BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012679
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 350 bits (897), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 185/416 (44%), Positives = 261/416 (62%), Gaps = 20/416 (4%)
Query: 24 SKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLA---EVFNM 80
SK DR+IP+RSA + A +++++ EN+Q +P+K+ ++K A F++
Sbjct: 4 SKPGGDRYIPHRSAAQMEVASFLLSK-ENQPENSQ-----TPTKKEHQKAWALNLNGFDV 57
Query: 81 NRTRILAFKNKPPTPVELIPEMHXXXXXXXXXVQQAKLNKPR---RHIPQSSERTLDAPX 137
+IL KP + PE + Q+A R R+IP +R LDAP
Sbjct: 58 EEAKILRLSGKP----QNAPEGYQNRLKVLYS-QKATPGSSRKTCRYIPSLPDRILDAPE 112
Query: 138 XXXXXXXXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRH 197
W S NVLA+AL ++VYLW AS G +L+ ++ ++SV W +G +
Sbjct: 113 IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY 172
Query: 198 IAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD 257
+A+G ++ +VQLWD ++LR + H +RVGSL+WN++IL++G G I ++DVRV +
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE 231
Query: 258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA 317
H V T GH+QEVCGL+W+ G+ LASGGNDNL+++W + V L +H A
Sbjct: 232 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP--LQTFTQHQGA 289
Query: 318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSS 377
VKA+AWCP+QSN+LATGGG DR I+ WN +GACL++VD SQVC++LW+ + +EL+S
Sbjct: 290 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 349
Query: 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
HGF QNQL +WKYP+M K+AEL GHTSRVL + SPDG TVASAAADETLR W F
Sbjct: 350 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 405
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 180/407 (44%), Positives = 255/407 (62%), Gaps = 20/407 (4%)
Query: 33 PNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLA---EVFNMNRTRILAFK 89
P+RSA + A +++++ EN+Q +P+K+ ++K A F++ +IL
Sbjct: 2 PHRSAAQMEVASFLLSK-ENQPENSQ-----TPTKKEHQKAWALNLNGFDVEEAKILRLS 55
Query: 90 NKPPTPVELIPEMHXXXXXXXXXVQQAKLNKPR---RHIPQSSERTLDAPXXXXXXXXXX 146
KP + PE + Q+A R R+IP +R LDAP
Sbjct: 56 GKP----QNAPEGYQNRLKVLYS-QKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNL 110
Query: 147 XXWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQ 206
W S NVLA+AL ++VYLW AS G +L+ ++ ++SV W +G ++A+G ++ +
Sbjct: 111 VDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170
Query: 207 VQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGH 266
VQLWD ++LR + H +RVGSL+WN++IL++G G I ++DVRV +H V T GH
Sbjct: 171 VQLWDVQQQKRLRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 229
Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326
+QEVCGL+W+ G+ LASGGNDNL+++W + V L +H AVKA+AWCP+
Sbjct: 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP--LQTFTQHQGAVKAVAWCPW 287
Query: 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLT 386
QSN+LATGGG DR I+ WN +GACL++VD SQVC++LW+ + +EL+S HGF QNQL
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 347
Query: 387 LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
+WKYP+M K+AEL GHTSRVL + SPDG TVASAAADETLR W F
Sbjct: 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/314 (50%), Positives = 215/314 (68%), Gaps = 3/314 (0%)
Query: 120 KPRRHIPQSSERTLDAPXXXXXXXXXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTV 179
K R+IP +R LDAP W S NVLA+AL ++VYLW AS G +L+ +
Sbjct: 4 KTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM 63
Query: 180 DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHIL 239
+ ++SV W +G ++A+G ++ +VQLWD ++LR + H +RVGSL+WN++IL
Sbjct: 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWNSYIL 122
Query: 240 TTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA 299
++G G I ++DVRV +H V T GH+QEVCGL+W+ G+ LASGGNDNL+++W +
Sbjct: 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182
Query: 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG 359
V L +H AVKA+AWCP+QSN+LATGGG DR I+ WN +GACL++VD
Sbjct: 183 EGGWVP--LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 360 SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVA 419
SQVC++LW+ + +EL+S HGF QNQL +WKYP+M K+AEL GHTSRVL + SPDG TVA
Sbjct: 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 420 SAAADETLRFWNVF 433
SAAADETLR W F
Sbjct: 301 SAAADETLRLWRCF 314
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 297 bits (760), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 166/417 (39%), Positives = 245/417 (58%), Gaps = 40/417 (9%)
Query: 29 DRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEV--FNMNRTRIL 86
DRFIP+R + N S+ S Y + +AE F++N TR+L
Sbjct: 1 DRFIPSR----------------PNTANAFVNSISSDVPFDYSESVAEACGFDLN-TRVL 43
Query: 87 AFKNKPP---TPVELIPEMHXXXXXXXXXVQQAKLNKPRRHIPQSSERTLDAPXXXXXXX 143
AFK P PV+L + + Q+ + +R + ER LDAP
Sbjct: 44 AFKLDAPEAKKPVDLRTQHNRP--------QRPVVTPAKRRFNTTPERVLDAPGIIDDYY 95
Query: 144 XXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN 203
W + NV+A+AL VY+W+A G+ S L D E+ V SV W+ DG +++GL
Sbjct: 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLG 154
Query: 204 NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETY 263
N V ++D + +LRT+ GH++RVG L+WN H+L++G G I ++DVR+ +H + T
Sbjct: 155 NGLVDIYDVESQTKLRTM-AGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL 213
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
+GH+ EVCGL W + G QLASGGNDN++ IWD + +S+ ++ H +AVKA+AW
Sbjct: 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD----ARSSIPKFTK--TNHNAAVKAVAW 267
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN 383
CP+QSNLLATGGG D+ I FWN TGA +N+VD GSQV +L+W+ + +E++S+HGF N
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 384 QLTLWKYPS--MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438
L++W Y S + K ++ H +RVL+ A SPDG +++AA+DE L+FW V+ V
Sbjct: 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 138/280 (49%), Gaps = 38/280 (13%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
TV LW+ + L T+ + V V ++PDG+ IA ++ V+LW+ N QL
Sbjct: 80 TVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQT 134
Query: 222 RGGHRSRVGSLAWNNHILTTGGMDGLII---NNDVRVR-----DHIVETYRGHNQEVCGL 273
GH S V +A++ DG I ++D V+ +++T GH+ V G+
Sbjct: 135 LTGHSSSVWGVAFS--------PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 186
Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
+S GQ +AS +D + +W+R+ Q L L H+S+V+ +A+ P + +
Sbjct: 187 AFSPDGQTIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVRGVAFSPDGQTIAS- 238
Query: 334 GGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391
D+ +K WN G L ++ TG S V + + + + + S+ + LW
Sbjct: 239 --ASDDKTVKLWN-RNGQLLQTL-TGHSSSVNGVAFRPDGQTIASAS--DDKTVKLWNRN 292
Query: 392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
+ + L+GH+S V +A SPDG T+ASA+ D+T++ WN
Sbjct: 293 GQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 139/280 (49%), Gaps = 38/280 (13%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
TV LW+ + L T+ + V V ++PDG+ IA ++ V+LW+ N QL
Sbjct: 326 TVKLWNRNG---QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQT 380
Query: 222 RGGHRSRVGSLAWNNHILTTGGMDGLII---NNDVRVR-----DHIVETYRGHNQEVCGL 273
GH S V +A++ DG I ++D V+ +++T GH+ V G+
Sbjct: 381 LTGHSSSVRGVAFS--------PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 432
Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
+S Q +AS +D + +W+R+ Q L L H+S+V+ +A+ P + +
Sbjct: 433 AFSPDDQTIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVRGVAFSPDGQTIAS- 484
Query: 334 GGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391
D+ +K WN G L ++ TG S V + ++ + + + S+ + LW
Sbjct: 485 --ASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRN 538
Query: 392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
+ + L+GH+S V +A SPDG T+ASA++D+T++ WN
Sbjct: 539 GQL-LQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 35/256 (13%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMD 245
V V ++PDG+ IA ++ V+LW+ N QL GH S V +A++ D
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFS--------PD 68
Query: 246 GLII---NNDVRVR-----DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297
G I ++D V+ +++T GH+ V G+ +S GQ +AS +D + +W+R+
Sbjct: 69 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128
Query: 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357
Q L L H+S+V +A+ P + + D+ +K WN G L ++
Sbjct: 129 G-------QLLQTLTGHSSSVWGVAFSPDGQTIAS---ASDDKTVKLWN-RNGQLLQTL- 176
Query: 358 TG--SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG 415
TG S V + ++ + + + S+ + LW + + L+GH+S V +A SPDG
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASAS--DDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDG 233
Query: 416 CTVASAAADETLRFWN 431
T+ASA+ D+T++ WN
Sbjct: 234 QTIASASDDKTVKLWN 249
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 136/280 (48%), Gaps = 38/280 (13%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
TV LW+ + L T+ + V V ++PDG+ IA ++ V+LW+ N QL
Sbjct: 203 TVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQT 257
Query: 222 RGGHRSRVGSLAWNNHILTTGGMDGLII---NNDVRVR-----DHIVETYRGHNQEVCGL 273
GH S V +A+ DG I ++D V+ +++T GH+ V G+
Sbjct: 258 LTGHSSSVNGVAFR--------PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 309
Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
+S GQ +AS +D + +W+R+ Q L L H+S+V +A+ P + +
Sbjct: 310 AFSPDGQTIASASDDKTVKLWNRNG-------QHLQTLTGHSSSVWGVAFSPDGQTIAS- 361
Query: 334 GGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391
D+ +K WN G L ++ TG S V + ++ + + + S+ + LW
Sbjct: 362 --ASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRN 415
Query: 392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
+ + L+GH+S V +A SPD T+ASA+ D+T++ WN
Sbjct: 416 GQL-LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 137/280 (48%), Gaps = 38/280 (13%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
TV LW+ + L T+ + V V ++PDG+ IA ++ V+LW+ N QL
Sbjct: 39 TVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQT 93
Query: 222 RGGHRSRVGSLAWNNHILTTGGMDGLII---NNDVRVR-----DHIVETYRGHNQEVCGL 273
GH S V +A++ DG I ++D V+ +++T GH+ V G+
Sbjct: 94 LTGHSSSVRGVAFS--------PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 145
Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
+S GQ +AS +D + +W+R+ Q L L H+S+V +A+ P + +
Sbjct: 146 AFSPDGQTIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVWGVAFSPDGQTIAS- 197
Query: 334 GGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391
D+ +K WN G L ++ TG S V + ++ + + + S+ + LW
Sbjct: 198 --ASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRN 251
Query: 392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
+ + L+GH+S V +A PDG T+ASA+ D+T++ WN
Sbjct: 252 GQL-LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 17/168 (10%)
Query: 266 HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
H+ V G+ +S GQ +AS +D + +W+R+ Q L L H+S+V +A+ P
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVWGVAFSP 67
Query: 326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSHGFTQN 383
+ + D+ +K WN G L ++ TG S V + ++ + + + S+
Sbjct: 68 DGQTIAS---ASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIASAS--DDK 120
Query: 384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
+ LW + + L+GH+S V +A SPDG T+ASA+ D+T++ WN
Sbjct: 121 TVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALL 366
+RLE H+S+V+ +A+ P + + D+ +K WN G L ++ TG S V +
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIAS---ASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVA 64
Query: 367 WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADET 426
++ + + + S+ + LW + + L+GH+S V +A SPDG T+ASA+ D+T
Sbjct: 65 FSPDGQTIASAS--DDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 427 LRFWN 431
++ WN
Sbjct: 122 VKLWN 126
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 9/266 (3%)
Query: 172 TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231
T +L+ + V ++ D R IA + +V++W+S + T H +V
Sbjct: 652 TGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTY-DEHSEQVNC 710
Query: 232 LAWNNH----ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN 287
+ N +L TG D + D+ ++ T GH V ++S + LAS
Sbjct: 711 CHFTNSSHHLLLATGSSDCFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDKLLASCSA 769
Query: 288 DNLLHIWDRSMAS---SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF 344
D L +WD + A+ S +V Q+ LE+ ++ I C S A I
Sbjct: 770 DGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFL 829
Query: 345 WNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS 404
++ HT L + TG + + + L+ +Q + LW S K+A+ GH S
Sbjct: 830 FDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLS 889
Query: 405 RVLFMAQSPDGCTVASAAADETLRFW 430
V + SPDG + +++ D+T+R W
Sbjct: 890 WVHGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 10/173 (5%)
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
R H V +S GQ++AS G D L ++ +L E + +
Sbjct: 618 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGE---------KLLEIKAHEDEVLC 668
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-QVCALLWNKNERELLSSHGFTQ 382
C F ++ D+ +K WN+ TG +++ D S QV + + LL + G +
Sbjct: 669 CAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSD 728
Query: 383 NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435
L LW + GHT+ V SPD +AS +AD TL+ W+ A
Sbjct: 729 CFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 19/157 (12%)
Query: 162 TVYLWDASDGTTSELVTV-----------DDENGPVTSVNWAPDGRHIAIGLNNCQVQLW 210
T+ LWDA+ + + V +D V +W+ DG I + N ++ L+
Sbjct: 772 TLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN-KIFLF 830
Query: 211 DSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLII--NNDVRVRDHIVETYRGH 266
D + L + GH S + ++ NH+ + N D R + V RGH
Sbjct: 831 DIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSK---VADCRGH 887
Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
V G+ +S G + +D + +W+ NS
Sbjct: 888 LSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNS 924
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 32/188 (17%)
Query: 255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH 314
V + I ++ H + V ++++A + L S +D + +W+ + L H
Sbjct: 997 VNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-------LRGH 1049
Query: 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL 374
VK S LL+ G +K WN TG VC ++ +
Sbjct: 1050 QETVKDFRLLK-NSRLLSWSFDGT---VKVWNIITGN-----KEKDFVC------HQGTV 1094
Query: 375 LS---SHGFTQNQLT-------LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD 424
LS SH T+ T +W + ++ + EL GH V A S D +A+ +
Sbjct: 1095 LSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDN 1154
Query: 425 ETLRFWNV 432
+R WNV
Sbjct: 1155 GEIRIWNV 1162
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 23/273 (8%)
Query: 172 TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231
T +L+ + V ++ D +IA + +V++WDS + + T H +V
Sbjct: 653 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNC 711
Query: 232 LAWNNH----ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN 287
+ N +L TG D + D+ ++ T GH V ++S + LAS
Sbjct: 712 CHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDELLASCSA 770
Query: 288 DNLLHIWDRSMAS---SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK- 343
D L +WD A+ S +V ++ E+ V+ I C + GD+ I
Sbjct: 771 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC-------CSWSADGDKIIVA 823
Query: 344 ------FWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA 397
++ HT L + TG + + + L+ +Q + LW S +K+A
Sbjct: 824 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA 883
Query: 398 ELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
+ GH S V + SPDG + +A+ D+T+R W
Sbjct: 884 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
R H V +S GQ++AS G D L ++ L ++ H V
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK------LLDIKAHEDEVLC--- 669
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV--CALLWNKNERELLSSHGFT 381
C F S+ D+ +K W++ TG +++ D S+ C NK+ LL++ G
Sbjct: 670 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT-GSN 728
Query: 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435
L LW + GHT+ V SPD +AS +AD TLR W+V A
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 104/285 (36%), Gaps = 34/285 (11%)
Query: 162 TVYLWDASDGTTSELVTV-----------DDENGPVTSVNWAPDGRHIAIGLNNCQVQLW 210
T+ LWD + + V +D V +W+ DG I + N +V L+
Sbjct: 773 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN-KVLLF 831
Query: 211 DSTANRQLRTLRGGHRSRVGSLAWNNH----ILTTGGMDGLIINNDVRVRDHIVETYRGH 266
D + L + GH S + ++ + ++ + N D R++ V RGH
Sbjct: 832 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK---VADCRGH 888
Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326
V G+ +S G + +D + +W+ NS L++ V F
Sbjct: 889 LSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI----VLKQEIDVV-------F 937
