Query 012679
Match_columns 458
No_of_seqs 975 out of 2767
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:10:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0305 Anaphase promoting com 100.0 1.1E-66 2.3E-71 495.1 39.3 422 23-458 41-484 (484)
2 KOG0271 Notchless-like WD40 re 100.0 8.4E-44 1.8E-48 316.9 25.6 286 143-442 117-448 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 8.1E-44 1.8E-48 320.9 22.9 282 135-431 169-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 5.3E-42 1.2E-46 305.4 26.6 279 140-431 156-479 (480)
5 KOG0286 G-protein beta subunit 100.0 8.1E-41 1.7E-45 288.4 32.2 274 143-431 57-343 (343)
6 KOG0279 G protein beta subunit 100.0 2.8E-38 6E-43 271.2 30.5 270 151-433 28-313 (315)
7 KOG0272 U4/U6 small nuclear ri 100.0 5.6E-39 1.2E-43 289.7 21.3 252 181-445 173-430 (459)
8 KOG0273 Beta-transducin family 100.0 1.1E-36 2.3E-41 278.3 32.3 281 137-433 231-523 (524)
9 KOG0315 G-protein beta subunit 100.0 1.6E-36 3.6E-41 256.2 29.7 278 152-445 11-300 (311)
10 KOG0315 G-protein beta subunit 100.0 6.7E-36 1.4E-40 252.5 28.2 291 103-412 14-309 (311)
11 KOG0295 WD40 repeat-containing 100.0 1.6E-36 3.4E-41 269.2 25.5 275 144-432 111-405 (406)
12 KOG0284 Polyadenylation factor 100.0 1.5E-37 3.2E-42 279.3 17.5 290 130-433 85-380 (464)
13 KOG0281 Beta-TrCP (transducin 100.0 6.2E-37 1.3E-41 270.0 15.5 278 143-444 199-488 (499)
14 KOG0296 Angio-associated migra 100.0 1.8E-34 3.9E-39 256.2 29.6 284 141-433 66-398 (399)
15 KOG0273 Beta-transducin family 100.0 9.3E-35 2E-39 265.7 28.1 284 143-441 180-490 (524)
16 KOG0291 WD40-repeat-containing 100.0 6.4E-34 1.4E-38 273.4 33.4 285 141-440 307-619 (893)
17 KOG0285 Pleiotropic regulator 100.0 1.4E-34 3.1E-39 256.0 26.6 294 120-434 134-440 (460)
18 cd00200 WD40 WD40 domain, foun 100.0 3E-33 6.5E-38 260.3 36.5 275 142-431 10-289 (289)
19 KOG0263 Transcription initiati 100.0 9.9E-35 2.1E-39 281.4 25.7 248 178-438 373-654 (707)
20 KOG0286 G-protein beta subunit 100.0 2.5E-33 5.4E-38 242.2 30.8 255 176-442 48-312 (343)
21 KOG0265 U5 snRNP-specific prot 100.0 1.1E-33 2.5E-38 245.2 27.6 274 143-431 49-336 (338)
22 KOG0284 Polyadenylation factor 100.0 4.5E-35 9.8E-40 263.3 16.4 246 183-442 96-346 (464)
23 KOG0645 WD40 repeat protein [G 100.0 2.1E-32 4.6E-37 234.1 31.2 276 144-433 17-311 (312)
24 KOG0318 WD40 repeat stress pro 100.0 4.8E-32 1E-36 251.0 35.5 297 142-446 191-573 (603)
25 KOG0279 G protein beta subunit 100.0 1.1E-32 2.4E-37 236.8 28.7 254 175-443 7-272 (315)
26 KOG0266 WD40 repeat-containing 100.0 8.4E-33 1.8E-37 273.9 31.4 281 142-433 160-454 (456)
27 KOG0295 WD40 repeat-containing 100.0 6E-34 1.3E-38 252.8 20.1 255 176-442 101-373 (406)
28 KOG0291 WD40-repeat-containing 100.0 3.1E-32 6.6E-37 261.9 32.8 277 151-439 201-514 (893)
29 KOG0278 Serine/threonine kinas 100.0 1.5E-33 3.4E-38 238.3 17.8 269 153-438 31-302 (334)
30 KOG0285 Pleiotropic regulator 100.0 8.7E-33 1.9E-37 244.7 22.6 250 176-440 144-396 (460)
31 KOG0319 WD40-repeat-containing 100.0 2E-32 4.3E-37 262.9 26.0 267 152-433 337-619 (775)
32 KOG0282 mRNA splicing factor [ 100.0 2.3E-33 5.1E-38 257.5 18.4 274 143-431 216-503 (503)
33 KOG0263 Transcription initiati 100.0 5E-32 1.1E-36 262.6 27.0 237 143-392 380-650 (707)
34 KOG0266 WD40 repeat-containing 100.0 1.8E-31 4E-36 264.4 30.8 251 182-444 158-420 (456)
35 KOG0316 Conserved WD40 repeat- 100.0 6.3E-32 1.4E-36 226.7 22.7 254 175-442 9-266 (307)
36 KOG0293 WD40 repeat-containing 100.0 6.6E-32 1.4E-36 243.2 23.5 299 121-435 208-515 (519)
37 KOG0276 Vesicle coat complex C 100.0 1.8E-31 3.9E-36 251.7 27.4 277 144-434 16-299 (794)
38 KOG0274 Cdc4 and related F-box 100.0 3.1E-31 6.6E-36 262.3 30.2 281 140-441 207-490 (537)
39 KOG0281 Beta-TrCP (transducin 100.0 2.9E-33 6.4E-38 246.8 13.9 237 182-438 196-433 (499)
40 PLN00181 protein SPA1-RELATED; 100.0 4.7E-30 1E-34 272.5 39.7 278 140-432 482-792 (793)
41 KOG0277 Peroxisomal targeting 100.0 3.5E-31 7.5E-36 224.7 22.6 262 159-432 36-308 (311)
42 KOG0316 Conserved WD40 repeat- 100.0 1.8E-30 3.8E-35 218.1 25.9 271 143-432 19-298 (307)
43 KOG0645 WD40 repeat protein [G 100.0 1.1E-29 2.4E-34 217.6 30.7 247 174-434 5-262 (312)
44 cd00200 WD40 WD40 domain, foun 100.0 6.8E-30 1.5E-34 237.7 32.2 251 177-440 3-256 (289)
45 KOG0276 Vesicle coat complex C 100.0 4.1E-31 8.8E-36 249.3 23.8 248 179-437 9-261 (794)
46 KOG0313 Microtubule binding pr 100.0 2.3E-30 5.1E-35 231.2 27.0 277 141-433 105-418 (423)
47 KOG0318 WD40 repeat stress pro 100.0 1.8E-29 3.9E-34 234.0 33.5 280 142-438 60-355 (603)
48 KOG0306 WD40-repeat-containing 100.0 3.3E-30 7.1E-35 247.9 27.5 289 131-437 365-668 (888)
49 KOG0292 Vesicle coat complex C 100.0 3.3E-30 7.2E-35 251.6 27.8 284 144-437 12-325 (1202)
50 KOG0643 Translation initiation 100.0 8.8E-30 1.9E-34 217.7 26.7 278 144-433 13-317 (327)
51 PTZ00421 coronin; Provisional 100.0 6.5E-29 1.4E-33 245.4 36.1 284 141-435 22-333 (493)
52 KOG0319 WD40-repeat-containing 100.0 1E-29 2.2E-34 244.3 28.8 283 150-442 292-586 (775)
53 PLN00181 protein SPA1-RELATED; 100.0 3.5E-29 7.6E-34 265.9 35.0 262 160-436 457-741 (793)
54 KOG0277 Peroxisomal targeting 100.0 9.8E-31 2.1E-35 222.0 17.9 236 144-390 63-308 (311)
55 KOG0275 Conserved WD40 repeat- 100.0 5.5E-31 1.2E-35 230.5 16.4 277 143-431 215-507 (508)
56 KOG0265 U5 snRNP-specific prot 100.0 2.1E-29 4.5E-34 218.8 24.2 255 174-442 38-305 (338)
57 KOG0283 WD40 repeat-containing 100.0 9.4E-30 2E-34 248.9 24.4 245 177-436 260-579 (712)
58 KOG0288 WD40 repeat protein Ti 100.0 1.4E-30 3.1E-35 234.8 17.2 287 124-431 162-459 (459)
59 KOG0289 mRNA splicing factor [ 100.0 3.2E-29 7E-34 227.3 25.9 273 144-432 222-505 (506)
60 KOG1446 Histone H3 (Lys4) meth 100.0 5.5E-28 1.2E-32 211.9 32.2 264 178-456 9-285 (311)
61 KOG0310 Conserved WD40 repeat- 100.0 1.2E-28 2.7E-33 226.9 27.0 275 143-434 28-310 (487)
62 KOG0310 Conserved WD40 repeat- 100.0 1.8E-29 3.8E-34 232.5 20.9 246 183-442 26-277 (487)
63 KOG0306 WD40-repeat-containing 100.0 1.8E-28 4E-33 235.9 28.7 278 143-433 67-484 (888)
64 KOG0294 WD40 repeat-containing 100.0 2.5E-28 5.4E-33 213.4 26.8 266 153-436 3-284 (362)
65 KOG0282 mRNA splicing factor [ 100.0 6.6E-30 1.4E-34 234.9 16.1 253 176-442 207-471 (503)
66 KOG0313 Microtubule binding pr 100.0 1E-28 2.2E-33 220.8 22.9 246 181-436 103-379 (423)
67 KOG0296 Angio-associated migra 100.0 4.1E-28 8.8E-33 215.9 26.5 255 176-443 57-366 (399)
68 KOG0292 Vesicle coat complex C 100.0 8E-29 1.7E-33 242.0 20.9 250 178-440 4-287 (1202)
69 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-26 2.8E-31 203.3 32.3 277 142-433 15-303 (311)
70 KOG0772 Uncharacterized conser 100.0 5.3E-28 1.1E-32 223.7 24.7 298 122-431 152-485 (641)
71 KOG0640 mRNA cleavage stimulat 100.0 9.3E-28 2E-32 209.3 21.1 247 176-432 105-425 (430)
72 PTZ00421 coronin; Provisional 100.0 3.7E-26 8.1E-31 225.9 34.0 245 186-440 23-297 (493)
73 PTZ00420 coronin; Provisional 100.0 2.5E-26 5.3E-31 228.2 32.2 261 157-433 50-334 (568)
74 KOG0973 Histone transcription 100.0 3.6E-27 7.9E-32 236.4 26.2 287 142-436 14-358 (942)
75 KOG1408 WD40 repeat protein [F 100.0 1.5E-27 3.4E-32 228.1 22.4 276 152-434 393-714 (1080)
76 KOG0293 WD40 repeat-containing 100.0 1.7E-27 3.7E-32 214.8 21.1 255 176-443 217-480 (519)
77 KOG1539 WD repeat protein [Gen 100.0 1.7E-26 3.8E-31 224.8 28.2 274 152-440 173-613 (910)
78 KOG0264 Nucleosome remodeling 100.0 3.5E-27 7.6E-32 215.8 21.9 245 181-433 122-404 (422)
79 KOG1407 WD40 repeat protein [F 100.0 1.1E-26 2.3E-31 198.3 22.8 252 177-442 14-270 (313)
80 KOG0300 WD40 repeat-containing 100.0 9.9E-27 2.2E-31 203.4 22.8 270 152-436 161-479 (481)
81 KOG0275 Conserved WD40 repeat- 100.0 1.6E-27 3.4E-32 208.9 17.8 247 182-439 212-473 (508)
82 KOG0268 Sof1-like rRNA process 100.0 5.7E-28 1.2E-32 214.7 14.6 245 176-436 59-305 (433)
83 KOG1407 WD40 repeat protein [F 100.0 9E-26 2E-30 192.6 27.3 274 143-432 22-310 (313)
84 PTZ00420 coronin; Provisional 100.0 2.3E-25 5E-30 221.3 33.5 223 201-435 50-295 (568)
85 KOG0269 WD40 repeat-containing 99.9 5.6E-27 1.2E-31 226.6 19.0 286 144-439 42-346 (839)
86 KOG0647 mRNA export protein (c 99.9 2.5E-25 5.4E-30 193.7 26.4 264 143-422 29-312 (347)
87 KOG0646 WD40 repeat protein [G 99.9 5.1E-26 1.1E-30 208.6 23.2 273 161-442 18-316 (476)
88 KOG0288 WD40 repeat protein Ti 99.9 3.2E-27 7E-32 213.2 14.9 254 176-445 168-429 (459)
89 KOG0973 Histone transcription 99.9 7.5E-26 1.6E-30 227.0 25.8 248 181-438 11-317 (942)
90 KOG0278 Serine/threonine kinas 99.9 5.8E-27 1.3E-31 198.6 15.1 263 177-454 8-275 (334)
91 KOG1036 Mitotic spindle checkp 99.9 1.6E-25 3.5E-30 195.5 23.6 243 183-443 13-272 (323)
92 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.3E-24 9.4E-29 201.6 35.5 270 154-441 4-287 (300)
93 KOG0274 Cdc4 and related F-box 99.9 2.3E-25 4.9E-30 220.6 27.6 238 144-403 252-494 (537)
94 KOG0301 Phospholipase A2-activ 99.9 2.4E-25 5.1E-30 213.1 26.6 261 152-435 26-290 (745)
95 KOG0268 Sof1-like rRNA process 99.9 1.4E-26 2.9E-31 206.0 16.5 272 144-439 69-351 (433)
96 KOG0647 mRNA export protein (c 99.9 2.1E-25 4.5E-30 194.2 23.2 243 182-440 26-288 (347)
97 KOG0641 WD40 repeat protein [G 99.9 7.3E-24 1.6E-28 177.3 31.3 280 140-433 31-349 (350)
98 KOG0264 Nucleosome remodeling 99.9 9.7E-26 2.1E-30 206.4 21.6 242 141-391 124-404 (422)
99 KOG1332 Vesicle coat complex C 99.9 1.5E-25 3.2E-30 189.6 19.8 236 147-391 19-286 (299)
100 KOG0639 Transducin-like enhanc 99.9 2.8E-25 6.1E-30 205.1 23.1 275 143-432 421-703 (705)
101 KOG0299 U3 snoRNP-associated p 99.9 6.3E-25 1.4E-29 201.1 24.8 274 143-432 144-455 (479)
102 KOG1036 Mitotic spindle checkp 99.9 8.4E-24 1.8E-28 184.9 29.5 262 143-423 15-294 (323)
103 KOG0308 Conserved WD40 repeat- 99.9 1E-25 2.3E-30 214.0 18.5 271 153-435 39-329 (735)
104 KOG0641 WD40 repeat protein [G 99.9 2.2E-23 4.8E-28 174.4 29.3 247 176-435 26-305 (350)
105 KOG0299 U3 snoRNP-associated p 99.9 1.7E-24 3.7E-29 198.3 23.6 250 176-438 135-415 (479)
106 KOG0305 Anaphase promoting com 99.9 1.3E-24 2.7E-29 207.9 23.8 237 141-393 217-463 (484)
107 KOG0308 Conserved WD40 repeat- 99.9 3.7E-25 8E-30 210.3 19.2 242 188-435 29-287 (735)
108 KOG1274 WD40 repeat protein [G 99.9 5E-24 1.1E-28 210.1 27.0 241 181-434 11-263 (933)
109 KOG0321 WD40 repeat-containing 99.9 2.1E-24 4.5E-29 204.8 22.9 283 152-440 64-398 (720)
110 KOG2106 Uncharacterized conser 99.9 1.4E-22 2.9E-27 187.6 32.9 273 144-433 203-521 (626)
111 KOG4283 Transcription-coupled 99.9 1.2E-23 2.6E-28 182.5 24.2 281 143-433 45-365 (397)
112 KOG2096 WD40 repeat protein [G 99.9 7.8E-24 1.7E-28 185.5 22.6 247 176-431 79-400 (420)
113 KOG0269 WD40 repeat-containing 99.9 5.5E-25 1.2E-29 212.9 16.4 243 143-392 89-341 (839)
114 KOG0643 Translation initiation 99.9 1.1E-22 2.3E-27 174.4 26.0 239 178-425 5-253 (327)
115 KOG0772 Uncharacterized conser 99.9 5.7E-24 1.2E-28 197.2 19.6 262 176-442 160-454 (641)
116 KOG1274 WD40 repeat protein [G 99.9 6.1E-23 1.3E-27 202.4 27.8 273 144-430 18-297 (933)
117 KOG0283 WD40 repeat-containing 99.9 1.4E-23 3.1E-28 205.8 22.5 240 142-392 268-577 (712)
118 KOG0301 Phospholipase A2-activ 99.9 1.5E-23 3.3E-28 200.8 22.1 243 176-440 7-256 (745)
119 KOG2055 WD40 repeat protein [G 99.9 4E-23 8.7E-28 189.3 23.9 280 141-433 213-512 (514)
120 KOG4378 Nuclear protein COP1 [ 99.9 1.9E-23 4.1E-28 192.8 21.4 259 144-415 37-305 (673)
121 KOG4328 WD40 protein [Function 99.9 5.4E-23 1.2E-27 188.4 22.8 284 142-432 187-494 (498)
122 KOG1273 WD40 repeat protein [G 99.9 1.2E-22 2.7E-27 177.8 23.2 278 144-436 26-325 (405)
123 KOG4283 Transcription-coupled 99.9 3.9E-23 8.4E-28 179.4 19.7 223 180-444 40-287 (397)
124 KOG2445 Nuclear pore complex c 99.9 5.1E-22 1.1E-26 173.5 26.7 249 180-434 10-319 (361)
125 KOG0270 WD40 repeat-containing 99.9 1.4E-22 3E-27 185.1 24.0 268 162-441 153-457 (463)
126 KOG2106 Uncharacterized conser 99.9 1.3E-21 2.9E-26 181.2 30.4 294 141-447 154-491 (626)
127 KOG1332 Vesicle coat complex C 99.9 3.4E-23 7.4E-28 175.3 17.8 247 180-434 8-287 (299)
128 KOG0267 Microtubule severing p 99.9 1.8E-24 4E-29 207.8 11.3 212 152-376 41-255 (825)
129 KOG1408 WD40 repeat protein [F 99.9 3E-22 6.6E-27 192.1 25.9 288 147-444 330-682 (1080)
130 KOG0640 mRNA cleavage stimulat 99.9 1.8E-23 3.9E-28 182.6 16.1 208 225-441 111-343 (430)
131 KOG0300 WD40 repeat-containing 99.9 1.1E-22 2.3E-27 178.3 20.8 263 152-436 125-431 (481)
132 KOG0289 mRNA splicing factor [ 99.9 2.3E-22 4.9E-27 183.1 23.4 235 184-431 220-460 (506)
133 KOG0267 Microtubule severing p 99.9 2.3E-24 4.9E-29 207.2 10.8 246 159-425 12-260 (825)
134 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-22 3.7E-27 186.6 21.0 275 152-441 3-288 (673)
135 KOG0302 Ribosome Assembly prot 99.9 2.2E-22 4.7E-27 180.2 19.0 193 236-435 165-380 (440)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-20 5.3E-25 175.9 34.3 252 145-413 34-300 (300)
137 KOG0639 Transducin-like enhanc 99.9 1E-22 2.2E-27 188.2 16.8 249 181-442 417-672 (705)
138 KOG0294 WD40 repeat-containing 99.9 1.1E-21 2.3E-26 172.0 22.2 227 198-440 4-244 (362)
139 KOG0307 Vesicle coat complex C 99.9 3.2E-23 7E-28 209.1 14.4 249 137-394 60-330 (1049)
140 KOG0270 WD40 repeat-containing 99.9 3.6E-22 7.8E-27 182.4 19.6 234 153-396 194-454 (463)
141 KOG2048 WD40 repeat protein [G 99.9 9.4E-21 2E-25 181.4 30.0 245 182-437 24-279 (691)
142 KOG0302 Ribosome Assembly prot 99.9 1.1E-21 2.4E-26 175.7 21.4 218 156-379 170-428 (440)
143 KOG0646 WD40 repeat protein [G 99.9 6.1E-22 1.3E-26 182.0 20.2 266 153-433 52-350 (476)
144 KOG1188 WD40 repeat protein [G 99.9 5.6E-22 1.2E-26 175.6 19.3 275 152-434 41-347 (376)
145 KOG2048 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 180.0 30.1 280 144-434 28-320 (691)
146 KOG1538 Uncharacterized conser 99.9 1.8E-21 3.8E-26 185.7 22.7 273 143-434 14-294 (1081)
147 KOG4328 WD40 protein [Function 99.9 7.4E-21 1.6E-25 174.4 22.5 258 176-444 179-461 (498)
148 KOG1063 RNA polymerase II elon 99.9 6.2E-20 1.3E-24 176.2 27.7 282 145-434 18-392 (764)
149 KOG0650 WD40 repeat nucleolar 99.9 5.9E-21 1.3E-25 180.2 20.4 241 176-431 393-678 (733)
150 KOG2055 WD40 repeat protein [G 99.9 9.2E-21 2E-25 174.0 20.0 245 141-391 257-512 (514)
151 KOG1587 Cytoplasmic dynein int 99.9 6.7E-20 1.4E-24 180.5 26.7 269 161-435 222-518 (555)
152 KOG0307 Vesicle coat complex C 99.9 1.7E-21 3.7E-26 196.9 14.9 246 183-436 64-330 (1049)
153 KOG1063 RNA polymerase II elon 99.9 7.1E-20 1.5E-24 175.8 24.3 338 74-433 259-699 (764)
154 KOG1034 Transcriptional repres 99.9 7.4E-20 1.6E-24 161.4 21.3 274 152-433 55-383 (385)
155 KOG1445 Tumor-specific antigen 99.9 9E-20 2E-24 173.2 22.5 151 286-441 600-758 (1012)
156 KOG0642 Cell-cycle nuclear pro 99.8 2.5E-20 5.4E-25 175.2 16.5 255 176-440 287-568 (577)
157 KOG2445 Nuclear pore complex c 99.8 1.1E-18 2.4E-23 152.8 25.4 237 147-391 21-318 (361)
158 KOG0650 WD40 repeat nucleolar 99.8 1.9E-19 4E-24 170.2 21.4 269 144-430 403-732 (733)
159 PRK11028 6-phosphogluconolacto 99.8 8.3E-18 1.8E-22 161.2 32.3 272 155-434 6-305 (330)
160 KOG2919 Guanine nucleotide-bin 99.8 1.2E-18 2.5E-23 153.6 23.4 245 185-434 51-328 (406)
161 KOG0321 WD40 repeat-containing 99.8 2.4E-19 5.2E-24 170.7 20.3 247 188-440 54-354 (720)
162 KOG0303 Actin-binding protein 99.8 1.1E-18 2.5E-23 157.4 23.0 206 178-394 76-297 (472)
163 COG2319 FOG: WD40 repeat [Gene 99.8 5.8E-17 1.3E-21 159.1 37.2 278 143-434 157-443 (466)
164 KOG1539 WD repeat protein [Gen 99.8 2.8E-17 6E-22 161.2 33.0 273 147-437 42-322 (910)
165 KOG4227 WD40 repeat protein [G 99.8 2.7E-18 5.8E-23 154.8 23.1 248 178-434 51-388 (609)
166 KOG1009 Chromatin assembly com 99.8 2.2E-18 4.8E-23 156.2 22.7 281 152-437 27-376 (434)
167 KOG0290 Conserved WD40 repeat- 99.8 5.2E-18 1.1E-22 147.5 23.7 282 138-429 41-361 (364)
168 KOG1273 WD40 repeat protein [G 99.8 7E-19 1.5E-23 154.4 18.3 195 229-435 26-228 (405)
169 COG2319 FOG: WD40 repeat [Gene 99.8 2E-16 4.3E-21 155.3 37.1 279 143-436 67-362 (466)
170 KOG0303 Actin-binding protein 99.8 3.7E-18 8E-23 154.1 22.2 201 223-436 78-297 (472)
171 KOG2919 Guanine nucleotide-bin 99.8 8E-18 1.7E-22 148.3 23.1 270 143-424 51-361 (406)
172 KOG2096 WD40 repeat protein [G 99.8 3.4E-18 7.5E-23 150.3 19.4 207 220-434 81-309 (420)
173 KOG1007 WD repeat protein TSSC 99.8 7.1E-18 1.5E-22 146.5 20.4 249 162-433 94-361 (370)
174 KOG0322 G-protein beta subunit 99.8 2.1E-18 4.6E-23 147.9 16.3 293 125-433 2-323 (323)
175 KOG0290 Conserved WD40 repeat- 99.8 8.9E-18 1.9E-22 146.0 20.2 234 138-378 93-355 (364)
176 KOG1007 WD repeat protein TSSC 99.8 4.1E-18 9E-23 147.9 17.8 202 143-348 125-361 (370)
177 KOG1517 Guanine nucleotide bin 99.8 4.3E-17 9.4E-22 163.4 24.7 279 147-436 1070-1384(1387)
178 KOG0649 WD40 repeat protein [G 99.8 1.2E-16 2.7E-21 135.6 23.4 234 185-435 12-276 (325)
179 KOG1034 Transcriptional repres 99.8 1.8E-17 3.8E-22 146.5 18.5 228 154-390 108-382 (385)
180 KOG1310 WD40 repeat protein [G 99.8 8.1E-18 1.8E-22 157.7 16.5 247 176-444 43-314 (758)
181 PRK01742 tolB translocation pr 99.8 2.3E-16 5E-21 156.0 25.0 230 161-414 184-426 (429)
182 KOG1188 WD40 repeat protein [G 99.8 1.3E-16 2.8E-21 141.8 20.3 228 196-433 41-297 (376)
183 KOG1524 WD40 repeat-containing 99.8 8.4E-17 1.8E-21 150.6 19.4 260 145-434 18-287 (737)
184 KOG1587 Cytoplasmic dynein int 99.7 2.3E-16 5E-21 155.6 22.5 252 127-392 233-517 (555)
185 KOG2110 Uncharacterized conser 99.7 1.2E-14 2.6E-19 130.8 30.8 273 144-435 8-332 (391)
186 KOG0644 Uncharacterized conser 99.7 1.5E-17 3.2E-22 162.9 11.7 281 137-437 188-472 (1113)
187 KOG1963 WD40 repeat protein [G 99.7 3.6E-15 7.8E-20 147.7 28.5 280 152-442 28-384 (792)
188 KOG1445 Tumor-specific antigen 99.7 8.7E-17 1.9E-21 153.1 16.1 226 158-392 600-845 (1012)
189 KOG2110 Uncharacterized conser 99.7 1.9E-14 4.2E-19 129.5 30.0 238 183-436 5-251 (391)
190 KOG0644 Uncharacterized conser 99.7 8.6E-18 1.9E-22 164.5 8.9 249 176-442 183-435 (1113)
191 PRK03629 tolB translocation pr 99.7 1.3E-14 2.9E-19 143.2 30.0 236 162-413 180-427 (429)
192 KOG0642 Cell-cycle nuclear pro 99.7 2.2E-16 4.8E-21 148.9 16.2 251 141-403 294-573 (577)
193 KOG2139 WD40 repeat protein [G 99.7 1.6E-14 3.5E-19 129.6 26.3 281 141-433 98-431 (445)
194 KOG1963 WD40 repeat protein [G 99.7 1.6E-14 3.4E-19 143.2 28.9 285 151-442 171-496 (792)
195 KOG1538 Uncharacterized conser 99.7 1E-15 2.2E-20 146.7 18.8 227 185-432 14-251 (1081)
196 KOG1240 Protein kinase contain 99.7 1.5E-14 3.3E-19 147.5 28.1 296 128-431 1035-1431(1431)
197 PF02239 Cytochrom_D1: Cytochr 99.7 7E-14 1.5E-18 134.3 31.2 281 152-442 5-356 (369)
198 KOG0649 WD40 repeat protein [G 99.7 8.3E-14 1.8E-18 118.6 27.1 264 152-431 23-314 (325)
199 KOG2139 WD40 repeat protein [G 99.7 7.8E-15 1.7E-19 131.5 21.3 239 184-437 99-387 (445)
200 KOG1517 Guanine nucleotide bin 99.7 4.2E-15 9.1E-20 149.4 21.8 231 152-393 1124-1383(1387)
201 PRK11028 6-phosphogluconolacto 99.7 9.1E-14 2E-18 133.2 30.2 228 200-436 7-261 (330)
202 KOG1524 WD40 repeat-containing 99.7 1.3E-15 2.8E-20 142.7 16.5 204 152-387 76-282 (737)
203 KOG1009 Chromatin assembly com 99.7 5.1E-15 1.1E-19 134.6 19.5 247 183-440 13-336 (434)
204 PRK04922 tolB translocation pr 99.7 3.2E-14 7E-19 141.1 26.9 237 161-413 184-432 (433)
205 KOG1523 Actin-related protein 99.7 1.8E-14 4E-19 127.3 21.4 233 183-424 10-269 (361)
206 PRK02889 tolB translocation pr 99.7 5.4E-14 1.2E-18 139.0 27.4 250 152-414 164-425 (427)
207 KOG1310 WD40 repeat protein [G 99.7 2E-14 4.4E-19 135.2 22.7 207 139-350 48-305 (758)
208 PRK01742 tolB translocation pr 99.7 1.9E-14 4.1E-19 142.5 24.1 209 204-433 183-401 (429)
209 KOG2394 WD40 protein DMR-N9 [G 99.7 7.4E-15 1.6E-19 137.9 19.6 260 152-439 135-458 (636)
210 KOG1334 WD40 repeat protein [G 99.7 1.6E-15 3.4E-20 140.8 14.9 256 176-438 135-429 (559)
211 KOG0771 Prolactin regulatory e 99.7 3.6E-15 7.9E-20 136.4 16.7 200 230-440 148-361 (398)
212 PF08662 eIF2A: Eukaryotic tra 99.7 2.3E-14 5E-19 125.2 20.8 160 270-440 8-185 (194)
213 PRK05137 tolB translocation pr 99.7 1.5E-13 3.2E-18 136.6 29.0 235 162-413 183-432 (435)
214 KOG1523 Actin-related protein 99.6 1.8E-14 3.9E-19 127.3 19.1 205 225-437 9-240 (361)
215 KOG1334 WD40 repeat protein [G 99.6 5E-15 1.1E-19 137.5 14.8 289 141-436 142-469 (559)
216 KOG2111 Uncharacterized conser 99.6 6E-13 1.3E-17 117.8 27.1 241 185-440 7-263 (346)
217 KOG1240 Protein kinase contain 99.6 2.1E-13 4.5E-18 139.4 27.0 255 176-438 1041-1339(1431)
218 KOG2111 Uncharacterized conser 99.6 3.4E-12 7.3E-17 113.1 30.8 273 147-433 11-322 (346)
219 KOG1272 WD40-repeat-containing 99.6 9.2E-16 2E-20 141.5 8.8 259 146-425 134-401 (545)
220 PRK05137 tolB translocation pr 99.6 7.3E-13 1.6E-17 131.6 29.6 219 206-437 183-416 (435)
221 PRK04922 tolB translocation pr 99.6 6.3E-13 1.4E-17 131.9 27.8 216 205-435 184-413 (433)
222 KOG2315 Predicted translation 99.6 6.8E-13 1.5E-17 125.7 25.8 281 144-436 37-393 (566)
223 PF10282 Lactonase: Lactonase, 99.6 2.4E-11 5.2E-16 116.8 37.1 275 154-435 2-324 (345)
224 KOG3881 Uncharacterized conser 99.6 1.6E-13 3.5E-18 124.4 20.1 254 182-440 54-327 (412)
225 KOG1272 WD40-repeat-containing 99.6 6.8E-15 1.5E-19 135.8 10.7 229 185-432 131-361 (545)
226 KOG0771 Prolactin regulatory e 99.6 2.4E-14 5.2E-19 131.0 13.8 192 146-348 149-354 (398)
227 KOG3881 Uncharacterized conser 99.6 1.8E-13 4E-18 124.1 18.9 215 150-373 114-345 (412)
228 PRK03629 tolB translocation pr 99.6 6E-12 1.3E-16 124.4 30.8 216 206-436 180-409 (429)
229 KOG4497 Uncharacterized conser 99.6 2E-13 4.3E-18 121.2 17.6 268 145-436 52-394 (447)
230 PF08662 eIF2A: Eukaryotic tra 99.6 7.4E-13 1.6E-17 115.8 20.5 142 246-398 37-185 (194)
231 KOG2321 WD40 repeat protein [G 99.6 5.3E-13 1.2E-17 126.5 20.7 246 181-434 49-344 (703)
232 KOG1354 Serine/threonine prote 99.6 7E-13 1.5E-17 118.4 20.1 245 183-437 25-363 (433)
233 TIGR02800 propeller_TolB tol-p 99.5 6E-12 1.3E-16 124.8 27.7 234 162-411 171-416 (417)
234 PRK00178 tolB translocation pr 99.5 1.1E-11 2.4E-16 123.3 29.2 236 162-413 180-427 (430)
235 PF02239 Cytochrom_D1: Cytochr 99.5 1.1E-11 2.4E-16 119.1 28.0 245 152-400 49-356 (369)
236 KOG4497 Uncharacterized conser 99.5 1.8E-13 3.8E-18 121.4 13.8 220 147-389 14-238 (447)
237 KOG2394 WD40 protein DMR-N9 [G 99.5 1.7E-13 3.7E-18 128.8 14.0 166 152-325 186-384 (636)
238 KOG0309 Conserved WD40 repeat- 99.5 2.6E-13 5.6E-18 132.0 14.9 284 144-434 27-340 (1081)
239 PRK02889 tolB translocation pr 99.5 1.9E-11 4E-16 121.0 27.9 214 206-432 177-402 (427)
240 KOG0322 G-protein beta subunit 99.5 3.4E-13 7.4E-18 116.2 12.5 157 182-347 149-322 (323)
241 PRK01029 tolB translocation pr 99.5 3.8E-11 8.3E-16 118.3 28.6 244 161-415 165-426 (428)
242 PRK04792 tolB translocation pr 99.5 3.3E-11 7.2E-16 119.7 28.2 233 162-413 199-446 (448)
243 KOG0280 Uncharacterized conser 99.5 7.5E-12 1.6E-16 109.7 20.2 269 160-435 45-335 (339)
244 TIGR02658 TTQ_MADH_Hv methylam 99.5 6.9E-10 1.5E-14 104.5 34.6 267 161-441 27-338 (352)
245 KOG1409 Uncharacterized conser 99.5 4.2E-12 9.1E-17 113.5 18.3 270 151-434 36-395 (404)
246 KOG2321 WD40 repeat protein [G 99.4 4E-12 8.6E-17 120.7 17.2 199 152-393 146-345 (703)
247 TIGR02800 propeller_TolB tol-p 99.4 1.2E-10 2.7E-15 115.4 28.8 215 206-433 171-397 (417)
248 PRK00178 tolB translocation pr 99.4 3E-10 6.5E-15 113.0 29.5 218 206-436 180-409 (430)
249 PRK01029 tolB translocation pr 99.4 2.5E-10 5.4E-15 112.6 26.9 215 147-371 190-426 (428)
250 KOG2041 WD40 repeat protein [G 99.4 6.4E-11 1.4E-15 115.2 21.5 288 138-432 11-336 (1189)
251 KOG4547 WD40 repeat-containing 99.4 9.1E-11 2E-15 112.3 22.1 187 152-349 6-221 (541)
252 COG5354 Uncharacterized protei 99.4 3.4E-10 7.3E-15 106.5 25.2 284 140-439 31-354 (561)
253 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.4E-09 5.2E-14 100.9 31.2 237 159-400 75-339 (352)
254 KOG4547 WD40 repeat-containing 99.4 3.5E-11 7.5E-16 115.1 18.8 216 193-440 3-227 (541)
255 KOG1912 WD40 repeat protein [G 99.4 1.2E-10 2.6E-15 114.4 21.9 285 143-436 17-367 (1062)
256 COG2706 3-carboxymuconate cycl 99.4 1E-08 2.2E-13 93.3 32.5 272 160-439 15-327 (346)
257 PRK04792 tolB translocation pr 99.4 1.2E-09 2.6E-14 108.6 29.1 216 206-435 199-427 (448)
258 KOG0974 WD-repeat protein WDR6 99.3 6.3E-11 1.4E-15 120.0 19.0 260 153-435 18-290 (967)
259 PF10282 Lactonase: Lactonase, 99.3 1.4E-08 3.1E-13 97.6 34.2 255 152-411 49-345 (345)
260 KOG2314 Translation initiation 99.3 1.3E-09 2.8E-14 103.5 24.8 281 143-435 251-575 (698)
261 KOG0974 WD-repeat protein WDR6 99.3 6.4E-11 1.4E-15 120.0 16.9 188 147-349 95-289 (967)
262 KOG4227 WD40 repeat protein [G 99.3 4.9E-11 1.1E-15 108.3 14.1 171 261-436 50-228 (609)
263 COG4946 Uncharacterized protei 99.3 4.9E-09 1.1E-13 97.9 27.3 211 152-374 278-503 (668)
264 COG5354 Uncharacterized protei 99.3 3.7E-09 8E-14 99.6 26.2 259 161-436 108-398 (561)
265 TIGR03300 assembly_YfgL outer 99.3 5.4E-09 1.2E-13 102.1 28.8 268 151-442 65-347 (377)
266 TIGR03300 assembly_YfgL outer 99.3 3.4E-09 7.3E-14 103.6 26.7 256 151-430 105-376 (377)
267 PF04762 IKI3: IKI3 family; I 99.3 1.4E-08 3E-13 108.3 31.9 271 152-436 88-459 (928)
268 KOG1064 RAVE (regulator of V-A 99.3 3.2E-11 6.9E-16 127.8 11.5 185 152-358 2221-2408(2439)
269 KOG0280 Uncharacterized conser 99.3 5E-10 1.1E-14 98.4 17.1 228 153-391 87-333 (339)
270 KOG1064 RAVE (regulator of V-A 99.2 8.1E-11 1.7E-15 124.8 12.7 197 181-400 2206-2407(2439)
271 KOG2315 Predicted translation 99.2 4.5E-09 9.9E-14 100.2 23.1 251 146-413 130-410 (566)
272 PLN02919 haloacid dehalogenase 99.2 2.8E-08 6.1E-13 107.9 31.3 244 187-437 571-892 (1057)
273 KOG1354 Serine/threonine prote 99.2 6.3E-09 1.4E-13 93.5 19.6 243 144-393 28-361 (433)
274 KOG2314 Translation initiation 99.1 4.8E-08 1E-12 93.1 25.4 280 141-434 210-526 (698)
275 COG5170 CDC55 Serine/threonine 99.1 8.1E-09 1.8E-13 91.6 16.8 240 183-432 26-366 (460)
276 KOG2041 WD40 repeat protein [G 99.1 4.6E-09 1E-13 102.6 16.4 237 183-433 14-297 (1189)
277 KOG1409 Uncharacterized conser 99.1 2E-08 4.3E-13 90.4 19.0 250 174-437 15-274 (404)
278 KOG3914 WD repeat protein WDR4 99.1 3.2E-09 6.9E-14 97.4 13.8 159 186-358 65-233 (390)
279 KOG4532 WD40-like repeat conta 99.1 1.7E-07 3.7E-12 81.8 23.6 231 194-436 83-334 (344)
280 PF15492 Nbas_N: Neuroblastoma 99.1 6.9E-07 1.5E-11 79.2 27.8 238 151-440 8-266 (282)
281 PRK04043 tolB translocation pr 99.0 6.9E-07 1.5E-11 87.8 29.0 214 161-392 169-401 (419)
282 COG2706 3-carboxymuconate cycl 99.0 8.4E-07 1.8E-11 81.0 26.7 228 204-437 15-278 (346)
283 KOG4190 Uncharacterized conser 99.0 4.9E-09 1.1E-13 99.5 12.7 263 152-429 748-1032(1034)
284 KOG4532 WD40-like repeat conta 99.0 1.5E-07 3.3E-12 82.0 20.8 221 151-377 84-320 (344)
285 KOG1912 WD40 repeat protein [G 99.0 9.7E-08 2.1E-12 94.4 21.9 244 184-441 16-312 (1062)
286 KOG4190 Uncharacterized conser 99.0 1.5E-09 3.3E-14 102.9 9.1 248 174-431 726-986 (1034)
287 PRK04043 tolB translocation pr 99.0 1.6E-06 3.4E-11 85.2 30.5 214 206-435 170-402 (419)
288 COG4946 Uncharacterized protei 99.0 6.3E-07 1.4E-11 84.2 25.5 147 147-300 327-480 (668)
289 PRK11138 outer membrane biogen 99.0 4.6E-07 1E-11 89.0 26.6 258 151-432 120-393 (394)
290 PF08450 SGL: SMP-30/Gluconola 99.0 3.7E-06 8E-11 76.9 30.7 216 188-421 4-243 (246)
291 PRK11138 outer membrane biogen 99.0 3.3E-07 7.2E-12 90.0 25.2 275 151-441 69-361 (394)
292 PLN02919 haloacid dehalogenase 99.0 1.2E-06 2.6E-11 95.4 31.0 238 147-395 573-892 (1057)
293 KOG3914 WD repeat protein WDR4 98.9 1.9E-08 4.1E-13 92.4 13.7 165 270-440 65-230 (390)
294 KOG1832 HIV-1 Vpr-binding prot 98.9 7.1E-10 1.5E-14 110.5 4.5 216 176-419 1094-1317(1516)
295 KOG4714 Nucleoporin [Nuclear s 98.9 5E-08 1.1E-12 84.7 14.3 165 177-349 83-255 (319)
296 KOG1645 RING-finger-containing 98.9 8.1E-08 1.8E-12 88.3 16.4 258 163-433 175-461 (463)
297 PF13360 PQQ_2: PQQ-like domai 98.9 1.2E-06 2.5E-11 79.7 24.5 221 160-398 2-237 (238)
298 KOG1920 IkappaB kinase complex 98.8 1.4E-06 3.1E-11 90.6 25.0 237 143-393 70-324 (1265)
299 PF13360 PQQ_2: PQQ-like domai 98.8 4.1E-06 8.8E-11 76.1 25.1 216 203-439 1-236 (238)
300 KOG0309 Conserved WD40 repeat- 98.8 7.3E-08 1.6E-12 94.8 12.6 198 235-440 35-239 (1081)
301 PF00400 WD40: WD domain, G-be 98.8 2.8E-08 6E-13 62.2 6.5 39 393-431 1-39 (39)
302 PF08450 SGL: SMP-30/Gluconola 98.8 3.2E-05 6.9E-10 70.7 29.2 218 147-378 5-244 (246)
303 KOG1275 PAB-dependent poly(A) 98.8 2.9E-07 6.3E-12 92.8 16.1 181 194-389 146-340 (1118)
304 COG5170 CDC55 Serine/threonine 98.8 2E-07 4.4E-12 82.9 13.4 210 225-440 25-316 (460)
305 KOG0882 Cyclophilin-related pe 98.7 2.3E-07 5E-12 86.5 12.8 240 152-399 21-313 (558)
306 KOG1275 PAB-dependent poly(A) 98.7 6.3E-07 1.4E-11 90.4 16.3 185 235-432 146-341 (1118)
307 KOG4714 Nucleoporin [Nuclear s 98.7 4E-07 8.6E-12 79.2 12.9 146 151-298 101-255 (319)
308 KOG1832 HIV-1 Vpr-binding prot 98.7 2.2E-08 4.8E-13 100.2 5.5 251 143-422 1103-1378(1516)
309 cd00216 PQQ_DH Dehydrogenases 98.7 1.6E-05 3.5E-10 80.1 26.2 278 151-443 61-434 (488)
310 KOG2695 WD40 repeat protein [G 98.7 9E-08 2E-12 86.3 8.6 142 154-301 227-380 (425)
311 PRK02888 nitrous-oxide reducta 98.7 1.5E-05 3.2E-10 79.6 24.7 275 130-434 54-405 (635)
312 PF07433 DUF1513: Protein of u 98.6 8.8E-05 1.9E-09 67.9 27.0 219 152-376 17-273 (305)
313 PF04762 IKI3: IKI3 family; I 98.6 0.00017 3.7E-09 77.5 33.4 287 131-436 246-567 (928)
314 PF07433 DUF1513: Protein of u 98.6 0.00012 2.5E-09 67.2 27.1 236 186-435 7-285 (305)
315 KOG2695 WD40 repeat protein [G 98.6 2.6E-07 5.7E-12 83.4 9.7 151 283-446 228-389 (425)
316 PF06977 SdiA-regulated: SdiA- 98.6 3.8E-05 8.3E-10 69.2 23.6 204 177-388 15-247 (248)
317 PF06433 Me-amine-dh_H: Methyl 98.6 3.7E-05 8E-10 71.2 23.4 235 161-401 67-330 (342)
318 KOG2066 Vacuolar assembly/sort 98.6 4.3E-06 9.2E-11 83.6 18.4 186 142-348 40-233 (846)
319 PF00400 WD40: WD domain, G-be 98.5 3.5E-07 7.5E-12 57.2 6.5 37 175-211 3-39 (39)
320 KOG3617 WD40 and TPR repeat-co 98.5 4.1E-06 8.8E-11 84.0 17.0 110 185-298 17-132 (1416)
321 KOG2114 Vacuolar assembly/sort 98.5 3.4E-05 7.5E-10 77.9 23.5 211 185-407 27-260 (933)
322 KOG3617 WD40 and TPR repeat-co 98.5 7.2E-06 1.6E-10 82.3 18.0 109 141-254 15-131 (1416)
323 PF08596 Lgl_C: Lethal giant l 98.5 3E-05 6.4E-10 75.2 21.9 245 185-436 3-338 (395)
324 PF06433 Me-amine-dh_H: Methyl 98.5 0.0002 4.3E-09 66.5 25.3 269 161-442 17-329 (342)
325 KOG2066 Vacuolar assembly/sort 98.4 2E-05 4.3E-10 79.0 19.0 183 183-391 39-233 (846)
326 KOG1008 Uncharacterized conser 98.4 9.4E-08 2E-12 92.8 2.6 199 142-349 57-276 (783)
327 KOG3621 WD40 repeat-containing 98.4 6.3E-05 1.4E-09 74.5 21.1 277 142-437 36-357 (726)
328 PF11768 DUF3312: Protein of u 98.4 0.0011 2.3E-08 65.1 29.2 120 319-442 209-338 (545)
329 COG0823 TolB Periplasmic compo 98.4 7.4E-05 1.6E-09 73.2 21.7 206 161-380 173-390 (425)
330 KOG1008 Uncharacterized conser 98.4 3.1E-07 6.7E-12 89.3 4.5 240 183-433 56-335 (783)
331 KOG1645 RING-finger-containing 98.4 8.5E-05 1.9E-09 68.8 19.9 251 124-391 169-461 (463)
332 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00022 4.8E-09 68.9 24.3 253 159-422 21-346 (353)
333 cd00216 PQQ_DH Dehydrogenases 98.4 0.00082 1.8E-08 67.9 28.9 237 152-401 111-434 (488)
334 KOG0882 Cyclophilin-related pe 98.3 3.7E-06 7.9E-11 78.7 10.6 208 225-440 8-238 (558)
335 PRK02888 nitrous-oxide reducta 98.3 0.00024 5.1E-09 71.2 23.2 216 191-423 200-451 (635)
336 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0019 4.1E-08 56.9 28.0 140 152-296 24-164 (354)
337 PF04053 Coatomer_WDAD: Coatom 98.3 0.00036 7.8E-09 68.6 24.3 220 179-434 28-263 (443)
338 KOG2114 Vacuolar assembly/sort 98.3 0.00024 5.2E-09 72.0 22.4 206 143-360 27-255 (933)
339 KOG1920 IkappaB kinase complex 98.3 0.00028 6.1E-09 74.2 23.3 207 226-435 68-324 (1265)
340 PF14583 Pectate_lyase22: Olig 98.2 0.0053 1.1E-07 58.3 29.5 281 142-433 36-381 (386)
341 PF00780 CNH: CNH domain; Int 98.2 0.0031 6.6E-08 58.6 27.8 227 151-403 7-267 (275)
342 PF11768 DUF3312: Protein of u 98.2 0.00015 3.3E-09 70.8 18.5 135 162-300 185-332 (545)
343 PF04053 Coatomer_WDAD: Coatom 98.2 0.00093 2E-08 65.8 24.2 225 141-391 32-262 (443)
344 PF02897 Peptidase_S9_N: Proly 98.1 0.0073 1.6E-07 59.8 30.0 247 186-437 126-408 (414)
345 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0094 2E-07 58.6 29.6 197 162-376 62-276 (410)
346 PF03178 CPSF_A: CPSF A subuni 98.1 0.0018 3.9E-08 61.7 24.0 215 161-387 2-261 (321)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.011 2.5E-07 60.0 30.7 283 151-444 69-501 (527)
348 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0028 6.2E-08 55.8 22.3 122 195-325 23-145 (354)
349 PF04841 Vps16_N: Vps16, N-ter 98.0 0.01 2.2E-07 58.4 28.0 198 206-415 62-271 (410)
350 COG3391 Uncharacterized conser 98.0 0.016 3.6E-07 56.5 31.2 263 163-440 13-290 (381)
351 COG3391 Uncharacterized conser 98.0 0.022 4.9E-07 55.5 28.6 225 184-413 74-308 (381)
352 PF15492 Nbas_N: Neuroblastoma 97.9 0.0036 7.7E-08 56.1 19.9 42 359-402 229-270 (282)
353 KOG3621 WD40 repeat-containing 97.9 0.00019 4.1E-09 71.3 12.4 117 229-349 38-155 (726)
354 PF00780 CNH: CNH domain; Int 97.8 0.017 3.8E-07 53.5 24.6 227 193-442 5-264 (275)
355 PF08553 VID27: VID27 cytoplas 97.8 0.0007 1.5E-08 70.4 15.5 142 195-347 493-646 (794)
356 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.017 3.6E-07 55.9 24.3 231 143-379 44-347 (353)
357 KOG4640 Anaphase-promoting com 97.8 0.00013 2.8E-09 71.6 9.3 90 144-236 23-115 (665)
358 PF08553 VID27: VID27 cytoplas 97.8 0.002 4.4E-08 67.0 18.5 134 160-296 503-646 (794)
359 COG3204 Uncharacterized protei 97.7 0.011 2.4E-07 53.4 20.2 164 180-348 82-263 (316)
360 PF03178 CPSF_A: CPSF A subuni 97.7 0.0084 1.8E-07 57.1 21.3 134 161-298 62-203 (321)
361 PF08596 Lgl_C: Lethal giant l 97.7 0.0079 1.7E-07 58.5 21.0 194 175-377 78-324 (395)
362 PF06977 SdiA-regulated: SdiA- 97.7 0.036 7.7E-07 50.2 25.4 198 225-430 20-247 (248)
363 COG0823 TolB Periplasmic compo 97.7 0.0019 4E-08 63.5 16.5 166 262-436 187-361 (425)
364 smart00320 WD40 WD40 repeats. 97.7 0.00014 2.9E-09 44.0 5.8 38 394-431 3-40 (40)
365 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0037 8.1E-08 48.1 14.3 99 186-292 2-109 (111)
366 KOG4640 Anaphase-promoting com 97.5 0.00057 1.2E-08 67.2 9.2 92 183-276 20-114 (665)
367 KOG4441 Proteins containing BT 97.5 0.011 2.5E-07 60.5 19.0 217 161-392 301-547 (571)
368 KOG4499 Ca2+-binding protein R 97.4 0.067 1.5E-06 46.8 20.3 205 195-413 27-263 (310)
369 PF05694 SBP56: 56kDa selenium 97.4 0.076 1.7E-06 51.1 22.6 195 237-438 88-347 (461)
370 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.18 4E-06 51.4 29.6 249 150-402 119-501 (527)
371 COG3386 Gluconolactonase [Carb 97.4 0.08 1.7E-06 49.6 22.5 216 190-423 31-275 (307)
372 PHA02713 hypothetical protein; 97.4 0.012 2.7E-07 60.3 18.6 222 162-396 273-538 (557)
373 KOG4441 Proteins containing BT 97.4 0.019 4.1E-07 58.9 19.6 231 193-434 283-547 (571)
374 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.17 3.7E-06 49.3 25.2 87 311-400 303-407 (415)
375 smart00320 WD40 WD40 repeats. 97.3 0.00074 1.6E-08 40.6 5.6 36 176-211 5-40 (40)
376 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.022 4.7E-07 44.0 14.2 101 318-428 2-109 (111)
377 PHA02713 hypothetical protein; 97.3 0.014 2.9E-07 60.0 17.3 179 161-353 320-538 (557)
378 KOG2079 Vacuolar assembly/sort 97.3 0.0039 8.5E-08 65.2 12.9 97 153-253 101-202 (1206)
379 PF07995 GSDH: Glucose / Sorbo 97.3 0.18 4E-06 48.1 25.4 237 185-428 3-330 (331)
380 COG3386 Gluconolactonase [Carb 97.3 0.17 3.7E-06 47.5 24.8 209 157-379 43-275 (307)
381 PF14727 PHTB1_N: PTHB1 N-term 97.3 0.22 4.9E-06 48.6 31.3 279 152-445 38-372 (418)
382 KOG2395 Protein involved in va 97.2 0.013 2.8E-07 56.9 14.2 137 157-298 352-501 (644)
383 PF02897 Peptidase_S9_N: Proly 97.1 0.19 4.2E-06 49.7 23.2 193 235-433 134-357 (414)
384 PRK13616 lipoprotein LpqB; Pro 97.1 0.086 1.9E-06 54.2 20.6 180 153-348 322-527 (591)
385 PRK13616 lipoprotein LpqB; Pro 97.1 0.029 6.3E-07 57.6 17.2 151 268-433 350-525 (591)
386 COG3490 Uncharacterized protei 96.8 0.41 8.8E-06 43.3 21.0 234 186-430 70-345 (366)
387 KOG2395 Protein involved in va 96.7 0.019 4E-07 55.8 11.4 137 199-348 350-500 (644)
388 PF15390 DUF4613: Domain of un 96.7 0.084 1.8E-06 52.3 15.8 152 227-391 20-186 (671)
389 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0061 1.3E-07 39.3 5.5 34 183-217 11-44 (47)
390 PF14583 Pectate_lyase22: Olig 96.7 0.61 1.3E-05 44.6 23.6 225 190-424 42-303 (386)
391 KOG3630 Nuclear pore complex, 96.7 0.024 5.2E-07 59.9 12.6 148 184-335 101-263 (1405)
392 KOG2444 WD40 repeat protein [G 96.7 0.004 8.7E-08 54.0 6.0 162 125-299 12-179 (238)
393 PHA03098 kelch-like protein; P 96.7 0.12 2.6E-06 53.0 18.1 179 162-352 312-515 (534)
394 KOG2079 Vacuolar assembly/sort 96.7 0.0063 1.4E-07 63.7 8.4 112 225-347 88-202 (1206)
395 PF05096 Glu_cyclase_2: Glutam 96.6 0.57 1.2E-05 42.4 23.2 199 130-334 33-249 (264)
396 PF10647 Gmad1: Lipoprotein Lp 96.5 0.62 1.4E-05 42.6 22.7 156 185-344 25-192 (253)
397 PF12894 Apc4_WD40: Anaphase-p 96.5 0.011 2.5E-07 38.0 5.8 35 403-438 11-45 (47)
398 COG5276 Uncharacterized conser 96.5 0.64 1.4E-05 42.3 27.4 150 147-301 92-245 (370)
399 TIGR03074 PQQ_membr_DH membran 96.5 0.95 2.1E-05 48.1 23.0 227 151-399 194-485 (764)
400 KOG2444 WD40 repeat protein [G 96.3 0.0059 1.3E-07 53.0 4.7 102 330-435 72-179 (238)
401 PF05096 Glu_cyclase_2: Glutam 96.3 0.8 1.7E-05 41.5 22.7 182 185-378 46-249 (264)
402 PRK10115 protease 2; Provision 96.3 1.9 4.1E-05 45.7 30.9 240 185-436 128-397 (686)
403 PHA03098 kelch-like protein; P 96.2 0.22 4.8E-06 51.1 16.8 191 230-435 289-513 (534)
404 PF14870 PSII_BNR: Photosynthe 96.2 1.1 2.3E-05 42.0 25.9 234 141-388 61-301 (302)
405 KOG1916 Nuclear protein, conta 95.8 0.015 3.3E-07 59.8 5.7 159 161-353 153-328 (1283)
406 PF12234 Rav1p_C: RAVE protein 95.7 0.56 1.2E-05 48.1 16.2 120 177-298 23-157 (631)
407 PF15390 DUF4613: Domain of un 95.7 1.4 3E-05 44.2 18.0 170 184-369 20-212 (671)
408 PHA02790 Kelch-like protein; P 95.6 0.6 1.3E-05 47.1 16.4 132 162-301 288-427 (480)
409 PF10168 Nup88: Nuclear pore c 95.6 3.8 8.2E-05 43.3 23.9 96 183-301 84-183 (717)
410 PF14870 PSII_BNR: Photosynthe 95.5 2.1 4.6E-05 40.0 28.6 268 143-430 18-301 (302)
411 PF12234 Rav1p_C: RAVE protein 95.5 0.53 1.2E-05 48.3 15.3 109 270-390 32-155 (631)
412 PF10168 Nup88: Nuclear pore c 95.3 0.75 1.6E-05 48.4 16.0 38 402-439 145-185 (717)
413 KOG3630 Nuclear pore complex, 95.3 0.082 1.8E-06 56.1 8.7 148 269-421 102-261 (1405)
414 KOG2247 WD40 repeat-containing 95.2 0.0023 5E-08 61.4 -2.3 143 271-426 38-181 (615)
415 KOG1983 Tomosyn and related SN 95.2 0.8 1.7E-05 50.2 16.5 231 184-437 36-268 (993)
416 TIGR02604 Piru_Ver_Nterm putat 95.2 1.3 2.8E-05 43.0 16.5 148 268-424 14-204 (367)
417 PRK10115 protease 2; Provision 95.1 5.4 0.00012 42.3 25.2 196 229-433 129-344 (686)
418 KOG1897 Damage-specific DNA bi 95.1 5.8 0.00013 42.3 24.3 153 269-436 776-945 (1096)
419 TIGR02604 Piru_Ver_Nterm putat 95.0 3.9 8.4E-05 39.7 23.4 101 184-286 14-142 (367)
420 TIGR03548 mutarot_permut cycli 94.9 3.6 7.9E-05 39.1 19.6 106 194-300 72-197 (323)
421 PF08728 CRT10: CRT10; InterP 94.9 1.4 2.9E-05 45.9 16.0 155 142-296 39-245 (717)
422 PF05694 SBP56: 56kDa selenium 94.8 4.2 9.1E-05 39.6 24.7 240 172-422 53-392 (461)
423 TIGR03074 PQQ_membr_DH membran 94.8 6.8 0.00015 41.8 23.9 155 279-441 260-485 (764)
424 PRK13684 Ycf48-like protein; P 94.7 4.2 9.2E-05 38.9 30.1 264 147-431 51-329 (334)
425 KOG1897 Damage-specific DNA bi 94.6 7.5 0.00016 41.5 27.1 272 151-436 595-901 (1096)
426 COG3292 Predicted periplasmic 94.5 5 0.00011 40.2 18.0 274 136-428 159-442 (671)
427 KOG2280 Vacuolar assembly/sort 94.4 2.9 6.2E-05 43.1 16.5 176 143-327 85-271 (829)
428 COG3204 Uncharacterized protei 94.3 2.1 4.5E-05 39.2 13.8 120 312-436 82-213 (316)
429 COG5167 VID27 Protein involved 94.1 0.85 1.8E-05 44.7 11.8 141 194-348 478-632 (776)
430 COG3490 Uncharacterized protei 94.1 4.5 9.8E-05 36.9 21.3 210 226-441 67-318 (366)
431 KOG2377 Uncharacterized conser 94.1 0.9 2E-05 43.9 11.7 133 152-286 34-172 (657)
432 PF07569 Hira: TUP1-like enhan 93.7 0.57 1.2E-05 41.7 9.5 74 226-300 12-98 (219)
433 PF11635 Med16: Mediator compl 93.7 7.7 0.00017 41.6 19.4 189 238-428 64-345 (753)
434 PF10313 DUF2415: Uncharacteri 93.7 0.36 7.8E-06 30.2 5.6 32 184-215 1-35 (43)
435 smart00036 CNH Domain found in 93.6 6.5 0.00014 37.0 28.2 233 153-401 14-280 (302)
436 PF14761 HPS3_N: Hermansky-Pud 93.3 4.1 8.8E-05 35.7 13.5 104 328-436 29-166 (215)
437 PF12657 TFIIIC_delta: Transcr 93.2 0.55 1.2E-05 40.1 8.4 72 143-214 6-122 (173)
438 KOG2280 Vacuolar assembly/sort 93.2 5.2 0.00011 41.4 16.0 180 205-400 64-255 (829)
439 TIGR03547 muta_rot_YjhT mutatr 93.0 8.9 0.00019 36.8 18.1 83 162-245 86-210 (346)
440 PLN02193 nitrile-specifier pro 92.9 9 0.0002 38.6 17.8 138 162-301 194-355 (470)
441 COG5276 Uncharacterized conser 92.9 7.6 0.00016 35.7 25.4 196 225-436 85-288 (370)
442 KOG2247 WD40 repeat-containing 92.8 0.013 2.8E-07 56.4 -2.4 130 186-326 37-170 (615)
443 KOG4460 Nuclear pore complex, 92.7 4 8.8E-05 40.3 13.8 100 315-441 103-206 (741)
444 PHA02790 Kelch-like protein; P 92.6 5.9 0.00013 40.0 16.1 131 161-299 331-472 (480)
445 PRK13684 Ycf48-like protein; P 92.6 10 0.00022 36.3 26.7 233 141-389 89-329 (334)
446 KOG4460 Nuclear pore complex, 92.5 4.4 9.5E-05 40.1 13.9 94 185-301 105-202 (741)
447 TIGR02276 beta_rpt_yvtn 40-res 92.5 0.8 1.7E-05 28.3 6.3 41 325-367 1-41 (42)
448 PF10313 DUF2415: Uncharacteri 92.4 0.7 1.5E-05 28.9 5.6 32 316-349 1-34 (43)
449 KOG4499 Ca2+-binding protein R 92.4 7.6 0.00016 34.4 17.0 141 183-333 108-271 (310)
450 PLN02153 epithiospecifier prot 92.3 11 0.00024 36.1 18.2 139 161-300 101-287 (341)
451 PF14655 RAB3GAP2_N: Rab3 GTPa 92.3 2.4 5.3E-05 41.5 12.2 82 177-258 301-402 (415)
452 PRK14131 N-acetylneuraminic ac 92.3 12 0.00026 36.5 19.6 56 231-288 80-149 (376)
453 COG5167 VID27 Protein involved 92.2 2.4 5.2E-05 41.7 11.7 137 157-299 486-634 (776)
454 PF08728 CRT10: CRT10; InterP 92.1 8.7 0.00019 40.2 16.3 111 318-432 103-245 (717)
455 KOG1900 Nuclear pore complex, 92.1 2.5 5.4E-05 46.3 12.8 139 285-435 95-274 (1311)
456 PF14781 BBS2_N: Ciliary BBSom 92.1 5.3 0.00011 32.1 13.8 121 273-399 4-133 (136)
457 PF10647 Gmad1: Lipoprotein Lp 92.0 9.6 0.00021 34.8 21.5 142 228-378 25-184 (253)
458 PF10395 Utp8: Utp8 family; I 91.9 18 0.00038 37.6 19.3 168 183-357 129-314 (670)
459 PF14727 PHTB1_N: PTHB1 N-term 91.6 15 0.00032 36.2 27.3 221 194-431 36-316 (418)
460 PRK14131 N-acetylneuraminic ac 91.3 15 0.00033 35.7 21.9 84 160-245 49-149 (376)
461 TIGR03548 mutarot_permut cycli 91.2 14 0.0003 35.1 20.8 115 230-353 67-199 (323)
462 PF14761 HPS3_N: Hermansky-Pud 90.9 11 0.00023 33.2 15.8 108 237-350 29-165 (215)
463 KOG2377 Uncharacterized conser 90.8 8 0.00017 37.7 13.4 146 231-383 27-177 (657)
464 PLN02153 epithiospecifier prot 90.6 16 0.00036 34.9 21.4 71 229-300 79-170 (341)
465 TIGR03547 muta_rot_YjhT mutatr 90.6 17 0.00036 34.9 20.0 57 230-288 58-128 (346)
466 PF07569 Hira: TUP1-like enhan 90.3 1.6 3.5E-05 38.8 8.2 76 275-354 18-101 (219)
467 COG3823 Glutamine cyclotransfe 89.7 13 0.00028 32.4 15.6 170 160-334 67-247 (262)
468 PF10433 MMS1_N: Mono-function 89.7 25 0.00055 35.7 23.9 246 152-413 223-503 (504)
469 COG1520 FOG: WD40-like repeat 89.2 23 0.00049 34.4 26.5 203 150-359 67-279 (370)
470 COG4590 ABC-type uncharacteriz 88.9 4.7 0.0001 39.1 10.3 163 179-353 216-391 (733)
471 PF03088 Str_synth: Strictosid 88.5 5.7 0.00012 29.6 8.6 42 338-379 35-76 (89)
472 TIGR03118 PEPCTERM_chp_1 conse 88.2 22 0.00048 33.0 24.2 219 185-413 24-307 (336)
473 PF12768 Rax2: Cortical protei 88.2 11 0.00024 34.9 12.2 89 161-252 16-121 (281)
474 PF10214 Rrn6: RNA polymerase 87.9 43 0.00093 36.2 24.4 163 265-435 77-278 (765)
475 TIGR03118 PEPCTERM_chp_1 conse 87.8 23 0.0005 32.9 21.4 206 229-440 25-286 (336)
476 PF14781 BBS2_N: Ciliary BBSom 87.4 14 0.0003 29.8 12.0 106 188-298 3-126 (136)
477 PLN02193 nitrile-specifier pro 87.4 35 0.00075 34.4 19.4 156 194-354 175-357 (470)
478 PF12768 Rax2: Cortical protei 87.1 15 0.00033 34.0 12.4 115 246-368 16-145 (281)
479 COG4590 ABC-type uncharacteriz 87.1 2.4 5.3E-05 41.0 7.3 169 261-439 214-392 (733)
480 KOG1900 Nuclear pore complex, 86.5 11 0.00024 41.7 12.5 141 202-349 96-273 (1311)
481 PF11715 Nup160: Nucleoporin N 86.1 19 0.00041 37.1 14.1 67 235-301 157-252 (547)
482 KOG1898 Splicing factor 3b, su 85.7 25 0.00055 38.1 14.2 133 161-297 912-1048(1205)
483 PF13449 Phytase-like: Esteras 85.2 35 0.00077 32.4 17.8 164 267-434 19-250 (326)
484 PF02333 Phytase: Phytase; In 85.0 39 0.00085 32.7 20.6 186 237-435 69-292 (381)
485 TIGR02276 beta_rpt_yvtn 40-res 84.8 5.5 0.00012 24.3 6.1 41 369-411 1-41 (42)
486 PLN00033 photosystem II stabil 84.7 42 0.00091 32.9 25.8 111 267-388 280-396 (398)
487 PF12657 TFIIIC_delta: Transcr 84.7 7.9 0.00017 33.0 8.9 31 404-434 86-122 (173)
488 PF07676 PD40: WD40-like Beta 84.6 4.6 0.0001 24.4 5.5 29 182-210 7-38 (39)
489 PF11715 Nup160: Nucleoporin N 84.2 8.9 0.00019 39.5 10.7 73 150-222 157-257 (547)
490 KOG1916 Nuclear protein, conta 84.0 1.5 3.2E-05 46.1 4.5 111 205-325 111-234 (1283)
491 COG3823 Glutamine cyclotransfe 83.3 31 0.00067 30.2 14.3 173 194-377 55-246 (262)
492 PLN00033 photosystem II stabil 82.2 54 0.0012 32.2 31.3 145 270-430 241-396 (398)
493 PF11635 Med16: Mediator compl 81.8 81 0.0017 34.0 19.9 189 152-343 63-345 (753)
494 PF10395 Utp8: Utp8 family; I 81.8 71 0.0015 33.4 24.9 243 190-441 34-313 (670)
495 PF10214 Rrn6: RNA polymerase 81.7 82 0.0018 34.1 27.1 117 267-392 145-277 (765)
496 COG5290 IkappaB kinase complex 80.4 83 0.0018 33.4 15.0 220 183-414 112-347 (1243)
497 COG5290 IkappaB kinase complex 80.0 23 0.0005 37.1 11.1 90 188-280 251-349 (1243)
498 KOG1898 Splicing factor 3b, su 79.7 1E+02 0.0022 33.8 27.4 114 138-251 536-668 (1205)
499 PF07995 GSDH: Glucose / Sorbo 79.2 32 0.0007 32.8 11.7 104 318-426 4-136 (331)
500 COG3292 Predicted periplasmic 78.7 80 0.0017 32.1 17.0 190 152-352 301-495 (671)
No 1
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-66 Score=495.09 Aligned_cols=422 Identities=52% Similarity=0.888 Sum_probs=346.3
Q ss_pred CCCCCCceeccCCCC-CCccccccceec---CCCCccccccccCCCccHHHHHHHHHHHhC-----------------CC
Q 012679 23 NSKENLDRFIPNRSA-MDFDYAHYMVTE---GRKDKENNQAMSVCSPSKEAYRKQLAEVFN-----------------MN 81 (458)
Q Consensus 23 ~~~~~~dr~ip~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 81 (458)
++....|||||.|.. .+++..++.+.+ .......+. .....+.+...+...+. .+
T Consensus 41 ~~~~~~~rf~P~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~ 116 (484)
T KOG0305|consen 41 PSSKVGDRFIPSRLSSEEFNRNFKYIGSFSRPNKRSALDT----GRESSSLAASLLRSELFKSNKITSEQSLRALPDEPN 116 (484)
T ss_pred cccccCCccCCcccchhhcccccccccccccccccccccc----ccccchhhhhhhhhhhhccCccchhhhhhhccCCcc
Confidence 555667999999988 577776665443 111000000 00111122222222211 22
Q ss_pred CCceeeccCCCCCCCcCCCCcCCCcccCCcccc-ccccCCCCCCCCCCCceeeeCCCCCCccccceeeccCCCeEEEEcC
Q 012679 82 RTRILAFKNKPPTPVELIPEMHSSSASASSSVQ-QAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALG 160 (458)
Q Consensus 82 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d 160 (458)
..|||.|+..++.+...........+....+.. ...+++..|+++..|+++||||++.+|||+|.++|+..++++++++
T Consensus 117 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~r~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg 196 (484)
T KOG0305|consen 117 RDRILTYKSKAPRPRSRTQEPDSVYPSAESSIRLLSSPRKLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALG 196 (484)
T ss_pred ccceeEecccCCCCccccccccccccccccccccccccccccCcccCChhhhccCCcccccHhhhHhhcccCCeEEEEec
Confidence 279999998877642222222211111111111 1235778899999999999999999999999999999999999999
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEE
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILT 240 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~ 240 (458)
..||+|+..++.+..++.+. ...|+++.|+++|.+||+|..+|.|.|||..+.+.++.+...|..+|.+++|++..+.
T Consensus 197 ~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~ls 274 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLS 274 (484)
T ss_pred ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEE
Confidence 99999999999988888775 7889999999999999999999999999999999999999879999999999999999
Q ss_pred EEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeE
Q 012679 241 TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320 (458)
Q Consensus 241 sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 320 (458)
+|+.+|.|.++|++..+..+..+.+|.++||+++|++|+++||+|++|+.+.|||...... +..+..|.++|++
T Consensus 275 sGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p------~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 275 SGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP------KFTFTEHTAAVKA 348 (484)
T ss_pred EecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc------cEEEeccceeeeE
Confidence 9999999999999998887777889999999999999999999999999999999966555 7889999999999
Q ss_pred EEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe
Q 012679 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS 400 (458)
Q Consensus 321 l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~ 400 (458)
++|||+...+||+|+|+.|++|++||+.+|+.+..+.++++|+++.|++..++|++++|+.++.|.||++++.+++..+.
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~ 428 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL 428 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCCCCCCccccccccC
Q 012679 401 GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR 458 (458)
Q Consensus 401 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ir 458 (458)
+|..+|.+++++|||..+++|+.|++++||++++..+.... .......+..+..||
T Consensus 429 gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~~~--~~~~~s~~~~~~~iR 484 (484)
T KOG0305|consen 429 GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERPKSTK--KKENTSVLSLTSGIR 484 (484)
T ss_pred CCcceeEEEEECCCCCEEEEecccCcEEeccccCCCCcccc--ccccccccccccccC
Confidence 99999999999999999999999999999999987433322 123334444444444
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.4e-44 Score=316.87 Aligned_cols=286 Identities=24% Similarity=0.413 Sum_probs=247.5
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.+-++.|++ ..+++++.|.++++||+.+... ++++++|...|.||+|+|||+.||+|+.||.|++||.++++++..
T Consensus 117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~ 194 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR 194 (480)
T ss_pred cEEEEEecCCCceEEecCCCceEEeeccCCCCc--ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc
Confidence 345567766 6799999999999999998876 889999999999999999999999999999999999999987765
Q ss_pred ecCCCcccEEEEEeC-------CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 221 LRGGHRSRVGSLAWN-------NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 221 ~~~~~~~~v~~l~~~-------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
-..+|...|++|+|. ..+|++++.||.|+|||+..+. ++..+.+|+.+|+|+.|--+ .+|++|+.|++|++
T Consensus 195 ~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkv 272 (480)
T KOG0271|consen 195 ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKV 272 (480)
T ss_pred cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCC-ceEEecCCCceEEE
Confidence 544599999999994 3689999999999999998665 47889999999999999644 48999999999999
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecC-----------C------------------------CCcEEEEeCCCC
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP-----------F------------------------QSNLLATGGGGG 338 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-----------~------------------------~~~ll~s~~g~~ 338 (458)
|+...+.. ...+++|...|+.++.+. . +...+++|+ .
T Consensus 273 w~a~dG~~------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs--D 344 (480)
T KOG0271|consen 273 WRALDGKL------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS--D 344 (480)
T ss_pred EEccchhH------HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec--C
Confidence 99988776 788999999999998872 1 223578876 9
Q ss_pred CCeEEEEECCCCC-eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC
Q 012679 339 DRCIKFWNTHTGA-CLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC 416 (458)
Q Consensus 339 d~~i~lwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~ 416 (458)
|.++.+|+-...+ ++..+. +..-|+.+.|+||++++++++ -|..|++|+..+++.+.+|+||-..|..++|+.|.+
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS--FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS--FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee--cccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 9999999976543 555443 445699999999999999954 799999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEecCCCCcccccC
Q 012679 417 TVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 417 ~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
+|++|+.|.+|++|++...+.....+
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred EEEEcCCCceEEEEEeeeeeecccCC
Confidence 99999999999999998766554433
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.1e-44 Score=320.88 Aligned_cols=282 Identities=21% Similarity=0.397 Sum_probs=254.7
Q ss_pred CCCCCCccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC--CCEEEEEecCCeEEEE
Q 012679 135 APDLVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLW 210 (458)
Q Consensus 135 ~~~~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~--g~~la~g~~dg~v~iw 210 (458)
...+.++..+..+.++. +.+++++.+|.++||+..+... ++++.+|...|.++.|+|. +..+|+|+.||++++|
T Consensus 169 ~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~--~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL--LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred hhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce--eEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 44555666676677765 6799999999999999998855 8899999999999999996 6789999999999999
Q ss_pred eCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC
Q 012679 211 DSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND 288 (458)
Q Consensus 211 d~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d 288 (458)
++.+...+..+.+ |..+|..++|+ |++|++++.|.+-++||++++.. +....||...|.+++|++||.++++||.|
T Consensus 247 ~~~~e~~l~~l~g-H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 247 KLSQETPLQDLEG-HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred ccCCCcchhhhhc-chhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCceeeccCcc
Confidence 9999999999998 99999999995 79999999999999999998875 45677999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEE
Q 012679 289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLW 367 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~ 367 (458)
..-+|||++++.. +..+.+|..+|.+++|+|+ ++.+|+|+ .|++++|||++...++.++..+ .-|+.+.|
T Consensus 325 ~~~RvWDlRtgr~------im~L~gH~k~I~~V~fsPN-Gy~lATgs--~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~ 395 (459)
T KOG0272|consen 325 SLGRVWDLRTGRC------IMFLAGHIKEILSVAFSPN-GYHLATGS--SDNTCKVWDLRMRSELYTIPAHSNLVSQVKY 395 (459)
T ss_pred chhheeecccCcE------EEEecccccceeeEeECCC-ceEEeecC--CCCcEEEeeecccccceecccccchhhheEe
Confidence 9999999999988 8999999999999999995 78888887 9999999999999998888655 56899999
Q ss_pred cCC-CCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 368 NKN-ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 368 s~~-~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
+|. |.+|++ +..|++++||...++.++.++.||.+.|.++++++|+++++|++.|.++++|.
