654
No 379
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=28.49 E-value=2.2e+02 Score=29.30 Aligned_cols=28 Identities=14% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCCccccccccCch------hHHHHHhhCCcccccc
Q 012678 347 HPAVGGFWTHNGWN------STLESICEGVPMICQP 376 (458)
Q Consensus 347 ~~~~~~~I~HgG~~------s~~eal~~GvP~l~~P 376 (458)
.+.+ +++|.|-| .+.+|...++|+|++-
T Consensus 78 ~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4555 99998855 6789999999999985
No 380
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=28.43 E-value=95 Score=26.17 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=25.9
Q ss_pred HHHHHhhCCCCCCCeeEEEecCchhh-HHHHHHHcCCCeEEEecc
Q 012678 100 CLAKLISNGDQEEPVTCLITDAIWHF-AQTVADTLRLPRIVLRTS 143 (458)
Q Consensus 100 ~l~~l~~~~~~~~~pDlvI~D~~~~~-~~~~A~~lgiP~v~~~~~ 143 (458)
-++.+++ .+||+||....... ...--+..|+|++.+...
T Consensus 52 n~E~l~~-----l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~ 91 (195)
T cd01143 52 NVEKIVA-----LKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAA 91 (195)
T ss_pred CHHHHhc-----cCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCC
Confidence 4566665 68999998654322 334556789998887543
No 381
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.40 E-value=68 Score=26.92 Aligned_cols=110 Identities=13% Similarity=0.105 Sum_probs=55.1
Q ss_pred cCHHHHHHHHHHH-HhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCC----------CC--------CccC-cccHHHH
Q 012678 26 GHINPMLQLASIL-YSKGFSITIIHTNFNSPNPSNYPHFSFNSISESL----------WE--------SEVS-TENAISL 85 (458)
Q Consensus 26 GH~~p~l~La~~L-~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--------~~~~-~~~~~~~ 85 (458)
+.+.-.+..|+.| .+.|.+|.+.-.. ......+..++.++.++-.. .. ++.. ..+.. .
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~-~ 94 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLE-S 94 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHH-H
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHH-H
Confidence 6778889999999 7889998887553 21111111234454444100 00 0000 01111 1
Q ss_pred HHHHHHh--------cChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecchH
Q 012678 86 LTVLNDK--------CVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSI 145 (458)
Q Consensus 86 ~~~~~~~--------~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 145 (458)
+..+... ....+...+.++.. .+.|+||.+.. +...|+++|+|++.+.++..
T Consensus 95 ~~~ll~~~i~~~~~~~~~e~~~~i~~~~~-----~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 95 IEELLGVDIKIYPYDSEEEIEAAIKQAKA-----EGVDVIVGGGV---VCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp HHHHHT-EEEEEEESSHHHHHHHHHHHHH-----TT--EEEESHH---HHHHHHHTTSEEEESS--HH
T ss_pred HHHHhCCceEEEEECCHHHHHHHHHHHHH-----cCCcEEECCHH---HHHHHHHcCCcEEEEEecHH
Confidence 1111110 02244456777766 57999999963 46889999999999877643
No 382
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.38 E-value=2.1e+02 Score=20.91 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=23.1
Q ss_pred HHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012678 406 EIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 455 (458)
Q Consensus 406 ~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (458)
+....+.++.+|.. -..+|+.|...++.+.+ ++.+....+...+-.+
T Consensus 17 q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~---e~e~p~vRaAtaIsiL 64 (93)
T COG1698 17 QVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN---EGESPAVRAATAISIL 64 (93)
T ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHHHhC---CCCCchhHHHHHHHHH
Confidence 34445566677732 23455555555555543 3555544444444333
No 383
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=28.37 E-value=1e+02 Score=27.82 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=24.6
Q ss_pred CeeEEEecCch------hhHHHHHHHcCCCeEEEecc
Q 012678 113 PVTCLITDAIW------HFAQTVADTLRLPRIVLRTS 143 (458)
Q Consensus 113 ~pDlvI~D~~~------~~~~~~A~~lgiP~v~~~~~ 143 (458)
.||+|++..-+ .-+..+|+.+|+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 59999976533 35678999999999987665
No 384
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=28.34 E-value=2e+02 Score=29.73 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=22.8
Q ss_pred CCCccccccccC------chhHHHHHhhCCcccccc
Q 012678 347 HPAVGGFWTHNG------WNSTLESICEGVPMICQP 376 (458)
Q Consensus 347 ~~~~~~~I~HgG------~~s~~eal~~GvP~l~~P 376 (458)
.+.+ +++|.| .+.+.+|...++|+|++.
T Consensus 63 ~~gv--~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 63 KVGV--CVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCEE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3555 888887 458899999999999984
No 385
>PRK10037 cell division protein; Provisional
Probab=28.30 E-value=89 Score=27.96 Aligned_cols=29 Identities=21% Similarity=0.075 Sum_probs=25.1
Q ss_pred CCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 23 PLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 23 ~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
||-|-..-...||..|+++|++|.++=.+
T Consensus 11 GGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 11 GGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred CCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 46689999999999999999999998443
No 386
>COG1422 Predicted membrane protein [Function unknown]
Probab=28.30 E-value=3.8e+02 Score=23.02 Aligned_cols=83 Identities=10% Similarity=0.196 Sum_probs=48.3
Q ss_pred hhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHH
Q 012678 360 NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSL 438 (458)
Q Consensus 360 ~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~~~~~~~~~~ 438 (458)
+|+.+++..++-.+..|+..=++..--.+.-+ ....-....+++.+.|.+ -+++++.++++++++++|
T Consensus 23 ~~~~~~i~~~ln~~f~P~i~~~~p~lvilV~a----------vi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA- 91 (201)
T COG1422 23 SSIRDGIGGALNVVFGPLLSPLPPHLVILVAA----------VITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREA- 91 (201)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHHHHH----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-
Confidence 36667777776666666654333322222211 122334455666776643 478899999999999887
Q ss_pred hhCCChHHHHHHHHHH
Q 012678 439 LEAGSSYQSLERLVDH 454 (458)
Q Consensus 439 ~~~g~~~~~~~~~~~~ 454 (458)
...+....++++-+.
T Consensus 92 -~~~~d~~~lkkLq~~ 106 (201)
T COG1422 92 -QESGDMKKLKKLQEK 106 (201)
T ss_pred -HHhCCHHHHHHHHHH
Confidence 334455666665543
No 387
>PRK07206 hypothetical protein; Provisional
Probab=28.29 E-value=2.4e+02 Score=27.39 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+|+++-..+ ....+++++.++|++++++...
T Consensus 4 ~~liv~~~~-----~~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 4 KVVIVDPFS-----SGKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred eEEEEcCCc-----hHHHHHHHHHHcCCeEEEEEcC
Confidence 566665432 2356899999999999888765
No 388
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=27.99 E-value=79 Score=24.15 Aligned_cols=39 Identities=13% Similarity=-0.049 Sum_probs=27.2
Q ss_pred hhhhcCCCcccccccc---CchhHHHH---HhhCCcccccccccc
Q 012678 342 QEVLAHPAVGGFWTHN---GWNSTLES---ICEGVPMICQPCFGD 380 (458)
Q Consensus 342 ~~ll~~~~~~~~I~Hg---G~~s~~ea---l~~GvP~l~~P~~~D 380 (458)
...+..|++-+++-.| +.||..|. .+.|+|++++-.-..
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~ 100 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDR 100 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCc
Confidence 4466777775555555 88999995 778999998865433
No 389
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=27.62 E-value=1.5e+02 Score=23.08 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=26.5
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 18 ILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 18 l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+++..|..++-.-+..+++.|+++|+.|..+..+
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4555555567777999999999999999888443
No 390
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=27.60 E-value=36 Score=28.25 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=23.2
Q ss_pred CCCccccccccCch------hHHHHHhhCCccccccc
Q 012678 347 HPAVGGFWTHNGWN------STLESICEGVPMICQPC 377 (458)
Q Consensus 347 ~~~~~~~I~HgG~~------s~~eal~~GvP~l~~P~ 377 (458)
.+.+ +++|+|-| .+.||...++|||++.-
T Consensus 60 ~~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 60 RPVA--VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCEE--EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 4555 88888844 67899999999999954
No 391
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=27.49 E-value=79 Score=31.64 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhhCCCCCCCeeEEE----ecCchhhHHHHHHHcCCCeEEEecchHHH
Q 012678 95 VPFQDCLAKLISNGDQEEPVTCLI----TDAIWHFAQTVADTLRLPRIVLRTSSISS 147 (458)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 147 (458)
..+.+.++...+. +.+|.+| +|-..+..+.+|.++++|.|++..++...