Query: 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLT 386
Q N R ++ TG ++ + C L E + G +
Sbjct: 938 QENETMVLAVDNIRGLQLIAGKTGQ-IDYLPEAQVSCCCLSPHLE---YVAFGDEDGAIK 993
Query: 387 LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
+ + P+ + GH V + + DG T+ S++ D ++ WN
Sbjct: 994 IIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 71/185 (38%), Gaps = 13/185 (7%)
Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
GH + V ++++A G+ L S D+++ +W N T L+ H VK
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVW-------NWQTGDYVFLQAHQETVKDFRLL 1060
Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384
S LL+ G +K WN TG T Q L + S
Sbjct: 1061 Q-DSRLLSWSFDGT---VKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKT 1115
Query: 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444
+W + + + EL GH V A S DG +A+ + +R WNV Q++ AP
Sbjct: 1116 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV-SDGQLLHSCAP 1174
Query: 445 KPNRE 449
E
Sbjct: 1175 ISVEE 1179
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 20/96 (20%)
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLH-----RLEEHTSA- 317
+GHN V +S G LA+G ++ + IW+ S Q LH +EE T+
Sbjct: 1131 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG------QLLHSCAPISVEEGTATH 1184
Query: 318 ---VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350
V + + P L++ GG +K+WN TG
Sbjct: 1185 GGWVTDVCFSPDSKTLVSAGGY-----LKWWNVATG 1215
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 23/273 (8%)
Query: 172 TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231
T +L+ + V ++ D +IA + +V++WDS + + T H +V
Sbjct: 646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNC 704
Query: 232 LAWNNH----ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN 287
+ N +L TG D + D+ ++ T GH V ++S + LAS
Sbjct: 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDELLASCSA 763
Query: 288 DNLLHIWDRSMAS---SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK- 343
D L +WD A+ S +V ++ E+ V+ I C + GD+ I
Sbjct: 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC-------CSWSADGDKIIVA 816
Query: 344 ------FWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA 397
++ HT L + TG + + + L+ +Q + LW S +K+A
Sbjct: 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA 876
Query: 398 ELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
+ GH S V + SPDG + +A+ D+T+R W
Sbjct: 877 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
R H V +S GQ++AS G D L ++ L ++ H V
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK------LLDIKAHEDEVLC--- 662
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV--CALLWNKNERELLSSHGFT 381
C F S+ D+ +K W++ TG +++ D S+ C NK+ LL++ G
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT-GSN 721
Query: 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435
L LW + GHT+ V SPD +AS +AD TLR W+V A
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 104/285 (36%), Gaps = 34/285 (11%)
Query: 162 TVYLWDASDGTTSELVTV-----------DDENGPVTSVNWAPDGRHIAIGLNNCQVQLW 210
T+ LWD + + V +D V +W+ DG I + N +V L+
Sbjct: 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN-KVLLF 824
Query: 211 DSTANRQLRTLRGGHRSRVGSLAWNNH----ILTTGGMDGLIINNDVRVRDHIVETYRGH 266
D + L + GH S + ++ + ++ + N D R++ V RGH
Sbjct: 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK---VADCRGH 881
Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326
V G+ +S G + +D + +W+ NS L++ V F
Sbjct: 882 LSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI----VLKQEIDVV-------F 930
Query: 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLT 386
Q N R ++ TG ++ + C L E + G +
Sbjct: 931 QENETMVLAVDNIRGLQLIAGKTGQ-IDYLPEAQVSCCCLSPHLE---YVAFGDEDGAIK 986
Query: 387 LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
+ + P+ + GH V + + DG T+ S++ D ++ WN
Sbjct: 987 IIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 71/185 (38%), Gaps = 13/185 (7%)
Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
GH + V ++++A G+ L S D+++ +W N T L+ H VK
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVW-------NWQTGDYVFLQAHQETVKDFRLL 1053
Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384
S LL+ G +K WN TG T Q L + S
Sbjct: 1054 Q-DSRLLSWSFDGT---VKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKT 1108
Query: 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444
+W + + + EL GH V A S DG +A+ + +R WNV Q++ AP
Sbjct: 1109 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV-SDGQLLHSCAP 1167
Query: 445 KPNRE 449
E
Sbjct: 1168 ISVEE 1172
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 20/96 (20%)
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLH-----RLEEHTSA- 317
+GHN V +S G LA+G ++ + IW+ S Q LH +EE T+
Sbjct: 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG------QLLHSCAPISVEEGTATH 1177
Query: 318 ---VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350
V + + P L++ GG +K+WN TG
Sbjct: 1178 GGWVTDVCFSPDSKTLVSAGGY-----LKWWNVATG 1208
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 124/299 (41%), Gaps = 30/299 (10%)
Query: 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD 211
S +++ + +T+ +WD G T+ V +++ G+ +A + ++LWD
Sbjct: 121 SVMVSASEDATIKVWDYETGDFER--TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178
Query: 212 STANRQLRTLRG-GHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV 270
+RT+ G H S+ N + + D I +V+ + V+T+ GH + V
Sbjct: 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVKTFTGHREWV 237
Query: 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP---FQ 327
++ + G +AS ND + +W + + L EH V+ I+W P +
Sbjct: 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKA------ELREHRHVVECISWAPESSYS 291
Query: 328 SNLLATGG--------------GGGDRCIKFWNTHTGACLNS-VDTGSQVCALLWNKNER 372
S ATG G D+ IK W+ TG CL + V + V +L++ +
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK 351
Query: 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
+LS L +W Y + M L+ H V + V + + D+T++ W
Sbjct: 352 FILSCAD--DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 90/231 (38%), Gaps = 33/231 (14%)
Query: 224 GHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ 281
GHRS V + ++ ++ + D I D D T +GH V + + SG+
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKL 164
Query: 282 LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341
LAS D + +WD + + + H V +++ P ++++ D+
Sbjct: 165 LASCSADMTIKLWDFQGF------ECIRTMHGHDHNVSSVSIMPNGDHIVS---ASRDKT 215
Query: 342 IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG 401
IK W TG C+ + TG + + N+ L + + +W + AEL
Sbjct: 216 IKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 402 HTSRVLFMAQSPD--------------------GCTVASAAADETLRFWNV 432
H V ++ +P+ G + S + D+T++ W+V
Sbjct: 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWN 368
+ L H S V + + P S +++ D IK W+ TG ++ + +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVS---ASEDATIKVWDYETGDFERTLKGHTDSVQDISF 158
Query: 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLR 428
+ +LL+S + LW + + + GH V ++ P+G + SA+ D+T++
Sbjct: 159 DHSGKLLASCS-ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 429 FWNV 432
W V
Sbjct: 218 MWEV 221
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434
+ +W Y + L GHT V ++ G +AS +AD T++ W+ G
Sbjct: 132 IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 69 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 126
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 127 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 184
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 185 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 235
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 236 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 91
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 144
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 145 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 200
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSAS 106
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 107 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 161
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G R W+T +G CL ++ D
Sbjct: 162 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCLKTLIDDDNPP 216
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 217 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 274
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 275 VSGSEDNLVYIWNL 288
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 75
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 71 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 128
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 129 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 186
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 187 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 237
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 238 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 288
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 289 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 93
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 146
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 147 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 202
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 203 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSAS 108
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 109 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 163
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G + W+T +G CL ++ D
Sbjct: 164 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG---LCRIWDTASGQCLKTLIDDDNPP 218
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 219 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 276
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 277 VSGSEDNLVYIWNL 290
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 77
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 53 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 111 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 169 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 219
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 220 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 75
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 128
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 129 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 184
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 90
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 91 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 145
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G R W+T +G CL ++ D
Sbjct: 146 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCLKTLIDDDNPP 200
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 201 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 259 VSGSEDNLVYIWNL 272
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 50 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 108 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 166 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 216
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 217 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L GH V S+ + N L + D LI D E T GH +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 72
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 125
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 126 VS--GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 181
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 116/264 (43%), Gaps = 20/264 (7%)
Query: 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW- 234
+ T+ V+SV ++P+G +A + +++W + + +T+ GH+ + +AW
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWS 77
Query: 235 -NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293
++++L + D + DV ++T +GH+ V ++ + SG D + I
Sbjct: 78 SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353
WD L L H+ V A+ + S ++++ G R W+T +G CL
Sbjct: 137 WDVKTGMC------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCL 187
Query: 354 NSV--DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFM 409
++ D V + ++ N + +L++ N L LW Y + +GH + +F
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 410 AQSPDGCT-VASAAADETLRFWNV 432
S G + S + D + WN+
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ M L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 53 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 111 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 169 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 219
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 220 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 75
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 128
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 129 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 184
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 90
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 91 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 145
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G R W+T +G CL ++ D
Sbjct: 146 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCLKTLIDDDNPP 200
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 201 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 259 VSGSEDNLVYIWNL 272
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 48 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 105
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 106 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 163
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 164 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 214
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 215 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 266 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 70
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 123
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 124 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 179
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 180 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 85
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 86 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 140
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G R W+T +G CL ++ D
Sbjct: 141 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCLKTLIDDDNPP 195
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 196 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 253
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 254 VSGSEDNLVYIWNL 267
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 379 GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
G TQ++ T K P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 1 GSTQSKPTPVK-PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 54
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 47 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 105 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 163 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 213
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 214 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 265 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 69
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 122
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 123 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 178
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 84
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 85 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 139
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G R W+T +G CL ++ D
Sbjct: 140 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCLKTLIDDDNPP 194
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 195 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 253 VSGSEDNLVYIWNL 266
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 53
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 64 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 121
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 122 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 179
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 180 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 230
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 231 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 282 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 86
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 139