T Consensus 396 ~p~~g~fL~T--asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 396 SPQEGYFLVT--ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCCeEEEE--cccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 994 555555 33799999999999999999999999999999999999999999999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-42 Score=305.38 Aligned_cols=279 Identities=25% Similarity=0.492 Sum_probs=250.2
Q ss_pred CccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEeC
Q 012679 140 DDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-----DGRHIAIGLNNCQVQLWDS 212 (458)
Q Consensus 140 ~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-----~g~~la~g~~dg~v~iwd~ 212 (458)
.+-.+.+++|+| ..+++++.||+|++||.++|+. .-..+.+|...|++++|.| ..++||+++.||.|+|||+
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 345788999998 5689999999999999999875 3567899999999999976 6789999999999999999
Q ss_pred CCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEc-----------CCCC
Q 012679 213 TANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWS-----------ASGQ 280 (458)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s-----------pd~~ 280 (458)
..+.++..+.+ |..+|+|+.|. ..+|++|+.|++|++|+...+. +...+++|...|+.++.+ |.++
T Consensus 235 ~~~~~~~~lsg-HT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~-~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 235 KLGTCVRTLSG-HTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred cCceEEEEecc-CccceEEEEEcCCceEEecCCCceEEEEEccchh-HHHhhcccchheeeeeccchhhhhccccccccc
Confidence 99999999998 99999999997 5899999999999999998754 578899999999999877 2233
Q ss_pred -------------------------EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679 281 -------------------------QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 281 -------------------------~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
.|++|+.|+++.+|+...... ++.++.+|..-|..+.|+|+ ..++|+++
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-----pi~rmtgHq~lVn~V~fSPd-~r~IASaS 386 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-----PITRMTGHQALVNHVSFSPD-GRYIASAS 386 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-----chhhhhchhhheeeEEECCC-ccEEEEee
Confidence 499999999999999765543 37788999999999999997 55667766
Q ss_pred CCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCC
Q 012679 336 GGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD 414 (458)
Q Consensus 336 g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd 414 (458)
.|..|++||.++|+.+.++. +-..|..++|+.|.+.|++ |..|.++++|++++.+....+.||.+.|.++.|+||
T Consensus 387 --FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS--~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD 462 (480)
T KOG0271|consen 387 --FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS--GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD 462 (480)
T ss_pred --cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE--cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence 99999999999999999998 5578999999999999999 779999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEe
Q 012679 415 GCTVASAAADETLRFWN 431 (458)
Q Consensus 415 g~~l~s~s~Dg~i~iW~ 431 (458)
|+.+++|+.|..+++|.
T Consensus 463 G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 463 GQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceeecCCCceEEEeec
Confidence 99999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.1e-41 Score=288.44 Aligned_cols=274 Identities=22% Similarity=0.455 Sum_probs=248.5
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc-----
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----- 215 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----- 215 (458)
.+.+++|++ .++++++.||.+.|||.-+........+ ....|..++|+|.|+++|+|+-|....||++.+.
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~ 134 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN 134 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--CceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc
Confidence 366789986 6799999999999999888776444444 4788999999999999999999999999999865
Q ss_pred -eeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEE
Q 012679 216 -RQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLH 292 (458)
Q Consensus 216 -~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~ 292 (458)
...+.+.+ |.+.+.|+.| +...|++++.|.+..+||+++++. +..+.+|.+.|.++.++| +++.+++|+-|+..+
T Consensus 135 ~~v~r~l~g-HtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~-~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 135 VRVSRELAG-HTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQ-TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred ceeeeeecC-ccceeEEEEEcCCCceEecCCCceEEEEEcccceE-EEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 34455665 9999999999 788999999999999999998886 788999999999999999 999999999999999
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEEcC
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNK 369 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~s~ 369 (458)
+||++.+.. .+.|.+|...|.++.|.|+ +.-+++|+ .|++.++||++..+.+..+.+. ..|++++|+.
T Consensus 213 lWD~R~~~c------~qtF~ghesDINsv~ffP~-G~afatGS--DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 213 LWDVRSGQC------VQTFEGHESDINSVRFFPS-GDAFATGS--DDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred eeeccCcce------eEeecccccccceEEEccC-CCeeeecC--CCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 999999987 8999999999999999996 56677766 9999999999999999888764 5699999999
Q ss_pred CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
.|++|++ |+.|..+.+||.-.++.+..+.||.++|.++..+|||..|+||+.|.+|+||.
T Consensus 284 SGRlLfa--gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFA--GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccEEEe--eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999 78999999999999999999999999999999999999999999999999994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-38 Score=271.24 Aligned_cols=270 Identities=21% Similarity=0.321 Sum_probs=234.9
Q ss_pred CCCeEEEEcCCEEEEEECCCCCe---eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcc
Q 012679 151 SSNVLAIALGSTVYLWDASDGTT---SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS 227 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~---~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~ 227 (458)
++.++.++.|..+.+|++..... ..+..+.+|...|..+..++||++.++++.||++++||+.+++..+.|.+ |..
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~ 106 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTK 106 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEe-cCC
Confidence 46788999999999999875332 23778899999999999999999999999999999999999999999988 999
Q ss_pred cEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCCCCC
Q 012679 228 RVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNS 303 (458)
Q Consensus 228 ~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~~~~ 303 (458)
.|.+++++ +..+++|++|.+|++|++.........-.++...|.|+.|+|+ ..+|++++.|++|++||+++.+.
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-- 184 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-- 184 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--
Confidence 99999994 6899999999999999997554322222234789999999997 78999999999999999999877
Q ss_pred cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC
Q 012679 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN 383 (458)
Q Consensus 304 ~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~ 383 (458)
.+.+.+|++.++.++++||| .+.++|+ .||.+.+||++.++.+..+.+...|.+++|+|+...|+++. +.
T Consensus 185 ----~~~~~gh~~~v~t~~vSpDG-slcasGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at---~~ 254 (315)
T KOG0279|consen 185 ----RTTFIGHSGYVNTVTVSPDG-SLCASGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT---AT 254 (315)
T ss_pred ----hhccccccccEEEEEECCCC-CEEecCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc---CC
Confidence 77888999999999999974 5667766 99999999999999999999999999999999999988865 44
Q ss_pred cEEEEeCCCceeeEEEe----CC-----CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 384 QLTLWKYPSMVKMAELS----GH-----TSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 384 ~i~iwd~~~~~~~~~~~----~h-----~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
.|+|||+.+...+.++. +. .....+++|++||+.|+.|-.|+.|++|.+.
T Consensus 255 sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 255 SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 59999999988877764 22 2346788999999999999999999999875
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.6e-39 Score=289.69 Aligned_cols=252 Identities=25% Similarity=0.435 Sum_probs=232.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC----CeEEEEeCCCcEEEEEccCC
Q 012679 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN----HILTTGGMDGLIINNDVRVR 256 (458)
Q Consensus 181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~sg~~dg~i~vwd~~~~ 256 (458)
+...+|..+.|+.|++.||+|+.+|.++||+..+...+.++.+ |...|.++.|++ ..+++|+.||++++|++...
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG-HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEec-cccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 5578999999999999999999999999999999999999998 999999999953 48999999999999999865
Q ss_pred CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679 257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG 336 (458)
Q Consensus 257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g 336 (458)
. ++..+.+|...|..++|+|+|++|++++.|.+-++||++++.. +....+|...|.+++|.|+ +.++++||
T Consensus 252 ~-~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E------lL~QEGHs~~v~~iaf~~D-GSL~~tGG- 322 (459)
T KOG0272|consen 252 T-PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE------LLLQEGHSKGVFSIAFQPD-GSLAATGG- 322 (459)
T ss_pred c-chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh------hHhhcccccccceeEecCC-CceeeccC-
Confidence 4 5788999999999999999999999999999999999999887 7778899999999999997 56788877
Q ss_pred CCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-C
Q 012679 337 GGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-D 414 (458)
Q Consensus 337 ~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-d 414 (458)
.|..-+|||+++|.++..+..+ .+|.++.|+|+|..+++ |+.|++++|||++....+.++.+|.+-|+.+.|+| .
T Consensus 323 -lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lAT--gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 323 -LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLAT--GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred -ccchhheeecccCcEEEEecccccceeeEeECCCceEEee--cCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 9999999999999999998764 67999999999999999 77899999999999999999999999999999999 7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCcccccCCCC
Q 012679 415 GCTVASAAADETLRFWNVFGAPQVISKSAPK 445 (458)
Q Consensus 415 g~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~ 445 (458)
|.+|+|++.|++++||.-.+..++.......
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe 430 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHE 430 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccchhhcCCc
Confidence 8999999999999999998888877766443
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-36 Score=278.33 Aligned_cols=281 Identities=23% Similarity=0.445 Sum_probs=252.5
Q ss_pred CCCCccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 012679 137 DLVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA 214 (458)
Q Consensus 137 ~~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~ 214 (458)
+..+.-.+++++|+. +.|+++..||.++||+...+. +.++..|.++|.++.|+..|+||++++.||++.+||..+
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh---hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 334445799999984 668888899999999976544 577888999999999999999999999999999999999
Q ss_pred ceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 215 NRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 215 ~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
+...+.+.. |..+-..+.| +...+++.+.||.|+|+.+.... ++.++.+|.++|.++.|+|.|.+|++++.|++++|
T Consensus 308 g~~~q~f~~-~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 308 GTVKQQFEF-HSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKI 385 (524)
T ss_pred ceEEEeeee-ccCCccceEEecCceEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCceEEEecCCCeeEe
Confidence 999998887 8888888999 67899999999999999998555 57888999999999999999999999999999999
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCC--------CcEEEEeCCCCCCeEEEEECCCCCeeEEE-eCCCCeEE
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ--------SNLLATGGGGGDRCIKFWNTHTGACLNSV-DTGSQVCA 364 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--------~~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~~~~~v~~ 364 (458)
|....... .+.+.+|...|..+.|+|.+ +..+++++ .|++|++||+..+.++.++ ++..+|.+
T Consensus 386 Ws~~~~~~------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 386 WSMGQSNS------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred eecCCCcc------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEee--cCCeEEEEEccCCceeEeeccCCCceEE
Confidence 99887766 78899999999999999865 34666666 8999999999999999999 77889999
Q ss_pred EEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 365 ~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
++|+|+++++++ |..||.|.+|+.++++.++++.+ .+.|..++|+.+|..|..+-.||.+++-|+.
T Consensus 458 vafS~~g~ylAs--Gs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 458 VAFSPNGRYLAS--GSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEecCCCcEEEe--cCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999 88999999999999999999875 4569999999999999999999999999875
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=256.22 Aligned_cols=278 Identities=20% Similarity=0.344 Sum_probs=235.7
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRV 229 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v 229 (458)
-.+++++.|.+|++|.+.+|.+ ..++....+.|..+...|+++.||+++.. .|++||+.+++ .+.++.+ |...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C--~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~-h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGIC--SRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEG-HTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeE--EEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEec-cCCce
Confidence 3478888999999999999998 66777667899999999999999998776 89999998876 5788887 99999
Q ss_pred EEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee
Q 012679 230 GSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW 307 (458)
Q Consensus 230 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 307 (458)
+++.| +|+.+++|+.||+++|||++... ......|..+|+++..+|+...|++|..+|.|++||+.......
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~---- 160 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH---- 160 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc----
Confidence 99999 69999999999999999999844 34455678999999999999999999999999999998876521
Q ss_pred eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe------eEEEe-CCCCeEEEEEcCCCCeEEEEecC
Q 012679 308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC------LNSVD-TGSQVCALLWNKNERELLSSHGF 380 (458)
Q Consensus 308 ~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~------~~~~~-~~~~v~~~~~s~~~~~l~~~~g~ 380 (458)
..+......|.+++..|+|..+.+.. ..|..++|++-+..- +..+. +...+..+.+||++++|++++
T Consensus 161 -~liPe~~~~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-- 234 (311)
T KOG0315|consen 161 -ELIPEDDTSIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-- 234 (311)
T ss_pred -ccCCCCCcceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec--
Confidence 12223457899999999988777754 789999999987543 33333 356689999999999999964
Q ss_pred CCCcEEEEeCCCc-eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCC
Q 012679 381 TQNQLTLWKYPSM-VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPK 445 (458)
Q Consensus 381 ~d~~i~iwd~~~~-~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~ 445 (458)
.|.+++||+..+. +....+++|...+...+||.||+||+||+.|+++++|++..++++......+
T Consensus 235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 8999999999998 5566789999999999999999999999999999999999998776655433
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.7e-36 Score=252.54 Aligned_cols=291 Identities=21% Similarity=0.258 Sum_probs=247.9
Q ss_pred CCCcccCCccccccccCCCCCCCCCCCceeeeCCCCCCccccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecC
Q 012679 103 HSSSASASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDD 181 (458)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~ 181 (458)
.+++|.-....|+....+..|.|+ ..|..+|.+...+ ...++++....|++||+.+++..++.++++
T Consensus 14 vsA~YDhTIRfWqa~tG~C~rTiq------------h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 14 VSAGYDHTIRFWQALTGICSRTIQ------------HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred EeccCcceeeeeehhcCeEEEEEe------------cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEec
Confidence 345566566666666655555553 3456788888877 678999999999999999999889999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCee
Q 012679 182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHI 259 (458)
Q Consensus 182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~ 259 (458)
|...|++|.|..+|+++++|+.||+++|||++...+.+.+. |.++|+++..+ ...|++|..+|.|++||+....+.
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 99999999999999999999999999999999988777777 88999999995 478999999999999999987655
Q ss_pred EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679 260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339 (458)
Q Consensus 260 ~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d 339 (458)
...+......|.++...|||.+++.+.+.|.+++|++-.........++.+++.|.+.+..+.++|++.+ ||+++ .|
T Consensus 160 ~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~-lat~s--sd 236 (311)
T KOG0315|consen 160 HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY-LATCS--SD 236 (311)
T ss_pred cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE-EEeec--CC
Confidence 5555666788999999999999999999999999999988777778889999999999999999997554 55555 89
Q ss_pred CeEEEEECCCC-CeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEc
Q 012679 340 RCIKFWNTHTG-ACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS 412 (458)
Q Consensus 340 ~~i~lwd~~~~-~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~s 412 (458)
.+++||++.+. +....++.+ .-+...+||.++.||++ |..|+++++|++..++.+....+|-....|++..
T Consensus 237 ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvT--assd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVT--ASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEe--cCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 99999999988 333344433 45999999999999999 5689999999999999999999999888887764
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-36 Score=269.16 Aligned_cols=275 Identities=23% Similarity=0.403 Sum_probs=246.1
Q ss_pred cceeeccCCC--eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC-ceeeEE
Q 012679 144 LNLLDWGSSN--VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-NRQLRT 220 (458)
Q Consensus 144 ~~~~~~~~~~--~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-~~~~~~ 220 (458)
+..+-+++.. +++++.|++|++||..+|++ ...+.+|.+.|.+|+|+..|++||+++.|-.+++||..+ .++++.
T Consensus 111 vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks 188 (406)
T KOG0295|consen 111 VTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS 188 (406)
T ss_pred eeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH
Confidence 4444556654 34444699999999999998 788999999999999999999999999998899999987 556666
Q ss_pred ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 221 LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
+.+ |...|.++.| .|++|+++++|.+|+.||+.++.+ +.++.+|...|..+..+.||.++|++++|.+|++|-..+
T Consensus 189 ~~g-h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c-v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t 266 (406)
T KOG0295|consen 189 LIG-HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC-VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT 266 (406)
T ss_pred hcC-cccceeeEEEEecCCeeeecccccceeEEeccccee-EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc
Confidence 666 9999999999 689999999999999999998875 899999999999999999999999999999999999998
Q ss_pred CCCCCcceeeeeecccccceeEEEecCC--------------CCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeE
Q 012679 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPF--------------QSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVC 363 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~--------------~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~ 363 (458)
... ...+..|.-+|.+++|.|. +..++.+++ .|++|++||+.+|.++.++.. ..-|+
T Consensus 267 ~~~------k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 267 KQC------KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred chh------hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec--ccceEEEEeccCCeEEEEEecccceee
Confidence 876 6778899999999999874 224677665 999999999999999999865 56799
Q ss_pred EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
.++|+|.|+||+++. +|+++++||+.+++++.++..|..-|++++|..+..+++||+-|.++++|..
T Consensus 339 ~~af~p~Gkyi~Sca--DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCA--DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEcCCCeEEEEEe--cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999975 8999999999999999999999999999999999999999999999999975
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=279.27 Aligned_cols=290 Identities=23% Similarity=0.432 Sum_probs=248.5
Q ss_pred ceeeeCCCCCCccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeE
Q 012679 130 ERTLDAPDLVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQV 207 (458)
Q Consensus 130 ~~~l~~~~~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v 207 (458)
.+...+.--.....++.+.|.+ .+|++++..|.+.+|+..+-.. ...+..|..+|+++.|+++|.++++|..+|.|
T Consensus 85 tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 85 TKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGTWMISGDKGGMI 162 (464)
T ss_pred cceEeccccccccceeeEEEcCCCceeEeecccccEEEecCceeeH--HHHhhhhcccceeEEEccCCCEEEEcCCCceE
Confidence 3344443334445688899988 4799999999999999754333 23356899999999999999999999999999
Q ss_pred EEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE
Q 012679 208 QLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG 285 (458)
Q Consensus 208 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg 285 (458)
++|+..-. .++.+...|...|.+++|+ ...+++++.||+|+|||...... ...+.+|.-.|.+++|+|...++|+|
T Consensus 163 KyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 163 KYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKGLIASG 240 (464)
T ss_pred Eecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccceeEEc
Confidence 99996644 3455555467999999995 68999999999999999986654 56779999999999999999999999
Q ss_pred ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEE
Q 012679 286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCA 364 (458)
Q Consensus 286 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~ 364 (458)
|.|+.|++||.+++.+ +.++..|...|.++.|+|++ ++|++++ .|..++++|+++.+.+.++. +...+++
T Consensus 241 skDnlVKlWDprSg~c------l~tlh~HKntVl~~~f~~n~-N~Llt~s--kD~~~kv~DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSC------LATLHGHKNTVLAVKFNPNG-NWLLTGS--KDQSCKVFDIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred cCCceeEeecCCCcch------hhhhhhccceEEEEEEcCCC-CeeEEcc--CCceEEEEehhHhHHHHHhhcchhhhee
Confidence 9999999999999988 88999999999999999987 7777776 99999999999888888887 5678999
Q ss_pred EEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE-eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 365 ~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
+.|+|-..-|+++ |+.||.|..|.+...+++..+ .+|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 312 ~~WhP~~~~lfts-gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 312 LTWHPLNESLFTS-GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eccccccccceee-ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999999988887 558999999999977766665 4799999999999999999999999999999754
No 13
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.2e-37 Score=269.98 Aligned_cols=278 Identities=20% Similarity=0.434 Sum_probs=241.1
Q ss_pred ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679 143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~ 222 (458)
.+-|+.+..+.+++|..|++|+|||..+..+ +..+.+|++.|.|+.|. .+.|++|+.|.+|+|||+++++++.++.
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~~~c--~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNSLEC--LKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred ceEEEEecchhhhcccccCceEEeccccHHH--HHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHh
Confidence 4567888889999999999999999988776 77889999999999995 5699999999999999999999999998
Q ss_pred CCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCe--eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679 223 GGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDH--IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 223 ~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
. |...|..+.|++.++++++.|..|.+||+..... +...+.||...|+.+.| |.+++++++.|.+|++|++.+..
T Consensus 275 h-HceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 275 H-HCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred h-hcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEecccee
Confidence 7 9999999999999999999999999999987652 34567899999999998 46799999999999999999987
Q ss_pred CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC-eEEEEEcCCCCeEEEEec
Q 012679 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHG 379 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~g 379 (458)
. +.++.+|...|.|+.+ ...++++|+ .|.+|++||+..|.+++.++.+.. |.++.| +.+.+++ |
T Consensus 352 f------vRtl~gHkRGIAClQY---r~rlvVSGS--SDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS--G 416 (499)
T KOG0281|consen 352 F------VRTLNGHKRGIACLQY---RDRLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS--G 416 (499)
T ss_pred e------ehhhhcccccceehhc---cCeEEEecC--CCceEEEEeccccHHHHHHhchHHhhhheee--cCceeee--c
Confidence 7 8899999999988876 457888876 999999999999999999877654 778877 4567777 7
Q ss_pred CCCCcEEEEeCCCce---------eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679 380 FTQNQLTLWKYPSMV---------KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444 (458)
Q Consensus 380 ~~d~~i~iwd~~~~~---------~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~ 444 (458)
.-||.|+|||+..+. ++.++..|+++|..+.| |...+++++.|.+|.|||+.++.........
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~~~~~~r 488 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPSAAEETR 488 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCccccccCC
Confidence 789999999997653 34456679999999999 6678999999999999999988776544433
No 14
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.8e-34 Score=256.20 Aligned_cols=284 Identities=19% Similarity=0.285 Sum_probs=235.3
Q ss_pred ccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 141 d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
+.+...++.+.+-+++++.|..-+||+..+|.. ...+.+|.+.|+++.|+.||.+||+|..+|.|+||+..++.....
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~ 143 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK 143 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE
Confidence 333333333334577788899999999999986 889999999999999999999999999999999999999998888
Q ss_pred ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
+.. .-..+.=+.|+ +.+|++|+.||.+.+|.+..+ ...+.+.+|..++++-.|.|+|+.++++..||+|++||+.+
T Consensus 144 ~~~-e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 144 LDQ-EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred eec-ccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence 874 55667777786 589999999999999999875 34788999999999999999999999999999999999988
Q ss_pred CCCCCcce-------------------------------------eeeeec--------ccccceeEEEecCCCCc--EE
Q 012679 299 ASSNSVTQ-------------------------------------WLHRLE--------EHTSAVKAIAWCPFQSN--LL 331 (458)
Q Consensus 299 ~~~~~~~~-------------------------------------~~~~~~--------~h~~~v~~l~~~p~~~~--ll 331 (458)
+....... .+.... .+...+.++.+.|.... |+
T Consensus 222 g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~ 301 (399)
T KOG0296|consen 222 GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA 301 (399)
T ss_pred CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh
Confidence 76421100 000001 22233344444444333 45
Q ss_pred EEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ 411 (458)
Q Consensus 332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 411 (458)
|+| +.||+|.|||+...+......+...|+.+.|-+ ..+|++++ .+|.|+.||.++++.+.++.||...|.++++
T Consensus 302 A~G--~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c--~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l 376 (399)
T KOG0296|consen 302 ACG--SVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC--ANGKVRQWDARTGQLKFTYTGHQMGILDFAL 376 (399)
T ss_pred hcc--cccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec--cCceEEeeeccccceEEEEecCchheeEEEE
Confidence 554 499999999999999999999999999999999 88888854 8999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecC
Q 012679 412 SPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 412 spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
+|++++++|+|.|++.+||++.
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999874
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.3e-35 Score=265.69 Aligned_cols=284 Identities=23% Similarity=0.433 Sum_probs=237.0
Q ss_pred ccceeeccC--C-CeEEEEcCCEEEEEECCCC--CeeeEEEe------c----CCCCCEEEEEEcCCCCEEEEEecCCeE
Q 012679 143 YLNLLDWGS--S-NVLAIALGSTVYLWDASDG--TTSELVTV------D----DENGPVTSVNWAPDGRHIAIGLNNCQV 207 (458)
Q Consensus 143 ~~~~~~~~~--~-~~la~~~d~~v~iwd~~~~--~~~~~~~~------~----~h~~~V~~v~~s~~g~~la~g~~dg~v 207 (458)
.+.+.+|+| . .+.+++.+...++|++... .......+ . .....|++++|+.+|..||+|+.||.+
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ 259 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEA 259 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEE
Confidence 467889998 3 4666667889999998741 11110001 1 124579999999999999999999999
Q ss_pred EEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE
Q 012679 208 QLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG 285 (458)
Q Consensus 208 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg 285 (458)
+||+. .|.++.++.. |.++|.+|.|+ |++|++++.||++.+||..++.. ...+.-|..+-..+.|- +...|+++
T Consensus 260 riw~~-~G~l~~tl~~-HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~-~~~~F~ts 335 (524)
T KOG0273|consen 260 RIWNK-DGNLISTLGQ-HKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQ-SNDEFATS 335 (524)
T ss_pred EEEec-Cchhhhhhhc-cCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEe-cCceEeec
Confidence 99995 5677778877 99999999996 68999999999999999987764 66777788887788996 45578999
Q ss_pred ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEE
Q 012679 286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCA 364 (458)
Q Consensus 286 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~ 364 (458)
+.|+.|+|+.+....+ +.++.+|.+.|.++.|+|. ..||++++ .|+++++|+.....+...+..+ ..|..
T Consensus 336 ~td~~i~V~kv~~~~P------~~t~~GH~g~V~alk~n~t-g~LLaS~S--dD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 336 STDGCIHVCKVGEDRP------VKTFIGHHGEVNALKWNPT-GSLLASCS--DDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred CCCceEEEEEecCCCc------ceeeecccCceEEEEECCC-CceEEEec--CCCeeEeeecCCCcchhhhhhhccceee
Confidence 9999999999987766 8889999999999999994 67888887 9999999999988888887654 47999
Q ss_pred EEEcCCCC---------eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 365 LLWNKNER---------ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 365 ~~~s~~~~---------~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
+.|+|.+. .++++ ..|++|++||+..+.+++.|..|..+|.+++|+|+|+++|+|+.||.|.+|++..+
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sa--s~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASA--SFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred EeecCCCCccCCCcCCceEEEe--ecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence 99998753 34443 37999999999999999999999999999999999999999999999999999887
Q ss_pred Cccccc
Q 012679 436 PQVISK 441 (458)
Q Consensus 436 ~~~~~~ 441 (458)
+..+..
T Consensus 485 ~l~~s~ 490 (524)
T KOG0273|consen 485 KLVKSY 490 (524)
T ss_pred heeEee
Confidence 766543
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.4e-34 Score=273.40 Aligned_cols=285 Identities=18% Similarity=0.398 Sum_probs=242.5
Q ss_pred ccccceeeccC-CCeEEEEcC--CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee
Q 012679 141 DYYLNLLDWGS-SNVLAIALG--STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ 217 (458)
Q Consensus 141 d~~~~~~~~~~-~~~la~~~d--~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~ 217 (458)
+..+..+.|+. +.-+|.+.. |.+-||++.+... +...++|...+++++++|||+++|+|+.||.|+|||..++-+
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 44566677764 444444444 5999999998776 778889999999999999999999999999999999999999
Q ss_pred eEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcc-cccceEeEEEcCCCCEEEEEECCC-cEEE
Q 012679 218 LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRG-HNQEVCGLKWSASGQQLASGGNDN-LLHI 293 (458)
Q Consensus 218 ~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~sg~~dg-~i~i 293 (458)
+.++.. |.+.|+.+.| .++.+++.+.||+|+.||+..... .+++.. ..-...|++..|.|.++.+|+.|. .|.+
T Consensus 385 ~vTFte-Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 385 FVTFTE-HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV 462 (893)
T ss_pred EEEecc-CCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence 999998 9999999999 589999999999999999986654 444443 345678899999999999998876 6999
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-CeeEEEeCCCCeEEEEEcCCCC
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACLNSVDTGSQVCALLWNKNER 372 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~~~~~~~~~~~v~~~~~s~~~~ 372 (458)
|++.+++. +..+.+|.++|.+++|+|.+ .+|++++ .|++|++||+-.. ..+.++...+.+..+.|+|+|+
T Consensus 463 WS~qTGql------lDiLsGHEgPVs~l~f~~~~-~~LaS~S--WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 463 WSVQTGQL------LDILSGHEGPVSGLSFSPDG-SLLASGS--WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGK 533 (893)
T ss_pred EEeecCee------eehhcCCCCcceeeEEcccc-CeEEecc--ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCC
Confidence 99999987 88899999999999999975 5888877 9999999998654 4677888899999999999999
Q ss_pred eEEEEecCCCCcEEEEeCCCceeeEEEeC--------------------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSG--------------------HTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--------------------h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
++++++ .||+|.+||...+..+..+.+ .....+.+++|+||.+|++||....|++|++
T Consensus 534 elaVaT--ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 534 ELAVAT--LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred eEEEEE--ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 999976 899999999987766644332 1255889999999999999999999999999
Q ss_pred CCCCcccc
Q 012679 433 FGAPQVIS 440 (458)
Q Consensus 433 ~~~~~~~~ 440 (458)
.++..+++
T Consensus 612 ~~~vllkk 619 (893)
T KOG0291|consen 612 PEGVLLKK 619 (893)
T ss_pred chhheeee
Confidence 88765544
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=256.03 Aligned_cols=294 Identities=22% Similarity=0.362 Sum_probs=250.1
Q ss_pred CCCCCCCCCCceeeeCCCCCCccccceeeccCCC--eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCE
Q 012679 120 KPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSN--VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRH 197 (458)
Q Consensus 120 ~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~~~--~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~ 197 (458)
++..+.|-.-.+|+.. .-..+.+++..|.+ +++++.|++++|||+.+|++ ..++.+|...|..+++|+-..|
T Consensus 134 rPeWHapwKl~rVi~g----HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--kltltGhi~~vr~vavS~rHpY 207 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISG----HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--KLTLTGHIETVRGVAVSKRHPY 207 (460)
T ss_pred CccccCcceehhhhhh----ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--EEeecchhheeeeeeecccCce
Confidence 3334444444444442 23468888888844 88888999999999999998 7889999999999999999999
Q ss_pred EEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEE
Q 012679 198 IAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKW 275 (458)
Q Consensus 198 la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~ 275 (458)
|++++.|+.|+.||++..+.++.+.+ |-+.|.|++.++ ..|++|++|.++++||+++... +..+.+|..+|+.+.+
T Consensus 208 lFs~gedk~VKCwDLe~nkvIR~YhG-HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~ 285 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEYNKVIRHYHG-HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMC 285 (460)
T ss_pred EEEecCCCeeEEEechhhhhHHHhcc-ccceeEEEeccccceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEe
Confidence 99999999999999999999999998 999999999985 7899999999999999998875 7899999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE
Q 012679 276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS 355 (458)
Q Consensus 276 spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~ 355 (458)
.|-+..+++|+.|++|++||++.++. ...+..|...|.+++.+| ..+++|+++ -..|+-|++..|..+..
T Consensus 286 ~~~dpqvit~S~D~tvrlWDl~agkt------~~tlt~hkksvral~lhP-~e~~fASas---~dnik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 286 QPTDPQVITGSHDSTVRLWDLRAGKT------MITLTHHKKSVRALCLHP-KENLFASAS---PDNIKQWKLPEGEFLQN 355 (460)
T ss_pred ecCCCceEEecCCceEEEeeeccCce------eEeeecccceeeEEecCC-chhhhhccC---CccceeccCCccchhhc
Confidence 99899999999999999999999987 788889999999999999 478888875 44799999999998887
Q ss_pred EeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-----C---CCCcEEEEEEcCCCCEEEEEeCCCc
Q 012679 356 VDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-----G---HTSRVLFMAQSPDGCTVASAAADET 426 (458)
Q Consensus 356 ~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-----~---h~~~V~~l~~spdg~~l~s~s~Dg~ 426 (458)
+..+ .-+.++..+.|+-++ + |.++|.+.+||.+++-..+.+. | ....|++.+|...|..|+||..|.+
T Consensus 356 lsgh~~iintl~~nsD~v~~-~--G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKt 432 (460)
T KOG0285|consen 356 LSGHNAIINTLSVNSDGVLV-S--GGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKT 432 (460)
T ss_pred cccccceeeeeeeccCceEE-E--cCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcc
Confidence 7554 457778777776544 3 6789999999999876655442 1 2356899999999999999999999
Q ss_pred EEEEecCC
Q 012679 427 LRFWNVFG 434 (458)
Q Consensus 427 i~iW~~~~ 434 (458)
|++|.-.+
T Consensus 433 Ik~~keDe 440 (460)
T KOG0285|consen 433 IKMYKEDE 440 (460)
T ss_pred eEEEeccc
Confidence 99998643
No 18
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3e-33 Score=260.34 Aligned_cols=275 Identities=30% Similarity=0.504 Sum_probs=238.7
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
..+.++.|++ +.+++++.+|.|++|++.+++. ...+..|...+..+.|+|++++|++++.+|.|++||+.+++.+.
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~ 87 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR 87 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE
Confidence 3577889988 4466666799999999998775 56667888899999999999999999999999999999988888
Q ss_pred EecCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 220 TLRGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
.+.. |...+.++.|++ .++++++.+|.|.+||+++... ...+..|...|.++.|+|++.++++++.|+.|++||++
T Consensus 88 ~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 88 TLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred EEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 8876 888999999964 7788888899999999986553 56677899999999999999999998889999999998
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEE
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV-DTGSQVCALLWNKNERELLS 376 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~ 376 (458)
.... +..+..|...+.+++|+|++..+++++ .|+.|++||+.+++.+..+ .+...+.++.|++++..+++
T Consensus 166 ~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 166 TGKC------VATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred cccc------ceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence 7665 666778888999999999765555543 5999999999999988888 55668999999999777766
Q ss_pred EecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
+..++.|++|++.+++.+..+.+|...|.+++|+|++.+|++++.||.|++|+
T Consensus 237 --~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 237 --GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred --EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 44699999999999999999999999999999999999999999999999996
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.9e-35 Score=281.35 Aligned_cols=248 Identities=25% Similarity=0.447 Sum_probs=220.4
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-------------------------------eeEEecCCCc
Q 012679 178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-------------------------------QLRTLRGGHR 226 (458)
Q Consensus 178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-------------------------------~~~~~~~~~~ 226 (458)
++......++|..|++|+.+||.|..|..|++|.+...+ ..+++. +|.
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~-GH~ 451 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY-GHS 451 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee-cCC
Confidence 333335569999999999999999999999999876311 122333 499
Q ss_pred ccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCc
Q 012679 227 SRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304 (458)
Q Consensus 227 ~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~ 304 (458)
++|....|. .++|++++.|+++++|.+.+..+ +..+.||..+|+.+.|+|.|-+||+|+.|++-++|.......
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P--- 527 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP--- 527 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc---
Confidence 999999995 58999999999999999998776 567889999999999999999999999999999999887655
Q ss_pred ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCC
Q 012679 305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQN 383 (458)
Q Consensus 305 ~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~ 383 (458)
+..+.+|.+.|.|+.|+|+ ..++++|+ .|.++|+||+.+|..++.+.. .++|.+++|+|+|++|++ |..||
T Consensus 528 ---lRifaghlsDV~cv~FHPN-s~Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS--g~ed~ 599 (707)
T KOG0263|consen 528 ---LRIFAGHLSDVDCVSFHPN-SNYVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS--GDEDG 599 (707)
T ss_pred ---hhhhcccccccceEEECCc-ccccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee--cccCC
Confidence 7888999999999999995 67778876 999999999999999999965 578999999999999999 77999
Q ss_pred cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 384 ~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
.|.+||+.++..+..+.+|++.|.+|.||.||..||+||.|.+|++||+......
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999999999999999999999999999999999999999999999765544
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=242.18 Aligned_cols=255 Identities=18% Similarity=0.348 Sum_probs=230.6
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV 253 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 253 (458)
...+++|.+.|.++.|++|.++|++++.||.+.|||.-+...++.+.. ....|...+| +++++++|+.|....||++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 467899999999999999999999999999999999999998888887 7889999999 5799999999999999999
Q ss_pred cCC--C---eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679 254 RVR--D---HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS 328 (458)
Q Consensus 254 ~~~--~---~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 328 (458)
.+. + ...+.+.+|.+.+.++.|-+ ..+|++++.|.++.+||++++.. +..+.+|.+.|.+++++|...
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~------~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQ------TQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceE------EEEecCCcccEEEEecCCCCC
Confidence 865 2 34567889999999999976 66799999999999999999987 889999999999999999778
Q ss_pred cEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC--CCc
Q 012679 329 NLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH--TSR 405 (458)
Q Consensus 329 ~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h--~~~ 405 (458)
+.+++|+ -|+..++||++.+.+++++.. .+.|+++.|.|+|.-+++ |.+|++.++||++..+.+..+... ..+
T Consensus 200 ntFvSg~--cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat--GSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 200 NTFVSGG--CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT--GSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred CeEEecc--cccceeeeeccCcceeEeecccccccceEEEccCCCeeee--cCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 8999987 999999999999999999975 578999999999999998 889999999999999999888633 257
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 406 VLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 406 V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
|++++||..|++|.+|..|.++.+||.-.++.+....
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeeccccceEEEee
Confidence 9999999999999999999999999998777665544
No 21
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=245.21 Aligned_cols=274 Identities=20% Similarity=0.386 Sum_probs=238.1
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.++.+.|+| .-++++|.|..|.+|++. +.++....+++|.++|..+.|.+|++.|++++.|.+|+.||+++|+.++.
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk 127 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK 127 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEecc-ccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh
Confidence 355566666 458889999999999964 34456788899999999999999999999999999999999999999999
Q ss_pred ecCCCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 221 LRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 221 ~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
++. |..-|+++.. +..++.+|+.||++++||++.... ++++ ....+++++.|..++..+.+|+-|+.|++||++
T Consensus 128 ~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r 204 (338)
T KOG0265|consen 128 HKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR 204 (338)
T ss_pred hcc-ccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhcc-ccceeEEEEEecccccceeeccccCceeeeccc
Confidence 998 9999999987 357889999999999999997664 3333 236689999999999999999999999999999
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC----CeeEEEeCC-----CCeEEEEEc
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG----ACLNSVDTG-----SQVCALLWN 368 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~----~~~~~~~~~-----~~v~~~~~s 368 (458)
.... ++.+.+|...|+.+..+|++..++.-+ .|.++++||++-. .++..+..+ .....+.|+
T Consensus 205 ~~d~------~~~lsGh~DtIt~lsls~~gs~llsns---Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 205 KNDG------LYTLSGHADTITGLSLSRYGSFLLSNS---MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred cCcc------eEEeecccCceeeEEeccCCCcccccc---ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence 8887 899999999999999999888777543 8999999999853 345555432 235678999
Q ss_pred CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
|++..+-+ |+.|..+++||..+...+..+.||.+.|.+++|+|...+|.+++.|.+|.+=.
T Consensus 276 p~~~~i~a--gs~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 276 PNGTKITA--GSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCCcccc--ccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999988 78999999999999999999999999999999999999999999999998743
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.5e-35 Score=263.32 Aligned_cols=246 Identities=24% Similarity=0.484 Sum_probs=214.7
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeE
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIV 260 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 260 (458)
...|..|.|.|+|+.|++|+..|.+.+|+..+-.....+.. |..+|.++.| ++..+++|+.+|.|++|+..-.. +
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQa-HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--V 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQA-HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--V 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhh-hcccceeEEEccCCCEEEEcCCCceEEecccchhh--h
Confidence 45799999999999999999999999999755443333444 9999999999 58999999999999999986443 4
Q ss_pred EEEccc-ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679 261 ETYRGH-NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339 (458)
Q Consensus 261 ~~~~~h-~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d 339 (458)
+.+.+| ...|.+++|+|++..|++++.||+|+|||...... ...+.+|...|++++|+| ...++++++ .|
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke------e~vL~GHgwdVksvdWHP-~kgLiasgs--kD 243 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE------ERVLRGHGWDVKSVDWHP-TKGLIASGS--KD 243 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch------hheeccCCCCcceeccCC-ccceeEEcc--CC
Confidence 555555 48999999999999999999999999999998877 566789999999999999 578888877 99
Q ss_pred CeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-CCCE
Q 012679 340 RCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCT 417 (458)
Q Consensus 340 ~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 417 (458)
..|++||.++|.|+.++.. ...|..+.|++++++|++ ++.|..++++|+++++.+.++++|...|+++.|+| ...+
T Consensus 244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt--~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLT--GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEE--ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence 9999999999999998865 566999999999999999 66999999999999999999999999999999999 5668
Q ss_pred EEEEeCCCcEEEEecCCCCcccccC
Q 012679 418 VASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 418 l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
|.+|+.||.|..|.+....++....
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p~~~i~ 346 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEPLGEIP 346 (464)
T ss_pred eeeccCCCceEEEeccccccccCCC
Confidence 8999999999999998555544433
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=234.14 Aligned_cols=276 Identities=21% Similarity=0.368 Sum_probs=222.1
Q ss_pred cceeeccCC---CeEEEEcCCEEEEEECCCCC-eeeEEEe-cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc--e
Q 012679 144 LNLLDWGSS---NVLAIALGSTVYLWDASDGT-TSELVTV-DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN--R 216 (458)
Q Consensus 144 ~~~~~~~~~---~~la~~~d~~v~iwd~~~~~-~~~~~~~-~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~--~ 216 (458)
+-.++|++. .+++++.|..|++|+...+. ......+ .+|+..|.+++|+|.|++||+|+.|+++.||.-..+ +
T Consensus 17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efe 96 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFE 96 (312)
T ss_pred EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCcee
Confidence 445889986 47888889999999988533 3222222 478999999999999999999999999999976543 6
Q ss_pred eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 217 QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 217 ~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
++.++.+ |...|.|++| +|++|+++++|..|.||.+.... .+...++.|.+.|..+.|+|...+|++++.|++|+
T Consensus 97 cv~~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 97 CVATLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred EEeeeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence 7788887 9999999999 58999999999999999998443 45778999999999999999999999999999999
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCC
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER 372 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~ 372 (458)
+|+-.... ...+.+++.+|...|.+++|++.|. -|++++ .|++++||-..+.- ...+..++..+.|. ..
T Consensus 176 ~~~~~~dd---dW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~s--dD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~ 244 (312)
T KOG0645|consen 176 VYRDEDDD---DWECVQTLDGHENTVWSLAFDNIGS-RLVSCS--DDGTVSIWRLYTDL---SGMHSRALYDVPWD--NG 244 (312)
T ss_pred EEeecCCC---CeeEEEEecCccceEEEEEecCCCc-eEEEec--CCcceEeeeeccCc---chhcccceEeeeec--cc
Confidence 99876422 2355889999999999999999764 555655 99999999866321 12245678889998 44
Q ss_pred eEEEEecCCCCcEEEEeCCCc------eeeE-EEeCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEecC
Q 012679 373 ELLSSHGFTQNQLTLWKYPSM------VKMA-ELSGHTSRVLFMAQSPD-GCTVASAAADETLRFWNVF 433 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~~------~~~~-~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iW~~~ 433 (458)
.|++ +..|+.|++|.-... +.+. .-..|...|++++|.|. ...|++|+.||.|++|.+.
T Consensus 245 ~IaS--~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 245 VIAS--GGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEe--ccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 5555 447999999976532 2222 23468899999999994 6789999999999999874
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.8e-32 Score=250.99 Aligned_cols=297 Identities=18% Similarity=0.331 Sum_probs=242.3
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEec---CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVD---DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR 216 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~---~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~ 216 (458)
-+++++.++| ..+++++.||.|++||-.+|+. +..+. +|.+.|.+++|+||++.+++++.|.+++|||+.+.+
T Consensus 191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~--vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK--VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred cceeeEEECCCCCeEEEecCCccEEEEcCCCccE--EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 3689999988 5699999999999999999987 66666 899999999999999999999999999999999999
Q ss_pred eeEEecCCCc--ccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE
Q 012679 217 QLRTLRGGHR--SRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294 (458)
Q Consensus 217 ~~~~~~~~~~--~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw 294 (458)
+++++..+.. ..-..+-|.+..|++.+.+|.|.+++..... +...+.+|...|+++..+||+++|++|+.||.|.-|
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 9999885333 3344455678899999999999999998877 688999999999999999999999999999999999
Q ss_pred eCCCCCCCCcc------------------------------------------------ee-------------------
Q 012679 295 DRSMASSNSVT------------------------------------------------QW------------------- 307 (458)
Q Consensus 295 d~~~~~~~~~~------------------------------------------------~~------------------- 307 (458)
|...+...... ++
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence 98765432110 00
Q ss_pred eeeeccc--------ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe---eEEEeCCCCeEEEEEcCCCCeEEE
Q 012679 308 LHRLEEH--------TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---LNSVDTGSQVCALLWNKNERELLS 376 (458)
Q Consensus 308 ~~~~~~h--------~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~ 376 (458)
+..+..+ .....+++++|+ ...++.|+ .|++|++|.+..+.. ...+++...++.++|+|++.+|++
T Consensus 428 iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG--~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~ 504 (603)
T KOG0318|consen 428 IVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGG--QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA 504 (603)
T ss_pred EEEEecCCcceeeccccccceEEEcCC-CCEEEEec--ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE
Confidence 0000101 112457788885 45566666 999999999987653 345677899999999999999999
Q ss_pred EecCCCCcEEEEeCCCceeeE-EEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCCC
Q 012679 377 SHGFTQNQLTLWKYPSMVKMA-ELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKP 446 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~ 446 (458)
|...+.+.+||..+.+... ...-|+.+|.+++|+|+..++|||+.|-.|.||++..+.........++
T Consensus 505 --~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~ 573 (603)
T KOG0318|consen 505 --GDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHL 573 (603)
T ss_pred --eccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccc
Confidence 6689999999999877643 3344999999999999999999999999999999988776654444443
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-32 Score=236.79 Aligned_cols=254 Identities=16% Similarity=0.272 Sum_probs=218.1
Q ss_pred eEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCC-----CceeeEEecCCCcccEEEEEe--CCCeEEEEeCCC
Q 012679 175 ELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDST-----ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDG 246 (458)
Q Consensus 175 ~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~-----~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg 246 (458)
...++++|.+.|+.++..+. ...+++++.|.++.+|++. .|..++.+.+ |...|..+.. ++++.++++.|+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEeccccc
Confidence 35678999999999999885 5688999999999999864 4667888888 9999998887 689999999999
Q ss_pred cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEec
Q 012679 247 LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWC 324 (458)
Q Consensus 247 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~ 324 (458)
++++||+.+++ ....+.+|...|.+++|++|.+.+++|+.|++|++|+...... .++..+ ...|.|+.|+
T Consensus 86 ~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-------~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 86 TLRLWDLATGE-STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-------YTIHEDSHREWVSCVRFS 157 (315)
T ss_pred eEEEEEecCCc-EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-------EEEecCCCcCcEEEEEEc
Confidence 99999999885 4788999999999999999999999999999999999876532 333333 7889999999
Q ss_pred CCC-CcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679 325 PFQ-SNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH 402 (458)
Q Consensus 325 p~~-~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h 402 (458)
|.. +.++++++ .|+++++||+++.+....+.. .+.++.+.++|||..+++ |..||.+.+||++.++.+..+. |
T Consensus 158 P~~~~p~Ivs~s--~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas--Ggkdg~~~LwdL~~~k~lysl~-a 232 (315)
T KOG0279|consen 158 PNESNPIIVSAS--WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS--GGKDGEAMLWDLNEGKNLYSLE-A 232 (315)
T ss_pred CCCCCcEEEEcc--CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec--CCCCceEEEEEccCCceeEecc-C
Confidence 975 56777766 999999999999988877754 567999999999999988 7799999999999999988774 8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCC
Q 012679 403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA 443 (458)
Q Consensus 403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~ 443 (458)
...|.+++|+|+.-.|+.+ .+..|+|||+..+..+.....
T Consensus 233 ~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 233 FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccc
Confidence 8899999999998766644 566799999998877766543
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.4e-33 Score=273.92 Aligned_cols=281 Identities=24% Similarity=0.448 Sum_probs=240.0
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC-CCceee
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS-TANRQL 218 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~-~~~~~~ 218 (458)
..+.++++++ ..+++++.++.+++|+..+.+...+..+.+|...|.+++|+|+|+++++|+.|++|+|||+ ..+..+
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence 3455677765 5577777999999999976662235666899999999999999999999999999999999 556888
Q ss_pred EEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679 219 RTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~ 296 (458)
+++.+ |...|++++|+ ++++++|+.|++|++||++++. ++..+.+|.+.|++++|++++++|++++.|+.|+|||+
T Consensus 240 ~~l~g-H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 240 KTLKG-HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred EEecC-CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 99996 99999999995 6899999999999999999855 58999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeeeeecccccc--eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC----CeEEEEEcCC
Q 012679 297 SMASSNSVTQWLHRLEEHTSA--VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS----QVCALLWNKN 370 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~----~v~~~~~s~~ 370 (458)
.++... +...+..+... +.+++|+|++.+++... .|+.+++||+..+.++..+..+. .+.+...++.
T Consensus 318 ~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 318 ETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred CCCcee----eeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 988731 13455555544 99999999877776644 89999999999999888876532 2344455778
Q ss_pred CCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-CCcEEEEEEcCCCCEEEEEe--CCCcEEEEecC
Q 012679 371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-TSRVLFMAQSPDGCTVASAA--ADETLRFWNVF 433 (458)
Q Consensus 371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s--~Dg~i~iW~~~ 433 (458)
+..+++ |..|+.|.+|+..++..+..+.+| ...+..+.++|...++++++ .|+.+++|...
T Consensus 391 ~~~i~s--g~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 GKLIYS--GSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCeEEE--EeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 888888 779999999999999999999999 88999999999999999998 79999999754
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-34 Score=252.77 Aligned_cols=255 Identities=20% Similarity=0.341 Sum_probs=231.0
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEc
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDV 253 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~ 253 (458)
...+.+|..+|+.+-|+|+-..+++++.|++|++||..+++..+.+++ |...|..++|+ |.+|++++.|-.+.+||.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG-Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG-HTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc-cccceeEEEEecCccEEEecCCccchhheeH
Confidence 556678999999999999999999999999999999999999999998 99999999995 799999999999999999
Q ss_pred cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333 (458)
Q Consensus 254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s 333 (458)
.+....++.+.+|...|.++.|-|.|.++++++.|.+|+.|++.++-+ +.++.+|...|..++.+.| ..++|+
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c------v~t~~~h~ewvr~v~v~~D-Gti~As 252 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC------VKTFPGHSEWVRMVRVNQD-GTIIAS 252 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee------EEeccCchHhEEEEEecCC-eeEEEe
Confidence 876666788889999999999999999999999999999999999988 8999999999999999985 678888
Q ss_pred eCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCC---------------CeEEEEecCCCCcEEEEeCCCceeeE
Q 012679 334 GGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNE---------------RELLSSHGFTQNQLTLWKYPSMVKMA 397 (458)
Q Consensus 334 ~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~---------------~~l~~~~g~~d~~i~iwd~~~~~~~~ 397 (458)
++ .|.+|++|-+.++++...+. +..+|-+++|.|.. .++.+ |..|++|++||+.++.++.
T Consensus 253 ~s--~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s--~SrDktIk~wdv~tg~cL~ 328 (406)
T KOG0295|consen 253 CS--NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS--GSRDKTIKIWDVSTGMCLF 328 (406)
T ss_pred cC--CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe--ecccceEEEEeccCCeEEE
Confidence 77 99999999999998877664 45678888887642 34444 7789999999999999999
Q ss_pred EEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 398 ELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 398 ~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
++.+|...|..++|+|.|+||+++..|++|++||+.+.+..+...
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 999999999999999999999999999999999999988877655
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-32 Score=261.91 Aligned_cols=277 Identities=18% Similarity=0.357 Sum_probs=237.6
Q ss_pred CCCeEEEEcCCEEEEEECCC-----------------------C-C------eee--EEEecCCCCCEEEEEEcCCCCEE
Q 012679 151 SSNVLAIALGSTVYLWDASD-----------------------G-T------TSE--LVTVDDENGPVTSVNWAPDGRHI 198 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~-----------------------~-~------~~~--~~~~~~h~~~V~~v~~s~~g~~l 198 (458)
...+++++.||.+.+|.... + + ... ..-+......|++.+|++.-+.|
T Consensus 201 ~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~l 280 (893)
T KOG0291|consen 201 SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLL 280 (893)
T ss_pred cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEE
Confidence 35699999999999998761 1 1 000 11122334789999999999999
Q ss_pred EEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCC-CcEEEEEccCCCeeEEEEcccccceEeEEE
Q 012679 199 AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMD-GLIINNDVRVRDHIVETYRGHNQEVCGLKW 275 (458)
Q Consensus 199 a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d-g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~ 275 (458)
|+|..+|...+|++.....++.+.. ...+|..++|| |+.|+.|+.. |.+.||+.+.... +...++|...++++++
T Consensus 281 vvgFssG~f~LyelP~f~lih~LSi-s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-VlKQQgH~~~i~~l~Y 358 (893)
T KOG0291|consen 281 VVGFSSGEFGLYELPDFNLIHSLSI-SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-VLKQQGHSDRITSLAY 358 (893)
T ss_pred EEEecCCeeEEEecCCceEEEEeec-ccceeeEEEecccCCEEEEcCCccceEEEEEeeccce-eeeccccccceeeEEE
Confidence 9999999999999999999999987 77899999997 8999998765 8999999997665 6677899999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE
Q 012679 276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS 355 (458)
Q Consensus 276 spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~ 355 (458)
+|||+++|+|+.||.|+|||...+-+ ..++..|++.|+++.|+..+..++.+ + .||+|+.||+......++
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~SgfC------~vTFteHts~Vt~v~f~~~g~~llss-S--LDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQSGFC------FVTFTEHTSGVTAVQFTARGNVLLSS-S--LDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred CCCCcEEEeccCCCcEEEEeccCceE------EEEeccCCCceEEEEEEecCCEEEEe-e--cCCeEEeeeecccceeee
Confidence 99999999999999999999998877 89999999999999999976555554 4 899999999999999999
Q ss_pred EeCCCC--eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 356 VDTGSQ--VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 356 ~~~~~~--v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
+..+.+ ..+++..|.|..++++ +.+.-.|.||++.+|+.+..+.||.++|.+++|+|+|..|++++.|.+||+||++
T Consensus 430 ft~P~p~QfscvavD~sGelV~AG-~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 430 FTSPEPIQFSCVAVDPSGELVCAG-AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred ecCCCceeeeEEEEcCCCCEEEee-ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 987654 5677888888877773 3344579999999999999999999999999999999999999999999999999
Q ss_pred CCCccc
Q 012679 434 GAPQVI 439 (458)
Q Consensus 434 ~~~~~~ 439 (458)
......
T Consensus 509 ~s~~~v 514 (893)
T KOG0291|consen 509 SSSGTV 514 (893)
T ss_pred ccCcee
Confidence 874443
No 29
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-33 Score=238.33 Aligned_cols=269 Identities=19% Similarity=0.332 Sum_probs=244.7
Q ss_pred CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEE
Q 012679 153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSL 232 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 232 (458)
.+++++.|+.-.+-+-++|.+ +-++.+|.+.|.+.....+....|+++.|=+-+|||.-+|..+..+. |..-|.++
T Consensus 31 flisa~kd~~pmlr~g~tgdw--igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~ 106 (334)
T KOG0278|consen 31 FLISASKDGKPMLRNGDTGDW--IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAV 106 (334)
T ss_pred EEEEeccCCCchhccCCCCCc--EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeE
Confidence 378888899999999999999 88999999999999999999999999999999999999999999998 89999999
Q ss_pred Ee--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee
Q 012679 233 AW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR 310 (458)
Q Consensus 233 ~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 310 (458)
+| +.++|++|+.+..++|||++........+.+|.+.|..+.|....+.|++.+.|++|++||.+++.. ++.
T Consensus 107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~------v~s 180 (334)
T KOG0278|consen 107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE------VQS 180 (334)
T ss_pred EecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE------EEE
Confidence 99 4689999999999999999988877888999999999999999999999999999999999999987 666
Q ss_pred ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~ 390 (458)
+. ....|+++..++++..+..+ ..+.|.+||..+...++.++.+..|.+...+|+...+++ |..|..++.||+
T Consensus 181 L~-~~s~VtSlEvs~dG~ilTia----~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVa--Gged~~~~kfDy 253 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVSQDGRILTIA----YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVA--GGEDFKVYKFDY 253 (334)
T ss_pred Ee-cCCCCcceeeccCCCEEEEe----cCceeEEeccccccceeeccCccccccccccCCCceEEe--cCcceEEEEEec
Confidence 54 46789999999986655544 567899999999999999999999999999999977776 779999999999
Q ss_pred CCceeeEEE-eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 391 ~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
.+++.+..+ ++|.++|.|+.|+|||...++|+.||+|++|....++..
T Consensus 254 ~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 254 NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 999999986 899999999999999999999999999999998765543
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.7e-33 Score=244.73 Aligned_cols=250 Identities=24% Similarity=0.425 Sum_probs=225.8
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEc
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDV 253 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~ 253 (458)
...+.+|.+.|.|+++.|.+.+|++|+.|++++|||+.++++..++.+ |...|..++++ ..++++++.|+.|+.||+
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 345679999999999999999999999999999999999999999998 99999999996 479999999999999999
Q ss_pred cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333 (458)
Q Consensus 254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s 333 (458)
+..+ .++.+.+|-+.|.|++.+|.-..|++|+.|.+++|||+++... ++.+.+|..+|..+.+.|..+.++ +
T Consensus 223 e~nk-vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~------V~~l~GH~~~V~~V~~~~~dpqvi-t 294 (460)
T KOG0285|consen 223 EYNK-VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS------VHVLSGHTNPVASVMCQPTDPQVI-T 294 (460)
T ss_pred hhhh-hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce------EEEecCCCCcceeEEeecCCCceE-E
Confidence 9765 4788999999999999999999999999999999999999877 899999999999999999766665 4
Q ss_pred eCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEc
Q 012679 334 GGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS 412 (458)
Q Consensus 334 ~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~s 412 (458)
|+ .|++|++||++.|+...++.+ ...+.+++.+|....+++++ ...|+-|+++.+..+..+.+|..-|++++..
T Consensus 295 ~S--~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 295 GS--HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVN 369 (460)
T ss_pred ec--CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC---CccceeccCCccchhhccccccceeeeeeec
Confidence 44 999999999999998877755 56799999999998888753 5679999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 413 PDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 413 pdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
.|| ++++|+..|.+.+||...+..-..
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCccccc
Confidence 887 778899999999999988765444
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-32 Score=262.90 Aligned_cols=267 Identities=23% Similarity=0.350 Sum_probs=232.3
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce----eeEEecCCCcc
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR----QLRTLRGGHRS 227 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~----~~~~~~~~~~~ 227 (458)
+.++.++..+.+++|+..+..+. -+.+|.+.|.++....+|.+|++|+.|.++++|.++.+. ++....+ |.+
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~ 412 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTN 412 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc-ccc
Confidence 44566666789999998887753 678999999999966688999999999999999874432 3334444 999
Q ss_pred cEEEEEeC---CCeEEEEeCCCcEEEEEccCCC----eeEE----EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679 228 RVGSLAWN---NHILTTGGMDGLIINNDVRVRD----HIVE----TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 228 ~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~----~~~~----~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~ 296 (458)
.|.+++.+ ..+|++++.|+++++|++.... .+.. +...|...|++++++|+.+++|+||.|.+.+||++
T Consensus 413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL 492 (775)
T ss_pred ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence 99999994 4899999999999999997621 1111 33579999999999999999999999999999999
Q ss_pred CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEE
Q 012679 297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELL 375 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~ 375 (458)
..... +..+.+|...|.++.|+|. ..++++++ .|++|++|.+.+..|++++. +...|....|-.+++.|+
T Consensus 493 e~~~l------~~vLsGH~RGvw~V~Fs~~-dq~laT~S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qli 563 (775)
T KOG0319|consen 493 EQLRL------LGVLSGHTRGVWCVSFSKN-DQLLATCS--GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLI 563 (775)
T ss_pred cCceE------EEEeeCCccceEEEEeccc-cceeEecc--CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEE
Confidence 96555 8899999999999999994 77888887 89999999999999999998 567899999999999999
Q ss_pred EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
++ ..||.|++|++.+.+++.++.+|.++|++++.+|++.+++||+.||.|.+|.=.
T Consensus 564 S~--~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 564 SA--GADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred ec--cCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 94 489999999999999999999999999999999999999999999999999643
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.3e-33 Score=257.50 Aligned_cols=274 Identities=18% Similarity=0.352 Sum_probs=232.3
Q ss_pred ccceeeccC---CCeEEEEcCCEEEEEECCC-CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679 143 YLNLLDWGS---SNVLAIALGSTVYLWDASD-GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 143 ~~~~~~~~~---~~~la~~~d~~v~iwd~~~-~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~ 218 (458)
-++++.|-+ ..+++++.|+.|+||++-. +.+ +.++.+|..+|.+++|+++|..+.+++.|+.|++||+++|+++
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~--lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~ 293 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC--LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL 293 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCcce--ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE
Confidence 466777766 4588899999999999876 554 8899999999999999999999999999999999999999999
Q ss_pred EEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679 219 RTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd 295 (458)
..+. ....+.|+.|+ .+.+++|+.|+.|+.||+++++ +++.+..|-+.|..+.|-++|+++++.+.|+.++||+
T Consensus 294 ~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe 370 (503)
T KOG0282|consen 294 SRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWE 370 (503)
T ss_pred EEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEE
Confidence 9998 56678888884 4899999999999999999887 5778888999999999999999999999999999999
Q ss_pred CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE---EE---eCCCCeEEEEEcC
Q 012679 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN---SV---DTGSQVCALLWNK 369 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~---~~---~~~~~v~~~~~s~ 369 (458)
.+.+.... .....+.-...++..+|+++.+++- + .|+.|.++.+...-... .+ ...+--+.+.|||
T Consensus 371 ~~~~v~ik-----~i~~~~~hsmP~~~~~P~~~~~~aQ-s--~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 371 NRIPVPIK-----NIADPEMHTMPCLTLHPNGKWFAAQ-S--MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred cCCCccch-----hhcchhhccCcceecCCCCCeehhh-c--cCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 98876521 1122334456789999977666553 3 89999999865432221 12 2345678999999
Q ss_pred CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 012679 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD-GCTVASAAADETLRFWN 431 (458)
Q Consensus 370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iW~ 431 (458)
||.+|++ |..+|.+.+||.++.+.+..+++|...+..+.|+|. ...+||++.||.|++|+
T Consensus 443 DG~~l~S--GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCS--GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEe--ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999 889999999999999999999999999999999994 46799999999999996
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5e-32 Score=262.63 Aligned_cols=237 Identities=21% Similarity=0.389 Sum_probs=207.0
Q ss_pred ccceeeccC-CC-eEEEEcCCEEEEEECCCCCe-----------------------------eeEEEecCCCCCEEEEEE
Q 012679 143 YLNLLDWGS-SN-VLAIALGSTVYLWDASDGTT-----------------------------SELVTVDDENGPVTSVNW 191 (458)
Q Consensus 143 ~~~~~~~~~-~~-~la~~~d~~v~iwd~~~~~~-----------------------------~~~~~~~~h~~~V~~v~~ 191 (458)
.++|.++++ .. ++.+-.|..|++|.+...+. ....++-+|.++|..+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 477888876 33 44555688999999873110 112346799999999999
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc
Q 012679 192 APDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE 269 (458)
Q Consensus 192 s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~ 269 (458)
+|+.++|++++.|++|++|.+.+..++..+.+ |..+|+++.|+ |.++++++.|++.++|...... +.+.+.+|.+.
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~G-H~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsD 537 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-HLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSD 537 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEecC-CCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcccccc
Confidence 99999999999999999999999999999996 99999999995 7899999999999999988644 57889999999
Q ss_pred eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
|.|+.|+|+.+|+|+||.|.+|++||+.++.. +..|.+|.++|.+++|+|+ +..|++|+ .|+.|.+||+.+
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~------VRiF~GH~~~V~al~~Sp~-Gr~LaSg~--ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS------VRIFTGHKGPVTALAFSPC-GRYLASGD--EDGLIKIWDLAN 608 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCcE------EEEecCCCCceEEEEEcCC-CceEeecc--cCCcEEEEEcCC
Confidence 99999999999999999999999999999988 8889999999999999996 55667766 999999999999
Q ss_pred CCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679 350 GACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 350 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
+..+..+. +.+.|+++.|+.+|..|++ |+.|++|++||+..
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLas--gg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLAS--GGADNSVRLWDLTK 650 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEe--cCCCCeEEEEEchh
Confidence 99887774 4677999999999999999 66899999999854
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-31 Score=264.35 Aligned_cols=251 Identities=25% Similarity=0.464 Sum_probs=219.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC
Q 012679 182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD 257 (458)
Q Consensus 182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 257 (458)
+...|+++.|+++|+++++++.++.+++|+....+ ..+.+.+ |...|.+++| ++.++++|+.|++|++||+....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~-h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG-HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccc-cccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence 36789999999999999999999999999997777 6677755 9999999999 57899999999999999997666
Q ss_pred eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679 258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~ 337 (458)
..++++.+|...|++++|+|+++++++|+.|++|+|||+++++. +..+.+|...|.+++|++++..++ +++
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~------~~~l~~hs~~is~~~f~~d~~~l~-s~s-- 307 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC------VRKLKGHSDGISGLAFSPDGNLLV-SAS-- 307 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE------EEeeeccCCceEEEEECCCCCEEE-EcC--
Confidence 77899999999999999999999999999999999999999766 889999999999999999755554 445
Q ss_pred CCCeEEEEECCCCC--eeEEEeCC--C-CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc---EEEE
Q 012679 338 GDRCIKFWNTHTGA--CLNSVDTG--S-QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR---VLFM 409 (458)
Q Consensus 338 ~d~~i~lwd~~~~~--~~~~~~~~--~-~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~---V~~l 409 (458)
.|+.|++||+.++. ++..+... . .++.++|+|++.++++ +..|+.+++||+..+..+..+.+|... +.+.
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~--~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS--ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE--ecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence 89999999999999 55555432 2 5899999999999999 558999999999999999999999875 3444
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679 410 AQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444 (458)
Q Consensus 410 ~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~ 444 (458)
..++.+.++++|+.|+.|++|++.+...+......
T Consensus 386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 386 TLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred cccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 56789999999999999999999986665554433
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-32 Score=226.75 Aligned_cols=254 Identities=21% Similarity=0.316 Sum_probs=224.4
Q ss_pred eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEE
Q 012679 175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINND 252 (458)
Q Consensus 175 ~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd 252 (458)
++..+..+.++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+ |...|..++. ++..+++|+.|..+.+||
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeeccccccccccccCCCCceEEEEE
Confidence 3566788999999999999999999999999999999999999999998 9999998776 689999999999999999
Q ss_pred ccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679 253 VRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332 (458)
Q Consensus 253 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~ 332 (458)
+.+++. .+.+.+|.++|+.+.|+.+...+++|+.|..+++||.++... +|++.+......|.++.... ..++
T Consensus 88 V~TGkv-~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~----ePiQildea~D~V~Si~v~~---heIv 159 (307)
T KOG0316|consen 88 VNTGKV-DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF----EPIQILDEAKDGVSSIDVAE---HEIV 159 (307)
T ss_pred cccCee-eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC----CccchhhhhcCceeEEEecc---cEEE
Confidence 998875 789999999999999999999999999999999999998765 45788888888999998864 5666
Q ss_pred EeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcE--EEEE
Q 012679 333 TGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRV--LFMA 410 (458)
Q Consensus 333 s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V--~~l~ 410 (458)
+|+ .||+++.||++.|...... .+.+|++++|+++++..++ |..++++++.|-.+++.+..++||...- ...+
T Consensus 160 aGS--~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La--~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 160 AGS--VDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLA--SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred eec--cCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEE--eeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 655 9999999999999865443 5789999999999999999 5589999999999999999999998653 3456
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 411 QSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 411 ~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
++.....+++|++||.|.+||+-+...+.+..
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccceeeeeec
Confidence 66677789999999999999999887776544
No 36
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-32 Score=243.20 Aligned_cols=299 Identities=20% Similarity=0.276 Sum_probs=243.5
Q ss_pred CCCCCCCCCceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECC-CCCeeeEEEecCCCCCEEEEEEcCCCCEEE
Q 012679 121 PRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDAS-DGTTSELVTVDDENGPVTSVNWAPDGRHIA 199 (458)
Q Consensus 121 ~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~-~~~~~~~~~~~~h~~~V~~v~~s~~g~~la 199 (458)
.++.+|.....++.. ..+...+..++-++..+++++.|.+..+|.+. ...+....++.+|..+|..+.||||.++|+
T Consensus 208 ~~~qip~qt~qil~~--htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLl 285 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQD--HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLL 285 (519)
T ss_pred CcccCCchhhhhHhh--CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEE
Confidence 346677666666664 44555555555556779999999999999865 344556788999999999999999999999
Q ss_pred EEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEccc-ccceEeEEEc
Q 012679 200 IGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGH-NQEVCGLKWS 276 (458)
Q Consensus 200 ~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~l~~s 276 (458)
+++.+..+.+||+.+|.....+..++...+.+.+| ++..+++|+.|+.|..||+.... ....++- ...|.+++.+
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred ecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEc
Confidence 99999999999999999999998767889999999 68899999999999999997543 3333332 3569999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE
Q 012679 277 ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV 356 (458)
Q Consensus 277 pd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~ 356 (458)
+||+++++.+.|..|++++...... .. +.....+|++++.+.++...++.- .+..|++||+...+.+..+
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~d------r~-lise~~~its~~iS~d~k~~LvnL---~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVD------RG-LISEEQPITSFSISKDGKLALVNL---QDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhh------hc-cccccCceeEEEEcCCCcEEEEEc---ccCeeEEeecchhhHHHHh
Confidence 9999999999999999999877654 22 223456899999999888777765 7999999999988877777
Q ss_pred eCCC---CeEEEEEcCCC-CeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 012679 357 DTGS---QVCALLWNKNE-RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWN 431 (458)
Q Consensus 357 ~~~~---~v~~~~~s~~~-~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~ 431 (458)
..+. -+..-||-... .++++ |.+|++|+||+..+++++.++.||...|++++|+| +-.++|+||.||+||||.
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaS--GSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIAS--GSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred hcccccceEEEeccCCCCcceEEe--cCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 5543 35555666544 44444 88999999999999999999999999999999999 567899999999999998
Q ss_pred cCCC
Q 012679 432 VFGA 435 (458)
Q Consensus 432 ~~~~ 435 (458)
....
T Consensus 512 ~~~~ 515 (519)
T KOG0293|consen 512 PSDN 515 (519)
T ss_pred CCcc
Confidence 7543
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-31 Score=251.67 Aligned_cols=277 Identities=17% Similarity=0.301 Sum_probs=243.9
Q ss_pred cceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 144 LNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 144 ~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
+.+++++|. -++++-..|.|.|||.++... +..+.-...+|.+..|-...+++++|+.|..|+||+..+++.+..|
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWnyetqtm--VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNYETQTM--VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEeccccee--eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe
Confidence 556788884 478888899999999998877 4455555778999999999999999999999999999999999999
Q ss_pred cCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 012679 222 RGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 222 ~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~ 298 (458)
.. |..-|.|++.++ .++++++.|-+|++||.+..-.+.+++.+|...|.+++|+| |.+.+|+++-|++|+||.+.+
T Consensus 94 eA-H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs 172 (794)
T KOG0276|consen 94 EA-HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS 172 (794)
T ss_pred ec-cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC
Confidence 98 999999999986 68999999999999999988888899999999999999999 778999999999999999988
Q ss_pred CCCCCcceeeeeecccccceeEEEecCCC-CcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEE
Q 012679 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQ-SNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLS 376 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~ 376 (458)
..+ ..++++|...|.++.+-+-+ .-.+++|+ .|.+|++||.++..|+++++. ...|..++|+|.-..+++
T Consensus 173 ~~~------nfTl~gHekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 173 PHP------NFTLEGHEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred CCC------ceeeeccccCcceEEeccCCCcceEEecC--CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence 877 78899999999999998844 23666665 999999999999999999985 467999999999999988
Q ss_pred EecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
|..||+++||+..+.+...++.-.-++|+|++-.+.+..++.|...|.|. .++..
T Consensus 245 --gsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgr 299 (794)
T KOG0276|consen 245 --GSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGR 299 (794)
T ss_pred --ecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccC
Confidence 77999999999999999888887889999999999888888776666553 34433
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.1e-31 Score=262.26 Aligned_cols=281 Identities=22% Similarity=0.357 Sum_probs=249.2
Q ss_pred CccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEE-ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679 140 DDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVT-VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 140 ~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~-~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~ 218 (458)
++..+.+..|..+.+++++.+++|.+||..++.. +.. +.+|.+.|.++++...+.+|++|+.|.+++|||..++++.
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 4566778888889999999999999999998876 444 8999999999999887889999999999999999999999
Q ss_pred EEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
..+.+ |...|.++...+..+++|+.|.+|++|+++++.. +..+.+|..+|.++..+ +.++++|+.|++|++||+.+
T Consensus 285 ~~l~g-h~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 285 HSLQG-HTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred EEecC-CCceEEEEEccCceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence 99997 9999999999999999999999999999997664 77888899999999986 88999999999999999997
Q ss_pred CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-CeeEEEeCCCCeEEEEEcCCCCeEEEE
Q 012679 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACLNSVDTGSQVCALLWNKNERELLSS 377 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~ 377 (458)
.+. +..+.+|...|+++.+.+. ..+++|+ .|++|++||+++. +++.++..+..+. -.....++.|++
T Consensus 361 ~~c------l~sl~gH~~~V~sl~~~~~--~~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs- 428 (537)
T KOG0274|consen 361 GKC------LKSLSGHTGRVYSLIVDSE--NRLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVS- 428 (537)
T ss_pred cee------eeeecCCcceEEEEEecCc--ceEEeee--eccceEeecCCchhhhhhhhcCCcccc-cccccccceeEe-
Confidence 776 9999999999999988763 6777776 9999999999999 9999988766554 334456777877
Q ss_pred ecCCCCcEEEEeCCCceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 378 HGFTQNQLTLWKYPSMVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 378 ~g~~d~~i~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
+..|++|++||..+++.+..+.+ |...|..+++. ...+++++.||++++||+..+......
T Consensus 429 -~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 429 -SSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred -ccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 55899999999999999999998 77889999886 457888999999999999988877644
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.9e-33 Score=246.81 Aligned_cols=237 Identities=22% Similarity=0.427 Sum_probs=207.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679 182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVE 261 (458)
Q Consensus 182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 261 (458)
....|+|+.+. ...+++|..|.+|+|||..+..+++.+.+ |.+.|.|+.++...|++|+.|.+|++||+.+++. +.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~G-HtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~-l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTG-HTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEP-LN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhc-CCCcEEeeeccceEEEecCCCceEEEEeccCCch-hh
Confidence 35679999984 55799999999999999999999999998 9999999999999999999999999999998885 78
Q ss_pred EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe
Q 012679 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341 (458)
Q Consensus 262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~ 341 (458)
++.+|...|..+.|+ ..++++++.|.++.+||+..+.. ....+.+.+|.++|..+.|+. .++++++ .|++
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~---it~rrVLvGHrAaVNvVdfd~---kyIVsAS--gDRT 341 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDFDD---KYIVSAS--GDRT 341 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH---HHHHHHHhhhhhheeeecccc---ceEEEec--CCce
Confidence 888999999999996 56999999999999999988764 333567889999999999975 3777776 8999
Q ss_pred EEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEE
Q 012679 342 IKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVAS 420 (458)
Q Consensus 342 i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 420 (458)
|++|++.++++++++..+ ..|.++.+ .++.+++ |.+|++|++||+..|.++..++||..-|.++.| |.+.+++
T Consensus 342 ikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVS--GSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS 415 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS 415 (499)
T ss_pred EEEEeccceeeehhhhcccccceehhc--cCeEEEe--cCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeee
Confidence 999999999999998654 34655554 5666666 889999999999999999999999999999999 6778999
Q ss_pred EeCCCcEEEEecCCCCcc
Q 012679 421 AAADETLRFWNVFGAPQV 438 (458)
Q Consensus 421 ~s~Dg~i~iW~~~~~~~~ 438 (458)
|+.||+|++||+..+...