T Consensus 65 elIAd~iE~~~~a----~~~Dg~V~l~gCDK~~Pg~lMaaarlniPsi~v~gGpm~~ 117 (521)
T PF00920_consen 65 ELIADSIEEMVRA----HPFDGMVLLGGCDKIVPGMLMAAARLNIPSIFVYGGPMLP 117 (521)
T ss_dssp HHHHHHHHHHHTT-------SEEEEE--STTCCHHHHHHHHTTTS-EEE--------
T ss_pred HHHHHHHHHHHhC----CCcceEEEeccCCCccHHHHHHHHHcCCCEEEEecCCCCC
Confidence 3455667777765 6799988 56667888999999999999988876543
No 392
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=27.42 E-value=68 Score=30.26 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.7
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|||.|+-.|..| ..+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 689888766655 46788899999999998753
No 393
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=27.35 E-value=78 Score=23.90 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeC
Q 012678 29 NPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 29 ~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
.|.+.|+++|.++|.+|.+.=|
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 6899999999999999888755
No 394
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=27.31 E-value=3e+02 Score=21.39 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=34.8
Q ss_pred cchhhccCCCCcEEEEEcCccccC-CHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhH
Q 012678 261 CISWLDKQAAKSVMYVSFGSIVVV-NVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGF 325 (458)
Q Consensus 261 ~~~~l~~~~~~~~i~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~ 325 (458)
..+|+.. .-+++|.|-.... +...+..+++.+.+.+.-.+..-.+.. ...+|+.+
T Consensus 36 ~~~~l~~----gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~------~~~iP~~~ 91 (123)
T PF07905_consen 36 PSDWLRG----GELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRY------LDEIPEEI 91 (123)
T ss_pred HHHhCCC----CeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCc------cccCCHHH
Confidence 4567754 2467777776664 566688889999988876554433322 34577665
No 395
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=27.29 E-value=90 Score=27.63 Aligned_cols=30 Identities=23% Similarity=0.102 Sum_probs=26.8
Q ss_pred CCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 22 LPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 22 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
-||-|--.-.+.||..|+++|+.|.++-.+
T Consensus 10 KGGvGKTt~a~nla~~la~~g~~VlliD~D 39 (246)
T TIGR03371 10 KGGVGKTTLTANLASALKLLGEPVLAIDLD 39 (246)
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 567799999999999999999999998665
No 396
>PRK08322 acetolactate synthase; Reviewed
Probab=27.27 E-value=2.8e+02 Score=28.20 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=22.8
Q ss_pred CCCccccccccCc------hhHHHHHhhCCcccccc
Q 012678 347 HPAVGGFWTHNGW------NSTLESICEGVPMICQP 376 (458)
Q Consensus 347 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 376 (458)
.+.+ +++|.|- +.+.+|...++|+|++.
T Consensus 63 ~~gv--~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 63 KAGV--CLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCEE--EEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3445 8988884 58899999999999985
No 397
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=27.15 E-value=1.3e+02 Score=24.32 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=30.5
Q ss_pred CCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcC
Q 012678 270 AKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRP 309 (458)
Q Consensus 270 ~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 309 (458)
...+|++++||......+.++.+++.+. .+.++++....
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 4579999999999877888888888875 35777776554
No 398
>PRK13055 putative lipid kinase; Reviewed
Probab=27.13 E-value=1.9e+02 Score=27.24 Aligned_cols=82 Identities=12% Similarity=-0.074 Sum_probs=45.5
Q ss_pred EEEEEcCccccCCHHHHHHHHHHHHhCCCceEE-EEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCcc
Q 012678 273 VMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLW-VVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVG 351 (458)
Q Consensus 273 ~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~ 351 (458)
.++++..|......+.+..+...|++.+..+.+ .+.... + ....+. +.......++
T Consensus 6 ~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~-------~-~a~~~~--------------~~~~~~~~d~- 62 (334)
T PRK13055 6 RLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEP-------N-SAKNEA--------------KRAAEAGFDL- 62 (334)
T ss_pred EEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCC-------c-cHHHHH--------------HHHhhcCCCE-
Confidence 455555543333345566777888877765543 222111 0 112221 0111223455
Q ss_pred ccccccCchhHHHHHhh------CCcccccccc
Q 012678 352 GFWTHNGWNSTLESICE------GVPMICQPCF 378 (458)
Q Consensus 352 ~~I~HgG~~s~~eal~~------GvP~l~~P~~ 378 (458)
+|--||=||+.|++.. .+|+-++|..
T Consensus 63 -vvv~GGDGTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 63 -IIAAGGDGTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred -EEEECCCCHHHHHHHHHhhcCCCCcEEEECCC
Confidence 8999999999988742 4788889964
No 399
>PRK13057 putative lipid kinase; Reviewed
Probab=27.12 E-value=1.3e+02 Score=27.62 Aligned_cols=32 Identities=13% Similarity=0.032 Sum_probs=24.8
Q ss_pred hcCCCccccccccCchhHHHHH----hhCCcccccccc
Q 012678 345 LAHPAVGGFWTHNGWNSTLESI----CEGVPMICQPCF 378 (458)
Q Consensus 345 l~~~~~~~~I~HgG~~s~~eal----~~GvP~l~~P~~ 378 (458)
....++ +|.-||=||+.|.+ ..++|+-++|..
T Consensus 48 ~~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~G 83 (287)
T PRK13057 48 ADGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPLG 83 (287)
T ss_pred HcCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECCC
Confidence 344556 99999999988885 347899999964
No 400
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=27.11 E-value=2.7e+02 Score=25.48 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEE
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITII 48 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 48 (458)
|||+++-..| -+ --.|.+.|.++||+|.-.
T Consensus 1 MriLI~GasG--~l--G~~l~~~l~~~~~~v~~~ 30 (286)
T PF04321_consen 1 MRILITGASG--FL--GSALARALKERGYEVIAT 30 (286)
T ss_dssp EEEEEETTTS--HH--HHHHHHHHTTTSEEEEEE
T ss_pred CEEEEECCCC--HH--HHHHHHHHhhCCCEEEEe
Confidence 7888775444 22 235678888899887766
No 401
>PRK05246 glutathione synthetase; Provisional
Probab=27.09 E-value=78 Score=29.59 Aligned_cols=37 Identities=8% Similarity=0.110 Sum_probs=28.9
Q ss_pred CEEEEEcCCCC---cCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQ---GHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~---GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|||+|+.-|-. -.......|+++-.++||+|.++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~ 41 (316)
T PRK05246 2 MKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPD 41 (316)
T ss_pred ceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehh
Confidence 78888876531 33355688999999999999999985
No 402
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=27.00 E-value=1.3e+02 Score=27.73 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCCCc-C---HHHHHHHHHHHHhCCCEEEEEeC
Q 012678 13 KGRRVILFPLPLQG-H---INPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 13 ~~~~il~~~~~~~G-H---~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
.++||+++..|..+ | +...-.++++|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 47799998887543 1 45677899999999999988743
No 403
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=26.95 E-value=1e+02 Score=29.99 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.2
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCCEEEEE
Q 012678 20 FPLPLQGHINPMLQLASILYSKGFSITII 48 (458)
Q Consensus 20 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 48 (458)
-|..+.|-..-.+.|.++|++||++|.-+
T Consensus 7 g~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 7 GTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred cCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 34456699999999999999999998764
No 404
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=26.95 E-value=1.1e+02 Score=28.73 Aligned_cols=37 Identities=14% Similarity=0.345 Sum_probs=32.5
Q ss_pred EEEE--EcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 16 RVIL--FPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 16 ~il~--~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
-|.+ ++.++.|-.--.+.|++.|.++|+.|.+++-.+
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 4556 688999999999999999999999999998754
No 405
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=26.94 E-value=1.3e+02 Score=25.23 Aligned_cols=39 Identities=26% Similarity=0.472 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
++..++|+-.+|.|-..-..++++++.++|+.|.|+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 355788888888898888999999999999999998764
No 406
>PRK06841 short chain dehydrogenase; Provisional
Probab=26.78 E-value=1.3e+02 Score=26.55 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=23.3
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
.+.++++..+ |.+ -..+|+.|+++|++|..+..