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 140 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 195
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 196 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 101
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 102 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 156
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G R W+T +G CL ++ D
Sbjct: 157 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCLKTLIDDDNPP 211
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 212 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 269
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 270 VSGSEDNLVYIWNL 283
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 372 RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
RE L G TQ++ T K P+ L+GHT V + SP+G +AS++AD+ ++ W
Sbjct: 11 RENLYFQG-TQSKPTPVK-PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG 68
Query: 432 VF 433
+
Sbjct: 69 AY 70
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 47 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 105 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 163 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 213
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 214 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 265 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 69
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 122
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 123 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 178
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 84
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 85 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 139
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G R W+T +G CL ++ D
Sbjct: 140 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCLKTLIDDDNPP 194
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 195 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 253 VSGSEDNLVYIWNL 266
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 53
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 53 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 111 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 169 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 219
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 220 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 75
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 128
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 129 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 184
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 90
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 91 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 145
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G R W+T +G CL ++ D
Sbjct: 146 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCLKTLIDDDNPP 200
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 201 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 259 VSGSEDNLVYIWNL 272
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 43 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 100
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 101 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 158
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 159 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 209
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 210 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 261 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 65
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 118
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 119 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 174
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 80
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 81 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 135
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G R W+T +G CL ++ D
Sbjct: 136 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCLKTLIDDDNPP 190
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 191 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 248
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 249 VSGSEDNLVYIWNL 262
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 49
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 46 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 103
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 104 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 161
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 162 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 212
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 213 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 264 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 68
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 121
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 122 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 177
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 178 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 83
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 84 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 138
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G R W+T +G CL ++ D
Sbjct: 139 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCLKTLIDDDNPP 193
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 194 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 251
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 252 VSGSEDNLVYIWNL 265
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 52
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 52 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 109
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 110 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 167
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 168 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 218
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 219 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 270 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 74
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 127
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 128 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 183
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 184 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 89
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 90 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 144
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G R W+T +G CL ++ D
Sbjct: 145 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCLKTLIDDDNPP 199
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 200 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 257
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 258 VSGSEDNLVYIWNL 271
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 58
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 50 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 108 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-MCLKTLPAHSDPVSAVHFNRDGS 165
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 166 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 216
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 217 NDLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 116/264 (43%), Gaps = 20/264 (7%)
Query: 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW- 234
+ T+ V+SV ++P+G +A + +++W + + +T+ GH+ + +AW
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWS 77
Query: 235 -NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293
++++L + D + DV ++T +GH+ V ++ + SG D + I
Sbjct: 78 SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353
WD L L H+ V A+ + S ++++ G R W+T +G CL
Sbjct: 137 WDVKTGMC------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR---IWDTASGQCL 187
Query: 354 NSV--DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFM 409
++ D V + ++ N + +L++ N L LW Y + +GH + +F
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAAT--LDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 410 AQSPDGCT-VASAAADETLRFWNV 432
S G + S + D + WN+
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 93/222 (41%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L GH V S+ + N L + D LI D E T GH +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 72
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 125
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 126 VS--GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 181
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D L+ W+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ M L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 50 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 108 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 166 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 216
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 217 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ W
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L D LI D E T GH +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLI--KIWGAYDGKFEKTISGHKLGIS 72
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 125
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 126 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 181
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 87
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 88 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 142
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G + W+T +G CL ++ D
Sbjct: 143 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG---LCRIWDTASGQCLKTLIDDDNPP 197
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 198 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 256 VSGSEDNLVYIWNL 269
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ--VCALLWN 368
L HT AV ++ + P L A+ D+ IK W + G ++ +G + + + W+
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSA---DKLIKIWGAYDGKFEKTI-SGHKLGISDVAWS 77
Query: 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLR 428
+ L+S+ L +W S + L GH++ V +P + S + DE++R
Sbjct: 78 SDSNLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 429 FWNV 432
W+V
Sbjct: 136 IWDV 139
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +A+++AD+ ++ W +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY 56
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 23/242 (9%)
Query: 227 SRVGSLAWN--NHILTTGGMDGLI----INNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
SR LAWN +L + G D I D + ++ GH + V + WS G
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS--EGHQRTVRKVAWSPCGN 74
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR 340
LAS D IW ++ VT LE H + VK++AW P NLLAT D+
Sbjct: 75 YLASASFDATTCIWKKNQDDFECVTT----LEGHENEVKSVAWAP-SGNLLATCSR--DK 127
Query: 341 CIKFWNTHTG---ACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQN-QLTLWKYPSMVK 395
+ W C++ +++ +Q V ++W+ ++ ELL+S + +L + V
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC 186
Query: 396 MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF--GAPQVISKSAPKPNREPFAQ 453
A L GH S V +A P G +AS + D T+R W + G Q ++ S P+ +
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246
Query: 454 LN 455
L+
Sbjct: 247 LS 248
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 17/200 (8%)
Query: 153 NVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLW- 210
N LA A +T +W + + T++ V SV WAP G +A + V +W
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 211 -DSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHI-VETYRGH 266
D + ++ H V + W+ +L + D + D + T GH
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH 193
Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIW-------DRSMASSNSVTQW--LHRLEE-HTS 316
V L + SGQ+LAS +D + IW ++ +A S S W + L H+
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR 253
Query: 317 AVKAIAWCPFQSNLLATGGG 336
+ IAWC + LAT G
Sbjct: 254 TIYDIAWCQL-TGALATACG 272
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 50 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 108 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 166 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 216
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 217 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ +
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 72
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 125
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 126 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 181
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 87
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 88 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 142
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G + W+T +G CL ++ D
Sbjct: 143 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG---LCRIWDTASGQCLKTLIDDDNPP 197
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 198 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 256 VSGSEDNLVYIWNL 269
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
+ +W A DG + T+ ++ V W+ D + ++ +++WD ++ + L+TL+
Sbjct: 50 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
GH + V +N ++++ +G D + DV+ ++T H+ V + ++ G
Sbjct: 108 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
+ S D L IWD + Q L L ++ V + + P +LA D
Sbjct: 166 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 216
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
+K W+ G CL + TG +KNE+ + ++ G N + +W
Sbjct: 217 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
+ + +L GHT V+ A P +ASAA D+T++ +
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEVC 271
N L+ GH V S+ + N L + D LI D E T GH +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI--KIWGAYDGKFEKTISGHKLGIS 72
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ WS+ L S +D L IWD S + L L+ H++ V + P QSNL+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNP-QSNLI 125
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKY 390
+ G D ++ W+ TG CL ++ S V A+ +N++ ++SS +W
Sbjct: 126 VS--GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDT 181
Query: 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
S + L V F+ SP+G + +A D TL+ W+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 114/254 (44%), Gaps = 20/254 (7%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V+SV ++P+G +A + +++W + + +T+ GH+ + +AW ++++L +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSAS 87
Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
D + DV ++T +GH+ V ++ + SG D + IWD
Sbjct: 88 DDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 142
Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQ 361
+ L L H+ V A+ + S ++++ G + W+T +G CL ++ D
Sbjct: 143 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG---LCRIWDTASGQCLKTLIDDDNPP 197
Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPDGCT-V 418
V + ++ N + +L++ N L LW Y + +GH + +F S G +
Sbjct: 198 VSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 419 ASAAADETLRFWNV 432
S + D + WN+
Sbjct: 256 VSGSEDNLVYIWNL 269
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
P+ L+GHT V + SP+G +AS++AD+ ++ W +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 119/291 (40%), Gaps = 54/291 (18%)
Query: 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLW-------------DSTANRQLRTLRGGHRS 227
D V V ++ DG ++A G N Q++ DS AN+ L
Sbjct: 62 DHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 120
Query: 228 ------RVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ 281
R + + L TG D LI D+ R IV +GH Q++ L + SG +
Sbjct: 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDK 179
Query: 282 LASGGNDNLLHIWD-RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR 340
L SG D + IWD R+ S +++ +E+ V +A P +A G DR
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLS-----IED---GVTTVAVSPGDGKYIA--AGSLDR 229
Query: 341 CIKFWNTHTGACLNSVDTGSQ--------VCALLWNKNERELLSSHGFTQNQLTLW---- 388
++ W++ TG + +D+ ++ V ++++ ++ + ++S G + LW
Sbjct: 230 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS--GSLDRSVKLWNLQN 287
Query: 389 -------KYP-SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
K P S GH VL +A + + + S + D + FW+
Sbjct: 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 34/200 (17%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRT 220
TV +WD G S ++++D VT+V +P DG++IA G + V++WDS +