T Consensus 416 GaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDP 433 (499)
T ss_pred ccccceEEEEecccccCC
Confidence 999999999999876654
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.7e-30 Score=272.53 Aligned_cols=278 Identities=13% Similarity=0.246 Sum_probs=223.0
Q ss_pred CccccceeeccC--CCeEEEEcCCEEEEEECCCC----Ce--eeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEE
Q 012679 140 DDYYLNLLDWGS--SNVLAIALGSTVYLWDASDG----TT--SELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLW 210 (458)
Q Consensus 140 ~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~----~~--~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iw 210 (458)
....+.+++|++ +.+++++.|+.|+||+.... .. .....+.+ ...|.+++|++ ++.+||+++.||.|+||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 345688899987 34778889999999997542 11 11233333 46799999987 57899999999999999
Q ss_pred eCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEc-CCCCEEEEEE
Q 012679 211 DSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWS-ASGQQLASGG 286 (458)
Q Consensus 211 d~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~sg~ 286 (458)
|+.+++.+..+.. |...|.+++|+ +.+|++|+.||.|++||++++.. +..+..+ ..|+++.|+ +++.+|++|+
T Consensus 561 d~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 561 DVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred ECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeCCCCCEEEEEe
Confidence 9999999988887 99999999995 57999999999999999987664 4555544 679999995 5799999999
Q ss_pred CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC------CeeEEEeC-C
Q 012679 287 NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG------ACLNSVDT-G 359 (458)
Q Consensus 287 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~------~~~~~~~~-~ 359 (458)
.||.|++||++.... ++..+.+|...|.++.|.+ + ..+++++ .|+.|++||+..+ .++..+.. .
T Consensus 638 ~dg~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~~-~-~~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~ 708 (793)
T PLN00181 638 ADHKVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFVD-S-STLVSSS--TDNTLKLWDLSMSISGINETPLHSFMGHT 708 (793)
T ss_pred CCCeEEEEECCCCCc-----cceEecCCCCCEEEEEEeC-C-CEEEEEE--CCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence 999999999987542 1556778999999999974 3 4566665 8999999999753 45666654 4
Q ss_pred CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE-------------eCCCCcEEEEEEcCCCCEEEEEeCCCc
Q 012679 360 SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL-------------SGHTSRVLFMAQSPDGCTVASAAADET 426 (458)
Q Consensus 360 ~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~-------------~~h~~~V~~l~~spdg~~l~s~s~Dg~ 426 (458)
..+..+.|++++.+|++ |..|+.|.+|+.....++..+ ..|...|.+++|+|++..|++|+.||.
T Consensus 709 ~~i~~v~~s~~~~~las--gs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 709 NVKNFVGLSVSDGYIAT--GSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred CCeeEEEEcCCCCEEEE--EeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 56789999999998888 568999999998765443222 234567999999999999999999999
Q ss_pred EEEEec
Q 012679 427 LRFWNV 432 (458)
Q Consensus 427 i~iW~~ 432 (458)
|+||++
T Consensus 787 I~i~~~ 792 (793)
T PLN00181 787 IKILEM 792 (793)
T ss_pred EEEEec
Confidence 999996
No 41
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-31 Score=224.70 Aligned_cols=262 Identities=24% Similarity=0.398 Sum_probs=220.2
Q ss_pred cCCEEEEEECC-CCCeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCC-ceeeEEecCCCcccEEEEEeC
Q 012679 159 LGSTVYLWDAS-DGTTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTA-NRQLRTLRGGHRSRVGSLAWN 235 (458)
Q Consensus 159 ~d~~v~iwd~~-~~~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~~ 235 (458)
..|.++|.++. .+.+.....+. -.+.+..|+|+++ .+.+++++.||.++|||+.. ..+++.++. |...|.++.|+
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn 113 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWN 113 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEeccc
Confidence 46899999996 44444455554 3678999999994 56788899999999999643 357777887 99999999996
Q ss_pred ---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee
Q 012679 236 ---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311 (458)
Q Consensus 236 ---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 311 (458)
+..+++++.||+|++|+...++. +.++.+|...|...+|+| ..+.+++++.|+++++||++.... ...+
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk------~~~i 186 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNS-VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK------FMSI 186 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcc-eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc------eeEE
Confidence 57888889999999999986665 788999999999999999 688999999999999999988755 4458
Q ss_pred cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679 312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 312 ~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd 389 (458)
..|...+.++.|+....+++++|+ .|+.|+.||+++.+ ++..+.. +-.|..+.|+|....+++++. -|-+++|||
T Consensus 187 ~ah~~Eil~cdw~ky~~~vl~Tg~--vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas-YDmT~riw~ 263 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYNHNVLATGG--VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS-YDMTVRIWD 263 (311)
T ss_pred EeccceeEeecccccCCcEEEecC--CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcc-ccceEEecc
Confidence 899999999999999999999988 99999999999854 5555543 446999999999888877644 689999999
Q ss_pred CCCc-eeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEec
Q 012679 390 YPSM-VKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNV 432 (458)
Q Consensus 390 ~~~~-~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~ 432 (458)
.... ..+.+..-|+.-|..+.||+ ++.++|+++.|+.++||+-
T Consensus 264 ~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 264 PERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9844 45556677899999999998 6779999999999999983
No 42
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-30 Score=218.06 Aligned_cols=271 Identities=17% Similarity=0.293 Sum_probs=231.2
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.++.+.++. +..++++.|.+|++||...|.+ +.++.+|...|..++.+.|+..+++|+.|..|++||+++|+.++.
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l--iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr 96 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL--IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR 96 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccce--eeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee
Confidence 466666764 7799999999999999999988 889999999999999999999999999999999999999999999
Q ss_pred ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC-eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
+.+ |.+.|+.+.|| ...+++|+.|..+++||.+... .+++.+......|.++..+ +..|++|+.||+++.||++
T Consensus 97 ~rg-H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR 173 (307)
T KOG0316|consen 97 FRG-HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIR 173 (307)
T ss_pred ccc-ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEee
Confidence 998 99999999997 5899999999999999998764 4567777778889998874 6789999999999999999
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC---eEEEEEcCCCCeE
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ---VCALLWNKNEREL 374 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~---v~~~~~s~~~~~l 374 (458)
.+.. .. .....+|+++.|+++++..|+++ .|+++++.|-.+|+.+..+..+.. -...+++.....+
T Consensus 174 ~G~l------~s--Dy~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 174 KGTL------SS--DYFGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred ccee------eh--hhcCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 9865 22 23456899999999988888865 899999999999999988865432 3345566666666
Q ss_pred EEEecCCCCcEEEEeCCCceeeEEEeCCCCc-EEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSR-VLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
++ |.+||.+++||+.....+..+..|... |+.++++|.-..++++.. +.+.+|.-
T Consensus 243 ~s--gSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 243 FS--GSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQ 298 (307)
T ss_pred Ee--ccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceeceee
Confidence 66 789999999999999999999988877 899999998777777654 45666653
No 43
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-29 Score=217.56 Aligned_cols=247 Identities=24% Similarity=0.424 Sum_probs=210.8
Q ss_pred eeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCC---ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCc
Q 012679 174 SELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTA---NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGL 247 (458)
Q Consensus 174 ~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~---~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~ 247 (458)
.....+++|.+.+..++|+|- |..||+|+.|..|+||+... -.+...+..+|...|.+++| ++++|++|+.|++
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 346778899999999999997 99999999999999999884 45566676779999999999 5899999999999
Q ss_pred EEEEEccCCC-eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679 248 IINNDVRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326 (458)
Q Consensus 248 i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 326 (458)
+.||.-..+. .++..+.||..+|.+++|+++|++||+++.|..|-||.+..... ......+++|...|+.+.|+|
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE---fec~aVL~~HtqDVK~V~WHP- 160 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE---FECIAVLQEHTQDVKHVIWHP- 160 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc---EEEEeeeccccccccEEEEcC-
Confidence 9999866443 46789999999999999999999999999999999999885443 455788999999999999999
Q ss_pred CCcEEEEeCCCCCCeEEEEECC---CCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679 327 QSNLLATGGGGGDRCIKFWNTH---TGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH 402 (458)
Q Consensus 327 ~~~ll~s~~g~~d~~i~lwd~~---~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h 402 (458)
...||++++ .|.+|++|+-. ...+++++..+ ..|.+++|++.|..|+++ ..|++++||.+.+.-. .-|
T Consensus 161 t~dlL~S~S--YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~--sdD~tv~Iw~~~~~~~----~~~ 232 (312)
T KOG0645|consen 161 TEDLLFSCS--YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC--SDDGTVSIWRLYTDLS----GMH 232 (312)
T ss_pred CcceeEEec--cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe--cCCcceEeeeeccCcc----hhc
Confidence 577888887 99999999876 34578888764 489999999999999984 4899999998652211 237
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
...+..++|. ...|+|++.|+.|+++.-..
T Consensus 233 sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 233 SRALYDVPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred ccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence 7889999998 44899999999999998764
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.8e-30 Score=237.67 Aligned_cols=251 Identities=30% Similarity=0.535 Sum_probs=218.6
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEcc
Q 012679 177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVR 254 (458)
Q Consensus 177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~ 254 (458)
.++.+|.++|++++|+|++++|++++.+|.|.+|++.+++....+.. |...+..+.|. +..|++++.+|.|.+||+.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 34568999999999999999999999999999999998887777776 88899999994 5689999999999999998
Q ss_pred CCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679 255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG 334 (458)
Q Consensus 255 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~ 334 (458)
.... ...+..|...+.++.|+++++++++++.||.|.+||+..... ...+..|...|.+++|+|+ ..+++++
T Consensus 82 ~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~-~~~l~~~ 153 (289)
T cd00200 82 TGEC-VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC------LTTLRGHTDWVNSVAFSPD-GTFVASS 153 (289)
T ss_pred cccc-eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE------EEEeccCCCcEEEEEEcCc-CCEEEEE
Confidence 7543 567778888999999999999999988899999999986554 6667789999999999997 5566665
Q ss_pred CCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679 335 GGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 335 ~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp 413 (458)
+ .|+.|++||+++++.+..+..+ ..+.++.|+|+++.+++++ .++.|.+||+..++.+..+..|...|.+++|+|
T Consensus 154 ~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 154 S--QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS--SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred c--CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec--CCCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence 4 6999999999998888887654 4899999999998888853 599999999999999999988999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 414 DGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 414 dg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
++.++++++.||.|++|++........
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~~~~~~ 256 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQT 256 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCceeEEE
Confidence 999999888899999999987655444
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-31 Score=249.28 Aligned_cols=248 Identities=21% Similarity=0.332 Sum_probs=227.3
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCC
Q 012679 179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVR 256 (458)
Q Consensus 179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 256 (458)
+..+...|.+|.++|...+++++-.+|.|.||+.++...++.+.. ...+|.+..| ..+.+++|+.|..|+||+..+.
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 445788999999999999999999999999999999999999997 8889999888 4689999999999999999998
Q ss_pred CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679 257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG 336 (458)
Q Consensus 257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g 336 (458)
+. +..+.+|...|.+++.+|...++++++.|-+|++||.+..- .+.+.+++|...|.+++|.|...+.+|+++
T Consensus 88 ek-V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w-----a~~qtfeGH~HyVMqv~fnPkD~ntFaS~s- 160 (794)
T KOG0276|consen 88 EK-VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW-----ACEQTFEGHEHYVMQVAFNPKDPNTFASAS- 160 (794)
T ss_pred ee-eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce-----eeeeEEcCcceEEEEEEecCCCccceeeee-
Confidence 86 78999999999999999999999999999999999998753 237889999999999999999999999988
Q ss_pred CCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCC--CeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679 337 GGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNE--RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 337 ~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~--~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp 413 (458)
-|++|++|.+....+..+++. ...|+++.|-+.| .+|++ |.+|..|+|||+.+..++.++.||+..|..+.|+|
T Consensus 161 -LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs--gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 161 -LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS--GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred -ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEe--cCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 999999999999999999875 4579999999877 46666 77999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCc
Q 012679 414 DGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 414 dg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
.-..++||+.||++|||+-.+-..
T Consensus 238 ~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred CCcEEEEecCCccEEEecCcceeh
Confidence 999999999999999999765443
No 46
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.3e-30 Score=231.15 Aligned_cols=277 Identities=24% Similarity=0.436 Sum_probs=227.6
Q ss_pred ccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCC---CEEEEEecCCeEEEEeCCCcee
Q 012679 141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDG---RHIAIGLNNCQVQLWDSTANRQ 217 (458)
Q Consensus 141 d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g---~~la~g~~dg~v~iwd~~~~~~ 217 (458)
|-.+..+.-.+..+++++.||.+++||.. |+. ...+.+|.++|.+++|.-.. ..|++++.|.++++|..+.++.
T Consensus 105 dDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~--~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 105 DDWVSSVKGASKWILTGSYDGTSRIWDLK-GKS--IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred hhhhhhhcccCceEEEeecCCeeEEEecC-Cce--EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 33556666667899999999999999976 444 67788999999999986533 3599999999999999887653
Q ss_pred eEEe-c--CCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCC------------------------CeeEEEEccccc
Q 012679 218 LRTL-R--GGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVR------------------------DHIVETYRGHNQ 268 (458)
Q Consensus 218 ~~~~-~--~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~------------------------~~~~~~~~~h~~ 268 (458)
.... . .+|...|-+++. ++..+++|+.|..|.+|+.... ..++..+.+|..
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 3221 1 259999999998 5899999999999999993321 123567889999
Q ss_pred ceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679 269 EVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH 348 (458)
Q Consensus 269 ~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~ 348 (458)
+|.++.|++ ...+.+++.|.+|+.||+.++.. ...+. ....+.++..+| ...|+++|+ .|+.|++||.+
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~------~~~~~-~~ksl~~i~~~~-~~~Ll~~gs--sdr~irl~DPR 330 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL------KSTLT-TNKSLNCISYSP-LSKLLASGS--SDRHIRLWDPR 330 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccc------eeeee-cCcceeEeeccc-ccceeeecC--CCCceeecCCC
Confidence 999999987 77899999999999999999887 44443 356789999999 577888876 99999999999
Q ss_pred CCC---eeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-eeEEEeCCCCcEEEEEEcCCCCEEEEEeC
Q 012679 349 TGA---CLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KMAELSGHTSRVLFMAQSPDGCTVASAAA 423 (458)
Q Consensus 349 ~~~---~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 423 (458)
++. ..+++ .+..-|.++.|+|...+++++ |..||++++||+++.. ++..+.+|.+.|.++.|. ++..|++||.
T Consensus 331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S-~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGa 408 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS-GSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGA 408 (423)
T ss_pred CCCCceeEEeeecchhhhhheecCCCCceEEEE-EecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccC
Confidence 864 22333 445679999999999888877 6689999999999887 999999999999999998 5668999999
Q ss_pred CCcEEEEecC
Q 012679 424 DETLRFWNVF 433 (458)
Q Consensus 424 Dg~i~iW~~~ 433 (458)
|.+|+|+.-.
T Consensus 409 D~~l~i~~~~ 418 (423)
T KOG0313|consen 409 DNKLRIFKGS 418 (423)
T ss_pred cceEEEeccc
Confidence 9999998643
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=1.8e-29 Score=234.04 Aligned_cols=280 Identities=21% Similarity=0.419 Sum_probs=229.7
Q ss_pred cccceeeccCCCeEEEE--cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC----CeEEEEeCCCc
Q 012679 142 YYLNLLDWGSSNVLAIA--LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN----CQVQLWDSTAN 215 (458)
Q Consensus 142 ~~~~~~~~~~~~~la~~--~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d----g~v~iwd~~~~ 215 (458)
+.++...++|.....++ ..|.|+|||....+.....+++.-.++|..++|+.|+++|++.+.. |.+.+|| +|
T Consensus 60 ~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG 137 (603)
T KOG0318|consen 60 HQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SG 137 (603)
T ss_pred ceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CC
Confidence 34556667775544444 4589999998765543344556667899999999999988776543 3566676 77
Q ss_pred eeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 216 RQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 216 ~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
..+..+.+ |..+|.+++|. +-.+++|+.|+.|.+|+-. .-+...++..|..-|.++.|+|||..+|+++.||.|.
T Consensus 138 ~SvGei~G-hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 138 NSVGEITG-HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred Cccceeec-cceeEeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 78888887 99999999994 6789999999999999854 2334566778999999999999999999999999999
Q ss_pred EEeCCCCCCCCcceeeeeec---ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC----CeEEE
Q 012679 293 IWDRSMASSNSVTQWLHRLE---EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS----QVCAL 365 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~----~v~~~ 365 (458)
+||-.+++. +..+. +|.+.|.+++|+||+..++.++ .|.++++||+.+.++++++..+. +...+
T Consensus 216 iyDGktge~------vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 216 IYDGKTGEK------VGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred EEcCCCccE------EEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence 999888876 55555 8999999999999877776654 79999999999999999997654 45566
Q ss_pred EEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 366 ~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
.|- ...|++.+ .+|.|.+++...+..+..+.||...|+++..+||+.+|++|+.||.|.-|+...+..-
T Consensus 287 lWq--kd~lItVS--l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 287 LWQ--KDHLITVS--LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred EEe--CCeEEEEE--cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 676 34444433 6899999999999999999999999999999999999999999999999999877654
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=3.3e-30 Score=247.89 Aligned_cols=289 Identities=22% Similarity=0.364 Sum_probs=247.0
Q ss_pred eeeeCCCCCCccccceeeccCCC-eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Q 012679 131 RTLDAPDLVDDYYLNLLDWGSSN-VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQL 209 (458)
Q Consensus 131 ~~l~~~~~~~d~~~~~~~~~~~~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~i 209 (458)
..++.++.+.| +..++++.++ +++.+.++.+++|+..+.++ +.++. .+.+.+..|.|.++++++|...|.+.+
T Consensus 365 ~~i~~~GHR~d--VRsl~vS~d~~~~~Sga~~SikiWn~~t~kc--iRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 365 SNIEIGGHRSD--VRSLCVSSDSILLASGAGESIKIWNRDTLKC--IRTIT--CGYILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred ceeeeccchhh--eeEEEeecCceeeeecCCCcEEEEEccCcce--eEEec--cccEEEEEecCCCceEEEeccCCceEE
Confidence 34666677776 5667777755 55555678999999999887 66665 348999999999999999999999999
Q ss_pred EeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCe------eEE-----EEcccccceEeEEEc
Q 012679 210 WDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDH------IVE-----TYRGHNQEVCGLKWS 276 (458)
Q Consensus 210 wd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~------~~~-----~~~~h~~~v~~l~~s 276 (458)
||+.+...+.++.. |.+.|++++. ++..+++|+.|.+|++||..-... .+- ....-...|.|+.+|
T Consensus 439 fdlaS~~l~Eti~A-HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 439 FDLASASLVETIRA-HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred EEeehhhhhhhhhc-cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 99999999999886 9999999998 678999999999999999752110 000 111345689999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE
Q 012679 277 ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV 356 (458)
Q Consensus 277 pd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~ 356 (458)
|||++||++--|++|+||-+.+.+. ...+.+|.-+|.|+..+|+ +.++++|+ .|+.|++|-+.-|.|-+++
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKF------flsLYGHkLPV~smDIS~D-SklivTgS--ADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKF------FLSLYGHKLPVLSMDISPD-SKLIVTGS--ADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceee------eeeecccccceeEEeccCC-cCeEEecc--CCCceEEeccccchhhhhh
Confidence 9999999999999999999998766 7788899999999999996 67788877 9999999999999998877
Q ss_pred -eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 357 -DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 357 -~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
.+...|.++.|.|....++++ | .|+.|+-||-...+.+..+.+|...|+|++.+|+|.++++++.|.+|++|.-...
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~-g-KD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTC-G-KDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred hcccCceeEEEEcccceeEEEe-c-CcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 556789999999988888775 3 8999999999999999999999999999999999999999999999999997664
Q ss_pred Cc
Q 012679 436 PQ 437 (458)
Q Consensus 436 ~~ 437 (458)
..
T Consensus 667 ~~ 668 (888)
T KOG0306|consen 667 IL 668 (888)
T ss_pred ce
Confidence 33
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.3e-30 Score=251.58 Aligned_cols=284 Identities=20% Similarity=0.352 Sum_probs=241.4
Q ss_pred cceeeccCCC--eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 144 LNLLDWGSSN--VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 144 ~~~~~~~~~~--~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
+..++|+|.+ ++++--.|.|.+||..-+.+ +..+.+|.++|..|+|+|++.++++|+.|-.|+||+..+.+++.++
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tl--i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL--IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhH--HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence 3446777754 77777889999999998887 7889999999999999999999999999999999999999999999
Q ss_pred cCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 012679 222 RGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA 299 (458)
Q Consensus 222 ~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~ 299 (458)
.+ |-.-|..+.|+. ..|++++.|-+|+||+..++.+ +..+.||...|.|..|+|...+++++|-|.+|+|||+...
T Consensus 90 ~G-HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 90 LG-HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred cc-ccceeEEeeccCCCceEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 98 999999999975 6899999999999999998775 7899999999999999999999999999999999998653
Q ss_pred CCCC-----------------------cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe---e
Q 012679 300 SSNS-----------------------VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---L 353 (458)
Q Consensus 300 ~~~~-----------------------~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~---~ 353 (458)
.... .....+.+.+|...|+.++|+|. --++++|+ .|+.|++|.+..-+. -
T Consensus 168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT-lpliVSG~--DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT-LPLIVSGA--DDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC-cceEEecC--CcceeeEEEeccccceeeh
Confidence 2211 01113567899999999999994 66788876 999999999865432 1
Q ss_pred EEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 354 NSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 354 ~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
....+-..|.++.|+|....+++. +.|+.|+|||+...+.+.+++...++-+.++.+|..++++ ++.|+-+.+|.+.
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSn--sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VFkle 321 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSN--SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVFKLE 321 (1202)
T ss_pred hhhcccCCcceEEecCccceeEec--CCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee-eecCCceEEEEEc
Confidence 222355789999999999999984 4999999999999999999988888999999999998777 5567777788886
Q ss_pred CCCc
Q 012679 434 GAPQ 437 (458)
Q Consensus 434 ~~~~ 437 (458)
...+
T Consensus 322 RErp 325 (1202)
T KOG0292|consen 322 RERP 325 (1202)
T ss_pred ccCc
Confidence 4443
No 50
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=8.8e-30 Score=217.66 Aligned_cols=278 Identities=19% Similarity=0.291 Sum_probs=234.0
Q ss_pred cceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 144 LNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 144 ~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
++.+.++. +.|++++.|.+..||-..+|+. +-++.+|.+.|+|+...-+.+++++|+.|.+++|||+++|+++..+
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGer--lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~ 90 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGER--LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW 90 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCce--eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe
Confidence 44455554 6689999999999999888877 8999999999999999999999999999999999999999999999
Q ss_pred cCCCcccEEEEEe--CCCeEEEEe-----CCCcEEEEEccCC------CeeEEEEcccccceEeEEEcCCCCEEEEEECC
Q 012679 222 RGGHRSRVGSLAW--NNHILTTGG-----MDGLIINNDVRVR------DHIVETYRGHNQEVCGLKWSASGQQLASGGND 288 (458)
Q Consensus 222 ~~~~~~~v~~l~~--~~~~l~sg~-----~dg~i~vwd~~~~------~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d 288 (458)
. ...+|..+.| ++++++... ..+.|.++|++.. +.+...+..+...++.+-|.|-++.|++|..|
T Consensus 91 k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 91 K--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred e--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC
Confidence 8 6677887777 466666654 3468999999843 23456677788999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEc
Q 012679 289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWN 368 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s 368 (458)
|.|.+||++++... +...+.|...|+.+.++++ ..++++++ .|.+-++||..+-++++++.+..+|++.+++
T Consensus 169 G~is~~da~~g~~~-----v~s~~~h~~~Ind~q~s~d-~T~FiT~s--~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 169 GSISIYDARTGKEL-----VDSDEEHSSKINDLQFSRD-RTYFITGS--KDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred CcEEEEEcccCcee-----eechhhhccccccccccCC-cceEEecc--cCccceeeeccceeeEEEeeecccccceecc
Confidence 99999999987542 5666789999999999997 55666766 9999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCcE------------EEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 369 KNERELLSSHGFTQNQL------------TLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 369 ~~~~~l~~~~g~~d~~i------------~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
|....++...|.+-..| ++|++-..+.+..+++|-++|++++|+|+|+..++|+.||.||+..+.
T Consensus 241 P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 99888888544322222 233333445677889999999999999999999999999999998664
No 51
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=6.5e-29 Score=245.43 Aligned_cols=284 Identities=19% Similarity=0.294 Sum_probs=217.1
Q ss_pred ccccceeeccCCCeEEEEcCCEEEEEECCCCCe----------ee-EEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEE
Q 012679 141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDGTT----------SE-LVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQ 208 (458)
Q Consensus 141 d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~----------~~-~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~ 208 (458)
+..+....|+..+++++..+.....|+...+.. .. ...+.+|.+.|++++|+| ++++||+|+.||+|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 334555667777778777777777776544321 10 123668999999999999 889999999999999
Q ss_pred EEeCCCce-------eeEEecCCCcccEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC
Q 012679 209 LWDSTANR-------QLRTLRGGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS 278 (458)
Q Consensus 209 iwd~~~~~-------~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd 278 (458)
|||+.++. .+..+.+ |...|.+++|++ ++|++|+.|+.|++||++++.. ...+.+|...|.+++|+|+
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred EEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEEEcCCCCceEEEEEECC
Confidence 99997653 4556666 999999999963 6899999999999999997754 6778899999999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccc-eeEEEecCCCCcEEEEeC-CCCCCeEEEEECCCCC-eeEE
Q 012679 279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA-VKAIAWCPFQSNLLATGG-GGGDRCIKFWNTHTGA-CLNS 355 (458)
Q Consensus 279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~ll~s~~-g~~d~~i~lwd~~~~~-~~~~ 355 (458)
+.+|++|+.|+.|+|||++++.. +..+..|... +..+.|.+++..++++|. ++.|+.|++||+++.. ++..
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~------v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTI------VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcE------EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 99999999999999999998765 6677788764 456789997777766652 2468999999998754 4443
Q ss_pred Ee--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 356 VD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 356 ~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
.. ....+....|+++++.++++ |..|+.|++||+.+++.+..... +..++..++|.|.-. +-...-...|+|.+
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lg-gkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l 330 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIG-SKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS--LDTRKCEIARFYAL 330 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEE-EeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc--ccccceeeeEEEEe
Confidence 33 23446667899999988875 44699999999999888776644 446788999998532 22233345677877
Q ss_pred CCC
Q 012679 433 FGA 435 (458)
Q Consensus 433 ~~~ 435 (458)
...
T Consensus 331 ~~~ 333 (493)
T PTZ00421 331 TYH 333 (493)
T ss_pred cCC
Confidence 543
No 52
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=244.33 Aligned_cols=283 Identities=22% Similarity=0.376 Sum_probs=241.4
Q ss_pred cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEc-CCCCEEEEEecCCeEEEEeCCCceeeEEecCCCccc
Q 012679 150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWA-PDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR 228 (458)
Q Consensus 150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s-~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~ 228 (458)
+.+.++++..+..+.+||.++.++ ...+-|..+.|.+|+|- |+.++||++++.+.+++|++.+..+. .+.+ |...
T Consensus 292 ~~~~~l~vtaeQnl~l~d~~~l~i--~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~G-H~e~ 367 (775)
T KOG0319|consen 292 SMSQLLLVTAEQNLFLYDEDELTI--VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPG-HTEA 367 (775)
T ss_pred ccCceEEEEccceEEEEEccccEE--ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeC-chhh
Confidence 347899999999999999988876 66677778899999975 67899999999999999998887765 4554 9999
Q ss_pred EEEEE-e-CCCeEEEEeCCCcEEEEEccCCC---eeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCC
Q 012679 229 VGSLA-W-NNHILTTGGMDGLIINNDVRVRD---HIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSN 302 (458)
Q Consensus 229 v~~l~-~-~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~ 302 (458)
|.++. | +|.+|++|+.|.++++|.+..+. .++....+|...|.+++++..+ .+|+++|.|+++++|++...+..
T Consensus 368 vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~ 447 (775)
T KOG0319|consen 368 VLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET 447 (775)
T ss_pred eeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccc
Confidence 99999 5 46799999999999999884432 2355667999999999997754 57899999999999999873322
Q ss_pred Ccceeee----eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEE
Q 012679 303 SVTQWLH----RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSS 377 (458)
Q Consensus 303 ~~~~~~~----~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~ 377 (458)
.. .... ....|...|++++.+| +..|+|+|+ .|++.++|++..+....++..+ ..+.++.|++..+.++++
T Consensus 448 ~~-~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~ 523 (775)
T KOG0319|consen 448 AF-PIVLTCRYTERAHDKDINCVAIAP-NDKLIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATC 523 (775)
T ss_pred cc-cceehhhHHHHhhcccccceEecC-CCceEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEec
Confidence 11 1122 3457999999999999 588999987 9999999999988888888764 569999999999999996
Q ss_pred ecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 378 ~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
+ .|.+|+||.+.+..++.++.||+..|..+.|-.+|..|++++.||.|++|++.+.......-
T Consensus 524 S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 524 S--GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred c--CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence 6 69999999999999999999999999999999999999999999999999999887765543
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.5e-29 Score=265.87 Aligned_cols=262 Identities=17% Similarity=0.290 Sum_probs=213.2
Q ss_pred CCEEEEEECCCCCeeeE---EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc----e----eeEEecCCCccc
Q 012679 160 GSTVYLWDASDGTTSEL---VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----R----QLRTLRGGHRSR 228 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~---~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----~----~~~~~~~~~~~~ 228 (458)
+|.+++|+..+...... ..+..|.+.|++++|+|+|++||+|+.||.|+|||+... . ....+. +...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~ 534 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSK 534 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCc
Confidence 67788888776544222 123458999999999999999999999999999997542 1 122233 4567
Q ss_pred EEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCc
Q 012679 229 VGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSV 304 (458)
Q Consensus 229 v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~ 304 (458)
+.+++|+ +.+|++++.||.|++||+.++. .+..+.+|...|.+++|+| ++.+|++|+.||.|++||++.+..
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--- 610 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--- 610 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE---
Confidence 8999995 5799999999999999998765 4677889999999999997 789999999999999999987655
Q ss_pred ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCC
Q 012679 305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSVD-TGSQVCALLWNKNERELLSSHGFTQ 382 (458)
Q Consensus 305 ~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d 382 (458)
+..+..+ ..|.++.|.+....++++|+ .|+.|++||++++. .+..+. +...|..+.|. ++..+++ +..|
T Consensus 611 ---~~~~~~~-~~v~~v~~~~~~g~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs--~s~D 681 (793)
T PLN00181 611 ---IGTIKTK-ANICCVQFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVS--SSTD 681 (793)
T ss_pred ---EEEEecC-CCeEEEEEeCCCCCEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEE--EECC
Confidence 5555544 67899999776677888877 99999999998865 344443 45679999997 6777777 4479
Q ss_pred CcEEEEeCCC------ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 383 NQLTLWKYPS------MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 383 ~~i~iwd~~~------~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
+.|+|||+.. ...+..+.+|...+..++|+|++.+|++|+.|+.|++|+.....
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 9999999974 35678899999999999999999999999999999999976553
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.8e-31 Score=221.97 Aligned_cols=236 Identities=25% Similarity=0.469 Sum_probs=203.8
Q ss_pred cceeeccC---CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 144 LNLLDWGS---SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 144 ~~~~~~~~---~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
+-.+.|++ +.+++++.||+++|||... ...++..+++|...|.++.|++ ++..+++++.||+|++|+...++.+.
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~ 141 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ 141 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCC-CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE
Confidence 44578876 5588899999999999543 3356888999999999999998 67788889999999999999999999
Q ss_pred EecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEe
Q 012679 220 TLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWD 295 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd 295 (458)
++.+ |...|....|+ ++++++++.||++++||++.....+ .+..|..+|.++.|+. +.+.|++|+.|+.|++||
T Consensus 142 Tf~g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 142 TFNG-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred eecC-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee-EEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 9998 99999999995 6899999999999999999887644 4889999999999998 677899999999999999
Q ss_pred CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEEeCCC-CeEEEEEcCCCCe
Q 012679 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSVDTGS-QVCALLWNKNERE 373 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~~~~-~v~~~~~s~~~~~ 373 (458)
+++.+.+ +..+.+|.-+|+.++|+|....+|++++ .|-++++||...+. ++.+.+++. -++.+.|++....
T Consensus 220 ir~~r~p-----l~eL~gh~~AVRkvk~Sph~~~lLaSas--YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~ 292 (311)
T KOG0277|consen 220 IRNLRTP-----LFELNGHGLAVRKVKFSPHHASLLASAS--YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPG 292 (311)
T ss_pred hhhcccc-----ceeecCCceEEEEEecCcchhhHhhhcc--ccceEEecccccchhhhhhhhccceEEeccccccccCc
Confidence 9987753 7888999999999999999999999988 99999999998554 455555544 5899999998766
Q ss_pred EEEEecCCCCcEEEEeC
Q 012679 374 LLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 374 l~~~~g~~d~~i~iwd~ 390 (458)
.++.+| -|+.++||+.
T Consensus 293 ~vAs~g-WDe~l~Vw~p 308 (311)
T KOG0277|consen 293 QVASTG-WDELLYVWNP 308 (311)
T ss_pred eeeecc-cccceeeecc
Confidence 666655 7999999983
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.5e-31 Score=230.53 Aligned_cols=277 Identities=14% Similarity=0.293 Sum_probs=242.0
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEE------ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVT------VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA 214 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~------~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~ 214 (458)
++.|-.|+| +.+++++.||.|.+||..+|++..-.. +--+..+|.|+.|+.|...||+|+.||.|+||.+.+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 455556665 668899999999999999998643222 234678999999999999999999999999999999
Q ss_pred ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 215 ~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
|.+++.+...|...|+|+.| ++..+++++.|-++++.-+..+.. ++.+.+|++.|+...|.+||.++++++.||+|+
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk 373 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHIISASSDGTVK 373 (508)
T ss_pred chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence 99999999789999999999 578999999999999999998775 688999999999999999999999999999999
Q ss_pred EEeCCCCCCCCcceeeeeec--ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC----CCCeEEEE
Q 012679 293 IWDRSMASSNSVTQWLHRLE--EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT----GSQVCALL 366 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~----~~~v~~~~ 366 (458)
+|+..+..+ +.+++ +...+|..+..-|.+..-++++. ..++|++-++. |+.++++.. ++...+.+
T Consensus 374 vW~~KtteC------~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 374 VWHGKTTEC------LSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred EecCcchhh------hhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 999998877 44443 34568889988888777777776 78899999984 778888754 45677888
Q ss_pred EcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 367 WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 367 ~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
.+|.|..+.+.. .|+.++.|.+.+++...++..|...|..++-+|..+.|++-+.||.+++|.
T Consensus 445 lSpkGewiYcig--ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIG--EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEc--cCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999864 899999999999999999999999999999999999999999999999995
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=218.79 Aligned_cols=255 Identities=21% Similarity=0.384 Sum_probs=214.6
Q ss_pred eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC-ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEE
Q 012679 174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIIN 250 (458)
Q Consensus 174 ~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~v 250 (458)
.++..+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|++.. .+....+++ |.+.|..+.| +++.|++++.|.+|+.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEEecCCceEEE
Confidence 34567789999999999999999999999999999999643 445556665 9999999999 6899999999999999
Q ss_pred EEccCCCeeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCc
Q 012679 251 NDVRVRDHIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN 329 (458)
Q Consensus 251 wd~~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 329 (458)
||+++++. ...+++|..-|+.+.-+.-| .++.+|+.|+++++||++.... ++++. ....++++.|...+..
T Consensus 117 wD~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~------~~t~~-~kyqltAv~f~d~s~q 188 (338)
T KOG0265|consen 117 WDAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA------IKTFE-NKYQLTAVGFKDTSDQ 188 (338)
T ss_pred Eeccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch------hhccc-cceeEEEEEecccccc
Confidence 99999886 78889999999998854444 4567889999999999998776 44443 4678899999987666
Q ss_pred EEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC----ceeeEEEeCCC-
Q 012679 330 LLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPS----MVKMAELSGHT- 403 (458)
Q Consensus 330 ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~----~~~~~~~~~h~- 403 (458)
++. |+ -|+.|++||++.+.....+..+ ..|+.+..+++|.++++ .+.|+++++||++. ..++..+.+|.
T Consensus 189 v~s-gg--Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls--nsMd~tvrvwd~rp~~p~~R~v~if~g~~h 263 (338)
T KOG0265|consen 189 VIS-GG--IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS--NSMDNTVRVWDVRPFAPSQRCVKIFQGHIH 263 (338)
T ss_pred eee-cc--ccCceeeeccccCcceEEeecccCceeeEEeccCCCcccc--ccccceEEEEEecccCCCCceEEEeecchh
Confidence 654 44 8999999999999999988764 67999999999999998 56899999999864 34577777765
Q ss_pred ---CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 404 ---SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 404 ---~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
.....++|+|++..+..|+.|..+++||......+.+.+
T Consensus 264 nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp 305 (338)
T KOG0265|consen 264 NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP 305 (338)
T ss_pred hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC
Confidence 335778999999999999999999999998877766654
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.4e-30 Score=248.91 Aligned_cols=245 Identities=16% Similarity=0.327 Sum_probs=198.8
Q ss_pred EEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc----------------------------------------
Q 012679 177 VTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN---------------------------------------- 215 (458)
Q Consensus 177 ~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~---------------------------------------- 215 (458)
..+. .|.+.|+++.||+||+|||+|+.||.|+||.+...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3445 89999999999999999999999999999976540
Q ss_pred --------------------eeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEE
Q 012679 216 --------------------RQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLK 274 (458)
Q Consensus 216 --------------------~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~ 274 (458)
++++.+. +|.+.|..|+|+ +++|++++.|.+|++|++....+ +..+ .|...|+|++
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~C-L~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFK-GHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKEC-LKVF-SHNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhh-ccchhheecccccCCeeEeccccccEEeecCCCcce-eeEE-ecCCeeEEEE
Confidence 0112223 599999999996 78999999999999999986665 4554 6999999999
Q ss_pred EcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679 275 WSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353 (458)
Q Consensus 275 ~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~ 353 (458)
|+| |.+||++|+-||.|+||++...+. .....-..-|++++|.|+|...++ | +.+|.+++|++...+..
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~V-------v~W~Dl~~lITAvcy~PdGk~avI-G--t~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKV-------VDWNDLRDLITAVCYSPDGKGAVI-G--TFNGYCRFYDTEGLKLV 486 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCee-------EeehhhhhhheeEEeccCCceEEE-E--EeccEEEEEEccCCeEE
Confidence 999 899999999999999999987654 233334478999999999666555 4 49999999999988776
Q ss_pred EEEeC---------CCCeEEEEEcCCCC-eEEEEecCCCCcEEEEeCCCceeeEEEeCCCC--cEEEEEEcCCCCEEEEE
Q 012679 354 NSVDT---------GSQVCALLWNKNER-ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS--RVLFMAQSPDGCTVASA 421 (458)
Q Consensus 354 ~~~~~---------~~~v~~~~~s~~~~-~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~--~V~~l~~spdg~~l~s~ 421 (458)
..... +..|+.+.|.|... .+++++ .|..|+|||.++...+..|+|+.. .-....|+.||++|+++
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS--nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS--NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEec--CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 55421 23699999998655 355543 799999999999999999987653 33567899999999999
Q ss_pred eCCCcEEEEecCCCC
Q 012679 422 AADETLRFWNVFGAP 436 (458)
Q Consensus 422 s~Dg~i~iW~~~~~~ 436 (458)
+.|..|++|++....
T Consensus 565 seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSFN 579 (712)
T ss_pred ecCceEEEEeCCCCc
Confidence 999999999985444
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=234.75 Aligned_cols=287 Identities=17% Similarity=0.266 Sum_probs=243.4
Q ss_pred CCCCCCceeeeCCCCCCccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE
Q 012679 124 HIPQSSERTLDAPDLVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG 201 (458)
Q Consensus 124 ~i~~~~~~~l~~~~~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g 201 (458)
.+|.....++++|. ..++.+.|-. +.++++|.|..|++|++..++.....++.+-.+.|+++.|.+++++++++
T Consensus 162 ~lpS~~~~~ld~h~----gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa 237 (459)
T KOG0288|consen 162 TLPSRALFVLDAHE----GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAA 237 (459)
T ss_pred ccchhhhhhhhccc----cccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEee
Confidence 46667777788765 3467788855 67999999999999999888866677888888999999999999999999
Q ss_pred ecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC
Q 012679 202 LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279 (458)
Q Consensus 202 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~ 279 (458)
+.|+.+++|++...+...++.+ |...|+++.|. ...+++|+.|.+|+.||+....+....+. ...+..|..+ .
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS--I 312 (459)
T ss_pred cCCCceeeeeccchhhhhhhcc-cccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--cccccceEec--c
Confidence 9999999999999999999998 99999999993 34499999999999999997665433333 2345555554 5
Q ss_pred CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--
Q 012679 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-- 357 (458)
Q Consensus 280 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-- 357 (458)
..+++|-.|+.|++||++.... ......+ +.|+++..++++..++.++ .|.++.+.|+++.+....+.
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~------~~sv~~g-g~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADK------TRSVPLG-GRVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred eeeeecccccceEEEeccCCce------eeEeecC-cceeeEeeccCCeEEeeec---CCCceeeeecccccEEEEeecc
Confidence 6788999999999999998876 5555554 4999999999888888774 89999999999999888774
Q ss_pred ---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 358 ---TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS--RVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 358 ---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~--~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
+.+..+.++|+|++.|+++ |+.||.|+||++.+++....+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 383 g~k~asDwtrvvfSpd~~YvaA--GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAA--GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccccccccceeEECCCCceeee--ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 4567999999999999999 88999999999999999888876554 499999999999999999999999993
No 59
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.2e-29 Score=227.29 Aligned_cols=273 Identities=20% Similarity=0.308 Sum_probs=236.3
Q ss_pred cceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 144 LNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 144 ~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
+..++..+ +.+++++.|..+.++|...+++ +..++||...|+.+.++|+...+++++.|-.|+||...........
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~--l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQI--LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhh--hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 44555555 7899999999999999999888 8889999999999999999999999999999999999887766666
Q ss_pred cCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 222 RGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 222 ~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
.. |..+|+.+.. +|.+|++++.||++.+.|++++..+..... ...-.+++++|+|||.+|++|..||.|+|||+..
T Consensus 300 ~~-h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RP-HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cc-ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 66 9999999988 589999999999999999998876544333 2335689999999999999999999999999998
Q ss_pred CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC--CeEEEEEcCCCCeEEE
Q 012679 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS--QVCALLWNKNERELLS 376 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~ 376 (458)
+.. +..|.+|.++|++++|+.+ ++.++++. .|+.|++||++..+.+.++.... .+.++.|...|.+|++
T Consensus 379 ~~~------~a~Fpght~~vk~i~FsEN-GY~Lat~a--dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~ 449 (506)
T KOG0289|consen 379 QTN------VAKFPGHTGPVKAISFSEN-GYWLATAA--DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI 449 (506)
T ss_pred ccc------cccCCCCCCceeEEEeccC-ceEEEEEe--cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe
Confidence 876 7889999999999999985 56666665 89999999999999888886544 5999999999999999
Q ss_pred EecCCCCcEEEEeCC----CceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 377 SHGFTQNQLTLWKYP----SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~----~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
+ ..+ ++||-+. ++..+.++..|.+..+++.|....++++++|.|..++++.+
T Consensus 450 ~--g~~--l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 450 A--GSD--LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred e--cce--eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 5 244 5555544 67888888899999999999999999999999999998865
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.5e-28 Score=211.94 Aligned_cols=264 Identities=18% Similarity=0.280 Sum_probs=217.8
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeC--CCcEEEEEc
Q 012679 178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGM--DGLIINNDV 253 (458)
Q Consensus 178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~--dg~i~vwd~ 253 (458)
.+....+.|+++.|+++|.+|++++.|-.++|||..++++++++.. +.-.|..++| +.+.++.++. |.+|+..++
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 3444577899999999999999999999999999999999999987 7677777888 4666666666 889999999
Q ss_pred cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333 (458)
Q Consensus 254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s 333 (458)
.+.+. ++.+.||...|.+|+.+|-+..+++++.|++|++||++..++ ...+. ...-..+||.|. +.++|+
T Consensus 88 ~dNky-lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c------qg~l~--~~~~pi~AfDp~-GLifA~ 157 (311)
T KOG1446|consen 88 HDNKY-LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC------QGLLN--LSGRPIAAFDPE-GLIFAL 157 (311)
T ss_pred ecCce-EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC------ceEEe--cCCCcceeECCC-CcEEEE
Confidence 87764 899999999999999999999999999999999999997766 22222 222345789994 667777
Q ss_pred eCCCCCCeEEEEECCCC--CeeEEEeC----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc--
Q 012679 334 GGGGGDRCIKFWNTHTG--ACLNSVDT----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR-- 405 (458)
Q Consensus 334 ~~g~~d~~i~lwd~~~~--~~~~~~~~----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~-- 405 (458)
+. ....|++||++.- .+..++.. ..+.+.+.|+|+|++|+.++ ..+.+.+.|.-+|..+.++.++...
T Consensus 158 ~~--~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT--~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 158 AN--GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST--NASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred ec--CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe--CCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 65 3449999999974 35555533 46799999999999999965 7899999999999999999887643
Q ss_pred -EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCCCCCCccccccc
Q 012679 406 -VLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNR 456 (458)
Q Consensus 406 -V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (458)
-....|+||++++++|+.||+|.+|++.++.++.+...+...+....+|++
T Consensus 234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP 285 (311)
T ss_pred cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC
Confidence 267889999999999999999999999999998887777666666666654
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-28 Score=226.92 Aligned_cols=275 Identities=22% Similarity=0.315 Sum_probs=230.5
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.+..+++++ ..-++++..-.|.||+..+... ..++......|+++.|-.||++||+|...|.|+|||..+...++.
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~--~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV--RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred cceeEecCCCCCCceEEecccEEEEEecchhhh--hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 356677776 3467777788999999887665 444455577899999999999999999999999999888778888
Q ss_pred ecCCCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeC
Q 012679 221 LRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 221 ~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~ 296 (458)
+.. |..+|..+.| ++..|++|+.|+.+++||+.+... ...+.+|+..|.|.+|+|- +..+++||.||.|++||+
T Consensus 106 ~~a-h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 106 LYA-HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred Hhh-ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 887 9999999998 468999999999999999987764 5678899999999999995 558899999999999999
Q ss_pred CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe-eEEE-eCCCCeEEEEEcCCCCeE
Q 012679 297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-LNSV-DTGSQVCALLWNKNEREL 374 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l 374 (458)
+..... +..+ .|..+|..+.+-|. +.++++++ ...+++||+.+|.. +... .+...|+|+.+..++..|
T Consensus 184 R~~~~~-----v~el-nhg~pVe~vl~lps-gs~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 184 RSLTSR-----VVEL-NHGCPVESVLALPS-GSLIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred ccCCce-----eEEe-cCCCceeeEEEcCC-CCEEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceE
Confidence 987531 4444 68999999999994 56667764 46899999996654 3333 377889999999999999
Q ss_pred EEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
++ |.-|+.+++||+.+.+.+..+. ..++|.+++.+|+++.++.|..||.+.+=+...
T Consensus 254 lS--~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 254 LS--GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ee--cccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 99 6699999999999999998886 678999999999999999999999987764433
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=232.46 Aligned_cols=246 Identities=21% Similarity=0.325 Sum_probs=211.4
Q ss_pred CCCEEEEEEcCCCCE-EEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCee
Q 012679 183 NGPVTSVNWAPDGRH-IAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHI 259 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~-la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 259 (458)
.+.|++++|+|...+ +|+.+ .-.+.||+..+....+++.. ....|.++.| +|.+|++|+..|.|+++|+.+ ..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~sr-Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~i 102 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSR-FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVI 102 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHh-hccceeEEEeecCCeEEEccCCcCcEEEecccc-HHH
Confidence 467999999995543 55544 44799999998888887776 7888999999 699999999999999999654 445
Q ss_pred EEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC
Q 012679 260 VETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG 338 (458)
Q Consensus 260 ~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~ 338 (458)
+..+.+|+.+|..+.|+|+ +..|++|+.|+.+++||+.+... ...+.+|+..|.+.+|+|....++++|+ .
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v------~~~l~~htDYVR~g~~~~~~~hivvtGs--Y 174 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV------QAELSGHTDYVRCGDISPANDHIVVTGS--Y 174 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE------EEEecCCcceeEeeccccCCCeEEEecC--C
Confidence 7888999999999999995 56678899999999999988764 5678899999999999998889999987 9
Q ss_pred CCeEEEEECCCC-CeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-eeEEEeCCCCcEEEEEEcCCCC
Q 012679 339 DRCIKFWNTHTG-ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KMAELSGHTSRVLFMAQSPDGC 416 (458)
Q Consensus 339 d~~i~lwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~ 416 (458)
||+|++||+++. ..+.+++++.+|..+.+-|.|..+++++ .+.++|||+-+|. .+..+..|...|+|+++..++.
T Consensus 175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST 251 (487)
T ss_pred CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCc
Confidence 999999999987 8899999999999999999999999975 4689999999654 4555555999999999999999
Q ss_pred EEEEEeCCCcEEEEecCCCCcccccC
Q 012679 417 TVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 417 ~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
.|++|+-|+.|++||+.+-+.+....
T Consensus 252 rLlS~sLD~~VKVfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDTTNYKVVHSWK 277 (487)
T ss_pred eEeecccccceEEEEccceEEEEeee
Confidence 99999999999999987766555443
No 63
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.8e-28 Score=235.91 Aligned_cols=278 Identities=22% Similarity=0.387 Sum_probs=237.1
Q ss_pred ccceeeccCCCe--EEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGSSNV--LAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~~~~--la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.++++.-+++.+ +.|-.||.|+||+..++.. ..++.+|...|+++.|...|..||+|+.|+.|.+||+-...-+..
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~--~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r 144 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEI--LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR 144 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCce--eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence 455665555443 5566799999999998855 889999999999999999999999999999999999998888889
Q ss_pred ecCCCcccEEEEEe-C-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 221 LRGGHRSRVGSLAW-N-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 221 ~~~~~~~~v~~l~~-~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
+.+ |...|+..-| + .+++++.+.|+.|++||+.+.. +..+...|.++|.++++.+ +.+++++.|+.+++|++..
T Consensus 145 L~G-Hkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqh-Cf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~ 220 (888)
T KOG0306|consen 145 LRG-HKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQH-CFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAF 220 (888)
T ss_pred eec-chHHHhHHhccCCCeEEEEeccCceEEEEecccce-eeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeec
Confidence 998 9999999888 3 6899999999999999999765 4788889999999999987 7899999999999999811
Q ss_pred CCCC--------------------------------Cc------------------------------------------
Q 012679 299 ASSN--------------------------------SV------------------------------------------ 304 (458)
Q Consensus 299 ~~~~--------------------------------~~------------------------------------------ 304 (458)
..-. ..
T Consensus 221 ~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 221 EDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 0000 00
Q ss_pred ----------------------------------c-------------------ee---------eeeecccccceeEEE
Q 012679 305 ----------------------------------T-------------------QW---------LHRLEEHTSAVKAIA 322 (458)
Q Consensus 305 ----------------------------------~-------------------~~---------~~~~~~h~~~v~~l~ 322 (458)
. .. ...+.+|...|.+++
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence 0 00 022346888899999
Q ss_pred ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH 402 (458)
Q Consensus 323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h 402 (458)
+|.+ +.++++| ..+.|++|+..+.+|++++.++ .+.+..|.|.++++++ |...|.+.+||+.+...+.+.++|
T Consensus 381 vS~d-~~~~~Sg---a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~--G~k~Gel~vfdlaS~~l~Eti~AH 453 (888)
T KOG0306|consen 381 VSSD-SILLASG---AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVL--GTKNGELQVFDLASASLVETIRAH 453 (888)
T ss_pred eecC-ceeeeec---CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEE--eccCCceEEEEeehhhhhhhhhcc
Confidence 9984 6666766 5789999999999999999887 7888899999999999 779999999999999999999999
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 403 TSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
++.|+.++.+||+..++|||.|.+|++|++.
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~ 484 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFK 484 (888)
T ss_pred ccceeeeeecCCCCceEEecCCcEEEEEeEE
Confidence 9999999999999999999999999999975
No 64
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-28 Score=213.44 Aligned_cols=266 Identities=19% Similarity=0.339 Sum_probs=222.6
Q ss_pred CeEEEEcCCEEEEEECCCC----------CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679 153 NVLAIALGSTVYLWDASDG----------TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~----------~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~ 222 (458)
.+++|+....|+-+++.-. .+.+++.+..|.++|++++.+ |.++|+|+.|-+|+|||+.....+..+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 4788888888888876532 234477788999999999984 8999999999999999999999999988
Q ss_pred CCCcccEEEEEeCC----CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 223 GGHRSRVGSLAWNN----HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 223 ~~~~~~v~~l~~~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
. |.+.|+++.|.+ ..|++|+.||.|.+|+...- .++..+++|.+.|+.++.+|.+++-++.+.|+.++.||+-.
T Consensus 81 ~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 81 S-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred c-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 7 999999999953 37999999999999999865 46889999999999999999999999999999999999988
Q ss_pred CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEe
Q 012679 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH 378 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 378 (458)
++... +..+. +.+ ..+.|+|.|.++++.+ ...|-+|.+.+......+.....+.++.|... .++++
T Consensus 159 Gr~a~----v~~L~-~~a--t~v~w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~-~~L~v-- 224 (362)
T KOG0294|consen 159 GRVAF----VLNLK-NKA--TLVSWSPQGDHFVVSG----RNKIDIYQLDNASVFREIENPKRILCATFLDG-SELLV-- 224 (362)
T ss_pred Cccce----eeccC-Ccc--eeeEEcCCCCEEEEEe----ccEEEEEecccHhHhhhhhccccceeeeecCC-ceEEE--
Confidence 87632 22222 222 3389999887776664 46799999999888877777766777777644 45555
Q ss_pred cCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE--cCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 379 GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ--SPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 379 g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~--spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
|.+++.|.+||..+..+...+.+|..+|..+.+ .|++.+|+|++.||.|+|||+....
T Consensus 225 G~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 225 GGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 668999999999999999999999999999984 5688999999999999999998663
No 65
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=6.6e-30 Score=234.86 Aligned_cols=253 Identities=18% Similarity=0.363 Sum_probs=217.1
Q ss_pred EEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCC-ceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEE
Q 012679 176 LVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTA-NRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINN 251 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vw 251 (458)
++++.+|...|+++.|.| .+.+|++|+.|+.|+||++.. +++++++.+ |..+|.+++|+ +..+++++.|+.|++|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCeeeeeecceeeeee
Confidence 678899999999999999 899999999999999999976 889999998 99999999995 7899999999999999
Q ss_pred EccCCCeeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679 252 DVRVRDHIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330 (458)
Q Consensus 252 d~~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 330 (458)
|+++++.. ..+. ....++|+.|+||+ +.+++|+.|+.|+.||+++++. ++.+..|-+.|..+.|-+++...
T Consensus 286 DtETG~~~-~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv------vqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 286 DTETGQVL-SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV------VQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred ccccceEE-EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH------HHHHHhhhhheeeeEEccCCceE
Confidence 99999863 3332 24568899999998 8899999999999999999987 88899999999999999987766
Q ss_pred EEEeCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC---ceeeEEEeCCC--
Q 012679 331 LATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSHGFTQNQLTLWKYPS---MVKMAELSGHT-- 403 (458)
Q Consensus 331 l~s~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~---~~~~~~~~~h~-- 403 (458)
+.+. .|+.+++|+.+.+..++.+... ....++..+|+++.+++ -..++.|.+|.... ..+...++||.
T Consensus 358 issS---Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a--Qs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 358 ISSS---DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA--QSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred eeec---cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh--hccCceEEEEecccccccCHhhhhcceecc
Confidence 6654 8999999999998877766443 34668899999999998 55899999998653 23445677886
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 404 SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 404 ~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
+--..+.|||||.+|++|+.||.+.+||..+.....+..
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk 471 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK 471 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc
Confidence 446789999999999999999999999998777665544
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1e-28 Score=220.76 Aligned_cols=246 Identities=25% Similarity=0.431 Sum_probs=210.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe---C--CCeEEEEeCCCcEEEEEccC
Q 012679 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---N--NHILTTGGMDGLIINNDVRV 255 (458)
Q Consensus 181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~---~--~~~l~sg~~dg~i~vwd~~~ 255 (458)
.|.+.|.+|... ++++++|+.||.+++||. .|+....+.+ |.++|.+++| + ...|++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~G-ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVG-HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEec-CCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 478888888887 789999999999999995 5777778877 9999999999 2 35799999999999999887
Q ss_pred CCeeE---EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC-------------------CCcceeeeeecc
Q 012679 256 RDHIV---ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS-------------------NSVTQWLHRLEE 313 (458)
Q Consensus 256 ~~~~~---~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~-------------------~~~~~~~~~~~~ 313 (458)
+...+ ....||...|-++...++|..+++|+.|.+|.||+...... .....++..+.+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 65322 33449999999999999999999999999999999322111 112345778899
Q ss_pred cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM 393 (458)
Q Consensus 314 h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~ 393 (458)
|..+|.++.|++ ...+++++ .|.+|+.||+.++.++..+.++..+.++.++|..+.|++ |+.|..|++||.+++
T Consensus 259 Ht~~Vs~V~w~d--~~v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~--gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 259 HTEPVSSVVWSD--ATVIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLAS--GSSDRHIRLWDPRTG 332 (423)
T ss_pred cccceeeEEEcC--CCceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeee--cCCCCceeecCCCCC
Confidence 999999999998 56777776 999999999999999999999999999999998888888 779999999999865
Q ss_pred e---eeEEEeCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCC
Q 012679 394 V---KMAELSGHTSRVLFMAQSPD-GCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 394 ~---~~~~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
. ...++.+|.+.|.++.|+|. ...|++|+.|+++++||++...
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 3 45688999999999999995 4578999999999999998876
No 67
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=4.1e-28 Score=215.90 Aligned_cols=255 Identities=19% Similarity=0.299 Sum_probs=210.6
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV 253 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 253 (458)
+..+..|..+|.+++.+|+.+++|+|+.|..-.||++.++.....+.+ |...|+++.| ++.+|++|+.+|.|.||+.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 677889999999999999999999999999999999999998888887 9999999999 5899999999999999999
Q ss_pred cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333 (458)
Q Consensus 254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s 333 (458)
.++.. ...+...-..+.=+.|+|.+..|+.|+.||.+-+|.+.+... .+.+.+|+.++++-.|.|+|+.++.
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~------~kv~~Gh~~~ct~G~f~pdGKr~~t- 207 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL------CKVMSGHNSPCTCGEFIPDGKRILT- 207 (399)
T ss_pred ccCce-EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce------eeEecCCCCCcccccccCCCceEEE-
Confidence 98875 334444556788899999999999999999999999988654 7888999999999999999766655
Q ss_pred eCCCCCCeEEEEECCCCCeeEEEeCC-----------------------CCe----------------------------
Q 012679 334 GGGGGDRCIKFWNTHTGACLNSVDTG-----------------------SQV---------------------------- 362 (458)
Q Consensus 334 ~~g~~d~~i~lwd~~~~~~~~~~~~~-----------------------~~v---------------------------- 362 (458)
+. .||+|++||..+++++..+... .++
T Consensus 208 gy--~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~ 285 (399)
T KOG0296|consen 208 GY--DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL 285 (399)
T ss_pred Ee--cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence 33 8999999999999988776410 000
Q ss_pred -EEEEEcCC-CCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 363 -CALLWNKN-ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 363 -~~~~~s~~-~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
.++.+.|. ...-++++|+-||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.||.|+.||.+.+.....
T Consensus 286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~ 363 (399)
T KOG0296|consen 286 DESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFT 363 (399)
T ss_pred hhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEE
Confidence 01111110 011133458889999999999887776664 888899999998 67999999999999999999988766
Q ss_pred cCC
Q 012679 441 KSA 443 (458)
Q Consensus 441 ~~~ 443 (458)
...
T Consensus 364 y~G 366 (399)
T KOG0296|consen 364 YTG 366 (399)
T ss_pred Eec
Confidence 543
No 68
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8e-29 Score=241.98 Aligned_cols=250 Identities=18% Similarity=0.329 Sum_probs=219.3
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccC
Q 012679 178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRV 255 (458)
Q Consensus 178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~ 255 (458)
.++.....|..++|+|...+++++-.+|.|++||.+-+.++..|.. |.++|..++|+ ..++++|+.|-.|+||+...
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde-HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc-cCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 3455677899999999999999999999999999999999999998 99999999996 58999999999999999987
Q ss_pred CCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679 256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 256 ~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
..+ +.++.+|-..|..+.|++.-.+++++|.|.+|+||+..+.++ +..+.+|...|.|..|+| ...++++++
T Consensus 83 rrc-lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~------iavltGHnHYVMcAqFhp-tEDlIVSaS 154 (1202)
T KOG0292|consen 83 RRC-LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC------IAVLTGHNHYVMCAQFHP-TEDLIVSAS 154 (1202)
T ss_pred cee-hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce------EEEEecCceEEEeeccCC-ccceEEEec
Confidence 664 788999999999999999999999999999999999999888 899999999999999999 477888877
Q ss_pred CCCCCeEEEEECCCCC----------------------------eeE-EEe-CCCCeEEEEEcCCCCeEEEEecCCCCcE
Q 012679 336 GGGDRCIKFWNTHTGA----------------------------CLN-SVD-TGSQVCALLWNKNERELLSSHGFTQNQL 385 (458)
Q Consensus 336 g~~d~~i~lwd~~~~~----------------------------~~~-~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i 385 (458)
-|.+||+||+..-+ .++ .++ +...|+-++|+|.-..+++ |.+|.+|
T Consensus 155 --LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS--G~DDRqV 230 (1202)
T KOG0292|consen 155 --LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS--GADDRQV 230 (1202)
T ss_pred --ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe--cCCccee
Confidence 99999999985311 011 111 3346889999999999988 7799999
Q ss_pred EEEeCCCce--eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 386 TLWKYPSMV--KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 386 ~iwd~~~~~--~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
++|.+...+ .+.+..||.+.|.++-|+|....|++.|.|++|+|||+...+.+..
T Consensus 231 KlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 231 KLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred eEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee
Confidence 999987543 4567889999999999999999999999999999999987665544
No 69
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-26 Score=203.30 Aligned_cols=277 Identities=16% Similarity=0.245 Sum_probs=225.6
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec--CCeEEEEeCCCcee
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN--NCQVQLWDSTANRQ 217 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~--dg~v~iwd~~~~~~ 217 (458)
..+++++++. ..+++.+.|.++.|||..+++. +.++..+.-.|..+.|......++.++. |.+|+..++.+++.
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 3578888876 4567777888999999999987 6666666677899999887777777766 77999999999999
Q ss_pred eEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679 218 LRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295 (458)
Q Consensus 218 ~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd 295 (458)
++.+.+ |...|.+|+.+ ++.+++++.|++|++||++...+. ..+.... -..++|.|.|-++|++...+.|++||
T Consensus 93 lRYF~G-H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq-g~l~~~~--~pi~AfDp~GLifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 93 LRYFPG-HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ-GLLNLSG--RPIAAFDPEGLIFALANGSELIKLYD 168 (311)
T ss_pred EEEcCC-CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc-eEEecCC--CcceeECCCCcEEEEecCCCeEEEEE
Confidence 999998 99999999996 589999999999999999976653 3332222 33478999999999999988999999
Q ss_pred CCCCCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC----eEEEEEcCC
Q 012679 296 RSMASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ----VCALLWNKN 370 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~----v~~~~~s~~ 370 (458)
++........ ...+. +.....+.|.|+|+|+.+|++. ..+.+++.|.-+|..+.++..... ....+|.|+
T Consensus 169 ~Rs~dkgPF~--tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 169 LRSFDKGPFT--TFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred ecccCCCCce--eEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 9987443221 11222 4467789999999999999976 688999999999998888865322 357889999
Q ss_pred CCeEEEEecCCCCcEEEEeCCCceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
++++++ |..||.|.+|+++++.++..+++ +.+++.++.|+|.-..++| .+..+.+|=..
T Consensus 244 s~Fvl~--gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s--a~s~l~fw~p~ 303 (311)
T KOG1446|consen 244 SKFVLS--GSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS--ASSNLVFWLPD 303 (311)
T ss_pred CcEEEE--ecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeee--cCceEEEEecc
Confidence 999999 66899999999999999999998 7899999999998666654 55689999654
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=5.3e-28 Score=223.73 Aligned_cols=298 Identities=19% Similarity=0.301 Sum_probs=227.6
Q ss_pred CCCCCCCCceeeeCCCCCCccccceeec--cCCCeEEEEcCCEEEEEECCCCCe-----eeEEEecCCCCCEEEEEEcCC
Q 012679 122 RRHIPQSSERTLDAPDLVDDYYLNLLDW--GSSNVLAIALGSTVYLWDASDGTT-----SELVTVDDENGPVTSVNWAPD 194 (458)
Q Consensus 122 ~~~i~~~~~~~l~~~~~~~d~~~~~~~~--~~~~~la~~~d~~v~iwd~~~~~~-----~~~~~~~~h~~~V~~v~~s~~ 194 (458)
...||.+.|-.|... .. -+..+.. ++.++++|+.|..|++||...-.. ..+.-. ....|.+++|++.
T Consensus 152 ~~~IP~shEi~l~hg--tk--~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--E~h~i~sl~ys~T 225 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHG--TK--IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--ETHQINSLQYSVT 225 (641)
T ss_pred hhcCCccceEeccCC--ce--EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcc--cccccceeeecCC
Confidence 456787777665532 22 2444444 557899999999999999874321 112222 3456999999999
Q ss_pred CCEEEEEecCCeEEEEeCCCceeeEEecC-----------CCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeE
Q 012679 195 GRHIAIGLNNCQVQLWDSTANRQLRTLRG-----------GHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIV 260 (458)
Q Consensus 195 g~~la~g~~dg~v~iwd~~~~~~~~~~~~-----------~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~ 260 (458)
|..|++.+.....+|+|-...+.+...++ +|...++|.+|+ ...+++++.||++++||+.......
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 99999988888999999665554443332 699999999996 4789999999999999998654333
Q ss_pred EEEc-----ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc--ceeEEEecCCCCcEEEE
Q 012679 261 ETYR-----GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS--AVKAIAWCPFQSNLLAT 333 (458)
Q Consensus 261 ~~~~-----~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~ll~s 333 (458)
..++ +..-.++.++|++||++||+|+.||.|.+|+......... ...-.+|.. .|++|+|+++|+.|+.-
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~---~~vk~AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV---MKVKDAHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc---eEeeeccCCCCceeEEEeccccchhhhc
Confidence 3332 3445789999999999999999999999999865544222 334456777 89999999987776654
Q ss_pred eCCCCCCeEEEEECCCCC-eeEEE---eCCCCeEEEEEcCCCCeEEEEec----CCCCcEEEEeCCCceeeEEEeCCCCc
Q 012679 334 GGGGGDRCIKFWNTHTGA-CLNSV---DTGSQVCALLWNKNERELLSSHG----FTQNQLTLWKYPSMVKMAELSGHTSR 405 (458)
Q Consensus 334 ~~g~~d~~i~lwd~~~~~-~~~~~---~~~~~v~~~~~s~~~~~l~~~~g----~~d~~i~iwd~~~~~~~~~~~~h~~~ 405 (458)
| .|+++++||++..+ ++... ....+-+.++|+|+.+.|++.+. ...|.+.+||..+.+.+..+.-.+..
T Consensus 383 g---~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aS 459 (641)
T KOG0772|consen 383 G---FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTAS 459 (641)
T ss_pred c---CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCce
Confidence 4 89999999999754 44443 23456788999999999998542 23568999999999999999888888
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 406 VLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 406 V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
|..+.|+|.=+.|..|+.||++++|-
T Consensus 460 vv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 460 VVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEEeecchhhheeeecCCCceEEEE
Confidence 99999999888899999999999874
No 71
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=9.3e-28 Score=209.26 Aligned_cols=247 Identities=23% Similarity=0.424 Sum_probs=205.3
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc------------------eeeEEecCCCcccEEEEEeCC-
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN------------------RQLRTLRGGHRSRVGSLAWNN- 236 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~------------------~~~~~~~~~~~~~v~~l~~~~- 236 (458)
...+..|..++.+.+|++||.++|+|+.|..|+|.|++.. -.++++.. |...|+++.|++
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~FHPr 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLDFHPR 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCcccceeecch
Confidence 4556789999999999999999999999999999998621 24566766 999999999975
Q ss_pred -CeEEEEeCCCcEEEEEccCCCe--eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc
Q 012679 237 -HILTTGGMDGLIINNDVRVRDH--IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313 (458)
Q Consensus 237 -~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 313 (458)
.+|++|++|++|+++|+..... ..+.+ ....+|.++.|+|.|.+|+.|..-.++++||+++.++-.. ...-..
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs---anPd~q 259 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS---ANPDDQ 259 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee---cCcccc
Confidence 7999999999999999975431 11122 3456899999999999999999999999999998766211 123457
Q ss_pred cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD---TGSQVCALLWNKNERELLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 314 h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~ 390 (458)
|.+.|+++.+++. ..+.++++ .||.|++||--+++|+.++. .++.||+..|..++++++++ +.|..+++|.+
T Consensus 260 ht~ai~~V~Ys~t-~~lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS--G~DS~vkLWEi 334 (430)
T KOG0640|consen 260 HTGAITQVRYSST-GSLYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS--GKDSTVKLWEI 334 (430)
T ss_pred cccceeEEEecCC-ccEEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec--CCcceeeeeee
Confidence 9999999999995 67788877 99999999999999999885 35789999999999999995 38999999999
Q ss_pred CCceeeEEE-------------------------------------------------eCCCCcEEEEEEcCCCCEEEEE
Q 012679 391 PSMVKMAEL-------------------------------------------------SGHTSRVLFMAQSPDGCTVASA 421 (458)
Q Consensus 391 ~~~~~~~~~-------------------------------------------------~~h~~~V~~l~~spdg~~l~s~ 421 (458)
.+++.+.++ .+|.+.+..+.-||.+..++||
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTc 414 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTC 414 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeee
Confidence 777655442 2678888899999999999999
Q ss_pred eCCCcEEEEec
Q 012679 422 AADETLRFWNV 432 (458)
Q Consensus 422 s~Dg~i~iW~~ 432 (458)
+.|-.+|+|.-
T Consensus 415 sdD~raRFWyr 425 (430)
T KOG0640|consen 415 SDDFRARFWYR 425 (430)
T ss_pred cccceeeeeee
Confidence 99999999964
No 72
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.7e-26 Score=225.88 Aligned_cols=245 Identities=18% Similarity=0.302 Sum_probs=187.3
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEeCCCceee----------E---EecCCCcccEEEEEeC---CCeEEEEeCCCcEE
Q 012679 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL----------R---TLRGGHRSRVGSLAWN---NHILTTGGMDGLII 249 (458)
Q Consensus 186 V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~----------~---~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~ 249 (458)
|.....++++..++++..+.....|+...+..+ . .+.+ |.+.|.+++|+ +.+|++|+.||+|+
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G-H~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG-QEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeC-CCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 444555556555555555555556654333221 1 2444 99999999995 47899999999999
Q ss_pred EEEccCCC------eeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEE
Q 012679 250 NNDVRVRD------HIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA 322 (458)
Q Consensus 250 vwd~~~~~------~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~ 322 (458)
+||+.... ..+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+..+.. +..+..|...|.+++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~------~~~l~~h~~~V~sla 175 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA------VEVIKCHSDQITSLE 175 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE------EEEEcCCCCceEEEE
Confidence 99997643 2456788999999999999975 7999999999999999988765 677888999999999
Q ss_pred ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC--CeEEEEEcCCCCeEEEEec--CCCCcEEEEeCCCcee-eE
Q 012679 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS--QVCALLWNKNERELLSSHG--FTQNQLTLWKYPSMVK-MA 397 (458)
Q Consensus 323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~g--~~d~~i~iwd~~~~~~-~~ 397 (458)
|+|++ .++++++ .|+.|++||+++++.+..+..+. .+..+.|.+++..+++++. ..|+.|++||+++... +.
T Consensus 176 ~spdG-~lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 176 WNLDG-SLLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EECCC-CEEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 99975 5666666 89999999999999888876543 3457889999888876532 3589999999987653 33
Q ss_pred EEeCC-CCcEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCcccc
Q 012679 398 ELSGH-TSRVLFMAQSPDGCTVASAA-ADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 398 ~~~~h-~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~~~~~~~ 440 (458)
....+ ...+....|++++.+|++++ .|+.|++||+.++.....
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 33333 34566678999999999888 599999999998765543
No 73
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.5e-26 Score=228.22 Aligned_cols=261 Identities=15% Similarity=0.240 Sum_probs=190.8
Q ss_pred EEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCce--------eeEEecCCCcc
Q 012679 157 IALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTANR--------QLRTLRGGHRS 227 (458)
Q Consensus 157 ~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~~--------~~~~~~~~~~~ 227 (458)
++..+.|.+|+..... .+..+.+|.+.|.+++|+|+ +.+||+|+.||.|+|||+.++. .+..+.+ |..
T Consensus 50 GG~~gvI~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKK 126 (568)
T ss_pred CCceeEEEeeecCCCc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCC
Confidence 4456789999876653 47788999999999999996 7899999999999999997642 2334555 999
Q ss_pred cEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCc
Q 012679 228 RVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304 (458)
Q Consensus 228 ~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~ 304 (458)
.|.+++|++ .+|++++.|+.|++||++++.. ...+. |...|.+++|+|+|.+|++++.|+.|+|||++++..
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~--- 201 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI--- 201 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE---
Confidence 999999974 3568999999999999998765 33443 567899999999999999999999999999998766
Q ss_pred ceeeeeecccccceeEE-----EecCCCCcEEEEeCC-CCCCeEEEEECCC-CCeeEEEeCCCCeE--EEEEcCC-CCeE
Q 012679 305 TQWLHRLEEHTSAVKAI-----AWCPFQSNLLATGGG-GGDRCIKFWNTHT-GACLNSVDTGSQVC--ALLWNKN-EREL 374 (458)
Q Consensus 305 ~~~~~~~~~h~~~v~~l-----~~~p~~~~ll~s~~g-~~d~~i~lwd~~~-~~~~~~~~~~~~v~--~~~~s~~-~~~l 374 (458)
+..+.+|.+.+.+. .|++++..++++|.. ..++.|+|||+++ ++++..+....... ...|.++ +.++
T Consensus 202 ---i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 202 ---ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred ---EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 67788888765433 345776666666531 1225899999995 66776665544333 2344444 5566
Q ss_pred EEEecCCCCcEEEEeCCCceeeEEEe--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 375 LSSHGFTQNQLTLWKYPSMVKMAELS--GHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
++ |..|+.|++|++..+. +..+. .+..++.+++|.|.... =...-+..|++.+.
T Consensus 279 ls--GkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~~--dv~~cEi~R~~kl~ 334 (568)
T PTZ00420 279 LI--GKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQIC--DVYKCEIGRVYKNE 334 (568)
T ss_pred EE--EECCCeEEEEEccCCc-EEeecccccCCCccceEEcccccc--CchhhhHhHHhhhc
Confidence 55 5689999999997653 22232 25677889999996431 11222344555554
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.6e-27 Score=236.43 Aligned_cols=287 Identities=21% Similarity=0.372 Sum_probs=228.3
Q ss_pred cccceeeccC--CCeEEEE--cCCEEEEEECCC---------C-CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeE
Q 012679 142 YYLNLLDWGS--SNVLAIA--LGSTVYLWDASD---------G-TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQV 207 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~--~d~~v~iwd~~~---------~-~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v 207 (458)
..+-.++.++ ..++++| .|+.+.||+.+. . -...++++..|.+.|+|+.|+|||++||+|++|+.|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 3455677776 4577777 788888998652 1 124577888999999999999999999999999999
Q ss_pred EEEeCCC------------------ceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccc
Q 012679 208 QLWDSTA------------------NRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHN 267 (458)
Q Consensus 208 ~iwd~~~------------------~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~ 267 (458)
.||+... .+.+..+.+ |...|..++|+ +.+|++++.|+.|.+|+.++. ..++.+.+|.