T Consensus 15 ~k~vlItGas-~~I--G~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 15 GKVAVVTGGA-SGI--GHAIAELFAAKGARVALLDR 47 (255)
T ss_pred CCEEEEECCC-ChH--HHHHHHHHHHCCCEEEEEeC
Confidence 3556666544 444 47789999999999887754
No 407
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.78 E-value=2.8e+02 Score=22.94 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=59.0
Q ss_pred hhhhh-cCCCccccccccC---chhHHHHHhhCCcccccccc-cchhhHHHHHHHHHhcceecCC-cccHHHHHHHHHHH
Q 012678 341 QQEVL-AHPAVGGFWTHNG---WNSTLESICEGVPMICQPCF-GDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRV 414 (458)
Q Consensus 341 q~~ll-~~~~~~~~I~HgG---~~s~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~~i~~l 414 (458)
|..|+ .||++..-+--.| .-|+.|.-.+|.=-+.==-+ .=+..|+++.++ .|.=-.+.- ..|.++|.++..+=
T Consensus 65 rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~r-FgfPfI~aVkg~~k~~Il~a~~~R 143 (176)
T COG3195 65 RLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYVER-FGFPFIIAVKGNTKDTILAAFERR 143 (176)
T ss_pred HHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHHHh-cCCceEEeecCCCHHHHHHHHHHH
Confidence 44433 4777722221122 34677777777654321000 115679999998 788765554 57789999998888
Q ss_pred hccchhHHHHHHHHHHHHHHH
Q 012678 415 TVEAEGQEMRERIMHLKEKLE 435 (458)
Q Consensus 415 l~~~~~~~~~~~a~~~~~~~~ 435 (458)
++|++.+++++.+..+.+..+
T Consensus 144 l~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 144 LDNDREQEFATALAEIERIAL 164 (176)
T ss_pred hcccHHHHHHHHHHHHHHHHH
Confidence 887666788888877766554
No 408
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=26.72 E-value=1.4e+02 Score=25.24 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=24.4
Q ss_pred CCeeEEEecC--chhhHHHHHHHcCCCeEEEec
Q 012678 112 EPVTCLITDA--IWHFAQTVADTLRLPRIVLRT 142 (458)
Q Consensus 112 ~~pDlvI~D~--~~~~~~~~A~~lgiP~v~~~~ 142 (458)
.++|.|++=. ....|..+|.++|+|+|...-
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK 84 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPVRK 84 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEEEe
Confidence 4689998544 457788999999999998543
No 409
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=26.69 E-value=1.2e+02 Score=27.54 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.|.+.-=||-|-..-...||..|+++|++|.++=.+
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 455555678899999999999999999999998543
No 410
>PRK05114 hypothetical protein; Provisional
Probab=26.62 E-value=1.9e+02 Score=19.01 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=7.1
Q ss_pred hCCChHHHHHHHHHHH
Q 012678 440 EAGSSYQSLERLVDHI 455 (458)
Q Consensus 440 ~~g~~~~~~~~~~~~~ 455 (458)
.|=|+..|+..+.+.|
T Consensus 26 qGmSsgEAI~~VA~ei 41 (59)
T PRK05114 26 QGMSSGEAIALVAEEL 41 (59)
T ss_pred ccccHHHHHHHHHHHH
Confidence 3444444444444443
No 411
>PRK13054 lipid kinase; Reviewed
Probab=26.47 E-value=2.3e+02 Score=26.13 Aligned_cols=30 Identities=13% Similarity=-0.073 Sum_probs=23.3
Q ss_pred CCCccccccccCchhHHHHHhh------C--Ccccccccc
Q 012678 347 HPAVGGFWTHNGWNSTLESICE------G--VPMICQPCF 378 (458)
Q Consensus 347 ~~~~~~~I~HgG~~s~~eal~~------G--vP~l~~P~~ 378 (458)
..++ +|.-||=||+.|.+.. + +|+-++|..
T Consensus 56 ~~d~--vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 56 GVAT--VIAGGGDGTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred CCCE--EEEECCccHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 3455 9999999999998644 3 588999964
No 412
>PRK07773 replicative DNA helicase; Validated
Probab=26.46 E-value=1.9e+02 Score=31.68 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=30.5
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhC-CCEEEEEeCCC
Q 012678 17 VILFPLPLQGHINPMLQLASILYSK-GFSITIIHTNF 52 (458)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~ 52 (458)
+++..-|+.|-..-++.+|...+.+ |..|.|++-+.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEm 256 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEM 256 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 6677778999999999999998755 88999998763
No 413
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=26.45 E-value=3.7e+02 Score=22.15 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=64.7
Q ss_pred EEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCcccccc
Q 012678 276 VSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWT 355 (458)
Q Consensus 276 vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~ 355 (458)
|-+||.. +....+++...|+.++..+-..+..- ...|+.+.+ |+-+.. =.+.++ +|.
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~Sa--------HRtp~~~~~----------~~~~a~-~~g~~v--iIa 59 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVSA--------HRTPELMLE----------YAKEAE-ERGIKV--IIA 59 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEECc--------ccCHHHHHH----------HHHHHH-HCCCeE--EEE
Confidence 3355544 45566777788888776654444322 225554421 111100 012344 887
Q ss_pred ccCchhHHHHHhh---CCcccccccccc--hhhHHHH-HHHHH--hc--ceec-CCcccHHHHHHHHHHHhccchhHHHH
Q 012678 356 HNGWNSTLESICE---GVPMICQPCFGD--QLVNARY-VSHVW--RV--GLHL-ERKFERREIETAIRRVTVEAEGQEMR 424 (458)
Q Consensus 356 HgG~~s~~eal~~---GvP~l~~P~~~D--Q~~na~~-v~~~~--G~--G~~l-~~~~~~~~l~~~i~~ll~~~~~~~~~ 424 (458)
-+|...-+-.+.+ -+|+|.+|.... ....+.. +.. + |+ +... +...+...+...|-. ++| +.++
T Consensus 60 ~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vq-mP~gvpvatv~I~~~~nAa~~AaqIl~-~~d---~~l~ 134 (156)
T TIGR01162 60 GAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQ-MPSGVPVATVAIGNAGNAALLAAQILG-IKD---PELA 134 (156)
T ss_pred eCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhc-CCCCCeeEEEEcCChhHHHHHHHHHHc-CCC---HHHH
Confidence 7775433333332 468888887532 1112111 111 1 32 2111 213344444444433 234 6788
Q ss_pred HHHHHHHHHHHHH
Q 012678 425 ERIMHLKEKLELS 437 (458)
Q Consensus 425 ~~a~~~~~~~~~~ 437 (458)
++.+.++++.++.
T Consensus 135 ~kl~~~r~~~~~~ 147 (156)
T TIGR01162 135 EKLKEYRENQKEE 147 (156)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777643
No 414
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=26.39 E-value=3.7e+02 Score=22.21 Aligned_cols=112 Identities=11% Similarity=0.102 Sum_probs=62.3
Q ss_pred EEcCCCCcCHHH-HHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCC----CC-----ccCcccHHHHHHH
Q 012678 19 LFPLPLQGHINP-MLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLW----ES-----EVSTENAISLLTV 88 (458)
Q Consensus 19 ~~~~~~~GH~~p-~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~ 88 (458)
.+.+...+.... +-.+|..|.++|+.|.=++.............+....++++.. .+ ..-..|+..+...
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~La~A 82 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGALAEA 82 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHHHHHHH
Confidence 344555566666 4579999999999998777642222222224566666664321 10 0111222222211
Q ss_pred HHHhcChhHHHHHHHHhhCCCCCCCeeEEEecCch---------hhHHHHHHHcCCCeEEEecch
Q 012678 89 LNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIW---------HFAQTVADTLRLPRIVLRTSS 144 (458)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~---------~~~~~~A~~lgiP~v~~~~~~ 144 (458)
. ..++.-++ .++|++|.+-|. -.....|-..|||+++..+..
T Consensus 83 ~---------~~l~~al~-----~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 83 S---------AALRRALA-----EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred H---------HHHHHHHh-----cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 1 12333333 479999998874 122345777799999866663
No 415
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=26.34 E-value=1.2e+02 Score=30.90 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=36.7
Q ss_pred ChhHHHHHHHHhhCCCCCCCeeEEE----ecCchhhHHHHHHHcCCCeEEEecchH
Q 012678 94 VVPFQDCLAKLISNGDQEEPVTCLI----TDAIWHFAQTVADTLRLPRIVLRTSSI 145 (458)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~~ 145 (458)
+..+.+.++..... ..+|.+| +|-..++.+.+|.++++|.|++..++.
T Consensus 105 RelIAd~iE~~~~a----~~~Dg~V~i~gCDK~~PG~lMaaarlniP~i~v~GG~m 156 (596)
T PRK13017 105 RNLAYLGLVEILYG----YPLDGVVLTTGCDKTTPACLMAAATVDLPAIVLSGGPM 156 (596)
T ss_pred HHHHHHHHHHHHhc----CCcceEEEeccCCCccHHHHHHHHhcCCCEEEEeCCCc
Confidence 34555667777665 6789888 566668888999999999999887753
No 416
>PLN02327 CTP synthase
Probab=26.29 E-value=1e+02 Score=31.09 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=31.5
Q ss_pred CEEEEEcCC---CCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLP---LQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
||.+|++.+ +.|-=.-.-.|+..|..||+.|+.+--+
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~D 40 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKID 40 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecc
Confidence 588999987 4477788999999999999999998654
No 417
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=26.11 E-value=93 Score=25.10 Aligned_cols=36 Identities=6% Similarity=0.146 Sum_probs=25.4
Q ss_pred CEEEEEcCCCC--cCHHHHHHHHHHH-HhCCCEEEEEeC
Q 012678 15 RRVILFPLPLQ--GHINPMLQLASIL-YSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~--GH~~p~l~La~~L-~~rGh~Vt~~~~ 50 (458)
|||+++....+ |+..-+...+.+. .++|++|.++-.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l 39 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDL 39 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEEC
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 78888877765 7777766655554 455999998865
No 418
>CHL00194 ycf39 Ycf39; Provisional
Probab=26.11 E-value=1.3e+02 Score=27.96 Aligned_cols=33 Identities=12% Similarity=0.326 Sum_probs=23.3
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|||++. |+.|.+- ..|+++|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~iG--~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLG--RQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHH--HHHHHHHHHCCCeEEEEEcC
Confidence 566654 4445443 45788999999999998753
No 419
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=26.08 E-value=1.3e+02 Score=30.83 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=35.4
Q ss_pred hhHHHHHHHHhhCCCCCCCeeEEE----ecCchhhHHHHHHHcCCCeEEEecchH
Q 012678 95 VPFQDCLAKLISNGDQEEPVTCLI----TDAIWHFAQTVADTLRLPRIVLRTSSI 145 (458)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~~ 145 (458)
..+.+.++..... ..+|.+| +|-..++.+.+|.++++|.|++..++.