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 221 LRG------GHRSRVGSLAW--NNHILTTGGMDGLI----INNDVRVRDHIVE------- 261
L GH+ V S+ + + + +G +D + + N D
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI 321
TY GH V + + + + + SG D + WD+ + L L+ H ++V ++
Sbjct: 305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP------LLMLQGHRNSVISV 358
Query: 322 AWCPFQS-----NLLATGGG 336
A S N+ ATG G
Sbjct: 359 AVANGSSLGPEYNVFATGSG 378
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)
Query: 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLR 219
+T+ +WD G ++ G V +V DGR + G + V++WD L
Sbjct: 219 ATLRVWDIETGQCLHVLM-----GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 273
Query: 220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279
TL+ GH +RV SL ++ + +G +D I DV + + T GH G++
Sbjct: 274 TLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGME--LKD 329
Query: 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339
L SG D+ + IWD + Q L +H SAV + F N + T G
Sbjct: 330 NILVSGNADSTVKIWD---IKTGQCLQTLQGPNKHQSAVTCL---QFNKNFVITSSDDGT 383
Query: 340 RCIKFWNTHTGACLNSVDT 358
+K W+ TG + ++ T
Sbjct: 384 --VKLWDLKTGEFIRNLVT 400
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 22/239 (9%)
Query: 195 GRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR 254
G I G ++ +++W + + LRTL GH V S ++I+ +G D + +
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 187
Query: 255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH 314
+ + T GH V + +++ SG D L +WD Q LH L H
Sbjct: 188 TGE-CIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG------QCLHVLMGH 238
Query: 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-QVCALLWNKNERE 373
+AV+ + Q + G D +K W+ T CL+++ + +V +L ++
Sbjct: 239 VAAVRCV-----QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG---- 289
Query: 374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
+ G + +W + + L+GH S M + + S AD T++ W++
Sbjct: 290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDI 346
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320
+ +GH+ V G ++ SG +DN L +W S + L L HT V +
Sbjct: 112 KVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVW------SAVTGKCLRTLVGHTGGVWS 164
Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQVCALLWNKNERELLSSH 378
+ N++ +G DR +K WN TG C++++ T + C L +E+ ++S
Sbjct: 165 ---SQMRDNIIISGST--DRTLKVWNAETGECIHTLYGHTSTVRCMHL---HEKRVVS-- 214
Query: 379 GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
G L +W + + L GH + V + DG V S A D ++ W+
Sbjct: 215 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD 265
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 121/305 (39%), Gaps = 48/305 (15%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
T+ +WD + ++T G V + + D R I G ++ V++WD L TL
Sbjct: 154 TIKIWDKNTLECKRILT--GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL 209
Query: 222 RGGHRSRVGSLAWNNHILTTGGMDGLII------NNDVRVRDHIVETYRGHNQEVCGLKW 275
H V L +NN ++ T D I D+ +R +V GH V + +
Sbjct: 210 -IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV----GHRAAVNVVDF 264
Query: 276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335
+ + S D + +W+ S +++ L H + IA ++ L+ +G
Sbjct: 265 D--DKYIVSASGDRTIKVWN------TSTCEFVRTLNGHK---RGIACLQYRDRLVVSGS 313
Query: 336 GGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK 395
D I+ W+ GACL ++ ++ + N+R + G ++ +W + +
Sbjct: 314 S--DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV---SGAYDGKIKVWDLVAALD 368
Query: 396 ------------MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA 443
+ E SG R+ F D + S++ D+T+ W+ P ++
Sbjct: 369 PRAPAGTLCLRTLVEHSGRVFRLQF-----DEFQIVSSSHDDTILIWDFLNDPAAQAEPP 423
Query: 444 PKPNR 448
P+R
Sbjct: 424 RSPSR 428
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 19/155 (12%)
Query: 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339
Q++ SG DN + IWD++ + L HT +V + + ++ T G D
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRI------LTGHTGSVLCLQ---YDERVIIT--GSSD 192
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA-- 397
++ W+ +TG LN++ + L N + S + +W S +
Sbjct: 193 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK---DRSIAVWDMASPTDITLR 249
Query: 398 -ELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
L GH R D + SA+ D T++ WN
Sbjct: 250 RVLVGH--RAAVNVVDFDDKYIVSASGDRTIKVWN 282
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 31/192 (16%)
Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
GH+ V + S+ GQ SG D L +WD + S R HT V ++A+
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST------RRFVGHTKDVLSVAFS 481
Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384
+++ DR IK WNT G C ++ G + R+ +S F+ N
Sbjct: 482 LDNRQIVS---ASRDRTIKLWNT-LGECKYTISEGGE--------GHRDWVSCVRFSPNT 529
Query: 385 L-------------TLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
L +W + + L+GHT V +A SPDG AS D + W+
Sbjct: 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
Query: 432 VFGAPQVISKSA 443
+ ++ S A
Sbjct: 590 LAEGKKLYSLEA 601
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 111/272 (40%), Gaps = 38/272 (13%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
V V + DG+ G + +++LWD A R G H V S+A+ +N + +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNRQIVSAS 491
Query: 244 MDGLII--NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ--LASGGNDNLLHIWDRSMA 299
D I N + I E GH V +++S + Q + S D + +W+ S
Sbjct: 492 RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC 551
Query: 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG 359
S L HT V +A P +L A+GG G + W+ G L S++
Sbjct: 552 KLRST------LAGHTGYVSTVAVSP-DGSLCASGGKDG--VVLLWDLAEGKKLYSLEAN 602
Query: 360 SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL-------------SGHTS-- 404
S + AL ++ N L ++ T++ + +W S + +L SG +
Sbjct: 603 SVIHALCFSPNRYWLCAA---TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK 659
Query: 405 -RVLFMAQ---SPDGCTVASAAADETLRFWNV 432
+V++ S DG T+ S D +R W +
Sbjct: 660 RKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 21/151 (13%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
TV +W+ S+ T+ G V++V +PDG A G + V LWD ++L +L
Sbjct: 542 TVKVWNLSNCKLRS--TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL 599
Query: 222 RGGHRSRVGSLAWNNHILTTGGMDGL--------IINNDVRVRDHIVETYRGHNQ----- 268
+ N + L G+ I D++V D E + N
Sbjct: 600 EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKV-DLKAEAEKADNSGPAAT 658
Query: 269 -----EVCGLKWSASGQQLASGGNDNLLHIW 294
L WSA G L SG D ++ +W
Sbjct: 659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 15/197 (7%)
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
GH+ V + S +G S D+ L +W+ Q ++ HT V ++A+
Sbjct: 64 EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG------QCQYKFLGHTKDVLSVAF 117
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV----CALLWNKNERELLSSHG 379
P +++ GG D ++ WN G C++++ G+ C + ++ S G
Sbjct: 118 SPDNRQIVS---GGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG 173
Query: 380 FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVI 439
+ N + +W + + +L GHT+ V + SPDG AS+ D R W++ +
Sbjct: 174 W-DNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Query: 440 SKSAPKPNREPFAQLNR 456
+A P + NR
Sbjct: 233 EMAAGAPINQICFSPNR 249
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 163 VYLWDASDGTTSELVT-VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
V +WD + G LVT + VTSV +PDG A + +LWD T L +
Sbjct: 178 VKVWDLATG---RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM 234
Query: 222 RGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN------QEVCGLKW 275
G + N + + G+ I D+ +D IVE H E + W
Sbjct: 235 AAGAPINQICFSPNRYWMCAATEKGIRIF-DLENKDIIVELAPEHQGSKKIVPECVSIAW 293
Query: 276 SASGQQLASGGNDNLLHIWDRS 297
SA G L SG DN++ +W S
Sbjct: 294 SADGSTLYSGYTDNVIRVWGVS 315
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 18/234 (7%)
Query: 207 VQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYR 264
++LW+ N Q + GH V S+A+ +N + +GG D + +V+ +
Sbjct: 91 LRLWN-LQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG 149
Query: 265 GHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA 322
H V +++S S + SGG DNL+ +WD +A+ VT L+ HT+ V ++
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD--LATGRLVTD----LKGHTNYVTSVT 203
Query: 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ 382
P +L A+ G + W+ G L+ + G+ + + ++ N + ++
Sbjct: 204 VSP-DGSLCASSDKDG--VARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGI 260
Query: 383 NQLTLWKYPSMVKMAELSGHTSRVL----FMAQSPDGCTVASAAADETLRFWNV 432
L +V++A + +++ +A S DG T+ S D +R W V
Sbjct: 261 RIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTT 241
V SV ++PD R I G + +++W+ RG H V + + + ++ +
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 242 GGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
GG D L+ D+ +V +GH V + S G AS D + +WD
Sbjct: 172 GGWDNLVKVWDL-ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 119/293 (40%), Gaps = 52/293 (17%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVT---SVNWAPDGRHIAIGL--NNCQVQLWDSTANRQ 217
V +WD+ VT+ P T + +AP G IA G N C V N
Sbjct: 88 VIVWDSFTTNKEHAVTM-----PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN 142
Query: 218 LRTLRGG---HRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271
+ + H + + + ++ N ILT G DG DV +++++ GH +V
Sbjct: 143 MAAKKKSVAMHTNYLSACSFTNSDMQILTASG-DGTCALWDVE-SGQLLQSFHGHGADVL 200
Query: 272 GLKW--SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN 329
L S +G SGG D +WD M S Q + E H S V ++ + P +
Sbjct: 201 CLDLAPSETGNTFVSGGCDKKAMVWD--MRSG----QCVQAFETHESDVNSVRYYP-SGD 253
Query: 330 LLATGGGGG---------DRCIKFWNTHT---GACLNSVDTGSQVCALLWNKNERELLSS 377
A+G DR + ++ + GA +SVD ++ + R L +
Sbjct: 254 AFASGSDDATCRLYDLRADREVAIYSKESIIFGA--SSVD---------FSLSGRLLFA- 301
Query: 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
G+ + +W +++ L GH +RV + SPDG S + D TLR W
Sbjct: 302 -GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 12/219 (5%)
Query: 219 RTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRV--RDHIVETYRGHNQEVCGLK 274
RTL+G H ++V + W + + + DG +I D ++H V V
Sbjct: 58 RTLKG-HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM---PCTWVMACA 113
Query: 275 WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG 334
++ SG +A GG DN ++ + + ++ + HT+ + A C F ++ +
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA---CSFTNSDMQIL 170
Query: 335 GGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM 393
GD W+ +G L S G+ V L +E G + +W S
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 394 VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
+ H S V + P G AS + D T R +++
Sbjct: 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 12/157 (7%)
Query: 162 TVYLWDASDGTTSELVTVDD-----ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR 216
T+ L++ DGT + + D +G V + W+PDG IA + +++W+ +
Sbjct: 213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272
Query: 217 QLRTLRGGHRSRVGSLA--WNNHILTTGGMDGLI--INNDVRVRDHIVETYRGHNQEVCG 272
+T+ G R L W L + +G I +N ++ D + GHN+ +
Sbjct: 273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV---RYGHNKAITA 329
Query: 273 LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLH 309
L SA G+ L S + ++ WD S SN V +H
Sbjct: 330 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 366
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 123/288 (42%), Gaps = 35/288 (12%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA-IGLNN---CQVQLWDS-TANRQ 217
V +WD + T T+ +GPV ++W + + IA +G V L+D+ T+N
Sbjct: 83 VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN 142
Query: 218 LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQEVC 271
L G + S+ + + G D +N V + + T+ H + V
Sbjct: 143 LT----GQARAMNSVDFKPSRPFRIISGSD----DNTVAIFEGPPFKFKSTFGEHTKFVH 194
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQ--WLHRLEEHTSAVKAIAWCPFQSN 329
++++ G AS G D + +++ + V + L + H+ +V + W P +
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA-HSGSVFGLTWSPDGTK 253
Query: 330 LLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV----CALLWNKNERELLSSHGFTQNQL 385
+ + D+ IK WN T ++ G+++ ++W K +S++GF
Sbjct: 254 IAS---ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN--- 307
Query: 386 TLWKYPSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
+ P + + ++ GH + ++ S DG T+ SA A+ + W++
Sbjct: 308 --FVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 13/175 (7%)
Query: 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE----HTS 316
E Y H+ + K S SG ASG + IWD TQ H L+ +
Sbjct: 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD--------TTQTTHILKTTIPVFSG 104
Query: 317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLS 376
VK I+W +S +A G G +R + TG ++ ++ + K R
Sbjct: 105 PVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI 163
Query: 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
G N + +++ P + HT V + +PDG AS D T+ +N
Sbjct: 164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 121/306 (39%), Gaps = 60/306 (19%)
Query: 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ-L 218
G++VY T +E+ T + + T +P G + A G + V++WD+T L
Sbjct: 38 GTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 95
Query: 219 RTLRGGHRSRVGSLAWNNH---ILTTG-GMD--GLIINNDVRVRDHIVETYRGHNQEVCG 272
+T V ++W++ I G G + G + D + G + +
Sbjct: 96 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN---GNLTGQARAMNS 152
Query: 273 LKWSASGQ-QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
+ + S ++ SG +DN + I++ ++ EHT V ++ + P S
Sbjct: 153 VDFKPSRPFRIISGSDDNTVAIFE------GPPFKFKSTFGEHTKFVHSVRYNPDGSLFA 206
Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391
+TGG G +L+N G + +++
Sbjct: 207 STGGDG-------------------------TIVLYN----------GVDGTKTGVFEDD 231
Query: 392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPF 451
S+ +A H+ V + SPDG +ASA+AD+T++ WNV A + K+ P R
Sbjct: 232 SLKNVA----HSGSVFGLTWSPDGTKIASASADKTIKIWNV--ATLKVEKTIPVGTRIED 285
Query: 452 AQLNRI 457
QL I
Sbjct: 286 QQLGII 291
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 194 DGRHIAIGLNNCQVQLW--DSTANRQLRTLRGGHRSRVGSLAWNNH--ILTTGGMDGLII 249
D + +A+G + +V ++ + +++T+ H + + S+A++N+ L +I
Sbjct: 459 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVATDQSRKVI 516
Query: 250 NNDVRVRDHIVET--YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW 307
V + T + H +V + WS +LA+G DN + +W+ + S + +
Sbjct: 517 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI--- 573
Query: 308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN 346
+ + S+V ++ W N G D IKFWN
Sbjct: 574 IIKGAHAMSSVNSVIWL----NETTIVSAGQDSNIKFWN 608
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 25/245 (10%)
Query: 214 ANRQLRTLRG---GHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI----VETY 263
A+ ++ LRG GH V SLA + ++L + D +I+ + D V ++
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
+GH+ V +A G S D L +WD + + R H S V ++
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVMSVDI 115
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLSSHG 379
S +++ G D+ IK W T G CL ++ D SQV + K + + ++
Sbjct: 116 DKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 380 FTQNQLT-LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438
+++ W A+ GH S + + SPDG +ASA D + WN+ +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 439 ISKSA 443
+ SA
Sbjct: 232 YTLSA 236
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILT 240
N + ++ +PDG IA + ++ LW+ A + + TL + V SLA+ N + L
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLA 253
Query: 241 TGGMDGL-IINNDVR-VRDHIVETYRGHNQ----EVCGLKWSASGQQLASGGNDNLLHIW 294
G+ + + D + + D + + G+++ L WSA GQ L +G DN++ +W
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 25/242 (10%)
Query: 207 VQLWDSTANRQLRTLRGGHRSRVGSLAWNNH--ILTTGGMDGLIINNDVRVRDHIVETYR 264
++LWD + G H+S V S+ + ++ +G D I ++ + T
Sbjct: 89 LRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGSRDKTI--KVWTIKGQCLATLL 145
Query: 265 GHNQEVCGL------KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV 318
GHN V + K + S GND ++ W+ + + H S +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA------DFIGHNSNI 199
Query: 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH 378
+ P L+A+ G G+ I WN + ++ +V +L ++ N L ++
Sbjct: 200 NTLTASP-DGTLIASAGKDGE--IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT 256
Query: 379 GFTQNQLTL-WKYPSMVKMAELSGHTS----RVLFMAQSPDGCTVASAAADETLRFWNVF 433
+L +Y E +G++ + +A S DG T+ + D +R W V
Sbjct: 257 ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Query: 434 GA 435
A
Sbjct: 317 TA 318
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 25/245 (10%)
Query: 214 ANRQLRTLRG---GHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI----VETY 263
A+ ++ LRG GH V SLA + ++L + D +I+ + D V ++