T Consensus 94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~ 171 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQ 171 (942)
T ss_pred EEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeeccc
Confidence 9998662 134556666 99999999995 799999999999999999988 5689999999
Q ss_pred cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc------ccceeEEEecCCCCcEEEEeCC-CCCC
Q 012679 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH------TSAVKAIAWCPFQSNLLATGGG-GGDR 340 (458)
Q Consensus 268 ~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~p~~~~ll~s~~g-~~d~ 340 (458)
+.|.++.|.|-|+|||+-+.|++|+||++..-.. .+.+.++ ..-+..+.|+|||.++.+..+- ..-.
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i------~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~ 245 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI------EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS 245 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEccccee------eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence 9999999999999999999999999999766443 3333332 3457889999998777654330 1234
Q ss_pred eEEEEECCCCCeeEEE-eCCCCeEEEEEcCC---------------CCeEEEEecCCCCcEEEEeCCCceeeEEEeC-CC
Q 012679 341 CIKFWNTHTGACLNSV-DTGSQVCALLWNKN---------------ERELLSSHGFTQNQLTLWKYPSMVKMAELSG-HT 403 (458)
Q Consensus 341 ~i~lwd~~~~~~~~~~-~~~~~v~~~~~s~~---------------~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~-h~ 403 (458)
++.|.+-.+.+.-..+ .|..++..+.|+|. ..|.+++.|..|+.|.||.....+++..... ..
T Consensus 246 ~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 246 TIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred eeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 6888888777754444 56778999999872 1234666788999999999988888765532 34
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 404 SRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 404 ~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
..|..++|+|||..|+.++.||+|.+..+.+.+
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 679999999999999999999999999997643
No 75
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=228.12 Aligned_cols=276 Identities=21% Similarity=0.286 Sum_probs=225.8
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEE-----------------------------------EecCCCCCEEEEEEcCCCC
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELV-----------------------------------TVDDENGPVTSVNWAPDGR 196 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~-----------------------------------~~~~h~~~V~~v~~s~~g~ 196 (458)
.-+++++.|++|++||++.+....+. ..-+....+.+++.+|+|+
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 44889999999999998763211110 0112345699999999999
Q ss_pred EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC-----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceE
Q 012679 197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271 (458)
Q Consensus 197 ~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 271 (458)
+||+|..-|+++|||+...+....+.. |...|.|+.++ .++|+++++|..|+|||+...-.++.++.+|...|+
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 999999999999999999988888887 99999999994 478999999999999999887778899999999999
Q ss_pred eEEEcCCC--CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 272 GLKWSASG--QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 272 ~l~~spd~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
+++|.-+| ..++++|.|..|.+--.+...... ..+..+-.-....+..++..|..+ ++++++ .|+.|+|||+.+
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~-~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~c--QDrnirif~i~s 627 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGR-LFPRHTQTLSKTTLYDMAVDPTSK-LVVTVC--QDRNIRIFDIES 627 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCce-eccccccccccceEEEeeeCCCcc-eEEEEe--cccceEEEeccc
Confidence 99998877 678999999888654333222110 000111112245688999999644 555554 999999999999
Q ss_pred CCeeEEEeC----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679 350 GACLNSVDT----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADE 425 (458)
Q Consensus 350 ~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 425 (458)
|+..+.++. .+....+...|.|.|+++++ .|.++.++|+.++++++++.||...|+.+.|.+|.+.|++++.||
T Consensus 628 gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc--sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg 705 (1080)
T KOG1408|consen 628 GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC--SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG 705 (1080)
T ss_pred cceeeeecccccCCCceEEEEECCCccEEEEee--cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCc
Confidence 999999964 35688899999999999965 899999999999999999999999999999999999999999999
Q ss_pred cEEEEecCC
Q 012679 426 TLRFWNVFG 434 (458)
Q Consensus 426 ~i~iW~~~~ 434 (458)
.|.||.+..
T Consensus 706 CIFvW~lp~ 714 (1080)
T KOG1408|consen 706 CIFVWKLPL 714 (1080)
T ss_pred eEEEEECch
Confidence 999999864
No 76
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=214.85 Aligned_cols=255 Identities=17% Similarity=0.271 Sum_probs=215.1
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIIN 250 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~v 250 (458)
...+..|.+.|.-+.||++|+|||+++.|.+..+|++.... ..+++.+ |..+|..+.|+ .++|++++.+..+.+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCCeEEecCchHheee
Confidence 34567899999999999999999999999999999876544 4666766 99999999995 589999999999999
Q ss_pred EEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc-cccceeEEEecCCCCc
Q 012679 251 NDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSN 329 (458)
Q Consensus 251 wd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ 329 (458)
||+.++.....--.+|...+.+++|.|||..+++|+.|++|..||+..... ...++ ....|.+++..+||..
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-------~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-------GNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-------hcccccccceeEEEEEcCCCcE
Confidence 999998763333345668899999999999999999999999999876542 12222 2356899999999999
Q ss_pred EEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc--EE
Q 012679 330 LLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VL 407 (458)
Q Consensus 330 ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~--V~ 407 (458)
+++++ .|..|++++..+......+....++++++.+.+++++++ .-.+..+.+||+.....+..+.||... |.
T Consensus 369 vl~v~---~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 369 VLLVT---VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEe---cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHhhcccccceEE
Confidence 99987 799999999999888888888999999999999999998 458999999999999999999999754 44
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEecCCCCcccccCC
Q 012679 408 FMAQSP-DGCTVASAAADETLRFWNVFGAPQVISKSA 443 (458)
Q Consensus 408 ~l~~sp-dg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~ 443 (458)
.-+|-- +..++++|++|+.|+||+-..+..+.....
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 556654 558999999999999999998887766554
No 77
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-26 Score=224.83 Aligned_cols=274 Identities=20% Similarity=0.315 Sum_probs=236.3
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCC-cccEE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGH-RSRVG 230 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~-~~~v~ 230 (458)
+.++.|+.+|.+.|||+.+++. ++++.++...|+++.-+|-=..+|+|..+|+|.|++++.++.+.+++ | .++|+
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~--v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk--~d~g~Vt 248 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKV--VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK--QDWGRVT 248 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcE--EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE--cccccee
Confidence 6789999999999999999998 89999999999999999988899999999999999999999999999 6 49999
Q ss_pred EEEe--CC-CeEEEEeCCCcEEEEEccCCCee------------------------------------------------
Q 012679 231 SLAW--NN-HILTTGGMDGLIINNDVRVRDHI------------------------------------------------ 259 (458)
Q Consensus 231 ~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~~------------------------------------------------ 259 (458)
+++| +| .++++|+..|.+.+||++.....
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR 328 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLR 328 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhee
Confidence 9999 45 67888888899999998753211
Q ss_pred --------------------------------------------------------------------------------
Q 012679 260 -------------------------------------------------------------------------------- 259 (458)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (458)
T Consensus 329 ~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE 408 (910)
T KOG1539|consen 329 SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE 408 (910)
T ss_pred eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh
Confidence
Q ss_pred ---------------EEE-----------Eccc------ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee
Q 012679 260 ---------------VET-----------YRGH------NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW 307 (458)
Q Consensus 260 ---------------~~~-----------~~~h------~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 307 (458)
..+ ...+ ...+++++.++.|++.+.|...|.|-+|++.++-.
T Consensus 409 ~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------ 482 (910)
T KOG1539|consen 409 KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------ 482 (910)
T ss_pred hhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee------
Confidence 000 0011 14567778888899999999999999999988765
Q ss_pred eeee---cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCc
Q 012679 308 LHRL---EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384 (458)
Q Consensus 308 ~~~~---~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~ 384 (458)
...+ ..|..+|+.++...- +.++++++ .+|.+++||..+...+..+..+..+..+.++.....++++ .+|-.
T Consensus 483 r~sf~~~~ah~~~V~gla~D~~-n~~~vsa~--~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~--~ddf~ 557 (910)
T KOG1539|consen 483 RKSFGDSPAHKGEVTGLAVDGT-NRLLVSAG--ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA--LDDFS 557 (910)
T ss_pred ecccccCccccCceeEEEecCC-CceEEEcc--CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh--cCcee
Confidence 4444 479999999999874 45566655 8999999999999999999999999999999999988884 47899
Q ss_pred EEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 385 i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
|.++|..+.+.+.++.||.++|++++|||||++|++++.|++|++||+-++..+--
T Consensus 558 I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 558 IRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred EEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence 99999999999999999999999999999999999999999999999988876544
No 78
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=3.5e-27 Score=215.83 Aligned_cols=245 Identities=25% Similarity=0.483 Sum_probs=203.3
Q ss_pred CCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCceee----------EEecCCCcccEEEEEeC---CCeEEEEeCCC
Q 012679 181 DENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTANRQL----------RTLRGGHRSRVGSLAWN---NHILTTGGMDG 246 (458)
Q Consensus 181 ~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~~~~----------~~~~~~~~~~v~~l~~~---~~~l~sg~~dg 246 (458)
.|.+.|+.+.+-|. ...+|+++..+.|.|||.....-. ..+.+ |...-.+|+|+ ...|++|+.|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g-H~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG-HEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe-ecccccccccccccceeEeeccCCC
Confidence 58899999999995 457777889999999997643211 24555 88878889996 47899999999
Q ss_pred cEEEEEccCCCe------eEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccccee
Q 012679 247 LIINNDVRVRDH------IVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK 319 (458)
Q Consensus 247 ~i~vwd~~~~~~------~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 319 (458)
.|++||+..... ....+.+|...|..++|++ +..+|++++.|+.+.|||+++. . .++.+...+|.+.|.
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~---~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-T---SKPSHSVKAHSAEVN 276 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-C---CCCcccccccCCcee
Confidence 999999976543 3467789999999999999 5678899999999999999963 1 123667789999999
Q ss_pred EEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc----
Q 012679 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM---- 393 (458)
Q Consensus 320 ~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~---- 393 (458)
|++|+|.+.++||+|+ .|++|.+||+++.. ++.++. +...|..+.|+|+...+++++| .|+.+.|||+..-
T Consensus 277 ~~~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EEEeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEEEecccccccc
Confidence 9999999999999987 99999999999854 556664 4567999999999999998877 8999999999642
Q ss_pred ----------eeeEEEeCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEecC
Q 012679 394 ----------VKMAELSGHTSRVLFMAQSPDGC-TVASAAADETLRFWNVF 433 (458)
Q Consensus 394 ----------~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~~~ 433 (458)
+.+..-.||+..|..+.|+|+.. .|+|++.|+.+.||+..
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 23455679999999999999765 57888999999999986
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.1e-26 Score=198.28 Aligned_cols=252 Identities=21% Similarity=0.334 Sum_probs=211.2
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec-CCCcccEEEEEeC---CCeEEEEeCCCcEEEEE
Q 012679 177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR-GGHRSRVGSLAWN---NHILTTGGMDGLIINND 252 (458)
Q Consensus 177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd 252 (458)
..+.+|...|.+|+|+-+|..|++|+.|+++.+|+++..+...... .+|.+.|-.++|+ +..+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3456788899999999999999999999999999998876554433 2488999999994 68999999999999999
Q ss_pred ccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679 253 VRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332 (458)
Q Consensus 253 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~ 332 (458)
++...+. .......+. .-+.|+|+|++++.++.|..|.+.|.++.+. +.. ......+..++|+-.+..+++
T Consensus 94 ~r~~k~~-~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~------~~~-~~~~~e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 94 IRSGKCT-ARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKI------VNE-EQFKFEVNEISWNNSNDLFFL 164 (313)
T ss_pred eccCcEE-EEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccce------eeh-hcccceeeeeeecCCCCEEEE
Confidence 9988764 333333333 3588999999999999999999999988765 222 234556788999965555555
Q ss_pred EeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679 333 TGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ 411 (458)
Q Consensus 333 s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 411 (458)
+. ..|+|.|.....-+++.+++. .....++.|+|+|+++++ |..|-.+.+||+...-++..+..+.-+|..+.|
T Consensus 165 t~---GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~--GsADAlvSLWD~~ELiC~R~isRldwpVRTlSF 239 (313)
T KOG1407|consen 165 TN---GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFAT--GSADALVSLWDVDELICERCISRLDWPVRTLSF 239 (313)
T ss_pred ec---CCceEEEEeccccccccccccCCcceEEEEECCCCceEee--ccccceeeccChhHhhhheeeccccCceEEEEe
Confidence 54 479999999999999999865 567889999999999999 779999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 412 SPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 412 spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
|.||++||+|++|-.|-|=++.++.++.+..
T Consensus 240 S~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 240 SHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred ccCcceeeccCccceEEeEecccCCeEEEee
Confidence 9999999999999999888888888776644
No 80
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.9e-27 Score=203.42 Aligned_cols=270 Identities=19% Similarity=0.327 Sum_probs=228.0
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC------CC-----------
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS------TA----------- 214 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~------~~----------- 214 (458)
..+-+++.|.+.+||.+++|.+ +.++.+|.+.|.+|+|++.+.++++++.|++..||.. ..
T Consensus 161 pi~gtASADhTA~iWs~Esg~C--L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGAC--LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred cceeecccccceeEEeeccccc--eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 3456677799999999999998 8999999999999999999999999999999999951 11
Q ss_pred -------------------c----eeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc
Q 012679 215 -------------------N----RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE 269 (458)
Q Consensus 215 -------------------~----~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~ 269 (458)
+ ..+..+.+ |.+.|.+..| .+..+++++.|.+..+||++++.. +..+.+|..+
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~-v~~LtGHd~E 316 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV-VNILTGHDSE 316 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCce-eccccCcchh
Confidence 0 02334444 8999999999 689999999999999999998874 7899999999
Q ss_pred eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
.+.++-+|..+++++.+.|-+.++||++..- ..+..|++|...|+++.|.-+ .-+++|+ .|.+|++||+++
T Consensus 317 LtHcstHptQrLVvTsSrDtTFRLWDFReaI-----~sV~VFQGHtdtVTS~vF~~d--d~vVSgS--DDrTvKvWdLrN 387 (481)
T KOG0300|consen 317 LTHCSTHPTQRLVVTSSRDTTFRLWDFREAI-----QSVAVFQGHTDTVTSVVFNTD--DRVVSGS--DDRTVKVWDLRN 387 (481)
T ss_pred ccccccCCcceEEEEeccCceeEeccchhhc-----ceeeeecccccceeEEEEecC--CceeecC--CCceEEEeeecc
Confidence 9999999999999999999999999998432 227789999999999999874 4455655 999999999998
Q ss_pred C-CeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee----EEEeCCCCcEEEEEEcCCC--CEEEEEe
Q 012679 350 G-ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM----AELSGHTSRVLFMAQSPDG--CTVASAA 422 (458)
Q Consensus 350 ~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~----~~~~~h~~~V~~l~~spdg--~~l~s~s 422 (458)
. .++.++...++++.++.+..+..|+.-+ ++.+|++||+.....- ..-++|...|+|++|..+. .-|+++|
T Consensus 388 MRsplATIRtdS~~NRvavs~g~~iIAiPh--DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcG 465 (481)
T KOG0300|consen 388 MRSPLATIRTDSPANRVAVSKGHPIIAIPH--DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCG 465 (481)
T ss_pred ccCcceeeecCCccceeEeecCCceEEecc--CCceEEEEecCCCccccCCcccccccceeeeeeeccccCccccccccc
Confidence 6 4788999999999999999999999855 7889999999754321 1346899999999998643 4588999
Q ss_pred CCCcEEEEecCCCC
Q 012679 423 ADETLRFWNVFGAP 436 (458)
Q Consensus 423 ~Dg~i~iW~~~~~~ 436 (458)
.|..+.=|++..+.
T Consensus 466 FDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 466 FDRMVAGWKINTPT 479 (481)
T ss_pred ccceeeeeEecccC
Confidence 99999999987543
No 81
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.6e-27 Score=208.93 Aligned_cols=247 Identities=17% Similarity=0.278 Sum_probs=208.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC-------CCcccEEEEEe--CCCeEEEEeCCCcEEEEE
Q 012679 182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG-------GHRSRVGSLAW--NNHILTTGGMDGLIINND 252 (458)
Q Consensus 182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~-------~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd 252 (458)
....+.|..|+|||+||++|+.||-|.+||..+|+..+.++- -+..+|.|++| +...|++|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 456789999999999999999999999999999986554431 27789999999 468999999999999999
Q ss_pred ccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679 253 VRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332 (458)
Q Consensus 253 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~ 332 (458)
++++.++.+.-..|+..|+++.|+.|+..+++++.|.+++|.-+.+++. +..+.+|...|+...|.++|..++.
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~------LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC------LKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh------HHHhcCccccccceEEcCCCCeEEE
Confidence 9999875555559999999999999999999999999999999999988 8899999999999999998877766
Q ss_pred EeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC---CCCcE
Q 012679 333 TGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG---HTSRV 406 (458)
Q Consensus 333 s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~---h~~~V 406 (458)
+. .||+|++|+..+.+|+.++.. ..+|.++..-|....-++.+ ...++|.|.++. ++.+..+.. ..+..
T Consensus 366 aS---sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC-Nrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 366 AS---SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC-NRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred ec---CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE-cCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 54 799999999999999999865 34688888888765544443 367888888874 566666642 23556
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 012679 407 LFMAQSPDGCTVASAAADETLRFWNVFGAPQVI 439 (458)
Q Consensus 407 ~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~ 439 (458)
.+.+.||.|.++...+.|+.++.|.+..+....
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceee
Confidence 678899999999999999999999998776543
No 82
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.7e-28 Score=214.69 Aligned_cols=245 Identities=18% Similarity=0.319 Sum_probs=215.5
Q ss_pred EEEecCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEcc
Q 012679 176 LVTVDDENGPVTSVNWAPDG-RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR 254 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g-~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 254 (458)
+..+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.+.++..++.. |.+.|..|+++...+++++.|.+|+.|-+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQTSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec-ccCceeeEEecccceEEecCCcceeeeecc
Confidence 45668999999999999976 7899999999999999999999999998 999999999998999999999999999987
Q ss_pred CCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679 255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG 334 (458)
Q Consensus 255 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~ 334 (458)
.. +..++.+ ...+.++.-+..+..+|+||. .|.|||..-..+ +..+.-....|.++.|+|....+|+++
T Consensus 138 ~~--p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~P------v~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 138 GP--PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNP------VSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred CC--cceeeec-cccccccccccccccccccCc--eeeecccccCCc------cceeecCCCceeEEecCCCcchheeee
Confidence 64 3455544 456778888888889999986 599999877665 777777778899999999999999998
Q ss_pred CCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-eeeEEEeCCCCcEEEEEEcC
Q 012679 335 GGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-VKMAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 335 ~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-~~~~~~~~h~~~V~~l~~sp 413 (458)
+ .|+.|.+||++.+.+++.+-....-+.++|+|.+-.+++ |.+|..++.||++.. +++....+|.+.|.+++|||
T Consensus 207 ~--sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~--a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 207 A--SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVA--ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred c--cCCceEEEecccCCccceeeeeccccceecCccccceee--ccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 7 999999999999999999988889999999995544444 779999999999876 46777889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCC
Q 012679 414 DGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 414 dg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
.|+-+++||.|.+|+||.+..+.
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred CcchhccccccceEEEeecCCCc
Confidence 99999999999999999997654
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=9e-26 Score=192.61 Aligned_cols=274 Identities=16% Similarity=0.294 Sum_probs=229.4
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
.+..+.|+. ..++.++.|+++.+|+++......-....+|.+.|-.++|+| ....|++++.|.+|++||+..+++..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 356788875 679999999999999999886655556778999999999998 56789999999999999999999999
Q ss_pred EecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 220 TLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
.+.. ....+. +.| ++.+++.++.|..|...|.++.+. ..-......+..+.|+-++.+++.....|.|.|....
T Consensus 102 ~i~~-~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~--~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 102 RIET-KGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKI--VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred Eeec-cCcceE-EEEcCCCCEEEEecCcccEEEEEecccce--eehhcccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 8885 333333 444 689999999999999999987653 2223345678889999888887777777999999887
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEE
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLS 376 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 376 (458)
..+. ++.+++|.....||.|+|+|. .+|+|+ .|..+.+||+...-|++.+. ..-+|..+.|+.+|++|++
T Consensus 178 sLkp------v~si~AH~snCicI~f~p~Gr-yfA~Gs--ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 178 SLKP------VQSIKAHPSNCICIEFDPDGR-YFATGS--ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS 248 (313)
T ss_pred cccc------ccccccCCcceEEEEECCCCc-eEeecc--ccceeeccChhHhhhheeeccccCceEEEEeccCcceeec
Confidence 6655 899999999999999999755 566665 99999999999999999885 4678999999999999999
Q ss_pred EecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEec
Q 012679 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD---------ETLRFWNV 432 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---------g~i~iW~~ 432 (458)
|.+|..|-|=++++|..+.+++ +.++...++|+|...+||-++.| |+|++|-+
T Consensus 249 --aSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 249 --ASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred --cCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 6699999999999999999986 78889999999999999988765 56666654
No 84
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=2.3e-25 Score=221.31 Aligned_cols=223 Identities=17% Similarity=0.284 Sum_probs=173.7
Q ss_pred EecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCe-------eEEEEcccccce
Q 012679 201 GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDH-------IVETYRGHNQEV 270 (458)
Q Consensus 201 g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~-------~~~~~~~h~~~v 270 (458)
|+.+|.|++|+......+..+.+ |...|.+++|+ +.+|++|+.||.|++||+.+... .+..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 56678999999888777888887 99999999996 47999999999999999976431 234678999999
Q ss_pred EeEEEcCCCCE-EEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 271 CGLKWSASGQQ-LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 271 ~~l~~spd~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
.+++|+|++.. |++++.|++|+|||++.+.. +..+. |...|.+++|+|++. ++++++ .|+.|++||+++
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~------~~~i~-~~~~V~SlswspdG~-lLat~s--~D~~IrIwD~Rs 198 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR------AFQIN-MPKKLSSLKWNIKGN-LLSGTC--VGKHMHIIDPRK 198 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcE------EEEEe-cCCcEEEEEECCCCC-EEEEEe--cCCEEEEEECCC
Confidence 99999999876 57899999999999988764 44443 567899999999866 455554 899999999999
Q ss_pred CCeeEEEeCCC-Ce-----EEEEEcCCCCeEEEEecCCC---CcEEEEeCCC-ceeeEEEe--CCCCcEEEEEEcCCCCE
Q 012679 350 GACLNSVDTGS-QV-----CALLWNKNERELLSSHGFTQ---NQLTLWKYPS-MVKMAELS--GHTSRVLFMAQSPDGCT 417 (458)
Q Consensus 350 ~~~~~~~~~~~-~v-----~~~~~s~~~~~l~~~~g~~d---~~i~iwd~~~-~~~~~~~~--~h~~~V~~l~~spdg~~ 417 (458)
++.+.++..+. .+ ....|++++.+++++ |+++ ++|+|||++. .+++..+. .+.+.+......++|.+
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt-G~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l 277 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST-GFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLI 277 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE-EcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCE
Confidence 99988886543 22 223356888888876 3333 4799999985 45555443 33344444455667999
Q ss_pred EEEEeCCCcEEEEecCCC
Q 012679 418 VASAAADETLRFWNVFGA 435 (458)
Q Consensus 418 l~s~s~Dg~i~iW~~~~~ 435 (458)
+++|+.|++|++|++..+
T Consensus 278 ~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 278 YLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEEECCCeEEEEEccCC
Confidence 999999999999999765
No 85
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.6e-27 Score=226.62 Aligned_cols=286 Identities=22% Similarity=0.363 Sum_probs=229.3
Q ss_pred cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEe--cCC---CCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCC--
Q 012679 144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTV--DDE---NGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTA-- 214 (458)
Q Consensus 144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~--~~h---~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~-- 214 (458)
.|.++-++ .+-++++....+.||.+.......-+.+ ... .-.+..|+|.. +.++||+++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 44555555 3456666677888887765432222222 111 12356788886 678999999999999999987
Q ss_pred -ceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCC
Q 012679 215 -NRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDN 289 (458)
Q Consensus 215 -~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg 289 (458)
.+.+..|.. |.-.+.++.|+ +++|++|+.||.|++||++.... ..++.+....|..++|+| .+.+|+++...|
T Consensus 122 rnk~l~~f~E-H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 122 RNKLLTVFNE-HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cchhhhHhhh-hccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccchhhhceeeccCCCceEEEecCCc
Confidence 566666776 99999999995 79999999999999999997765 566777888999999999 688999999999
Q ss_pred cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC--eeEEEeCCCCeEEEEE
Q 012679 290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA--CLNSVDTGSQVCALLW 367 (458)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~--~~~~~~~~~~v~~~~~ 367 (458)
.+++||++.... +..++.+|.++|.++.|+| ...+||+|| .|+.|+|||+.+++ .+.++.+..++..+.|
T Consensus 200 ~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwhP-nr~~lATGG--RDK~vkiWd~t~~~~~~~~tInTiapv~rVkW 271 (839)
T KOG0269|consen 200 YLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWHP-NREWLATGG--RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW 271 (839)
T ss_pred eEEEeeccCchh-----HHHHhhcccCceEEEeecC-CCceeeecC--CCccEEEEeccCCCccceeEEeecceeeeeee
Confidence 999999998754 3778899999999999999 688899987 99999999998654 6778888999999999
Q ss_pred cCCCCeEEEEec-CCCCcEEEEeCCC-ceeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCccc
Q 012679 368 NKNERELLSSHG-FTQNQLTLWKYPS-MVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFGAPQVI 439 (458)
Q Consensus 368 s~~~~~l~~~~g-~~d~~i~iwd~~~-~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~~~~~~~~ 439 (458)
-|...+.++++. ..|-.|+|||++. .-+..++..|+..++.++|-. |...+.+++.||+|..-.+.+.....
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~pi 346 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTPI 346 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccChh
Confidence 999887765543 3577899999975 567788999999999999965 56788999999999877776655443
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.5e-25 Score=193.65 Aligned_cols=264 Identities=16% Similarity=0.252 Sum_probs=203.9
Q ss_pred ccceeeccC--CCeE-EEEcCCEEEEEECCC-CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679 143 YLNLLDWGS--SNVL-AIALGSTVYLWDASD-GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 143 ~~~~~~~~~--~~~l-a~~~d~~v~iwd~~~-~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~ 218 (458)
.+..++|++ .+++ +++.||+|++|+++. |.... .....|.++|.+++|+.||..+++|+.|+.+++||+.+++ +
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~ 106 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-V 106 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-e
Confidence 467788887 4444 888999999999987 44433 4456789999999999999999999999999999999995 4
Q ss_pred EEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE
Q 012679 219 RTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw 294 (458)
..+.. |..+|.++.|= -..|++|+.|.+|+.||.+.... +.++. -...+.++.. -..+++++..++.|.+|
T Consensus 107 ~~v~~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 107 SQVAA-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-VATLQ-LPERVYAADV--LYPMAVVATAERHIAVY 181 (347)
T ss_pred eeeee-cccceeEEEEecCCCcceeEecccccceeecccCCCCe-eeeee-ccceeeehhc--cCceeEEEecCCcEEEE
Confidence 55555 99999999992 25789999999999999997664 33332 2445655544 34578889999999999
Q ss_pred eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe--eEEEeCC----------CCe
Q 012679 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC--LNSVDTG----------SQV 362 (458)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~~~~----------~~v 362 (458)
+++.+.... ......-.-.++|++..++.... +.|+ .+|.+.+..+..+.. -.++.++ ..|
T Consensus 182 nL~n~~te~----k~~~SpLk~Q~R~va~f~d~~~~-alGs--iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 182 NLENPPTEF----KRIESPLKWQTRCVACFQDKDGF-ALGS--IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred EcCCCcchh----hhhcCcccceeeEEEEEecCCce-Eeee--ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 998765411 01111223467889888876555 5555 899999999887632 2233322 137
Q ss_pred EEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679 363 CALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 363 ~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 422 (458)
++++|+|....|++++ .||++.+||-....++.+.+.|..+|++.+|+.+|.++|-+.
T Consensus 255 Nsi~FhP~hgtlvTaG--sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAG--SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cceEeecccceEEEec--CCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 8899999999999864 799999999999999999999999999999999999987653
No 87
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.1e-26 Score=208.65 Aligned_cols=273 Identities=19% Similarity=0.283 Sum_probs=216.9
Q ss_pred CEEEEEECCCCCeeeEEEecCC-CCCEEEEEEcCCCCEEEEEec-CCeEEEEeCCCceeeEEecCCCcccEEEEEeC--C
Q 012679 161 STVYLWDASDGTTSELVTVDDE-NGPVTSVNWAPDGRHIAIGLN-NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--N 236 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h-~~~V~~v~~s~~g~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~ 236 (458)
.++.+||+.+|.. +.++++. ...-.++..- .+.|++++.. ...|.+|.+........... -+++|.+++-+ |
T Consensus 18 ~~~~~~dl~TGt~--~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v-~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 18 INCIVWDLRTGTS--LLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIV-LPGPVHALASSNLG 93 (476)
T ss_pred cceeEEecCCCce--eEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcc-cccceeeeecCCCc
Confidence 4699999999986 6666543 1111111111 3467766644 44799999877665553333 67789999884 6
Q ss_pred CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC---CCCcceeeeeecc
Q 012679 237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS---SNSVTQWLHRLEE 313 (458)
Q Consensus 237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~ 313 (458)
.+|+.|+..|.|++|.+.++.. +..+.+|-+.|+++.|+-||.+|++||.||.|.+|++...- ......+++.+..
T Consensus 94 ~~l~ag~i~g~lYlWelssG~L-L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGIL-LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred eEEEeecccCcEEEEEeccccH-HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 8888888999999999998874 56778999999999999999999999999999999864321 1113456889999
Q ss_pred cccceeEEEecCCC-CcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679 314 HTSAVKAIAWCPFQ-SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 314 h~~~v~~l~~~p~~-~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
|.-+|+.+...+-+ ...+++.+ .|+++++||+..|..+.++..+..+.+++.+|.+..+++ |..+|.|.+.++..
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yi--Gt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTAS--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYI--GTEEGKIFQNLLFK 248 (476)
T ss_pred CcceeEEEEecCCCccceEEEec--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEe--cCCcceEEeeehhc
Confidence 99999999988742 34566666 999999999999999999999999999999999999999 88999999887643
Q ss_pred ----------------ceeeEEEeCCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 393 ----------------MVKMAELSGHTS--RVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 393 ----------------~~~~~~~~~h~~--~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
+..+..+.||.+ .|+|++++-||..|++|+.||+|+|||+...+.+....
T Consensus 249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 234667789998 89999999999999999999999999998876655443
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.2e-27 Score=213.19 Aligned_cols=254 Identities=23% Similarity=0.343 Sum_probs=214.6
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINN 251 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vw 251 (458)
...+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++.+ ..+.|+++.|+ +..+++++.|+.+++|
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCceEEeecCCCceeee
Confidence 45667889999999999998899999999999999987776 5666665 77889999995 7899999999999999
Q ss_pred EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331 (458)
Q Consensus 252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll 331 (458)
++...+ ...++.+|+..|+++.|......+++|+.|.+|++||+....+ ..++. ....+..|+.. ...+
T Consensus 247 nvd~~r-~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C------~kt~l-~~S~cnDI~~~---~~~~ 315 (459)
T KOG0288|consen 247 NVDSLR-LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC------SKTVL-PGSQCNDIVCS---ISDV 315 (459)
T ss_pred eccchh-hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe------ecccc-ccccccceEec---ceee
Confidence 998665 4788999999999999988777799999999999999988665 22221 23344555544 3566
Q ss_pred EEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC----CcEE
Q 012679 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT----SRVL 407 (458)
Q Consensus 332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~----~~V~ 407 (458)
++|. .|++|++||.++..+...++.++.|+++..++++..++++ ..|.++.++|+++.+....+.+.. ...+
T Consensus 316 ~SgH--~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss--sRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 316 ISGH--FDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS--SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred eecc--cccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee--cCCCceeeeecccccEEEEeeccccccccccc
Confidence 6655 9999999999999999999999999999999999999996 389999999999998888775432 3488
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCC
Q 012679 408 FMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPK 445 (458)
Q Consensus 408 ~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~ 445 (458)
.+.|||++.|+++||.||.|+||++++++..+......
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence 99999999999999999999999999988776655443
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=7.5e-26 Score=227.05 Aligned_cols=248 Identities=23% Similarity=0.423 Sum_probs=208.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--cCCeEEEEeCCC------------ceeeEEecCCCcccEEEEEe--CCCeEEEEeC
Q 012679 181 DENGPVTSVNWAPDGRHIAIGL--NNCQVQLWDSTA------------NRQLRTLRGGHRSRVGSLAW--NNHILTTGGM 244 (458)
Q Consensus 181 ~h~~~V~~v~~s~~g~~la~g~--~dg~v~iwd~~~------------~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~ 244 (458)
.++..|.+|..+|||..+|+|+ .||.+.||+.+. .+.+.++.. |.+.|.|+.| ||.+||+|+.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCCeEeeccC
Confidence 3456799999999999999999 899999997532 234455555 9999999999 6899999999
Q ss_pred CCcEEEEEccC------CC-----------eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee
Q 012679 245 DGLIINNDVRV------RD-----------HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW 307 (458)
Q Consensus 245 dg~i~vwd~~~------~~-----------~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 307 (458)
|+.|.||+... .. ..+..+.+|...|..++|+|++.+|++++.|++|.||+..+...
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~------ 163 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL------ 163 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee------
Confidence 99999999872 00 24667889999999999999999999999999999999998865
Q ss_pred eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-------CCeEEEEEcCCCCeEEEEecC
Q 012679 308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-------SQVCALLWNKNERELLSSHGF 380 (458)
Q Consensus 308 ~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~g~ 380 (458)
+..+.+|.+.|..+.|.|-|. ++|+-+ .|++|++|++.+..+.+.+... .....+.|+|||.+|++.++.
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gk-y~ASqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGK-YFASQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeeeecccccccceEECCccC-eeeeec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 889999999999999999655 555555 8999999998887777777432 347889999999999998765
Q ss_pred CCC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCC------C-----------CEEEEEeCCCcEEEEecCCCCcc
Q 012679 381 TQN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPD------G-----------CTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 381 ~d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd------g-----------~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
..+ .+.|.+-.+.+.-..|-||..++.+++|+|. . ..+|+|+.|++|-||......+.
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 544 6889998888888899999999999999981 1 16889999999999998555443
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=5.8e-27 Score=198.61 Aligned_cols=263 Identities=18% Similarity=0.313 Sum_probs=228.6
Q ss_pred EEecCCCCCEEEEEEcC---CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC--CeEEEEeCCCcEEEE
Q 012679 177 VTVDDENGPVTSVNWAP---DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINN 251 (458)
Q Consensus 177 ~~~~~h~~~V~~v~~s~---~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vw 251 (458)
.+..+|..+|-.++||| +|-+|++++.||.-.+-+-++|.-+.++.+ |.+.|.+...+. ...++++.|-+-++|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-hkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-HKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-cCcceeeeecCchhhhhhhhcccchhhhh
Confidence 45678999999999986 899999999999999999999999999998 999999999864 567788899999999
Q ss_pred EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331 (458)
Q Consensus 252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll 331 (458)
|.-++..+ ..+ .|..-|..++|+.|.++|++|+.+..++|||++....+ ...+.+|.+.|+.+.|+.....+|
T Consensus 87 ~a~tgdel-hsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap-----p~E~~ghtg~Ir~v~wc~eD~~iL 159 (334)
T KOG0278|consen 87 DAVTGDEL-HSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP-----PKEISGHTGGIRTVLWCHEDKCIL 159 (334)
T ss_pred hhhhhhhh-hhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC-----chhhcCCCCcceeEEEeccCceEE
Confidence 99887752 333 57888999999999999999999999999999887653 567889999999999999666666
Q ss_pred EEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ 411 (458)
Q Consensus 332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 411 (458)
.+ . .|++||+||.+++..++++...++|+++..+++|++|.++.| +.|.+||..+...+..++ -...|.+..+
T Consensus 160 SS-a--dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g---ssV~Fwdaksf~~lKs~k-~P~nV~SASL 232 (334)
T KOG0278|consen 160 SS-A--DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG---SSVKFWDAKSFGLLKSYK-MPCNVESASL 232 (334)
T ss_pred ee-c--cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC---ceeEEeccccccceeecc-Cccccccccc
Confidence 55 4 899999999999999999999999999999999999998754 689999999999998876 3456899999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCCcccccCCCCCCCCccccc
Q 012679 412 SPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQL 454 (458)
Q Consensus 412 spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~ 454 (458)
+|+...++.|+.|+.++.||..++.++......++++-.+.+|
T Consensus 233 ~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF 275 (334)
T KOG0278|consen 233 HPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF 275 (334)
T ss_pred cCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE
Confidence 9999999999999999999999999888755555555444444
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.6e-25 Score=195.54 Aligned_cols=243 Identities=16% Similarity=0.259 Sum_probs=200.3
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVE 261 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~ 261 (458)
.+.|++|.|+|.+..|++++.||.+++||+........+. |..++.+++| +...+++|+.||.|+.+|+.++.. .
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~--~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNE--D 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccCCceEEEeccCceEEEEEecCCcc--e
Confidence 5789999999999999999999999999999987777777 9999999999 568999999999999999998874 5
Q ss_pred EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe
Q 012679 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341 (458)
Q Consensus 262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~ 341 (458)
.+..|...|.|+.+++....+++||.|++|++||.+.... ...+. ....|.++.... ..| ++|+ .|..
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~------~~~~d-~~kkVy~~~v~g--~~L-vVg~--~~r~ 156 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV------VGTFD-QGKKVYCMDVSG--NRL-VVGT--SDRK 156 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc------ccccc-cCceEEEEeccC--CEE-EEee--cCce
Confidence 7778999999999999889999999999999999987443 33332 234788887653 344 4443 8999
Q ss_pred EEEEECCCCCeeEEE---eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc----eeeEEEeCCC---------Cc
Q 012679 342 IKFWNTHTGACLNSV---DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM----VKMAELSGHT---------SR 405 (458)
Q Consensus 342 i~lwd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~----~~~~~~~~h~---------~~ 405 (458)
+.+||+++....... ....++.++++.|++.-.++ +.-+|.|.+=.+... .+...|+.|. .+
T Consensus 157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred EEEEEcccccchhhhccccceeEEEEEEEecCCCceEE--EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 999999987755433 33567999999998877777 447999988766654 4555677774 46
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCC
Q 012679 406 VLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA 443 (458)
Q Consensus 406 V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~ 443 (458)
|++|+|+|-..+|+||+.||.|.+||+++.+.+.....
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcchhhhhhccC
Confidence 99999999999999999999999999999887766553
No 92
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=4.3e-24 Score=201.60 Aligned_cols=270 Identities=13% Similarity=0.134 Sum_probs=202.3
Q ss_pred eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeEEecCCCcccEEEE
Q 012679 154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSL 232 (458)
Q Consensus 154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 232 (458)
+++.+.|+.|++||..+++. +..+..+. .+.+++|+|+|+.+ ++++.++.|++||..+++.+..+.. +. .+..+
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~--~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~-~~~~~ 78 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEV--TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-GP-DPELF 78 (300)
T ss_pred EEEecCCCEEEEEECCCCce--EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-CC-CccEE
Confidence 56777899999999998876 44555443 46789999999977 5667889999999999988877764 32 24566
Q ss_pred EeC--CCeEEE-EeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC-cEEEEeCCCCCCCCcceee
Q 012679 233 AWN--NHILTT-GGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN-LLHIWDRSMASSNSVTQWL 308 (458)
Q Consensus 233 ~~~--~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~ 308 (458)
+|+ ++.+++ ++.++.|.+||+++... +..+.. ...+.+++|+|+++++++++.++ .+.+||..+... .
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~------~ 150 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI------V 150 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE------E
Confidence 774 565654 45689999999987553 444432 33468899999999999988775 567789876543 2
Q ss_pred eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--------CCeEEEEEcCCCCeEEEEecC
Q 012679 309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--------SQVCALLWNKNERELLSSHGF 380 (458)
Q Consensus 309 ~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~g~ 380 (458)
.... ....+.+++|+|++..+++++. .++.|++||+.+++.+..+... .....+.|+|+++.++++.+
T Consensus 151 ~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~- 226 (300)
T TIGR03866 151 DNVL-VDQRPRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG- 226 (300)
T ss_pred EEEE-cCCCccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-
Confidence 2221 2234578999999887777654 7899999999999887766422 12457889999999776544
Q ss_pred CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCCccccc
Q 012679 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA-AADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 381 ~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s~Dg~i~iW~~~~~~~~~~~ 441 (458)
.++.+.+||..+++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+.+.+.+.+.
T Consensus 227 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 227 PANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 46789999999888776553 44578999999999999876 46899999999988765544
No 93
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.3e-25 Score=220.63 Aligned_cols=238 Identities=24% Similarity=0.434 Sum_probs=204.3
Q ss_pred cceeecc--CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 144 LNLLDWG--SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 144 ~~~~~~~--~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
+-.+.+. .+.+++++.|.++++||..+|++ ...+.+|.+.|.++... +.++++|+.|.+|++|++.++..+..+
T Consensus 252 V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C--~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~ 327 (537)
T KOG0274|consen 252 VWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC--THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLL 327 (537)
T ss_pred ceeEEEecCCCEEEEEecCCcEEeEecCCCcE--EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEe
Confidence 4445555 56788999999999999999998 77788999999999875 457888999999999999999999999
Q ss_pred cCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC-C
Q 012679 222 RGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA-S 300 (458)
Q Consensus 222 ~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~-~ 300 (458)
.+ |...|.++..++.++++|+.||.|.+||+.+.+ ++..+.+|...|.++.+... ..+++|+.|++|++||+++. +
T Consensus 328 ~~-h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 328 RG-HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred cc-ccccEEEEEecCCEEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence 98 999999999999999999999999999999665 58999999999999988655 89999999999999999998 5
Q ss_pred CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcCCCCeEEEEe
Q 012679 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSH 378 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~ 378 (458)
+ ++.+.+|.+-|..+.+. ..++++++ .|++|++||..+++++..+... ..+..+++. ...+++
T Consensus 405 c------~~tl~~h~~~v~~l~~~---~~~Lvs~~--aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~-- 469 (537)
T KOG0274|consen 405 C------IHTLQGHTSLVSSLLLR---DNFLVSSS--ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILC-- 469 (537)
T ss_pred h------hhhhcCCcccccccccc---cceeEecc--ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEE--
Confidence 5 88999999999777764 35666666 9999999999999999999874 567777766 345555
Q ss_pred cCCCCcEEEEeCCCceeeEEEeCCC
Q 012679 379 GFTQNQLTLWKYPSMVKMAELSGHT 403 (458)
Q Consensus 379 g~~d~~i~iwd~~~~~~~~~~~~h~ 403 (458)
...++.+.+||+++++.+..+-.+.
T Consensus 470 s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 470 SSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred EecCCeeEEEecccCchhhhhhhcc
Confidence 3489999999999999888774444
No 94
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=2.4e-25 Score=213.05 Aligned_cols=261 Identities=19% Similarity=0.321 Sum_probs=217.8
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEE-EEEcC-CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTS-VNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRV 229 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~-v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v 229 (458)
.-+++++.||++++|+-..++......+.+|.+-|.+ +++-+ ++-.|++|+.|+.|.+|...+...+..+.+ |...|
T Consensus 26 ~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-H~snV 104 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKG-HKSNV 104 (745)
T ss_pred eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhc-cccce
Confidence 3478888899999999888777666778888888877 88876 555799999999999999999999999998 99999
Q ss_pred EEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679 230 GSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL 308 (458)
Q Consensus 230 ~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 308 (458)
.|++-. ...+++|+.|.++++|-... +...+.+|+..|.+++.-|++ .+++|+.|.+|++|.- +.. +
T Consensus 105 C~ls~~~~~~~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~------l 172 (745)
T KOG0301|consen 105 CSLSIGEDGTLISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTL------L 172 (745)
T ss_pred eeeecCCcCceEecccccceEEecchh---hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cch------h
Confidence 999973 45589999999999998743 355689999999999999988 8999999999999985 333 7
Q ss_pred eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEE
Q 012679 309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTL 387 (458)
Q Consensus 309 ~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~i 387 (458)
.++.+|...|+.+++-++ .. +++++ .||.|++|++ +|+++..+ .+.+-+.++....++..++++ | +|++++|
T Consensus 173 ~tf~gHtD~VRgL~vl~~-~~-flScs--NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~-g-EDrtlri 245 (745)
T KOG0301|consen 173 KTFSGHTDCVRGLAVLDD-SH-FLSCS--NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST-G-EDRTLRI 245 (745)
T ss_pred hhhccchhheeeeEEecC-CC-eEeec--CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe-c-CCceEEE
Confidence 889999999999999984 33 44455 8999999999 66666655 455679999988888888775 3 8999999
Q ss_pred EeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 388 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
|+.. ++.+.+.-.+..|+++.+-++|. |++|+.||.||||.....
T Consensus 246 W~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 246 WKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred eecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 9987 66666664556899999998887 667999999999998743
No 95
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=205.98 Aligned_cols=272 Identities=19% Similarity=0.236 Sum_probs=213.1
Q ss_pred cceeeccC---CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 144 LNLLDWGS---SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 144 ~~~~~~~~---~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
+.+++-++ ..+++|+.||.|+|||+....+ +.++..|.+.|..|++.. ..+++++.|.+|+.|.+.. ..+++
T Consensus 69 V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~t 143 (433)
T KOG0268|consen 69 VSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHT 143 (433)
T ss_pred cchhhcCcchhhhhhccccCceEEEEehhhhhh--hheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Cccee
Confidence 44455555 4588999999999999998776 788899999999999987 5688888999999999776 36666
Q ss_pred ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCC
Q 012679 221 LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~ 297 (458)
+. ....+..+.- .+..+++++. .|.|||.+... ++..+.-....|.++.|+|-. ..|++|+.|+.|.+||++
T Consensus 144 il--g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R 218 (433)
T KOG0268|consen 144 IL--GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR 218 (433)
T ss_pred ee--ccccccccccccccccccccCc--eeeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc
Confidence 65 3444555554 3577888775 58999997554 467777677889999999954 567788899999999999
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEE-eCCCCeEEEEEcCCCCeEE
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSV-DTGSQVCALLWNKNERELL 375 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~ 375 (458)
.... ++++. ..-.-..|+|+| ....++++. .|..++.+|++... ++... ++.+.|..+.|+|.|++++
T Consensus 219 ~~~P------l~KVi-~~mRTN~IswnP-eafnF~~a~--ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 219 QASP------LKKVI-LTMRTNTICWNP-EAFNFVAAN--EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred cCCc------cceee-eeccccceecCc-cccceeecc--ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 8876 33332 233456899999 677777766 99999999998754 44443 4567899999999999999
Q ss_pred EEecCCCCcEEEEeCCCceeeEEEeCCC---CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 012679 376 SSHGFTQNQLTLWKYPSMVKMAELSGHT---SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVI 439 (458)
Q Consensus 376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~---~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~ 439 (458)
+ |+-|.+|+||.+..+..-..+ |+ ..|.|+.||-|.+++++||.|+.|++|.-...++..
T Consensus 289 s--gsyDksIRIf~~~~~~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 289 S--GSYDKSIRIFPVNHGHSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred c--ccccceEEEeecCCCcchhhh--hHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 9 668999999999876543332 33 569999999999999999999999999987655543
No 96
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.1e-25 Score=194.16 Aligned_cols=243 Identities=16% Similarity=0.255 Sum_probs=193.2
Q ss_pred CCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCC-ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC
Q 012679 182 ENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTA-NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD 257 (458)
Q Consensus 182 h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 257 (458)
..+.|.+++||| ...+++.|+.||+|++|+++. +..+.+-...|.++|.+++| +|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 467899999999 566777999999999999987 45444444449999999999 58999999999999999999886
Q ss_pred eeEEEEcccccceEeEEEcCCCC--EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679 258 HIVETYRGHNQEVCGLKWSASGQ--QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~spd~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
+..+..|..+|..+.|-+... .|++|+.|.+|+.||.+.... +.++. -...+.++..- ..+++++.
T Consensus 106 --~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p------v~t~~-LPeRvYa~Dv~---~pm~vVat 173 (347)
T KOG0647|consen 106 --VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP------VATLQ-LPERVYAADVL---YPMAVVAT 173 (347)
T ss_pred --eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe------eeeee-ccceeeehhcc---CceeEEEe
Confidence 567888999999999988665 899999999999999997765 55543 34566666543 23555544
Q ss_pred CCCCCeEEEEECCCCCeeEE-E--eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc--eeeEEEeCCC-------
Q 012679 336 GGGDRCIKFWNTHTGACLNS-V--DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM--VKMAELSGHT------- 403 (458)
Q Consensus 336 g~~d~~i~lwd~~~~~~~~~-~--~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~--~~~~~~~~h~------- 403 (458)
.++.|.+|+++++..... + ...-++.+++..++....+. |.-+|.+.|..+..+ +.-.+++.|.
T Consensus 174 --a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al--GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 174 --AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL--GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred --cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe--eeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 799999999987653322 2 23567899998888877776 668999999988776 4455667775
Q ss_pred --CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 404 --SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 404 --~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
..|++|+|+|.-..|+|+|.||++.+||-....+++.
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 2488899999999999999999999999876666554
No 97
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.3e-24 Score=177.31 Aligned_cols=280 Identities=20% Similarity=0.336 Sum_probs=217.3
Q ss_pred CccccceeeccC-CCeEEEEcC-CEEEEEECC------CC----C---eeeEEEecCCCCCEEEEEEcCCCCEEEEEecC
Q 012679 140 DDYYLNLLDWGS-SNVLAIALG-STVYLWDAS------DG----T---TSELVTVDDENGPVTSVNWAPDGRHIAIGLNN 204 (458)
Q Consensus 140 ~d~~~~~~~~~~-~~~la~~~d-~~v~iwd~~------~~----~---~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d 204 (458)
+...+..++|++ +.+.+++.+ .+++|.-.. .+ + ......-+.|.+.|+|.+|+|+|++||+|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 334678899998 567777665 456655322 11 1 11123345789999999999999999999999
Q ss_pred CeEEEEeCCCcee-----eEEecCCCcccEEEEEe-C-----CCeEEEEe-CCCcEEEEEccCCCeeEEEEcccccceEe
Q 012679 205 CQVQLWDSTANRQ-----LRTLRGGHRSRVGSLAW-N-----NHILTTGG-MDGLIINNDVRVRDHIVETYRGHNQEVCG 272 (458)
Q Consensus 205 g~v~iwd~~~~~~-----~~~~~~~~~~~v~~l~~-~-----~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~~ 272 (458)
.+|++.-++...+ -..+.. |.+.|..++| + +.+|++++ .|..|++-|...++. ...+.+|++.|.+
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtghila 188 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGHILA 188 (350)
T ss_pred ceEEEEecccccccccCcceeeee-cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCcccEEE
Confidence 9999976543322 224555 9999999999 1 35677665 477888888877764 6788999999987
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec----c---cccceeEEEecCCCCcEEEEeCCCCCCeEEEE
Q 012679 273 LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE----E---HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFW 345 (458)
Q Consensus 273 l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~----~---h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lw 345 (458)
+ ++-++-.+++|+.|.+|++||++.... +..+. + ...+|.+++..|. ..++++|. .|....+|
T Consensus 189 l-yswn~~m~~sgsqdktirfwdlrv~~~------v~~l~~~~~~~glessavaav~vdps-grll~sg~--~dssc~ly 258 (350)
T KOG0641|consen 189 L-YSWNGAMFASGSQDKTIRFWDLRVNSC------VNTLDNDFHDGGLESSAVAAVAVDPS-GRLLASGH--ADSSCMLY 258 (350)
T ss_pred E-EEecCcEEEccCCCceEEEEeeeccce------eeeccCcccCCCcccceeEEEEECCC-cceeeecc--CCCceEEE
Confidence 6 456799999999999999999998766 33332 1 2367999999994 67888876 99999999
Q ss_pred ECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc----eeeEEEeCCCCcEEEEEEcCCCCEEEE
Q 012679 346 NTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM----VKMAELSGHTSRVLFMAQSPDGCTVAS 420 (458)
Q Consensus 346 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~----~~~~~~~~h~~~V~~l~~spdg~~l~s 420 (458)
|++.+.+++.+. +...|.++.|+|...++++ +.-|..|++-|+... -.+.....|...+..+.|+|..-.+++
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt--~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLT--CSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEE--ecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 999999999885 4578999999999999999 558999999998632 234455679999999999999988999
Q ss_pred EeCCCcEEEEecC
Q 012679 421 AAADETLRFWNVF 433 (458)
Q Consensus 421 ~s~Dg~i~iW~~~ 433 (458)
.+.|.++.+|-+.
T Consensus 337 ssadkt~tlwa~~ 349 (350)
T KOG0641|consen 337 SSADKTATLWALN 349 (350)
T ss_pred ccCcceEEEeccC
Confidence 9999999999764
No 98
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=9.7e-26 Score=206.41 Aligned_cols=242 Identities=22% Similarity=0.394 Sum_probs=192.4
Q ss_pred ccccceeeccC---CCeEEEEcCCEEEEEECCCC--------CeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEE
Q 012679 141 DYYLNLLDWGS---SNVLAIALGSTVYLWDASDG--------TTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQ 208 (458)
Q Consensus 141 d~~~~~~~~~~---~~~la~~~d~~v~iwd~~~~--------~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~ 208 (458)
+..+|....-| .-+++.+.++.|+|||..+. +..+-..+.+|...=++++|++. .-+|++|+.|+.|.
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~ 203 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC 203 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence 33444444433 23444566789999997642 33334578899887889999984 44789999999999
Q ss_pred EEeCCCcee-------eEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccC-CCeeEEEEcccccceEeEEEcC
Q 012679 209 LWDSTANRQ-------LRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRV-RDHIVETYRGHNQEVCGLKWSA 277 (458)
Q Consensus 209 iwd~~~~~~-------~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~l~~sp 277 (458)
+||+..... ...+. +|...|..++|+ ..++++++.|+.+.|||+|+ .........+|.++|.|++|+|
T Consensus 204 lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp 282 (422)
T KOG0264|consen 204 LWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNP 282 (422)
T ss_pred EEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCC
Confidence 999975433 23344 499999999994 68999999999999999996 3344567789999999999999
Q ss_pred -CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE--
Q 012679 278 -SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN-- 354 (458)
Q Consensus 278 -d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~-- 354 (458)
++..||+|+.|++|.+||+++... +++.+.+|...|.++.|+|....+||+++ .|+.+.+||+..-...+
T Consensus 283 ~~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 283 FNEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSG--TDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred CCCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEEEeCCCCCceeEecc--cCCcEEEEeccccccccCh
Confidence 677889999999999999998765 38999999999999999999999999987 99999999987532211
Q ss_pred ----------EEe---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679 355 ----------SVD---TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 355 ----------~~~---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
.+. +...|+.+.|+|+...++++. .+|+.+.||+..
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv-aeDN~LqIW~~s 404 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV-AEDNILQIWQMA 404 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEe-cCCceEEEeecc
Confidence 122 235699999999999988875 489999999975
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.5e-25 Score=189.59 Aligned_cols=236 Identities=24% Similarity=0.410 Sum_probs=191.6
Q ss_pred eeccCCCeEEEEcCCEEEEEECCCCCe-eeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCceee--EEe
Q 012679 147 LDWGSSNVLAIALGSTVYLWDASDGTT-SELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANRQL--RTL 221 (458)
Q Consensus 147 ~~~~~~~~la~~~d~~v~iwd~~~~~~-~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~~~--~~~ 221 (458)
+++.+.++++++.|++|+|+.+..+.. ..+.++.+|.++|..++|.. .|.+||+++.||.|.||.-++++-. ...
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh
Confidence 456678999999999999999886554 67889999999999999976 8999999999999999998877532 233
Q ss_pred cCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCC---C-----------CE
Q 012679 222 RGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSAS---G-----------QQ 281 (458)
Q Consensus 222 ~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd---~-----------~~ 281 (458)
.. |...|++++|- |-.|++++.||.|.|.+.+... ...+....|.-.|++++|.|. | +.
T Consensus 99 ~~-h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 99 AA-HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hh-hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 34 99999999993 5789999999999999988762 223455689999999999995 4 56
Q ss_pred EEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC---CcEEEEeCCCCCCeEEEEECCCCC--eeEEE
Q 012679 282 LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ---SNLLATGGGGGDRCIKFWNTHTGA--CLNSV 356 (458)
Q Consensus 282 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~ll~s~~g~~d~~i~lwd~~~~~--~~~~~ 356 (458)
|++|+.|+.|+||+.....- ....++.+|...|+.++|+|.- ...+|+++ .||++.||-..... -..++
T Consensus 178 lvSgGcDn~VkiW~~~~~~w----~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tl 251 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSW----KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTL 251 (299)
T ss_pred eeccCCccceeeeecCCcch----hhhhhhhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCcccccc
Confidence 99999999999999988633 1235588999999999999964 35678877 99999999876321 11122
Q ss_pred --eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679 357 --DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 357 --~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
+....+..+.|+..|+.|+++. .|+.+.+|.-.
T Consensus 252 l~~f~~~~w~vSWS~sGn~LaVs~--GdNkvtlwke~ 286 (299)
T KOG1332|consen 252 LEEFPDVVWRVSWSLSGNILAVSG--GDNKVTLWKEN 286 (299)
T ss_pred cccCCcceEEEEEeccccEEEEec--CCcEEEEEEeC
Confidence 2355699999999999999954 68999999854
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=2.8e-25 Score=205.06 Aligned_cols=275 Identities=20% Similarity=0.313 Sum_probs=219.5
Q ss_pred ccceeeccC-CCeEEEEcCCEEEEEECCCC-CeeeEEEec--CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679 143 YLNLLDWGS-SNVLAIALGSTVYLWDASDG-TTSELVTVD--DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~-~~~~~~~~~--~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~ 218 (458)
.+..+..+. .+-+..+..|.|+|||+... ...++..+. .....|.++...|||+.|++|+.-.+|.|||+......
T Consensus 421 vVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr 500 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR 500 (705)
T ss_pred EEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc
Confidence 344445544 66777777899999998743 222222222 34678999999999999999999999999999876543
Q ss_pred E--EecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE
Q 012679 219 R--TLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294 (458)
Q Consensus 219 ~--~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw 294 (458)
. .+.. ....+.+|+. +.++.++++.||.|.|||+... .+++.+++|...+.||.+++||..|.+|+-|++|+.|
T Consensus 501 ikaelts-sapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcW 578 (705)
T KOG0639|consen 501 IKAELTS-SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCW 578 (705)
T ss_pred hhhhcCC-cchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceeecCCCccceeeh
Confidence 2 2322 2233444444 5689999999999999999854 4689999999999999999999999999999999999
Q ss_pred eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeE
Q 012679 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL 374 (458)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 374 (458)
|++.+.. ++. ......|.++..||.+.++++ |- .++.+.+......+..+...+.+-|.++.|.+.|+.+
T Consensus 579 Dlregrq------lqq-hdF~SQIfSLg~cP~~dWlav-GM--ens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 579 DLREGRQ------LQQ-HDFSSQIFSLGYCPTGDWLAV-GM--ENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred hhhhhhh------hhh-hhhhhhheecccCCCccceee-ec--ccCcEEEEecCCccceeecccccEEEEEEecccCcee
Confidence 9998765 222 134678999999997666655 43 8888988888777766666778889999999999999
Q ss_pred EEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
+++. .|+.+..|..+-+..+...+ ..+.|+++.+|.|.++||||+.|....||.+
T Consensus 649 vStG--kDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTG--KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecC--chhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9963 89999999999999988776 4678999999999999999999999999876
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.3e-25 Score=201.09 Aligned_cols=274 Identities=20% Similarity=0.307 Sum_probs=223.2
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeee-EE--------------Ee-cCCCCCEEEEEEcCCCCEEEEEecC
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSE-LV--------------TV-DDENGPVTSVNWAPDGRHIAIGLNN 204 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~-~~--------------~~-~~h~~~V~~v~~s~~g~~la~g~~d 204 (458)
.+.++..++ ...+.++.+++|.=|++.+|+... +. .- ..|...+.+++.++||+|||+|+.|
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d 223 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRD 223 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCC
Confidence 455666666 589999999999999998876320 00 01 2788899999999999999999999
Q ss_pred CeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE
Q 012679 205 CQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL 282 (458)
Q Consensus 205 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l 282 (458)
..|.||+..+.+.++.+.+ |.+.|.+++| ..+.|++++.|+.|++|++..... +.++.+|...|.+|....-++.+
T Consensus 224 ~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~reR~v 301 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALSRERCV 301 (479)
T ss_pred ceEEEecCcccchhhcccc-cccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhcccceE
Confidence 9999999999999999987 9999999999 468999999999999999986553 78888999999999998888888
Q ss_pred EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---
Q 012679 283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--- 359 (458)
Q Consensus 283 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--- 359 (458)
-+|+.|+++++|++.... ...+.+|.+.+-|++|-.+ .-+++|+ .+|.|.+|++.+.+++.+....
T Consensus 302 tVGgrDrT~rlwKi~ees-------qlifrg~~~sidcv~~In~--~HfvsGS--dnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 302 TVGGRDRTVRLWKIPEES-------QLIFRGGEGSIDCVAFIND--EHFVSGS--DNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred EeccccceeEEEeccccc-------eeeeeCCCCCeeeEEEecc--cceeecc--CCceEEEeeecccCceeEeeccccc
Confidence 888899999999994433 3556788899999999873 5566765 9999999999999988776421
Q ss_pred ----------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc----eeeEEEeCCCCcEEEEEEcCCCCEEEEEeC-C
Q 012679 360 ----------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM----VKMAELSGHTSRVLFMAQSPDGCTVASAAA-D 424 (458)
Q Consensus 360 ----------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~----~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-D 424 (458)
.-|++++..|....+++ |..+|.|++|.+..+ .++..+. -.+-|++++|+++|..|++|.. .
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~as--GS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLAS--GSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred cCCccccccccceeeeEecccCceEEe--cCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccc
Confidence 14788999999998888 778999999998776 4455554 5678999999999997766643 3
Q ss_pred CcEEEEec
Q 012679 425 ETLRFWNV 432 (458)
Q Consensus 425 g~i~iW~~ 432 (458)
-.+-=|-+
T Consensus 448 hRlGRW~~ 455 (479)
T KOG0299|consen 448 HRLGRWWC 455 (479)
T ss_pred cccceeeE
Confidence 34444544
No 102
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=8.4e-24 Score=184.87 Aligned_cols=262 Identities=15% Similarity=0.210 Sum_probs=205.8
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
++..+.+++ +.+++.+.||++++|++..... ...+ .|..++.+++|.++ ..+++|+.||.|+.+|+.++.....
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l--~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL--KLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhh--hhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceee
Confidence 455666664 7799999999999999988754 2333 47889999999974 5689999999999999999886554
Q ss_pred ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
-. |...|.|+... ...+++|+.|++|++||.+.... ...+. ....|.++.. .|+.|++|+.|..|.+||+++
T Consensus 91 gt--h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~-~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 91 GT--HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV-VGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred cc--CCCceEEEEeeccCCeEEEcccCccEEEEecccccc-ccccc-cCceEEEEec--cCCEEEEeecCceEEEEEccc
Confidence 44 99999999996 68999999999999999986332 33332 2347877765 578899999999999999998
Q ss_pred CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC----CeeEEEeC----------CCCeEE
Q 012679 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG----ACLNSVDT----------GSQVCA 364 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~----~~~~~~~~----------~~~v~~ 364 (458)
..... ...-..-...++++++-|.+...+++ + .||.|.+=.+... +....+++ ..+|++
T Consensus 165 ~~~~~----q~reS~lkyqtR~v~~~pn~eGy~~s-S--ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 165 LDEPF----QRRESSLKYQTRCVALVPNGEGYVVS-S--IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred ccchh----hhccccceeEEEEEEEecCCCceEEE-e--ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 76532 11122345678999999966655554 3 8999888766655 22222322 236899
Q ss_pred EEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC
Q 012679 365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA 423 (458)
Q Consensus 365 ~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 423 (458)
++|+|-...+++ |+.||.|.+||..+.+.+.++......|..++|+.||..||+++.
T Consensus 238 i~Fhp~~~tfaT--gGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 238 IAFHPIHGTFAT--GGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEeccccceEEe--cCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999988 779999999999999999999888888999999999999999874
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-25 Score=213.96 Aligned_cols=271 Identities=19% Similarity=0.351 Sum_probs=227.9
Q ss_pred CeEEEEcCCEEEEEECCCCCe----eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc--eeeEEecCCCc
Q 012679 153 NVLAIALGSTVYLWDASDGTT----SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN--RQLRTLRGGHR 226 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~----~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~--~~~~~~~~~~~ 226 (458)
.++++|.||.|++|+...... ..+..++.|.+.|..+....+|+.|++++.|-+|++|+...+ -+..++.. |.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~-H~ 117 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT-HK 117 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc-cc
Confidence 499999999999999865332 135678899999999999999999999999999999999877 56677776 99
Q ss_pred ccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCe---------eEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 227 SRVGSLAW---NNHILTTGGMDGLIINNDVRVRDH---------IVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 227 ~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~---------~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
..|.|++. +..++++|+-|+.|.+||+.++.. ....+. ++...|.+++.++.|..|++|+..+.+++
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence 99999999 678999999999999999997632 122333 78899999999999999999999999999
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCC
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNER 372 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~ 372 (458)
||.++... +..+.+|...|+++..+++|..++.++ .||+|++||+...+|+.++.. ...|.++..+|+-.
T Consensus 198 wDprt~~k------imkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~ 268 (735)
T KOG0308|consen 198 WDPRTCKK------IMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT 268 (735)
T ss_pred eccccccc------eeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcc
Confidence 99999887 888999999999999999887777643 799999999999999998864 45599999999999
Q ss_pred eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
.+++ |+.|+.|..=|+.+......+-....+|..+..+...+-+-+++.|+.|+-|.....
T Consensus 269 ~vYs--G~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 269 HVYS--GGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred eEEe--cCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 9998 889999999999885444444445667888888765555567888999999987543
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.2e-23 Score=174.43 Aligned_cols=247 Identities=21% Similarity=0.358 Sum_probs=201.5
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC------CCce--------eeEEecCCCcccEEEEEeC--CCeE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS------TANR--------QLRTLRGGHRSRVGSLAWN--NHIL 239 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~------~~~~--------~~~~~~~~~~~~v~~l~~~--~~~l 239 (458)
+..++ ....|.+++|+|.|.+.|+|+...+++|-.. ..+. .+..-...|.+.|.|.+|+ |.+|
T Consensus 26 i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geli 104 (350)
T KOG0641|consen 26 INILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELI 104 (350)
T ss_pred EEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeE
Confidence 33443 4678999999999999999999999888632 2211 1122223488999999995 7999
Q ss_pred EEEeCCCcEEEEEccCCCe----eEEEEcccccceEeEEEcC----CCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeee
Q 012679 240 TTGGMDGLIINNDVRVRDH----IVETYRGHNQEVCGLKWSA----SGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHR 310 (458)
Q Consensus 240 ~sg~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~l~~sp----d~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~ 310 (458)
++|+.|.+|++.-+..... .-..+.-|.+.|..++|-. .+.+|++++. |..|++-|...++. .+.
T Consensus 105 atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~------~~a 178 (350)
T KOG0641|consen 105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG------FHA 178 (350)
T ss_pred EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc------cee
Confidence 9999999999987654432 1234667899999999965 3567777764 67788888877776 888
Q ss_pred ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--------CCCeEEEEEcCCCCeEEEEecCCC
Q 012679 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--------GSQVCALLWNKNERELLSSHGFTQ 382 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~g~~d 382 (458)
+.+|.+-|.++- .+...++++|+ .|.+|++||++-..++.++.. .+.|.+++..|.|+.|++ |..|
T Consensus 179 ~sghtghilaly--swn~~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s--g~~d 252 (350)
T KOG0641|consen 179 LSGHTGHILALY--SWNGAMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS--GHAD 252 (350)
T ss_pred ecCCcccEEEEE--EecCcEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee--ccCC
Confidence 999999987663 34568898876 999999999999999998853 146999999999999998 7789
Q ss_pred CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 383 NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 383 ~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
....+||++.++.++.+..|+..|.++.|||...++++++.|..|++=|+.+.
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999754
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.7e-24 Score=198.32 Aligned_cols=250 Identities=21% Similarity=0.350 Sum_probs=209.4
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe----------------c-CCCcccEEEEEe--CC
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL----------------R-GGHRSRVGSLAW--NN 236 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~----------------~-~~~~~~v~~l~~--~~ 236 (458)
...+..|.-+|++|+++|++++.++++.+|+|.=|++.+++..+.+ . ..|...+.+++. ++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3455678889999999999999999999999999999888743110 1 147788888888 68
Q ss_pred CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc
Q 012679 237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS 316 (458)
Q Consensus 237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 316 (458)
.+|++|+.|..|.||+.++.++ +..+.+|.+.|.+++|-.....|++++.|+.|++|++..... +.++.+|+.
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~------vetlyGHqd 287 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY------VETLYGHQD 287 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH------HHHHhCCcc
Confidence 9999999999999999999887 677999999999999999889999999999999999988766 778889999
Q ss_pred ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee
Q 012679 317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM 396 (458)
Q Consensus 317 ~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~ 396 (458)
.|.+|.... -..++.+|+ .|+++++|++.....+....+.+.+-+++|-.+..+ ++ |.++|.|.+|++...+++
T Consensus 288 ~v~~IdaL~-reR~vtVGg--rDrT~rlwKi~eesqlifrg~~~sidcv~~In~~Hf-vs--GSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 288 GVLGIDALS-RERCVTVGG--RDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHF-VS--GSDNGSIALWSLLKKKPL 361 (479)
T ss_pred ceeeechhc-ccceEEecc--ccceeEEEeccccceeeeeCCCCCeeeEEEecccce-ee--ccCCceEEEeeecccCce
Confidence 999998776 356666666 999999999966555555556668888888766554 44 779999999999998888
Q ss_pred EEEe-CC-----------CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 397 AELS-GH-----------TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 397 ~~~~-~h-----------~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
.+.. +| ...|++++..|...++++|+.+|.|++|.+..+-..
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 7653 23 127999999999999999999999999999887443
No 106
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-24 Score=207.89 Aligned_cols=237 Identities=21% Similarity=0.415 Sum_probs=200.3
Q ss_pred ccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee
Q 012679 141 DYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDD-ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ 217 (458)
Q Consensus 141 d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~-h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~ 217 (458)
..++.++.|++ ..|+++..+|.|.|||..+.+. +..+.+ |...|-+++|. +..+.+|+.+|.|..+|+...+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~--~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK--TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc--cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 56788888875 5677777899999999987765 666677 99999999998 67899999999999999998876
Q ss_pred eEE-ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEE--CCCcE
Q 012679 218 LRT-LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGG--NDNLL 291 (458)
Q Consensus 218 ~~~-~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~--~dg~i 291 (458)
... +.+ |...|..+.| ++.++++|+.|+.+.|||..... +...+..|...|..++|+| ...+||+|+ .|+.|
T Consensus 293 ~~~~~~~-H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 293 VVSTLQG-HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred hhhhhhc-ccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 665 554 9999999999 58999999999999999996544 4678889999999999999 677889876 59999
Q ss_pred EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCC
Q 012679 292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKN 370 (458)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~ 370 (458)
++||..++.. +..+ .-...|..|.|++..+.++++. |..++.|.||+..+.+.+..+.. ...|..++++|+
T Consensus 371 ~fwn~~~g~~------i~~v-dtgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 371 KFWNTNTGAR------IDSV-DTGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred EEEEcCCCcE------eccc-ccCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence 9999998765 4444 3468899999999766666655 67888999999999888877754 567999999999
Q ss_pred CCeEEEEecCCCCcEEEEeCCCc
Q 012679 371 ERELLSSHGFTQNQLTLWKYPSM 393 (458)
Q Consensus 371 ~~~l~~~~g~~d~~i~iwd~~~~ 393 (458)
|..+++ |..|.++++|++-..
T Consensus 443 g~~i~t--~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 443 GETIVT--GAADETLRFWNLFDE 463 (484)
T ss_pred CCEEEE--ecccCcEEeccccCC
Confidence 999999 457999999998654
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.7e-25 Score=210.26 Aligned_cols=242 Identities=19% Similarity=0.323 Sum_probs=204.3
Q ss_pred EEEEc-CCCCEEEEEecCCeEEEEeCCCce------eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC-
Q 012679 188 SVNWA-PDGRHIAIGLNNCQVQLWDSTANR------QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD- 257 (458)
Q Consensus 188 ~v~~s-~~g~~la~g~~dg~v~iwd~~~~~------~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~- 257 (458)
.+..+ |.++||.+|+.||.|++|++.... .+..+.. |...|..+.. +++.|++++.|.+|++|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~ 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc
Confidence 34444 467889999999999999986433 3566666 9999998877 57899999999999999998775
Q ss_pred eeEEEEcccccceEeEEE-cCCCCEEEEEECCCcEEEEeCCCCCCC----Ccceeeeeec-ccccceeEEEecCCCCcEE
Q 012679 258 HIVETYRGHNQEVCGLKW-SASGQQLASGGNDNLLHIWDRSMASSN----SVTQWLHRLE-EHTSAVKAIAWCPFQSNLL 331 (458)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~-spd~~~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll 331 (458)
.+..++..|...|.|+++ -++..++|+||-|+.|.+||++.+... ........+. ++...|.+++..+.+ .++
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~i 186 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TII 186 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEE
Confidence 456788899999999999 788899999999999999999977330 0011122333 788899999999854 777
Q ss_pred EEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEE
Q 012679 332 ATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMA 410 (458)
Q Consensus 332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~ 410 (458)
++|+ ..+.|++||.++++.+..+.. ...|..+..+++|..+++ +.+||+|++||+...+++.++..|...|+++.
T Consensus 187 vsGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls--~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~ 262 (735)
T KOG0308|consen 187 VSGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS--ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ 262 (735)
T ss_pred EecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEee--cCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence 7766 899999999999988877764 467999999999999999 55999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 411 QSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 411 ~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
.+|+-..+.+|+.||.|..=|+.+.