T Consensus 97 elIAdsiE~~~~a----~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGpm 147 (615)
T PRK12448 97 ELIADSVEYMVNA----HCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGPM 147 (615)
T ss_pred HHHHHHHHHHhhC----CCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCCc
Confidence 3344566666655 6789887 566668888999999999999887754
No 420
>PRK13059 putative lipid kinase; Reviewed
Probab=26.05 E-value=2.2e+02 Score=26.30 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=23.1
Q ss_pred CCCccccccccCchhHHHHH---h---hCCcccccccc
Q 012678 347 HPAVGGFWTHNGWNSTLESI---C---EGVPMICQPCF 378 (458)
Q Consensus 347 ~~~~~~~I~HgG~~s~~eal---~---~GvP~l~~P~~ 378 (458)
.+++ +|.-||=||+.|.+ . .++|+-++|..
T Consensus 56 ~~d~--vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 56 SYKY--ILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred CCCE--EEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 3455 99999999988874 3 35899999964
No 421
>PRK13337 putative lipid kinase; Reviewed
Probab=26.01 E-value=2.1e+02 Score=26.43 Aligned_cols=29 Identities=10% Similarity=-0.082 Sum_probs=22.4
Q ss_pred CCccccccccCchhHHHHHhh------CCcccccccc
Q 012678 348 PAVGGFWTHNGWNSTLESICE------GVPMICQPCF 378 (458)
Q Consensus 348 ~~~~~~I~HgG~~s~~eal~~------GvP~l~~P~~ 378 (458)
.++ +|.-||=||+.|++.. ..|+-++|..
T Consensus 58 ~d~--vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 58 FDL--VIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred CCE--EEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 345 9999999999998752 3578889964
No 422
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=25.98 E-value=1.2e+02 Score=30.91 Aligned_cols=48 Identities=21% Similarity=0.125 Sum_probs=36.4
Q ss_pred ChhHHHHHHHHhhCCCCCCCeeEEE----ecCchhhHHHHHHHcCCCeEEEecchH
Q 012678 94 VVPFQDCLAKLISNGDQEEPVTCLI----TDAIWHFAQTVADTLRLPRIVLRTSSI 145 (458)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~~ 145 (458)
+..+.+.++..... +.+|.+| +|-..++.+.+|.++++|.|++..++.
T Consensus 100 RelIAdsiE~~~~a----~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsI~v~GG~m 151 (577)
T PRK13016 100 RNLLAMETEELIRS----HPVDGAVLMGGCDKTTPGLVMGAISMGLPMIYLPAGPM 151 (577)
T ss_pred HHHHHHHHHHHHhc----CCccceEEeccCCCCcHHHHHHHHhcCCCEEEEecCCC
Confidence 34455666766665 6789887 566668888999999999999877753
No 423
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=25.97 E-value=1.3e+02 Score=28.63 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=29.2
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHh-CCCEEEEEeCC
Q 012678 17 VILFPLPLQGHINPMLQLASILYS-KGFSITIIHTN 51 (458)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~ 51 (458)
|..-..--+|++--+-.||+.|++ +|++|++.+.+
T Consensus 3 IFC~VIDNyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 3 IFCRVVDNYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred eEEEeecCCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 344455678999999999999997 69999999876
No 424
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=25.96 E-value=92 Score=27.06 Aligned_cols=44 Identities=9% Similarity=-0.041 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNP 57 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 57 (458)
..+.||++...|+.+ ..-...|.+.|. +||+|.++.++.....+
T Consensus 17 ~~~k~IllgVtGSIA-Ayk~~~lvr~L~-~g~~V~VvmT~~A~~FI 60 (209)
T PLN02496 17 PRKPRILLAASGSVA-AIKFGNLCHCFS-EWAEVRAVVTKASLHFI 60 (209)
T ss_pred CCCCEEEEEEeCHHH-HHHHHHHHHHhc-CCCeEEEEEChhHhhhc
Confidence 446688888777744 444567889997 59999999997554443
No 425
>PRK08309 short chain dehydrogenase; Provisional
Probab=25.90 E-value=1.2e+02 Score=25.42 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
|++ +++.++ | +. -.+++.|.++|++|++++.
T Consensus 1 m~v-lVtGGt-G-~g--g~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 1 MHA-LVIGGT-G-ML--KRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred CEE-EEECcC-H-HH--HHHHHHHHHCcCEEEEEEC
Confidence 454 444444 5 33 4599999999999998764
No 426
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=25.86 E-value=1.3e+02 Score=30.33 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=35.3
Q ss_pred hhHHHHHHHHhhCCCCCCCeeEEE----ecCchhhHHHHHHHcCCCeEEEecchH
Q 012678 95 VPFQDCLAKLISNGDQEEPVTCLI----TDAIWHFAQTVADTLRLPRIVLRTSSI 145 (458)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~~ 145 (458)
..+.+-++..... ..+|.+| +|-..+..+..|.++++|.|++..++.
T Consensus 75 elIAdsiE~~~~~----~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGpm 125 (535)
T TIGR00110 75 EIIADSVETMVNA----HRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGPM 125 (535)
T ss_pred HHHHHHHHHHHhc----CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 3445566666654 6789887 666678888999999999999887753
No 427
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=25.75 E-value=37 Score=28.33 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=23.4
Q ss_pred cCCCccccccccCc------hhHHHHHhhCCcccccccc
Q 012678 346 AHPAVGGFWTHNGW------NSTLESICEGVPMICQPCF 378 (458)
Q Consensus 346 ~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~~ 378 (458)
.++.+ +++|.|- +++.+|...++|+|++.-.
T Consensus 63 g~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 63 GRPGV--VIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp SSEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred ccceE--EEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 34555 8888874 5788899999999999754
No 428
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=25.74 E-value=86 Score=27.25 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=29.8
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|++.-+|+.|-.-..-.||++|.+++|.|..++.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 45556778899999999999999999998877664
No 429
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=25.66 E-value=1.3e+02 Score=30.46 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhhCCCCCCCeeEEE----ecCchhhHHHHHHHcCCCeEEEecchH
Q 012678 95 VPFQDCLAKLISNGDQEEPVTCLI----TDAIWHFAQTVADTLRLPRIVLRTSSI 145 (458)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~~ 145 (458)
..+.+.++...+. ..+|.+| +|-..+..+.+|.++++|.|++..++.
T Consensus 95 eliA~~iE~~~~a----~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGpm 145 (552)
T PRK00911 95 EVIADSIETVVNA----HWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGPI 145 (552)
T ss_pred HHHHHHHHHHhhC----CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 3455566666665 6789887 566668888999999999999987753
No 430
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=25.57 E-value=1.2e+02 Score=27.32 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+|.|+.=||-|-..-+..||..|+++|++|.++=.+
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 366666778899999999999999999999998554
No 431
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.47 E-value=99 Score=29.02 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.|||.|+-.|..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5789998666655 56889999999999998763
No 432
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=25.46 E-value=1.8e+02 Score=29.81 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=22.9
Q ss_pred CCCccccccccCc------hhHHHHHhhCCcccccc
Q 012678 347 HPAVGGFWTHNGW------NSTLESICEGVPMICQP 376 (458)
Q Consensus 347 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 376 (458)
++.+ +++|.|- +.+.+|...++|+|++-
T Consensus 71 ~~gv--~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 71 RPGI--CFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CCEE--EEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4555 9999884 47889999999999884
No 433
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=25.41 E-value=44 Score=29.92 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=22.4
Q ss_pred CCccccccccCchhHHHHHhh----CCccccccc
Q 012678 348 PAVGGFWTHNGWNSTLESICE----GVPMICQPC 377 (458)
Q Consensus 348 ~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~ 377 (458)
+++ +|+-||=||++.++.. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 466 9999999999988664 678887754
No 434
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=25.37 E-value=1.1e+02 Score=23.75 Aligned_cols=38 Identities=16% Similarity=0.297 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.+...|+++++++. +...+..+++|.+.|.+++++...
T Consensus 7 ~~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 7 REGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp ESSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred eCCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 34557899998886 567899999999999999998653
No 435
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.32 E-value=89 Score=32.07 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=37.0
Q ss_pred CCCccccccccCchhHHHHHhh----CCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 347 HPAVGGFWTHNGWNSTLESICE----GVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 347 ~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
.+++ +|+-||=||++.+... ++|++.+-+.. +|. |. +.+++++.+++.+++++
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G~------------lGF---L~-~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMGT------------VGF---LT-EFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCCC------------CCc---Cc-ccCHHHHHHHHHHHHcC
Confidence 3455 9999999999999763 77887764311 122 11 46778888888888876
No 436
>PRK06924 short chain dehydrogenase; Provisional
Probab=25.27 E-value=1.3e+02 Score=26.66 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=23.3
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
||.++++.++ | .=-..+|++|+++|++|++++.
T Consensus 1 ~k~vlItGas-g--giG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 1 MRYVIITGTS-Q--GLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred CcEEEEecCC-c--hHHHHHHHHHHhcCCEEEEEeC
Confidence 4556666544 4 2345779999999999987754
No 437
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.26 E-value=52 Score=31.69 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
=|++---|+-|---=+++++..|+++| .|.+++.+.+
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES 131 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEES 131 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcC
Confidence 355666678899999999999999999 9999999744
No 438
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=25.20 E-value=3.8e+02 Score=25.41 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCC-EEEEEeC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGF-SITIIHT 50 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~ 50 (458)
+.||+++-.++.| ..+|+.|++.|. +++++=.