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
+GH+ V +A G S D L +WD + + R H S V ++
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVMSVDI 115
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLSSHG 379
S +++ G D+ IK W T G CL ++ D SQV + K + + ++
Sbjct: 116 DKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 380 FTQNQLT-LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438
+++ W A+ GH S + + SPDG +ASA D + WN+ +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 439 ISKSA 443
+ SA
Sbjct: 232 YTLSA 236
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILT 240
N + ++ +PDG IA + ++ LW+ A + + TL + V SLA+ N + L
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLA 253
Query: 241 TGGMDGL-IINNDVR-VRDHIVETYRGHNQ----EVCGLKWSASGQQLASGGNDNLLHIW 294
G+ + + D + + D + + G+++ L WSA GQ L +G DN++ +W
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 91/237 (38%), Gaps = 25/237 (10%)
Query: 207 VQLWDSTANRQLRTLRGGHRSRVGSLAWNNH--ILTTGGMDGLIINNDVRVRDHIVETYR 264
++LWD + G H+S V S+ + ++ +G D I ++ + T
Sbjct: 89 LRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGSRDKTI--KVWTIKGQCLATLL 145
Query: 265 GHNQEVCGL------KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV 318
GHN V + K + S GND ++ W+ + + H S +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA------DFIGHNSNI 199
Query: 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH 378
+ P L+A+ G G+ I WN + ++ +V +L ++ N L ++
Sbjct: 200 NTLTASP-DGTLIASAGKDGE--IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT 256
Query: 379 GFTQNQLTL-WKYPSMVKMAELSGHTS----RVLFMAQSPDGCTVASAAADETLRFW 430
+L +Y E +G++ + +A S DG T+ + D +R W
Sbjct: 257 ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 25/245 (10%)
Query: 214 ANRQLRTLRG---GHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI----VETY 263
A+ ++ LRG GH V SLA + ++L + D +I+ + D V ++
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
+GH+ V +A G S D L +WD + + R H S V ++
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVMSVDI 115
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLSSHG 379
S +++ G D+ IK W T G CL ++ D SQV + K + + ++
Sbjct: 116 DKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 380 FTQNQLT-LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438
+++ W A+ GH S + + SPDG +ASA D + WN+ +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 439 ISKSA 443
+ SA
Sbjct: 232 YTLSA 236
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILT 240
N + ++ +PDG IA + ++ LW+ A + + TL + V SLA+ N + L
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLA 253
Query: 241 TGGMDGL-IINNDVR-VRDHIVETYRGHNQ----EVCGLKWSASGQQLASGGNDNLLHIW 294
G+ + + D + + D + + G+++ L WSA GQ L +G DN++ +W
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 25/242 (10%)
Query: 207 VQLWDSTANRQLRTLRGGHRSRVGSLAWNNH--ILTTGGMDGLIINNDVRVRDHIVETYR 264
++LWD + G H+S V S+ + ++ +G D I ++ + T
Sbjct: 89 LRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGSRDKTI--KVWTIKGQCLATLL 145
Query: 265 GHNQEVCGL------KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV 318
GHN V + K + S GND ++ W+ + + H S +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA------DFIGHNSNI 199
Query: 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH 378
+ P L+A+ G G+ I WN + ++ +V +L ++ N L ++
Sbjct: 200 NTLTASP-DGTLIASAGKDGE--IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT 256
Query: 379 GFTQNQLTLW-KYPSMVKMAELSGHTS----RVLFMAQSPDGCTVASAAADETLRFWNVF 433
+L +Y E +G++ + +A S DG T+ + D +R W V
Sbjct: 257 ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Query: 434 GA 435
A
Sbjct: 317 TA 318
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 25/245 (10%)
Query: 214 ANRQLRTLRG---GHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI----VETY 263
A+ ++ LRG GH V SLA + ++L + D +I+ + D V ++
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
+GH+ V +A G S D L +WD + + R H S V ++
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVMSVDI 115
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLSSHG 379
S +++ G D+ IK W T G CL ++ D SQV + K + + ++
Sbjct: 116 DKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 380 FTQNQLT-LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438
+++ W A+ GH S + + SPDG +ASA D + WN+ +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 439 ISKSA 443
+ SA
Sbjct: 232 YTLSA 236
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILT 240
N + ++ +PDG IA + ++ LW+ A + + TL + V SLA+ N + L
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLA 253
Query: 241 TGGMDGL-IINNDVR-VRDHIVETYRGHNQ----EVCGLKWSASGQQLASGGNDNLLHIW 294
G+ + + D + + D + + G++ L WSA GQ L +G DN++ +W
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 25/242 (10%)
Query: 207 VQLWDSTANRQLRTLRGGHRSRVGSLAWNNH--ILTTGGMDGLIINNDVRVRDHIVETYR 264
++LWD + G H+S V S+ + ++ +G D I ++ + T
Sbjct: 89 LRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGSRDKTI--KVWTIKGQCLATLL 145
Query: 265 GHNQEVCGL------KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV 318
GHN V + K + S GND ++ W+ + + H S +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA------DFIGHNSNI 199
Query: 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH 378
+ P L+A+ G G+ I WN + ++ +V +L ++ N L ++
Sbjct: 200 NTLTASP-DGTLIASAGKDGE--IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT 256
Query: 379 GFTQNQLTLW-KYPSMVKMAELSGHTS----RVLFMAQSPDGCTVASAAADETLRFWNVF 433
+L +Y E +G+++ + +A S DG T+ + D +R W V
Sbjct: 257 ATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Query: 434 GA 435
A
Sbjct: 317 TA 318
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 91/242 (37%), Gaps = 41/242 (16%)
Query: 217 QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETY----RGHNQEVCG 272
Q TLRG S + L + ++ + TG D +I RV D I + + GH+ V
Sbjct: 113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMI-----RVYDSINKKFLLQLSGHDGGVWA 167
Query: 273 LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332
LK+ A G L SG D + +WD H E H S V+ + ++ N+
Sbjct: 168 LKY-AHGGILVSGSTDRTVRVWDIKKGCCT------HVFEGHNSTVRCLDIVEYK-NIKY 219
Query: 333 TGGGGGDRCIKFWNTHTGACLNSVDTGSQ----------------VCALLWNKNERELLS 376
G D + W + + D G + V L + +S
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVP--DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 277
Query: 377 SH------GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
H G N L +W M + LSGHT R+ + SA+ D T+R W
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Query: 431 NV 432
++
Sbjct: 338 DL 339
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 107/256 (41%), Gaps = 32/256 (12%)
Query: 197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRV 255
++ G ++ ++++DS + L L GH V +L + + IL +G D + D++
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK- 191
Query: 256 RDHIVETYRGHNQEVCGLKWSASG--QQLASGGNDNLLHIWDRSMASS-------NSVTQ 306
+ + GHN V L + + +G DN LH+W SS +
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 307 WLHRLEE----------HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV 356
H EE H ++V+ ++ N++ + G D + W+ CL +
Sbjct: 252 VFHTPEENPYFVGVLRGHMASVRTVSG---HGNIVVS--GSYDNTLIVWDVAQMKCLYIL 306
Query: 357 DTGS-QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG 415
+ ++ + +++ + +S+ + +W + M L GHT+ V + S
Sbjct: 307 SGHTDRIYSTIYDHERKRCISAS--MDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK- 363
Query: 416 CTVASAAADETLRFWN 431
+ SAAAD ++R W+
Sbjct: 364 -FLVSAAADGSIRGWD 378
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 27/235 (11%)
Query: 214 ANRQLRTLRG---GHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI----VETY 263
A+ ++ LRG GH V SLA + ++L + D +I+ + D V ++
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
+GH+ V +A G S D L +WD + + R H S V ++
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVXSVDI 115
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLS--S 377
S +++ G D+ IK W T G CL ++ D SQV + K + + ++ S
Sbjct: 116 DKKASXIIS---GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
G + W A+ GH S + + SPDG +ASA D + WN+
Sbjct: 172 AG-NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILT 240
N + ++ +PDG IA + ++ LW+ A + TL + V SLA+ N + L
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA--QDEVFSLAFSPNRYWLA 253
Query: 241 TGGMDGL-IINNDVR-VRDHIVETYRGHNQ----EVCGLKWSASGQQLASGGNDNLLHIW 294
G+ + + D + + D + + G+++ L WSA GQ L +G DN++ +W
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 22/238 (9%)
Query: 218 LRTLRGGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI----VETYRGHNQEV 270
LR GH V SLA + ++L + D +I+ + D V +++GH+ V
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330
+A G S D L +WD + + R H S V ++ S +
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVMSVDIDKKASMI 116
Query: 331 LATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLSSHGFTQNQLT 386
++ G D+ IK W T G CL ++ D SQV + K + + ++ +++
Sbjct: 117 IS---GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 172
Query: 387 -LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA 443
W A+ GH S + + SPDG +ASA D + WN+ + + SA
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILT 240
N + ++ +PDG IA + ++ LW+ A + + TL + V SLA+ N + L
Sbjct: 190 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLA 247
Query: 241 TGGMDGL-IINNDVR-VRDHIVETYRGHNQ----EVCGLKWSASGQQLASGGNDNLLHIW 294
G+ + + D + + D + + G+++ L WSA GQ L +G DN++ +W
Sbjct: 248 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 25/242 (10%)
Query: 207 VQLWDSTANRQLRTLRGGHRSRVGSLAWNNH--ILTTGGMDGLIINNDVRVRDHIVETYR 264
++LWD + G H+S V S+ + ++ +G D I ++ + T
Sbjct: 83 LRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGSRDKTI--KVWTIKGQCLATLL 139
Query: 265 GHNQEVCGL------KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV 318
GHN V + K + S GND ++ W+ + + H S +
Sbjct: 140 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA------DFIGHNSNI 193
Query: 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH 378
+ P L+A+ G G+ I WN + ++ +V +L ++ N L ++
Sbjct: 194 NTLTASP-DGTLIASAGKDGE--IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT 250
Query: 379 GFTQNQLTLW-KYPSMVKMAELSGHTS----RVLFMAQSPDGCTVASAAADETLRFWNVF 433
+L +Y E +G++ + +A S DG T+ + D +R W V
Sbjct: 251 ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 310
Query: 434 GA 435
A
Sbjct: 311 TA 312
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 25/211 (11%)
Query: 184 GPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRG----GHRSRVGSLAWNN-- 236
G +S + PD + G + LWD T +++ GH + V SL+ N+
Sbjct: 158 GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217
Query: 237 -HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
++ +G D + D+R+ V TY GH ++ +K+ GQ+ +G +D ++D
Sbjct: 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
Query: 296 -RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCI------------ 342
R+ + R + V ++A+ LL G GD +
Sbjct: 278 MRTGHQLQVYNREPDRNDNELPIVTSVAF-SISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336
Query: 343 -KFWNTHTG--ACLNSVDTGSQVCALLWNKN 370
N+H G +CL GS +C W+KN
Sbjct: 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKN 367
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT-QWLHRLEEHTSAVKA 320
T +GH+ +V L W+ + S D L +W N++T Q H ++ H V
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW-------NALTSQKTHAIKLHCPWVME 113
Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGA------CLNSVDTG----SQVCALLWNKN 370
C F N + GG D +N + A ++ V TG + C + ++
Sbjct: 114 ---CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 371 ERELLSSHGFTQNQLTLWKYPSMVKMAEL-----SGHTSRVLFMA-QSPDGCTVASAAAD 424
R L++ G LW + +++ SGHT+ VL ++ S + S + D
Sbjct: 171 TR-LITGSG--DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227
Query: 425 ETLRFWNV 432
T+R W++
Sbjct: 228 TTVRLWDL 235
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHIL--TT 241
G + +V +PDG A G + Q LWD + L TL GG + N + L T
Sbjct: 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT 275
Query: 242 G------GMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
G ++G II ++++ ++ I + + + L WSA GQ L +G DNL+ +W
Sbjct: 276 GPSIKIWDLEGKIIVDELK-QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
Query: 296 RSMAS 300
++ +
Sbjct: 335 VTIGT 339
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 56/219 (25%)
Query: 263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA 322
+ GH ++V + +S+ +Q+ SG D + +W+ + V ++ + E H+ V +
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVR 178
Query: 323 WCPFQSNLLATGGGGGDRCIKFWNT-----------HTGACLNSVDT----------GSQ 361
+ P SN + G D+ +K WN HTG LN+V G
Sbjct: 179 FSPNSSNPIIV-SCGWDKLVKVWNLANCKLKTNHIGHTGY-LNTVTVSPDGSLCASGGKD 236
Query: 362 VCALLWNKNE---------RELLSSHGFTQNQ----------LTLWKYPSMVKMAEL--- 399
A+LW+ NE +++++ F+ N+ + +W + + EL
Sbjct: 237 GQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQE 296
Query: 400 ------SGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
+ +A S DG T+ + D +R W V
Sbjct: 297 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 38/246 (15%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
T+ LWD + GTT+ ++ V SV ++ D R I G + ++LW++ +
Sbjct: 109 TLRLWDLTTGTTTRRFVGHTKD--VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166
Query: 222 RGGHRSRVGSLAW----NNHILTTGGMDGLI----INNDVRVRDHIVETYRGHNQEVCGL 273
H V + + +N I+ + G D L+ + N +HI GH + +
Sbjct: 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-----GHTGYLNTV 221
Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
S G ASGG D +WD + L+ L+ + A+ + P + L A
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLNEGKH------LYTLDGG-DIINALCFSPNRYWLCAA 274
Query: 334 GGGGGDRCIKFWNTHTGACLNS-----VDTGS-----QVCALLWNKNERELLSSHGFTQN 383
G IK W+ ++ + T S Q +L W+ + + L + G+T N
Sbjct: 275 TG----PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA--GYTDN 328
Query: 384 QLTLWK 389
+ +W+
Sbjct: 329 LVRVWQ 334
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435
L LW + GHT VL +A S D + S + D+T++ WN G
Sbjct: 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 160
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHIL--TT 241
G + +V +PDG A G + Q LWD + L TL GG + N + L T
Sbjct: 193 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT 252
Query: 242 G------GMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
G ++G II ++++ ++ I + + + L WSA GQ L +G DNL+ +W
Sbjct: 253 GPSIKIWDLEGKIIVDELK-QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
Query: 296 RSMAS 300
++ +
Sbjct: 312 VTIGT 316
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 56/219 (25%)
Query: 263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA 322
+ GH ++V + +S+ +Q+ SG D + +W+ + V ++ + E H+ V +
Sbjct: 101 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVR 155
Query: 323 WCPFQSNLLATGGGGGDRCIKFWNT-----------HTGACLNSVDT----------GSQ 361
+ P SN + G D+ +K WN HTG LN+V G
Sbjct: 156 FSPNSSNPIIV-SCGWDKLVKVWNLANCKLKTNHIGHTGY-LNTVTVSPDGSLCASGGKD 213
Query: 362 VCALLWNKNE---------RELLSSHGFTQNQ----------LTLWKYPSMVKMAEL--- 399
A+LW+ NE +++++ F+ N+ + +W + + EL
Sbjct: 214 GQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQE 273
Query: 400 ------SGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
+ +A S DG T+ + D +R W V
Sbjct: 274 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 38/246 (15%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
T+ LWD + GTT+ ++ V SV ++ D R I G + ++LW++ +
Sbjct: 86 TLRLWDLTTGTTTRRFVGHTKD--VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 143
Query: 222 RGGHRSRVGSLAW----NNHILTTGGMDGLI----INNDVRVRDHIVETYRGHNQEVCGL 273
H V + + +N I+ + G D L+ + N +HI GH + +
Sbjct: 144 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-----GHTGYLNTV 198
Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
S G ASGG D +WD + L+ L+ + A+ + P + L A
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLNEGKH------LYTLDGG-DIINALCFSPNRYWLCAA 251
Query: 334 GGGGGDRCIKFWNTHTGACLNS-----VDTGS-----QVCALLWNKNERELLSSHGFTQN 383
G IK W+ ++ + T S Q +L W+ + + L + G+T N
Sbjct: 252 TGPS----IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA--GYTDN 305
Query: 384 QLTLWK 389
+ +W+
Sbjct: 306 LVRVWQ 311
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435
L LW + GHT VL +A S D + S + D+T++ WN G
Sbjct: 87 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 137
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 117/269 (43%), Gaps = 43/269 (15%)
Query: 215 NRQLRTLRGGHRSRVGSLAWNNHI---LTTGGMDGLIINNDVRV---RDHIVET---YRG 265
N LR LRG + G L+WN ++ L + D I D+ +V+ + G
Sbjct: 168 NPDLR-LRGHQKEGYG-LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTG 225
Query: 266 HNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
H V + W + L S +D L IWD SN+ ++ H ++ HT+ V +++