T Consensus 263 ~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 263 SSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eCCCcceEEecCCCCcEEecccCCc
Confidence 9999999999999999999999875
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5e-24 Score=210.05 Aligned_cols=241 Identities=19% Similarity=0.314 Sum_probs=206.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc-eeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCee
Q 012679 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN-RQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHI 259 (458)
Q Consensus 181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~ 259 (458)
.|....+.|+|.|+|++|++++.||.|++|+.... +.-..+.. +...|.+++...+.|++|+.+++|.+|.+..+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~- 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE- 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCc-
Confidence 57888999999999999999999999999997766 44445554 7889999999999999999999999999987653
Q ss_pred EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679 260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339 (458)
Q Consensus 260 ~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d 339 (458)
-..+...+-++.+++++-+|+++|.||.|-.|++-+...... ...+.+|.++|.++.|+|. ..+||+.+ -|
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~------~~~lrgh~apVl~l~~~p~-~~fLAvss--~d 159 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ------EKVLRGHDAPVLQLSYDPK-GNFLAVSS--CD 159 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch------heeecccCCceeeeeEcCC-CCEEEEEe--cC
Confidence 234444577899999999999999999999999999988877 7889999999999999996 45555555 79
Q ss_pred CeEEEEECCCCCeeEEEeC---------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--CCCcEEE
Q 012679 340 RCIKFWNTHTGACLNSVDT---------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--HTSRVLF 408 (458)
Q Consensus 340 ~~i~lwd~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--h~~~V~~ 408 (458)
|.|++||+.++.+..++.. ...++.++|+|++..+++.. .++.|.+|+..+++....+.. +...+.+
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~--~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP--VDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec--cCCeEEEEccCCceeheeecccccccceEE
Confidence 9999999999988776642 23467899999988887754 799999999999998888754 3455999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 409 MAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 409 l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
++|+|+|+|||+++.||.|.|||+.+
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999999999999999985
No 109
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=2.1e-24 Score=204.80 Aligned_cols=283 Identities=21% Similarity=0.302 Sum_probs=213.6
Q ss_pred CCeEEEE-cCCEEEEEECCCCCee----eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE--ecCC
Q 012679 152 SNVLAIA-LGSTVYLWDASDGTTS----ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT--LRGG 224 (458)
Q Consensus 152 ~~~la~~-~d~~v~iwd~~~~~~~----~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~--~~~~ 224 (458)
..+++++ .+|.|.++|....... ++.....|...|..++|.|....|++++.|.++++||+++.+++.. +.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G- 142 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG- 142 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc-
Confidence 4566655 5799999998754432 2455668999999999999777889999999999999999988776 555
Q ss_pred CcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCe-------------------e-------EEEEcccccceEe---
Q 012679 225 HRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDH-------------------I-------VETYRGHNQEVCG--- 272 (458)
Q Consensus 225 ~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~-------------------~-------~~~~~~h~~~v~~--- 272 (458)
|...|.+++| +...|++|++||.|.|||++.... . +.....+...|.+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 9999999999 578999999999999999985430 0 1111234444444
Q ss_pred EEEcCCCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeee--eccc---ccceeEEEecCCCCcEEEEeCCCCCCeEEEEE
Q 012679 273 LKWSASGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHR--LEEH---TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN 346 (458)
Q Consensus 273 l~~spd~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~--~~~h---~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd 346 (458)
+.+..|...||++|. |+.|+|||++........++... +..| ...+.++.....|.+++|+| .|+.|++||
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~yn 299 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYN 299 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEe
Confidence 555678999999988 99999999998766443333222 2233 34577888888889999998 699999999
Q ss_pred CCCCC--eeEEEeC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-eeEEEeCCCCcEEEEEEcCC-CCEEE
Q 012679 347 THTGA--CLNSVDT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KMAELSGHTSRVLFMAQSPD-GCTVA 419 (458)
Q Consensus 347 ~~~~~--~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~~~~~~h~~~V~~l~~spd-g~~l~ 419 (458)
+.+.. ++..+.+ ...-..-..+|++.++++ |..|...++|.+.+.+ ....+.||+-.|++++|.|. -.-++
T Consensus 300 m~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S--gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~ 377 (720)
T KOG0321|consen 300 MRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS--GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVA 377 (720)
T ss_pred ccccCcCchhhccCcccceeeeeeecCCCCceEec--cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCce
Confidence 98754 2333322 122334467899999999 7799999999998865 45667899999999999883 33577
Q ss_pred EEeCCCcEEEEecCCCCcccc
Q 012679 420 SAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 420 s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
|++.|..+++|++.++-+...
T Consensus 378 TcSdD~~~kiW~l~~~l~e~~ 398 (720)
T KOG0321|consen 378 TCSDDFRVKIWRLSNGLEEIY 398 (720)
T ss_pred eeccCcceEEEeccCchhhcc
Confidence 889999999999977655443
No 110
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.4e-22 Score=187.63 Aligned_cols=273 Identities=20% Similarity=0.318 Sum_probs=215.0
Q ss_pred cceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEE-ecC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 144 LNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVT-VDD-ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 144 ~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~-~~~-h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
+....|+| .+++.....+.++.|+.+.+.+.+... ++. ....|.|++|.++|. +++|.++|.|.||+..+.+..+
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k 281 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISK 281 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEe
Confidence 34456766 678888889999999999887643332 222 236799999999997 6799999999999999888888
Q ss_pred EecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCC----------------------ee-----------------
Q 012679 220 TLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRD----------------------HI----------------- 259 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~----------------------~~----------------- 259 (458)
... .|.+.|.+++. ....|++|+.|..|..||-.-.. .+
T Consensus 282 ~~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 282 QVH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred Eee-ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 887 49999999998 34455569999999999832110 00
Q ss_pred EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679 260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339 (458)
Q Consensus 260 ~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d 339 (458)
.....+|..+...++.+|+.+++++++.|+.+++|+ ..+. .+.. .-..++.++.|+|.+ .+|.|. ..
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~----~wt~---~~~d~~~~~~fhpsg--~va~Gt--~~ 427 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL----EWTK---IIEDPAECADFHPSG--VVAVGT--AT 427 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce----eEEE---EecCceeEeeccCcc--eEEEee--cc
Confidence 112347888899999999999999999999999999 2222 1122 235678899999976 777765 89
Q ss_pred CeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-ceeeEEEe-CCCCcEEEEEEcCCCCE
Q 012679 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-MVKMAELS-GHTSRVLFMAQSPDGCT 417 (458)
Q Consensus 340 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-~~~~~~~~-~h~~~V~~l~~spdg~~ 417 (458)
|...+.|.++...+.....+.+++.+.|+|+|.+++. |..|+.|+||.+.. +.....+. .|..+|+.+.||+|+++
T Consensus 428 G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv--gs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV--GSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF 505 (626)
T ss_pred ceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEE--ecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce
Confidence 9999999999877777666899999999999999999 77999999999864 44443332 34488999999999999
Q ss_pred EEEEeCCCcEEEEecC
Q 012679 418 VASAAADETLRFWNVF 433 (458)
Q Consensus 418 l~s~s~Dg~i~iW~~~ 433 (458)
|.+-+.|-.|.+|.-.
T Consensus 506 ~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 506 LVSNSGDYEILYWKPS 521 (626)
T ss_pred EEeccCceEEEEEccc
Confidence 9999999999999433
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.2e-23 Score=182.49 Aligned_cols=281 Identities=20% Similarity=0.293 Sum_probs=216.2
Q ss_pred ccceeeccC---CCeEEEEcCCEEEEEECCCCCe--------eeEE-----EecCCCCCEEEEEEcC-CCCEEEEEecCC
Q 012679 143 YLNLLDWGS---SNVLAIALGSTVYLWDASDGTT--------SELV-----TVDDENGPVTSVNWAP-DGRHIAIGLNNC 205 (458)
Q Consensus 143 ~~~~~~~~~---~~~la~~~d~~v~iwd~~~~~~--------~~~~-----~~~~h~~~V~~v~~s~-~g~~la~g~~dg 205 (458)
.+|.++... ..+++++.||.|.+||++...- ..++ .-.+|.-.|.++.|-| |.-.+.+++-|.
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 456665544 5689999999999999985431 1111 1236788899999999 777899999999
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEeC-----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAWN-----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~ 280 (458)
+++|||..+.+....|. ..+.|.+-+|+ ..++++|.++-.|++-|+..+.. ..++.+|.+.|.++.|+|...
T Consensus 125 tlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e 201 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSE 201 (397)
T ss_pred eEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCce
Confidence 99999999999888887 67778777774 36788999999999999998775 789999999999999999766
Q ss_pred E-EEEEECCCcEEEEeCCCCCCC---------CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679 281 Q-LASGGNDNLLHIWDRSMASSN---------SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350 (458)
Q Consensus 281 ~-l~sg~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~ 350 (458)
+ |++|+.||.|++||++....- .....+..-..|.+.|..++|..++.+++..| .|..+++|+..+|
T Consensus 202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g---td~r~r~wn~~~G 278 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG---TDDRIRVWNMESG 278 (397)
T ss_pred eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc---CccceEEeecccC
Confidence 5 689999999999999865220 01111223457889999999999888777665 7889999999988
Q ss_pred CeeEE-E---eC----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679 351 ACLNS-V---DT----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 351 ~~~~~-~---~~----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 422 (458)
+.... + .+ +-.+. +. +.+...++.. - .++.+.++.+-++..+..+.+|-..|.|.++-|+=+...+|.
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~-p-~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLF-P-NDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGD 354 (397)
T ss_pred cccccccccccccccccceEE-Ee-ecccceEEEE-e-cCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccc
Confidence 63211 1 11 11111 22 3333333332 2 358999999999999999999988999999999999999999
Q ss_pred CCCcEEEEecC
Q 012679 423 ADETLRFWNVF 433 (458)
Q Consensus 423 ~Dg~i~iW~~~ 433 (458)
.|+.|..|-..
T Consensus 355 ~d~ni~~w~p~ 365 (397)
T KOG4283|consen 355 MNGNIYMWSPA 365 (397)
T ss_pred cCCcccccccc
Confidence 99999999873
No 112
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.8e-24 Score=185.54 Aligned_cols=247 Identities=19% Similarity=0.300 Sum_probs=186.1
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce------------------------------------eeE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR------------------------------------QLR 219 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~------------------------------------~~~ 219 (458)
+..+++|.+.|++++|+.||++||+++.|+.|+||++.... .+.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 34578999999999999999999999999999999875321 011
Q ss_pred Eec----------------------CCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEE
Q 012679 220 TLR----------------------GGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKW 275 (458)
Q Consensus 220 ~~~----------------------~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~ 275 (458)
.+. ..|...+..+-. ++.+|++++.|..|.+|+++ ++ .+..+......-...+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc-eeeeeccccccccceee
Confidence 000 012333333333 45789999999999999998 44 45666666666777889
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCCCC--CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC---
Q 012679 276 SASGQQLASGGNDNLLHIWDRSMASSN--SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG--- 350 (458)
Q Consensus 276 spd~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~--- 350 (458)
||+|+++|+++..-.|++|.+--.+.. .....+..+++|.++|.+++|+++... +++.+ .||++++||+.-.
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvS--kDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVS--KDGKWRIWDTDVRYEA 313 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEe--cCCcEEEeeccceEec
Confidence 999999999999999999996433221 112236788999999999999997554 45555 9999999997531
Q ss_pred ----CeeEEE-----eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-CCCCcEEEEEEcCCCCEEEE
Q 012679 351 ----ACLNSV-----DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-GHTSRVLFMAQSPDGCTVAS 420 (458)
Q Consensus 351 ----~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s 420 (458)
+.+++. ..++..+.+..+|.|+.|++++| ..|.+|..++++...+++ .|...|.+++|+++|++++|
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g---s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG---SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC---CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence 122222 22455679999999999999875 469999999988877774 58999999999999999998
Q ss_pred EeCCCcEEEEe
Q 012679 421 AAADETLRFWN 431 (458)
Q Consensus 421 ~s~Dg~i~iW~ 431 (458)
+| |..+++..
T Consensus 391 cG-dr~vrv~~ 400 (420)
T KOG2096|consen 391 CG-DRYVRVIR 400 (420)
T ss_pred ec-ceeeeeec
Confidence 75 67788776
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.5e-25 Score=212.94 Aligned_cols=243 Identities=18% Similarity=0.348 Sum_probs=197.5
Q ss_pred ccceeeccC---CCeEEEEcCCEEEEEECCCC-CeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCcee
Q 012679 143 YLNLLDWGS---SNVLAIALGSTVYLWDASDG-TTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQ 217 (458)
Q Consensus 143 ~~~~~~~~~---~~~la~~~d~~v~iwd~~~~-~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~ 217 (458)
.++.+.|+. +.|++++..|.|.+||+... ....+..+..|...|+++.|++ ...+|++|+.||.|++||++..+-
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 455678875 45777778999999999862 2233667889999999999998 567899999999999999999998
Q ss_pred eEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE
Q 012679 218 LRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294 (458)
Q Consensus 218 ~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw 294 (458)
..++.+ ....|..+.|. +..++++...|.+.+||++........+.+|.++|.|+.|+|++.+||+||.|+.|+||
T Consensus 169 ~~t~~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 169 KSTFRS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred cccccc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 888887 88899999994 68999999999999999999888888999999999999999999999999999999999
Q ss_pred eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-CeeEEEeC-CCCeEEEEEcCCCC
Q 012679 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACLNSVDT-GSQVCALLWNKNER 372 (458)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~~~~~~~~-~~~v~~~~~s~~~~ 372 (458)
|....... .+.++ ...++|.++.|-|...+.||+++--.|..|+|||++.. -+..++.. ...++.++|.....
T Consensus 248 d~t~~~~~----~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 248 DMTDSRAK----PKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDR 322 (839)
T ss_pred eccCCCcc----ceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCc
Confidence 99876542 13443 23578999999999999999987668899999999864 34555544 45678888877544
Q ss_pred eEEEEecCCCCcEEEEeCCC
Q 012679 373 ELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~ 392 (458)
.++-+ +..|+.|..-.+++
T Consensus 323 ~~l~s-~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 323 INLWS-CSKDGTVLQHLFKN 341 (839)
T ss_pred eeeEe-ecCccHHHHhhhhc
Confidence 44444 44777766544443
No 114
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-22 Score=174.41 Aligned_cols=239 Identities=18% Similarity=0.290 Sum_probs=201.4
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccC
Q 012679 178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRV 255 (458)
Q Consensus 178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 255 (458)
.+.+|..+++.|.++.+|.+|.+++.|.++.||-..+|+.+.++.+ |.+.|+|+.. +...+++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 4678999999999999999999999999999999999999999998 9999999887 478999999999999999999
Q ss_pred CCeeEEEEcccccceEeEEEcCCCCEEEEEEC-----CCcEEEEeCCCCCCC-CcceeeeeecccccceeEEEecCCCCc
Q 012679 256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGN-----DNLLHIWDRSMASSN-SVTQWLHRLEEHTSAVKAIAWCPFQSN 329 (458)
Q Consensus 256 ~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-----dg~i~iwd~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~ 329 (458)
++.+ ..++ ...+|..+.|+++|++++.... .+.|.++|++..... ....+...+..+...++.+.|.|-+..
T Consensus 84 Gk~l-a~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 84 GKQL-ATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CcEE-EEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 8863 4443 4678999999999999887754 467999999865421 122346777788899999999997665
Q ss_pred EEEEeCCCCCCeEEEEECCCCCeeEEE--eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEE
Q 012679 330 LLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL 407 (458)
Q Consensus 330 ll~s~~g~~d~~i~lwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~ 407 (458)
+++ |. .||.|..||+++|+.+..- .+...|+.++++++..++++ |+.|.+-++||..+.+.+.++. ...+|+
T Consensus 162 ii~-Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT--~s~Dttakl~D~~tl~v~Kty~-te~PvN 235 (327)
T KOG0643|consen 162 IIA-GH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT--GSKDTTAKLVDVRTLEVLKTYT-TERPVN 235 (327)
T ss_pred EEE-ec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe--cccCccceeeeccceeeEEEee-eccccc
Confidence 554 44 9999999999998655443 35678999999999999999 6699999999999999999987 567899
Q ss_pred EEEEcCCCCEEEEEeCCC
Q 012679 408 FMAQSPDGCTVASAAADE 425 (458)
Q Consensus 408 ~l~~spdg~~l~s~s~Dg 425 (458)
+.+++|.-..++.|+...
T Consensus 236 ~aaisP~~d~VilgGGqe 253 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQE 253 (327)
T ss_pred ceecccccceEEecCCce
Confidence 999999877777776543
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=5.7e-24 Score=197.17 Aligned_cols=262 Identities=18% Similarity=0.246 Sum_probs=195.0
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc----eeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLII 249 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~ 249 (458)
-..+.+|...|+++++.|.|-.|++|+.|-.|++||+... +..+.+.......|.+++| .+..|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 4567889999999999999999999999999999998643 3344455446678889999 478888888888999
Q ss_pred EEEccCCCee-----------EEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccc
Q 012679 250 NNDVRVRDHI-----------VETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA 317 (458)
Q Consensus 250 vwd~~~~~~~-----------~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 317 (458)
++|-...... +...+||...++|.+|+|+ ...|++++.||+++|||+................+..-.
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 9986533211 1234589999999999995 457899999999999999876642111000111223446
Q ss_pred eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe--eEEE----eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679 318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC--LNSV----DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 318 v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~----~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
++.++|++++.. +|+|. .||.|.+|+...... ...+ ..+..|+++.|+++|++|++- +.|+++++||++
T Consensus 320 ~tsC~~nrdg~~-iAagc--~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR--g~D~tLKvWDLr 394 (641)
T KOG0772|consen 320 VTSCAWNRDGKL-IAAGC--LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR--GFDDTLKVWDLR 394 (641)
T ss_pred ceeeecCCCcch-hhhcc--cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc--cCCCceeeeecc
Confidence 889999998766 55554 899999999865432 2222 124579999999999999994 479999999998
Q ss_pred Cce-eeEEEeCCC--CcEEEEEEcCCCCEEEEEeC------CCcEEEEecCCCCcccccC
Q 012679 392 SMV-KMAELSGHT--SRVLFMAQSPDGCTVASAAA------DETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 392 ~~~-~~~~~~~h~--~~V~~l~~spdg~~l~s~s~------Dg~i~iW~~~~~~~~~~~~ 442 (458)
..+ ++....+-. .+-+.++|||+.++|+||.. -|++.|||-.+-+.+.+..
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 754 455544433 34578999999999999864 4789999987776665544
No 116
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.1e-23 Score=202.43 Aligned_cols=273 Identities=17% Similarity=0.224 Sum_probs=210.5
Q ss_pred cceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679 144 LNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG 223 (458)
Q Consensus 144 ~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~ 223 (458)
.-+++-+++.+++++.||.|++|+...-.- .-..+..+...|.+++. ++.+|++|+.+++|.+|.+..++.-..+..
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~R 94 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEE-EPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILAR 94 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCccc-CCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccceeee
Confidence 334444457799999999999998765421 11222225677777775 455999999999999999988876544443
Q ss_pred CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 224 GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 224 ~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
...++.+++++ |.+++.|+.|-.|++-++..... ...+.+|..+|.++.|+|++++||+.+-||.|+|||+..+..
T Consensus 95 -ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 95 -FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL 172 (933)
T ss_pred -eeccceEEEEecCCcEEEeecCceeEEEEeccccch-heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh
Confidence 56678888884 67999999999999999987765 688999999999999999999999999999999999998766
Q ss_pred CCcceeeeee-ccc-ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEE
Q 012679 302 NSVTQWLHRL-EEH-TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLS 376 (458)
Q Consensus 302 ~~~~~~~~~~-~~h-~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~ 376 (458)
......+..- ... ...+..++|+|++..+++.+ .|++|++|+..++.....+.. .+.++.+.|+|+|+||++
T Consensus 173 ~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 173 SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred hhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence 3222111111 111 45677899999988888877 799999999999998877754 344999999999999999
Q ss_pred EecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW 430 (458)
++.+|.|.|||..+.+. ......|.+++|.|++..|-.-..-|..-+|
T Consensus 250 --s~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 250 --STLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred --eccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 66999999999998322 2234679999999998877555555655555
No 117
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=205.76 Aligned_cols=240 Identities=13% Similarity=0.282 Sum_probs=189.3
Q ss_pred cccceeeccC--CCeEEEEcCCEEEEEECCC--------------------------------CC---------------
Q 012679 142 YYLNLLDWGS--SNVLAIALGSTVYLWDASD--------------------------------GT--------------- 172 (458)
Q Consensus 142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~--------------------------------~~--------------- 172 (458)
.-+-++.|+. ..++++|.|+.|+||.+.. ..
T Consensus 268 gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~ 347 (712)
T KOG0283|consen 268 GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC 347 (712)
T ss_pred CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcc
Confidence 3466777765 5688889999999998755 00
Q ss_pred -----------eeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCe
Q 012679 173 -----------TSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHI 238 (458)
Q Consensus 173 -----------~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~ 238 (458)
..+++.+.+|.+.|.++.||.++ +|++++.|.+|+||++...+++..|. |..-|+|++|+ .++
T Consensus 348 ~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 348 VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRY 424 (712)
T ss_pred ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCc
Confidence 02344567999999999999764 89999999999999999999999998 99999999995 589
Q ss_pred EEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee-ee--eecccc
Q 012679 239 LTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW-LH--RLEEHT 315 (458)
Q Consensus 239 l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~--~~~~h~ 315 (458)
+++|+-||.|+||++...+ +.....-..-|++++|.|||++.++|+.+|.+++|+....+....... .+ +-..|.
T Consensus 425 FiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred EeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 9999999999999997554 344444458899999999999999999999999999887654211100 00 001233
Q ss_pred cceeEEEecCCCCc-EEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679 316 SAVKAIAWCPFQSN-LLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 316 ~~v~~l~~~p~~~~-ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
.|+.+.|.|.... +|++. .|..|||+|.++..++..++. ...-....|+.+|++|+++ .+|..|+||++.
T Consensus 503 -rITG~Q~~p~~~~~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~--seDs~VYiW~~~ 576 (712)
T KOG0283|consen 503 -RITGLQFFPGDPDEVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA--SEDSWVYIWKND 576 (712)
T ss_pred -eeeeeEecCCCCCeEEEec---CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe--ecCceEEEEeCC
Confidence 7999999986655 66654 899999999988888877764 2334567788999999995 499999999984
Q ss_pred C
Q 012679 392 S 392 (458)
Q Consensus 392 ~ 392 (458)
.
T Consensus 577 ~ 577 (712)
T KOG0283|consen 577 S 577 (712)
T ss_pred C
Confidence 4
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=200.76 Aligned_cols=243 Identities=25% Similarity=0.411 Sum_probs=202.5
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE--EecCCCcccEEE-EEe---CCCeEEEEeCCCcEE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR--TLRGGHRSRVGS-LAW---NNHILTTGGMDGLII 249 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~--~~~~~~~~~v~~-l~~---~~~~l~sg~~dg~i~ 249 (458)
.+.+.+|...|..++..+. ..+++++.||++++|+-...+.+. .+.+ |.+-|.+ +++ ++..|++|+.|+.|.
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~-~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEG-PKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceeccc-CcceeeccceeccccCcceEeecccceEE
Confidence 5678899999999987754 478999999999999976665544 2333 6666666 666 356799999999999
Q ss_pred EEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCc
Q 012679 250 NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN 329 (458)
Q Consensus 250 vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 329 (458)
+|...... +...+.+|.+.||+++...++. +++||.|.++++|-.... ...+.+|++.|++++.-|.+
T Consensus 85 v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--------~~~l~gH~asVWAv~~l~e~-- 152 (745)
T KOG0301|consen 85 VFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--------VYSLQGHTASVWAVASLPEN-- 152 (745)
T ss_pred EEecCCCC-chhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--------hcccCCcchheeeeeecCCC--
Confidence 99998666 4789999999999999888887 999999999999986543 45588999999999999964
Q ss_pred EEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEE
Q 012679 330 LLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLF 408 (458)
Q Consensus 330 ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 408 (458)
.+++|+ .|++|++|.- +++++++..+ .-|..+++-+++.++-+ + .||.|++|++ +++.+.++.||+.-|.+
T Consensus 153 ~~vTgs--aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flSc--s-NDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 153 TYVTGS--ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSC--S-NDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred cEEecc--CcceeeeccC--CchhhhhccchhheeeeEEecCCCeEee--c-CCceEEEEec-cCceeeeeeccceEEEE
Confidence 777776 9999999985 7788888654 56899999988777654 2 7999999999 88999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 409 MAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 409 l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
+....++..++++++|++++||+...-.+...
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~ 256 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKDECVQVIT 256 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecCceEEEEe
Confidence 99888889999999999999999874444433
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4e-23 Score=189.33 Aligned_cols=280 Identities=16% Similarity=0.300 Sum_probs=221.5
Q ss_pred ccccceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCcee
Q 012679 141 DYYLNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQ 217 (458)
Q Consensus 141 d~~~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~ 217 (458)
...++++.|++. -+++++.|+.++||.++......+..+.-...+|.+..|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 346889999984 58999999999999987655555566555678999999999999 889999999999999988775
Q ss_pred eEE--ecCCCc-ccEE--EEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 218 LRT--LRGGHR-SRVG--SLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 218 ~~~--~~~~~~-~~v~--~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
... +.+ +. ..+. .++-++++|+..+..|.|.+.-..+++. +..++ -.+.|..++|+.|++.|++++.+|.|.
T Consensus 293 ~k~~~~~g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 293 TKLKPPYG-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccCCCC-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence 432 222 33 2223 3444689999999999999998887764 34443 367899999999999999999999999
Q ss_pred EEeCCCCCCCCcceeeeeecccccce--eEEEecCCCCcEEEEeCCCCCCeEEEEECCC------CCeeEEEe-CCCCeE
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAV--KAIAWCPFQSNLLATGGGGGDRCIKFWNTHT------GACLNSVD-TGSQVC 363 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~------~~~~~~~~-~~~~v~ 363 (458)
+||++.... ++++.. .+.| ++++.++++ .++|+|+ ..|.|.|||..+ .+++..+. ....|+
T Consensus 370 v~nl~~~~~------~~rf~D-~G~v~gts~~~S~ng-~ylA~GS--~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~It 439 (514)
T KOG2055|consen 370 VWNLRQNSC------LHRFVD-DGSVHGTSLCISLNG-SYLATGS--DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAIT 439 (514)
T ss_pred EEecCCcce------EEEEee-cCccceeeeeecCCC-ceEEecc--CcceEEEeccchhhccCCCCchhhhhhhheeee
Confidence 999998866 566543 2333 456666754 4888876 999999999654 34555443 356799
Q ss_pred EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC---CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH---TSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h---~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
++.|+++...|+.++....+.+++-.+++......+... -+.|+||+|||.|.+||.|..+|.|.+|.+.
T Consensus 440 sl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 440 SLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999999988778999999999998887776543 3569999999999999999999999999874
No 120
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-23 Score=192.80 Aligned_cols=259 Identities=19% Similarity=0.287 Sum_probs=209.9
Q ss_pred cceeeccCCC-eEEEE--cCCEEEEEECC--CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679 144 LNLLDWGSSN-VLAIA--LGSTVYLWDAS--DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 144 ~~~~~~~~~~-~la~~--~d~~v~iwd~~--~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~ 218 (458)
++.+.|+..+ +++++ .|..+.+|.-. ++++..+....+. .-.|++......|+++|+..+.|+|||+....+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 5678898876 44443 35678888643 3334444444332 4556666666689999999999999999966666
Q ss_pred EEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCE-EEEEECCCcEEEE
Q 012679 219 RTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQ-LASGGNDNLLHIW 294 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~-l~sg~~dg~i~iw 294 (458)
+.+.. |...|+++.++ ..+|++++..|.|.+..+.++... ..+. +..+.|.-+.|+|..+. |.+++.+|.|.+|
T Consensus 115 r~lkd-h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t-t~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 115 RFLKD-HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT-TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hhccC-CcceeEEEEecCCcceeEEeccCCcEEEEecccCccc-cceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 66666 99999999995 689999999999999999887753 3333 33556778999997665 5788999999999
Q ss_pred eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeE
Q 012679 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL 374 (458)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 374 (458)
|....... .+-...|.++...|+|+|.++.++++.| .|..|.+||+...+....+....+...++|.++|.+|
T Consensus 193 Dv~g~sp~-----~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L 265 (673)
T KOG4378|consen 193 DVQGMSPI-----FHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYL 265 (673)
T ss_pred eccCCCcc-----cchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEE
Confidence 99877652 3455689999999999999999999988 9999999999999999999889999999999999999
Q ss_pred EEEecCCCCcEEEEeCCC-ceeeEEEeCCCCcEEEEEEcCCC
Q 012679 375 LSSHGFTQNQLTLWKYPS-MVKMAELSGHTSRVLFMAQSPDG 415 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg 415 (458)
++ |...|.|..||++. ..++..+..|...|++++|-|..
T Consensus 266 ~a--G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 266 CA--GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred Ee--ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99 88999999999986 46788889999999999997754
No 121
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=5.4e-23 Score=188.35 Aligned_cols=284 Identities=17% Similarity=0.214 Sum_probs=215.0
Q ss_pred cccceeeccC--C-C-eEEEEcCCEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCC
Q 012679 142 YYLNLLDWGS--S-N-VLAIALGSTVYLWDASD--GTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTA 214 (458)
Q Consensus 142 ~~~~~~~~~~--~-~-~la~~~d~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~ 214 (458)
..+.++.|+| + . +++|...|.|-+||+.+ .....+..+..|..+|.++.|+| +-..+++.+.||+|++-|++.
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 3577899998 2 3 45555679999999952 22334566778999999999999 556889999999999999987
Q ss_pred ceeeEEecC-CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC-CCEEEEEECCCc
Q 012679 215 NRQLRTLRG-GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNL 290 (458)
Q Consensus 215 ~~~~~~~~~-~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~ 290 (458)
+..-..+.. .....+..+.++ ...++.|..-|...+||.++.......+.-|...|++++++|- ..+||+||.|++
T Consensus 267 ~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 267 NISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT 346 (498)
T ss_pred hhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc
Confidence 653322221 133455566663 4566677777799999999988777788889999999999994 567899999999
Q ss_pred EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC----CCCCeeEEEeCCCC-----
Q 012679 291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT----HTGACLNSVDTGSQ----- 361 (458)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~----~~~~~~~~~~~~~~----- 361 (458)
++|||++....... ++.....|...|.+..|+|.+..++.++ .|..|+|||. ....+..++.+...
T Consensus 347 ~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl 421 (498)
T KOG4328|consen 347 AKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL 421 (498)
T ss_pred eeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeec---cCCceEEeecccccccCCccceeeccCcccccc
Confidence 99999998765432 2344558999999999999999966665 8999999998 44556666665432
Q ss_pred -eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC-cEEE-EEEcCCCCEEEEEe-CCCcEEEEec
Q 012679 362 -VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS-RVLF-MAQSPDGCTVASAA-ADETLRFWNV 432 (458)
Q Consensus 362 -v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~-~V~~-l~~spdg~~l~s~s-~Dg~i~iW~~ 432 (458)
.....|.|+..++++ |..-..|-|+|-..++.+.++..... .|.+ ..|+|-+..+++|+ ..|.|.||--
T Consensus 422 T~fKA~W~P~~~li~v--g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 422 TPFKAAWDPDYNLIVV--GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cchhheeCCCccEEEE--eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 446689999988888 66777899999999998888755443 4444 47999887555554 5788888853
No 122
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=177.81 Aligned_cols=278 Identities=16% Similarity=0.214 Sum_probs=211.7
Q ss_pred cceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 144 LNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 144 ~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
.+++.|+. ..++.|+.+|.|.|||..+..+ -..+.+|..+|++++||+||+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 56677776 4567777899999999998876 5567889999999999999999999999999999999999999999
Q ss_pred cCCCcccEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeEEEEcc---cccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679 222 RGGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRG---HNQEVCGLKWSASGQQLASGGNDNLLHIWD 295 (458)
Q Consensus 222 ~~~~~~~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~l~~spd~~~l~sg~~dg~i~iwd 295 (458)
. ..++|....|++ +..++.-.+..-.+-++..+.+.+..... -.....+..|.+.|+++++|...|.+.++|
T Consensus 104 r--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 104 R--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred E--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 8 889999999953 44444444444555555543321111111 111122346889999999999999999999
Q ss_pred CCCCCCCCcceeeeeecccc-cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-------Cee--EEE---eCCCCe
Q 012679 296 RSMASSNSVTQWLHRLEEHT-SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-------ACL--NSV---DTGSQV 362 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-------~~~--~~~---~~~~~v 362 (458)
..+.+. +..++-.. ..|+.+.++-.+..++.-. .|+.||.|+++.- ++. +.+ -...+-
T Consensus 182 a~t~e~------vas~rits~~~IK~I~~s~~g~~liiNt---sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 182 AETLEC------VASFRITSVQAIKQIIVSRKGRFLIINT---SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred cchhee------eeeeeechheeeeEEEEeccCcEEEEec---CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 998766 55555444 7899999998766666644 7999999998631 111 111 123456
Q ss_pred EEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 363 CALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT-SRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 363 ~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
.+++|+.+|.++++++ .....++||.-..|..+..+.|.. .....+.|+|-...|++- ..|.+++|.+...+
T Consensus 253 k~ccfs~dgeYv~a~s-~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGS-ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred hheeecCCccEEEecc-ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 7889999999999875 467889999999999999999887 567889999998888877 78999999985443
No 123
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=3.9e-23 Score=179.38 Aligned_cols=223 Identities=22% Similarity=0.375 Sum_probs=179.5
Q ss_pred cCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCcee----------eE----EecCCCcccEEEEEe---CCCeEEE
Q 012679 180 DDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQ----------LR----TLRGGHRSRVGSLAW---NNHILTT 241 (458)
Q Consensus 180 ~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~----------~~----~~~~~~~~~v~~l~~---~~~~l~s 241 (458)
..|.+.|.++...+ .|+|+++|+.||.|.|||++.... +. .-..+|.-.|.++.| +..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35789999999988 799999999999999999875431 11 112358888999999 6789999
Q ss_pred EeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC---CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccce
Q 012679 242 GGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS---GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV 318 (458)
Q Consensus 242 g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v 318 (458)
++.|.+++|||..+.+.. ..+ ...+.|.+-+|+|- .-++|+|..|-.|++-|+.++.. .+.+.+|...|
T Consensus 120 sSFDhtlKVWDtnTlQ~a-~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~------sH~LsGHr~~v 191 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEA-VDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF------SHTLSGHRDGV 191 (397)
T ss_pred ccccceEEEeecccceee-EEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc------eeeeccccCce
Confidence 999999999999887652 223 24567888888883 45789999999999999999988 89999999999
Q ss_pred eEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-CeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee--
Q 012679 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK-- 395 (458)
Q Consensus 319 ~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~-- 395 (458)
.++.|+|...++|++|+ .||.|++||++.. .|+..++ ..+++.
T Consensus 192 laV~Wsp~~e~vLatgs--aDg~irlWDiRrasgcf~~lD--------------------------------~hn~k~~p 237 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGS--ADGAIRLWDIRRASGCFRVLD--------------------------------QHNTKRPP 237 (397)
T ss_pred EEEEeccCceeEEEecC--CCceEEEEEeecccceeEEee--------------------------------cccCccCc
Confidence 99999999999999987 9999999999864 3444433 222211
Q ss_pred -eEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679 396 -MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444 (458)
Q Consensus 396 -~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~ 444 (458)
+.+-..|.+.|..++|+.||.++++++.|..+++|+..++....+...+
T Consensus 238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~ 287 (397)
T KOG4283|consen 238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGP 287 (397)
T ss_pred cccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccc
Confidence 1223479999999999999999999999999999999988776654433
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.1e-22 Score=173.53 Aligned_cols=249 Identities=18% Similarity=0.342 Sum_probs=190.3
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc----eeeEEecCCCcccEEEEEe-C---CCeEEEEeCCCcEEEE
Q 012679 180 DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----RQLRTLRGGHRSRVGSLAW-N---NHILTTGGMDGLIINN 251 (458)
Q Consensus 180 ~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~v~~l~~-~---~~~l~sg~~dg~i~vw 251 (458)
.+|.+-|.++.|.+.|+++|+|+.|++|+|||.... .+....+. |.+.|..+.| + |..+++++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccceEEEEecCCceeee
Confidence 468889999999999999999999999999996433 34555666 9999999999 2 7899999999999999
Q ss_pred EccCCC--------eeEEEEcccccceEeEEEcC--CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec-------cc
Q 012679 252 DVRVRD--------HIVETYRGHNQEVCGLKWSA--SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-------EH 314 (458)
Q Consensus 252 d~~~~~--------~~~~~~~~h~~~v~~l~~sp--d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h 314 (458)
.-.... ....++....+.|+.++|.| -|-.||+++.||.++||+.-...........+.+. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 752111 12456667788999999999 47789999999999999976654432222233333 45
Q ss_pred ccceeEEEecCC--CCcEEEEeCCCCC-----CeEEEEECCCCC----eeEEE-eCCCCeEEEEEcCCC----CeEEEEe
Q 012679 315 TSAVKAIAWCPF--QSNLLATGGGGGD-----RCIKFWNTHTGA----CLNSV-DTGSQVCALLWNKNE----RELLSSH 378 (458)
Q Consensus 315 ~~~v~~l~~~p~--~~~ll~s~~g~~d-----~~i~lwd~~~~~----~~~~~-~~~~~v~~~~~s~~~----~~l~~~~ 378 (458)
.....|+.|+|. ...++|.|+ .+ +.++||....+. .+.++ .+..+|+.++|.|+- ..|++
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv-- 244 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV-- 244 (361)
T ss_pred cCcceEEeeccccccCceEEEEc--ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE--
Confidence 667789999973 346788875 32 378888765533 22222 457789999999963 33444
Q ss_pred cCCCCcEEEEeCCC--------------------ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 379 GFTQNQLTLWKYPS--------------------MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 379 g~~d~~i~iwd~~~--------------------~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
+..|| |+||++.. -+.+.++.+|.+.|..+.|+-.|..|++.|.||.||+|...-
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 55788 99999862 135667889999999999999999999999999999998653
No 125
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=185.05 Aligned_cols=268 Identities=22% Similarity=0.347 Sum_probs=201.5
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-------CCCEEEEEecCCeEEEEeCCCcee---eEE-----------
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAP-------DGRHIAIGLNNCQVQLWDSTANRQ---LRT----------- 220 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-------~g~~la~g~~dg~v~iwd~~~~~~---~~~----------- 220 (458)
.||||+-....+.....+-- .....|++|.. -|+|+|+|+.|..|.|||+.-... ..+
T Consensus 153 EvYVyn~~e~nlYvHHD~il-pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k 231 (463)
T KOG0270|consen 153 EVYVYNEEEENLYVHHDFIL-PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKK 231 (463)
T ss_pred EEEEEcCCCcceeEecceec-cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhh
Confidence 57888765544321111111 23446888854 368999999999999999742110 000
Q ss_pred ------ecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCc
Q 012679 221 ------LRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNL 290 (458)
Q Consensus 221 ------~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~ 290 (458)
...+|...|.+|+|+ .++|++|+.|.+|++||+.++++ ..++..|...|.++.|+| ...+|++|+.|++
T Consensus 232 ~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 232 KGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred hcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccce
Confidence 012488999999997 48999999999999999998885 677788999999999999 4678899999999
Q ss_pred EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-CeeEEEe-CCCCeEEEEEc
Q 012679 291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACLNSVD-TGSQVCALLWN 368 (458)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~~~~~~~-~~~~v~~~~~s 368 (458)
|.+.|.+.... ....-...+.|..++|.|.....+.++. .||+++-+|++.. +++.++. |..+|.+++++
T Consensus 311 V~l~D~R~~~~------s~~~wk~~g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n 382 (463)
T KOG0270|consen 311 VALKDCRDPSN------SGKEWKFDGEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVN 382 (463)
T ss_pred EEeeeccCccc------cCceEEeccceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEeccCCcceEEec
Confidence 99999996433 1111224578999999999998888876 9999999999985 8888875 56789999999
Q ss_pred CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC---CCcEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCCccccc
Q 012679 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH---TSRVLFMAQSPDGC-TVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h---~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
..-..++++ +..++.+++|++..-...... .| -++..|.++.|+-. +++.||..+.++|||+.....+.+.
T Consensus 383 ~~~p~~l~t-~s~d~~Vklw~~~~~~~~~v~-~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ka 457 (463)
T KOG0270|consen 383 IQTPGLLST-ASTDKVVKLWKFDVDSPKSVK-EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKA 457 (463)
T ss_pred CCCCcceee-ccccceEEEEeecCCCCcccc-cccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHh
Confidence 999988887 568999999998754432211 12 24567788888644 5677888888999999987766543
No 126
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.3e-21 Score=181.15 Aligned_cols=294 Identities=16% Similarity=0.223 Sum_probs=227.2
Q ss_pred ccccceeeccC---CCeEEEEc---CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 012679 141 DYYLNLLDWGS---SNVLAIAL---GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA 214 (458)
Q Consensus 141 d~~~~~~~~~~---~~~la~~~---d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~ 214 (458)
+--+.+++|++ +.++.+-. +..+.+||...+.. +...+.-++.|..+.|+|.+..|++....|.+.+|+.+.
T Consensus 154 ~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~--~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 154 DRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK--LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred cccceeeeecccCCCceEEEecCCCccccchhhchhhhc--cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 34577888876 34444433 34789999987665 444444567899999999777677777788999999998
Q ss_pred ceeeEE---ecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCc
Q 012679 215 NRQLRT---LRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNL 290 (458)
Q Consensus 215 ~~~~~~---~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~ 290 (458)
+...++ +.......|.|++|. +.-+++|..+|.|.||+..+... .+....|.+.|.+++.-.+|.+|- |+.|..
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~-~k~~~aH~ggv~~L~~lr~GtllS-GgKDRk 309 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRI-SKQVHAHDGGVFSLCMLRDGTLLS-GGKDRK 309 (626)
T ss_pred CceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceE-EeEeeecCCceEEEEEecCccEee-cCccce
Confidence 866554 344345789999994 57789999999999999976654 444459999999999999997655 999999
Q ss_pred EEEEeCCCCCCCCc----------------------------------ceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679 291 LHIWDRSMASSNSV----------------------------------TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG 336 (458)
Q Consensus 291 i~iwd~~~~~~~~~----------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g 336 (458)
|..||-.-.+.... ........+|......++.+|+ ..++++++
T Consensus 310 i~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-~~q~~T~g- 387 (626)
T KOG2106|consen 310 IILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-KNQLLTCG- 387 (626)
T ss_pred EEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC-hhheeecc-
Confidence 99999322211000 0001233468888899999996 55556666
Q ss_pred CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC
Q 012679 337 GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC 416 (458)
Q Consensus 337 ~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~ 416 (458)
.|+.+++|+ ..+++.+.....+..++.|+|.| .+++ |+..|...+.|.++...+..-.. ..+++.++|+|+|.
T Consensus 388 -qdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~--Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 388 -QDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAV--GTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA 460 (626)
T ss_pred -CcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEE--eeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC
Confidence 999999999 77788888889999999999999 6666 77899999999999666555444 88999999999999
Q ss_pred EEEEEeCCCcEEEEecCCCCcccccCCCCCC
Q 012679 417 TVASAAADETLRFWNVFGAPQVISKSAPKPN 447 (458)
Q Consensus 417 ~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~~ 447 (458)
+||.|+.|+.|+||.+.......+...+..+
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred EEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 9999999999999999988877777666655
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.4e-23 Score=175.33 Aligned_cols=247 Identities=18% Similarity=0.317 Sum_probs=194.5
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc---eeeEEecCCCcccEEEEEe-C---CCeEEEEeCCCcEEEEE
Q 012679 180 DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN---RQLRTLRGGHRSRVGSLAW-N---NHILTTGGMDGLIINND 252 (458)
Q Consensus 180 ~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~---~~~~~~~~~~~~~v~~l~~-~---~~~l~sg~~dg~i~vwd 252 (458)
..|.+.|.++...-.|++||+++.|++|+|+.+..+ +.+.++.+ |.++|..++| + |.+|++++.||.|.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 468888999988889999999999999999998765 45677877 9999999999 4 78999999999999999
Q ss_pred ccCCCe-eEEEEcccccceEeEEEcC--CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC-
Q 012679 253 VRVRDH-IVETYRGHNQEVCGLKWSA--SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS- 328 (458)
Q Consensus 253 ~~~~~~-~~~~~~~h~~~v~~l~~sp--d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~- 328 (458)
-..+.- .......|...|++++|.| .|-.||+++.||.|.|.+++....-.. ......|.-.|++++|.|-..
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t---~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT---SKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc---hhhhhccccccceeeecCcCCC
Confidence 876642 1234568999999999988 477899999999999999887622111 234568999999999999521
Q ss_pred ------------cEEEEeCCCCCCeEEEEECCCCCee--EEEe-CCCCeEEEEEcCCC----CeEEEEecCCCCcEEEEe
Q 012679 329 ------------NLLATGGGGGDRCIKFWNTHTGACL--NSVD-TGSQVCALLWNKNE----RELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 329 ------------~ll~s~~g~~d~~i~lwd~~~~~~~--~~~~-~~~~v~~~~~s~~~----~~l~~~~g~~d~~i~iwd 389 (458)
.-|++|| .|..|++|+..++.-+ .++. +..-|..++|.|.- .+|++ +..||.+.||.
T Consensus 164 g~~~~~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS--~SqDg~viIwt 239 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS--CSQDGTVIIWT 239 (299)
T ss_pred ccccccCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE--ecCCCcEEEEE
Confidence 3478876 9999999999887422 2233 34569999999975 33444 55899999998
Q ss_pred CCCc--e-eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 390 YPSM--V-KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 390 ~~~~--~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
.... . ....++.....+..+.||..|+.|+.++.|+.|.+|.-..
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 7632 1 1222344567899999999999999999999999997543
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.8e-24 Score=207.80 Aligned_cols=212 Identities=25% Similarity=0.483 Sum_probs=190.4
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 231 (458)
..++.|+.+..+-+|.+..-. .+..+.+|..+|.++.|+++..+|+.|+.+|+|++||++..+.++++.+ |...+.+
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp~--~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg-h~~~~~s 117 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKPN--AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG-HLLNITS 117 (825)
T ss_pred eeeccCCCceeeccccccCCc--hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhc-cccCcce
Confidence 456777778888899876443 3667889999999999999999999999999999999999999999998 9999999
Q ss_pred EEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeee
Q 012679 232 LAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLH 309 (458)
Q Consensus 232 l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 309 (458)
+.|+ +.+.++|+.|+.+++||++..++ ...+.+|...|..+.|+|+|+++++|+.|..++|||...++. +.
T Consensus 118 v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~------~~ 190 (825)
T KOG0267|consen 118 VDFHPYGEFFASGSTDTDLKIWDIRKKGC-SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL------SK 190 (825)
T ss_pred eeeccceEEeccccccccceehhhhccCc-eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc------cc
Confidence 9997 47888999999999999997664 788889999999999999999999999999999999998887 78
Q ss_pred eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEE
Q 012679 310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLS 376 (458)
Q Consensus 310 ~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~ 376 (458)
.|..|.+.+.++.|+| ...++++|+ .|+++++||+++.+.+...+. ...|.+..|++++..+++
T Consensus 191 ef~~~e~~v~sle~hp-~e~Lla~Gs--~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 191 EFKSHEGKVQSLEFHP-LEVLLAPGS--SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred ccccccccccccccCc-hhhhhccCC--CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec
Confidence 8999999999999999 588888877 999999999999888877655 457999999999999887
No 129
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=3e-22 Score=192.14 Aligned_cols=288 Identities=16% Similarity=0.269 Sum_probs=218.3
Q ss_pred eeccC--CCeEEEEcCCEEEEEECCCCC-eeeEEEecCCCCCEEEEEEcCC-----------CCEEEEEecCCeEEEEeC
Q 012679 147 LDWGS--SNVLAIALGSTVYLWDASDGT-TSELVTVDDENGPVTSVNWAPD-----------GRHIAIGLNNCQVQLWDS 212 (458)
Q Consensus 147 ~~~~~--~~~la~~~d~~v~iwd~~~~~-~~~~~~~~~h~~~V~~v~~s~~-----------g~~la~g~~dg~v~iwd~ 212 (458)
+.|++ ..+.++-.|..+||||+.+-+ +.+...+-.|...|+.|.--|. ...+++++.||+|++||+
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l 409 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDL 409 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeec
Confidence 44554 568888899999999998632 2334445568888888876551 124889999999999998
Q ss_pred CCceeeEEec------------------------------------CCCcccEEEEEe--CCCeEEEEeCCCcEEEEEcc
Q 012679 213 TANRQLRTLR------------------------------------GGHRSRVGSLAW--NNHILTTGGMDGLIINNDVR 254 (458)
Q Consensus 213 ~~~~~~~~~~------------------------------------~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 254 (458)
..+..-..+. ......+.+++. ++.+|++|..-|+++|||+.
T Consensus 410 ~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq 489 (1080)
T KOG1408|consen 410 AFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQ 489 (1080)
T ss_pred ccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEeh
Confidence 7532111100 012335666666 68999999999999999998
Q ss_pred CCCeeEEEEcccccceEeEEEcC---CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC-cE
Q 012679 255 VRDHIVETYRGHNQEVCGLKWSA---SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS-NL 330 (458)
Q Consensus 255 ~~~~~~~~~~~h~~~v~~l~~sp---d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l 330 (458)
.... ...+..|..+|.|+.|+. ..++||+++.|..|+|||....-. +++++.+|...|+++.|.-.+. .-
T Consensus 490 ~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-----l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 490 ELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-----LVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred hhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-----hhhhhcccccceeEEEEeecCCceE
Confidence 6654 567889999999999986 457899999999999999865433 3788999999999999977653 34
Q ss_pred EEEeCCCCCCeEEEEECCCCCeeEEE------eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC---
Q 012679 331 LATGGGGGDRCIKFWNTHTGACLNSV------DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--- 401 (458)
Q Consensus 331 l~s~~g~~d~~i~lwd~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--- 401 (458)
++++| .|+.|.+--.+...-...+ -....+..+...|..++++++ +.|..|+||++.+++++..|++
T Consensus 564 MiscG--ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~--cQDrnirif~i~sgKq~k~FKgs~~ 639 (1080)
T KOG1408|consen 564 MISCG--ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV--CQDRNIRIFDIESGKQVKSFKGSRD 639 (1080)
T ss_pred EEecc--CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE--ecccceEEEeccccceeeeeccccc
Confidence 55555 7888766443321111111 123458899999999999995 4899999999999999999975
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679 402 HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444 (458)
Q Consensus 402 h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~ 444 (458)
|.+....+...|.|-||++.+.|.+|.|+|+..++.+...-..
T Consensus 640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 5677889999999999999999999999999999887765433
No 130
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=1.8e-23 Score=182.59 Aligned_cols=208 Identities=21% Similarity=0.356 Sum_probs=176.1
Q ss_pred CcccEEEEEe--CCCeEEEEeCCCcEEEEEccC-----------------CCeeEEEEcccccceEeEEEcCCCCEEEEE
Q 012679 225 HRSRVGSLAW--NNHILTTGGMDGLIINNDVRV-----------------RDHIVETYRGHNQEVCGLKWSASGQQLASG 285 (458)
Q Consensus 225 ~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-----------------~~~~~~~~~~h~~~v~~l~~spd~~~l~sg 285 (458)
|.+++.+.+| +|.++++|+.|..|++.|++. ...+++++..|..+|+++.|+|....|++|
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 9999999999 589999999999999999871 113577888999999999999999999999
Q ss_pred ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC----CCC
Q 012679 286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT----GSQ 361 (458)
Q Consensus 286 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~----~~~ 361 (458)
+.|++|++||+........ .+.-....+|.++.|+|.|..+++ |+.-.++++||+.+.+|...-.. ...
T Consensus 191 srD~tvKlFDfsK~saKrA----~K~~qd~~~vrsiSfHPsGefllv---gTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRA----FKVFQDTEPVRSISFHPSGEFLLV---GTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred cCCCeEEEEecccHHHHHH----HHHhhccceeeeEeecCCCceEEE---ecCCCceeEEeccceeEeeecCcccccccc
Confidence 9999999999987655322 222234678999999997776666 34788999999999998876643 456
Q ss_pred eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-CCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 012679 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-GHT-SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVI 439 (458)
Q Consensus 362 v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-~h~-~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~ 439 (458)
|+++.+++.++..++ |..||.|+|||--+.+++.++. .|. ..|.+..|..+|++|++.|.|..+++|.+.++..+.
T Consensus 264 i~~V~Ys~t~~lYvT--aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVT--ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred eeEEEecCCccEEEE--eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 999999999999998 5699999999999999988874 566 459999999999999999999999999999988776
Q ss_pred cc
Q 012679 440 SK 441 (458)
Q Consensus 440 ~~ 441 (458)
..
T Consensus 342 ~Y 343 (430)
T KOG0640|consen 342 EY 343 (430)
T ss_pred EE
Confidence 54
No 131
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=178.27 Aligned_cols=263 Identities=18% Similarity=0.294 Sum_probs=216.0
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 231 (458)
.++++.-.++++ ....+..+.+|.+.|..++-......+.+++.|.+.+||.++++.++.++.+ |.+.|++
T Consensus 125 srivssFk~~t~--------~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNs 195 (481)
T KOG0300|consen 125 SRIVSSFKDGTV--------KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-HTGSVNS 195 (481)
T ss_pred chheeeecCCce--------eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-cccceee
Confidence 445555555553 2233567889999999999888778999999999999999999999999998 9999999
Q ss_pred EEeC--CCeEEEEeCCCcEEEEE------ccCC---------------------------------CeeEEEEcccccce
Q 012679 232 LAWN--NHILTTGGMDGLIINND------VRVR---------------------------------DHIVETYRGHNQEV 270 (458)
Q Consensus 232 l~~~--~~~l~sg~~dg~i~vwd------~~~~---------------------------------~~~~~~~~~h~~~v 270 (458)
+.|+ +.++++++.|++-.||. +... ..++..+.+|...|
T Consensus 196 ikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV 275 (481)
T KOG0300|consen 196 IKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVV 275 (481)
T ss_pred EEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccce
Confidence 9995 68899999999999996 2110 01245677999999
Q ss_pred EeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350 (458)
Q Consensus 271 ~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~ 350 (458)
.+..|-..|+.+++++.|.+..+||++++.. ++.+.+|....+.++-+|. ..|+++.+ .|.+.++||++..
T Consensus 276 ~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~------v~~LtGHd~ELtHcstHpt-QrLVvTsS--rDtTFRLWDFRea 346 (481)
T KOG0300|consen 276 SACDWLAGGQQMVTASWDRTANLWDVETGEV------VNILTGHDSELTHCSTHPT-QRLVVTSS--RDTTFRLWDFREA 346 (481)
T ss_pred EehhhhcCcceeeeeeccccceeeeeccCce------eccccCcchhccccccCCc-ceEEEEec--cCceeEeccchhh
Confidence 9999999999999999999999999999987 8899999999999999995 56667766 9999999999843
Q ss_pred -CeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 012679 351 -ACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KMAELSGHTSRVLFMAQSPDGCTVASAAADETL 427 (458)
Q Consensus 351 -~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i 427 (458)
..+..+.. ...|++..|..+.+.+ + |.+|.+|+|||++++. ++.++. ..++++.++.+..+..|+.--.+..|
T Consensus 347 I~sV~VFQGHtdtVTS~vF~~dd~vV-S--gSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqv 422 (481)
T KOG0300|consen 347 IQSVAVFQGHTDTVTSVVFNTDDRVV-S--GSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQV 422 (481)
T ss_pred cceeeeecccccceeEEEEecCCcee-e--cCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceE
Confidence 23444544 4569999999877644 4 7799999999999875 566665 56789999999888899988888999
Q ss_pred EEEecCCCC
Q 012679 428 RFWNVFGAP 436 (458)
Q Consensus 428 ~iW~~~~~~ 436 (458)
++||+.+..
T Consensus 423 RlfDlnG~R 431 (481)
T KOG0300|consen 423 RLFDLNGNR 431 (481)
T ss_pred EEEecCCCc
Confidence 999997654
No 132
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=2.3e-22 Score=183.05 Aligned_cols=235 Identities=20% Similarity=0.317 Sum_probs=201.0
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEE
Q 012679 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVE 261 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~ 261 (458)
..++++...|....+++|+.|..+.++|...++.+..+.+ |...|+.+.+++ ..+++++.|..|+||....... ..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-~~ 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-PT 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchhheeecCCcceEEeeccccccC-cc
Confidence 4588888888878899999999999999999999999998 999999999974 6788999999999999876664 56
Q ss_pred EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc--cccceeEEEecCCCCcEEEEeCCCCC
Q 012679 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE--HTSAVKAIAWCPFQSNLLATGGGGGD 339 (458)
Q Consensus 262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~ll~s~~g~~d 339 (458)
....|..+|+.+..+|.|.||+++++|++..+.|++++.. +..... ..-.+++++|+|| +.+|.+|. .|
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~------lt~vs~~~s~v~~ts~~fHpD-gLifgtgt--~d 368 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ------LTVVSDETSDVEYTSAAFHPD-GLIFGTGT--PD 368 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE------EEEEeeccccceeEEeeEcCC-ceEEeccC--CC
Confidence 6778999999999999999999999999999999999876 333322 2345899999996 66777765 99
Q ss_pred CeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC-CcEEEEEEcCCCCE
Q 012679 340 RCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT-SRVLFMAQSPDGCT 417 (458)
Q Consensus 340 ~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~ 417 (458)
+.|++||+.++..+..+.. .++|..+.|+.+|-+|++++ +|+.|++||++..+...++.-.. ..|.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a--dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA--DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe--cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCe
Confidence 9999999999998888865 57899999999999999955 88999999999988877776433 36999999999999
Q ss_pred EEEEeCCCcEEEEe
Q 012679 418 VASAAADETLRFWN 431 (458)
Q Consensus 418 l~s~s~Dg~i~iW~ 431 (458)
|+.++.|=+|++++
T Consensus 447 L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 447 LGIAGSDLQVYICK 460 (506)
T ss_pred EEeecceeEEEEEe
Confidence 99997775555554
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.3e-24 Score=207.17 Aligned_cols=246 Identities=24% Similarity=0.410 Sum_probs=213.3
Q ss_pred cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--C
Q 012679 159 LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--N 236 (458)
Q Consensus 159 ~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~ 236 (458)
....+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+ |..+|-++.|+ .
T Consensus 12 ~~t~Lr~~~~~--------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~-hespIeSl~f~~~E 82 (825)
T KOG0267|consen 12 RATKLRVWDTR--------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTG-HESPIESLTFDTSE 82 (825)
T ss_pred eeeccccccch--------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeec-cCCcceeeecCcch
Confidence 34455667643 2345788888988877889999999999999999888777777777 99999999996 5
Q ss_pred CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc
Q 012679 237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS 316 (458)
Q Consensus 237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 316 (458)
.+|++|+.+|+|++||++... .++++.+|...++++.|+|-+.++|+|+.|+.+++||++...+ .+.+.+|..
T Consensus 83 ~LlaagsasgtiK~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc------~~~~~s~~~ 155 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC------SHTYKSHTR 155 (825)
T ss_pred hhhcccccCCceeeeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc------eeeecCCcc
Confidence 789999999999999999665 4789999999999999999999999999999999999997777 788899999
Q ss_pred ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee
Q 012679 317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK 395 (458)
Q Consensus 317 ~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~ 395 (458)
.|..+.|+|+| .++++++ .|..+++||...|+....+. +..++.++.|+|..-.+.. |..|+++++||+++.+.
T Consensus 156 vv~~l~lsP~G-r~v~~g~--ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~--Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 156 VVDVLRLSPDG-RWVASGG--EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP--GSSDRTVRFWDLETFEV 230 (825)
T ss_pred eeEEEeecCCC-ceeeccC--CcceeeeecccccccccccccccccccccccCchhhhhcc--CCCCceeeeeccceeEE
Confidence 99999999964 4566665 89999999999999999998 5678999999988776666 77999999999999999
Q ss_pred eEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679 396 MAELSGHTSRVLFMAQSPDGCTVASAAADE 425 (458)
Q Consensus 396 ~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 425 (458)
+.........|.+++|+|+|..+++|..+.
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCchhh
Confidence 999888889999999999999888776553
No 134
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.7e-22 Score=186.56 Aligned_cols=275 Identities=15% Similarity=0.214 Sum_probs=211.4
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE--ecCCeEEEEeCCCc--e--eeEEecCCC
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG--LNNCQVQLWDSTAN--R--QLRTLRGGH 225 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g--~~dg~v~iwd~~~~--~--~~~~~~~~~ 225 (458)
.++.+++.+..++|||+..-+....+.-....-.+.++.|..... |+++ +.|..+++|.-... + .+....+ .
T Consensus 3 eNl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-d 80 (673)
T KOG4378|consen 3 ENLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-D 80 (673)
T ss_pred cceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeecccc-c
Confidence 457888899999999987654322221111122389999987664 4444 45668889963322 1 1222222 2
Q ss_pred cccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCC
Q 012679 226 RSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303 (458)
Q Consensus 226 ~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~ 303 (458)
.-.|++. ...++++|+..+.|+|||++ .+.+.+.+++|...|+++.++..+.|||+++..|.|.|..+.++..
T Consensus 81 --~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-- 155 (673)
T KOG4378|consen 81 --NAFCVACASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-- 155 (673)
T ss_pred --hHHHHhhhhcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--
Confidence 2233333 24789999999999999999 4556788999999999999999999999999999999999888765
Q ss_pred cceeeeeeccc-ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--CCCCeEEEEEcCCCCeEEEEecC
Q 012679 304 VTQWLHRLEEH-TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--TGSQVCALLWNKNERELLSSHGF 380 (458)
Q Consensus 304 ~~~~~~~~~~h-~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~ 380 (458)
...+... ...|+-+.++|....+|.+++ .+|.|.+||+....++..+. +..+...++|+|....|+++.|
T Consensus 156 ----tt~f~~~sgqsvRll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG- 228 (673)
T KOG4378|consen 156 ----TTTFTIDSGQSVRLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG- 228 (673)
T ss_pred ----ccceecCCCCeEEEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-
Confidence 3444433 345668999999999999987 99999999999888877663 4667889999999999988877
Q ss_pred CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 381 ~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
.|..|.+||..+......+. ...+...++|+++|.+|+.|...|.|..||++..+...+.
T Consensus 229 ~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 229 YDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred ccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence 68999999999877776664 4567889999999999999999999999999987665543
No 135
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=2.2e-22 Score=180.23 Aligned_cols=193 Identities=23% Similarity=0.433 Sum_probs=161.2
Q ss_pred CCeEEEEeCCCcEEEEEccCC---------------CeeEEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCC
Q 012679 236 NHILTTGGMDGLIINNDVRVR---------------DHIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMA 299 (458)
Q Consensus 236 ~~~l~sg~~dg~i~vwd~~~~---------------~~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~ 299 (458)
..+.++-+..|.|.||++... ...+.++.+|...-.+|+|||- ...|++|..-+.|++|...++
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 456677788999999998532 2346778899999999999992 334788888889999998886
Q ss_pred CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC---CeeEEEeCCCCeEEEEEcCCCCeEEE
Q 012679 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG---ACLNSVDTGSQVCALLWNKNERELLS 376 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~ 376 (458)
.-... ...+.+|+..|..|+|+|....+|++|+ .||+|+|||++.+ .++.+-.+++.|+.+.|+....+|++
T Consensus 245 ~W~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 245 SWKVD---QRPFTGHTKSVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLAS 319 (440)
T ss_pred ceeec---CccccccccchhhhccCCccCceEEeee--cCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeee
Confidence 54222 2346679999999999999999999998 9999999999998 56666677889999999999996665
Q ss_pred EecCCCCcEEEEeCCC---ceeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEecCCC
Q 012679 377 SHGFTQNQLTLWKYPS---MVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~---~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
|.++|++.|||+++ ++++++++.|..+|++|.|+| +...|+++|.|.+|.+||+.-.
T Consensus 320 --G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 320 --GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred --cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 88999999999975 578999999999999999999 4567888899999999999643
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.4e-20 Score=175.92 Aligned_cols=252 Identities=12% Similarity=0.132 Sum_probs=185.4
Q ss_pred ceeeccCC-C-eE-EEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEE
Q 012679 145 NLLDWGSS-N-VL-AIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 145 ~~~~~~~~-~-~l-a~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~ 220 (458)
..+.|+++ . ++ +++.++.|++||..+++. +..+..+. .+..++|+|+++.++++ ..++.|++||+.+.+.+..
T Consensus 34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 45677763 3 43 345678999999998876 33444433 35788999999987665 5689999999999888777
Q ss_pred ecCCCcccEEEEEe--CCCeEEEEeCCC-cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE-ECCCcEEEEeC
Q 012679 221 LRGGHRSRVGSLAW--NNHILTTGGMDG-LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG-GNDNLLHIWDR 296 (458)
Q Consensus 221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg-~~dg~i~iwd~ 296 (458)
+.. ...+.+++| ++.++++++.++ .+.+||.++.... .... ....+.++.|+|++++|+++ ..++.|++||+
T Consensus 111 ~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~-~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 111 IPV--GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV-DNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDV 186 (300)
T ss_pred eeC--CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE-EEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEc
Confidence 763 334567787 478888888765 4677898765542 2222 22345779999999988654 46999999999
Q ss_pred CCCCCCCcceeeeeeccc-------ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcC
Q 012679 297 SMASSNSVTQWLHRLEEH-------TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK 369 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~ 369 (458)
.+.+. +..+..+ ......++|+|++..++++.+ .++.|.+||..+++.+..+..+..+.++.|+|
T Consensus 187 ~~~~~------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 258 (300)
T TIGR03866 187 ATRKV------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTP 258 (300)
T ss_pred Cccee------eeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEeCCCcceEEECC
Confidence 87754 2222211 112346889999888766654 56789999999999887777777899999999
Q ss_pred CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp 413 (458)
+++.|+++. ..++.|.+||+.+++.+.++... ...+.++++|
T Consensus 259 ~g~~l~~~~-~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 259 DEKYLLTTN-GVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCEEEEEc-CCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999998753 36899999999999999998754 5568888875
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1e-22 Score=188.25 Aligned_cols=249 Identities=19% Similarity=0.241 Sum_probs=205.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---eeEEecCC-CcccEEEEEe--CCCeEEEEeCCCcEEEEEcc
Q 012679 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---QLRTLRGG-HRSRVGSLAW--NNHILTTGGMDGLIINNDVR 254 (458)
Q Consensus 181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~~~~~~~~-~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 254 (458)
.|..-|.++.+|...+++.+|+. |.|+|||+.... .+..+..- ....|.++.. ++..|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58888999999999999999875 579999986542 22333221 3345555555 78999999999999999998
Q ss_pred CCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679 255 VRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333 (458)
Q Consensus 255 ~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s 333 (458)
.....+ ..+.........++.+||.+..++++.||.|.|||+.+... +..|.+|...+.||..+++|..|. +
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~------VrqfqGhtDGascIdis~dGtklW-T 568 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL------VRQFQGHTDGASCIDISKDGTKLW-T 568 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee------eecccCCCCCceeEEecCCCceee-c
Confidence 765422 23333344567899999999999999999999999999877 899999999999999999876665 5
Q ss_pred eCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679 334 GGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 334 ~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp 413 (458)
|| -|++||.||++++..+...+..++|.++-++|.+..+++ |..++.+.|......++ ..+.-|.+-|.++.|.+
T Consensus 569 GG--lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlav--GMens~vevlh~skp~k-yqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 569 GG--LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAV--GMENSNVEVLHTSKPEK-YQLHLHESCVLSLKFAY 643 (705)
T ss_pred CC--CccceeehhhhhhhhhhhhhhhhhheecccCCCccceee--ecccCcEEEEecCCccc-eeecccccEEEEEEecc
Confidence 55 999999999999999999999999999999999999999 77889998888755444 34566899999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 414 DGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 414 dg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
-|+++++.+.|..+..|..--+..+++..
T Consensus 644 cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred cCceeeecCchhhhhhccCccccceeecc
Confidence 99999999999999999998887776644
No 138
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.1e-21 Score=172.04 Aligned_cols=227 Identities=19% Similarity=0.322 Sum_probs=183.5
Q ss_pred EEEEecCCeEEEEeCCCc------------eeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcc
Q 012679 198 IAIGLNNCQVQLWDSTAN------------RQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRG 265 (458)
Q Consensus 198 la~g~~dg~v~iwd~~~~------------~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 265 (458)
|++|+....|.-+++.-. ..+..+.. |.+.+++++.++.++++|+.|-+|+|||++.... ...+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~a-H~~sitavAVs~~~~aSGssDetI~IYDm~k~~q-lg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSA-HAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ-LGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccc-cccceeEEEecceeEeccCCCCcEEEEeccchhh-hcceec
Confidence 566666655555544211 12334445 9999999999999999999999999999997765 577788
Q ss_pred cccceEeEEEcCCCC--EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEE
Q 012679 266 HNQEVCGLKWSASGQ--QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK 343 (458)
Q Consensus 266 h~~~v~~l~~spd~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~ 343 (458)
|.+.|+++.|.++-. .|++|+.||.|.+|+...-.. +..+++|.+.|+.++.+|.+..-|.+| .|+.++
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~------~~slK~H~~~Vt~lsiHPS~KLALsVg---~D~~lr 152 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL------LKSLKAHKGQVTDLSIHPSGKLALSVG---GDQVLR 152 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE------eeeecccccccceeEecCCCceEEEEc---CCceee
Confidence 999999999998765 899999999999999877655 889999999999999999655555554 799999
Q ss_pred EEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC
Q 012679 344 FWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA 423 (458)
Q Consensus 344 lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 423 (458)
+||+-+|+.-.........+.+.|+|.|.+++.. ..+.|-||.+.+.....++... .++.++.|. ++..|++|+.
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~---~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d 227 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS---GRNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGD 227 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEE---eccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecC
Confidence 9999999988888777777889999999988875 3678999999887776666533 567777776 5668899999
Q ss_pred CCcEEEEecCCCCcccc
Q 012679 424 DETLRFWNVFGAPQVIS 440 (458)
Q Consensus 424 Dg~i~iW~~~~~~~~~~ 440 (458)
|+.|++||.........
T Consensus 228 ~~~i~~~D~ds~~~~~~ 244 (362)
T KOG0294|consen 228 NEWISLKDTDSDTPLTE 244 (362)
T ss_pred CceEEEeccCCCcccee
Confidence 99999999987544433
No 139
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.2e-23 Score=209.14 Aligned_cols=249 Identities=24% Similarity=0.481 Sum_probs=198.6
Q ss_pred CCCCccccceeeccC--CC----eEEEEcCCEEEEEECCC----CCeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCC
Q 012679 137 DLVDDYYLNLLDWGS--SN----VLAIALGSTVYLWDASD----GTTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNC 205 (458)
Q Consensus 137 ~~~~d~~~~~~~~~~--~~----~la~~~d~~v~iwd~~~----~~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg 205 (458)
.+..+..++.++|++ .. |+.+..||.|.+||... ++...+.+...|.+.|..+.|++. ++.||+|+.||
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence 345667788999976 22 44555689999999764 344456778899999999999995 55999999999
Q ss_pred eEEEEeCCCceeeEEec-CCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccc--cceEeEEEcCCC
Q 012679 206 QVQLWDSTANRQLRTLR-GGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHN--QEVCGLKWSASG 279 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~--~~v~~l~~spd~ 279 (458)
.|.|||+...+.-.... ......|.+++|| .++|++++.+|.+.|||++..+.+ ..+..|. ..+..++|+|+.
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi-i~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI-IKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc-cccccCCCccceeeeeeCCCC
Confidence 99999998866544442 2256789999997 489999999999999999987653 3333333 457899999975
Q ss_pred -CEEEEEECCC---cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE
Q 012679 280 -QQLASGGNDN---LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS 355 (458)
Q Consensus 280 -~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~ 355 (458)
..|+++++|. .|.+||++..... ++.+++|...|.++.|++.+..++++++ .|+.|.+||.++++.+..
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP-----~k~~~~H~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSP-----LKILEGHQRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCc-----hhhhcccccceeeeccCCCCchhhhccc--CCCCeeEecCCCceEeee
Confidence 4566776654 6999999887653 7778899999999999998888888887 999999999999999999
Q ss_pred EeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce
Q 012679 356 VDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV 394 (458)
Q Consensus 356 ~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~ 394 (458)
+... .-+..+.|+|....++++ .+-+|.|.||.+....
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~~A~-asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSVMAA-ASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCCcceeeeeecCCCcchhhh-heeccceeeeeeecCC
Confidence 9774 458899999999866665 4479999999986543
No 140
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.6e-22 Score=182.41 Aligned_cols=234 Identities=17% Similarity=0.318 Sum_probs=185.2
Q ss_pred CeEEEEcCCEEEEEECCCC-CeeeEEE------------------ecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeC
Q 012679 153 NVLAIALGSTVYLWDASDG-TTSELVT------------------VDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDS 212 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~-~~~~~~~------------------~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~ 212 (458)
.++.|..+..|.|||+.-- .+.+... ..+|++.|.+++|+.. .+.||+|+.|.+|++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 4555567999999997621 1112222 2368899999999874 568999999999999999
Q ss_pred CCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC-CCEEEEEECC
Q 012679 213 TANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS-GQQLASGGND 288 (458)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~d 288 (458)
.++++...+.. |...|.++.|+ +.+|++|+.|++|.+.|.+.....-... ...+.|-.++|.|. ...+++++.|
T Consensus 274 ~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 274 DTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred CCCCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecCC
Confidence 99999999996 99999999995 6899999999999999999644322222 24678999999995 5567888899
Q ss_pred CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEE
Q 012679 289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCAL 365 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~ 365 (458)
|+|+-+|+|.... ++.++..|.+.|.+|++++..+.++++++ .|+.+++|++..........+ -+...++
T Consensus 352 G~v~~~D~R~~~~-----~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 352 GTVYYFDIRNPGK-----PVWTLKAHDDEISGLSVNIQTPGLLSTAS--TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred ceEEeeecCCCCC-----ceeEEEeccCCcceEEecCCCCcceeecc--ccceEEEEeecCCCCcccccccccccceeec
Confidence 9999999998753 38899999999999999999999999987 999999999876544322221 1337788
Q ss_pred EEcCCCCeEEEEecCCCCcEEEEeCCCceee
Q 012679 366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKM 396 (458)
Q Consensus 366 ~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~ 396 (458)
++.|+-..+++.+| ..+.++|||+.+...+
T Consensus 425 ~~~~~~a~~la~GG-~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGG-EKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccCCCcceEEEecC-ccceEEEeecccChhH
Confidence 88999888888744 6779999998776544
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.4e-21 Score=181.43 Aligned_cols=245 Identities=19% Similarity=0.337 Sum_probs=202.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee-eEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCee
Q 012679 182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ-LRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHI 259 (458)
Q Consensus 182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~ 259 (458)
....|.+++|+.+.+.||++-.+|.|.||++..+-. ...+.++....|-+|+|. +..|++.+.+|.|.-||+.+...
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~- 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ- 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce-
Confidence 356799999999999999999999999999987643 445666567889999995 89999999999999999998775
Q ss_pred EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679 260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339 (458)
Q Consensus 260 ~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d 339 (458)
...+....+.|.+++.+|.+..++.|+.||.+..++...+.. +....+....+.|.+++|+|++..+ ++| +.|
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I----~~~r~l~rq~sRvLslsw~~~~~~i-~~G--s~D 175 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI----TYKRSLMRQKSRVLSLSWNPTGTKI-AGG--SID 175 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE----EEEeecccccceEEEEEecCCccEE-Eec--ccC
Confidence 566677789999999999999999999999777777665543 2234455567899999999975444 444 499
Q ss_pred CeEEEEECCCCCeeEEEeC-----C----CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEE
Q 012679 340 RCIKFWNTHTGACLNSVDT-----G----SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMA 410 (458)
Q Consensus 340 ~~i~lwd~~~~~~~~~~~~-----~----~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~ 410 (458)
|.|++||..++..+..+.. . .-|+++.+-.++ .|++ |.+-|.|.+||...+..+..+..|...|.+|+
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~s--gDS~G~V~FWd~~~gTLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIAS--GDSAGTVTFWDSIFGTLIQSHSCHDADVLALA 252 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEE--ecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence 9999999999987773321 1 126777777554 4444 78899999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679 411 QSPDGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 411 ~spdg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
..+++.+++++|.|+.|.-+...+...
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCcc
Confidence 999999999999999999998876644
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=175.75 Aligned_cols=218 Identities=24% Similarity=0.462 Sum_probs=173.6
Q ss_pred EEEcCCEEEEEECCC--------------CCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeE-
Q 012679 156 AIALGSTVYLWDASD--------------GTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLR- 219 (458)
Q Consensus 156 a~~~d~~v~iwd~~~--------------~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~- 219 (458)
+-+..|.|+||++.. .+..+++++.+|.+.=+.++||| ....|++|..-+.|++|...++.-..
T Consensus 170 swse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd 249 (440)
T KOG0302|consen 170 SWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD 249 (440)
T ss_pred eecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec
Confidence 334579999999752 23456889999999999999999 22347888888899999988875332
Q ss_pred --EecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 220 --TLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 220 --~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
.+.+ |...|-.|+|+ ...|++|+.||.|+|||++.+.+ .....+.|.+.|+-|.|+.+..+||+|+.||+++|
T Consensus 250 ~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 250 QRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSI 328 (440)
T ss_pred Cccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEE
Confidence 3444 99999999995 58999999999999999998732 22334789999999999999889999999999999
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-------------------eeE
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-------------------CLN 354 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-------------------~~~ 354 (458)
||++..+.. +++..++-|..+|++|.|+|.....++++| .|..|.+||+.... ++.