T Consensus 24 ~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 24 EKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeC
Confidence 5689999888766 567899999998 7777754
No 439
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=25.20 E-value=1.4e+02 Score=26.40 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.+++++++..+. -=-..+|++|+++|+.|+++...
T Consensus 4 ~~~~ilITGas~---GiG~aia~~l~~~G~~v~~~~~~ 38 (251)
T COG1028 4 SGKVALVTGASS---GIGRAIARALAREGARVVVAARR 38 (251)
T ss_pred CCCEEEEeCCCC---HHHHHHHHHHHHCCCeEEEEcCC
Confidence 568888888886 34678999999999998888764
No 440
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=25.18 E-value=1.5e+02 Score=26.95 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCC--CCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 12 KKGRRVILFPLP--LQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 12 ~~~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.+..|++.++.+ +-|--.-...||..|++.|++|.++=.+
T Consensus 100 ~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 445676666655 4477777899999999999999998553
No 441
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=25.18 E-value=1.1e+02 Score=31.96 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=28.7
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
..++||+++.---.-...-|=.....|+++||+|+++.-
T Consensus 367 ~~~~rvLv~spHPDDevi~~GGTlarl~~~G~~V~vv~~ 405 (652)
T PRK02122 367 PYPKRVIIFSPHPDDDVISMGGTFRRLVEQGHDVHVAYQ 405 (652)
T ss_pred cCCceEEEEEeCCCchHhhhHHHHHHHHHCCCcEEEEEe
Confidence 335665555544446788888888999999999999654
No 442
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=25.08 E-value=79 Score=26.09 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEe
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIH 49 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 49 (458)
+||.|+=.+..| ..+|+.|.++||+|++.-
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 567777665544 689999999999998874
No 443
>PRK07236 hypothetical protein; Provisional
Probab=25.04 E-value=1.3e+02 Score=28.91 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=28.4
Q ss_pred ccCCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 10 QQKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
.++..++|+++=.+ .--+.+|..|+++|++|+++=-
T Consensus 2 ~~~~~~~ViIVGaG-----~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 2 THMSGPRAVVIGGS-----LGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCCCeEEEECCC-----HHHHHHHHHHHhCCCCEEEEec
Confidence 45667888888665 3458899999999999999854
No 444
>CHL00175 minD septum-site determining protein; Validated
Probab=25.04 E-value=1.5e+02 Score=27.03 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=30.0
Q ss_pred CCEEEEEcC--CCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 14 GRRVILFPL--PLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 14 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.+|++.+.. ||-|--.-...||..|+++|++|.++-.+
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 346655555 46688899999999999999999888554
No 445
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.90 E-value=96 Score=30.84 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (458)
..||++...++.+ ..=...|.++|.++||+|.++.++...
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~ 109 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQ 109 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHH
Confidence 4678888777644 447889999999999999999987443
No 446
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=24.89 E-value=1.1e+02 Score=26.59 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=25.2
Q ss_pred CeeEEE-ecCch-hhHHHHHHHcCCCeEEEecch
Q 012678 113 PVTCLI-TDAIW-HFAQTVADTLRLPRIVLRTSS 144 (458)
Q Consensus 113 ~pDlvI-~D~~~-~~~~~~A~~lgiP~v~~~~~~ 144 (458)
.||+|| .|+.. .-+..=|.++|||.|.+.-+.
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn 147 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTD 147 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCC
Confidence 488886 56644 778889999999999987663
No 447
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=24.89 E-value=1.4e+02 Score=30.45 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhhCCCCCCCeeEEE----ecCchhhHHHHHHHcCCCeEEEecchH
Q 012678 95 VPFQDCLAKLISNGDQEEPVTCLI----TDAIWHFAQTVADTLRLPRIVLRTSSI 145 (458)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~~ 145 (458)
..+.+-++..... +.+|.+| +|-..++.+.+|.++++|.|++..++.
T Consensus 97 elIAdsiE~~~~a----~~~Dg~v~i~~CDK~~PG~lMaa~rlniPsi~v~gGpm 147 (571)
T PRK06131 97 NLAAMDVEEMIRG----YPIDGVVLLGGCDKTTPALLMGAASVDLPAIVLSGGPM 147 (571)
T ss_pred HHHHHHHHHHHhc----CCcceEEEEeeCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 4455566666665 6789887 666678888999999999999987753
No 448
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=24.82 E-value=1.3e+02 Score=21.65 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcCHHHH-HHHHHHHHhCCCEEEEEeC
Q 012678 16 RVILFPLPLQGHINPM-LQLASILYSKGFSITIIHT 50 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~-l~La~~L~~rGh~Vt~~~~ 50 (458)
||+++|..|.|+-.-. ..+=+.+.++|.++.+...
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~ 36 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAG 36 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEe
Confidence 7899999998887777 8888888889977776655
No 449
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=24.82 E-value=1.4e+02 Score=26.51 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=29.2
Q ss_pred CEEEEEcC-CCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFPL-PLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
|+++.+.. .+.|-..-+..|+++|.++|+.|.++-+
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 56655554 4668888899999999999999999954
No 450
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=24.81 E-value=1.1e+02 Score=28.78 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=27.4
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|+|.++-.+++| .+||+.|++.||+|++-+..
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 678888888776 58999999999999999875
No 451
>PRK09739 hypothetical protein; Provisional
Probab=24.79 E-value=2e+02 Score=24.64 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcC--HH-HHHHHHHHHHhCCCEEEEEeC
Q 012678 14 GRRVILFPLPLQGH--IN-PMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 14 ~~~il~~~~~~~GH--~~-p~l~La~~L~~rGh~Vt~~~~ 50 (458)
.|||+++......+ -. -.-.+++.|.++||+|+++--
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 46777776544432 22 244556677778999998753
No 452
>PRK05693 short chain dehydrogenase; Provisional
Probab=24.55 E-value=1.2e+02 Score=27.36 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
||.++++..+ |-+- ..+++.|+++|++|+.++.
T Consensus 1 mk~vlItGas-ggiG--~~la~~l~~~G~~V~~~~r 33 (274)
T PRK05693 1 MPVVLITGCS-SGIG--RALADAFKAAGYEVWATAR 33 (274)
T ss_pred CCEEEEecCC-ChHH--HHHHHHHHHCCCEEEEEeC
Confidence 5667777665 4333 5788999999999987754
No 453
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=24.55 E-value=97 Score=29.83 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=29.5
Q ss_pred CCCCEEEEEcCC-CC--cCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 12 KKGRRVILFPLP-LQ--GHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 12 ~~~~~il~~~~~-~~--GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+....+.|-|.+ .. ||+.|+..+ +.|++.||+|+++..+
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~l~~l-~~lq~~G~~~~iligd 71 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVPLLKL-RDFQQAGHEVIVLLGD 71 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHHHHHH-HHHHHCCCcEEEEEec
Confidence 345567777777 33 999986665 6888899999999874
No 454
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=24.53 E-value=1.8e+02 Score=24.17 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCccccCCHHHHHHHHHHHHhC
Q 012678 269 AAKSVMYVSFGSIVVVNVTEFLEIAWGLANS 299 (458)
Q Consensus 269 ~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~ 299 (458)
+....+|+++||....+.+.+...++.|+..
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 4566899999998765666677777777664
No 455
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.52 E-value=1.3e+02 Score=28.02 Aligned_cols=35 Identities=31% Similarity=0.233 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
..+.++++.++.| --+.||.+++.+|++||+.+-+
T Consensus 32 ~~~hi~itggS~g---lgl~la~e~~~~ga~Vti~ar~ 66 (331)
T KOG1210|consen 32 PRRHILITGGSSG---LGLALALECKREGADVTITARS 66 (331)
T ss_pred ccceEEEecCcch---hhHHHHHHHHHccCceEEEecc
Confidence 3366677777765 3588999999999999999875
No 456
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.48 E-value=2.2e+02 Score=20.95 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=25.0
Q ss_pred CCeeEEE--ecCch----hhHHHHHHHcCCCeEEEecchHHH
Q 012678 112 EPVTCLI--TDAIW----HFAQTVADTLRLPRIVLRTSSISS 147 (458)
Q Consensus 112 ~~pDlvI--~D~~~----~~~~~~A~~lgiP~v~~~~~~~~~ 147 (458)
.+.|+|| +|... ..+...|.+.++|++.........
T Consensus 47 ~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~ 88 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSS 88 (97)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 3578885 55543 555678999999999987554443
No 457
>PRK06179 short chain dehydrogenase; Provisional
Probab=24.33 E-value=1.3e+02 Score=26.93 Aligned_cols=33 Identities=21% Similarity=0.118 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+.++++.++ |-+ -..++++|+++|++|+.++..
T Consensus 5 ~~vlVtGas-g~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 5 KVALVTGAS-SGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CEEEEecCC-CHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 456666655 545 468899999999999887653
No 458
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=24.24 E-value=4.4e+02 Score=22.59 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=36.8
Q ss_pred HhhCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 366 ICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 366 l~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
.-...|+|.+--++|=+.--+.+.. |+---+.+.++...|.++|.+.+..
T Consensus 73 ~~~~~PVIfiTGhgDIpmaV~AmK~--GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 73 RGIRLPVIFLTGHGDIPMAVQAMKA--GAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHc--chhhHHhCCCchHHHHHHHHHHHHH
Confidence 4456688888888887776655553 6666666678889999999998875
No 459
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=24.08 E-value=1.3e+02 Score=26.59 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|.++++.++ |.+- ..|++.|.++|++|+.++..