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWD---TRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGAC-LNSVDT-GSQVCALLWNKNERELLSSHGFTQ 382
P+ +LAT G D+ + W+ L+S ++ ++ + W+ + +L+S G T
Sbjct: 283 PYSEFILAT--GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TD 339
Query: 383 NQLTLWKYPSMVKMAEL-----------------SGHTSRVLFMAQSP-DGCTVASAAAD 424
+L +W + K+ E GHT+++ + +P + + S + D
Sbjct: 340 RRLNVW---DLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 396
Query: 425 ETLRFWNVFGAPQVISKSAPKPNREPFAQ 453
++ W + A + + P+ + +P Q
Sbjct: 397 NIMQVWQM--AENIYNDEDPEGSVDPEGQ 423
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 9/176 (5%)
Query: 264 RGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWD-RSMASSNSVTQWLHRLEEHTSAVKAI 321
RGH +E GL W+ + L S +D+ + +WD + + V + HT+ V+ +
Sbjct: 180 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 239
Query: 322 AWCPFQSNLLATGGGGGDRCIKFWNT---HTGACLNSVDTGSQVCALLWNKNERELLSSH 378
AW +L G D+ + W+T +T ++VD + L E + +
Sbjct: 240 AWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 379 GFTQNQLTLWKYPSM-VKMAELSGHTSRVLFMAQSPDGCTV-ASAAADETLRFWNV 432
G + LW ++ +K+ H + + SP T+ AS+ D L W++
Sbjct: 298 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 39/251 (15%)
Query: 224 GHRSRVGSLAWN---NHILTTGGMDGLIINNDVRV--RDHIV----ETYRGHNQEVCGLK 274
GH+ L+WN N L + D I D+ ++H V + GH V +
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 275 WSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
W + L S +D L IWD +N+ ++ H ++ HT+ V +++ P+ +LAT
Sbjct: 241 WHLLHESLFGSVADDQKLMIWD---TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 334 GGGGGDRCIKFWNTHTGAC-LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKY- 390
G D+ + W+ L+S ++ ++ + W+ + +L+S G T +L +W
Sbjct: 298 --GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWDLS 354
Query: 391 ---------------PSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFG 434
P ++ + GHT+++ + +P + + S + D ++ W +
Sbjct: 355 KIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM-- 410
Query: 435 APQVISKSAPK 445
A V + P+
Sbjct: 411 AENVYNDEEPE 421
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 9/176 (5%)
Query: 264 RGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWD-RSMASSNSVTQWLHRLEEHTSAVKAI 321
RGH +E GL W+ + L S +D+ + +WD + + V + HT+ V+ +
Sbjct: 178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 237
Query: 322 AWCPFQSNLLATGGGGGDRCIKFWNT---HTGACLNSVDTGSQVCALLWNKNERELLSSH 378
AW +L G D+ + W+T +T ++VD + L E + +
Sbjct: 238 AWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 379 GFTQNQLTLWKYPSM-VKMAELSGHTSRVLFMAQSPDGCTV-ASAAADETLRFWNV 432
G + LW ++ +K+ H + + SP T+ AS+ D L W++
Sbjct: 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 39/251 (15%)
Query: 224 GHRSRVGSLAWN---NHILTTGGMDGLIINNDVRV--RDHIV----ETYRGHNQEVCGLK 274
GH+ L+WN N L + D I D+ ++H V + GH V +
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 275 WSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
W + L S +D L IWD +N+ ++ H ++ HT+ V +++ P+ +LAT
Sbjct: 239 WHLLHESLFGSVADDQKLMIWD---TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 334 GGGGGDRCIKFWNTHTGAC-LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKY- 390
G D+ + W+ L+S ++ ++ + W+ + +L+S G T +L +W
Sbjct: 296 --GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWDLS 352
Query: 391 ---------------PSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFG 434
P ++ + GHT+++ + +P + + S + D ++ W +
Sbjct: 353 KIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM-- 408
Query: 435 APQVISKSAPK 445
A V + P+
Sbjct: 409 AENVYNDEEPE 419
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 89/242 (36%), Gaps = 41/242 (16%)
Query: 217 QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETY----RGHNQEVCG 272
Q TLRG S + L + ++ + TG D I RV D I + + GH+ V
Sbjct: 113 QRTTLRGHXTSVITCLQFEDNYVITGADDKXI-----RVYDSINKKFLLQLSGHDGGVWA 167
Query: 273 LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332
LK+ A G L SG D + +WD H E H S V+ + ++ N+
Sbjct: 168 LKY-AHGGILVSGSTDRTVRVWDIKKGCCT------HVFEGHNSTVRCLDIVEYK-NIKY 219
Query: 333 TGGGGGDRCIKFWNTHTGACLNSVDTGSQ----------------VCALLWNKNERELLS 376
G D + W + + D G + V L + +S
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVP--DHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS 277
Query: 377 SHGFT------QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
HG N L +W + LSGHT R+ + SA+ D T+R W
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
Query: 431 NV 432
++
Sbjct: 338 DL 339
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 107/256 (41%), Gaps = 32/256 (12%)
Query: 197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRV 255
++ G ++ ++++DS + L L GH V +L + + IL +G D + D++
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQL-SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK- 191
Query: 256 RDHIVETYRGHNQEVCGLKWSASG--QQLASGGNDNLLHIWDRSMASS-------NSVTQ 306
+ + GHN V L + + +G DN LH+W SS +
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 307 WLHRLEE----------HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV 356
H EE H ++V+ ++ N++ + G D + W+ CL +
Sbjct: 252 VFHTPEENPYFVGVLRGHXASVRTVSG---HGNIVVS--GSYDNTLIVWDVAQXKCLYIL 306
Query: 357 DTGS-QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG 415
+ ++ + +++ + +S+ T + +W + L GHT+ V + S
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASXDT--TIRIWDLENGELXYTLQGHTALVGLLRLSDK- 363
Query: 416 CTVASAAADETLRFWN 431
+ SAAAD ++R W+
Sbjct: 364 -FLVSAAADGSIRGWD 378
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 9/176 (5%)
Query: 264 RGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWD-RSMASSNSVTQWLHRLEEHTSAVKAI 321
RGH +E GL W+ + L S +D+ + +WD + + V + HT+ V+ +
Sbjct: 182 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 241
Query: 322 AWCPFQSNLLATGGGGGDRCIKFWNT---HTGACLNSVDTGSQVCALLWNKNERELLSSH 378
AW +L G D+ + W+T +T ++VD + L E + +
Sbjct: 242 AWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 379 GFTQNQLTLWKYPSM-VKMAELSGHTSRVLFMAQSPDGCTV-ASAAADETLRFWNV 432
G + LW ++ +K+ H + + SP T+ AS+ D L W++
Sbjct: 300 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 37/238 (15%)
Query: 224 GHRSRVGSLAWN---NHILTTGGMDGLIINNDVRV--RDHIV----ETYRGHNQEVCGLK 274
GH+ L+WN N L + D I D+ ++H V + GH V +
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 275 WSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
W + L S +D L IWD +N+ ++ H ++ HT+ V +++ P+ +LAT
Sbjct: 243 WHLLHESLFGSVADDQKLMIWD---TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 334 GGGGGDRCIKFWNTHTGAC-LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKY- 390
G D+ + W+ L+S ++ ++ + W+ + +L+S G T +L +W
Sbjct: 300 --GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWDLS 356
Query: 391 ---------------PSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNV 432
P ++ + GHT+++ + +P + + S + D ++ W +
Sbjct: 357 KIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 15/183 (8%)
Query: 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
R++ T RGH ++ + W + L S D L IWD + T +H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD------SYTTNKVHAIPL 95
Query: 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNK 369
+S V A+ P N +A GG I T G S + TG C +
Sbjct: 96 RSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
N ++++S G T LW + + +GHT V+ ++ +PD S A D + +
Sbjct: 155 N--QIVTSSGDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 430 WNV 432
W+V
Sbjct: 211 WDV 213
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 29/295 (9%)
Query: 149 WGSSNVLAIALG--STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNN- 204
WG+ + L ++ + +WD+ TT+++ + + V + +AP G ++A G L+N
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 205 CQV-QLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE 261
C + L N ++ GH + + +N I+T+ G D D+
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETG-QQTT 178
Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR--LEEHTSAVK 319
T+ GH +V L + + SG D +WD V + + R H S +
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD--------VREGMCRQTFTGHESDIN 230
Query: 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALL---WNKNERELLS 376
AI + P N ATG D + ++ L + + +C + ++K+ R LL+
Sbjct: 231 AICFFP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
G+ +W + L+GH +RV + + DG VA+ + D L+ WN
Sbjct: 288 --GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 35/241 (14%)
Query: 216 RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL 273
R RTLRG H +++ ++ W ++ +L + DG +I D + V + V
Sbjct: 46 RTRRTLRG-HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 103
Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF-QSNLLA 332
++ SG +A GG DN+ I++ N L HT + C F N +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVS--RELAGHTGYLSC---CRFLDDNQIV 158
Query: 333 TGGGGGDRCIKFWNT-----------HTGACLNSVDTGSQVCALLWNKNERELLSSHGFT 381
T G D W+ HTG V +L + R +S G
Sbjct: 159 TSSG--DTTCALWDIETGQQTTTFTGHTG----------DVMSLSLAPDTRLFVS--GAC 204
Query: 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441
LW + +GH S + + P+G A+ + D T R +++ ++++
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 442 S 442
S
Sbjct: 265 S 265
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 15/183 (8%)
Query: 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
R++ T RGH ++ + W + L S D L IWD + T +H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD------SYTTNKVHAIPL 95
Query: 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNK 369
+S V A+ P N +A GG I T G S + TG C +
Sbjct: 96 RSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
N ++++S G T LW + + +GHT V+ ++ +PD S A D + +
Sbjct: 155 N--QIVTSSGDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 430 WNV 432
W+V
Sbjct: 211 WDV 213
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 29/295 (9%)
Query: 149 WGSSNVLAIALG--STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNN- 204
WG+ + L ++ + +WD+ TT+++ + + V + +AP G ++A G L+N
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 205 CQV-QLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE 261
C + L N ++ GH + + +N I+T+ G D D+
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETG-QQTT 178
Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR--LEEHTSAVK 319
T+ GH +V L + + SG D +WD V + + R H S +
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD--------VREGMCRQTFTGHESDIN 230
Query: 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALL---WNKNERELLS 376
AI + P N ATG D + ++ L + + +C + ++K+ R LL+
Sbjct: 231 AICFFP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
G+ +W + L+GH +RV + + DG VA+ + D L+ WN
Sbjct: 288 --GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 35/241 (14%)
Query: 216 RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL 273
R RTLRG H +++ ++ W ++ +L + DG +I D + V + V
Sbjct: 46 RTRRTLRG-HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 103
Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF-QSNLLA 332
++ SG +A GG DN+ I++ N L HT + C F N +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVS--RELAGHTGYLSC---CRFLDDNQIV 158
Query: 333 TGGGGGDRCIKFWNT-----------HTGACLNSVDTGSQVCALLWNKNERELLSSHGFT 381
T G D W+ HTG V +L + R +S G
Sbjct: 159 TSSG--DTTCALWDIETGQQTTTFTGHTG----------DVMSLSLAPDTRLFVS--GAC 204
Query: 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441
LW + +GH S + + P+G A+ + D T R +++ ++++
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 442 S 442
S
Sbjct: 265 S 265
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 15/183 (8%)
Query: 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
R++ T RGH ++ + W + L S D L IWD + T +H +
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD------SYTTNKVHAIPL 106
Query: 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNK 369
+S V A+ P N +A GG I T G S + TG C +
Sbjct: 107 RSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 165
Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
N ++++S G T LW + + +GHT V+ ++ +PD S A D + +
Sbjct: 166 N--QIVTSSGDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 221
Query: 430 WNV 432
W+V
Sbjct: 222 WDV 224
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 29/295 (9%)
Query: 149 WGSSNVLAIALG--STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNN- 204
WG+ + L ++ + +WD+ TT+++ + + V + +AP G ++A G L+N
Sbjct: 74 WGTDSRLLVSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 131
Query: 205 CQV-QLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE 261
C + L N ++ GH + + +N I+T+ G D D+
Sbjct: 132 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETG-QQTT 189
Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR--LEEHTSAVK 319
T+ GH +V L + + SG D +WD V + + R H S +
Sbjct: 190 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD--------VREGMCRQTFTGHESDIN 241
Query: 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALL---WNKNERELLS 376
AI + P N ATG D + ++ L + + +C + ++K+ R LL+
Sbjct: 242 AICFFP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 298
Query: 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
G+ +W + L+GH +RV + + DG VA+ + D L+ WN
Sbjct: 299 --GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 35/241 (14%)
Query: 216 RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL 273
R RTLRG H +++ ++ W ++ +L + DG +I D + V + V
Sbjct: 57 RTRRTLRG-HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 114
Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF-QSNLLA 332
++ SG +A GG DN+ I++ N L HT + C F N +
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVS--RELAGHTGYLSC---CRFLDDNQIV 169
Query: 333 TGGGGGDRCIKFWNT-----------HTGACLNSVDTGSQVCALLWNKNERELLSSHGFT 381
T G D W+ HTG V +L + R +S G
Sbjct: 170 TSSG--DTTCALWDIETGQQTTTFTGHTG----------DVMSLSLAPDTRLFVS--GAC 215
Query: 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441
LW + +GH S + + P+G A+ + D T R +++ ++++
Sbjct: 216 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 275
Query: 442 S 442
S
Sbjct: 276 S 276
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 29/295 (9%)
Query: 149 WGSSN--VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNN- 204
WG+ + +L+ + + +WD+ TT+++ + + V + +AP G ++A G L+N
Sbjct: 63 WGTDSRLLLSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 205 CQV-QLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE 261
C + L N ++ GH + + +N I+T+ G D D+
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETG-QQTT 178
Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR--LEEHTSAVK 319
T+ GH +V L + + SG D +WD V + + R H S +
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD--------VREGMCRQTFTGHESDIN 230
Query: 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALL---WNKNERELLS 376
AI + P N ATG D + ++ L + + +C + ++K+ R LL+
Sbjct: 231 AICFFP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
G+ +W + L+GH +RV + + DG VA+ + D L+ WN
Sbjct: 288 --GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 15/183 (8%)
Query: 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
R++ T RGH ++ + W + L S D L IWD + T +H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD------SYTTNKVHAIPL 95
Query: 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNK 369
+S V A+ P N +A GG I T G S + TG C +
Sbjct: 96 RSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
N+ +++S G T LW + + +GHT V+ ++ +PD S A D + +
Sbjct: 155 NQ--IVTSSGDTT--CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 430 WNV 432
W+V
Sbjct: 211 WDV 213
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 35/241 (14%)
Query: 216 RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL 273
R RTLRG H +++ ++ W ++ +L + DG +I D + V + V
Sbjct: 46 RTRRTLRG-HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 103
Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF-QSNLLA 332
++ SG +A GG DN+ I++ N L HT + C F N +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVS--RELAGHTGYLSC---CRFLDDNQIV 158
Query: 333 TGGGGGDRCIKFWNT-----------HTGACLNSVDTGSQVCALLWNKNERELLSSHGFT 381
T G D W+ HTG V +L + R +S G
Sbjct: 159 TSSG--DTTCALWDIETGQQTTTFTGHTG----------DVMSLSLAPDTRLFVS--GAC 204
Query: 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441
LW + +GH S + + P+G A+ + D T R +++ ++++
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 442 S 442
S
Sbjct: 265 S 265
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 29/295 (9%)
Query: 149 WGSSN--VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNN- 204
WG+ + +L+ + + +WD+ TT+++ + + V + +AP G ++A G L+N
Sbjct: 63 WGTDSRLLLSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 205 CQV-QLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE 261
C + L N ++ GH + + +N I+T+ G D D+