T Consensus 329 wDLR~~~~~---~pVA~fk~Hk~pItsieW~p~e~s~iaasg--~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF 403 (440)
T KOG0302|consen 329 WDLRQFKSG---QPVATFKYHKAPITSIEWHPHEDSVIAASG--EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF 403 (440)
T ss_pred EEhhhccCC---CcceeEEeccCCeeEEEeccccCceEEecc--CCCcEEEEEeeccCChhhhccccccchhcCCceeEE
Confidence 999987764 558899999999999999999888888877 99999999986422 111
Q ss_pred EEeCCCCeEEEEEcCCCCeEEEEec
Q 012679 355 SVDTGSQVCALLWNKNERELLSSHG 379 (458)
Q Consensus 355 ~~~~~~~v~~~~~s~~~~~l~~~~g 379 (458)
.......+..+.|++.-.-++++++
T Consensus 404 VHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 404 VHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred EecchhHhhhheeccCCCCeEEEec
Confidence 1123345777888888776666543
No 143
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.1e-22 Score=182.00 Aligned_cols=266 Identities=17% Similarity=0.228 Sum_probs=205.6
Q ss_pred CeEEEEc-CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679 153 NVLAIAL-GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231 (458)
Q Consensus 153 ~~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 231 (458)
.++++.. ...|.+|.+....... ...--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.. |-..|+|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITc 128 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA-HYQSITC 128 (476)
T ss_pred heeeecccCccccccccCchhhhh--hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh-hccceeE
Confidence 3444443 3478899887544322 1122357899999999999999999999999999999999999976 9999999
Q ss_pred EEe--CCCeEEEEeCCCcEEEEEccC--------CCeeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCC
Q 012679 232 LAW--NNHILTTGGMDGLIINNDVRV--------RDHIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMA 299 (458)
Q Consensus 232 l~~--~~~~l~sg~~dg~i~vwd~~~--------~~~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~ 299 (458)
+.| |+.+|++|+.||.|.+|++.. ...+...+..|.-+|+.+...+. ..+|+++|.|.++++||+..+
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 999 689999999999999998642 12346778899999999998764 468999999999999999988
Q ss_pred CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC----------------eeEEEe-C--CC
Q 012679 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA----------------CLNSVD-T--GS 360 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~----------------~~~~~~-~--~~ 360 (458)
.. +.++ .....+.+++.+|- ...+++|+ .+|+|.+.++.... .+..+. + .+
T Consensus 209 ~L------Llti-~fp~si~av~lDpa-e~~~yiGt--~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 209 VL------LLTI-TFPSSIKAVALDPA-ERVVYIGT--EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred ee------eEEE-ecCCcceeEEEccc-ccEEEecC--CcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 65 4544 34678999999995 55666655 99999998876432 112222 2 24
Q ss_pred CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEE-EeCCCcEEEEecC
Q 012679 361 QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVAS-AAADETLRFWNVF 433 (458)
Q Consensus 361 ~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s-~s~Dg~i~iW~~~ 433 (458)
+|++++.+-||..|++ |..||.++|||..+.+.+.++....++|+.+.+.|-.+..+. -...-.+-+|++.
T Consensus 279 ~ITcLais~DgtlLlS--Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLS--GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred ceeEEEEecCccEEEe--eCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 7999999999999999 889999999999999999988767789999999664333332 2233345555543
No 144
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.6e-22 Score=175.62 Aligned_cols=275 Identities=17% Similarity=0.254 Sum_probs=201.3
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCceeeEEecC-CCc-c
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANRQLRTLRG-GHR-S 227 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~~~~~~~~-~~~-~ 227 (458)
+.++++...|.|++||..+++. +..++++...+..+.|.. .+..+.+|+.||+|++||+++......+.- ++. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~--l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL--LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh--hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 4567777889999999999887 777888888899999987 567889999999999999988766554442 243 5
Q ss_pred cEEEEEeC--CCeEEEEeC----CCcEEEEEccCCCeeEEE-EcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCC
Q 012679 228 RVGSLAWN--NHILTTGGM----DGLIINNDVRVRDHIVET-YRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMA 299 (458)
Q Consensus 228 ~v~~l~~~--~~~l~sg~~----dg~i~vwd~~~~~~~~~~-~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~ 299 (458)
+..|++-+ ++++++|.. +-.|.+||+|..+.++.. ...|...|+++.|+| +.++|++|+.||.|.|||+...
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 67777774 677777753 568999999988874444 458999999999999 5778999999999999998876
Q ss_pred CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-------------CeEEEE
Q 012679 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-------------QVCALL 366 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-------------~v~~~~ 366 (458)
... ..+...-.|...|..+.|...+-.-+.+-+ ...+..+|+++.+.+...+.... .+...
T Consensus 199 ~Ee---DaL~~viN~~sSI~~igw~~~~ykrI~clT--H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~- 272 (376)
T KOG1188|consen 199 NEE---DALLHVINHGSSIHLIGWLSKKYKRIMCLT--HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE- 272 (376)
T ss_pred cch---hhHHHhhcccceeeeeeeecCCcceEEEEE--ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-
Confidence 432 224444567888999999987633344433 78999999999988665543221 11111
Q ss_pred EcCCCCeEEEEecCCCCcEEEEeCC------CceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 367 WNKNERELLSSHGFTQNQLTLWKYP------SMVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 367 ~s~~~~~l~~~~g~~d~~i~iwd~~------~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
.+|.+.-+....|..-|...++-+. .++.+..+.+ |..-|.++.|...+..+.|||.||.|.+|....
T Consensus 273 ~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 273 HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 2343333333334445555554432 2445666766 667789999998999999999999999999643
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-20 Score=180.01 Aligned_cols=280 Identities=20% Similarity=0.317 Sum_probs=215.0
Q ss_pred cceeeccC-C-CeEEEEcCCEEEEEECCCCCeeeEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 144 LNLLDWGS-S-NVLAIALGSTVYLWDASDGTTSELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 144 ~~~~~~~~-~-~~la~~~d~~v~iwd~~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
+.+++++. . .++++-.+|.|.+|++..+-.. ...+. +....|.+++|++ |..|.+.+.+|.|.-||+.+++.+..
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~-~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL-EPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCcee-eEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEE
Confidence 56677765 3 4555557899999999885443 23333 4467899999995 55677888999999999999999999
Q ss_pred ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
+.. ..+.|++++.+ +..++.|+.||.+..++...+.-.. ..+.-..+.|.+++|+|++..|++|+.||.|++||..
T Consensus 106 ~d~-~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 106 IDS-NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred ecC-CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 987 88999999996 5899999999977777776544222 2334456899999999999999999999999999998
Q ss_pred CCCCCCcce-eeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeE
Q 012679 298 MASSNSVTQ-WLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNEREL 374 (458)
Q Consensus 298 ~~~~~~~~~-~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l 374 (458)
.+....... .+..+.. ...-|+++.+-. ...+++|. .-|+|++||...+..++.+.. ...|.+++-.+++..+
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgD--S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGD--SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEee--cCcEEEec--CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence 877621000 0111222 334577787774 46677765 889999999999999988864 6789999999999999
Q ss_pred EEEecCCCCcEEEEeCCCcee----eEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 375 LSSHGFTQNQLTLWKYPSMVK----MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~~~~----~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
+++ +.|+.|..|...+... ......|...|.+++..++ .|++|+.|.+|.+-....
T Consensus 261 fsa--Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 261 FSA--GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEc--cCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 995 3788888887765433 3334578889999999877 899999999998877654
No 146
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=185.66 Aligned_cols=273 Identities=21% Similarity=0.348 Sum_probs=211.2
Q ss_pred ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
+++.+.+.| +.-+..+.+..+++||...|.. +.++++|.+.|+|++|+.||+.+|+|+.|..|.+|...-. ..+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~l--lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTL--LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GIL 88 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCccc--ccccccccceEEEEEEccCCceeccCCCceeEEEeccccc---cee
Confidence 677778877 4567777889999999999987 8899999999999999999999999999999999974432 333
Q ss_pred cCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 012679 222 RGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA 299 (458)
Q Consensus 222 ~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~ 299 (458)
+-.|...|.|+.||+ +.|++++-. ..-+|...... +... .....|++++|..||++|+.|-.+|+|.|-+-...
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~--V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS--VSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh--HHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 334999999999985 677777653 45677665332 1111 12457899999999999999999999999864333
Q ss_pred CCCCcceeeeeecccccceeEEEecCCCC----cEEEEeCCCCCCeEEEEECCCCCeeE-EEeCCCCeEEEEEcCCCCeE
Q 012679 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQS----NLLATGGGGGDRCIKFWNTHTGACLN-SVDTGSQVCALLWNKNEREL 374 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~----~ll~s~~g~~d~~i~lwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l 374 (458)
.. ..+..-.+...+|.+++|+|... .++++.. ...++.++.+. |+.+. .-..+-...++.+.++|.++
T Consensus 165 ek----~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 165 EK----VKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYI 237 (1081)
T ss_pred cc----eEEeCCCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEE
Confidence 22 11344456788999999999643 3455544 56677777664 44333 33446678899999999999
Q ss_pred EEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
+. |+.|+.+.+|. +.|-.+.++......|+.++..|++++++.|+.||+|..|++-.
T Consensus 238 Li--GGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 238 LL--GGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EE--ccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 99 77899999996 45667777766788999999999999999999999999998753
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=7.4e-21 Score=174.40 Aligned_cols=258 Identities=19% Similarity=0.265 Sum_probs=202.2
Q ss_pred EEEecCCCCCEEEEEEcCCC--CEEEEEecCCeEEEEeCCCce----eeEEecCCCcccEEEEEeC---CCeEEEEeCCC
Q 012679 176 LVTVDDENGPVTSVNWAPDG--RHIAIGLNNCQVQLWDSTANR----QLRTLRGGHRSRVGSLAWN---NHILTTGGMDG 246 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g--~~la~g~~dg~v~iwd~~~~~----~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg 246 (458)
.....-+.+.|++++|+|.. +.+|+|...|.|-+||+.+.+ .+..+.. |..+|.+|.|+ ...+++.+.||
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheeeeccCc
Confidence 33445578899999999943 689999999999999995332 2334444 99999999994 57899999999
Q ss_pred cEEEEEccCCCe-eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679 247 LIINNDVRVRDH-IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325 (458)
Q Consensus 247 ~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 325 (458)
+|++-|++.... .+..+......++++.|+.+...++.|.+=|...+||.++.... ...+.-|...|..++++|
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~-----~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE-----YENLRLHKKKITSVALNP 332 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc-----chhhhhhhcccceeecCC
Confidence 999999986542 12223234556788999998888888888889999999988763 344556888999999999
Q ss_pred CCCcEEEEeCCCCCCeEEEEECCCCC-----eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC----Cceee
Q 012679 326 FQSNLLATGGGGGDRCIKFWNTHTGA-----CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP----SMVKM 396 (458)
Q Consensus 326 ~~~~ll~s~~g~~d~~i~lwd~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~----~~~~~ 396 (458)
...+++++++ .|++.+|||++.-. .+.++.+...|.+..|+|.+..|++++ .|+.|+|||.. ...+.
T Consensus 333 ~~p~~laT~s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~--~D~~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 333 VCPWFLATAS--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC--QDNEIRVFDSSCISAKDEPL 408 (498)
T ss_pred CCchheeecc--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec--cCCceEEeecccccccCCcc
Confidence 9999999998 99999999998632 256677888999999999999988854 89999999983 34444
Q ss_pred EEEeCCCC------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679 397 AELSGHTS------RVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444 (458)
Q Consensus 397 ~~~~~h~~------~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~ 444 (458)
.++. |.. .....+|.|+..++++|-.-..|-|+|-..++.+.+...|
T Consensus 409 ~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 409 GTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred ceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 4443 321 2446789999999999999889999998888766654433
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=6.2e-20 Score=176.16 Aligned_cols=282 Identities=22% Similarity=0.411 Sum_probs=209.5
Q ss_pred ceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC---EEEEEecCCeEEEEeCCCce--eeE
Q 012679 145 NLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR---HIAIGLNNCQVQLWDSTANR--QLR 219 (458)
Q Consensus 145 ~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~---~la~g~~dg~v~iwd~~~~~--~~~ 219 (458)
+..+|.+..+++-|.+..|.+||..+... ...+.+|..+|+|+.|-|+.+ ++++|+.||.|.+|.++... .+.
T Consensus 18 ~v~sw~~~~~vafGa~~~Iav~dp~k~~i--~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~ 95 (764)
T KOG1063|consen 18 KVSSWGPGGLVAFGAGPAIAVADPEKILI--VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY 95 (764)
T ss_pred ccccccccceEEecCCceEEEeCccccee--EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE
Confidence 34678889999999999999999876533 788999999999999999877 89999999999999998443 334
Q ss_pred EecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCC------------------------------------------
Q 012679 220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD------------------------------------------ 257 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~------------------------------------------ 257 (458)
++.+ |...+.|+.=......+.+.|+.+.+||.+..+
T Consensus 96 ~~~g-~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~ 174 (764)
T KOG1063|consen 96 TIQG-HCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLY 174 (764)
T ss_pred eecC-cceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEe
Confidence 4444 555555544333444444688899999884322
Q ss_pred -------eeEEEEcccccceEeEEEcCCC---CEEEEEECCCcEEEEeCCCCCCCC---------------cceee----
Q 012679 258 -------HIVETYRGHNQEVCGLKWSASG---QQLASGGNDNLLHIWDRSMASSNS---------------VTQWL---- 308 (458)
Q Consensus 258 -------~~~~~~~~h~~~v~~l~~spd~---~~l~sg~~dg~i~iwd~~~~~~~~---------------~~~~~---- 308 (458)
..+..+.||...|.+++|...+ -+||++|.|..|+||.+.-..... .....
T Consensus 175 s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~ 254 (764)
T KOG1063|consen 175 SSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ 254 (764)
T ss_pred ccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence 1134567899999999998744 488999999999999875443110 00001
Q ss_pred ------eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC--CeeEEEeC------CCCeEEEEEcCCCCeE
Q 012679 309 ------HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG--ACLNSVDT------GSQVCALLWNKNEREL 374 (458)
Q Consensus 309 ------~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~--~~~~~~~~------~~~v~~~~~s~~~~~l 374 (458)
..+.+|...|.++.|+|.+..||.+ + .|.++.+|...+. --+..... ........|+|++..+
T Consensus 255 ~~is~eall~GHeDWV~sv~W~p~~~~LLSA-S--aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 255 YRISFEALLMGHEDWVYSVWWHPEGLDLLSA-S--ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred EEEehhhhhcCcccceEEEEEccchhhheec-c--cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 1234899999999999987566654 3 8999999976543 33333322 1237788999999888
Q ss_pred EEEecCCCCcEEEEeCCC---ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 375 LSSHGFTQNQLTLWKYPS---MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~---~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
++- | ..|..++|.... ..+...+.||.+.|+.++|+|.|.+|+++|.|.+-|++--..
T Consensus 332 i~~-g-~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg 392 (764)
T KOG1063|consen 332 IAH-G-RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG 392 (764)
T ss_pred EEe-c-ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc
Confidence 773 3 688999998332 234455679999999999999999999999999999987763
No 149
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=5.9e-21 Score=180.23 Aligned_cols=241 Identities=19% Similarity=0.282 Sum_probs=194.9
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC----CeEEEEeCCCcEEEE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN----HILTTGGMDGLIINN 251 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~sg~~dg~i~vw 251 (458)
...+.+|.+.|.+|+..|.|.+||+|+.||+|+||.+.++.+++++. ..+.|.|++|++ .+|+++-... +.+-
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 45577999999999999999999999999999999999999999998 677999999963 3444443333 3333
Q ss_pred EccCC------------------------------------CeeEEEEcccccceEeEEEcCCCCEEEEEECC---CcEE
Q 012679 252 DVRVR------------------------------------DHIVETYRGHNQEVCGLKWSASGQQLASGGND---NLLH 292 (458)
Q Consensus 252 d~~~~------------------------------------~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d---g~i~ 292 (458)
+..-+ +.-+.....|...|..+.|+..|.||++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 22111 01123444678899999999999999987654 4688
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-CeEEEEEcCCC
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-QVCALLWNKNE 371 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-~v~~~~~s~~~ 371 (458)
|+++..... ...|....+.|.++.|+|....++++ .-+.|++||+..+..++.+.++. -|..++.+|.|
T Consensus 550 iHQLSK~~s------Q~PF~kskG~vq~v~FHPs~p~lfVa----Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 550 IHQLSKRKS------QSPFRKSKGLVQRVKFHPSKPYLFVA----TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred EEecccccc------cCchhhcCCceeEEEecCCCceEEEE----eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 999887665 33454556789999999988888776 46789999999988888776655 48899999999
Q ss_pred CeEEEEecCCCCcEEEEeCCC-ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 372 RELLSSHGFTQNQLTLWKYPS-MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 372 ~~l~~~~g~~d~~i~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
..|++ |..|+.+..||+.- .++..++.-|...|+.++|++.-.++++|+.||++.|+.
T Consensus 620 Dnli~--gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 620 DNLIL--GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CeEEE--ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999 66899999999975 456778889999999999999999999999999999885
No 150
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=9.2e-21 Score=173.95 Aligned_cols=245 Identities=14% Similarity=0.248 Sum_probs=199.9
Q ss_pred ccccceeeccC--C-CeEEEEcCCEEEEEECCCCCeeeEEEecCCC-CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679 141 DYYLNLLDWGS--S-NVLAIALGSTVYLWDASDGTTSELVTVDDEN-GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR 216 (458)
Q Consensus 141 d~~~~~~~~~~--~-~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~-~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~ 216 (458)
++.+.+..+.+ . ++++++....+|.||+.+.++.++..+.++. ..+.....++++++||..+..|.|.|....+++
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 44555555655 2 5777777889999999999987777766654 457788899999999999999999999999999
Q ss_pred eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcc-cccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 217 QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRG-HNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 217 ~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
.+..++ -.+.|..+.| ++..|++.+.+|.|++||++.... +..+.. ..-.-++++.++++.+||+|+..|.|.|
T Consensus 337 li~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~-~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 337 LITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC-LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNI 413 (514)
T ss_pred hhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce-EEEEeecCccceeeeeecCCCceEEeccCcceEEE
Confidence 999998 7889999999 578999999999999999998754 444442 1223356777799999999999999999
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC----CCeEEEEEcC
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG----SQVCALLWNK 369 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~----~~v~~~~~s~ 369 (458)
||.++.......+++..+..-...|.+++|+|+ ..+||.++...+..+++-.+.+......+... +.+++++|+|
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d-~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD-AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP 492 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcc-hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC
Confidence 998776655556678888888899999999997 55666665557889999999988777766543 4599999999
Q ss_pred CCCeEEEEecCCCCcEEEEeCC
Q 012679 370 NERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 370 ~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
.+.+++. |...|.+.+|.+.
T Consensus 493 ~sG~lAv--GNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAV--GNEAGRVHLFKLH 512 (514)
T ss_pred CCceEEe--ecCCCceeeEeec
Confidence 9999999 8899999999864
No 151
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=6.7e-20 Score=180.47 Aligned_cols=269 Identities=19% Similarity=0.283 Sum_probs=204.1
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCcee-----eEEecCCCcccEEEEEe
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQ-----LRTLRGGHRSRVGSLAW 234 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~-----~~~~~~~~~~~v~~l~~ 234 (458)
+.++||++.... .+...+.. ...|+|++|+| +..++|.|+.+|.|.+||+..+.. +......|..+|..+.|
T Consensus 222 ~~~~vW~~~~p~-~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPN-TPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCC-CceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 489999998873 33344433 67899999999 678889999999999999987765 22233459999999999
Q ss_pred C----CCeEEEEeCCCcEEEEEccCCCeeEEEE-----c------ccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 012679 235 N----NHILTTGGMDGLIINNDVRVRDHIVETY-----R------GHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 235 ~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~------~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~ 298 (458)
. +.-+++++.||.|..|+++.-..+.... . .-...+++++|.+ +-..|+.|+.+|.|.-=+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 2 4669999999999999887543221111 1 1234688999988 567889999999988733322
Q ss_pred CCCCC--cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC-CCCeeEEEeCC-CCeEEEEEcCCCCeE
Q 012679 299 ASSNS--VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH-TGACLNSVDTG-SQVCALLWNKNEREL 374 (458)
Q Consensus 299 ~~~~~--~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~~~-~~v~~~~~s~~~~~l 374 (458)
..... ..+....+..|.++|.++.++|....++.+++ |.++++|... ...++..+... ..+++++|||....+
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpav 456 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAV 456 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceE
Confidence 22211 11224456678999999999999999999884 9999999988 66666666554 449999999999888
Q ss_pred EEEecCCCCcEEEEeCCC--ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 375 LSSHGFTQNQLTLWKYPS--MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~--~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
+++ +..+|.|.|||+.. ..++.+..-+....+.+.|+++|+.|+.|...|++.+|++...
T Consensus 457 F~~-~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 457 FAT-VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEE-EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 877 56899999999864 4556666556667788889999999999999999999999643
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.7e-21 Score=196.85 Aligned_cols=246 Identities=22% Similarity=0.404 Sum_probs=197.0
Q ss_pred CCCEEEEEEcCCCCE----EEEEecCCeEEEEeCCCc------eeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEE
Q 012679 183 NGPVTSVNWAPDGRH----IAIGLNNCQVQLWDSTAN------RQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLII 249 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~----la~g~~dg~v~iwd~~~~------~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~ 249 (458)
....+.++|.+.|.. ||.|..||.|.+||...- ..+.+... |.+.|..+.|| +++|++|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccCCCCcEE
Confidence 456899999997765 888999999999997652 23445555 99999999996 57999999999999
Q ss_pred EEEccCCCeeEEE-EcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc--ceeEEEecC
Q 012679 250 NNDVRVRDHIVET-YRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS--AVKAIAWCP 325 (458)
Q Consensus 250 vwd~~~~~~~~~~-~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p 325 (458)
|||+...+..... -......|.+++|+.. ...|++++.+|.+.|||++..+. +..+..+.+ .+..++|+|
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p------ii~ls~~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP------IIKLSDTPGRMHCSVLAWHP 216 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc------ccccccCCCccceeeeeeCC
Confidence 9999875543222 2235678999999874 55789999999999999998865 555555544 477899999
Q ss_pred CCCcEEEEeCC-CCCCeEEEEECCCC-CeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679 326 FQSNLLATGGG-GGDRCIKFWNTHTG-ACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH 402 (458)
Q Consensus 326 ~~~~ll~s~~g-~~d~~i~lwd~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h 402 (458)
+...-++++++ ...-.|.+||++.- .+++.+. |...|.++.|++.+..++.++| .|+.|.+|+.++++.+.++...
T Consensus 217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~ii~wN~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRIICWNPNTGEVLGELPAQ 295 (1049)
T ss_pred CCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCeeEecCCCceEeeecCCC
Confidence 98877766652 22346999998863 4666663 4567999999999966666656 8999999999999999999888
Q ss_pred CCcEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCC
Q 012679 403 TSRVLFMAQSPDGC-TVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 403 ~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~~~~~~ 436 (458)
...+..+.|+|... .++.++-||.|-|+.+.+..
T Consensus 296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 89999999999655 78888999999999998765
No 153
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=7.1e-20 Score=175.76 Aligned_cols=338 Identities=16% Similarity=0.255 Sum_probs=238.8
Q ss_pred HHHHhCCCCCceeeccCCCCCCCcCCCCcCCCcccCCccccccccCCCCCCCCCCCceeeeCCCCCCccccceeeccC--
Q 012679 74 LAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGS-- 151 (458)
Q Consensus 74 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~-- 151 (458)
++..+.++...|.+..-.|+.- ..+++ |+..+.-.|++-+. .-|....-|+-...+-.-.|+- .-|++
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~-----~LLSA--SaDksmiiW~pd~~-tGiWv~~vRlGe~gg~a~GF~g--~lw~~n~ 328 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGL-----DLLSA--SADKSMIIWKPDEN-TGIWVDVVRLGEVGGSAGGFWG--GLWSPNS 328 (764)
T ss_pred hhhhhcCcccceEEEEEccchh-----hheec--ccCcceEEEecCCc-cceEEEEEEeecccccccceee--EEEcCCC
Confidence 4445557777777776666541 12222 22233333443322 2233222333333333334443 34555
Q ss_pred CCeEEEEcCCEEEEEE-CCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc----eeeEEecCCCc
Q 012679 152 SNVLAIALGSTVYLWD-ASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----RQLRTLRGGHR 226 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd-~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----~~~~~~~~~~~ 226 (458)
+-+++-+..|..++|. .+...+.+...+.+|.+.|++|+|+|.|.+|++.+.|-+-+|+-.-.. ..+..-+. |.
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQi-HG 407 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQI-HG 407 (764)
T ss_pred CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccc-cc
Confidence 4488888999999998 334455666678899999999999999999999999999999864311 22333334 88
Q ss_pred ccEEEEEe-C-CCeEEEEeCCCcEEEEEccCC-------------------------------------------Ce---
Q 012679 227 SRVGSLAW-N-NHILTTGGMDGLIINNDVRVR-------------------------------------------DH--- 258 (458)
Q Consensus 227 ~~v~~l~~-~-~~~l~sg~~dg~i~vwd~~~~-------------------------------------------~~--- 258 (458)
..+.|+++ + +..+++|.....+++|+.... ..
T Consensus 408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~ 487 (764)
T KOG1063|consen 408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV 487 (764)
T ss_pred ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence 89999999 5 678888888888999875310 00
Q ss_pred -----------------------------eEEEEcccccceEeEEEcCCCCEEEEEECCC-----cEEEEeCCCCCCCCc
Q 012679 259 -----------------------------IVETYRGHNQEVCGLKWSASGQQLASGGNDN-----LLHIWDRSMASSNSV 304 (458)
Q Consensus 259 -----------------------------~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg-----~i~iwd~~~~~~~~~ 304 (458)
.+..+.||..+|.+++.+|+++++|+++... .|++|+..+-..
T Consensus 488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~--- 564 (764)
T KOG1063|consen 488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ--- 564 (764)
T ss_pred eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh---
Confidence 0233458999999999999999999998643 589999877655
Q ss_pred ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee----EEEe-CCCCeEEEEEcCCCCeEEEEec
Q 012679 305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL----NSVD-TGSQVCALLWNKNERELLSSHG 379 (458)
Q Consensus 305 ~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~g 379 (458)
.+.+..|.-.|+.|+|+|++.+|++++ .|+++.+|........ ...+ +..-|....|+|++.++++ +
T Consensus 565 ---~~~L~~HsLTVT~l~FSpdg~~LLsvs---RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT--a 636 (764)
T KOG1063|consen 565 ---VQELEGHSLTVTRLAFSPDGRYLLSVS---RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT--A 636 (764)
T ss_pred ---hheecccceEEEEEEECCCCcEEEEee---cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE--e
Confidence 667889999999999999988888776 8999999987543211 1122 2334889999999999888 4
Q ss_pred CCCCcEEEEeCCCc--eeeEE--EeCCCCcEEEEEEcC-----CCCEEEEEeCCCcEEEEecC
Q 012679 380 FTQNQLTLWKYPSM--VKMAE--LSGHTSRVLFMAQSP-----DGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 380 ~~d~~i~iwd~~~~--~~~~~--~~~h~~~V~~l~~sp-----dg~~l~s~s~Dg~i~iW~~~ 433 (458)
..|..|.||..+.. +.+.. ...+...|+.+++.| .+..++.|-..|.|.+|+..
T Consensus 637 SRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 637 SRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 48999999999877 44433 345788999999987 23367788889999999976
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=7.4e-20 Score=161.40 Aligned_cols=274 Identities=17% Similarity=0.309 Sum_probs=204.2
Q ss_pred CCeEEEEcCCEEEEEECCCCC-eeeEEEe--cCCCCCEEEEEEcCC----CCEEEEEecCCeEEEEeCCCceeeEEecCC
Q 012679 152 SNVLAIALGSTVYLWDASDGT-TSELVTV--DDENGPVTSVNWAPD----GRHIAIGLNNCQVQLWDSTANRQLRTLRGG 224 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~-~~~~~~~--~~h~~~V~~v~~s~~----g~~la~g~~dg~v~iwd~~~~~~~~~~~~~ 224 (458)
..+++...++.+.+|.....- ...+..+ +.|......++|+-+ ..+||+|+.-|.|+|.|+.+++....+.+
T Consensus 55 ~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~g- 133 (385)
T KOG1034|consen 55 PQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRG- 133 (385)
T ss_pred CceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceec-
Confidence 567888888899999876432 2222222 246788899999863 45899999999999999999999999998
Q ss_pred CcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCee--EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 012679 225 HRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHI--VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA 299 (458)
Q Consensus 225 ~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~ 299 (458)
|...|+.|.+. ++++++++.|..|++|++++..++ ..-+.+|..+|.++.|+++|.+|+++|.|..|++|++...
T Consensus 134 hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 99999999995 579999999999999999987652 2334689999999999999999999999999999999843
Q ss_pred CCCCcce---------------------ee-eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC-CCCCe----
Q 012679 300 SSNSVTQ---------------------WL-HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT-HTGAC---- 352 (458)
Q Consensus 300 ~~~~~~~---------------------~~-~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~-~~~~~---- 352 (458)
+.....+ +. .+-.-|...|-|+.|-- .++++-+ -++.|.+|.. +-++.
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSks--cenaI~~w~pgkl~e~~~~v 288 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKS--CENAIVCWKPGKLEESIHNV 288 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecc--cCceEEEEecchhhhhhhcc
Confidence 3211100 01 12345778888888854 4555544 6789999987 22222
Q ss_pred ---------eEEEeCC-CCeE--EEEEcCCCCeEEEEecCCCCcEEEEeCCCceee--EEEeCC--CCcEEEEEEcCCCC
Q 012679 353 ---------LNSVDTG-SQVC--ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM--AELSGH--TSRVLFMAQSPDGC 416 (458)
Q Consensus 353 ---------~~~~~~~-~~v~--~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~--~~~~~h--~~~V~~l~~spdg~ 416 (458)
+..++.. ..+. ..+|++.++.|++ |...|.|.+||+...++. .++..+ ...|...+||.||.
T Consensus 289 kp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~--gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 289 KPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL--GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred CCCccceeeeeEeccCccceEEEEEeecHHHHHHhh--ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 1222221 2333 3456777888888 879999999999876652 233222 35699999999999
Q ss_pred EEEEEeCCCcEEEEecC
Q 012679 417 TVASAAADETLRFWNVF 433 (458)
Q Consensus 417 ~l~s~s~Dg~i~iW~~~ 433 (458)
+|+..+.|++|.-||.-
T Consensus 367 ~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeCCCcEEEEEee
Confidence 99999999999999853
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=9e-20 Score=173.19 Aligned_cols=151 Identities=21% Similarity=0.386 Sum_probs=117.6
Q ss_pred ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe-------eEEEe-
Q 012679 286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-------LNSVD- 357 (458)
Q Consensus 286 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-------~~~~~- 357 (458)
+..|.|-||+++......... +..+ .....|+.+.|.|....-||+++ .||.|++|.+..+.. ...+.
T Consensus 600 g~gG~iai~el~~PGrLPDgv-~p~l-~Ngt~vtDl~WdPFD~~rLAVa~--ddg~i~lWr~~a~gl~e~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGV-MPGL-FNGTLVTDLHWDPFDDERLAVAT--DDGQINLWRLTANGLPENEMTPEKILTI 675 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccc-cccc-ccCceeeecccCCCChHHeeecc--cCceEEEEEeccCCCCcccCCcceeeec
Confidence 446788888887654421111 1122 23567999999999888888877 999999999876532 22332
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679 358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 358 ~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
+...|+++.|+|-...++++ ...|-+|++||+.+++....+.+|++.|..++|||||+.+++.+.||+|++|+-...++
T Consensus 676 h~eKI~slRfHPLAadvLa~-asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAV-ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred ccceEEEEEecchhhhHhhh-hhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 45679999999976555544 34789999999999999999999999999999999999999999999999999887766
Q ss_pred cccc
Q 012679 438 VISK 441 (458)
Q Consensus 438 ~~~~ 441 (458)
....
T Consensus 755 pv~E 758 (1012)
T KOG1445|consen 755 PVYE 758 (1012)
T ss_pred cccc
Confidence 5543
No 156
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.5e-20 Score=175.24 Aligned_cols=255 Identities=15% Similarity=0.211 Sum_probs=195.7
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC--------ceeeEEecCCCcccEEEEEe--CCCeEEEEeCC
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA--------NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD 245 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~--------~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d 245 (458)
-+++..|.+.|+.++|.|....|++++.||.|.+|+++. -+.+.++.+ |.++|.|++. ++..+++|+.|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccC
Confidence 346678889999999999999999999999999999832 246778887 9999999999 68999999999
Q ss_pred CcEEEEEccCCC---------eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc
Q 012679 246 GLIINNDVRVRD---------HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS 316 (458)
Q Consensus 246 g~i~vwd~~~~~---------~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 316 (458)
|+|+.|++.... .+...+.||...|..+++|+....|++++.||++++|+....... ........+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~-----~f~~~~e~g 440 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC-----TFGEPKEHG 440 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc-----ccCCccccC
Confidence 999999664221 345678899999999999999999999999999999997665431 111111122
Q ss_pred ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--------CCCeEEEEEcCCCCeEEEEecCCCCcEEEE
Q 012679 317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--------GSQVCALLWNKNERELLSSHGFTQNQLTLW 388 (458)
Q Consensus 317 ~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw 388 (458)
.-.++.+-.......++.. .-+.-.+.+...+..+..+.. ...+..+.++|.....++++ .++.|+++
T Consensus 441 ~Plsvd~~ss~~a~~~~s~--~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h--ed~~Ir~~ 516 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASF--RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH--EDRSIRFF 516 (577)
T ss_pred CcceEeeccchhHhhhhhc--ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc--cCCceecc
Confidence 3345555443322222211 223333444444544444432 13578899999998888854 89999999
Q ss_pred eCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 389 d~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
|..++..++....|...|+++++.|+|-+|++++.|+.+++|++.....+..
T Consensus 517 dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 517 DNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred cccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 9999999999999999999999999999999999999999999977665554
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.1e-18 Score=152.79 Aligned_cols=237 Identities=21% Similarity=0.359 Sum_probs=179.9
Q ss_pred eeccCCCeEEEEcCCEEEEEECC--CCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCC--------
Q 012679 147 LDWGSSNVLAIALGSTVYLWDAS--DGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTA-------- 214 (458)
Q Consensus 147 ~~~~~~~~la~~~d~~v~iwd~~--~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~-------- 214 (458)
+++.+.++++++.|++|+|||.. ++..........|.+.|..|.|.+ -|+.+|+++.|+++.||.-..
T Consensus 21 ~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~ 100 (361)
T KOG2445|consen 21 FDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGR 100 (361)
T ss_pred ecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccc
Confidence 44566899999999999999954 466666777889999999999976 699999999999999997421
Q ss_pred -ceeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCee-----E-------EEEcccccceEeEEEcC
Q 012679 215 -NRQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHI-----V-------ETYRGHNQEVCGLKWSA 277 (458)
Q Consensus 215 -~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~-----~-------~~~~~h~~~v~~l~~sp 277 (458)
.....++.. ....|+.+.|. |-.|++++.||.++||+.-....+ . .....+.....|+.|+|
T Consensus 101 ~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~ 179 (361)
T KOG2445|consen 101 RWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP 179 (361)
T ss_pred eeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecc
Confidence 112334444 77889999994 678999999999999987543221 1 11224667788999998
Q ss_pred ---CCCEEEEEECC-----CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC---cEEEEeCCCCCCeEEEEE
Q 012679 278 ---SGQQLASGGND-----NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS---NLLATGGGGGDRCIKFWN 346 (458)
Q Consensus 278 ---d~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~---~ll~s~~g~~d~~i~lwd 346 (458)
...+||.|+.+ +.++||........ ...+..+.+|..+|+.|+|.|.-. .++|+++ .|| |+||+
T Consensus 180 sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK--w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--kDg-v~I~~ 254 (361)
T KOG2445|consen 180 SRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK--WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--KDG-VRIFK 254 (361)
T ss_pred ccccCceEEEEcccCCccccceEEEEecCCcce--eeeehhcCCCCCcceeeeeccccCCceeeEEEee--cCc-EEEEE
Confidence 35678888876 58999987665421 222566779999999999999643 5788876 899 99999
Q ss_pred CCCCC--------------------eeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679 347 THTGA--------------------CLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 347 ~~~~~--------------------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
+.... .+..+ ++.++|..+.|+-.|..|.++ +.||.|++|...
T Consensus 255 v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt--GdDG~VRLWkan 318 (361)
T KOG2445|consen 255 VKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST--GDDGCVRLWKAN 318 (361)
T ss_pred EeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeec--CCCceeeehhhh
Confidence 87311 12222 346689999999999998885 389999999864
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.9e-19 Score=170.21 Aligned_cols=269 Identities=18% Similarity=0.268 Sum_probs=203.6
Q ss_pred cceee--ccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC--EEEEEecCCeEEEEeCCCc----
Q 012679 144 LNLLD--WGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR--HIAIGLNNCQVQLWDSTAN---- 215 (458)
Q Consensus 144 ~~~~~--~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~--~la~g~~dg~v~iwd~~~~---- 215 (458)
+.+++ .++.-+++|+.||+|+||.+.+|.+.....+ .+.|.||+|+|.+. .||++.... +.|.+..-|
T Consensus 403 Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~---d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e 478 (733)
T KOG0650|consen 403 VRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF---DSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLE 478 (733)
T ss_pred EEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee---cceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhh
Confidence 44444 4456788999999999999999998555555 44799999999654 555554433 444432111
Q ss_pred --------------------------------e-eeEEecCCCcccEEEEEeC--CCeEEEEeCC---CcEEEEEccCCC
Q 012679 216 --------------------------------R-QLRTLRGGHRSRVGSLAWN--NHILTTGGMD---GLIINNDVRVRD 257 (458)
Q Consensus 216 --------------------------------~-~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d---g~i~vwd~~~~~ 257 (458)
+ -++..- .|...|..+.|+ |.+|++...+ ..|.|+++....
T Consensus 479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I-~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~ 557 (733)
T KOG0650|consen 479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI-KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK 557 (733)
T ss_pred hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE-ecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc
Confidence 0 011111 388899999995 7899987654 468899987654
Q ss_pred eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679 258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~ 337 (458)
. ...+....+.|.++.|+|...+|++++. ..|+|||+..... +.++......|..++.+|.|.++++.+
T Consensus 558 s-Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel------vKkL~tg~kwiS~msihp~GDnli~gs--- 626 (733)
T KOG0650|consen 558 S-QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL------VKKLLTGSKWISSMSIHPNGDNLILGS--- 626 (733)
T ss_pred c-cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH------HHHHhcCCeeeeeeeecCCCCeEEEec---
Confidence 3 2445455678999999999999999876 6899999987655 566666677899999999999988843
Q ss_pred CCCeEEEEECCCC-CeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC---------CceeeEEEeCCCCc-
Q 012679 338 GDRCIKFWNTHTG-ACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP---------SMVKMAELSGHTSR- 405 (458)
Q Consensus 338 ~d~~i~lwd~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~---------~~~~~~~~~~h~~~- 405 (458)
.|+.+..+|+.-. ++.+++.. ...+++++|++....+++ |+.||++.||.-. -.-++..+.+|...
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas--~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~ 704 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFAS--GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN 704 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeee--ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence 8999999999765 45555554 456899999999998888 6689999998632 13467788899765
Q ss_pred ---EEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679 406 ---VLFMAQSPDGCTVASAAADETLRFW 430 (458)
Q Consensus 406 ---V~~l~~spdg~~l~s~s~Dg~i~iW 430 (458)
|....|+|...+|+++++||+|++|
T Consensus 705 ~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 DLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccceEeecccCCCceEEecCCCceEEee
Confidence 9999999999999999999999999
No 159
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=8.3e-18 Score=161.15 Aligned_cols=272 Identities=11% Similarity=0.183 Sum_probs=180.8
Q ss_pred EEEEcCCEEEEEECCC-CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCC-cee--eEEecCCCcccE
Q 012679 155 LAIALGSTVYLWDASD-GTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTA-NRQ--LRTLRGGHRSRV 229 (458)
Q Consensus 155 la~~~d~~v~iwd~~~-~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~-~~~--~~~~~~~~~~~v 229 (458)
++.+.++.|++|++.+ +++..+..+. +.+....++++|++++|++++ .++.|.+|++.. ++. +.... .....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p 82 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSP 82 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCc
Confidence 4446789999999964 5655555554 345678899999999987765 478899999863 332 22222 33345
Q ss_pred EEEEeC--CCeEEEEe-CCCcEEEEEccCCCe---eEEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCCCC
Q 012679 230 GSLAWN--NHILTTGG-MDGLIINNDVRVRDH---IVETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMASSN 302 (458)
Q Consensus 230 ~~l~~~--~~~l~sg~-~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~~~ 302 (458)
..++++ ++.|++++ .++.|.+|++..... .+..+. +.....+++++|+++++++++ .++.|.+||+......
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 678885 66777665 488999999974332 122222 234467788999999886554 5699999999763321
Q ss_pred Cc-ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC--CC--eeEEEeC-------CCCeEEEEEcCC
Q 012679 303 SV-TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT--GA--CLNSVDT-------GSQVCALLWNKN 370 (458)
Q Consensus 303 ~~-~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~--~~--~~~~~~~-------~~~v~~~~~s~~ 370 (458)
.. ........ .......++|+|++..++++.. .++.|.+|++.. ++ .+..+.. ......+.++|+
T Consensus 162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccCCCceecC-CCCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 00 00011111 1234578999999888888765 689999999973 33 2333321 112336889999
Q ss_pred CCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC---CcEEEEEEcCCCCEEEEEeC-CCcEEEEecCC
Q 012679 371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT---SRVLFMAQSPDGCTVASAAA-DETLRFWNVFG 434 (458)
Q Consensus 371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~---~~V~~l~~spdg~~l~s~s~-Dg~i~iW~~~~ 434 (458)
+++++++. ..++.|.+|++.......++.++. .....++++|||++|+++.. +++|.+|++..
T Consensus 239 g~~lyv~~-~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 239 GRHLYACD-RTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCEEEEec-CCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 99999863 357899999986543222222221 24567899999999998775 89999999864
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=1.2e-18 Score=153.61 Aligned_cols=245 Identities=20% Similarity=0.345 Sum_probs=183.2
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCc------------eeeEEecCCCcccEEEEEe---------CCCeEEEEe
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN------------RQLRTLRGGHRSRVGSLAW---------NNHILTTGG 243 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~------------~~~~~~~~~~~~~v~~l~~---------~~~~l~sg~ 243 (458)
....+.|+|||..|++-+.|..+.+|++... +....++-.....|...+| +..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 4567899999999999999999999987421 1112222224567778888 247899999
Q ss_pred CCCcEEEEEccCCCeeEEEEc--ccccc---eEeEEEcCCCCEEEEEECCCcEEEEeCCC-CCCCCcc-eeeeeeccccc
Q 012679 244 MDGLIINNDVRVRDHIVETYR--GHNQE---VCGLKWSASGQQLASGGNDNLLHIWDRSM-ASSNSVT-QWLHRLEEHTS 316 (458)
Q Consensus 244 ~dg~i~vwd~~~~~~~~~~~~--~h~~~---v~~l~~spd~~~l~sg~~dg~i~iwd~~~-~~~~~~~-~~~~~~~~h~~ 316 (458)
++.-|++||.-++.. ...+. .|..+ ..+++|+|||.+|++|- ...|+++|+.. +..-... ...+.-.+..+
T Consensus 131 r~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 999999999987763 23332 34333 45799999999998875 47999999843 3321111 00111223467
Q ss_pred ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-ce
Q 012679 317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-MV 394 (458)
Q Consensus 317 ~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-~~ 394 (458)
.+.+++|+|....+++.++ ....+-|++-..+.++..+. +++.|+.++|.++|+.|++.. ..+..|..||++. ..
T Consensus 209 iisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa-Rk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA-RKDDKILCWDIRYSRD 285 (406)
T ss_pred eeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccc-cCCCeEEEEeehhccc
Confidence 8899999999888999987 88888888888888887774 567899999999999999853 3577899999985 55
Q ss_pred eeEEEeCCCC-c--EEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 395 KMAELSGHTS-R--VLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 395 ~~~~~~~h~~-~--V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
++..+..|.+ . -......|+|++|++|+.||.|++||+..
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 6777877765 2 22356678999999999999999999987
No 161
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=2.4e-19 Score=170.66 Aligned_cols=247 Identities=19% Similarity=0.326 Sum_probs=178.7
Q ss_pred EEEEcC---CCCEEEEEecCCeEEEEeCCCcee------eEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCC
Q 012679 188 SVNWAP---DGRHIAIGLNNCQVQLWDSTANRQ------LRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVR 256 (458)
Q Consensus 188 ~v~~s~---~g~~la~g~~dg~v~iwd~~~~~~------~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~ 256 (458)
+..|++ ....||++..||.|.++|...... +..... |...|..+.|- ...|++++.|.++++||+.+.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~a-H~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLA-HKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccccc-ccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 356665 456899999999999999765432 233334 99999999994 478999999999999999977
Q ss_pred CeeEEE--EcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCC-----------------cce----eeeeec
Q 012679 257 DHIVET--YRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNS-----------------VTQ----WLHRLE 312 (458)
Q Consensus 257 ~~~~~~--~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~-----------------~~~----~~~~~~ 312 (458)
.. +.. +.+|.+.|.+++|.|. ...|++|+.||.|.|||++...... ..+ .+..-.
T Consensus 133 ~l-~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 133 RL-VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ee-ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 64 333 7899999999999995 5678999999999999987654110 000 112223
Q ss_pred ccccceeE---EEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE--------eC----CCCeEEEEEcCCCCeEEEE
Q 012679 313 EHTSAVKA---IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--------DT----GSQVCALLWNKNERELLSS 377 (458)
Q Consensus 313 ~h~~~v~~---l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~--------~~----~~~v~~~~~s~~~~~l~~~ 377 (458)
.+...|.+ +.+..| +..||++++ .|+.|+|||+++....... .. ...+.++.....|.+|++.
T Consensus 212 A~s~ti~ssvTvv~fkD-e~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKD-ESTLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccCceeeeeEEEEEec-cceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 34444444 444444 455666543 7999999999986543322 11 2347888899999999996
Q ss_pred ecCCCCcEEEEeCCCc--eeeEEEeCCCCcE--EEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 378 HGFTQNQLTLWKYPSM--VKMAELSGHTSRV--LFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 378 ~g~~d~~i~iwd~~~~--~~~~~~~~h~~~V--~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
+ .|+.|++|++.+. .++..+.++...- ..-..+||+.+|++|+.|+..++|.+........
T Consensus 290 C--tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 290 C--TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred e--cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 6 7999999999864 3555666554321 2235689999999999999999999987765443
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=1.1e-18 Score=157.38 Aligned_cols=206 Identities=19% Similarity=0.369 Sum_probs=167.7
Q ss_pred EecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCce-------eeEEecCCCcccEEEEEeCC---CeEEEEeCCC
Q 012679 178 TVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANR-------QLRTLRGGHRSRVGSLAWNN---HILTTGGMDG 246 (458)
Q Consensus 178 ~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~-------~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg 246 (458)
.+.+|.++|..++|+| +...||+|+.|.+|.||++..+. .+..+.+ |..+|.-++|++ +.|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCc
Confidence 3568999999999999 67789999999999999986553 3555666 999999999974 8999999999
Q ss_pred cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccc-eeEEEecC
Q 012679 247 LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA-VKAIAWCP 325 (458)
Q Consensus 247 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~p 325 (458)
+|.+|++.++..++. +. |...|.++.|+.||.+|++.+.|..|+|||.+.+.. +..-.+|.+. -..+.|-.
T Consensus 155 ~v~iWnv~tgeali~-l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~------v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 155 TVSIWNVGTGEALIT-LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV------VSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred eEEEEeccCCceeee-cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE------eeecccccCCCcceeEEec
Confidence 999999999987544 43 999999999999999999999999999999999876 5555566553 33455666
Q ss_pred CCCcEEEEeC-CCCCCeEEEEECCCC---CeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce
Q 012679 326 FQSNLLATGG-GGGDRCIKFWNTHTG---ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV 394 (458)
Q Consensus 326 ~~~~ll~s~~-g~~d~~i~lwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~ 394 (458)
++. ++.+|. ...++.+-+||..+- -.+..+++.+.|.---|.++.+.++.+ |-.|+.|+-|.+....
T Consensus 227 ~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~-GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 227 SGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC-GKGDSSIRYFEITNEP 297 (472)
T ss_pred cCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE-ecCCcceEEEEecCCC
Confidence 555 666653 346789999987653 356677788888888889998888776 7789999999987655
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=5.8e-17 Score=159.09 Aligned_cols=278 Identities=31% Similarity=0.558 Sum_probs=216.2
Q ss_pred ccceeeccCCC--eEEEEc-CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCceee
Q 012679 143 YLNLLDWGSSN--VLAIAL-GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 143 ~~~~~~~~~~~--~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~ 218 (458)
.+..+.|++.. +++++. ++.+++|+...+.. +..+.+|...|.+++|+|++. .+++++.|+.|++||...+..+
T Consensus 157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~ 234 (466)
T COG2319 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP--LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234 (466)
T ss_pred cEEEEEECCCCCEEEecCCCCCceEEEEcCCCce--EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEE
Confidence 45578887744 444443 99999999988655 666777999999999999998 5555599999999998877777
Q ss_pred E-EecCCCcccE-EEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679 219 R-TLRGGHRSRV-GSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 219 ~-~~~~~~~~~v-~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~ 296 (458)
. .+.. |...+ ..+..++..+++++.|+.+++|+++........+.+|...|.++.|+|++..+++++.|+.+.+||.
T Consensus 235 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 235 RSTLSG-HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred eeecCC-CCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 7 4665 77763 3333356788899999999999998766533444788999999999999999988999999999988
Q ss_pred CCCCCCCcceeeeee--cccccceeEEEecCCC-CcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCe
Q 012679 297 SMASSNSVTQWLHRL--EEHTSAVKAIAWCPFQ-SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERE 373 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~-~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~ 373 (458)
..... .... ..|...+..+.| +.. ..++..+. .|+.+.+|+...............+..+.+.+ . .
T Consensus 314 ~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 382 (466)
T COG2319 314 ETGKL------LSSLTLKGHEGPVSSLSF-SPDGSLLVSGGS--DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-G 382 (466)
T ss_pred CCCce------EEEeeecccCCceEEEEE-CCCCCEEEEeec--CCCcEEeeecCCCceeEEecCCceEEEEEECC-C-C
Confidence 77665 3333 367778999999 533 34444433 77999999999888444444444488999999 6 5
Q ss_pred EEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 374 l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
.....+..++.+.+|+............+...+....+++++..+++++.++.+++|++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 5554356889999999999888877765547889999999999999999999999999987
No 164
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=2.8e-17 Score=161.18 Aligned_cols=273 Identities=16% Similarity=0.229 Sum_probs=220.5
Q ss_pred eeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCc
Q 012679 147 LDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR 226 (458)
Q Consensus 147 ~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~ 226 (458)
.+-....+++.+-|.+..+||.+.-.. +..-+.+...|+|++-..+ ++.+++.. .|.+|. .++.++.+...|.
T Consensus 42 ~~~~~~~~vtt~vgksfqvYd~~kl~l--l~vs~~lp~~I~alas~~~--~vy~A~g~-~i~~~~--rgk~i~~~~~~~~ 114 (910)
T KOG1539|consen 42 VALGSTFYVTTCVGKSFQVYDVNKLNL--LFVSKPLPDKITALASDKD--YVYVASGN-KIYAYA--RGKHIRHTTLLHG 114 (910)
T ss_pred eecCceEEEEEecCceEEEEeccceEE--EEecCCCCCceEEEEecCc--eEEEecCc-EEEEEE--ccceEEEEecccc
Confidence 333446688899999999999886554 5555677889999986544 55555444 677775 5655555554588
Q ss_pred ccEEEEEeCCCeEEEEeCCCcEEEEEccCCCee----EEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCC
Q 012679 227 SRVGSLAWNNHILTTGGMDGLIINNDVRVRDHI----VETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 227 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~----~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
+.|.-+..-|..++++..++.+.+|+....+.. ...++.....|+++. +|. -+.++.|+.+|.+.+|++++++
T Consensus 115 a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K 193 (910)
T KOG1539|consen 115 AKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGK 193 (910)
T ss_pred ceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCc
Confidence 899999988999999999999999998874211 122233333477664 563 4678999999999999999998
Q ss_pred CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEec
Q 012679 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHG 379 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g 379 (458)
. ++++.++...|+++.-+| --.++|.|. .+|+|.++|++.++.+.++++. ++|+++.|..||..++++ |
T Consensus 194 ~------v~~f~~~~s~IT~ieqsP-aLDVVaiG~--~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las-~ 263 (910)
T KOG1539|consen 194 V------VYTFQEFFSRITAIEQSP-ALDVVAIGL--ENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLAS-G 263 (910)
T ss_pred E------EEEecccccceeEeccCC-cceEEEEec--cCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEe-c
Confidence 8 999999999999999998 466777766 9999999999999999999996 999999999999999887 5
Q ss_pred CCCCcEEEEeCCCceeeEEEe-CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679 380 FTQNQLTLWKYPSMVKMAELS-GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 380 ~~d~~i~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
...|.+.+||+...+.+..+. .|.+.|..+.|.|....+++++.|..+++|=...++-
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg 322 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG 322 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCC
Confidence 688999999999988887776 7999999999999999999999999999997764443
No 165
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.7e-18 Score=154.75 Aligned_cols=248 Identities=15% Similarity=0.279 Sum_probs=187.4
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC------CceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEE
Q 012679 178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST------ANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLII 249 (458)
Q Consensus 178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~------~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~ 249 (458)
.+.+|.+.|.++.|+.++++||+|+.|..++||.+. +.+.+......|...|.||+|+ +..+++|+.+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 456899999999999999999999999999999975 3466666666677999999996 68899999999999
Q ss_pred EEEccCCCeeEEEE--cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679 250 NNDVRVRDHIVETY--RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327 (458)
Q Consensus 250 vwd~~~~~~~~~~~--~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 327 (458)
..|+++.+.+ ..+ ....+.|..+..+|-.+.|++.+.++.|.+||.+....... +..+.........+.|+|..
T Consensus 131 ~HDiEt~qsi-~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~---~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 131 KHDIETKQSI-YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS---LVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eeecccceee-eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc---eeeecCCCccceeeeecCCC
Confidence 9999988753 222 23345899999999999999999999999999987653222 22233345567888999999
Q ss_pred CcEEEEeCCCCCCeEEEEECCCCCe-e-------------------------------------------------EEEe
Q 012679 328 SNLLATGGGGGDRCIKFWNTHTGAC-L-------------------------------------------------NSVD 357 (458)
Q Consensus 328 ~~ll~s~~g~~d~~i~lwd~~~~~~-~-------------------------------------------------~~~~ 357 (458)
+.|+++.+ ..+-+-+||.+..+. + ..++
T Consensus 207 P~Li~~~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 207 PALILVNS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred ceeEEecc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 99999876 777788898764320 0 0000
Q ss_pred CCC-------CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-----------------------eeeEEEeCCCCcEE
Q 012679 358 TGS-------QVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-----------------------VKMAELSGHTSRVL 407 (458)
Q Consensus 358 ~~~-------~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-----------------------~~~~~~~~h~~~V~ 407 (458)
+.. .+.+++|..+.. +++ |..+-.|++|.++.. ..+..++||.+.+.
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~-v~t--GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~N 361 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYT-VAT--GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPN 361 (609)
T ss_pred CCCCcceeeeeeeeeeeeccee-eec--cCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccc
Confidence 000 122334433333 333 778889999998531 12446789999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 408 FMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 408 ~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
.+.|+|...+|++.+....++||.-..
T Consensus 362 QVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 362 QVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred ceeecCCcceEeccchhhheecccccc
Confidence 999999999999999999999997543
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=2.2e-18 Score=156.16 Aligned_cols=281 Identities=18% Similarity=0.248 Sum_probs=196.1
Q ss_pred CCeEEEEcCCEEEEEECCCC-------CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC--------C--
Q 012679 152 SNVLAIALGSTVYLWDASDG-------TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST--------A-- 214 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~-------~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~--------~-- 214 (458)
+.+++++.|..|++|-+..+ ++.-+..+..|...|++|.|+|+|..||+|+.+|.|.+|... +
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~ 106 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA 106 (434)
T ss_pred cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence 37899999999999987643 344466788999999999999999999999999999999755 2
Q ss_pred ------ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE
Q 012679 215 ------NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG 286 (458)
Q Consensus 215 ------~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~ 286 (458)
....+.+.+ |...|..++| ++.++++|+.|..+++||+..+.. ...+.+|...|..++|.|-++++++-+
T Consensus 107 ~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 107 DLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred hhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchhhhhhhhhc
Confidence 112333444 9999999999 578999999999999999998774 788889999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCcce---------------eeeeec--ccccceeEEEecCCCCcEEEEeCCC-------CCCeE
Q 012679 287 NDNLLHIWDRSMASSNSVTQ---------------WLHRLE--EHTSAVKAIAWCPFQSNLLATGGGG-------GDRCI 342 (458)
Q Consensus 287 ~dg~i~iwd~~~~~~~~~~~---------------~~~~~~--~h~~~v~~l~~~p~~~~ll~s~~g~-------~d~~i 342 (458)
.|...+++.+.......... ...-+. .-..-...++|+|+|..++ +..|. .-++.
T Consensus 185 ~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv-tPag~~~~g~~~~~n~t 263 (434)
T KOG1009|consen 185 SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV-TPAGLFKVGGGVFRNTS 263 (434)
T ss_pred cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE-cccceeeeCCceeecee
Confidence 99877777765443311100 000000 0112345688999765544 33221 11233
Q ss_pred EEEECCC-CCeeEEEeC-CCCeEEEEEcC-----------------CCCeEEEEecCCCCcEEEEeCCCceeeEEEe-CC
Q 012679 343 KFWNTHT-GACLNSVDT-GSQVCALLWNK-----------------NERELLSSHGFTQNQLTLWKYPSMVKMAELS-GH 402 (458)
Q Consensus 343 ~lwd~~~-~~~~~~~~~-~~~v~~~~~s~-----------------~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-~h 402 (458)
++++-.. .++...+.. ......+.++| ..+.+++.. ..+.|.|||..+..++..+. -|
T Consensus 264 Yvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA--t~~svyvydtq~~~P~~~v~nih 341 (434)
T KOG1009|consen 264 YVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA--TKNSVYVYDTQTLEPLAVVDNIH 341 (434)
T ss_pred EeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe--ecceEEEeccccccceEEEeeee
Confidence 4443321 112222222 12223333332 122233322 47899999999988887764 47
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679 403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
-..|+.++|++||.+|+..+.||...+-.+...+.
T Consensus 342 y~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 342 YSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 88999999999999999999999887776655443
No 167
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=5.2e-18 Score=147.49 Aligned_cols=282 Identities=16% Similarity=0.281 Sum_probs=199.9
Q ss_pred CCCccccceeecc----CC-CeEEEEc----CCEEEEEEC--CCCCeeeEEEecCCCCCEEEEEEcCCCC-----EEEEE
Q 012679 138 LVDDYYLNLLDWG----SS-NVLAIAL----GSTVYLWDA--SDGTTSELVTVDDENGPVTSVNWAPDGR-----HIAIG 201 (458)
Q Consensus 138 ~~~d~~~~~~~~~----~~-~~la~~~----d~~v~iwd~--~~~~~~~~~~~~~h~~~V~~v~~s~~g~-----~la~g 201 (458)
....+.+-.++|+ .. +++.++. .+.|.|-.+ ++++.....+ -.|.-+++.+.|.|+.. +||+.
T Consensus 41 Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs 119 (364)
T KOG0290|consen 41 YNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATS 119 (364)
T ss_pred ecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhcc
Confidence 3445667778887 33 3444443 356666544 4455433333 25888999999999753 45544
Q ss_pred ecCCeEEEEeCCCceeeE----Ee----cCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCC--CeeEEEEccccc
Q 012679 202 LNNCQVQLWDSTANRQLR----TL----RGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVR--DHIVETYRGHNQ 268 (458)
Q Consensus 202 ~~dg~v~iwd~~~~~~~~----~~----~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~~h~~ 268 (458)
.| .+++|.+...+... .+ ...+.++++++.|+ +++|.+.+-|.+..|||++++ ..+...+.+|..
T Consensus 120 -~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK 197 (364)
T KOG0290|consen 120 -SD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK 197 (364)
T ss_pred -cC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc
Confidence 34 79999887422111 11 12367899999995 799999999999999999986 335678889999
Q ss_pred ceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679 269 EVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT 347 (458)
Q Consensus 269 ~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~ 347 (458)
+|..++|...+ +.||+.|.||.|++||++....... +..-.....+...++|++...+++|+-. .....|.+.|+
T Consensus 198 EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI---IYE~p~~~~pLlRLswnkqDpnymATf~-~dS~~V~iLDi 273 (364)
T KOG0290|consen 198 EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI---IYEDPSPSTPLLRLSWNKQDPNYMATFA-MDSNKVVILDI 273 (364)
T ss_pred ceeEEEeccCccceEEEecCCCcEEEEEecccccceE---EecCCCCCCcceeeccCcCCchHHhhhh-cCCceEEEEEe
Confidence 99999999854 4789999999999999998765311 2222222567889999999999988864 24467999999
Q ss_pred CCC-CeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee------eEEEeCCCCcEEEEEEcC-CCCEE
Q 012679 348 HTG-ACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK------MAELSGHTSRVLFMAQSP-DGCTV 418 (458)
Q Consensus 348 ~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~------~~~~~~h~~~V~~l~~sp-dg~~l 418 (458)
+.. .++..+ .+.+.|+.++|.|....-++++| +|.+..|||+.+.-. +..+. -.+.|..+.|++ .+.+|
T Consensus 274 R~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG-DD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 274 RVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG-DDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWI 351 (364)
T ss_pred cCCCcceehhhcCcccccceEecCCCCceeeecC-CcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEE
Confidence 874 455555 45788999999999887777755 899999999976433 22222 456799999996 56677
Q ss_pred EEEeCCCcEEE
Q 012679 419 ASAAADETLRF 429 (458)
Q Consensus 419 ~s~s~Dg~i~i 429 (458)
+.+.. ..+.+
T Consensus 352 ai~~~-kklei 361 (364)
T KOG0290|consen 352 AICFG-KKLEI 361 (364)
T ss_pred EEEec-CeeeE
Confidence 76543 34433
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7e-19 Score=154.45 Aligned_cols=195 Identities=15% Similarity=0.261 Sum_probs=158.3
Q ss_pred EEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcce
Q 012679 229 VGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQ 306 (458)
Q Consensus 229 v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 306 (458)
..|+.|+ |.+|++|+.+|.|.+||+.+.. +.+.+.+|..+|++++||+||+.|++++.|..|.+||+..+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~----- 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP----- 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-----
Confidence 6788885 8999999999999999998876 4678889999999999999999999999999999999999886
Q ss_pred eeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee-EEEeCCC----CeEEEEEcCCCCeEEEEecCC
Q 012679 307 WLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL-NSVDTGS----QVCALLWNKNERELLSSHGFT 381 (458)
Q Consensus 307 ~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~-~~~~~~~----~v~~~~~s~~~~~l~~~~g~~ 381 (458)
++.+. ..++|....|+|...+.+++.- .+..-.+-++..++.. ...+..+ ...+..|.+.|+++++ |..
T Consensus 100 -l~rir-f~spv~~~q~hp~k~n~~va~~--~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit--Gts 173 (405)
T KOG1273|consen 100 -LKRIR-FDSPVWGAQWHPRKRNKCVATI--MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT--GTS 173 (405)
T ss_pred -eeEEE-ccCccceeeeccccCCeEEEEE--ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE--ecC
Confidence 55553 4789999999998777665543 4444555555542211 1111111 1233469999999999 778
Q ss_pred CCcEEEEeCCCceeeEEEeCCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 382 QNQLTLWKYPSMVKMAELSGHT-SRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 382 d~~i~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
.|.+.++|..+.+.++.++-.+ ..|.++.++..|++|+.-+.|..||.|++..-
T Consensus 174 KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 174 KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 9999999999999999988666 78999999999999999999999999998743
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=2e-16 Score=155.27 Aligned_cols=279 Identities=27% Similarity=0.524 Sum_probs=212.1
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCC-CCEEEEEE-cCCCC-EEEEEec-CCeEEEEeCCC-c
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDEN-GPVTSVNW-APDGR-HIAIGLN-NCQVQLWDSTA-N 215 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~-~~V~~v~~-s~~g~-~la~g~~-dg~v~iwd~~~-~ 215 (458)
.+..+.+.. ..++.++.++.+.+|+...+. .....+..+. ..+..+.+ ++++. +++..+. |+.+.+||... .
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 145 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCC
Confidence 344455544 456666679999999998875 1244444433 36777777 88887 5555444 99999999998 6
Q ss_pred eeeEEecCCCcccEEEEEeC--CCeEEEEeC-CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEEEECCCcE
Q 012679 216 RQLRTLRGGHRSRVGSLAWN--NHILTTGGM-DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLASGGNDNLL 291 (458)
Q Consensus 216 ~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~sg~~dg~i 291 (458)
.....+.. |...|..++|. +..+++++. ++.+.+|++.... .+..+.+|...|.+++|+|++. .+++++.|+.|
T Consensus 146 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 146 KLIRTLEG-HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred eEEEEEec-CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence 77777776 99999999994 567888875 9999999998744 4677778999999999999998 55666999999
Q ss_pred EEEeCCCCCCCCcceeee-eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe-eEEE-eCCCCeEEEEEc
Q 012679 292 HIWDRSMASSNSVTQWLH-RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-LNSV-DTGSQVCALLWN 368 (458)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-~~~~-~~~~~v~~~~~s 368 (458)
++||...+.. .. .+..|...+ ...|+|++ .++++++ .|+.+++|+...... +..+ .+...+.++.|.
T Consensus 224 ~~wd~~~~~~------~~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 293 (466)
T COG2319 224 RLWDLSTGKL------LRSTLSGHSDSV-VSSFSPDG-SLLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293 (466)
T ss_pred EEEECCCCcE------EeeecCCCCcce-eEeECCCC-CEEEEec--CCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence 9998774433 44 577787775 44899987 5555655 999999999997765 4444 346789999999
Q ss_pred CCCCeEEEEecCCCCcEEEEeCCCceeeEEEe--CCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCC
Q 012679 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELS--GHTSRVLFMAQSPDGCTVASA-AADETLRFWNVFGAP 436 (458)
Q Consensus 369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~-s~Dg~i~iW~~~~~~ 436 (458)
|++..+++ .+ .++.+.+|+..+........ .|...+..+.+.+++..++.+ ..|+.+.+|++....
T Consensus 294 ~~~~~~~~-~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 294 PDGKLLAS-GS-SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCCEEEE-ee-CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 98888888 34 55889999998888777665 888889999994343566656 688999999998776
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=3.7e-18 Score=154.12 Aligned_cols=201 Identities=21% Similarity=0.437 Sum_probs=161.9
Q ss_pred CCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCC------eeEEEEcccccceEeEEEcCC-CCEEEEEECCCcEE
Q 012679 223 GGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRD------HIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLH 292 (458)
Q Consensus 223 ~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~ 292 (458)
.+|.++|..++|+ .+.|++|+.|.+|.||++..+. ..+..+.+|...|--++|+|. .+.|++++.|++|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 3599999999994 6899999999999999987543 346788999999999999994 67889999999999
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--CCCeEEEEEcCC
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--GSQVCALLWNKN 370 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~s~~ 370 (458)
+||+.++.. +.++. |..-|.++.|+-+|..+..++ .|+.|++||.++++.+..-.. +.......|-.+
T Consensus 158 iWnv~tgea------li~l~-hpd~i~S~sfn~dGs~l~Ttc---kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 158 IWNVGTGEA------LITLD-HPDMVYSMSFNRDGSLLCTTC---KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred EEeccCCce------eeecC-CCCeEEEEEeccCCceeeeec---ccceeEEEcCCCCcEeeecccccCCCcceeEEecc
Confidence 999999987 66666 999999999999766555544 899999999999999887633 345667788889
Q ss_pred CCeEEEEecC---CCCcEEEEeCCCcee---eEEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCC
Q 012679 371 ERELLSSHGF---TQNQLTLWKYPSMVK---MAELSGHTSRVLFMAQSPDGCTVASAA-ADETLRFWNVFGAP 436 (458)
Q Consensus 371 ~~~l~~~~g~---~d~~i~iwd~~~~~~---~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~~~ 436 (458)
+. ++++ |+ ++.++.+||....+. +.++. ..+.|.-=-|.+|...|..+| .|+.||.|.+.+..
T Consensus 228 g~-i~tT-Gfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 228 GK-IFTT-GFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred Cc-eeee-ccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 98 4443 65 367999999876553 33443 334566667888888886666 69999999998766
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=8e-18 Score=148.33 Aligned_cols=270 Identities=17% Similarity=0.272 Sum_probs=202.2
Q ss_pred ccceeeccCC--CeEEEEcCCEEEEEECCCC----C--------eeeEEEecCCCCCEEEEEEc-------CCCCEEEEE
Q 012679 143 YLNLLDWGSS--NVLAIALGSTVYLWDASDG----T--------TSELVTVDDENGPVTSVNWA-------PDGRHIAIG 201 (458)
Q Consensus 143 ~~~~~~~~~~--~~la~~~d~~v~iwd~~~~----~--------~~~~~~~~~h~~~V~~v~~s-------~~g~~la~g 201 (458)
++..+.|+|+ -+++-+.|+.+.+|++... + ......+. ....|...+|- |+..++|+.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCccceeeec
Confidence 4556778884 4889999999999997521 0 11122222 24568888886 577899999
Q ss_pred ecCCeEEEEeCCCceeeEEecC-CCcc---cEEEEEe--CCCeEEEEeCCCcEEEEEcc-CCCe-eEEEE-----ccccc
Q 012679 202 LNNCQVQLWDSTANRQLRTLRG-GHRS---RVGSLAW--NNHILTTGGMDGLIINNDVR-VRDH-IVETY-----RGHNQ 268 (458)
Q Consensus 202 ~~dg~v~iwd~~~~~~~~~~~~-~~~~---~v~~l~~--~~~~l~sg~~dg~i~vwd~~-~~~~-~~~~~-----~~h~~ 268 (458)
+.+.-|++||.-+|+....+.. .|.. ...+++| +|..|++|. ...|+++|+. .+.. .+... .+..+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 9999999999999998877663 1333 3457888 467777765 5689999994 3321 11111 23467
Q ss_pred ceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679 269 EVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT 347 (458)
Q Consensus 269 ~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~ 347 (458)
-|.+++|+| +.+.++.|+....+-||.-..... +..+.+|.+.|+.+.|+++|+.++.-+ ..|-.|..||+
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p------l~llggh~gGvThL~~~edGn~lfsGa--Rk~dkIl~WDi 280 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP------LQLLGGHGGGVTHLQWCEDGNKLFSGA--RKDDKILCWDI 280 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCc------eeeecccCCCeeeEEeccCcCeecccc--cCCCeEEEEee
Confidence 789999999 556899999999988888766665 788889999999999999988776533 37889999999
Q ss_pred CCC-CeeEEEeC----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-ceeeEEEeCCCCcEEEEEEcCCCCEEEEE
Q 012679 348 HTG-ACLNSVDT----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-MVKMAELSGHTSRVLFMAQSPDGCTVASA 421 (458)
Q Consensus 348 ~~~-~~~~~~~~----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 421 (458)
+.. .++..+.. ..+-.-+...|+++.|++ |..+|.|++||+.. +..+..+..|...|+.++++|--.+++|+
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~Las--G~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPKGEILAS--GDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCCCceeec--cCCCccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence 864 34444422 234445666788999888 88999999999998 67788888899999999999998888888
Q ss_pred eCC
Q 012679 422 AAD 424 (458)
Q Consensus 422 s~D 424 (458)
+..
T Consensus 359 sGq 361 (406)
T KOG2919|consen 359 SGQ 361 (406)
T ss_pred cCc
Confidence 765
No 172
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.4e-18 Score=150.32 Aligned_cols=207 Identities=21% Similarity=0.283 Sum_probs=153.7
Q ss_pred EecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCe----eEEEEcccccceEeEEEcCCCCEEE-EEECCCcEE
Q 012679 220 TLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDH----IVETYRGHNQEVCGLKWSASGQQLA-SGGNDNLLH 292 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~l~~spd~~~l~-sg~~dg~i~ 292 (458)
.+++ |...|++++| +|+.|++++.|+.|++|+++.-.. .++.- -.-+..+.+.|.||-+-++ ++-+.+.++
T Consensus 81 ~LKg-H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 81 VLKG-HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhc-cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3445 9999999999 689999999999999999975321 11111 1123467889999987654 445667899
Q ss_pred EEeCCCCCCCCcc---ee---eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEE
Q 012679 293 IWDRSMASSNSVT---QW---LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCAL 365 (458)
Q Consensus 293 iwd~~~~~~~~~~---~~---~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~ 365 (458)
+|-+...+..... .. +.--+.|...+..+-... +..++++++ .|..|.+|+++ |+.+..+++. ......
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas--~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSAS--LDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEec--CCCcEEEEecC-Cceeeeeccccccccce
Confidence 9986544321111 11 111234666666666655 566777776 89999999998 9999999875 456778
Q ss_pred EEcCCCCeEEEEecCCCCcEEEEeCC--------CceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 366 LWNKNERELLSSHGFTQNQLTLWKYP--------SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 366 ~~s~~~~~l~~~~g~~d~~i~iwd~~--------~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
+.+|+|++++++ |+ .-.|++|..- .-..+.+++||...|+.++||++...++|.+.||+++|||+.-
T Consensus 235 avSP~GRFia~~-gF-TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 235 AVSPDGRFIAVS-GF-TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeCCCCcEEEEe-cC-CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 899999999986 43 5579999852 2245678899999999999999999999999999999999864
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=7.1e-18 Score=146.50 Aligned_cols=249 Identities=19% Similarity=0.309 Sum_probs=177.1
Q ss_pred EEEEEECCCCC-------eeeEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee-eEEecC----CCccc
Q 012679 162 TVYLWDASDGT-------TSELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ-LRTLRG----GHRSR 228 (458)
Q Consensus 162 ~v~iwd~~~~~-------~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~-~~~~~~----~~~~~ 228 (458)
.+.||.+.... ++.+..+. .+-+.|.||.|.|++..+|+-. |..|.+|++..+.. +..+.. .+...
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS 172 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence 56799876432 22344444 3456899999999999988776 77999999987765 444332 25566
Q ss_pred EEEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEEEECCCcEEEEeCCCCCCCC
Q 012679 229 VGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLASGGNDNLLHIWDRSMASSNS 303 (458)
Q Consensus 229 v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~sg~~dg~i~iwd~~~~~~~~ 303 (458)
.++-+|+ ++.+ ....|+++..||+++..+....-.+|...|..+.|+|+.+ +|++|+.||.|+|||.+..+.+
T Consensus 173 ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p- 250 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP- 250 (370)
T ss_pred ecccccCCCCccceE-EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc-
Confidence 7777884 3444 4456899999999988776666678999999999999866 5789999999999999987663
Q ss_pred cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC
Q 012679 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN 383 (458)
Q Consensus 304 ~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~ 383 (458)
++.+.+|...|.++.|+|....|+.+++ .|..|.+|....-.....+. +..+....- + .+.
T Consensus 251 ----v~el~~HsHWvW~VRfn~~hdqLiLs~~--SDs~V~Lsca~svSSE~qi~---------~~~dese~e---~-~ds 311 (370)
T KOG1007|consen 251 ----VQELPGHSHWVWAVRFNPEHDQLILSGG--SDSAVNLSCASSVSSEQQIE---------FEDDESESE---D-EDS 311 (370)
T ss_pred ----ccccCCCceEEEEEEecCccceEEEecC--CCceeEEEeccccccccccc---------cccccccCc---c-hhh
Confidence 8889999999999999999999999987 99999999876533222221 111100000 0 000
Q ss_pred cEEEEeCCCceeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEecC
Q 012679 384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 384 ~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~~ 433 (458)
.=++ +.-....+.++..|.+.|.+++||. |.=.+|+-+.||.+.|=++.