T Consensus 2 ~~vlItGa~-g~lG--~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 2 KTALVTGAA-SGIG--LAIALALAAAGANVVVNDLG 34 (255)
T ss_pred CEEEEcCCc-chHH--HHHHHHHHHCCCEEEEEeCC
Confidence 445555544 6664 57889999999998888653
No 460
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.97 E-value=2.2e+02 Score=21.02 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+..||+++|..|.+--.-...+=+.+.++|.++.+-...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 346899999998864444556666677789888776553
No 461
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=23.96 E-value=1.4e+02 Score=27.19 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
+|+|+-=||-|-..-++.||..|+++|++|.++=-+
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 466666678899999999999999999999988554
No 462
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=23.95 E-value=1.4e+02 Score=25.51 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=25.1
Q ss_pred CCeeEEEecC--chhhHHHHHHHcCCCeEEEecc
Q 012678 112 EPVTCLITDA--IWHFAQTVADTLRLPRIVLRTS 143 (458)
Q Consensus 112 ~~pDlvI~D~--~~~~~~~~A~~lgiP~v~~~~~ 143 (458)
.++|+|+.=. ..+.|..+|..+|+|++.....
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~ 82 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAKKK 82 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEEC
Confidence 4689998544 3478888999999999986544
No 463
>PRK06180 short chain dehydrogenase; Provisional
Probab=23.84 E-value=1.5e+02 Score=26.75 Aligned_cols=33 Identities=12% Similarity=-0.023 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
++.++++.++ |.+ -..+++.|+++||+|+.+..
T Consensus 4 ~~~vlVtGas-ggi--G~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 4 MKTWLITGVS-SGF--GRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CCEEEEecCC-ChH--HHHHHHHHHhCcCEEEEEeC
Confidence 3556666655 544 56788899999999988765
No 464
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=23.83 E-value=1.5e+02 Score=27.89 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=19.5
Q ss_pred CCCccccccccCchhHHHH-----Hhh--CCcccccccc
Q 012678 347 HPAVGGFWTHNGWNSTLES-----ICE--GVPMICQPCF 378 (458)
Q Consensus 347 ~~~~~~~I~HgG~~s~~ea-----l~~--GvP~l~~P~~ 378 (458)
++++ +|-=|| ||+... ..+ |+|++.+|..
T Consensus 78 ~~d~--IIaiGG-Gs~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 78 EVDA--VIAVGG-GSTLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred CcCE--EEEeCC-chHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 4566 887777 444433 223 9999999975
No 465
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=23.75 E-value=75 Score=30.27 Aligned_cols=101 Identities=11% Similarity=-0.036 Sum_probs=46.8
Q ss_pred cCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCCCCCccCcccHHHHHHHHHHhcChhHHHH
Q 012678 21 PLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDC 100 (458)
Q Consensus 21 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (458)
-.++-|...-...++++..++|+.|.++..+.- ......-.+....-|.... +......+ ....
T Consensus 17 G~GGGG~p~~~~~~~~~~l~~~~~v~lv~~del-~dd~~v~~v~~~GsP~v~~---E~lp~g~e------------~~~a 80 (353)
T PF06032_consen 17 GSGGGGDPYIGRLMAEQALREGGPVRLVDPDEL-PDDDLVVPVGMMGSPTVSV---EKLPSGDE------------ALRA 80 (353)
T ss_dssp TTT-SS-HHHHHHHHTT-SBTTS-EEEE-GGG---SSE-EEEEEEEE-HHHTT----SS-HHHH------------HHHH
T ss_pred EEcCCccHHHHHHHHHHHHhCCCCeEEEEHhHc-CCCCcEeEEEEeCCChHHh---ccCCCchH------------HHHH
Confidence 356668888888999999999999999988522 1100000111111121000 11001111 1112
Q ss_pred HHHHhhCCCCCCCeeEEEecCc----hhhHHHHHHHcCCCeEE
Q 012678 101 LAKLISNGDQEEPVTCLITDAI----WHFAQTVADTLRLPRIV 139 (458)
Q Consensus 101 l~~l~~~~~~~~~pDlvI~D~~----~~~~~~~A~~lgiP~v~ 139 (458)
++.+.+..+ .++|.|+.-.. ...++.+|..+|+|+|=
T Consensus 81 ~~~le~~~g--~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvD 121 (353)
T PF06032_consen 81 VEALEKYLG--RKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVD 121 (353)
T ss_dssp HHHHHHHTT----EEEEE-SSSSCCHHHHHHHHHHHHT-EEES
T ss_pred HHHHHHhhC--CCccEEeehhcCccchhHHHHHHHHhCCCEEc
Confidence 222222222 57999997553 26667899999999874
No 466
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.74 E-value=1.5e+02 Score=22.94 Aligned_cols=35 Identities=14% Similarity=0.378 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
-++++-. ..|+-..++.+++.++++|..|..++..
T Consensus 55 d~vi~is-~sg~~~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 55 DLVIIIS-YSGETRELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp EEEEEEE-SSSTTHHHHHHHHHHHHTTSEEEEEESS
T ss_pred ceeEeee-ccccchhhhhhhHHHHhcCCeEEEEeCC
Confidence 4444433 4588899999999999999999888875
No 467
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=23.72 E-value=1.3e+02 Score=27.14 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=30.4
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
++|..-|+.|...-...+|..++++|+.|.++..+.
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence 444556677999999999999999999999998864
No 468
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=23.66 E-value=1.7e+02 Score=28.08 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=26.0
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
.++|||++. |+.|.+ -..|++.|.++||+|+.+.-
T Consensus 19 ~~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 19 SEKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 467888766 444554 45789999999999998864
No 469
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=23.58 E-value=2.4e+02 Score=25.12 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=32.2
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCC-CEEEEEeCCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKG-FSITIIHTNF 52 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~ 52 (458)
|||++.--++.|-..-.--|+.+|.++| ++|.++-.+.
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 7889998899998887777788888886 9999997764
No 470
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=23.54 E-value=2.8e+02 Score=28.16 Aligned_cols=109 Identities=9% Similarity=0.093 Sum_probs=61.1
Q ss_pred cCHHHHHHHH-HHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCC-CCC------------C-----CccCcccHHHHH
Q 012678 26 GHINPMLQLA-SILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISE-SLW------------E-----SEVSTENAISLL 86 (458)
Q Consensus 26 GH~~p~l~La-~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~-----~~~~~~~~~~~~ 86 (458)
|++.-.+.+| +.+.+.|++|.+.-.. ......+.-.+.++.++- +++ . ++.....-...+
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG~-ta~~i~~~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~ 115 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGGS-NGAYLKSRLSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPPALRRF 115 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECch-HHHHHHHhCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccHHHHHH
Confidence 7788888888 4466778987776542 222222222344555541 110 0 000111111222
Q ss_pred HHHHHh--------cChhHHHHHHHHhhCCCCCCCeeEEEecCchhhHHHHHHHcCCCeEEEecc
Q 012678 87 TVLNDK--------CVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTS 143 (458)
Q Consensus 87 ~~~~~~--------~~~~l~~~l~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 143 (458)
..+... ........+.++.+ .+.++||.|.. +...|+++|++.|.+.+.
T Consensus 116 ~~ll~~~i~~~~~~~~~e~~~~~~~l~~-----~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 116 QAAFNLDIVQRSYVTEEDARSCVNDLRA-----RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHhCCceEEEEecCHHHHHHHHHHHHH-----CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 222211 12244457777776 57999999973 458899999999998776
No 471
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=23.51 E-value=96 Score=31.69 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=45.7
Q ss_pred ChhhhhcCCCcccccccc-Cc-hhHHHHHhhCCccccccccc-chhhHHH--HHHHHHhcceecCCcccHHHHHHHHHHH
Q 012678 340 PQQEVLAHPAVGGFWTHN-GW-NSTLESICEGVPMICQPCFG-DQLVNAR--YVSHVWRVGLHLERKFERREIETAIRRV 414 (458)
Q Consensus 340 pq~~ll~~~~~~~~I~Hg-G~-~s~~eal~~GvP~l~~P~~~-DQ~~na~--~v~~~~G~G~~l~~~~~~~~l~~~i~~l 414 (458)
++.+++.-|++++|-+== -| -|-+||+++|||.|..=+.+ -++.+-. .-.. .|+-+.=+..-+.++..+.|.+.
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~-~GV~VvdR~~~n~~e~v~~la~~ 540 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEE-YGVYVVDRRDKNYDESVNQLADF 540 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGG-GTEEEE-SSSS-HHHHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcC-CcEEEEeCCCCCHHHHHHHHHHH
Confidence 455566666663333210 02 38899999999999877653 2222111 1122 25544444444555555555544
Q ss_pred h----ccc--hhHHHHHHHHHHHHHH
Q 012678 415 T----VEA--EGQEMRERIMHLKEKL 434 (458)
Q Consensus 415 l----~~~--~~~~~~~~a~~~~~~~ 434 (458)
| .-. .....|++++++++.+
T Consensus 541 l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 541 LYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 4 321 2456777777776654
No 472
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=23.43 E-value=1.6e+02 Score=25.35 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=27.9
Q ss_pred CEEEEEcCCCCcCHHHHHH-HHHHHHh-CCCEEEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQ-LASILYS-KGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~-La~~L~~-rGh~Vt~~~~ 50 (458)
|||+++-+..+||..-+.. +++.+.+ .|++|.++.-
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 4788888888899999776 5555555 8999988765
No 473
>PLN02240 UDP-glucose 4-epimerase
Probab=23.40 E-value=1.4e+02 Score=28.15 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
++|++ + |+.|.+- ..|++.|.++||+|+.+..