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETG-QQTT 178
Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR--LEEHTSAVK 319
T+ GH +V L + + SG D +WD V + + R H S +
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD--------VREGMCRQTFTGHESDIN 230
Query: 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALL---WNKNERELLS 376
AI + P N ATG D + ++ L + + +C + ++K+ R LL+
Sbjct: 231 AICFFP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
G+ +W + L+GH +RV + + DG VA+ + D L+ WN
Sbjct: 288 --GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 15/183 (8%)
Query: 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
R++ T RGH ++ + W + L S D L IWD + T +H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD------SYTTNKVHAIPL 95
Query: 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNK 369
+S V A+ P N +A GG I T G S + TG C +
Sbjct: 96 RSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
N+ +++S G T LW + + +GHT V+ ++ +PD S A D + +
Sbjct: 155 NQ--IVTSSGDTT--CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 430 WNV 432
W+V
Sbjct: 211 WDV 213
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 35/241 (14%)
Query: 216 RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL 273
R RTLRG H +++ ++ W ++ +L + DG +I D + V + V
Sbjct: 46 RTRRTLRG-HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 103
Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF-QSNLLA 332
++ SG +A GG DN+ I++ N L HT + C F N +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVS--RELAGHTGYLSC---CRFLDDNQIV 158
Query: 333 TGGGGGDRCIKFWNT-----------HTGACLNSVDTGSQVCALLWNKNERELLSSHGFT 381
T G D W+ HTG V +L + R +S G
Sbjct: 159 TSSG--DTTCALWDIETGQQTTTFTGHTG----------DVMSLSLAPDTRLFVS--GAC 204
Query: 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441
LW + +GH S + + P+G A+ + D T R +++ ++++
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 442 S 442
S
Sbjct: 265 S 265
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 123/290 (42%), Gaps = 51/290 (17%)
Query: 184 GPVTSVNWAPDGRHI-AIGLNNCQVQLWDST-----------ANRQLRTLRGGHRSRVGS 231
G V + P HI A + V ++D T N LR LRG + G
Sbjct: 127 GEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLR-LRGHQKEGYG- 184
Query: 232 LAWNNHI---LTTGGMDGLIINNDVRV---RDHIVET---YRGHNQEVCGLKWSASGQQL 282
L+WN+++ L + D + D+ IV+ + GH+ V + W + L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 283 -ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341
S +D L IWD SN+ ++ H ++ HT+ V +++ P+ +LAT G D+
Sbjct: 245 FGSVADDQKLMIWD---TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT--GSADKT 299
Query: 342 IKFWNTHTGAC-LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKY--------- 390
+ W+ L++ ++ ++ + W+ + +L+S G T +L +W
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG-TDRRLNVWDLSKIGEEQSA 358
Query: 391 -------PSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNV 432
P ++ + GHT+++ + +P + + S + D ++ W +
Sbjct: 359 EDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 224 GHRSRVGSLAWNNH--ILTTGGMDGLII------NNDVRVRDHIVETYRGHNQEVCGLKW 275
H+ + S+AW H +L G D + + D ++ GH EV G+ W
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335
S G LA+ D + IW+ S + + L+EH+ VK + W P ++ LLA+
Sbjct: 116 SNDGYYLATCSRDKSVWIWETD--ESGEEYECISVLQEHSQDVKHVIWHPSEA-LLAS-- 170
Query: 336 GGGDRCIKFWNTH 348
D ++ W +
Sbjct: 171 SSYDDTVRIWKDY 183
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 50/215 (23%)
Query: 225 HRSRVGSLAWNNHILTTGGMDGLII-----NNDVRVRDHIVETYRGHNQEVCGLKWSASG 279
++ ++ S ++ IL TG D I +D + D + ET H + + + W
Sbjct: 13 YKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDET--AHKKAIRSVAWRPHT 70
Query: 280 QQLASGGNDNLLHIWDRSMASSNSV-TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG 338
LA+G D+ + IW + ++ + L +E H + VK +AW LAT
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSR-- 127
Query: 339 DRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE 398
D+ + W T E E +S
Sbjct: 128 DKSVWIWETDESG------------------EEYECISV--------------------- 148
Query: 399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
L H+ V + P +AS++ D+T+R W +
Sbjct: 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 97/254 (38%), Gaps = 21/254 (8%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS-RVGSLAWNNHILTTGGM 244
V +++ P + L + +V+LW+ ++R+++ R G + + G
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 245 DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304
D I + + +V+ + H + + + + SG +D + +W N
Sbjct: 76 DFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-------NWE 127
Query: 305 TQWL--HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ- 361
W E H V +A+ P + A+G DR +K W+ ++ TG +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL--DRTVKVWSLGQSTPNFTLTTGQER 185
Query: 362 ----VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
V + +S T + +W Y + +A L GH S V F P
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLT---IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 418 VASAAADETLRFWN 431
+ S + D TL+ WN
Sbjct: 243 IISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 97/254 (38%), Gaps = 21/254 (8%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS-RVGSLAWNNHILTTGGM 244
V +++ P + L + +V+LW+ ++R+++ R G + + G
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 245 DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304
D I + + +V+ + H + + + + SG +D + +W N
Sbjct: 76 DFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-------NWE 127
Query: 305 TQWL--HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ- 361
W E H V +A+ P + A+G DR +K W+ ++ TG +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL--DRTVKVWSLGQSTPNFTLTTGQER 185
Query: 362 ----VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
V + +S T + +W Y + +A L GH S V F P
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLT---IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 418 VASAAADETLRFWN 431
+ S + D TL+ WN
Sbjct: 243 IISGSEDGTLKIWN 256
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 121/289 (41%), Gaps = 53/289 (18%)
Query: 184 GPVTSVNWAPDGRHI-AIGLNNCQVQLWDST-----------ANRQLRTLRGGHRSRVGS 231
G V + P HI A + V ++D T N LR LRG + G
Sbjct: 127 GEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLR-LRGHQKEGYG- 184
Query: 232 LAWNNHI---LTTGGMDGLIINNDVRV---RDHIVET---YRGHNQEVCGLKWSASGQQL 282
L+WN+++ L + D + D+ IV+ + GH+ V + W + L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 283 -ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341
S +D L IWD SN+ ++ H ++ HT+ V +++ P+ +LAT G D+
Sbjct: 245 FGSVADDQKLXIWD---TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT--GSADKT 299
Query: 342 IKFWNTHTGAC-LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE- 398
+ W+ L++ ++ ++ + W+ + +L+S G T +L +W + K+ E
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG-TDRRLNVW---DLSKIGEE 355
Query: 399 ----------------LSGHTSRVLFMAQSP-DGCTVASAAADETLRFW 430
GHT+++ + +P + + S + D + W
Sbjct: 356 QSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 20/207 (9%)
Query: 179 VDDENGPVTSVNWAPDGRH-IAIGLNNCQVQLWDSTANRQLRTLRG------GHRSRVGS 231
V PV + W P + IA G +C V +W+ + LR GH RVG
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 232 LAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRG-HNQEVCGLKWSASGQQLASGGN 287
+AW+ ++L + G D +I+ DV ++ H + + WS G + +
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG-GGDRCIKFWN 346
D + + + +V R E T V A+ + +L TG +R + W+
Sbjct: 197 DKRVRVIE---PRKGTVVAEKDRPHEGTRPVHAVFVS--EGKILTTGFSRMSERQVALWD 251
Query: 347 T---HTGACLNSVDTGSQVCALLWNKN 370
T L +DT S V ++ +
Sbjct: 252 TKHLEEPLSLQELDTSSGVLLPFFDPD 278
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 257 DHIVETYRGHNQEVCGLKWSASGQQ-LASGGNDNLLHIWDRSMAS-SNSVTQWLHRLEEH 314
D V GH V + W +ASG D + +W+ + + + LE H
Sbjct: 71 DKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130
Query: 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353
T V +AW P N+L + G D I W+ TGA +
Sbjct: 131 TKRVGIVAWHPTAQNVLLS--AGXDNVILVWDVGTGAAV 167
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 17/178 (9%)
Query: 283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCI 342
ASGG L+ + + V + + + HT+ V IAW P N++A+ G D +
Sbjct: 53 ASGGGAFLV----LPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIAS--GSEDCTV 106
Query: 343 KFWNTHTGACLNSVDT--------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV 394
W G + + +V + W+ + +L S G N + +W +
Sbjct: 107 MVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG-XDNVILVWDVGTGA 165
Query: 395 KMAELSG--HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREP 450
+ L H + + S DG + ++ D+ +R V K P P
Sbjct: 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP 223
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 20/203 (9%)
Query: 183 NGPVTSVNWAPDGRH-IAIGLNNCQVQLWDSTANRQLRTLRG------GHRSRVGSLAWN 235
PV + W P + IA G +C V +W+ + LR GH RVG +AW+
Sbjct: 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH 140
Query: 236 ---NHILTTGGMDGLIINNDVRVRDHIVETYRG-HNQEVCGLKWSASGQQLASGGNDNLL 291
++L + G D +I+ DV ++ H + + WS G + + D +
Sbjct: 141 PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRV 200
Query: 292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG-GGDRCIKFWNT--- 347
+ + +V R E T V A+ + +L TG +R + W+T
Sbjct: 201 RVIE---PRKGTVVAEKDRPHEGTRPVHAVFVS--EGKILTTGFSRMSERQVALWDTKHL 255
Query: 348 HTGACLNSVDTGSQVCALLWNKN 370
L +DT S V ++ +
Sbjct: 256 EEPLSLQELDTSSGVLLPFFDPD 278
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 257 DHIVETYRGHNQEVCGLKWSASGQQ-LASGGNDNLLHIWDRSMAS-SNSVTQWLHRLEEH 314
D V GH V + W +ASG D + +W+ + + + LE H
Sbjct: 71 DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130
Query: 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353
T V +AW P N+L + G D I W+ TGA +
Sbjct: 131 TKRVGIVAWHPTAQNVLLS--AGCDNVILVWDVGTGAAV 167
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 17/178 (9%)
Query: 283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCI 342
ASGG L+ + + V + + + HT+ V IAWCP N++A+ G D +
Sbjct: 53 ASGGGAFLV----LPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIAS--GSEDCTV 106
Query: 343 KFWNTHTGACLNSVDT--------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV 394
W G + + +V + W+ + +L S G N + +W +
Sbjct: 107 MVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG-CDNVILVWDVGTGA 165
Query: 395 KMAELSG--HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREP 450
+ L H + + S DG + ++ D+ +R V K P P
Sbjct: 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP 223
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 273 LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332
L WS + + +A ++ L ++ + A N+ + R H+S+VK + + Q N+LA
Sbjct: 73 LDWSHNNKIIAGALDNGSLELYSTNEA--NNAINSMARFSNHSSSVKTVKFNAKQDNVLA 130
Query: 333 TGGGGGD-------RCIKFWNTHT----GACLNSVDTGSQVCALLWNKNERELLSSHGFT 381
+GG G+ +C + + +T G ++SVD +V +L WN++ + +S G +
Sbjct: 131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD---EVISLAWNQSLAHVFASAG-S 186
Query: 382 QNQLTLWKYPSMVKMAELS 400
N ++W + ++ LS
Sbjct: 187 SNFASIWDLKAKKEVIHLS 205
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 203 NNCQVQLWD-STANRQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLII 249
N+ + +WD AN L+TL GH+ + SL W + H+L + G D ++
Sbjct: 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL 288
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 44/161 (27%)
Query: 178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--N 235
++D + S+ ++PDG+++A G + + ++D + L TL G H + SL + +
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPD 217
Query: 236 NHILTTGGMDGLIINNDVR-------VRDH------------------------------ 258
+ +L T DG I DV+ + H
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
Query: 259 ----IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
V T+ H +V G+K++ +G ++ S G+D +HI+D
Sbjct: 278 GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 204 NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGL--IINNDVRVRDHI 259
+ ++LWD +Q++++ G +LA+ ++ L TG G I + +++
Sbjct: 101 DAHIRLWDLENGKQIKSIDAG-PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159
Query: 260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK 319
++T RG + + + +S G+ LASG D +++I+D + + LH LE H ++
Sbjct: 160 LDT-RG--KFILSIAYSPDGKYLASGAIDGIINIFDIATG------KLLHTLEGHAMPIR 210
Query: 320 AIAWCPFQSNLLATGGGGG 338
++ + P S LL T G
Sbjct: 211 SLTFSP-DSQLLVTASDDG 228
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 97/254 (38%), Gaps = 21/254 (8%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS-RVGSLAWNNHILTTGGM 244
V +++ P + L + +V+LW+ ++R+++ R G + + G
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 245 DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304
D I + + +V+ + H + + + + SG +D + +W N
Sbjct: 76 DFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-------NWE 127
Query: 305 TQWL--HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ- 361
W E H V +A+ P + A+G DR +K W+ ++ TG +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL--DRTVKVWSLGQSTPNFTLTTGQER 185
Query: 362 ----VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
V + +S T + +W Y + +A L GH S V F P
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLT---IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 418 VASAAADETLRFWN 431
+ S + D TL+ WN
Sbjct: 243 IISGSEDGTLKIWN 256
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
T+ LWD GTT + V SV ++PD R I +++LW+ + +
Sbjct: 99 TLRLWDLRTGTTYKRFV--GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 222 RGGHRSRVGSLAWNNHILTTG-------------GMDG--LIINNDVRVRDHIVETYRGH 266
+ S S + I+ + G DG + N + ++R T++ H
Sbjct: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR----YTFKAH 212
Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIWD 295
V L S +G+ +A+GG D L IWD
Sbjct: 213 ESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 21/180 (11%)
Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
GHN V L S S D L +WD ++ R H S V ++A+
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT------YKRFVGHQSEVYSVAFS 127
Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--------TGSQVCALLWNKNERELLS 376
P +L+ G +R IK WN +S + + + ++ + N+ + +
Sbjct: 128 PDNRQILS---AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFA 184
Query: 377 SHGFT---QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
+ + +L +W ++ H S V ++ SP+G +A+ D+ L W++
Sbjct: 185 PYFASVGWDGRLKVWNTNFQIRYT-FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434
L LW + GH S V +A SPD + SA A+ ++ WN+ G
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDS-TANRQLRTLRGGHRSRVGSLAWNNHI--LTTG 242
V ++ +P+G++IA G + ++ +WD R G S + +A+N + + G
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAG--STINQIAFNPKLQWVAVG 273
Query: 243 GMDGLIINNDVRVRDHIV-----------ETYRGHNQEVCGLKWSASGQQLASGGNDNLL 291
G+ I N + V E +G N + L W+A G++L +G D ++
Sbjct: 274 TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI 333
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
L+GH V +A S + C S++ D+TLR W++
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 97/254 (38%), Gaps = 21/254 (8%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS-RVGSLAWNNHILTTGGM 244
V +++ P + L + +V++W+ ++R+++ R G + + G
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 245 DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304
D I + + +V+ + H + + + + SG +D + +W N
Sbjct: 76 DFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-------NWE 127
Query: 305 TQWL--HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ- 361
W E H V +A+ P + A+G DR +K W+ ++ TG +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL--DRTVKVWSLGQSTPNFTLTTGQER 185
Query: 362 ----VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
V + +S T + +W Y + +A L GH S V F P
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLT---IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 418 VASAAADETLRFWN 431
+ S + D TL+ WN
Sbjct: 243 IISGSEDGTLKIWN 256
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 25/161 (15%)
Query: 158 ALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRH--IAIGLNNCQVQLWDSTA 214
+ T+ +WD + T+++ ++ V S + +P +H +A+G +VQL D +
Sbjct: 119 SFDKTLKVWDTNTLQTADVFNFEE---TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175
Query: 215 NRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVR--------------VRD 257
L+G HR + +++W+ ++IL T D + DVR +
Sbjct: 176 GSCSHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 258 HIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297
VE+ HN +V GL +++ G L + G DN + +W+ S
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 251 NDVR---VRDH---IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304