T Consensus 312 eer~-kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 312 EERV-KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred HHhc-ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0000 0111123456778999999999997 44567888999999887663
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=2.1e-18 Score=147.95 Aligned_cols=293 Identities=16% Similarity=0.217 Sum_probs=198.5
Q ss_pred CCCCCceeeeCCCCCCccccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEec-CCCCCEEEEEEcCCCCEEEEEe
Q 012679 125 IPQSSERTLDAPDLVDDYYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVD-DENGPVTSVNWAPDGRHIAIGL 202 (458)
Q Consensus 125 i~~~~~~~l~~~~~~~d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~ 202 (458)
+|..|..+|. |... .++++-+.. ++++++..-|.|.+|++.+... +..+. .|...|+.+.-.|+ ..|.+-+
T Consensus 2 ~pPdP~fvLR-p~~~---~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~--~~~~r~~g~~~it~lq~~p~-d~l~tqg 74 (323)
T KOG0322|consen 2 VPPDPFFVLR-PHSS---SVTSVLFQANERLMSGLSVGIVKMWVLQTERD--LPLIRLFGRLFITNLQSIPN-DSLDTQG 74 (323)
T ss_pred CCCCCeeEec-cccc---hheehhhccchhhhcccccceEEEEEeecCcc--chhhhhhccceeeceeecCC-cchhhcC
Confidence 4567777777 3322 355555544 6799999999999999998776 34444 45778999998887 4577888
Q ss_pred cCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCC-cEEEEEccC---------CCe-eEEEE----cccc
Q 012679 203 NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDG-LIINNDVRV---------RDH-IVETY----RGHN 267 (458)
Q Consensus 203 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg-~i~vwd~~~---------~~~-~~~~~----~~h~ 267 (458)
.|+.+.+|++..+..+.. |.-.+.++.|-..-+...+... ....|+-+. +.. .+... .+..
T Consensus 75 Rd~~L~lw~ia~s~~i~i----~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 75 RDPLLILWTIAYSAFISI----HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKL 150 (323)
T ss_pred CCceEEEEEccCcceEEE----eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcccc
Confidence 999999999987554332 4444555555322222222211 111111111 111 01111 1334
Q ss_pred cceEeEEEcC-CCC--EEEEEECCCcEEEEeCCCCCCC----CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC
Q 012679 268 QEVCGLKWSA-SGQ--QLASGGNDNLLHIWDRSMASSN----SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR 340 (458)
Q Consensus 268 ~~v~~l~~sp-d~~--~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~ 340 (458)
+.+.+..|.. ++. +|++|-++|.+.+||+..+... ...+.......|..+|.++.+.+....- ++|+ .+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG-isgg--a~d 227 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG-ISGG--ADD 227 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC-cCCC--ccc
Confidence 5677776543 233 4577889999999999986321 1111134456789999999998743333 3333 777
Q ss_pred eEEEEECCCC--Cee--EEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC
Q 012679 341 CIKFWNTHTG--ACL--NSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG 415 (458)
Q Consensus 341 ~i~lwd~~~~--~~~--~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg 415 (458)
.+..|++... .+. ..+.. +..+..+.+.||++.++++. -|+.|+||+.+++.+++.++.|.+.|.+++|+|+.
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG--WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~ 305 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG--WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC 305 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc--cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC
Confidence 8888887643 221 22222 34588889999999999863 89999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEecC
Q 012679 416 CTVASAAADETLRFWNVF 433 (458)
Q Consensus 416 ~~l~s~s~Dg~i~iW~~~ 433 (458)
..+|+++.|++|-+|++.
T Consensus 306 ~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 306 ELMAAASKDARISLWKLY 323 (323)
T ss_pred chhhhccCCceEEeeecC
Confidence 999999999999999973
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=8.9e-18 Score=146.04 Aligned_cols=234 Identities=21% Similarity=0.357 Sum_probs=177.5
Q ss_pred CCCccccceeeccCCC-----eEEEEcCCEEEEEECCC--CCeeeEEEe-----cCCCCCEEEEEEcC-CCCEEEEEecC
Q 012679 138 LVDDYYLNLLDWGSSN-----VLAIALGSTVYLWDASD--GTTSELVTV-----DDENGPVTSVNWAP-DGRHIAIGLNN 204 (458)
Q Consensus 138 ~~~d~~~~~~~~~~~~-----~la~~~d~~v~iwd~~~--~~~~~~~~~-----~~h~~~V~~v~~s~-~g~~la~g~~d 204 (458)
+...|..+.+-|.+.. -+.++.+..+++|.+.. ++......+ ..+..++++..|+. |-++|.+.+-|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 3445566777776633 24455667999999873 333222222 24567899999997 78899999999
Q ss_pred CeEEEEeCCCcee--eEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEccc--ccceEeEEEcC
Q 012679 205 CQVQLWDSTANRQ--LRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGH--NQEVCGLKWSA 277 (458)
Q Consensus 205 g~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h--~~~v~~l~~sp 277 (458)
-+..|||++++.. +++-...|...|..++|. -..+++.+.||.++++|++..++..-.+... ..+...++|++
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 9999999999733 344333499999999994 3899999999999999999887754445432 45778899988
Q ss_pred -CCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC----
Q 012679 278 -SGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA---- 351 (458)
Q Consensus 278 -d~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~---- 351 (458)
|-+++|+-.. ...|.|.|++.+..+ +..+.+|.+.|.+++|.|.....++++| .|....+||+...-
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P~tp-----va~L~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVPCTP-----VARLRNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQMPRENG 325 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCCCcc-----eehhhcCcccccceEecCCCCceeeecC--CcceEEEEecccccccCC
Confidence 5567776554 457999999987653 7889999999999999999999999998 99999999997632
Q ss_pred --eeEEEeCCCCeEEEEEcCC-CCeEEEEe
Q 012679 352 --CLNSVDTGSQVCALLWNKN-ERELLSSH 378 (458)
Q Consensus 352 --~~~~~~~~~~v~~~~~s~~-~~~l~~~~ 378 (458)
++..+..++.|+.+.|++. ...++++.
T Consensus 326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 326 EDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred CCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 3444556788999999964 45555543
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=4.1e-18 Score=147.95 Aligned_cols=202 Identities=26% Similarity=0.434 Sum_probs=164.5
Q ss_pred ccceeeccCCC-eEEEEcCCEEEEEECCCCCeeeEEEe-----cCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCC
Q 012679 143 YLNLLDWGSSN-VLAIALGSTVYLWDASDGTTSELVTV-----DDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTA 214 (458)
Q Consensus 143 ~~~~~~~~~~~-~la~~~d~~v~iwd~~~~~~~~~~~~-----~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~ 214 (458)
.++|+.|.|+. -++.-.++.|.+|+++.+... ...+ .++....++-+|+| +|+.+++. .|++++.||+++
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT 202 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRT 202 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccc
Confidence 58899999843 444445999999999876541 1111 13466788999999 78887765 577999999999
Q ss_pred ceeeEEecCCCcccEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCc
Q 012679 215 NRQLRTLRGGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNL 290 (458)
Q Consensus 215 ~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~ 290 (458)
.++...+...|...|..+.||+ .+|++|+.||.|++||.+....++..+.+|...|.++.|+| ..+++++||.|..
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence 9999999988999999999985 68999999999999999998888999999999999999999 4677899999999
Q ss_pred EEEEeCCCCCCCC-----------------------cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679 291 LHIWDRSMASSNS-----------------------VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT 347 (458)
Q Consensus 291 i~iwd~~~~~~~~-----------------------~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~ 347 (458)
|.+|....-.... ....+.++..|...|.+++|+.-.+.++|+-+ .||.+.|=.+
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS--YDGRviIs~V 360 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS--YDGRVIISSV 360 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec--cCceEEeecC
Confidence 9999865433110 01124578889999999999999999999988 9999887655
Q ss_pred C
Q 012679 348 H 348 (458)
Q Consensus 348 ~ 348 (458)
.
T Consensus 361 ~ 361 (370)
T KOG1007|consen 361 P 361 (370)
T ss_pred C
Confidence 4
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.3e-17 Score=163.35 Aligned_cols=279 Identities=18% Similarity=0.254 Sum_probs=196.2
Q ss_pred eeccC-CCeEEEEc-CCEEEEEECCCCCeeeEEEecCC---CCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCC-----
Q 012679 147 LDWGS-SNVLAIAL-GSTVYLWDASDGTTSELVTVDDE---NGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTA----- 214 (458)
Q Consensus 147 ~~~~~-~~~la~~~-d~~v~iwd~~~~~~~~~~~~~~h---~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~----- 214 (458)
+.+++ ...++++. ...|.|||.+.++. +..+..+ ...|+.+.+.. |..++++|+.||.|+||+--.
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~--l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRL--LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCce--eccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence 44445 34455555 56899999998886 4444332 35799999876 567899999999999996422
Q ss_pred ceeeEEecC------CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEE
Q 012679 215 NRQLRTLRG------GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASG 285 (458)
Q Consensus 215 ~~~~~~~~~------~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg 285 (458)
.+.+....+ +..+.-.-+.|. ..+|++++.-..|+|||......+.....+....|+++.-+- .|+.+++|
T Consensus 1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEe
Confidence 233322221 111222446673 344555555789999999876654444445556677776543 47999999
Q ss_pred ECCCcEEEEeCCCCCCCCcceeeeeecccccc--eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE--EE----e
Q 012679 286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA--VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN--SV----D 357 (458)
Q Consensus 286 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~--~~----~ 357 (458)
..||.|++||.+..... ..+...+.|+.. |..+.+.+.|-.-+++|+ .||.|++||++...... ++ +
T Consensus 1228 faDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred ecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccc
Confidence 99999999999887653 225667788887 999999987666677766 99999999999843222 22 2
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-------CCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679 358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-------TSRVLFMAQSPDGCTVASAAADETLRFW 430 (458)
Q Consensus 358 ~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-------~~~V~~l~~spdg~~l~s~s~Dg~i~iW 430 (458)
.++..+++..+++...+++ |.. +.|.||++... ++..++.+ .+.+.|++|+|-.-.+|.|+.|.+|.||
T Consensus 1303 yGs~lTal~VH~hapiiAs--Gs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIAS--GSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred cCccceeeeeccCCCeeee--cCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 2556999999999999988 544 89999998543 22222222 3567999999999999999999999999
Q ss_pred ecCCCC
Q 012679 431 NVFGAP 436 (458)
Q Consensus 431 ~~~~~~ 436 (458)
......
T Consensus 1379 s~~k~~ 1384 (1387)
T KOG1517|consen 1379 SCEKPR 1384 (1387)
T ss_pred ecCCcC
Confidence 886544
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.2e-16 Score=135.64 Aligned_cols=234 Identities=16% Similarity=0.223 Sum_probs=176.1
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCC---------ce-eeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEcc
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTA---------NR-QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR 254 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~---------~~-~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 254 (458)
.|.+-+|+|.+++|++|..+|.|.+..+.+ ++ .+...+ +|.++|..++|...+|++|+. |.|+-|..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq-ahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~ 89 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ-AHDGPIYYLAFHDDFLLSGGD-GLVYGWEWN 89 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecc-ccCCCeeeeeeehhheeeccC-ceEEEeeeh
Confidence 356678999999999999999999998753 22 223334 499999999999888888876 999999876
Q ss_pred CCCee------E-EEEccc-----ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEE
Q 012679 255 VRDHI------V-ETYRGH-----NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA 322 (458)
Q Consensus 255 ~~~~~------~-~~~~~h-----~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~ 322 (458)
..... . ....-| --+|+++...|..+-++.++.|+.++-||+++++. ...+++|+..|.+++
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i------~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI------QREYRGHTDYVHSVV 163 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE------EEEEcCCcceeeeee
Confidence 43220 0 011112 23688999999888888888999999999999987 788999999999998
Q ss_pred ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC---------eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ---------VCALLWNKNERELLSSHGFTQNQLTLWKYPSM 393 (458)
Q Consensus 323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~ 393 (458)
--...+.++ +|+ .||++|+||+++++++..+..-.. -.-.+..-+...+++ | ....+.+|.+++.
T Consensus 164 ~R~~~~qil-sG~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvC--G-gGp~lslwhLrss 237 (325)
T KOG0649|consen 164 GRNANGQIL-SGA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVC--G-GGPKLSLWHLRSS 237 (325)
T ss_pred ecccCccee-ecC--CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEe--c-CCCceeEEeccCC
Confidence 755444444 554 999999999999999988853211 112344456667776 3 2457999999999
Q ss_pred eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 394 VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 394 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
+....+. -..+|..+.|..| .+++++..+.|.-|.+.+.
T Consensus 238 e~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 238 ESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred CceEEEe-cccceeEeeeecc--eEEEeccccceeeeeeccE
Confidence 9888775 4567788888544 6788888888999988654
No 179
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=1.8e-17 Score=146.54 Aligned_cols=228 Identities=19% Similarity=0.328 Sum_probs=173.2
Q ss_pred eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCceeeEEecC--CCcccEE
Q 012679 154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTANRQLRTLRG--GHRSRVG 230 (458)
Q Consensus 154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~~~~~~~~~--~~~~~v~ 230 (458)
++++|.-|.|+|.|+.++++ ...+.+|...|..+.+.|+ .+++++++.|..|++|++++..++..+.+ +|...|.
T Consensus 108 la~~G~~GvIrVid~~~~~~--~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQC--SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred EEeecceeEEEEEecchhhh--ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 66777789999999999987 6778899999999999995 57899999999999999999999988864 6999999
Q ss_pred EEEeC--CCeEEEEeCCCcEEEEEccCCCe---e------------------------EEEEcccccceEeEEEcCCCCE
Q 012679 231 SLAWN--NHILTTGGMDGLIINNDVRVRDH---I------------------------VETYRGHNQEVCGLKWSASGQQ 281 (458)
Q Consensus 231 ~l~~~--~~~l~sg~~dg~i~vwd~~~~~~---~------------------------~~~~~~h~~~v~~l~~spd~~~ 281 (458)
++.|+ +.+|++++.|..|++|++...+. + ..+..-|...|-|+.|- |++
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ 263 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF 263 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence 99995 78999999999999999984320 0 01223466777777774 688
Q ss_pred EEEEECCCcEEEEeCCCCCCC--------CcceeeeeecccccceeEE--EecCCCCcEEEEeCCCCCCeEEEEECCCCC
Q 012679 282 LASGGNDNLLHIWDRSMASSN--------SVTQWLHRLEEHTSAVKAI--AWCPFQSNLLATGGGGGDRCIKFWNTHTGA 351 (458)
Q Consensus 282 l~sg~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~h~~~v~~l--~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~ 351 (458)
+++-+-++.|..|........ .....+..+.-....|.-+ +|.|.+. +||.|. ..|.|.+||++..+
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gn--q~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGN--QSGKVYVWDLDNNE 340 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhcc--CCCcEEEEECCCCC
Confidence 999999999999987221111 1111233344444455544 5567544 455554 89999999999876
Q ss_pred eeE--EE---eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679 352 CLN--SV---DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 352 ~~~--~~---~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~ 390 (458)
+.. ++ ..+..|...+|+.++..|+..+ +|+.|.-||.
T Consensus 341 p~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc--dd~~Vwrwdr 382 (385)
T KOG1034|consen 341 PPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC--DDGTVWRWDR 382 (385)
T ss_pred CccCceEEeccccceeeeeeecccCcEEEEEe--CCCcEEEEEe
Confidence 532 22 2356699999999999999966 8999999985
No 180
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=8.1e-18 Score=157.71 Aligned_cols=247 Identities=17% Similarity=0.300 Sum_probs=177.8
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEeCCCcEEEE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDGLIINN 251 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~~dg~i~vw 251 (458)
...+.+|.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+.+..+..+|.+.|.++.| ++.++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 45678999999999999999999999999999999999999999999899999999999 57899999999999999
Q ss_pred EccCC---------CeeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcce----eeeeecccccc
Q 012679 252 DVRVR---------DHIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQ----WLHRLEEHTSA 317 (458)
Q Consensus 252 d~~~~---------~~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~----~~~~~~~h~~~ 317 (458)
|+... ......+..|...|..|+-.|++ +.+.++++||+|+-+|++....-.... .+..+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99852 22244566899999999999988 789999999999999999754321111 01112222345
Q ss_pred eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe-eEE-----EeCCCCeEEE-EEcCCCCeEEEEecCCCCcEEEEeC
Q 012679 318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-LNS-----VDTGSQVCAL-LWNKNERELLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 318 v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-~~~-----~~~~~~v~~~-~~s~~~~~l~~~~g~~d~~i~iwd~ 390 (458)
.+++..+|...++|++|+ .|-..++||.+...+ ... ........++ -|+|.+-.. .+|.
T Consensus 203 lk~ltisp~rp~~laVGg--sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn------~~gn------ 268 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGG--SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN------SQGN------ 268 (758)
T ss_pred eeeeeecCCCCceEEecC--CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC------cccc------
Confidence 689999999999999987 999999999643211 110 0000011111 122221100 0010
Q ss_pred CCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444 (458)
Q Consensus 391 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~ 444 (458)
+......++.+.|+|+|.-|+..-....|+++|+..++.......+
T Consensus 269 --------~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 269 --------LDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred --------cccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecCc
Confidence 0001123578899999988777777779999999987766554433
No 181
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=2.3e-16 Score=156.05 Aligned_cols=230 Identities=18% Similarity=0.184 Sum_probs=161.9
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEeCCCcee--eEEecCCCcccEEEEEe-
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---CQVQLWDSTANRQ--LRTLRGGHRSRVGSLAW- 234 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~- 234 (458)
..|++||...... ..+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+ | ...++|
T Consensus 184 ~~i~i~d~dg~~~---~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~---~~~~~wS 256 (429)
T PRK01742 184 YEVRVADYDGFNQ---FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-H---NGAPAFS 256 (429)
T ss_pred EEEEEECCCCCCc---eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-c---cCceeEC
Confidence 5899999876553 3445667789999999999999988654 3699999988754 322322 3 335677
Q ss_pred -CCCeEEEE-eCCCcEEEE--EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCCCCCcceeee
Q 012679 235 -NNHILTTG-GMDGLIINN--DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMASSNSVTQWLH 309 (458)
Q Consensus 235 -~~~~l~sg-~~dg~i~vw--d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~ 309 (458)
+++.|+.+ +.+|.+.+| |+.++. ...+..+...+....|+|||+.|+.++ .+|...||++...... ..
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-----~~ 329 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-----AS 329 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----eE
Confidence 56777765 468876555 554443 455666777788999999999877665 5788888887553321 11
Q ss_pred eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679 310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 310 ~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd 389 (458)
.+ .+.. ...+|+|++..+++++ .++ +.+||+.+++....... .......|+|+++.++.+. .++.+.+|.
T Consensus 330 ~l-~~~~--~~~~~SpDG~~ia~~~---~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s--~~g~~~~l~ 399 (429)
T PRK01742 330 LV-GGRG--YSAQISADGKTLVMIN---GDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSS--TQGLGKVLQ 399 (429)
T ss_pred Ee-cCCC--CCccCCCCCCEEEEEc---CCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEE--cCCCceEEE
Confidence 22 3333 4578999988776654 344 56699999876533222 2345678999999999864 577777776
Q ss_pred C--CCceeeEEEeCCCCcEEEEEEcCC
Q 012679 390 Y--PSMVKMAELSGHTSRVLFMAQSPD 414 (458)
Q Consensus 390 ~--~~~~~~~~~~~h~~~V~~l~~spd 414 (458)
+ .++..+..+.+|.+.+...+|+|-
T Consensus 400 ~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 400 LVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEECCCCceEEccCCCCCCCCcccCCC
Confidence 5 357778888888888999999984
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.3e-16 Score=141.80 Aligned_cols=228 Identities=18% Similarity=0.292 Sum_probs=172.9
Q ss_pred CEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEeCCCcEEEEEccCCCeeE-EEEcccc-cc
Q 012679 196 RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDGLIINNDVRVRDHIV-ETYRGHN-QE 269 (458)
Q Consensus 196 ~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~-~~ 269 (458)
..+|++..+|.|++||..+++.+..+.+ ++..+..+.| .++.+.+++.||+|++||+|...... ....++. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 5789999999999999999999999998 8888888888 36899999999999999999876432 3334444 46
Q ss_pred eEeEEEcCCCCEEEEEEC----CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEE
Q 012679 270 VCGLKWSASGQQLASGGN----DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFW 345 (458)
Q Consensus 270 v~~l~~spd~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lw 345 (458)
..+++....++.+++|+. |-.|.+||++..+.. ...-...|...|+++.|+|..+++|++|+ .||.|.++
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~----l~~~~eSH~DDVT~lrFHP~~pnlLlSGS--vDGLvnlf 193 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL----LRQLNESHNDDVTQLRFHPSDPNLLLSGS--VDGLVNLF 193 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccch----hhhhhhhccCcceeEEecCCCCCeEEeec--ccceEEee
Confidence 777877778888888864 678999999987652 12234679999999999999999999987 99999999
Q ss_pred ECCCC----CeeEEEeCCCCeEEEEEcCCC--CeEEEEecCCCCcEEEEeCCCceeeEEEeCCC------------CcEE
Q 012679 346 NTHTG----ACLNSVDTGSQVCALLWNKNE--RELLSSHGFTQNQLTLWKYPSMVKMAELSGHT------------SRVL 407 (458)
Q Consensus 346 d~~~~----~~~~~~~~~~~v~~~~~s~~~--~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~------------~~V~ 407 (458)
|+... ..+.++.+.+.|..+.|..++ +....+ ......+|+++.+.....+.... ..+.
T Consensus 194 D~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT---H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 194 DTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT---HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred ecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE---ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 99764 356677888999999999888 544443 47899999998877655443221 1111
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEecC
Q 012679 408 FMAQSPDGCTVASAAA-DETLRFWNVF 433 (458)
Q Consensus 408 ~l~~spdg~~l~s~s~-Dg~i~iW~~~ 433 (458)
..-...++.+++.++. -+...++-+.
T Consensus 271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 271 NEHSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred ecccCCCcceEEEeccccCceeEEEee
Confidence 1111225556666665 5677777655
No 183
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=8.4e-17 Score=150.57 Aligned_cols=260 Identities=18% Similarity=0.305 Sum_probs=187.8
Q ss_pred ceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-------CCCEEEEEecCCeEEEEeCCCce
Q 012679 145 NLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-------DGRHIAIGLNNCQVQLWDSTANR 216 (458)
Q Consensus 145 ~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-------~g~~la~g~~dg~v~iwd~~~~~ 216 (458)
.+++|.. ..++.++.|..+.+|.-.+.....+..+.. ..-.+.+-.-+ ....|+.++.||.+.|.+ ..++
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~-df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~r 95 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPD-DFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSAR 95 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhCCc-ccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccch
Confidence 3788877 568888888888777644333222332221 11111111111 235789999999999987 4566
Q ss_pred eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE
Q 012679 217 QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294 (458)
Q Consensus 217 ~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw 294 (458)
..+.+.. |.+.+.+-.|+ |.-|++++.||.|++|.-... +..++.....+|.|++|.|+.+.++.+- .+.+.|=
T Consensus 96 VE~sv~A-H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IK 171 (737)
T KOG1524|consen 96 VERSISA-HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIK 171 (737)
T ss_pred hhhhhhh-hhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEe
Confidence 6666666 99999999994 789999999999999985432 2334445677899999999988776654 3567776
Q ss_pred eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeE
Q 012679 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL 374 (458)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 374 (458)
.+..... +.+.+.|.+-|.++.|++ ...++++|| .|-..++||.........-.+..+|++++|+|+..++
T Consensus 172 pL~~n~k------~i~WkAHDGiiL~~~W~~-~s~lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~ 242 (737)
T KOG1524|consen 172 PLAANSK------IIRWRAHDGLVLSLSWST-QSNIIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYL 242 (737)
T ss_pred ecccccc------eeEEeccCcEEEEeecCc-cccceeecC--CceeEEeecccCcccccCChhccceeeeeecccccee
Confidence 6655544 667789999999999999 588999987 9999999998766666666778899999999994333
Q ss_pred EEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
+- +-+++++ -....+.|..++||+||..++.|+..|.|.+=.+-+
T Consensus 243 v~----S~nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie 287 (737)
T KOG1524|consen 243 LW----SYNTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIE 287 (737)
T ss_pred ee----eeeeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEeeeeh
Confidence 32 2233331 123457899999999999999999999887655443
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=2.3e-16 Score=155.63 Aligned_cols=252 Identities=17% Similarity=0.268 Sum_probs=182.2
Q ss_pred CCCceeeeCCCCCCccccceeec---cCCCeEEEEcCCEEEEEECCCCCeeeE----EEecCCCCCEEEEEEcCCC--CE
Q 012679 127 QSSERTLDAPDLVDDYYLNLLDW---GSSNVLAIALGSTVYLWDASDGTTSEL----VTVDDENGPVTSVNWAPDG--RH 197 (458)
Q Consensus 127 ~~~~~~l~~~~~~~d~~~~~~~~---~~~~~la~~~d~~v~iwd~~~~~~~~~----~~~~~h~~~V~~v~~s~~g--~~ 197 (458)
..|+.++..+.. +.++.+ +++.++.|+.+|.|.+||+..+..... .....|..+|+.+.|..+. .-
T Consensus 233 ~~Pe~~~~~~s~-----v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~ 307 (555)
T KOG1587|consen 233 NTPELVLESPSE-----VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTE 307 (555)
T ss_pred CCceEEEecCCc-----eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCc
Confidence 466777776543 344444 457788888899999999987654211 2234689999999998744 44
Q ss_pred EEEEecCCeEEEEeCCCceeeE------Eec-----CCCcccEEEEEe---CCCeEEEEeCCCcEEEEE---ccCCC---
Q 012679 198 IAIGLNNCQVQLWDSTANRQLR------TLR-----GGHRSRVGSLAW---NNHILTTGGMDGLIINND---VRVRD--- 257 (458)
Q Consensus 198 la~g~~dg~v~iwd~~~~~~~~------~~~-----~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd---~~~~~--- 257 (458)
+++++.||.|..|+++.-.... ... ......+++++| ++..++.|+.+|.|..-. .+...
T Consensus 308 f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~ 387 (555)
T KOG1587|consen 308 FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVS 387 (555)
T ss_pred eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccc
Confidence 9999999999999875432210 011 013356788888 578999999999997733 22222
Q ss_pred -eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679 258 -HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG 336 (458)
Q Consensus 258 -~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g 336 (458)
.....+..|.+.|.++.++|=+..++..+.|-+|+||....... ++..+..+...|.+++|||....+++++.
T Consensus 388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~-----Pl~~~~~~~~~v~~vaWSptrpavF~~~d- 461 (555)
T KOG1587|consen 388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS-----PLLSLDSSPDYVTDVAWSPTRPAVFATVD- 461 (555)
T ss_pred ccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCC-----cchhhhhccceeeeeEEcCcCceEEEEEc-
Confidence 12335567899999999999666555444599999999773222 26777788888999999999999999987
Q ss_pred CCCCeEEEEECCCC--CeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679 337 GGDRCIKFWNTHTG--ACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 337 ~~d~~i~lwd~~~~--~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
.||.|.+||+... .++.+... ....+.+.|++.|+.+++ |...|.+.+|++..
T Consensus 462 -~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav--Gd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 462 -GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV--GDANGTTHILKLSE 517 (555)
T ss_pred -CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEE--ecCCCcEEEEEcCc
Confidence 8999999999754 34444433 344677788888999998 88999999999853
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.2e-14 Score=130.75 Aligned_cols=273 Identities=15% Similarity=0.200 Sum_probs=200.5
Q ss_pred cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC--eEEEEeCCCceeeEE
Q 012679 144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC--QVQLWDSTANRQLRT 220 (458)
Q Consensus 144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg--~v~iwd~~~~~~~~~ 220 (458)
++.+.|+. ..++++|.....++|+.+.-.. ..........|..+-|+. .++|..+.+. .+++++++....+..
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred eeeeeeccceeEEEccCCCceeEEecCchHH--hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEE
Confidence 44455776 4588888888888998775432 222233344566666764 4566655443 599999998888888
Q ss_pred ecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEE---cccccceEeEEEcCCCCEEEEEE--CCCcEEEEe
Q 012679 221 LRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETY---RGHNQEVCGLKWSASGQQLASGG--NDNLLHIWD 295 (458)
Q Consensus 221 ~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~~h~~~v~~l~~spd~~~l~sg~--~dg~i~iwd 295 (458)
+. ....|.++..|.+.|+++-.+. |+|||++.... +.++ ..+...++++.+++.+.+||.-+ ..|.|.|||
T Consensus 84 ~~--fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mkl-LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 84 IF--FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKL-LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred Ee--cCCceEEEEEccceEEEEEccc-EEEEeccccee-ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 87 7789999999998888887765 99999997764 3333 34667788888888888998643 468999999
Q ss_pred CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe-EEEEECCCCCeeEEEeCC---CCeEEEEEcCCC
Q 012679 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC-IKFWNTHTGACLNSVDTG---SQVCALLWNKNE 371 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~-i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~ 371 (458)
..+.+. ...+..|.+.+.+++|+++ +.++|+++ ..|+ ||++.+.+|+.+..+..+ ..|.+++|++++
T Consensus 160 ~~nl~~------v~~I~aH~~~lAalafs~~-G~llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 160 TINLQP------VNTINAHKGPLAALAFSPD-GTLLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred ccccee------eeEEEecCCceeEEEECCC-CCEEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 988766 7888999999999999996 67788876 6665 899999999999999765 468999999999
Q ss_pred CeEEEEecCCCCcEEEEeCCCce-------------------------------------eeEEEeCCCC---cEEEEEE
Q 012679 372 RELLSSHGFTQNQLTLWKYPSMV-------------------------------------KMAELSGHTS---RVLFMAQ 411 (458)
Q Consensus 372 ~~l~~~~g~~d~~i~iwd~~~~~-------------------------------------~~~~~~~h~~---~V~~l~~ 411 (458)
.+|.+++ +.++|.||.+..-. ..+..+...+ .+..+.-
T Consensus 231 ~~L~~sS--~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~ 308 (391)
T KOG2110|consen 231 QFLAASS--NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSS 308 (391)
T ss_pred CeEEEec--CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeec
Confidence 9998854 78999999874211 0111111111 1222222
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCC
Q 012679 412 SPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 412 spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
.+....+..++.||.++.|.+...
T Consensus 309 ~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 309 IQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred cCCCCEEEEEEcCCeEEEEEcCCC
Confidence 246778889999999999998653
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=1.5e-17 Score=162.86 Aligned_cols=281 Identities=16% Similarity=0.230 Sum_probs=219.2
Q ss_pred CCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679 137 DLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR 216 (458)
Q Consensus 137 ~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~ 216 (458)
+..+-.|+..+|-++.++++++.|..|+||..+++.+ +..+.||.+.|+.++.+.+..++|+++.|..|++|.+..+.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC--LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhh--hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence 4445567777777788999999999999999888877 88999999999999999999999999999999999999999
Q ss_pred eeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeE--EEEc-ccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 217 QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIV--ETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 217 ~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
.+..+.+ |.+.|++++|.+.. +.+.||++++||.+-..... ..+. ....-+.++.|..++.-+++|+.|+.-..
T Consensus 266 pvsvLrg-htgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n 342 (1113)
T KOG0644|consen 266 PVSVLRG-HTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARN 342 (1113)
T ss_pred hHHHHhc-cccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccccc
Confidence 9999998 99999999998755 78899999999998221100 0011 22356788888889999999999999988
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCC
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNER 372 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~ 372 (458)
|.+..... +...+.-+..+.+...+.+++- .+..+.+|++.+|..++.... ...+..+.++|-..
T Consensus 343 ~e~~~l~~------------~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 343 HEFEQLAW------------RSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred chhhHhhh------------hccceEEEeccccccccceeee--eeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 88654332 2222222333323334444443 678899999999988877654 45688999999988
Q ss_pred eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
.++...| .||...|||+-.+.++..+....+.+..-.||+||..++....-|.+.|.....++.
T Consensus 409 ri~msag-~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 409 RIAMSAG-YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred Hhhhhcc-CCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 8887756 699999999999888776543345566779999999999888889999988765443
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.6e-15 Score=147.70 Aligned_cols=280 Identities=17% Similarity=0.253 Sum_probs=208.5
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCC---CEEEEEecCCeEEEEeCCCceeeEEecCCCccc
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDG---RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR 228 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g---~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~ 228 (458)
...+.+..+..|.||...+|.+ +..+++|..+++.+.+.|.. .++.+++.+|.|++||...+..++++.. ..+
T Consensus 28 ~k~l~~~~~~~V~VyS~~Tg~~--i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~--~~~ 103 (792)
T KOG1963|consen 28 AKFLFLCTGNFVKVYSTATGEC--ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN--NLP 103 (792)
T ss_pred CcEEEEeeCCEEEEEecchHhh--hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec--CCc
Confidence 6788889999999999999988 56889999999999998844 4778999999999999998888877653 111
Q ss_pred EEEEEe-----------------------------------------------------------C-CCeEEEEeCCCcE
Q 012679 229 VGSLAW-----------------------------------------------------------N-NHILTTGGMDGLI 248 (458)
Q Consensus 229 v~~l~~-----------------------------------------------------------~-~~~l~sg~~dg~i 248 (458)
+..+.+ + ...+.....+..+
T Consensus 104 v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~ 183 (792)
T KOG1963|consen 104 VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKI 183 (792)
T ss_pred eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeE
Confidence 111111 0 0011111222344
Q ss_pred EEEEccCCCeeE---EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679 249 INNDVRVRDHIV---ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325 (458)
Q Consensus 249 ~vwd~~~~~~~~---~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 325 (458)
.+|.+....... ..-..|.-.+++.++||+++++|+|..||.|.+|.--..... ..-.+.+.-|...|.+++|++
T Consensus 184 ~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~--~~t~t~lHWH~~~V~~L~fS~ 261 (792)
T KOG1963|consen 184 HIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD--SETCTLLHWHHDEVNSLSFSS 261 (792)
T ss_pred EEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc--cccceEEEecccccceeEEec
Confidence 555555432111 111246667899999999999999999999999974431111 111466778999999999999
Q ss_pred CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC---
Q 012679 326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH--- 402 (458)
Q Consensus 326 ~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h--- 402 (458)
+|.+++ +|| ..+.+.+|.+.+++...-...+++|..+.++|++......+ .|++|.+....+++...++.|-
T Consensus 262 ~G~~Ll-SGG--~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~--~DNqI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 262 DGAYLL-SGG--REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVL--EDNQIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred CCceEe-ecc--cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEe--cCceEEEEeccchhhhhhccCccCC
Confidence 877665 454 89999999999999555556789999999999999998876 6999999999887766555432
Q ss_pred --------CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 403 --------TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 403 --------~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
.+-.+.++++|.-+.++-.+.-|.|.+||+.+...+.+..
T Consensus 337 ~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 337 TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred CccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 2346788999977788889999999999999888776543
No 188
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=8.7e-17 Score=153.14 Aligned_cols=226 Identities=17% Similarity=0.324 Sum_probs=165.5
Q ss_pred EcCCEEEEEECCCC-Ceee--EEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCce-------eeEEecCCCc
Q 012679 158 ALGSTVYLWDASDG-TTSE--LVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANR-------QLRTLRGGHR 226 (458)
Q Consensus 158 ~~d~~v~iwd~~~~-~~~~--~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~-------~~~~~~~~~~ 226 (458)
+.+|.|-||++... ++.. +-.+. ....|+.+.|.| |...||+++.||.|+||.+..+. ....+.. |.
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~-h~ 677 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI-HG 677 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec-cc
Confidence 45789999998752 2210 11121 256799999999 88899999999999999987553 3344555 99
Q ss_pred ccEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCC
Q 012679 227 SRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303 (458)
Q Consensus 227 ~~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~ 303 (458)
..|+++.|++ +.|++++.|.+|.+||+++... ...+.+|++.|.+++|||||+.+|+.+.||+|++|+.+.....
T Consensus 678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p- 755 (1012)
T KOG1445|consen 678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP- 755 (1012)
T ss_pred ceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc-
Confidence 9999999985 8999999999999999997764 5778999999999999999999999999999999998887642
Q ss_pred cceeeeeeccc-ccceeEEEecCCCCcEEEEeCC-CCCCeEEEEECCCC--CeeEEE--eCCCCeEEEEEcCCCCeEEEE
Q 012679 304 VTQWLHRLEEH-TSAVKAIAWCPFQSNLLATGGG-GGDRCIKFWNTHTG--ACLNSV--DTGSQVCALLWNKNERELLSS 377 (458)
Q Consensus 304 ~~~~~~~~~~h-~~~v~~l~~~p~~~~ll~s~~g-~~d~~i~lwd~~~~--~~~~~~--~~~~~v~~~~~s~~~~~l~~~ 377 (458)
+..-.+. ...--.|.|.-++..++++|-. ...+.|.+||..+- ..+.+. +...++.--.+.+|...++.+
T Consensus 756 ----v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lflt 831 (1012)
T KOG1445|consen 756 ----VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLT 831 (1012)
T ss_pred ----cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEe
Confidence 2221111 1122356777788888888731 23467889998763 344333 333333344567777777765
Q ss_pred ecCCCCcEEEEeCCC
Q 012679 378 HGFTQNQLTLWKYPS 392 (458)
Q Consensus 378 ~g~~d~~i~iwd~~~ 392 (458)
|-.|..|.+|.+-.
T Consensus 832 -GKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 832 -GKGDRFVNMYEVIY 845 (1012)
T ss_pred -cCCCceEEEEEecC
Confidence 77888999998744
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=1.9e-14 Score=129.47 Aligned_cols=238 Identities=12% Similarity=0.205 Sum_probs=179.2
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCC--cEEEEEccCCCeeE
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDG--LIINNDVRVRDHIV 260 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg--~i~vwd~~~~~~~~ 260 (458)
...+..+.|..+...|.+|+.|| .++|..+.......... ....|.-+-|+..+++..+.+. .+++++++....+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~-~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDT-EGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccC-CCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence 34577778999999999999997 68888766554333222 4456777778888888777654 48888887655432
Q ss_pred EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec---ccccceeEEEecCCCCcEEEEeCCC
Q 012679 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE---EHTSAVKAIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~ll~s~~g~ 337 (458)
... ...+|.++.++ -+.|+++-.+ .|+|||++..+. ++++. .+...+.+++.++.+.++.+-+ ..
T Consensus 83 e~~--fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~Mkl------LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~-s~ 150 (391)
T KOG2110|consen 83 EIF--FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKL------LHTIETTPPNPKGLCALSPNNANCYLAYPG-ST 150 (391)
T ss_pred EEe--cCCceEEEEEc--cceEEEEEcc-cEEEEeccccee------ehhhhccCCCccceEeeccCCCCceEEecC-CC
Confidence 222 35678888875 4456666654 499999999877 55554 3445566666666544555443 34
Q ss_pred CCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCC-cEEEEeCCCceeeEEEeCCC--CcEEEEEEcC
Q 012679 338 GDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQN-QLTLWKYPSMVKMAELSGHT--SRVLFMAQSP 413 (458)
Q Consensus 338 ~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~-~i~iwd~~~~~~~~~~~~h~--~~V~~l~~sp 413 (458)
..|.|.+||+.+-+.+..+. |.+.+-+++|+++|..|++++ +.| .|+||.+++++++.+|+.-. ..|.+++|+|
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 67899999999999998886 467899999999999999964 566 58999999999999997544 4589999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCC
Q 012679 414 DGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 414 dg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
++++|++.|..++|.+|++....
T Consensus 229 ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCCeEEEecCCCeEEEEEecccc
Confidence 99999999999999999997665
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=8.6e-18 Score=164.47 Aligned_cols=249 Identities=19% Similarity=0.286 Sum_probs=186.8
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEc
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDV 253 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~ 253 (458)
+..+.+|...|+|+.|...|.++++|+.|..|+||..+++.++....+ |.+.|+.++.+ +.++++++.|..|++|.+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-CccccchhccchhhhhhhhcccCceEEEEec
Confidence 345668999999999999999999999999999999999999999998 99999999984 678899999999999999
Q ss_pred cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333 (458)
Q Consensus 254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s 333 (458)
..+. ++..+.+|++.|++++|+|-. +.+.||++++||.+-........+. .+. ....+.++.|...+ .-+++
T Consensus 262 ~~~~-pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~-~~~-~~~~~~s~~~~~~~-~~f~T 333 (1113)
T KOG0644|consen 262 PDGA-PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPL-KFT-EKDLVDSILFENNG-DRFLT 333 (1113)
T ss_pred CCCc-hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCC-Ccc-cccceeeeeccccc-ccccc
Confidence 9776 478899999999999999954 7789999999998832221111111 111 22455666676643 33445
Q ss_pred eCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCC-CeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEc
Q 012679 334 GGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE-RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS 412 (458)
Q Consensus 334 ~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~s 412 (458)
++ .|+.-..|.+.-..+.. ..+.-+..+.+. .+.++ .-.+-.+.+|++.++...+.+.+|...+.-|.++
T Consensus 334 gs--~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~--ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 334 GS--RDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVT--ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred cc--CCcccccchhhHhhhhc-----cceEEEecccccccccee--eeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence 44 88887777654321110 001111111122 23333 2356788999999999999999999999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 413 P-DGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 413 p-dg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
| +.....+++.||...|||+..+.++....
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 9 55566789999999999999988776655
No 191
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.3e-14 Score=143.24 Aligned_cols=236 Identities=15% Similarity=0.100 Sum_probs=159.8
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEeCCCceeeEEecCCCcccEEEEEe--CC
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN---NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NN 236 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~ 236 (458)
.|++||.+......+ ..+...+.+.+|+|||+.|+..+. +..|.+||+.+++...... ....+..+.| ++
T Consensus 180 ~l~~~d~dg~~~~~l---t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~--~~~~~~~~~~SPDG 254 (429)
T PRK03629 180 ELRVSDYDGYNQFVV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDG 254 (429)
T ss_pred eEEEEcCCCCCCEEe---ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC--CCCCcCCeEECCCC
Confidence 799999887664333 335668999999999999987643 3479999998876433222 2233445677 56
Q ss_pred CeEEEE-eCCC--cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC-Cc--EEEEeCCCCCCCCcceeeee
Q 012679 237 HILTTG-GMDG--LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND-NL--LHIWDRSMASSNSVTQWLHR 310 (458)
Q Consensus 237 ~~l~sg-~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d-g~--i~iwd~~~~~~~~~~~~~~~ 310 (458)
..|+.. +.+| .|++||+.++.. ..+..+...+....|+|||+.|+..+.+ +. |+++|+..+. ...
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-------~~~ 325 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-------PQR 325 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-------eEE
Confidence 666654 5455 588899987653 3444445567889999999999877764 44 4444665443 233
Q ss_pred ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEe
Q 012679 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT-QNQLTLWK 389 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd 389 (458)
+..+........|+|++..+++++.......|.+||+.+++... +..........|+|+|+.++.++... ...+.+++
T Consensus 326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 33344456678999999888877642233568999998887543 33333345788999999999875321 12367777
Q ss_pred CCCceeeEEEeCCCCcEEEEEEcC
Q 012679 390 YPSMVKMAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 390 ~~~~~~~~~~~~h~~~V~~l~~sp 413 (458)
+ ++.....+.+|.+.+...+|+|
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCC
Confidence 7 4555566778888899999987
No 192
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.2e-16 Score=148.86 Aligned_cols=251 Identities=21% Similarity=0.269 Sum_probs=177.5
Q ss_pred ccccceeeccC--CCeEEEEcCCEEEEEECC------CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC
Q 012679 141 DYYLNLLDWGS--SNVLAIALGSTVYLWDAS------DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212 (458)
Q Consensus 141 d~~~~~~~~~~--~~~la~~~d~~v~iwd~~------~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~ 212 (458)
+-++..+.+++ ..+++++.+|.|.+|+++ ...+.++.++.+|.++|.|++..+++.++.+|+.||+|+.|++
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 33566666665 569999999999999993 3456789999999999999999999999999999999999965
Q ss_pred CCc---------eee-EEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC-
Q 012679 213 TAN---------RQL-RTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG- 279 (458)
Q Consensus 213 ~~~---------~~~-~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~- 279 (458)
... ..+ ..+. +|...|+.++++ ...|++++.||+++.|+......+........+.-..+.+-...
T Consensus 374 p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~ 452 (577)
T KOG0642|consen 374 PPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRP 452 (577)
T ss_pred CCCCCcccccCcchhcccee-ccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchh
Confidence 421 122 3344 499999999995 57899999999999999876554211111112223345543322
Q ss_pred CEEEEEECCCcEEEEeCCCCCCCCcceeeeeec-------ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe
Q 012679 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-------EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC 352 (458)
Q Consensus 280 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~ 352 (458)
.+.++...-+.--+++...... +..+. .....+..+.++|.. .+.+++. .|+.|+++|..++++
T Consensus 453 a~~~~s~~~~~~~~~~~ev~s~------~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~h--ed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 453 AHSLASFRFGYTSIDDMEVVSD------LLIFESSASPGPRRYPQINKVVSHPTA-DITFTAH--EDRSIRFFDNKTGKI 523 (577)
T ss_pred Hhhhhhcccccccchhhhhhhh------eeeccccCCCcccccCccceEEecCCC-CeeEecc--cCCceeccccccccc
Confidence 1222222222222333333222 11111 112356778899965 5555555 999999999999998
Q ss_pred eEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC
Q 012679 353 LNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT 403 (458)
Q Consensus 353 ~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~ 403 (458)
+.... +...++++++.|+|.++++ |..|+.+++|.+.....+.....|.
T Consensus 524 l~s~~a~~~svtslai~~ng~~l~s--~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 524 LHSMVAHKDSVTSLAIDPNGPYLMS--GSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred chheeeccceecceeecCCCceEEe--ecCCceeehhhccchheeecccccc
Confidence 87764 4567999999999999999 7799999999998877777766664
No 193
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.6e-14 Score=129.56 Aligned_cols=281 Identities=17% Similarity=0.285 Sum_probs=183.2
Q ss_pred ccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCc--
Q 012679 141 DYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTAN-- 215 (458)
Q Consensus 141 d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~-- 215 (458)
...+.-++|++ .-+++++.|..|++||........+... -...|+|++|-| .+..|++|+..| |.||.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~--sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSV--SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecch--hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 34577799998 3477788899999999877433222222 256799999999 456788888775 999975422
Q ss_pred --ee--------eEEecCCCcccEEEEEeC--CCeEEEEeC-CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE
Q 012679 216 --RQ--------LRTLRGGHRSRVGSLAWN--NHILTTGGM-DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL 282 (458)
Q Consensus 216 --~~--------~~~~~~~~~~~v~~l~~~--~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l 282 (458)
.. ...++......|+++.|+ +..+++++. |..|.|||+.++...- ......+.+.-+.||||+.+|
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-L~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-LIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc-ccccCCCceeeEEEcCCCCEE
Confidence 11 111222223789999994 678887765 6789999999887532 222345678889999999999
Q ss_pred EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC--CCC--------e
Q 012679 283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH--TGA--------C 352 (458)
Q Consensus 283 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~--~~~--------~ 352 (458)
+.++-|+..++|+....-.. .. ..-..+.|...+|+|.|..+|.+++ ....|+-.... .+. .
T Consensus 254 faAt~davfrlw~e~q~wt~-----er-w~lgsgrvqtacWspcGsfLLf~~s--gsp~lysl~f~~~~~~~~~~~~~k~ 325 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTK-----ER-WILGSGRVQTACWSPCGSFLLFACS--GSPRLYSLTFDGEDSVFLRPQSIKR 325 (445)
T ss_pred EEecccceeeeehhccccee-----cc-eeccCCceeeeeecCCCCEEEEEEc--CCceEEEEeecCCCccccCccccee
Confidence 99999999999965443221 11 1123458999999999999999876 23233222111 110 0
Q ss_pred ---eEEE-----e-----CCCCeEEEEEcCCCCeEEEEecCCC------CcEEEEeCCCceeeEEE-eCC--CCcEEEEE
Q 012679 353 ---LNSV-----D-----TGSQVCALLWNKNERELLSSHGFTQ------NQLTLWKYPSMVKMAEL-SGH--TSRVLFMA 410 (458)
Q Consensus 353 ---~~~~-----~-----~~~~v~~~~~s~~~~~l~~~~g~~d------~~i~iwd~~~~~~~~~~-~~h--~~~V~~l~ 410 (458)
+..+ . ..++..+++|+|.|.++++..-..+ ..|.+||....-.+.-. -+- ......+.
T Consensus 326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~Is 405 (445)
T KOG2139|consen 326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYIS 405 (445)
T ss_pred eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEE
Confidence 0000 1 2456889999999999998653222 34666776554333221 111 11244567
Q ss_pred EcC---CCCEEEEEeCCCcEEEEecC
Q 012679 411 QSP---DGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 411 ~sp---dg~~l~s~s~Dg~i~iW~~~ 433 (458)
|+| +|.+|..+=.-|.+.-|++.
T Consensus 406 F~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 406 FGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred eeecccCCcEEEEEeccCceEeeeeE
Confidence 766 67777777778888888764
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.6e-14 Score=143.24 Aligned_cols=285 Identities=15% Similarity=0.227 Sum_probs=203.1
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEE---ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC--c--eeeEEecC
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVT---VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA--N--RQLRTLRG 223 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~---~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~--~--~~~~~~~~ 223 (458)
...+..+..+..+++|+..++. ..... -..|...++|.++||+++++|+|..||.|.+|.--. + .....+.=
T Consensus 171 ~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 171 SGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred CceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 3678888889999999998755 22221 125677799999999999999999999999995322 1 22334444
Q ss_pred CCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 224 GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 224 ~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
|...|.+++| +|.+|++|+..|.+.+|.+.++. .+.+..-.++|..+.++||+.+.+....|+.|.+-...+...
T Consensus 250 -H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 250 -HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred -cccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 8889999999 68999999999999999999887 355666788999999999999999999999999998755443
Q ss_pred CCcceeeee-----ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC------------CCCeEE
Q 012679 302 NSVTQWLHR-----LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT------------GSQVCA 364 (458)
Q Consensus 302 ~~~~~~~~~-----~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~------------~~~v~~ 364 (458)
.....-+.. -....+-.+.++++|..+.++.. + ..+.|.+||+.+...+..+.. .-.+++
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln-~--~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita 403 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN-G--HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA 403 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCCCceeec-C--CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence 211110110 11124456778899954444443 3 899999999998876655521 123677
Q ss_pred EEEcCCCCeEEEEec------CC--CCcEEEEeCCCceeeEEE-----eCCCCcEEEEEEcC--CCCEEEEEeCCCcEEE
Q 012679 365 LLWNKNERELLSSHG------FT--QNQLTLWKYPSMVKMAEL-----SGHTSRVLFMAQSP--DGCTVASAAADETLRF 429 (458)
Q Consensus 365 ~~~s~~~~~l~~~~g------~~--d~~i~iwd~~~~~~~~~~-----~~h~~~V~~l~~sp--dg~~l~s~s~Dg~i~i 429 (458)
++.+..|.++++.-. .. ...+++|-+.....-..+ ..|...+...++.+ .....++++.||.++|
T Consensus 404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~Ki 483 (792)
T KOG1963|consen 404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKI 483 (792)
T ss_pred ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEE
Confidence 777888888877432 12 346788987654432222 46776655555543 3337899999999999
Q ss_pred EecCCCCcccccC
Q 012679 430 WNVFGAPQVISKS 442 (458)
Q Consensus 430 W~~~~~~~~~~~~ 442 (458)
|-+.....+.+..
T Consensus 484 W~~~~~~n~~k~~ 496 (792)
T KOG1963|consen 484 WVFTDDSNIYKKS 496 (792)
T ss_pred EEEecccccCcCc
Confidence 9997766655543
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=1e-15 Score=146.73 Aligned_cols=227 Identities=16% Similarity=0.288 Sum_probs=168.4
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVET 262 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 262 (458)
.|..++|-|||..|+.+..+ .+.+||...|..+.++++ |...|.|++| +|..+++|+.|..|.+|...-... .
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---L 88 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccccccc-ccceEEEEEEccCCceeccCCCceeEEEecccccce---e
Confidence 69999999999999888665 799999999999999998 9999999999 689999999999999998764432 1
Q ss_pred EcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeE
Q 012679 263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCI 342 (458)
Q Consensus 263 ~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i 342 (458)
-..|...|.|+.|+|-...|++++- ...-+|....... .+. .....+.+.+|..||.++ +.|- .+|+|
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-------~K~-kss~R~~~CsWtnDGqyl-alG~--~nGTI 156 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-------SKH-KSSSRIICCSWTNDGQYL-ALGM--FNGTI 156 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-------Hhh-hhheeEEEeeecCCCcEE-EEec--cCceE
Confidence 2369999999999999999999886 3466887655432 111 234678899999976555 4444 89999
Q ss_pred EEEECCCCCeeEEEe----CCCCeEEEEEcCCCC-----eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679 343 KFWNTHTGACLNSVD----TGSQVCALLWNKNER-----ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 343 ~lwd~~~~~~~~~~~----~~~~v~~~~~s~~~~-----~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp 413 (458)
.+-+- +|+....++ .+++|.+++|+|... .+++ -....++.+|.+. |+.+..-+.-.-...|+.+.+
T Consensus 157 siRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV--~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~ 232 (1081)
T KOG1538|consen 157 SIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV--ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT 232 (1081)
T ss_pred EeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE--EeccceeEEEEec-ceeecccccCCCCchhheecc
Confidence 99865 444444443 256799999999753 1222 1123344444432 333332222333457899999
Q ss_pred CCCEEEEEeCCCcEEEEec
Q 012679 414 DGCTVASAAADETLRFWNV 432 (458)
Q Consensus 414 dg~~l~s~s~Dg~i~iW~~ 432 (458)
+|.+++.||.|+.+.+|--
T Consensus 233 NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred CCcEEEEccCCCceEEEee
Confidence 9999999999999998853
No 196
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=1.5e-14 Score=147.49 Aligned_cols=296 Identities=16% Similarity=0.183 Sum_probs=200.5
Q ss_pred CCceeeeCCCCCCccccceeeccC---CCeEEEEcCCEEEEEECCC-----CCeeeEEEecCCCCCEEEEEEcCCCCEEE
Q 012679 128 SSERTLDAPDLVDDYYLNLLDWGS---SNVLAIALGSTVYLWDASD-----GTTSELVTVDDENGPVTSVNWAPDGRHIA 199 (458)
Q Consensus 128 ~~~~~l~~~~~~~d~~~~~~~~~~---~~~la~~~d~~v~iwd~~~-----~~~~~~~~~~~h~~~V~~v~~s~~g~~la 199 (458)
.|..++-|.-....-.++.+.-++ ..+++++.||+|++||... +......++......+.++...+.|+.+|
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 566677776555555555555544 4589999999999999763 22223444544578899999999999999
Q ss_pred EEecCCeEEEEeCCCc--e-----eeEEecCCCccc-EEEEEeC---CC-eEEEEeCCCcEEEEEccCCCeeE-EEEccc
Q 012679 200 IGLNNCQVQLWDSTAN--R-----QLRTLRGGHRSR-VGSLAWN---NH-ILTTGGMDGLIINNDVRVRDHIV-ETYRGH 266 (458)
Q Consensus 200 ~g~~dg~v~iwd~~~~--~-----~~~~~~~~~~~~-v~~l~~~---~~-~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h 266 (458)
+|+.||.|++.++... + +.+.......+. |...++. .. .|+.+...+.|..||++...... ......
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 9999999999998762 1 122222212233 3334442 34 88899999999999998764321 122234
Q ss_pred ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee-cccccceeEEEecCCCC--cEEEEeCCCCCCeEE
Q 012679 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQS--NLLATGGGGGDRCIK 343 (458)
Q Consensus 267 ~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~--~ll~s~~g~~d~~i~ 343 (458)
.+.|++++.+|.++++++|+..|.+.+||++-... +... ..+..++..+..+|..+ ...++++-+..+.|.
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~------i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP------ILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCce------eecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 57899999999999999999999999999987655 2222 23457888888887655 555555433678899
Q ss_pred EEECCCCCeeEEEeCCCC--------------------eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee-------
Q 012679 344 FWNTHTGACLNSVDTGSQ--------------------VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM------- 396 (458)
Q Consensus 344 lwd~~~~~~~~~~~~~~~--------------------v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~------- 396 (458)
+|++.+|.+...+-.... .....+...+..+++ |..|..|+.||....+..
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt--ggsd~kIR~wD~~~p~~ss~~~~~~ 1346 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT--GGSDMKIRKWDPTRPEISSYAVPGP 1346 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee--cCCccceeeccCCCcccccccccCc
Confidence 999999987766643211 112222333344444 668999999997321110
Q ss_pred -----------------------------------------EE--------EeCCCCcEEEEEEcCC-CCEEEEEeCCCc
Q 012679 397 -----------------------------------------AE--------LSGHTSRVLFMAQSPD-GCTVASAAADET 426 (458)
Q Consensus 397 -----------------------------------------~~--------~~~h~~~V~~l~~spd-g~~l~s~s~Dg~ 426 (458)
.. -..|...|++|++... ..+|++++.||.
T Consensus 1347 s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~ 1426 (1431)
T KOG1240|consen 1347 STSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGV 1426 (1431)
T ss_pred cccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCe
Confidence 00 0146677888887653 358899999999
Q ss_pred EEEEe
Q 012679 427 LRFWN 431 (458)
Q Consensus 427 i~iW~ 431 (458)
|+||.
T Consensus 1427 IkiWk 1431 (1431)
T KOG1240|consen 1427 IKIWK 1431 (1431)
T ss_pred eeecC
Confidence 99994
No 197
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.69 E-value=7e-14 Score=134.26 Aligned_cols=281 Identities=14% Similarity=0.155 Sum_probs=181.3
Q ss_pred CCeEEEE--cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccE
Q 012679 152 SNVLAIA--LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRV 229 (458)
Q Consensus 152 ~~~la~~--~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v 229 (458)
.+++.+. .++.|.+.|..+.+. +.++......-..+.|+|||+++++++.||.|.++|+.+++.+.++..+....-
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKV--VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SE--EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeE--EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcce
Confidence 4444433 479999999999887 556654333334578999999999999999999999999999999986444433
Q ss_pred EEEEeCCCeEEEEe-CCCcEEEEEccCCCeeEEEEcc-------cccceEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCC
Q 012679 230 GSLAWNNHILTTGG-MDGLIINNDVRVRDHIVETYRG-------HNQEVCGLKWSASGQQLASGGN-DNLLHIWDRSMAS 300 (458)
Q Consensus 230 ~~l~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~-------h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~ 300 (458)
..++.+|+++++++ ..+.+.++|.++.+. ++.+.. ....+.++..+|....++..-. .+.|.+.|.....
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 44444788887765 689999999988764 344332 2346788888998886666655 4888888877664
Q ss_pred CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-----------------------
Q 012679 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----------------------- 357 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~----------------------- 357 (458)
.. ...............|+|++.+++++.. .++.|-++|..+++.+..++
T Consensus 162 ~~-----~~~~i~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~ 234 (369)
T PF02239_consen 162 NL-----KVTTIKVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWA 234 (369)
T ss_dssp CE-----EEEEEE--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEE
T ss_pred cc-----ceeeecccccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEe
Confidence 31 1122223445667899999888887655 56678888877765443321
Q ss_pred --------------------------------CCCCeEEEEEcCCCCeEEEEe--cCCCCcEEEEeCCCceeeEEEeCCC
Q 012679 358 --------------------------------TGSQVCALLWNKNERELLSSH--GFTQNQLTLWKYPSMVKMAELSGHT 403 (458)
Q Consensus 358 --------------------------------~~~~v~~~~~s~~~~~l~~~~--g~~d~~i~iwd~~~~~~~~~~~~h~ 403 (458)
..+.-..+.-+|+++++.+.. +...++|.++|..+.+.+.++....
T Consensus 235 ~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~ 314 (369)
T PF02239_consen 235 TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP 314 (369)
T ss_dssp EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH
T ss_pred eccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC
Confidence 112224556688999988851 2345799999999998888775332
Q ss_pred -CcEEEEEEcCCCCEEEEEeCC--CcEEEEecCCCCcccccC
Q 012679 404 -SRVLFMAQSPDGCTVASAAAD--ETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 404 -~~V~~l~~spdg~~l~s~s~D--g~i~iW~~~~~~~~~~~~ 442 (458)
.++.++.|++||+.+..+..| +.|.+||..+.+......
T Consensus 315 ~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 315 GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 358999999999977655544 369999998888776655
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=8.3e-14 Score=118.62 Aligned_cols=264 Identities=16% Similarity=0.245 Sum_probs=177.0
Q ss_pred CCeEEEEcCCEEEEEECCC---------CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee-----
Q 012679 152 SNVLAIALGSTVYLWDASD---------GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ----- 217 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~---------~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~----- 217 (458)
..++++..+|.|.+..+.+ |+ ..+....+|.++|+.++|. ..+|++|+ ||.|+-|.......
T Consensus 23 ~~l~agn~~G~iav~sl~sl~s~sa~~~gk-~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K 98 (325)
T KOG0649|consen 23 QYLFAGNLFGDIAVLSLKSLDSGSAEPPGK-LKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATK 98 (325)
T ss_pred eEEEEecCCCeEEEEEehhhhccccCCCCC-cceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccch
Confidence 5578888899999998763 22 2355568999999999998 34666665 59999987543221
Q ss_pred -eEEec-CCC-----cccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC
Q 012679 218 -LRTLR-GGH-----RSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND 288 (458)
Q Consensus 218 -~~~~~-~~~-----~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d 288 (458)
+.... .-| -..|+++..+ .+-++.++.|+.++.||++++. +...+++|+..|.++.--.....+++|++|
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~qilsG~ED 177 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQILSGAED 177 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcceeecCCC
Confidence 11111 001 2356677665 3455555689999999999876 578999999999999986667789999999
Q ss_pred CcEEEEeCCCCCCCCcceee---eeecccc-cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEE
Q 012679 289 NLLHIWDRSMASSNSVTQWL---HRLEEHT-SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCA 364 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~---~~~~~h~-~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~ 364 (458)
|+++|||.++.+......+. ..+..|. ..|-+++-+. ..+++|+ ...+.+|+++..++...+.....+..
T Consensus 178 GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg---Gp~lslwhLrsse~t~vfpipa~v~~ 251 (325)
T KOG0649|consen 178 GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG---GPKLSLWHLRSSESTCVFPIPARVHL 251 (325)
T ss_pred ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecC---CCceeEEeccCCCceEEEecccceeE
Confidence 99999999998773222111 1122232 3466666543 4556653 56799999999999999999999998
Q ss_pred EEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 012679 365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASAAADETLRFWN 431 (458)
Q Consensus 365 ~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~ 431 (458)
+.|..+ .+++ +...+.+.-|.+.. .............++..|+-..- +|-.++....+.|+.
T Consensus 252 v~F~~d--~vl~--~G~g~~v~~~~l~G-vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 252 VDFVDD--CVLI--GGEGNHVQSYTLNG-VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eeeecc--eEEE--eccccceeeeeecc-EEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 888654 4444 33667888887743 33333333334455555544333 444455566666653
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=7.8e-15 Score=131.54 Aligned_cols=239 Identities=19% Similarity=0.290 Sum_probs=170.3
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCee-
Q 012679 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHI- 259 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~- 259 (458)
..+..++|++.-..+|++..|-.|++||-.. +....++......|+|++|. ...|+.|+..| |.+|........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 3477899998766789999999999999776 55566665466789999993 57888888865 789976533211
Q ss_pred ------------EEEEcccccceEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679 260 ------------VETYRGHNQEVCGLKWSASGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326 (458)
Q Consensus 260 ------------~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 326 (458)
+....+| ..|+++.|.+||..+++++- |..|.|||..++.... +. ....+.+.-+.|+|+
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p----L~--~~glgg~slLkwSPd 249 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP----LI--PKGLGGFSLLKWSPD 249 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc----cc--ccCCCceeeEEEcCC
Confidence 1222345 68999999999999999885 6789999999887621 22 234567889999999
Q ss_pred CCcEEEEeCCCCCCeEEEEEC-CCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-----------c-
Q 012679 327 QSNLLATGGGGGDRCIKFWNT-HTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-----------M- 393 (458)
Q Consensus 327 ~~~ll~s~~g~~d~~i~lwd~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-----------~- 393 (458)
+..++++. -|+..++|+. ++..+..-.-..+.|...+|+|+|+.|+.++ .+.-.+|.+.. .
T Consensus 250 gd~lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~---sgsp~lysl~f~~~~~~~~~~~~~ 323 (445)
T KOG2139|consen 250 GDVLFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC---SGSPRLYSLTFDGEDSVFLRPQSI 323 (445)
T ss_pred CCEEEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE---cCCceEEEEeecCCCccccCcccc
Confidence 99999875 7999999954 4455555555566899999999999998865 23334443311 0
Q ss_pred ---eeeEEEe------C---CCCcEEEEEEcCCCCEEEEEeCCC--------cEEEEecCCCCc
Q 012679 394 ---VKMAELS------G---HTSRVLFMAQSPDGCTVASAAADE--------TLRFWNVFGAPQ 437 (458)
Q Consensus 394 ---~~~~~~~------~---h~~~V~~l~~spdg~~l~s~s~Dg--------~i~iW~~~~~~~ 437 (458)
..+..+. + -.+.+.+++|.|.|.+||+.-..+ .|.+||......
T Consensus 324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 1111111 1 136688999999999999875543 366777665443
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=4.2e-15 Score=149.36 Aligned_cols=231 Identities=20% Similarity=0.361 Sum_probs=172.2
Q ss_pred CCeEEEEcCCEEEEEECC-CC--CeeeEEE---ec----CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 152 SNVLAIALGSTVYLWDAS-DG--TTSELVT---VD----DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~-~~--~~~~~~~---~~----~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
.-+++++.||.|+||+-- ++ +.+.+.. +. +..+.=.-+.|-....+|++++.-..|+|||......+..+
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence 568999999999999732 22 2211211 11 11111245678886667777777889999999999999998
Q ss_pred cCCCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCe--eEEEEcccccc--eEeEEEcCCCC-EEEEEECCCcEEE
Q 012679 222 RGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDH--IVETYRGHNQE--VCGLKWSASGQ-QLASGGNDNLLHI 293 (458)
Q Consensus 222 ~~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~h~~~--v~~l~~spd~~-~l~sg~~dg~i~i 293 (458)
..+....|++++- +|+++++|..||.|++||.+.... .+...+.|+.. |..+.+.+.|- .|++|+.||.|++
T Consensus 1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence 8767788888887 479999999999999999987653 67788889887 99999988665 4999999999999
Q ss_pred EeCCCCCCCCcceeeeeeccc---ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--------CCCe
Q 012679 294 WDRSMASSNSVTQWLHRLEEH---TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--------GSQV 362 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--------~~~v 362 (458)
||++...... ..++..| .+.++++..++ ...++|+|+ . +.|+||++.. +.+..+.. ...+
T Consensus 1284 ~DlR~~~~e~----~~~iv~~~~yGs~lTal~VH~-hapiiAsGs--~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1284 LDLRMSSKET----FLTIVAHWEYGSALTALTVHE-HAPIIASGS--A-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred EecccCcccc----cceeeeccccCccceeeeecc-CCCeeeecC--c-ceEEEEecCh-hhhcccccCcccccCcCCCc
Confidence 9999853311 1222223 23589999998 477888876 4 8999999864 43333321 2357
Q ss_pred EEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679 363 CALLWNKNERELLSSHGFTQNQLTLWKYPSM 393 (458)
Q Consensus 363 ~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~ 393 (458)
.+++|+|..-.+++ |+.|+.|.||..+..
T Consensus 1355 scL~FHP~~~llAa--G~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAA--GSADSTVSIYSCEKP 1383 (1387)
T ss_pred ceeeecchhHhhhh--ccCCceEEEeecCCc
Confidence 89999999888887 789999999987654
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=9.1e-14 Score=133.19 Aligned_cols=228 Identities=10% Similarity=0.115 Sum_probs=154.5
Q ss_pred EEecCCeEEEEeCCC-ce--eeEEecCCCcccEEEEEe--CCCeEEEE-eCCCcEEEEEccCCCee--EEEEcccccceE
Q 012679 200 IGLNNCQVQLWDSTA-NR--QLRTLRGGHRSRVGSLAW--NNHILTTG-GMDGLIINNDVRVRDHI--VETYRGHNQEVC 271 (458)
Q Consensus 200 ~g~~dg~v~iwd~~~-~~--~~~~~~~~~~~~v~~l~~--~~~~l~sg-~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~ 271 (458)
+...++.|.+||+.+ ++ .+..+. +......+++ ++++|+++ ..++.|.+|++.....+ .... ......+
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~ 83 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT 83 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence 336688999999964 32 444554 3344556666 56777665 45889999999733221 2222 2334577
Q ss_pred eEEEcCCCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679 272 GLKWSASGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350 (458)
Q Consensus 272 ~l~~spd~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~ 350 (458)
.+.|+|++++|++++. ++.|.+|++....... ..+..+. +......++++|++..++++.. .++.|.+||+.+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~--~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~--~~~~v~v~d~~~~ 158 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPV--APIQIIE-GLEGCHSANIDPDNRTLWVPCL--KEDRIRLFTLSDD 158 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC--Cceeecc-CCCcccEeEeCCCCCEEEEeeC--CCCEEEEEEECCC
Confidence 8999999999888764 8899999986432210 1122222 2334567889999888888776 7899999999874
Q ss_pred CeeE-------EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC--c--eeeEEEeCCC------CcEEEEEEcC
Q 012679 351 ACLN-------SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS--M--VKMAELSGHT------SRVLFMAQSP 413 (458)
Q Consensus 351 ~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~--~--~~~~~~~~h~------~~V~~l~~sp 413 (458)
..+. ....+.....+.|+|++++++++.. .++.|.+|++.. + +.+.++..+. .....+.++|
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEec-CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 3221 2234556788999999999988753 489999999973 2 3344443221 2234689999
Q ss_pred CCCEEEEEeC-CCcEEEEecCCCC
Q 012679 414 DGCTVASAAA-DETLRFWNVFGAP 436 (458)
Q Consensus 414 dg~~l~s~s~-Dg~i~iW~~~~~~ 436 (458)
+|++|+++.. ++.|.+|++....
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCC
Confidence 9999988854 7899999996543
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=142.69 Aligned_cols=204 Identities=19% Similarity=0.360 Sum_probs=155.6
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 231 (458)
+.++.++.||.+.|.+- .+++ -..+..|.+.|.|-.|+|||.-|++++.||.|++|. ++|-...++-. ...+|.|
T Consensus 76 d~~~i~s~DGkf~il~k-~~rV--E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q-~~~~v~c 150 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARV--ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQ-NEESIRC 150 (737)
T ss_pred ceEEEEcCCceEEEecc-cchh--hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhh-cCceeEE
Confidence 45888889999999973 4554 345678999999999999999999999999999998 44444334443 7789999
Q ss_pred EEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679 232 LAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL 308 (458)
Q Consensus 232 l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 308 (458)
++|. ++.+++.+ +.+.+=-+..... +-..+.|.+-|.++.|++..+++++||+|-..+|||..... +
T Consensus 151 ~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~-------L 220 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQG--GHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN-------L 220 (737)
T ss_pred EEECCCCCceEEecC--CeEEEeecccccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-------c
Confidence 9994 35555544 4566655554443 45678999999999999999999999999999999965432 5
Q ss_pred eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEE
Q 012679 309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTL 387 (458)
Q Consensus 309 ~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~i 387 (458)
..-..|..+|++++|.|+ .+++.++ -+++++=.. ..+.|..+.|++||..+.+ |...|.+.+
T Consensus 221 f~S~~~ey~ITSva~npd--~~~~v~S---~nt~R~~~p----------~~GSifnlsWS~DGTQ~a~--gt~~G~v~~ 282 (737)
T KOG1524|consen 221 FTSAAEEYAITSVAFNPE--KDYLLWS---YNTARFSSP----------RVGSIFNLSWSADGTQATC--GTSTGQLIV 282 (737)
T ss_pred ccCChhccceeeeeeccc--cceeeee---eeeeeecCC----------CccceEEEEEcCCCceeec--cccCceEEE
Confidence 666789999999999997 5666553 345552222 2456889999999999988 546676654
No 203
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.68 E-value=5.1e-15 Score=134.56 Aligned_cols=247 Identities=20% Similarity=0.338 Sum_probs=177.8
Q ss_pred CCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCce---------eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEE
Q 012679 183 NGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANR---------QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIIN 250 (458)
Q Consensus 183 ~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~---------~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~v 250 (458)
..+|.++.|.++.. .||+|+.|..|+||-+..+. .+..+.. |...|+++.|+ |.+|++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~-H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSR-HTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccC-CcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 46799999998766 99999999999999875432 2233444 99999999996 579999999999999
Q ss_pred EEcc--------C-----C--CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccc
Q 012679 251 NDVR--------V-----R--DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT 315 (458)
Q Consensus 251 wd~~--------~-----~--~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 315 (458)
|-.. + . -.....+.+|...|..++|+|+++++++++.|+.+++||+..+.. ...+.+|.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l------~~~~~dh~ 165 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL------LAILDDHE 165 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee------Eeeccccc
Confidence 9765 2 1 123456778999999999999999999999999999999999987 78889999
Q ss_pred cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--------------------C----CCCeEEEEEcCCC
Q 012679 316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--------------------T----GSQVCALLWNKNE 371 (458)
Q Consensus 316 ~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--------------------~----~~~v~~~~~s~~~ 371 (458)
..|..++|.|-+.++ ++-+ .|+..+.+.+.....+..+. + ..-...++|+|+|
T Consensus 166 ~yvqgvawDpl~qyv-~s~s--~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG 242 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYV-ASKS--SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG 242 (434)
T ss_pred cccceeecchhhhhh-hhhc--cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence 999999999965544 4443 67777777665544332221 0 1124567899999
Q ss_pred CeEEEEecCC-------CCcEEEEeCCC-ceeeEEEeCCCCcEEEEEEcC------------------CCCEEEEEeCCC
Q 012679 372 RELLSSHGFT-------QNQLTLWKYPS-MVKMAELSGHTSRVLFMAQSP------------------DGCTVASAAADE 425 (458)
Q Consensus 372 ~~l~~~~g~~-------d~~i~iwd~~~-~~~~~~~~~h~~~V~~l~~sp------------------dg~~l~s~s~Dg 425 (458)
..+++-.|.- -+..++|+-.. .++...+.+...++..+.|+| -+-.++.++ -.
T Consensus 243 ~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~ 321 (434)
T KOG1009|consen 243 SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KN 321 (434)
T ss_pred cEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cc
Confidence 9998744321 23345555443 234555666666666666665 122344444 45
Q ss_pred cEEEEecCCCCcccc
Q 012679 426 TLRFWNVFGAPQVIS 440 (458)
Q Consensus 426 ~i~iW~~~~~~~~~~ 440 (458)
.|.|||.....+...
T Consensus 322 svyvydtq~~~P~~~ 336 (434)
T KOG1009|consen 322 SVYVYDTQTLEPLAV 336 (434)
T ss_pred eEEEeccccccceEE
Confidence 799999876555443
No 204
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.2e-14 Score=141.05 Aligned_cols=237 Identities=18% Similarity=0.174 Sum_probs=159.4
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEeCCCceeeEEecCCCcccEEEEEe--C
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---CQVQLWDSTANRQLRTLRGGHRSRVGSLAW--N 235 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~ 235 (458)
..|++||...+.. ..+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... .. ......+.+| +
T Consensus 184 ~~l~i~D~~g~~~---~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~-~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYNP---QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-AS-FRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCCc---eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-cc-CCCCccCceECCC
Confidence 3699999876554 2344456789999999999999988643 4699999988765432 22 3344556778 4
Q ss_pred CCeE-EEEeCCC--cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CCc--EEEEeCCCCCCCCcceeee
Q 012679 236 NHIL-TTGGMDG--LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DNL--LHIWDRSMASSNSVTQWLH 309 (458)
Q Consensus 236 ~~~l-~sg~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~--i~iwd~~~~~~~~~~~~~~ 309 (458)
++.| ++.+.+| .|++||+.++. ...+..+.......+|+|||+.|+.++. +|. |+++|+..+.. .