T Consensus 6 ~~vlI-t-GatG~iG--~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 6 RTILV-T-GGAGYIG--SHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CEEEE-E-CCCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 45544 3 4446663 4568999999999998853
No 474
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=23.31 E-value=1.4e+02 Score=24.09 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=26.4
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 012678 18 ILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (458)
Q Consensus 18 l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (458)
++-+.++.|-..-.+.||..|+++|++|.++-...
T Consensus 5 v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~ 39 (157)
T PF13614_consen 5 VWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDF 39 (157)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--S
T ss_pred EECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 34446777889999999999999999988886653
No 475
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=23.05 E-value=74 Score=30.68 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.+.-|+++..|..|+-.-.-.+|.+|+.+|+-|..+-..
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHr 136 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHR 136 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccC
Confidence 567899999999999999999999999999998888664
No 476
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.01 E-value=85 Score=24.04 Aligned_cols=69 Identities=9% Similarity=0.011 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCccee-------eccChhhhh---cCCCccccccc
Q 012678 287 TEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIV-------KWAPQQEVL---AHPAVGGFWTH 356 (458)
Q Consensus 287 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~ipq~~ll---~~~~~~~~I~H 356 (458)
+....+++++++.+.+++.+...... ....+ +..+..+.. +|+....|+ ....+ ...|
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d~--------~s~~~--~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~ 79 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPDT--------VSTHV--DMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIH 79 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGT--------TGHHH--HHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEE
T ss_pred HHHHHHHHHHHHhCCcceeccCchhc--------ccccc--cccccceecCcchhhhhhccHHHHhhHhhhhcC--cccc
Confidence 34677899999999999888865431 11111 222333333 356655443 34455 8889
Q ss_pred cCchhHHHHHh
Q 012678 357 NGWNSTLESIC 367 (458)
Q Consensus 357 gG~~s~~eal~ 367 (458)
+|+|-..|...
T Consensus 80 pGyg~lse~~~ 90 (110)
T PF00289_consen 80 PGYGFLSENAE 90 (110)
T ss_dssp STSSTTTTHHH
T ss_pred cccchhHHHHH
Confidence 99987777654
No 477
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.99 E-value=1.2e+02 Score=24.22 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCC-EEEEEeC
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGF-SITIIHT 50 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~ 50 (458)
+....++.++....+|.--+-.+.++|.++|. ++.++..
T Consensus 51 e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 51 EADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 45678888888888999999999999999987 5656554
No 478
>PRK04940 hypothetical protein; Provisional
Probab=22.96 E-value=2.3e+02 Score=24.01 Aligned_cols=31 Identities=3% Similarity=0.073 Sum_probs=25.5
Q ss_pred CeeEEEecCch-hhHHHHHHHcCCCeEEEecc
Q 012678 113 PVTCLITDAIW-HFAQTVADTLRLPRIVLRTS 143 (458)
Q Consensus 113 ~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 143 (458)
+++++|...+. +++.-+|+++|+|.|.+.|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 46777766644 89999999999999998777
No 479
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=22.83 E-value=2.6e+02 Score=23.81 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=29.2
Q ss_pred CE-EEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RR-VILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~-il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.| |+|+..++.-|-.-...+++.|++.|-.|.+++-.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G 145 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFG 145 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 35 77777777777666778999999999998888764
No 480
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=22.82 E-value=40 Score=29.77 Aligned_cols=20 Identities=15% Similarity=0.095 Sum_probs=18.4
Q ss_pred cccccCchhHHHHHhhCCcc
Q 012678 353 FWTHNGWNSTLESICEGVPM 372 (458)
Q Consensus 353 ~I~HgG~~s~~eal~~GvP~ 372 (458)
+|+|||...+.-+...|+|.
T Consensus 179 vVsHg~vir~ll~~~~~~~~ 198 (228)
T PRK14116 179 IAAHGNSLRALTKYIENISD 198 (228)
T ss_pred EEcChHHHHHHHHHHhCCCH
Confidence 99999999999999999885
No 481
>PRK08177 short chain dehydrogenase; Provisional
Probab=22.73 E-value=1.5e+02 Score=25.70 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=24.1
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|+.++++.++ | .--..+++.|+++|++|+++...
T Consensus 1 ~k~vlItG~s-g--~iG~~la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 1 KRTALIIGAS-R--GLGLGLVDRLLERGWQVTATVRG 34 (225)
T ss_pred CCEEEEeCCC-c--hHHHHHHHHHHhCCCEEEEEeCC
Confidence 4556666654 3 33456899999999999888653
No 482
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=22.65 E-value=1.3e+02 Score=25.93 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=24.8
Q ss_pred cCCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEE
Q 012678 11 QKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITII 48 (458)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 48 (458)
..+.++|+++-++. --..+|+.|.+.||+|++.
T Consensus 25 ~l~gk~v~I~G~G~-----vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 25 SLEGKTVAVQGLGK-----VGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEE
Confidence 34557888877654 3467899999999999854
No 483
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=22.57 E-value=2.4e+02 Score=23.60 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=60.5
Q ss_pred CCCcEEEEEcCccccCCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchh-HHHhhcCCcceeeccChhhhhcC
Q 012678 269 AAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKG-FLEMLDGRGHIVKWAPQQEVLAH 347 (458)
Q Consensus 269 ~~~~~i~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~ipq~~ll~~ 347 (458)
.++.+-.+.+|.+. +.+++-++.+|.+++..-.... +.. +.. ....+.+..++++.
T Consensus 35 ~g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~----------~~~~~~~------~~~~~~~l~ell~~ 91 (178)
T PF02826_consen 35 RGKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK----------PEEGADE------FGVEYVSLDELLAQ 91 (178)
T ss_dssp TTSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH----------HHHHHHH------TTEEESSHHHHHHH
T ss_pred CCCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC----------hhhhccc------ccceeeehhhhcch
Confidence 36778899999877 4556666667887655443211 111 110 23477788999999
Q ss_pred CCccccccccCchhHHHHHhhCCcccccccccchhhHHHHHHHHHhcceec---CC--cccHHHHHHHHH
Q 012678 348 PAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHL---ER--KFERREIETAIR 412 (458)
Q Consensus 348 ~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l---~~--~~~~~~l~~~i~ 412 (458)
+++ ++.|.-.+. ...+..|++.+.. ++=|..+ .+ -++.++|.++++
T Consensus 92 aDi--v~~~~plt~----------------~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 92 ADI--VSLHLPLTP----------------ETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -SE--EEE-SSSST----------------TTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhh--hhhhhcccc----------------ccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHh
Confidence 999 887765421 1356677777777 5766444 12 466666766665
No 484
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=22.55 E-value=7.4e+02 Score=24.31 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=21.7
Q ss_pred CCeeEEEecCchhhHHHHHHHcCCCeEEE
Q 012678 112 EPVTCLITDAIWHFAQTVADTLRLPRIVL 140 (458)
Q Consensus 112 ~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 140 (458)
.+||++|.+.. ...+|+++|||++.+
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 57999999974 468899999999865
No 485
>PRK09271 flavodoxin; Provisional
Probab=22.55 E-value=1.7e+02 Score=24.02 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=26.8
Q ss_pred CEEEEEcCCCCcCHHHH-HHHHHHHHhCCCEEEEEe
Q 012678 15 RRVILFPLPLQGHINPM-LQLASILYSKGFSITIIH 49 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~-l~La~~L~~rGh~Vt~~~ 49 (458)
|||+++-...+|+.--+ -.|++.|.++|++|.+.-
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 68777777777887764 456788888899987654
No 486
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.51 E-value=1.9e+02 Score=24.22 Aligned_cols=35 Identities=14% Similarity=0.422 Sum_probs=23.3
Q ss_pred hhhh-cCCCccccccccCchh--HHHHH-hhCCcccccccc
Q 012678 342 QEVL-AHPAVGGFWTHNGWNS--TLESI-CEGVPMICQPCF 378 (458)
Q Consensus 342 ~~ll-~~~~~~~~I~HgG~~s--~~eal-~~GvP~l~~P~~ 378 (458)
..|+ .+|++ +|+.++.+. +.+.+ ..|+|++.++..
T Consensus 63 E~ll~l~PDl--ii~~~~~~~~~~~~~l~~~gIpvv~i~~~ 101 (186)
T cd01141 63 ELIVALKPDL--VILYGGFQAQTILDKLEQLGIPVLYVNEY 101 (186)
T ss_pred HHHhccCCCE--EEEecCCCchhHHHHHHHcCCCEEEeCCC
Confidence 3344 48888 887665543 55554 689999999754
No 487
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=22.39 E-value=2.4e+02 Score=21.28 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=25.7
Q ss_pred CEEEEEcC--CCCcC-HHHHHHHHHHHHhCC---CEEEEEeCC
Q 012678 15 RRVILFPL--PLQGH-INPMLQLASILYSKG---FSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~--~~~GH-~~p~l~La~~L~~rG---h~Vt~~~~~ 51 (458)
|+|+++.. |.... ..-.+.++..+...| |+|.++...