NDVR V+D I + + H V + WS G ++ + D +WD SSN
Sbjct: 64 NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD---LSSNQA 120
Query: 305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349
Q + +H + VK I W N G D+ +KFW+T +
Sbjct: 121 IQ----IAQHDAPVKTIHWIK-APNYSCVMTGSWDKTLKFWDTRS 160
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
++A + + V W+ D + GPV V W+ DG + + ++WD +
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116
Query: 214 ANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDGLIINNDVR 254
+N+ ++ + H + V ++ W N + TG D + D R
Sbjct: 117 SNQAIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 29/190 (15%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLW-DSTANRQL 218
+V ++D +G + + GPV V WA G +A + +V +W + +
Sbjct: 36 SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK 95
Query: 219 RTLRGGHRSRVGSLAWNNH----ILTTGGMDGLI--INNDVRVRDHIVETYRGHNQEVCG 272
GH S V S+ W H IL G DG I + + + + H
Sbjct: 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155
Query: 273 LKWSA-----------SGQQ------LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT 315
+ W+ SGQ+ ASGG DNL+ +W Q +LE H+
Sbjct: 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQ---KLEAHS 212
Query: 316 SAVKAIAWCP 325
V+ +AW P
Sbjct: 213 DWVRDVAWAP 222
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 24/178 (13%)
Query: 266 HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
H+ V L + G Q SGG D + +WD S + L H+S V +A CP
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV------LKSYNAHSSEVNCVAACP 191
Query: 326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVD---TGSQVCALLWNKNERELLSSHGFTQ 382
+ + + G G I W+T +D + + ++ W+ + + + T
Sbjct: 192 GKDTIFLSCGEDGR--ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249
Query: 383 N-QLTLWKYP-----SMVKMAELSG-----HTSRVLFMAQSPDGCTVASAAADETLRF 429
N L K P S V ++G H+S F+A + CTVA AD + F
Sbjct: 250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSP--FLASISEDCTVAVLDADFSEVF 305
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILT 240
VT + W+ DG I G+ N +++LW+ T L + HR+ + S+ WN HI++
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWNKTG--ALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 30/180 (16%)
Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326
NQ C L WS G + +G + L +W+++ A L+ L H + + ++ W
Sbjct: 109 NQVTC-LAWSHDGNSIVTGVENGELRLWNKTGA-------LLNVLNFHRAPIVSVKWNKD 160
Query: 327 QSNLLATGGGGGDRCIKFWNTHTGACL----------------NSVDTGSQVCALLWNKN 370
+++++ + WN +G + N GS + W +
Sbjct: 161 GTHIISM---DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217
Query: 371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
++ ++ + + +++ +L GH + + + + SA+ D TLR W
Sbjct: 218 DKFVIPG---PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 59/153 (38%), Gaps = 20/153 (13%)
Query: 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320
E + H E+ LK+ SG+ L S D L IW SN T HR + V
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRTLIGHR-----ATVTD 183
Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD------TGSQVCALLWNKNEREL 374
IA N+L+ G I+ W TG +++ + G AL +R+L
Sbjct: 184 IAIIDRGRNVLSASLDG---TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVG-TDRQL 239
Query: 375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL 407
+N L Y V ++GH S V+
Sbjct: 240 HEISTSKKNNLEFGTYGKYV----IAGHVSGVI 268
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 59/153 (38%), Gaps = 20/153 (13%)
Query: 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320
E + H E+ LK+ SG+ L S D L IW SN T HR + V
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRTLIGHR-----ATVTD 186
Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD------TGSQVCALLWNKNEREL 374
IA N+L+ G I+ W TG +++ + G AL +R+L
Sbjct: 187 IAIIDRGRNVLSASLDG---TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVG-TDRQL 242
Query: 375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL 407
+N L Y V ++GH S V+
Sbjct: 243 HEISTSKKNNLEFGTYGKYV----IAGHVSGVI 271
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 18/171 (10%)
Query: 163 VYLWDASD-GTTSELVTVD--DENGPVTSVNWAPDGRHIAIGLNNCQVQLWD---STANR 216
V +WD S G S + +D + + + S PDG + +G + +WD T
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 217 QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWS 276
+ +++ ++ + + DG I D+ +V ++GH + S
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDIS 192
Query: 277 ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWCP 325
G +L +GG DN + WD +L++H TS + ++ +CP
Sbjct: 193 NDGTKLWTGGLDNTVRSWDLREG---------RQLQQHDFTSQIFSLGYCP 234
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 201 GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLA------WNNHILTTGGMDGLIINNDVR 254
GL+N V+ WD RQL+ + S++ SL W + + ++ L +N +
Sbjct: 202 GLDN-TVRSWDLREGRQLQ--QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258
Query: 255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS 301
+ H+ H V LK++ G+ S G DNLL+ W +S
Sbjct: 259 YQLHL------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 15/208 (7%)
Query: 233 AWNNHILTTGGMDGLIINNDVRVRDHIVETYR-----GHNQEVCGLKWSASGQQLASGGN 287
A++ H+ G M + D + I R H + VC + S + + +GG
Sbjct: 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK 71
Query: 288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN- 346
+ +WD S + S L L + +++ P L+ GG + W+
Sbjct: 72 -GCVKVWDISHPGNKSPVSQLDCLNRD-NYIRSCKLLPDGCTLIV---GGEASTLSIWDL 126
Query: 347 -THTGACLNSVDTGSQVC-ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS 404
T + + + C AL + + + S + + +W + + + GHT
Sbjct: 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSC--CSDGNIAVWDLHNQTLVRQFQGHTD 184
Query: 405 RVLFMAQSPDGCTVASAAADETLRFWNV 432
+ S DG + + D T+R W++
Sbjct: 185 GASCIDISNDGTKLWTGGLDNTVRSWDL 212
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 18/160 (11%)
Query: 151 SSNVLAIAL--GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQ 208
S N +A+ L G+T+ ++ SD S + P + ++ +P +IA G ++
Sbjct: 455 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP-SYISISPSETYIAAGDVXGKIL 513
Query: 209 LWDSTANRQLRTLRGGHR-SRVGSLAWN------------NHILTTGGMDGLIINNDVRV 255
L+D +R+++T R R S++ +++W ++ TG +D I V+
Sbjct: 514 LYD-LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572
Query: 256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
I++ H V L W L S G D + W+
Sbjct: 573 PXKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 611
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 18/160 (11%)
Query: 151 SSNVLAIAL--GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQ 208
S N +A+ L G+T+ ++ SD S + P + ++ +P +IA G ++
Sbjct: 455 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP-SYISISPSETYIAAGDVMGKIL 513
Query: 209 LWDSTANRQLRTLRGGHR-SRVGSLAWN------------NHILTTGGMDGLIINNDVRV 255
L+D +R+++T R R S++ +++W ++ TG +D I V+
Sbjct: 514 LYD-LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572
Query: 256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
I++ H V L W L S G D + W+
Sbjct: 573 PMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 611
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 107/254 (42%), Gaps = 45/254 (17%)
Query: 184 GPVTSVNWAPDGRHIAI---GLNNCQVQL-WDSTANRQLRTLRGGHRSRVGSLAWNNHIL 239
GP++ ++W +GR + + G +N V + WDS L + GH R+ + H+
Sbjct: 117 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVS-GHSQRINAC----HLK 169
Query: 240 TTGGMDGLIINNDVRVRDH------IVETYRGHNQE---VCGLKWSA-SGQQLASGGNDN 289
+ M + + +D V + + R H+++ V +++S SG+ + + G+D
Sbjct: 170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR 229
Query: 290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVK----AIAWCPFQSNLLATGGGGGDRCIKFW 345
+ +D ++L +E+ V+ A++W S AT G D I+ W
Sbjct: 230 KISCFDGKSG------EFLKYIEDDQEPVQGGIFALSW--LDSQKFAT--VGADATIRVW 279
Query: 346 NTHTGAC-----LNSVDTGSQVCALLWNKNEREL-LSSHGFTQNQLTLWKYPSMVKMAEL 399
+ T C L+ G+Q ++ N R + LS G L ++ + +
Sbjct: 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG----TLNFYELGHDEVLKTI 335
Query: 400 SGHTSRVLFMAQSP 413
SGH + + +P
Sbjct: 336 SGHNKGITALTVNP 349
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD---STANRQLR 219
V++++ S ++ + + NG VT V+WAPD I + +W T L
Sbjct: 32 VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV 91
Query: 220 TLRGGHRSRVGSLAWNNHILTTGGMDGLII------NNDVRVRDHIVETYRGHNQEVCGL 273
LR +R A N G +I ND V HI + R V L
Sbjct: 92 ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR---STVLSL 148
Query: 274 KWSASGQQLASGGND 288
W + LA+G D
Sbjct: 149 DWHPNSVLLAAGSCD 163
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAW---NNHIL 239
P++ W D IAI NN +V +++ + N+ Q+ L+ H +V + W +N I+
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIV 68
Query: 240 TTG 242
T G
Sbjct: 69 TCG 71
>pdb|2FTP|A Chain A, Crystal Structure Of Hydroxymethylglutaryl-Coa Lyase From
Pseudomonas Aeruginosa
Length = 302
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN---THTGACLNS 355
A +N L + S+V + CP+ ATG + + N HTG +++
Sbjct: 217 ALANIYASLLEGIAVFDSSVAGLGGCPYAKG--ATGNVASEDVLYLLNGLEIHTGVDMHA 274
Query: 356 -VDTGSQVCALLWNKN 370
VD G ++CA+L N
Sbjct: 275 LVDAGQRICAVLGKSN 290
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-----GLNNCQVQLWDSTANR 216
TV ++ + G T L T + + +T+++W+PD + + N C+V +D+ R
Sbjct: 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR 295
Query: 217 QLRTL 221
+RTL
Sbjct: 296 FVRTL 300
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-----GLNNCQVQLWDSTANR 216
TV ++ + G T L T + + +T+++W+PD + + N C+V +D+ R
Sbjct: 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR 295
Query: 217 QLRTL 221
+RTL
Sbjct: 296 FVRTL 300
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-----GLNNCQVQLWDSTANR 216
TV ++ + G T L T + + +T+++W+PD + + N C+V +D+ R
Sbjct: 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR 295
Query: 217 QLRTL 221
+RTL
Sbjct: 296 FVRTL 300
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD---STANRQLR 219
V++++ S ++ + + NG VT ++WAPD I + +W T L
Sbjct: 32 VHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV 91
Query: 220 TLRGGHRSRVGSLAWNNHILTTGGMDGLII------NNDVRVRDHIVETYRGHNQEVCGL 273
LR +R A N G +I ND V HI + R V L
Sbjct: 92 ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR---STVLSL 148
Query: 274 KWSASGQQLASGGND 288
W + LA+G D
Sbjct: 149 DWHPNSVLLAAGSCD 163
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAW---NNHIL 239
P++ W D IAI NN +V +++ + N+ Q+ L+ H +V + W +N I+
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGIDWAPDSNRIV 68
Query: 240 TTG 242
T G
Sbjct: 69 TCG 71
>pdb|2ZTJ|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Alpha-Ketoglutarate
pdb|2ZTK|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Homocitrate
pdb|2ZYF|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Magnesuim Ion And
Alpha-Ketoglutarate
Length = 382
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 14 LQEQFLQRKNSKE---NLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAY 70
LQ ++++RK E LDR + ++ + +Y+ E + + + EAY
Sbjct: 244 LQPEYVRRKYKLEMLPELDRMVARMVGVEIPFNNYITGETAFSHKAGMHLKAIYINPEAY 303
Query: 71 RKQLAEVFNMNRTRILA 87
EVF + R I+A
Sbjct: 304 EPYPPEVFGVKRKLIIA 320
>pdb|3A9I|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Lys
Length = 376
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 14 LQEQFLQRKNSKE---NLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAY 70
LQ ++++RK E LDR + ++ + +Y+ E + + + EAY
Sbjct: 244 LQPEYVRRKYKLEMLPELDRMVARMVGVEIPFNNYITGETAFSHKAGMHLKAIYINPEAY 303
Query: 71 RKQLAEVFNMNRTRILA 87
EVF + R I+A
Sbjct: 304 EPYPPEVFGVKRKLIIA 320
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 33/166 (19%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANRQLR- 219
V +W +G S++ + V SV WAP G + + ++ +V + + N
Sbjct: 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138
Query: 220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279
+ H V S +W + G HN G K S
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDG---------------------EHN----GTKES--- 170
Query: 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
++ +GG DNL+ IW + + V + LE H+ V+ +AW P
Sbjct: 171 RKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSP 214
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 180 DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
DD NG V SV+W G ++ ++ +V+LW +T + + + +
Sbjct: 301 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 342
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294
++ + HN EV + W+ +G L+S G+D + +W
Sbjct: 296 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 180 DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
DD NG V SV+W G ++ ++ +V+LW +T + + + +
Sbjct: 303 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294
++ + HN EV + W+ +G L+S G+D + +W
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 33/166 (19%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANRQLR- 219
V +W +G S++ + V SV WAP G + + ++ +V + + N
Sbjct: 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 140
Query: 220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279
+ H V S +W + G HN +
Sbjct: 141 IIIDAHAIGVNSASWAPATIEEDGE---------------------HNG-------TKES 172
Query: 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
++ +GG DNL+ IW + + V + LE H+ V+ +AW P
Sbjct: 173 RKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSP 216
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294
++ + HN EV + W+ +G L+S G+D + +W
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 180 DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219
DD NG V SV+W G ++ ++ +V+LW +T + + +
Sbjct: 303 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 33/166 (19%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANRQLR- 219
V +W +G S++ + V SV WAP G + + ++ +V + + N
Sbjct: 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP 138
Query: 220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279
+ H V S +W + G HN G K
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGE---------------------HN----GTK---ES 170
Query: 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
++ +GG DNL+ IW + + V + LE H+ V+ +AW P
Sbjct: 171 RKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSP 214
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC 416
D+ S C L+ E + S L++ + S + E + H+S V+ ++ + G
Sbjct: 263 DSNSFGCITLYETEFGERIGS-------LSVPTHSSQASLGEFA-HSSWVMSLSFNDSGE 314
Query: 417 TVASAAADETLRFWNV 432
T+ SA D LRFW+V
Sbjct: 315 TLCSAGWDGKLRFWDV 330
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 33/166 (19%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANRQLR- 219
V +W +G S++ + V SV WAP G + + ++ +V + + N
Sbjct: 79 VXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSP 138
Query: 220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279
+ H V S +W + G HN G K
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGE---------------------HN----GTK---ES 170
Query: 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
++ +GG DNL+ IW + + V + LE H+ V+ +AW P
Sbjct: 171 RKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSP 214
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC 416
D+ S C L+ E + S L++ + S + E + H+S V+ ++ + G
Sbjct: 253 DSNSFGCITLYETEFGERIGS-------LSVPTHSSQASLGEFA-HSSWVMSLSFNDSGE 304
Query: 417 TVASAAADETLRFWNV 432
T+ SA D LRFW+V
Sbjct: 305 TLCSAGWDGKLRFWDV 320
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWD 295
H++ TGG DG++ DVR V + H E+ + + S + L + D L WD
Sbjct: 250 HVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Query: 296 RS 297
S
Sbjct: 310 AS 311
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
GH + + +K++ G L S D+ +W S N + L L+ HT + +I
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVW----YSLNG--ERLGTLDGHTGTIWSIDVD 83
Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGACL 353
F + G D IK W+ G C+
Sbjct: 84 CFTKYCVT---GSADYSIKLWDVSNGQCV 109
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 33/166 (19%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANRQLR- 219
V +W +G S++ + V SV WAP G + + ++ +V + + N
Sbjct: 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138
Query: 220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279
+ H V S +W + G HN +
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGE---------------------HNG-------TKES 170
Query: 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
++ +GG DNL+ IW + + V + LE H+ V+ +AW P
Sbjct: 171 RKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSP 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,420,947
Number of Sequences: 62578
Number of extensions: 541621
Number of successful extensions: 2225
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 423
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)