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g 43 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHG 43 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-G
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEc
Confidence 45566555 22333 677888899999999 999998875
No 488
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=22.37 E-value=1.1e+02 Score=30.51 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecC--CCCCC---CccCcccHHHHHHHHHHhcChhHHHHHHH
Q 012678 29 NPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSIS--ESLWE---SEVSTENAISLLTVLNDKCVVPFQDCLAK 103 (458)
Q Consensus 29 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 103 (458)
.-.+.+|+.|.+.|+++. .|.. -...... .|+.+..+. .++|+ ++..+..+.-.-..+.+.-... +++
T Consensus 11 ~~iv~lAk~L~~lGfeIi-ATgG-Tak~L~e-~GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~~~----~~~ 83 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL-STGG-TAKLLAE-AGVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGDDD----DAD 83 (511)
T ss_pred ccHHHHHHHHHHCCCEEE-Eech-HHHHHHH-CCCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCchH----HHH
Confidence 347799999999999984 3332 2222222 456655554 23333 3444444333333333333332 344
Q ss_pred HhhCCCCCCCeeEEEecCc
Q 012678 104 LISNGDQEEPVTCLITDAI 122 (458)
Q Consensus 104 l~~~~~~~~~pDlvI~D~~ 122 (458)
+.+..- ...|+||++.+
T Consensus 84 l~~~~I--~~IDlVvvNLY 100 (511)
T TIGR00355 84 LEEHGI--EPIDLVVVNLY 100 (511)
T ss_pred HHHcCC--CceeEEEEecc
Confidence 443332 57899998864
No 489
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=22.28 E-value=1.6e+02 Score=29.93 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCCCCCeeEEE----ecCchhhHHHHHHHcCCCeEEEecchH
Q 012678 97 FQDCLAKLISNGDQEEPVTCLI----TDAIWHFAQTVADTLRLPRIVLRTSSI 145 (458)
Q Consensus 97 l~~~l~~l~~~~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~~ 145 (458)
+.+-++..+.. ..+|.+| +|-..++.+.+|..++||.|.++.++.
T Consensus 108 IAds~e~~~~~----~~~Da~V~i~~CDKi~PG~lmaa~r~niPaIfv~gGpM 156 (575)
T COG0129 108 IADSVEEVLSA----HPFDGVVLIGGCDKITPGMLMAAARLNIPAIFVSGGPM 156 (575)
T ss_pred HHHHHHHHHhc----cCcceEEEecCCCCccHHHHHHHHhcCCCEEEecCCcC
Confidence 34455555554 6789887 666778888899999999999987754
No 490
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.26 E-value=1.1e+02 Score=23.45 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=33.2
Q ss_pred ccCCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCC-EEEEEeCC
Q 012678 10 QQKKGRRVILFPLPLQGHINPMLQLASILYSKGF-SITIIHTN 51 (458)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~ 51 (458)
....+..++.++.....|......+++.+.+++. ++.++...
T Consensus 46 ~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 46 AKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred HHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 3455677888888878899999999999999987 77665543
No 491
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=22.25 E-value=2e+02 Score=23.19 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=28.6
Q ss_pred CCCCEEEEEcCCCCcCHHH-------HHHHHHHHHhCCC-EEEEEeCCCCCC
Q 012678 12 KKGRRVILFPLPLQGHINP-------MLQLASILYSKGF-SITIIHTNFNSP 55 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p-------~l~La~~L~~rGh-~Vt~~~~~~~~~ 55 (458)
.-|.||+++|...+.--.. +...+.+|.+.|. +|.++|.+....
T Consensus 47 qfKGRv~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~~Wk 98 (142)
T PF10673_consen 47 QFKGRVLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSDSEWK 98 (142)
T ss_pred hcCceEEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecCcccc
Confidence 3488999999887733333 3444678888884 566666654333
No 492
>PRK10490 sensor protein KdpD; Provisional
Probab=22.19 E-value=1.1e+02 Score=33.39 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEe
Q 012678 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIH 49 (458)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 49 (458)
.-++||.+=..||-|-...|+.-|++|+++|++|++-.
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~ 59 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGV 59 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44789999999999999999999999999999998743
No 493
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.06 E-value=2.6e+02 Score=21.56 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceE
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSF 65 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~ 65 (458)
.++++. ...|.-.-++..++.++++|..|..+|.... ....+...+.+
T Consensus 49 d~vi~i-S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~-s~la~~ad~~l 96 (128)
T cd05014 49 DVVIAI-SNSGETDELLNLLPHLKRRGAPIIAITGNPN-STLAKLSDVVL 96 (128)
T ss_pred CEEEEE-eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC-CchhhhCCEEE
Confidence 344433 3447888899999999999999999988533 33333344433
No 494
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=22.02 E-value=4.2e+02 Score=23.36 Aligned_cols=107 Identities=11% Similarity=0.002 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhCCCceEEEEcCCCCCCCcccCCCchhHHHhhcCCcceeeccChhhhhcCCCccccccccCchhHH
Q 012678 284 VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTL 363 (458)
Q Consensus 284 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipq~~ll~~~~~~~~I~HgG~~s~~ 363 (458)
..+.....+...|+..|+.+.+...+. +.+. .+... |+..|| ++ ..-..-.=.++
T Consensus 8 Dd~~i~~~l~~~L~~~g~~v~~~~~~~------------~a~~-------~~~~~-~dlviL---D~--~lP~~dG~~~~ 62 (229)
T COG0745 8 DDPELAELLKEYLEEEGYEVDVAADGE------------EALE-------AAREQ-PDLVLL---DL--MLPDLDGLELC 62 (229)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCHH------------HHHH-------HHhcC-CCEEEE---EC--CCCCCCHHHHH
Confidence 345556667889999999988877542 1111 12222 444443 22 33211111344
Q ss_pred HHHh----hCCcccccccccchhhHHHHHHHHHhcceecCCcccHHHHHHHHHHHhcc
Q 012678 364 ESIC----EGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 417 (458)
Q Consensus 364 eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 417 (458)
.-+. ..+|+|++--..|-.+-..-++ +|+=-.+.+.+++++|.+.|+.++..
T Consensus 63 ~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~--~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 63 RRLRAKKGSGPPIIVLTARDDEEDRVLGLE--AGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred HHHHhhcCCCCcEEEEECCCcHHHHHHHHh--CcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 4454 6778888865544333333222 24434555579999999999999865
No 495
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=21.97 E-value=6.7e+02 Score=23.59 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=36.8
Q ss_pred EEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEecCCCC
Q 012678 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESL 72 (458)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (458)
.++++.+ -.|...-++..++.+.++|..|..+|............+..++.+|.+.
T Consensus 80 dlvI~iS-~SG~T~e~~~a~~~a~~~ga~vIaIT~~~~L~~~a~~~~~~~i~ip~~~ 135 (337)
T PRK08674 80 TLVIAVS-YSGNTEETLSAVEQALKRGAKIIAITSGGKLKEMAKEHGLPVIIVPGGY 135 (337)
T ss_pred cEEEEEc-CCCCCHHHHHHHHHHHHCCCeEEEECCCchHHHHHHhcCCeEEEeCCCC
Confidence 4444444 4488889999999999999998888864211112222366677777554
No 496
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.93 E-value=1e+02 Score=28.88 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=25.0
Q ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
|||.++-.|+.| ..+|..|++.||+|+++...
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEecC
Confidence 677777776654 56888999999999988763
No 497
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=21.86 E-value=1.6e+02 Score=28.43 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=29.8
Q ss_pred CCCEEEEEcC--CCCcCHHHHHHHHHHHHhCCCEEEEEe
Q 012678 13 KGRRVILFPL--PLQGHINPMLQLASILYSKGFSITIIH 49 (458)
Q Consensus 13 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~ 49 (458)
++++|+.+.. ||.|-..-.+.||..|+.+|+.|.++=
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3466654443 577999999999999999999999985
No 498
>PLN02686 cinnamoyl-CoA reductase
Probab=21.84 E-value=1.7e+02 Score=27.91 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (458)
..+|.++++.++ | +--..|++.|+++||+|++++.
T Consensus 51 ~~~k~VLVTGat-G--fIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 51 AEARLVCVTGGV-S--FLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCCCEEEEECCc-h--HHHHHHHHHHHHCCCEEEEEeC
Confidence 345566677665 4 3456788999999999987654
No 499
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.82 E-value=87 Score=28.38 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012678 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (458)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (458)
.+++-+++|..+.| =-..+|+.|++|||+|.+++-.
T Consensus 4 ~~~~~~lITGASsG---IG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 4 MKGKTALITGASSG---IGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCCcEEEEECCCch---HHHHHHHHHHHCCCEEEEEeCc
Confidence 34566777777654 2468999999999999999764
No 500
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=21.76 E-value=1.2e+02 Score=23.39 Aligned_cols=26 Identities=4% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCC
Q 012678 28 INPMLQLASILYSKGFSITIIHTNFN 53 (458)
Q Consensus 28 ~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (458)
+.|++.+.-.+.-|||.++++.|...
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY 34 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYY 34 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHH
Confidence 56788888888999999999998643
Done!