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-------~ 329 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-------E 329 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-------E
Confidence 6655 4556665 59999998765 3445555555678899999999987764 444 66667655432 2
Q ss_pred eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC-CCCcEEEE
Q 012679 310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF-TQNQLTLW 388 (458)
Q Consensus 310 ~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~-~d~~i~iw 388 (458)
.+..+.......+|+|++..++++........|.+||+.+++.. .+..+.......|+|+|+.++.+... ..+.|.++
T Consensus 330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 22223334557899999988877654112346999999888765 33333345667999999998876432 23467888
Q ss_pred eCCCceeeEEEeCCCCcEEEEEEcC
Q 012679 389 KYPSMVKMAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 389 d~~~~~~~~~~~~h~~~V~~l~~sp 413 (458)
+... .....+..+.+.+...+|+|
T Consensus 409 ~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 409 STDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ECCC-CceEEcccCCCCCCCCccCC
Confidence 8754 44555655666777788876
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=1.8e-14 Score=127.26 Aligned_cols=233 Identities=18% Similarity=0.267 Sum_probs=175.5
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD 257 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~ 257 (458)
..+|+|.+|++|+..+|++..+..|.||...... ..+++.. |...|+++.|+ .+.|++++.|..-++|....+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 5689999999999999999999999999876554 6677777 99999999996 5789999999999999985443
Q ss_pred e--eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679 258 H--IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 258 ~--~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
. ....+..++..++++.|+|.++.||+|+.-..|.||-++....=-.. .+.-+.+...|.++.|+|+ +-++++|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs--KhikkPirStv~sldWhpn-nVLlaaGs 165 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS--KHIKKPIRSTVTSLDWHPN-NVLLAAGS 165 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh--hhhCCccccceeeeeccCC-cceecccc
Confidence 2 23455678899999999999999999999999999988765531111 1223456788999999994 66777765
Q ss_pred CCCCCeEEEEECC-----C-------------CCeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-e
Q 012679 336 GGGDRCIKFWNTH-----T-------------GACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-K 395 (458)
Q Consensus 336 g~~d~~i~lwd~~-----~-------------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~ 395 (458)
.|+..+++..- . |+.+..+ ..++-+..+.|+|+|..|+-.. .|..+.+-|..... .
T Consensus 166 --~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~--Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 166 --TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG--HDSTVSFVDAAGPSER 241 (361)
T ss_pred --cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec--CCCceEEeecCCCchh
Confidence 99999998632 1 1223333 3456799999999999998753 78999999887654 3
Q ss_pred eEEEeCCCCcEEEEEEcCCCCEEEEEeCC
Q 012679 396 MAELSGHTSRVLFMAQSPDGCTVASAAAD 424 (458)
Q Consensus 396 ~~~~~~h~~~V~~l~~spdg~~l~s~s~D 424 (458)
+..+..-.-+.+++.|-.+.. ++.++.|
T Consensus 242 v~~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred ccchhhccCCceeeEeecCCc-eeecCCC
Confidence 444433336667777765443 3444454
No 206
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=5.4e-14 Score=139.02 Aligned_cols=250 Identities=15% Similarity=0.092 Sum_probs=160.3
Q ss_pred CCeEEEEcC---CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEeCCCceeeEEecCCC
Q 012679 152 SNVLAIALG---STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---CQVQLWDSTANRQLRTLRGGH 225 (458)
Q Consensus 152 ~~~la~~~d---~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g~v~iwd~~~~~~~~~~~~~~ 225 (458)
..++.+... ..|+++|...... ..+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... .. .
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~---~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~-~ 238 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNA---QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-AN-F 238 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCc---eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ec-C
Confidence 345544433 4688888755443 2333566789999999999999887643 3599999998875433 22 3
Q ss_pred cccEEEEEe--CCCeEE-EEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCCC
Q 012679 226 RSRVGSLAW--NNHILT-TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DNLLHIWDRSMASS 301 (458)
Q Consensus 226 ~~~v~~l~~--~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~~ 301 (458)
...+.+.+| +++.|+ +.+.+|...+|.+.........+..+........|+|||+.|+..+. +|...||.+.....
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 345567788 466665 56778876666554322224455555556677899999999887664 46666766543221
Q ss_pred CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC
Q 012679 302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT 381 (458)
Q Consensus 302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~ 381 (458)
. ...+..+.......+|+|++..++++.....+..|.+||+.+++..... .........|+|+++.|+.+.. .
T Consensus 319 ~-----~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~~~~~~p~~spdg~~l~~~~~-~ 391 (427)
T PRK02889 319 A-----AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DTTRDESPSFAPNGRYILYATQ-Q 391 (427)
T ss_pred c-----eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CCCCccCceECCCCCEEEEEEe-c
Confidence 1 1222222233446789999988877654112237999999988755433 3334567899999999988753 2
Q ss_pred CC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCC
Q 012679 382 QN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPD 414 (458)
Q Consensus 382 d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd 414 (458)
.| .+.+.+. ++.....+..+.+.+...+|+|-
T Consensus 392 ~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 392 GGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 33 3556666 45555566666677777888873
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2e-14 Score=135.17 Aligned_cols=207 Identities=19% Similarity=0.299 Sum_probs=144.0
Q ss_pred CCccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCC
Q 012679 139 VDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTA 214 (458)
Q Consensus 139 ~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~ 214 (458)
-...++|+++|+. .-+++|+.|-.+.|||.-..+...... .+|...|.+++|-| +.+.+++|..|..|+++|+..
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 3457999999987 346666677899999988766533332 48999999999999 567899999999999999974
Q ss_pred c----------eeeEEecCCCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeEE---------EEcccccceEe
Q 012679 215 N----------RQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVE---------TYRGHNQEVCG 272 (458)
Q Consensus 215 ~----------~~~~~~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~---------~~~~h~~~v~~ 272 (458)
. +..+.+.. |..+|..|+. .++.+.+++.||+|+-||++....+.. .+...--...+
T Consensus 127 ~~~~~~d~~~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ 205 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKC 205 (758)
T ss_pred ccccccccCccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeee
Confidence 2 23334444 8888888887 358999999999999999987432111 11122235678
Q ss_pred EEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCc------------ceeeeeec-ccc-----------cceeEEEecCCC
Q 012679 273 LKWSA-SGQQLASGGNDNLLHIWDRSMASSNSV------------TQWLHRLE-EHT-----------SAVKAIAWCPFQ 327 (458)
Q Consensus 273 l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~------------~~~~~~~~-~h~-----------~~v~~l~~~p~~ 327 (458)
+..+| +..+||+|+.|-..++||.+....... ..++..+. +|. ..++-++|+|+|
T Consensus 206 ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNG 285 (758)
T KOG1310|consen 206 LTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNG 285 (758)
T ss_pred eeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCC
Confidence 99999 456889999999999999543221100 00011111 111 125678899999
Q ss_pred CcEEEEeCCCCCCeEEEEECCCC
Q 012679 328 SNLLATGGGGGDRCIKFWNTHTG 350 (458)
Q Consensus 328 ~~ll~s~~g~~d~~i~lwd~~~~ 350 (458)
..+|++-+ .-.|+++|+..+
T Consensus 286 tElLvs~~---gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 286 TELLVSWG---GEHVYLFDVNED 305 (758)
T ss_pred cEEEEeeC---CeEEEEEeecCC
Confidence 99998875 335777776543
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.9e-14 Score=142.48 Aligned_cols=209 Identities=15% Similarity=0.204 Sum_probs=145.9
Q ss_pred CCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC---CcEEEEEccCCCe-eEEEEcccccceEeEEEcC
Q 012679 204 NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD---GLIINNDVRVRDH-IVETYRGHNQEVCGLKWSA 277 (458)
Q Consensus 204 dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d---g~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~sp 277 (458)
+..|.+||..... .+.+.. |...+.+.+| +++.|+.++.+ ..|++||+.++.. .+..+.+| ...++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~-~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNR-SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEecc-CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC
Confidence 4689999986555 445554 7788999999 46778777643 4699999987653 22333333 44689999
Q ss_pred CCCEEEEEE-CCCcEEEE--eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-Cee
Q 012679 278 SGQQLASGG-NDNLLHIW--DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACL 353 (458)
Q Consensus 278 d~~~l~sg~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~~~ 353 (458)
||+.|+.++ .+|.+.|| |+..+. ...+..+...+...+|+|++..+++++. .++..++|++... ...
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGT-------PSQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSASGGGA 328 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCC-------eEeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECCCCCe
Confidence 999988765 67876665 554433 3455567777889999999888887765 6677788876432 222
Q ss_pred EEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 354 NSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 354 ~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
..+.... ....|+|+++.++.+++ ..+.+||+.+++.......+ ....+.|+|||++|+.++.+|.+.+|.+.
T Consensus 329 ~~l~~~~--~~~~~SpDG~~ia~~~~---~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 329 SLVGGRG--YSAQISADGKTLVMING---DNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEecCCC--CCccCCCCCCEEEEEcC---CCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3332222 45789999999988643 45777999887654322222 23567899999999999999999988874
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.66 E-value=7.4e-15 Score=137.86 Aligned_cols=260 Identities=17% Similarity=0.296 Sum_probs=178.2
Q ss_pred CCeEEEEcCCEEEEEECCCCCe--eeEEEecCCCCCEEEEEE-----cCCCCEEEEEecCCeEEEEeCCCceeeEEecC-
Q 012679 152 SNVLAIALGSTVYLWDASDGTT--SELVTVDDENGPVTSVNW-----APDGRHIAIGLNNCQVQLWDSTANRQLRTLRG- 223 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~--~~~~~~~~h~~~V~~v~~-----s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~- 223 (458)
..-++-..+..+++|+...+.. .++....-.....+|-+| .+.+--|.+|...|.|++.|....+..+.+..
T Consensus 135 gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~ 214 (636)
T KOG2394|consen 135 GDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEE 214 (636)
T ss_pred CCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhc
Confidence 4456666677889998774321 112111111223445555 34677889999999999999766332222211
Q ss_pred --CCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEE--EcCCCCEEEEEECCCcEEEEeC
Q 012679 224 --GHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLK--WSASGQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 224 --~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~--~spd~~~l~sg~~dg~i~iwd~ 296 (458)
-....|+|+.| +...++++-.+|.+++||.... ...+... ..+++..++....-+
T Consensus 215 r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------~~~t~p~~~~~k~~~~f~i~t~ks------- 276 (636)
T KOG2394|consen 215 RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------CGATAPSYQALKDGDQFAILTSKS------- 276 (636)
T ss_pred ccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------ccCCCCcccccCCCCeeEEeeeec-------
Confidence 13478999999 5688889999999999987211 1111112 224565555443211
Q ss_pred CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEE
Q 012679 297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELL 375 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~ 375 (458)
.... .++....--.+.|..++|+||+.+|..++ .||.+||+|..+.+.+..++. -+...+++|+|||++|+
T Consensus 277 k~~r-----NPv~~w~~~~g~in~f~FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIv 348 (636)
T KOG2394|consen 277 KKTR-----NPVARWHIGEGSINEFAFSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIV 348 (636)
T ss_pred cccC-----CccceeEeccccccceeEcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEE
Confidence 1110 11333333456899999999876665554 899999999999887765543 46789999999999999
Q ss_pred EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-----------------------------------CC-----
Q 012679 376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-----------------------------------DG----- 415 (458)
Q Consensus 376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-----------------------------------dg----- 415 (458)
+ |.+|..|.||.+...+.++.-+||.+.|..++|.| ++
T Consensus 349 t--GGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~ 426 (636)
T KOG2394|consen 349 T--GGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSS 426 (636)
T ss_pred e--cCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccc
Confidence 9 77999999999999999999999999999999983 01
Q ss_pred --------CEEEEEeCCCcEEEEecCCCCccc
Q 012679 416 --------CTVASAAADETLRFWNVFGAPQVI 439 (458)
Q Consensus 416 --------~~l~s~s~Dg~i~iW~~~~~~~~~ 439 (458)
-.+.+.+.|-.+.+||+.......
T Consensus 427 ~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 427 FNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cccccceEEEeecccccceEEEEecchhhccc
Confidence 246788889999999998765444
No 210
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=140.80 Aligned_cols=256 Identities=18% Similarity=0.277 Sum_probs=200.9
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEeCCCcEEEE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDGLIINN 251 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~~dg~i~vw 251 (458)
...+..|.+.|..|.|...|..|++|+.|..|.+||...++....+..+|...|..-.| +...+++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 45678899999999999999999999999999999999999999999889999988777 34789999999999988
Q ss_pred EccCCCee--EEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc---ceeEEEecC
Q 012679 252 DVRVRDHI--VETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS---AVKAIAWCP 325 (458)
Q Consensus 252 d~~~~~~~--~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p 325 (458)
.+.....+ ...+..|.+.|..++.-|+. .-|.+++.|+.+.-+|++........ ..-..+.. ...+++..|
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~---~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF---VCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee---eeeccCCccceeeeeEecCC
Confidence 76554432 34566799999999999964 56899999999999999887663322 22223333 567899999
Q ss_pred CCCcEEEEeCCCCCCeEEEEECCCCCe------eEEE-------eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC-
Q 012679 326 FQSNLLATGGGGGDRCIKFWNTHTGAC------LNSV-------DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP- 391 (458)
Q Consensus 326 ~~~~ll~s~~g~~d~~i~lwd~~~~~~------~~~~-------~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~- 391 (458)
...+.+++++ .|..+++||.+.-.. +..+ +....|++++|+.++..+++ .+.|-.|++|.-.
T Consensus 292 ~nt~~faVgG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 292 RNTNEFAVGG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSM 367 (559)
T ss_pred CCccccccCC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEecccc
Confidence 9999999987 999999999875321 2222 22346999999999999988 4588999999532
Q ss_pred -Cc----------eeeEE-EeCCCCc--EEEEEE-cCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 392 -SM----------VKMAE-LSGHTSR--VLFMAQ-SPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 392 -~~----------~~~~~-~~~h~~~--V~~l~~-spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
.+ ..+.. ++||... |.++-| -|...++++|+.-|.|.||+-.+++.+
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 12 22233 7888743 666664 688999999999999999998766544
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.6e-15 Score=136.36 Aligned_cols=200 Identities=18% Similarity=0.195 Sum_probs=151.4
Q ss_pred EEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee
Q 012679 230 GSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW 307 (458)
Q Consensus 230 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 307 (458)
.++++ ++..|++|+.||++++|+...... +.....|..+|.++.|+|||++|++-+.| ..+||+.+++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~------ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA------ 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch------
Confidence 44555 679999999999999999765554 45566789999999999999999999999 999999999854
Q ss_pred eeeec--ccccceeEEEecCCC--Cc-EEEEeCCCCCCeEEEEECCCCCe------eEEEeCCCCeEEEEEcCCCCeEEE
Q 012679 308 LHRLE--EHTSAVKAIAWCPFQ--SN-LLATGGGGGDRCIKFWNTHTGAC------LNSVDTGSQVCALLWNKNERELLS 376 (458)
Q Consensus 308 ~~~~~--~h~~~v~~l~~~p~~--~~-ll~s~~g~~d~~i~lwd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~ 376 (458)
+.... ........+.|+.++ .. ++++. -..-+.|+.||+..... .+.+.....|.+++.+.+|++++.
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~-~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAAS-QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEe-cCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 33222 223345566676653 22 33332 22445677766654322 222334567999999999999999
Q ss_pred EecCCCCcEEEEeCCCceeeEEE-eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 377 SHGFTQNQLTLWKYPSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
|..+|.|.|++..+++.+.-. +.|...|+.+.|+||.+++++.+.|....+-.+.-......
T Consensus 299 --GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~~~ 361 (398)
T KOG0771|consen 299 --GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTMQL 361 (398)
T ss_pred --eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecccccc
Confidence 668999999999999887765 57999999999999999999999999999998876444433
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=2.3e-14 Score=125.24 Aligned_cols=160 Identities=18% Similarity=0.355 Sum_probs=116.7
Q ss_pred eEeEEEcCCCCEEEEEEC----------CCcEEEEeCCCCCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCCC
Q 012679 270 VCGLKWSASGQQLASGGN----------DNLLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGGG 338 (458)
Q Consensus 270 v~~l~~spd~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~~ 338 (458)
-..+.|+++|.+|+.-.. -+...+|.++..... ...+. ...++|.+++|+|++..++++. |..
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-----~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~ 81 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-----VESIELKKEGPIHDVAWSPNGNEFAVIY-GSM 81 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-----cceeeccCCCceEEEEECcCCCEEEEEE-ccC
Confidence 356889999988865433 133555555433321 22222 2345699999999888776654 347
Q ss_pred CCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEe-cCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCE
Q 012679 339 DRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417 (458)
Q Consensus 339 d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~ 417 (458)
++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++ |...|.|.+||..+.+.+.+.. |. .++.++|+|||++
T Consensus 82 ~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 82 PAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRY 157 (194)
T ss_pred CcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCE
Confidence 7899999996 77777765 45678999999999999863 3345789999999999988775 33 4789999999999
Q ss_pred EEEEeC------CCcEEEEecCCCCcccc
Q 012679 418 VASAAA------DETLRFWNVFGAPQVIS 440 (458)
Q Consensus 418 l~s~s~------Dg~i~iW~~~~~~~~~~ 440 (458)
|++++. |..++||++.+ ..+.+
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~G-~~l~~ 185 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQG-RLLYK 185 (194)
T ss_pred EEEEEeccceeccccEEEEEecC-eEeEe
Confidence 999874 78999999864 44433
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.5e-13 Score=136.55 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=160.8
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEeCCCceeeEEecCCCcccEEEEEe--CC
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN---NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NN 236 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~ 236 (458)
.|++||...... ..+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+.. +...+...+| ++
T Consensus 183 ~l~~~d~dg~~~---~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~-~~g~~~~~~~SPDG 257 (435)
T PRK05137 183 RLAIMDQDGANV---RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGN-FPGMTFAPRFSPDG 257 (435)
T ss_pred EEEEECCCCCCc---EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eeec-CCCcccCcEECCCC
Confidence 899999876554 334456778999999999999988764 468999999888653 3333 5556777788 46
Q ss_pred CeE-EEEeCCCc--EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CC--cEEEEeCCCCCCCCcceeeee
Q 012679 237 HIL-TTGGMDGL--IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN--LLHIWDRSMASSNSVTQWLHR 310 (458)
Q Consensus 237 ~~l-~sg~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~ 310 (458)
+.| ++.+.+|. |++||+.++. ...+..+........|+|||+.|+..+. +| .|++||+..+.. ..
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-------~~ 328 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-------RR 328 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-------EE
Confidence 655 45666665 7777887654 3455556666778999999999987764 33 688888765432 33
Q ss_pred ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCC----CcEE
Q 012679 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ----NQLT 386 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d----~~i~ 386 (458)
+..+...+....|+|++..++++.....+..|.+||+.++. ...+.....+....|+|+|+.|+.+..... ..|.
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 33344556778999999888877642233578899986554 344444445778899999999887643222 3678
Q ss_pred EEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679 387 LWKYPSMVKMAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 387 iwd~~~~~~~~~~~~h~~~V~~l~~sp 413 (458)
++|+..+.. ..+. ..+.+...+|+|
T Consensus 408 ~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 408 TVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EEECCCCce-EEcc-CCCCccCcccCC
Confidence 888765544 3343 234456667776
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=1.8e-14 Score=127.29 Aligned_cols=205 Identities=20% Similarity=0.279 Sum_probs=165.4
Q ss_pred CcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679 225 HRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 225 ~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
...+|+|.+|+ ...++.+.....|.||.....+ ....++..|...|++++|+|..+.|++|+.|..-++|....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 45789999995 6889999999999999988766 3567888999999999999999999999999999999985433
Q ss_pred CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee-----EEEeCCCCeEEEEEcCCCCeEE
Q 012679 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL-----NSVDTGSQVCALLWNKNERELL 375 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~ 375 (458)
. .++...+..++.+.+++.|+| .++.+|+|+ .-+.|.+|-++...-- ......+.|.++.|+|++-.++
T Consensus 89 ~---WkptlvLlRiNrAAt~V~WsP-~enkFAVgS--gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 89 T---WKPTLVLLRINRAATCVKWSP-KENKFAVGS--GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred e---eccceeEEEeccceeeEeecC-cCceEEecc--CccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 2 233555667899999999999 477888877 6778888877653321 1223457799999999998888
Q ss_pred EEecCCCCcEEEEeC------------------CCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679 376 SSHGFTQNQLTLWKY------------------PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 376 ~~~g~~d~~i~iwd~------------------~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
+ |..|+..+||.. +-++.+.++....+.|..+.|+|+|..|+-.+.|+++.+=|-..+.+
T Consensus 163 a--Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 163 A--GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred c--cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence 8 778999999874 22445556655678899999999999999999999999999877754
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5e-15 Score=137.48 Aligned_cols=289 Identities=16% Similarity=0.246 Sum_probs=214.0
Q ss_pred ccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCce
Q 012679 141 DYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANR 216 (458)
Q Consensus 141 d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~ 216 (458)
..++|.+.|+. ..+++++.|-.|.+||+..++.. +.-..+|...|...+|-| +...+++++.||.|++=.+....
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~-l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~ 220 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK-LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG 220 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhccCcc-cccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc
Confidence 35788888876 56777888899999999988752 333458999999999998 45678999999999987764332
Q ss_pred -ee--EEecCCCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCee--EEEEccccc---ceEeEEEcCCC-CEEEE
Q 012679 217 -QL--RTLRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHI--VETYRGHNQ---EVCGLKWSASG-QQLAS 284 (458)
Q Consensus 217 -~~--~~~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~~h~~---~v~~l~~spd~-~~l~s 284 (458)
+. ..+. .|.++|..++. ++..|.+++.|+.+.-+|++..... ......+.. ....++..|.. .++++
T Consensus 221 ~~e~t~rl~-~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 221 YVENTKRLA-PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred ceecceecc-cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence 22 2233 49999999988 4689999999999999999876431 122223333 56788888854 48999
Q ss_pred EECCCcEEEEeCCCCCCCCcceeeeeec------ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-------
Q 012679 285 GGNDNLLHIWDRSMASSNSVTQWLHRLE------EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA------- 351 (458)
Q Consensus 285 g~~dg~i~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~------- 351 (458)
|+.|..+++||.+..........+.++. .....|++++++.++..++++- .|-.|++++-.-+.
T Consensus 300 gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 300 GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccceEEeccccccCCCCCCC
Confidence 9999999999987655432222222222 3345689999998899999987 68889999543221
Q ss_pred -----eeEE-EeCC---CCeEEEE-EcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEE
Q 012679 352 -----CLNS-VDTG---SQVCALL-WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA 421 (458)
Q Consensus 352 -----~~~~-~~~~---~~v~~~~-~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 421 (458)
.+.. ++.+ ..|..+- |-|...++++ |.+-|.|.||+-.+++.+.-+++....|+||.-+|--..||++
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS--GSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS--GSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCccceEEe--cCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 1122 2221 2255554 4567777777 7788999999999999999888877799999999999999999
Q ss_pred eCCCcEEEEecCCCC
Q 012679 422 AADETLRFWNVFGAP 436 (458)
Q Consensus 422 s~Dg~i~iW~~~~~~ 436 (458)
|-|.-|+||--.+.+
T Consensus 455 Gid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 455 GIDHDVKIWTPLTAE 469 (559)
T ss_pred CCccceeeecCCccc
Confidence 999999999864443
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=6e-13 Score=117.78 Aligned_cols=241 Identities=13% Similarity=0.171 Sum_probs=167.1
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCc--ccEEEEEeCCCeEE-EEeCC------CcEEEEEccC
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR--SRVGSLAWNNHILT-TGGMD------GLIINNDVRV 255 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~--~~v~~l~~~~~~l~-sg~~d------g~i~vwd~~~ 255 (458)
...+++|+.|..-+++|..+| .+||+.+--+....... +. -.+..+-|..++|+ +|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~-~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~- 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF-IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL- 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc-ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc-
Confidence 355699999999999999887 89998876433222111 11 22333334344443 44433 479999943
Q ss_pred CCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC-CCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679 256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA-SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG 334 (458)
Q Consensus 256 ~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~ 334 (458)
.+.++..+ ....+|.++.+.++ .|++. ..+.|+||..... +. ++.+.....+=--++.+|....-+.+.
T Consensus 84 k~~~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~------l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 84 KERCIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL------LHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred cCcEEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh------eeeeecccCCCceEeecCCCCceEEEc
Confidence 33334443 35788999999765 45554 4578999998743 32 444433222222345556544444444
Q ss_pred CCCCCCeEEEEECCCCCe---eEEEeCCCCeEEEEEcCCCCeEEEEecCCCC-cEEEEeCCCceeeEEEeCCC--CcEEE
Q 012679 335 GGGGDRCIKFWNTHTGAC---LNSVDTGSQVCALLWNKNERELLSSHGFTQN-QLTLWKYPSMVKMAELSGHT--SRVLF 408 (458)
Q Consensus 335 ~g~~d~~i~lwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~-~i~iwd~~~~~~~~~~~~h~--~~V~~ 408 (458)
-|..-|.|++-|+...+. .....+.+.|.+++.+.+|..+++++ ..| .|+|||..+++++.+++.-. ..|.+
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 466789999999987665 55556788999999999999999964 556 58999999999999997443 56999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 409 MAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 409 l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
|+|||++.+|+.+|.-|+|.|+.+.......+
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecCCCCcc
Confidence 99999999999999999999999987664444
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=2.1e-13 Score=139.41 Aligned_cols=255 Identities=14% Similarity=0.191 Sum_probs=176.1
Q ss_pred EEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCc-------eeeEEecCCCcccEEEEEe--CCCeEEEEeCC
Q 012679 176 LVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTAN-------RQLRTLRGGHRSRVGSLAW--NNHILTTGGMD 245 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~-------~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d 245 (458)
+..+..|...|..++.+++ +.++++|+.||+|++||...- +...++.. ...++.++.. +++.+|.++.|
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEcCC
Confidence 6777889999999998875 499999999999999997532 12223332 4456666555 78999999999
Q ss_pred CcEEEEEccCCC--ee----EEEEccc-ccc-eEeEEEcC-CCC-EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccc
Q 012679 246 GLIINNDVRVRD--HI----VETYRGH-NQE-VCGLKWSA-SGQ-QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT 315 (458)
Q Consensus 246 g~i~vwd~~~~~--~~----~~~~~~h-~~~-v~~l~~sp-d~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 315 (458)
|.|.+.++.... .. ......+ .+. |..-+|.. .+. .|+.+..-+.|..||+++.... +..+.....
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~----w~lk~~~~h 1195 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA----WRLKNQLRH 1195 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH----HhhhcCccc
Confidence 999999987621 10 1111111 222 33333333 233 6888888999999999887652 123334456
Q ss_pred cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcCCCC--eEEEEecC-CCCcEEEEeC
Q 012679 316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNER--ELLSSHGF-TQNQLTLWKY 390 (458)
Q Consensus 316 ~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~~~~--~l~~~~g~-~d~~i~iwd~ 390 (458)
+.|++++.+|.+. .++.|. ..|.+.+||++-+.++....++ .++..+..+|-.. ...+++|. ..+.|.+|++
T Consensus 1196 G~vTSi~idp~~~-WlviGt--s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCN-WLVIGT--SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred cceeEEEecCCce-EEEEec--CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 8899999999766 666655 8999999999999999888664 5677777776554 34444355 7889999999
Q ss_pred CCceeeEEEeCC-------------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 391 PSMVKMAELSGH-------------------TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 391 ~~~~~~~~~~~h-------------------~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
.++.....+... .-......+..-+..+.+|+.|..|+.||.......
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 988665555322 111122233334568899999999999999876655
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=3.4e-12 Score=113.08 Aligned_cols=273 Identities=15% Similarity=0.195 Sum_probs=189.3
Q ss_pred eeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEE-EecC------CeEEEEeCCCceee
Q 012679 147 LDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-GLNN------CQVQLWDSTANRQL 218 (458)
Q Consensus 147 ~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~-g~~d------g~v~iwd~~~~~~~ 218 (458)
++|+. ...++++.+.-.+||+.+--+...........-.+..+-| ..++||. |+.+ ..|.|||-...+++
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k~~~i 88 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLKERCI 88 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecccCcEE
Confidence 78887 5699999999999999875332111111111122222222 3445544 4333 37999997777888
Q ss_pred EEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEc--ccccceEeEEEcCCCCEEEEE-ECCCcEEEEe
Q 012679 219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYR--GHNQEVCGLKWSASGQQLASG-GNDNLLHIWD 295 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~sg-~~dg~i~iwd 295 (458)
.++. ...+|.++......|++.-. +.|+||.....-+.+..+. ......|+++-+.+..+||.= -.-|.|+|-|
T Consensus 89 ~el~--f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 89 IELS--FNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD 165 (346)
T ss_pred EEEE--eccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence 8887 78899999999888877754 6899999875544344333 223346666555455566553 3569999999
Q ss_pred CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe-EEEEECCCCCeeEEEeCC---CCeEEEEEcCCC
Q 012679 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC-IKFWNTHTGACLNSVDTG---SQVCALLWNKNE 371 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~-i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~ 371 (458)
+...... ....+.+|...|.|++.+-+ +.++|+++ ..|+ ||+||..+|+.+..+..+ ..|.+++|+|+.
T Consensus 166 L~~~~~~----~p~~I~AH~s~Iacv~Ln~~-Gt~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 166 LASTKPN----APSIINAHDSDIACVALNLQ-GTLVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred hhhcCcC----CceEEEcccCceeEEEEcCC-ccEEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 8876542 13567899999999999985 67888876 6665 899999999999999765 469999999999
Q ss_pred CeEEEEecCCCCcEEEEeCCCce---e---------------------eEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 012679 372 RELLSSHGFTQNQLTLWKYPSMV---K---------------------MAELSGHTSRVLFMAQSPDGCTVASAAADETL 427 (458)
Q Consensus 372 ~~l~~~~g~~d~~i~iwd~~~~~---~---------------------~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i 427 (458)
.+|++++ +.|+|.||.+.... . +..+.-..+...-++|..+.+.++..+.||+-
T Consensus 239 s~LavsS--dKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy 316 (346)
T KOG2111|consen 239 SWLAVSS--DKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY 316 (346)
T ss_pred cEEEEEc--CCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence 9999965 89999999875422 1 11122223455567787776778888889876
Q ss_pred EEEecC
Q 012679 428 RFWNVF 433 (458)
Q Consensus 428 ~iW~~~ 433 (458)
+=+.+.
T Consensus 317 ~k~~f~ 322 (346)
T KOG2111|consen 317 YKFKFD 322 (346)
T ss_pred EEEEec
Confidence 655443
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=9.2e-16 Score=141.49 Aligned_cols=259 Identities=18% Similarity=0.213 Sum_probs=199.9
Q ss_pred eeecc--CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679 146 LLDWG--SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG 223 (458)
Q Consensus 146 ~~~~~--~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~ 223 (458)
.++++ +..++.++.-|.|-.+|..++++ .+.+.- ...|.++.|-.+.+++|++-.. .++||| ..|..++.+.
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~-y~yvYD-~~GtElHClk- 207 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINV-METVRDVTFLHNEQFFAVAQKK-YVYVYD-NNGTELHCLK- 207 (545)
T ss_pred eeeecCCccEEEecCCccceeeeeccccee--eeeeeh-hhhhhhhhhhcchHHHHhhhhc-eEEEec-CCCcEEeehh-
Confidence 34554 45699999999999999999987 444432 4569999999999999988554 899999 5677777777
Q ss_pred CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 224 GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 224 ~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
...+|..+.|= --+|++++..|.+..-|+.+++. +..+..-.+.+..++-+|-+..+-+|...|+|.+|.......
T Consensus 208 -~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl-Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 -RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL-VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred -hcCchhhhcccchhheeeecccCCceEEEeechhhh-hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 55678888884 46788889999999999998874 566666678888899999999999999999999999888766
Q ss_pred CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC
Q 012679 302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT 381 (458)
Q Consensus 302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~ 381 (458)
+..+..|.++|.+|++.+.|.++ ++.| .|+.++|||+++...+.++........+++|..|...++ .
T Consensus 286 ------LvKiLcH~g~V~siAv~~~G~YM-aTtG--~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~----~ 352 (545)
T KOG1272|consen 286 ------LVKILCHRGPVSSIAVDRGGRYM-ATTG--LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALS----Y 352 (545)
T ss_pred ------HHHHHhcCCCcceEEECCCCcEE-eecc--cccceeEeeeccccccceeecCCCccccccccccceeee----c
Confidence 78888999999999999965554 5554 899999999999998888888788888888877654443 3
Q ss_pred CCcEEEEeCC-C--ceeeEEEeCC--CCcEEEEEEcCCCCEEEEEeCCC
Q 012679 382 QNQLTLWKYP-S--MVKMAELSGH--TSRVLFMAQSPDGCTVASAAADE 425 (458)
Q Consensus 382 d~~i~iwd~~-~--~~~~~~~~~h--~~~V~~l~~spdg~~l~s~s~Dg 425 (458)
...+.||.-. . +..-.-+..| .+.|..+.|.|-...|-.|-.-|
T Consensus 353 G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 353 GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4578999632 1 1111122223 35799999999655555554444
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=7.3e-13 Score=131.57 Aligned_cols=219 Identities=13% Similarity=0.095 Sum_probs=151.8
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeC---CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGM---DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~ 280 (458)
.|.++|.... ..+.+.. |...+.+.+| +++.|+..+. +..|++||+.++.. ..+..+.+.+....|+|||+
T Consensus 183 ~l~~~d~dg~-~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 183 RLAIMDQDGA-NVRYLTD-GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred EEEEECCCCC-CcEEEec-CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 7888997544 3445554 7788999999 5677777653 46899999987653 34455666778899999999
Q ss_pred EEE-EEECCCc--EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679 281 QLA-SGGNDNL--LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357 (458)
Q Consensus 281 ~l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~ 357 (458)
.|+ +.+.++. |++||+.++. ...+..+........|+|++..++++.....+..|++||+.+++......
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~-------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~ 331 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGT-------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF 331 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCc-------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec
Confidence 876 4555554 7777887654 34455566667789999999888876542234578899988776554444
Q ss_pred CCCCeEEEEEcCCCCeEEEEecC-CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC------CcEEEE
Q 012679 358 TGSQVCALLWNKNERELLSSHGF-TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD------ETLRFW 430 (458)
Q Consensus 358 ~~~~v~~~~~s~~~~~l~~~~g~-~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D------g~i~iW 430 (458)
....+....|+|+|+.|+.+... ....|.+||...+.. ..+. ....+....|+|||+.|+..+.+ ..|.+.
T Consensus 332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 45567778999999999886532 224688888765443 2332 22346788999999998776543 257777
Q ss_pred ecCCCCc
Q 012679 431 NVFGAPQ 437 (458)
Q Consensus 431 ~~~~~~~ 437 (458)
++.+...
T Consensus 410 dl~g~~~ 416 (435)
T PRK05137 410 DLTGRNE 416 (435)
T ss_pred ECCCCce
Confidence 8765443
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=6.3e-13 Score=131.89 Aligned_cols=216 Identities=17% Similarity=0.152 Sum_probs=147.9
Q ss_pred CeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC---CcEEEEEccCCCeeEEEEcccccceEeEEEcCCC
Q 012679 205 CQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD---GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279 (458)
Q Consensus 205 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~ 279 (458)
..|.+||.... ..+.+.. +...+.+.+| +++.|+..+.+ ..|++||+.++.. ..+..+.+...++.|+|||
T Consensus 184 ~~l~i~D~~g~-~~~~lt~-~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSDGY-NPQTILR-SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCCCC-CceEeec-CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCC
Confidence 36899998644 3444554 6778889999 46777777643 4699999987653 2333444555678999999
Q ss_pred CEEE-EEECCC--cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC--eEEEEECCCCCeeE
Q 012679 280 QQLA-SGGNDN--LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR--CIKFWNTHTGACLN 354 (458)
Q Consensus 280 ~~l~-sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~~~~ 354 (458)
+.|+ +.+.+| .|++||+.++.. ..+..+.......+|+|++..++++.. .++ .|+++|+.+++...
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~-------~~lt~~~~~~~~~~~spDG~~l~f~sd--~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQL-------TRLTNHFGIDTEPTWAPDGKSIYFTSD--RGGRPQIYRVAASGGSAER 330 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCe-------EECccCCCCccceEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEE
Confidence 9876 445555 599999877643 445555555678899999888887754 333 47777887776544
Q ss_pred EEeCCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC---CcEEEE
Q 012679 355 SVDTGSQVCALLWNKNERELLSSHGFT-QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD---ETLRFW 430 (458)
Q Consensus 355 ~~~~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---g~i~iW 430 (458)
....+.......|+|+|+.++.+.+.. ...|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++
T Consensus 331 lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 331 LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 333344455789999999998865422 236999999877654 333 22344567999999988877653 357777
Q ss_pred ecCCC
Q 012679 431 NVFGA 435 (458)
Q Consensus 431 ~~~~~ 435 (458)
++.+.
T Consensus 409 ~~~g~ 413 (433)
T PRK04922 409 STDGR 413 (433)
T ss_pred ECCCC
Confidence 77543
No 222
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=6.8e-13 Score=125.67 Aligned_cols=281 Identities=14% Similarity=0.225 Sum_probs=187.0
Q ss_pred cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-----ec-----CCeEEEEeC
Q 012679 144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-----LN-----NCQVQLWDS 212 (458)
Q Consensus 144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-----~~-----dg~v~iwd~ 212 (458)
++....++ +++++.+.++.+.|++..++.. +.+... . .++++.|+|-|.+|.+- .. .-.+++|++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~--~lt~~~-~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKV--VLCVEL-K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcE--EEEecc-c-eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 44455554 7899999999999999998863 333332 2 68999999999998762 11 235889999
Q ss_pred CCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC--EEEE-----
Q 012679 213 TANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ--QLAS----- 284 (458)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~--~l~s----- 284 (458)
+++.....+....... ++..|. ...|++--..+.+++|++.....+... -|...|+.+.+||.+. .+|+
T Consensus 113 et~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 113 ETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred ccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEEccCC
Confidence 9966555555322222 577775 344444445678999999875543333 3578899999999633 3433
Q ss_pred EECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---------CCeEEEEECCCCCeeEE
Q 012679 285 GGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---------DRCIKFWNTHTGACLNS 355 (458)
Q Consensus 285 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---------d~~i~lwd~~~~~~~~~ 355 (458)
+|.-..|+||.+.......... ...| ..+.-..+.|.+-+..||+..+..- +.++++.++....+...
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a-~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~ 266 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVA-NKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP 266 (566)
T ss_pred CCCCcEEEEeccccccccchhh-hccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe
Confidence 4556789999876332211111 1111 1223346788887777666553222 34688888885566666
Q ss_pred EeCCCCeEEEEEcCCCCeEEEEecCC------------------------------------------CCcEEEEeCCCc
Q 012679 356 VDTGSQVCALLWNKNERELLSSHGFT------------------------------------------QNQLTLWKYPSM 393 (458)
Q Consensus 356 ~~~~~~v~~~~~s~~~~~l~~~~g~~------------------------------------------d~~i~iwd~~~~ 393 (458)
+...++|.++.|++++++++++.|+. .|.+.|||+.+.
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 66677777777777777666655443 577788888887
Q ss_pred eeeEEEeCCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEecCCCC
Q 012679 394 VKMAELSGHTSRVLFMAQSPDGCTVASAAA------DETLRFWNVFGAP 436 (458)
Q Consensus 394 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~------Dg~i~iW~~~~~~ 436 (458)
+++..+..... +-+.|+|||++++|++. |+.++||+..+..
T Consensus 347 K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 347 KLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred hhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 77777765443 45799999999998874 7889999987543
No 223
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.60 E-value=2.4e-11 Score=116.79 Aligned_cols=275 Identities=13% Similarity=0.160 Sum_probs=184.6
Q ss_pred eEEEEcC----CEEEEEEC--CCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----CCeEEEEeCCCc--e--eeE
Q 012679 154 VLAIALG----STVYLWDA--SDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----NCQVQLWDSTAN--R--QLR 219 (458)
Q Consensus 154 ~la~~~d----~~v~iwd~--~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----dg~v~iwd~~~~--~--~~~ 219 (458)
+++++.. +.|++|++ +++++..+.... .......++++|++++|.+... +|.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4555555 68998887 677766555543 2456788999999999999876 568999987764 2 333
Q ss_pred EecCCCcccEEEEEe--CCCeEEEEe-CCCcEEEEEccCCCeeEEE--Ec-----------ccccceEeEEEcCCCCEEE
Q 012679 220 TLRGGHRSRVGSLAW--NNHILTTGG-MDGLIINNDVRVRDHIVET--YR-----------GHNQEVCGLKWSASGQQLA 283 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~~~--~~-----------~h~~~v~~l~~spd~~~l~ 283 (458)
.... .......++. ++.+|+++. .+|.|.++++.....+... .. .......++.|+|++++++
T Consensus 81 ~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 81 SVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 3332 2334455666 577777775 5899999999875543222 11 1234567899999999888
Q ss_pred EEEC-CCcEEEEeCCCCCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC--CCC--eeEEEe
Q 012679 284 SGGN-DNLLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH--TGA--CLNSVD 357 (458)
Q Consensus 284 sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~--~~~--~~~~~~ 357 (458)
+... ...|.+|++....... .....+. .....-+.++|+|++..++++.. .++.|.++++. ++. .+..+.
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l--~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKL--TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TE--EEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEE
T ss_pred EEecCCCEEEEEEEeCCCceE--EEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEee
Confidence 7653 4579999987765311 1112221 33456789999999999888876 88999999988 443 233332
Q ss_pred C-------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC----CceeeEEEeCCCCcEEEEEEcCCCCEEEEEe-CCC
Q 012679 358 T-------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP----SMVKMAELSGHTSRVLFMAQSPDGCTVASAA-ADE 425 (458)
Q Consensus 358 ~-------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~----~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg 425 (458)
. ......+.++|++++|+++.. ..+.|.+|++. ..+.+..+.........++++|+|++|+++. .++
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr-~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNR-GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEEC-TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred eccccccccCCceeEEEecCCCEEEEEec-cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 2 125788999999999999754 57899999993 2344555544445588999999999998887 467
Q ss_pred cEEEEecCCC
Q 012679 426 TLRFWNVFGA 435 (458)
Q Consensus 426 ~i~iW~~~~~ 435 (458)
.|.+|++...
T Consensus 315 ~v~vf~~d~~ 324 (345)
T PF10282_consen 315 TVSVFDIDPD 324 (345)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEEeCC
Confidence 8999988643
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.6e-13 Score=124.40 Aligned_cols=254 Identities=15% Similarity=0.134 Sum_probs=181.4
Q ss_pred CCCCEEEEEEcCCCC--EEEEEecCCeEEEEeCCCceeeEEe-----cCCCcccEEEEEeCCCeEEEEeCCCcEEEEEcc
Q 012679 182 ENGPVTSVNWAPDGR--HIAIGLNNCQVQLWDSTANRQLRTL-----RGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR 254 (458)
Q Consensus 182 h~~~V~~v~~s~~g~--~la~g~~dg~v~iwd~~~~~~~~~~-----~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 254 (458)
....|+.++|.-+++ .|...+.+-.+..+++........+ .......|..++.....|++|-.+|.+.+|...
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 345677788876543 3444435656777776665544442 112556777777777888899999999999988
Q ss_pred CCC---eeEEEEcccccceEeEEEcCCCC-EEEEEECC--CcEEEEeCCCCCCCCcceeee--eec-ccccceeEEEecC
Q 012679 255 VRD---HIVETYRGHNQEVCGLKWSASGQ-QLASGGND--NLLHIWDRSMASSNSVTQWLH--RLE-EHTSAVKAIAWCP 325 (458)
Q Consensus 255 ~~~---~~~~~~~~h~~~v~~l~~spd~~-~l~sg~~d--g~i~iwd~~~~~~~~~~~~~~--~~~-~h~~~v~~l~~~p 325 (458)
.+. .....+..+ ..+..+.-++... .+|+||.. +.+.|||+.........+.+. .+. .-.-.++++.|-+
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 543 112223222 4566666666544 55669988 899999998774311100000 000 0122456788877
Q ss_pred C-CCcEEEEeCCCCCCeEEEEECCCCC-eeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE-EeC
Q 012679 326 F-QSNLLATGGGGGDRCIKFWNTHTGA-CLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE-LSG 401 (458)
Q Consensus 326 ~-~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~-~~~ 401 (458)
. -.+.|+++. .-+.+++||.+.+. ++.+++. ...++++...|.++.+++ |...+.+..||.+.+..... +.+
T Consensus 213 g~~~~~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~--gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 213 GSPNYKFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT--GNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred CCCCceEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE--ecccchhheecccCceeeccccCC
Confidence 3 167778876 78999999999864 6777765 578999999999999999 67899999999999998877 889
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 402 HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 402 h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
-.+.|.+|..+|.+++|+++|-|..|||+|+.+...+.+
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 999999999999999999999999999999998555444
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=6.8e-15 Score=135.83 Aligned_cols=229 Identities=11% Similarity=0.244 Sum_probs=187.0
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEE
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETY 263 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 263 (458)
.-+.+.++.+|++|+.|+..|.|..+|..+++....+. -...|.++.| ++..+++......++|||-..-+ +..+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE--lHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE--LHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE--Eeeh
Confidence 35789999999999999999999999999999988887 5677899999 56666666677889999965322 3444
Q ss_pred cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEE
Q 012679 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK 343 (458)
Q Consensus 264 ~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~ 343 (458)
+.| ..|..+.|-|..-+|++++..|.++.-|+..++. +..+....+.+..++-+|. +.++-+|. ..|+|.
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl------Va~~~t~~G~~~vm~qNP~-NaVih~Gh--snGtVS 276 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL------VASIRTGAGRTDVMKQNPY-NAVIHLGH--SNGTVS 276 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhh------hHHHHccCCccchhhcCCc-cceEEEcC--CCceEE
Confidence 443 5688999999999999999999999999999987 6677777788889999995 55666665 899999
Q ss_pred EEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679 344 FWNTHTGACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 344 lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 422 (458)
+|.....+++..+ .+.++|.++++.++|.++++++ .|..++|||++....+.++.. ..+...+++|..| ++.++
T Consensus 277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG--~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~ 351 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG--LDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALS 351 (545)
T ss_pred ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc--cccceeEeeeccccccceeec-CCCcccccccccc--ceeee
Confidence 9999988877655 5678999999999999999963 899999999999888777754 4566788998776 33345
Q ss_pred CCCcEEEEec
Q 012679 423 ADETLRFWNV 432 (458)
Q Consensus 423 ~Dg~i~iW~~ 432 (458)
....|.||.=
T Consensus 352 ~G~~v~iw~d 361 (545)
T KOG1272|consen 352 YGDHVQIWKD 361 (545)
T ss_pred cCCeeeeehh
Confidence 5568999963
No 226
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.4e-14 Score=131.04 Aligned_cols=192 Identities=16% Similarity=0.199 Sum_probs=137.3
Q ss_pred eeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec-
Q 012679 146 LLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR- 222 (458)
Q Consensus 146 ~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~- 222 (458)
+++++. ..+.+++.||+++||+..+-.. +.....|...|.++.|+|||+.|++-+.| ..+||+++++..+....
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t--~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLT--ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchh--hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 455554 5688888999999999776554 55666788999999999999999999999 89999999997776655
Q ss_pred CCCcccEEEEEe--CC---Ce--EEEEeCCCcEEEEEccCCCe----eEEEEcccccceEeEEEcCCCCEEEEEECCCcE
Q 012679 223 GGHRSRVGSLAW--NN---HI--LTTGGMDGLIINNDVRVRDH----IVETYRGHNQEVCGLKWSASGQQLASGGNDNLL 291 (458)
Q Consensus 223 ~~~~~~v~~l~~--~~---~~--l~sg~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i 291 (458)
.........+.| ++ .+ ++.....+.|..||+..... ...+...-...|.+++.++||+++|.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223334555666 22 22 22334456677766643322 111112223469999999999999999999999
Q ss_pred EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679 292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH 348 (458)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~ 348 (458)
-|++....+.. ...-+.|...|+.+.|+|+...+.-+. .|..+.+.-+.
T Consensus 306 ai~~~~~lq~~-----~~vk~aH~~~VT~ltF~Pdsr~~~svS---s~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRL-----QYVKEAHLGFVTGLTFSPDSRYLASVS---SDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeee-----EeehhhheeeeeeEEEcCCcCcccccc---cCCceeEEEEe
Confidence 99998876652 233457999999999999876666543 56666665543
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.8e-13 Score=124.08 Aligned_cols=215 Identities=15% Similarity=0.203 Sum_probs=171.1
Q ss_pred cCCCeEEEEcCCEEEEEECCCCC--eeeEEEecCCCCCEEEEEEcCCCC-EEEEEecC--CeEEEEeCCCceeeEEecCC
Q 012679 150 GSSNVLAIALGSTVYLWDASDGT--TSELVTVDDENGPVTSVNWAPDGR-HIAIGLNN--CQVQLWDSTANRQLRTLRGG 224 (458)
Q Consensus 150 ~~~~~la~~~d~~v~iwd~~~~~--~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~d--g~v~iwd~~~~~~~~~~~~~ 224 (458)
....++++-.+|.+.+|..+.+. -.++..+..+ ..+..|.-++... ++|+|+.. ..+.|||+++.+.+..-+..
T Consensus 114 ~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred cCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 34678889999999999988544 2224444433 4577888777544 55668888 78999999988766554321
Q ss_pred --------CcccEEEEEe-C---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 225 --------HRSRVGSLAW-N---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 225 --------~~~~v~~l~~-~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
-+-.++++.| . ...|++++.-+.+++||.+.+..++..+.--..+++++...|+++++++|..-|.+.
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA 272 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence 2234566777 2 478999999999999999999888888888889999999999999999999999999
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCC
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER 372 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~ 372 (458)
.||++.+... ...+.+..+.|.+|..+| +..+++++| -|+.+||+|+.+.+++..+...+.++.+.+.++-+
T Consensus 273 ~FD~r~~kl~-----g~~~kg~tGsirsih~hp-~~~~las~G--LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 273 KFDLRGGKLL-----GCGLKGITGSIRSIHCHP-THPVLASCG--LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVN 344 (412)
T ss_pred eecccCceee-----ccccCCccCCcceEEEcC-CCceEEeec--cceeEEEeecccchhhhhhhhhccccEEEecCCcc
Confidence 9999988762 334788899999999999 466778877 99999999999988888888888888888876544
Q ss_pred e
Q 012679 373 E 373 (458)
Q Consensus 373 ~ 373 (458)
.
T Consensus 345 ~ 345 (412)
T KOG3881|consen 345 I 345 (412)
T ss_pred c
Confidence 3
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=6e-12 Score=124.42 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=145.9
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEe---CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG---MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~ 280 (458)
.|.+||...... +.+.. +...+.+.+| +|+.|+..+ .+..|++||+.+++. ..+....+.+..+.|+|||+
T Consensus 180 ~l~~~d~dg~~~-~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eEEEEcCCCCCC-EEeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 689999875544 33433 6678888999 467777553 245799999987653 22333334455789999999
Q ss_pred EEEEE-ECCC--cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC--eEEEEECCCCCeeEE
Q 012679 281 QLASG-GNDN--LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR--CIKFWNTHTGACLNS 355 (458)
Q Consensus 281 ~l~sg-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~~~~~ 355 (458)
.|+.. +.+| .|++||+.++.. ..+..+...+....|+|++..++++.. .++ .|.++|+.+++....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~-------~~lt~~~~~~~~~~wSPDG~~I~f~s~--~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQI-------RQVTDGRSNNTEPTWFPDSQNLAYTSD--QAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCE-------EEccCCCCCcCceEECCCCCEEEEEeC--CCCCceEEEEECCCCCeEEe
Confidence 88865 4444 588999877643 344444556788999999888877754 333 456667777765443
Q ss_pred EeCCCCeEEEEEcCCCCeEEEEecC-CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCc---EEEEe
Q 012679 356 VDTGSQVCALLWNKNERELLSSHGF-TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADET---LRFWN 431 (458)
Q Consensus 356 ~~~~~~v~~~~~s~~~~~l~~~~g~-~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~---i~iW~ 431 (458)
...........|+|+|+.++.+... ....|.+||+.+++.. .+... .......|+|||++|+.++.|+. +.+++
T Consensus 327 t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 327 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 3334456678999999999876432 2246888999877643 33321 22346789999999999998865 67777
Q ss_pred cCCCC
Q 012679 432 VFGAP 436 (458)
Q Consensus 432 ~~~~~ 436 (458)
+.+..
T Consensus 405 ~~G~~ 409 (429)
T PRK03629 405 TDGRF 409 (429)
T ss_pred CCCCC
Confidence 75443
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=2e-13 Score=121.15 Aligned_cols=268 Identities=17% Similarity=0.339 Sum_probs=174.6
Q ss_pred ceeeccCC--C-eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeEE
Q 012679 145 NLLDWGSS--N-VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 145 ~~~~~~~~--~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.-+.|.-+ . +.+...++.|.+|++...+. .+.+.....++.++.|||||+.| .+..-+-.|.||.+.+.+....
T Consensus 52 ~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 52 VYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred hheeeeccceeeeeeeeccceEEEEEeeccee--EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 34566542 3 44445578999999998877 67777778899999999999655 4555678999999988776544
Q ss_pred ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679 221 LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~ 296 (458)
-.. ...+..++| ++.+.+..++-...-.+.+...+ .+.+.+.-.+...+++.|+|||+.||+ ||.
T Consensus 130 ~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~ 198 (447)
T KOG4497|consen 130 PHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDN 198 (447)
T ss_pred ccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecc
Confidence 332 233455666 56777766653211111111000 122334444566788899998877664 442
Q ss_pred CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE---------------------
Q 012679 297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS--------------------- 355 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~--------------------- 355 (458)
--.-. +..+ ...-.+..++|+| .+.+++.|+ .|+.+|+.|--+.+....
T Consensus 199 ~Leyk------v~aY-e~~lG~k~v~wsP-~~qflavGs--yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 199 VLEYK------VYAY-ERGLGLKFVEWSP-CNQFLAVGS--YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred hhhhe------eeee-eeccceeEEEecc-ccceEEeec--cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 11110 1111 1234577888888 466777766 888887766433221100
Q ss_pred ---------------------------------------Ee-------CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679 356 ---------------------------------------VD-------TGSQVCALLWNKNERELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 356 ---------------------------------------~~-------~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd 389 (458)
++ ....+.-++|++|..++++.....-+.+-+||
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wd 348 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWD 348 (447)
T ss_pred hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEe
Confidence 00 01125678999999999987665667899999
Q ss_pred CCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 390 ~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
+...+.-..+. ...+|....|.|....|+.+.....+++|......
T Consensus 349 lq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 349 LQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred chhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 98877655553 45789999999998888888888889999887643
No 230
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=7.4e-13 Score=115.78 Aligned_cols=142 Identities=15% Similarity=0.312 Sum_probs=105.8
Q ss_pred CcEEEEEccCCCeeEEEEcc-cccceEeEEEcCCCCEEEEE--ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEE
Q 012679 246 GLIINNDVRVRDHIVETYRG-HNQEVCGLKWSASGQQLASG--GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA 322 (458)
Q Consensus 246 g~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~ 322 (458)
|...+|.++........+.- ..++|.+++|+|+|+.||+. ..++.|.+||++. .. +..+ +...+..+.
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~~------i~~~--~~~~~n~i~ 107 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-KK------IFSF--GTQPRNTIS 107 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-cE------eEee--cCCCceEEE
Confidence 34556666544433444432 34579999999999998655 3567999999962 22 4454 356778999
Q ss_pred ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC----CCCcEEEEeCCCceeeEE
Q 012679 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF----TQNQLTLWKYPSMVKMAE 398 (458)
Q Consensus 323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~----~d~~i~iwd~~~~~~~~~ 398 (458)
|+|+|..++++|.|...|.|.+||.++.+.+....+. .++.++|+|+|++++++... .|+.++||++. |+.+.+
T Consensus 108 wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 108 WSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 9999888888776667789999999999988887655 47899999999999998643 48899999984 555544
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=5.3e-13 Score=126.49 Aligned_cols=246 Identities=16% Similarity=0.227 Sum_probs=178.7
Q ss_pred CCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeEE--ec--------------------------C------CC
Q 012679 181 DENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRT--LR--------------------------G------GH 225 (458)
Q Consensus 181 ~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~~--~~--------------------------~------~~ 225 (458)
++...-+.|..+|||+|+ |+|...-.|++||+........ +. . .+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 456778899999999986 6677888999999875432111 00 0 01
Q ss_pred cccEE----EEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 012679 226 RSRVG----SLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA 299 (458)
Q Consensus 226 ~~~v~----~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~ 299 (458)
.-+|. .++++ ..-|++++....|+-++++.+.. +..+....+.++++..++-..+|++|+.+|.|..||.+..
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf-L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF-LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEcccccc-ccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 11222 22222 23355556666788888886653 5677777789999999999999999999999999999887
Q ss_pred CCCCcceeeeeeccccc-----ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcCC--
Q 012679 300 SSNSVTQWLHRLEEHTS-----AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKN-- 370 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~-----~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~~-- 370 (458)
...........+..|.+ .|+++.|+.+ +.-+++|. .+|.+.|||+++.+++..-++. .+|..+.|.+.
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGT--STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCC-ceeEEeec--cCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 65332222223333433 4999999986 45556654 9999999999999998877764 46889999776
Q ss_pred CCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
.+.+++. +...++|||-.+++....+.. +..+..+++-|++-+++++-.++.+..|-+..
T Consensus 285 q~~v~S~---Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 285 QNKVVSM---DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CceEEec---chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 3445542 577899999999999988874 44599999999999999999988887776643
No 232
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=7e-13 Score=118.41 Aligned_cols=245 Identities=13% Similarity=0.254 Sum_probs=177.0
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-----eeEEecCCC------------cccEEEEEe----CCCeEEE
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-----QLRTLRGGH------------RSRVGSLAW----NNHILTT 241 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~~v~~l~~----~~~~l~s 241 (458)
.+-|.+|.|..+|.+||+|..+|.|.++.-.... ....++. | ...|..+.| +...++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqs-hepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQS-HEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeec-cCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 4568999999999999999999999999643322 1222222 3 346778888 3567888
Q ss_pred EeCCCcEEEEEccCCCee----------------------------------EEE-EcccccceEeEEEcCCCCEEEEEE
Q 012679 242 GGMDGLIINNDVRVRDHI----------------------------------VET-YRGHNQEVCGLKWSASGQQLASGG 286 (458)
Q Consensus 242 g~~dg~i~vwd~~~~~~~----------------------------------~~~-~~~h~~~v~~l~~spd~~~l~sg~ 286 (458)
.+.|.+|++|.++..... .+. -.+|...|+++.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 889999999987643210 011 13688889999999999988887
Q ss_pred CCCcEEEEeCCCCCCCCcceeeeeecc-----cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE----Ee
Q 012679 287 NDNLLHIWDRSMASSNSVTQWLHRLEE-----HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS----VD 357 (458)
Q Consensus 287 ~dg~i~iwd~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~----~~ 357 (458)
.|-.|.+|++........ +..++. -..-|++..|+|...++++-.+ ..|+|++-|++....... +.
T Consensus 183 DdLRINLWnlei~d~sFn---IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFN---IVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred cceeeeeccccccCCcee---EEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhc
Confidence 568899999876544211 222332 3456899999999888888766 899999999985432111 10
Q ss_pred -------------CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC-CceeeEEEeCCC------------CcE---EE
Q 012679 358 -------------TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP-SMVKMAELSGHT------------SRV---LF 408 (458)
Q Consensus 358 -------------~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~-~~~~~~~~~~h~------------~~V---~~ 408 (458)
.-+.|..+.|+++|+++++- +-.+|++||+. ..+++.++.-|. ..| ..
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsR---Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSR---DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEe---ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 11347889999999999983 33789999994 566677766553 112 45
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679 409 MAQSPDGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 409 l~~spdg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
++|+-++.+++||+....++++++..+..
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EEEcCCcceEecccccceEEEecCCCCcc
Confidence 78999999999999999999999765543
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=6e-12 Score=124.80 Aligned_cols=234 Identities=16% Similarity=0.145 Sum_probs=150.0
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEeCCCceeeEEecCCCcccEEEEEe--CC
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---CQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NN 236 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~ 236 (458)
.|+++|...+.... +..+...+.+.+|+|||++|+.+... ..|++||+.+++...... +...+.+++| ++
T Consensus 171 ~l~~~d~~g~~~~~---l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~~~~spDg 245 (417)
T TIGR02800 171 ELQVADYDGANPQT---ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGAPAFSPDG 245 (417)
T ss_pred eEEEEcCCCCCCEE---eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccceEECCCC
Confidence 68999987655433 33456678999999999999988654 479999999886543332 4455666788 45
Q ss_pred CeEE-EEeCCC--cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC-C--cEEEEeCCCCCCCCcceeeee
Q 012679 237 HILT-TGGMDG--LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND-N--LLHIWDRSMASSNSVTQWLHR 310 (458)
Q Consensus 237 ~~l~-sg~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~ 310 (458)
+.|+ +.+.++ .|++||+.++. ...+..+........|+|||+.|+..+.. + .|+++|+..+.. ..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-------~~ 316 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-------RR 316 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-------EE
Confidence 6554 455554 58888887654 34444455555678999999998876653 3 577788765432 33
Q ss_pred ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCC-CcEEEEe
Q 012679 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ-NQLTLWK 389 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d-~~i~iwd 389 (458)
+..+...+...+|+|++..++++........|.+||+.++... .+..........|+|+++.|+.+..... ..+.+.+
T Consensus 317 l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 317 LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 4444566778899999888877764111237899999886543 3332333456689999999887653221 2355555
Q ss_pred CCCceeeEEEeCCCCcEEEEEE
Q 012679 390 YPSMVKMAELSGHTSRVLFMAQ 411 (458)
Q Consensus 390 ~~~~~~~~~~~~h~~~V~~l~~ 411 (458)
.. +.....+..+.+.+..++|
T Consensus 396 ~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 396 TD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CC-CceeeECCCCCCCcCCCCC
Confidence 33 3344444433444444443
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.1e-11 Score=123.27 Aligned_cols=236 Identities=16% Similarity=0.119 Sum_probs=151.5
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEeCCCceeeEEecCCCcccEEEEEe--CC
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---CQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NN 236 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~ 236 (458)
.|.++|.+.+... .+..+...+....|+|||+.|+..+.+ ..|.+||+.+++.... .. ....+....| ++
T Consensus 180 ~l~~~d~~g~~~~---~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~-~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGARAV---TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TN-FEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCCce---EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cC-CCCCcCCeEECCCC
Confidence 5888888766542 333456789999999999999887644 3699999988865432 22 3334456778 46
Q ss_pred CeEE-EEeCCC--cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CC--cEEEEeCCCCCCCCcceeeee
Q 012679 237 HILT-TGGMDG--LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN--LLHIWDRSMASSNSVTQWLHR 310 (458)
Q Consensus 237 ~~l~-sg~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~ 310 (458)
+.|+ +.+.+| .|+++|+.++.. ..+..+........|+|||+.|+..+. +| .|+++|+..+.. ..
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-------~~ 325 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-------ER 325 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-------EE
Confidence 6665 555555 688889887652 345555556677899999998877664 33 577778766543 11
Q ss_pred ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEe
Q 012679 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT-QNQLTLWK 389 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd 389 (458)
+..........+|+|++..++++........|.+||+.+++... +..........|+|+|+.++.+.... ...|.+++
T Consensus 326 lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 326 VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 11112233457899999888877641122368899999887543 32222334568999999998765321 23466777
Q ss_pred CCCceeeEEEeCCCCcEEEEEEcC
Q 012679 390 YPSMVKMAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 390 ~~~~~~~~~~~~h~~~V~~l~~sp 413 (458)
... .....+..+.+.+...+|+|
T Consensus 405 ~~g-~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 405 ING-RVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCC-CceEECcCCCCCcCCCccCC
Confidence 643 33334544555667777776
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.53 E-value=1.1e-11 Score=119.10 Aligned_cols=245 Identities=13% Similarity=0.142 Sum_probs=160.3
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeEEecCC------
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLRTLRGG------ 224 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~~------ 224 (458)
..+++.+.||.|.++|+.+++. +.++.. .....++++++||++++++. ..+.+.|+|.++.+.++.+..+
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~--v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~ 125 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKV--VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG 125 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSE--EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT
T ss_pred CEEEEEcCCCeEEEEECCcccE--EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc
Confidence 4577778899999999999987 555543 34578999999999998875 6889999999999999887642
Q ss_pred CcccEEEEEe--CCC-eEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE-ECCCcEEEEeCCCCC
Q 012679 225 HRSRVGSLAW--NNH-ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG-GNDNLLHIWDRSMAS 300 (458)
Q Consensus 225 ~~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg-~~dg~i~iwd~~~~~ 300 (458)
...++..+.. ... ++++.-..+.|.+.|......+...............|+|++++++.+ ..++.|-++|..+..
T Consensus 126 ~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 126 PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 2346666655 234 455555568898889876654443443445567788999999988665 446677788866543
Q ss_pred CCCc-------------------------------------------------ceeeeeecccccceeEEEecCCCCcEE
Q 012679 301 SNSV-------------------------------------------------TQWLHRLEEHTSAVKAIAWCPFQSNLL 331 (458)
Q Consensus 301 ~~~~-------------------------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~ll 331 (458)
.... .+.+.++...... ..+..+|++.++.
T Consensus 206 ~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vw 284 (369)
T PF02239_consen 206 LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVW 284 (369)
T ss_dssp EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEE
T ss_pred EEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEE
Confidence 2100 0001112222222 4567789888888
Q ss_pred EE-eCCCCCCeEEEEECCCCCeeEEEeCCC--CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe
Q 012679 332 AT-GGGGGDRCIKFWNTHTGACLNSVDTGS--QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS 400 (458)
Q Consensus 332 ~s-~~g~~d~~i~lwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~ 400 (458)
+. ..+...+.|.++|.++.+.+.++.... .+..+.|+++|+++.++....++.|.|||..+.+.+.++.
T Consensus 285 vd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 285 VDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred eeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 76 112256899999999998888876543 4999999999999999887777799999999999998886
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=1.8e-13 Score=121.45 Aligned_cols=220 Identities=17% Similarity=0.231 Sum_probs=155.4
Q ss_pred eeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCC
Q 012679 147 LDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGG 224 (458)
Q Consensus 147 ~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~ 224 (458)
..+++ ++.+|...+..+.|-|.++-++.+++.. -+.|.-+.|..|..+++++ ..++.|++|++...+-...+..
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde- 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE- 89 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH---HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc-
Confidence 34555 6788888888999999988877555544 3468889999988776554 6788999999999998888887
Q ss_pred CcccEEEEEeC--C-CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 225 HRSRVGSLAWN--N-HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 225 ~~~~v~~l~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
..+.+.+++|+ | ++|.+...+-.|.+|.+.+........ ....+.+++|+|||++.+.++.-.....+.+...+.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 77889999994 4 678888889999999998766432222 234568899999999999888642222222211110
Q ss_pred CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC
Q 012679 302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT 381 (458)
Q Consensus 302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~ 381 (458)
...+..+.-.+-..+.+.|+|+|..+. +||.--.-.+..+..+-.+..+.|+|.++++++ |+.
T Consensus 168 ---W~ll~~f~~dT~DltgieWsPdg~~la------------Vwd~~Leykv~aYe~~lG~k~v~wsP~~qflav--Gsy 230 (447)
T KOG4497|consen 168 ---WILLKEFKLDTIDLTGIEWSPDGNWLA------------VWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAV--GSY 230 (447)
T ss_pred ---HHHHHhcCCCcccccCceECCCCcEEE------------EecchhhheeeeeeeccceeEEEeccccceEEe--ecc
Confidence 111334444555678899999755443 454333333334455566788899999999998 778
Q ss_pred CCcEEEEe
Q 012679 382 QNQLTLWK 389 (458)
Q Consensus 382 d~~i~iwd 389 (458)
|+.++|.+
T Consensus 231 D~~lrvln 238 (447)
T KOG4497|consen 231 DQMLRVLN 238 (447)
T ss_pred chhhhhhc
Confidence 98888754
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=1.7e-13 Score=128.80 Aligned_cols=166 Identities=20% Similarity=0.350 Sum_probs=124.2
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecC--CCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCC--------------
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDD--ENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTA-------------- 214 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~--h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~-------------- 214 (458)
-.++.+-.-|.|++.|....+...++.... ....|+|+.|-| +...++++-.+|.+++||...
T Consensus 186 ~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~ 265 (636)
T KOG2394|consen 186 LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD 265 (636)
T ss_pred cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence 347777778899998876644433332221 246899999999 445677788999999997531
Q ss_pred ceeeE--------------EecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC
Q 012679 215 NRQLR--------------TLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS 278 (458)
Q Consensus 215 ~~~~~--------------~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd 278 (458)
+.... .+.. -...|..++| ++.+|++.+.||.++|+|..+.. ++..++..-+...|++||||
T Consensus 266 ~~~f~i~t~ksk~~rNPv~~w~~-~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPD 343 (636)
T KOG2394|consen 266 GDQFAILTSKSKKTRNPVARWHI-GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPD 343 (636)
T ss_pred CCeeEEeeeeccccCCccceeEe-ccccccceeEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCC
Confidence 11111 1111 2235666666 58999999999999999998654 35555666678999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679 279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325 (458)
Q Consensus 279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 325 (458)
|++|++|++|..|.||.+...+. +..-++|...|..++|.|
T Consensus 344 GKyIvtGGEDDLVtVwSf~erRV------VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFEERRV------VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccEEEecCCcceEEEEEeccceE------EEeccccccceeeEeecc
Confidence 99999999999999999988776 788889999999999984
No 238
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.51 E-value=2.6e-13 Score=131.96 Aligned_cols=284 Identities=17% Similarity=0.271 Sum_probs=202.4
Q ss_pred cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC--CCEEEEEecCCeEEEEeCCC--ceee
Q 012679 144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTA--NRQL 218 (458)
Q Consensus 144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~--g~~la~g~~dg~v~iwd~~~--~~~~ 218 (458)
++.+..++ ++-++.+....+++.|+...-..+..-.....-.|-.+.|+|. -.+-++......-.+|++.. ...+
T Consensus 27 ~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI 106 (1081)
T KOG0309|consen 27 FNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI 106 (1081)
T ss_pred ccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccce
Confidence 44444444 3334444455677778775433222222222345788899874 34556666666788998753 3344
Q ss_pred EEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679 219 RTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd 295 (458)
.-+.-+|...|+.+.|+ +..+++++.|..+..||++.....+.....-......++|+.....+.+.+..+.|.+||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 44444599999999995 589999999999999999998877776666566677899998666666667888999999
Q ss_pred CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC--CeeEEEeCCCCeEEEEEcCCCCe
Q 012679 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG--ACLNSVDTGSQVCALLWNKNERE 373 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~--~~~~~~~~~~~v~~~~~s~~~~~ 373 (458)
.+.+..+ +..+++|...|..++|.......+.+++ .|++|++||.... +....+.+..++..-.+-|-|.-
T Consensus 187 ~r~gs~p-----l~s~K~~vs~vn~~~fnr~~~s~~~s~~--~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 187 LRKGSTP-----LCSLKGHVSSVNSIDFNRFKYSEIMSSS--NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred ccCCCcc-----eEEecccceeeehHHHhhhhhhhhcccC--CCCceeeecccccccccceeccccCcceeccccccCce
Confidence 9988753 7888899999999999887666777766 9999999998754 45566677788888888887665
Q ss_pred EEEEecCCCCcEEEEeC---------C-CceeeEEEeCCCCcEEEEEEcCCC----------CEEEEEeCCCcEEEEecC
Q 012679 374 LLSSHGFTQNQLTLWKY---------P-SMVKMAELSGHTSRVLFMAQSPDG----------CTVASAAADETLRFWNVF 433 (458)
Q Consensus 374 l~~~~g~~d~~i~iwd~---------~-~~~~~~~~~~h~~~V~~l~~spdg----------~~l~s~s~Dg~i~iW~~~ 433 (458)
.++.-...++.+.+++. . ..++++++.||++.|....|-..+ -.|+|=+.|.+|++|-+.
T Consensus 260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 54422222334444433 2 246789999999999877775432 268999999999999986
Q ss_pred C
Q 012679 434 G 434 (458)
Q Consensus 434 ~ 434 (458)
+
T Consensus 340 ~ 340 (1081)
T KOG0309|consen 340 S 340 (1081)
T ss_pred H
Confidence 4
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.9e-11 Score=121.02 Aligned_cols=214 Identities=16% Similarity=0.165 Sum_probs=138.3
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC---CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD---GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~ 280 (458)
.|.++|.. +...+.+.. +...+.+.+| +++.|+..+.+ ..|++||+.++.. ..+....+.+....|+|||+
T Consensus 177 ~L~~~D~d-G~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 177 QLQISDAD-GQNAQSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred EEEEECCC-CCCceEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 57777764 444444444 7778889999 46777776543 3599999987754 23333445567899999999
Q ss_pred EEE-EEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEE--ECCCCCeeEEEe
Q 012679 281 QLA-SGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFW--NTHTGACLNSVD 357 (458)
Q Consensus 281 ~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lw--d~~~~~~~~~~~ 357 (458)
.|+ +.+.+|...||.+...... ...+..+........|+|++..+++++. .++...+| +..++.......
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-----~~~lt~~~~~~~~~~wSpDG~~l~f~s~--~~g~~~Iy~~~~~~g~~~~lt~ 325 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-----LRRLTQSSGIDTEPFFSPDGRSIYFTSD--RGGAPQIYRMPASGGAAQRVTF 325 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-----cEECCCCCCCCcCeEEcCCCCEEEEEec--CCCCcEEEEEECCCCceEEEec
Confidence 887 4567887666655432111 3445555556677899999988887654 34555555 555555433322
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC-c--EEEEec
Q 012679 358 TGSQVCALLWNKNERELLSSHGFT-QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADE-T--LRFWNV 432 (458)
Q Consensus 358 ~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg-~--i~iW~~ 432 (458)
.+.......|+|+|+.++.++... ...|.+||+.+++... +..+ .......|+|||+.|+.++.++ . +.+-++
T Consensus 326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 333345688999999998764321 2369999998876543 3322 2346789999999998877654 3 444445
No 240
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.49 E-value=3.4e-13 Score=116.25 Aligned_cols=157 Identities=22% Similarity=0.383 Sum_probs=119.9
Q ss_pred CCCCEEEEEEcC-CCC--EEEEEecCCeEEEEeCCCceeeEEec---------CCCcccEEEEEeCC--CeEEEEeCCCc
Q 012679 182 ENGPVTSVNWAP-DGR--HIAIGLNNCQVQLWDSTANRQLRTLR---------GGHRSRVGSLAWNN--HILTTGGMDGL 247 (458)
Q Consensus 182 h~~~V~~v~~s~-~g~--~la~g~~dg~v~iwd~~~~~~~~~~~---------~~~~~~v~~l~~~~--~~l~sg~~dg~ 247 (458)
..+.+.|..|.. ++. +|++|..+|.|.+||+.++..+-.+. ..|..+|.++.++. ..=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 356788877654 333 56778899999999999984433332 13899999999963 44567777778
Q ss_pred EEEEEccCCCe--eE-EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEec
Q 012679 248 IINNDVRVRDH--IV-ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324 (458)
Q Consensus 248 i~vwd~~~~~~--~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 324 (458)
+..|.+..... .+ ..+.-..-.|..+.+-||++.+|++|.|+.|+||..++... +..++-|.+.|.+++|+
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p------LAVLkyHsagvn~vAfs 302 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP------LAVLKYHSAGVNAVAFS 302 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc------hhhhhhhhcceeEEEeC
Confidence 88888764421 11 11222234578899999999999999999999999999887 78888999999999999
Q ss_pred CCCCcEEEEeCCCCCCeEEEEEC
Q 012679 325 PFQSNLLATGGGGGDRCIKFWNT 347 (458)
Q Consensus 325 p~~~~ll~s~~g~~d~~i~lwd~ 347 (458)
|+ ..++|+++ .|+.|.+|++
T Consensus 303 pd-~~lmAaas--kD~rISLWkL 322 (323)
T KOG0322|consen 303 PD-CELMAAAS--KDARISLWKL 322 (323)
T ss_pred CC-Cchhhhcc--CCceEEeeec
Confidence 95 67777776 9999999986
No 241
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.8e-11 Score=118.31 Aligned_cols=244 Identities=13% Similarity=0.079 Sum_probs=151.8
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEE---EEecCC--eEEEEeCCCceeeEEecCCCcccEEEEEe-
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA---IGLNNC--QVQLWDSTANRQLRTLRGGHRSRVGSLAW- 234 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la---~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~- 234 (458)
..|++.|.+.+...++. .....+.+-.|+|||+.++ +...+| .|.+.++.+++..+... ..+.....+|
T Consensus 165 ~~l~~~d~dG~~~~~lt---~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~--~~g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQNLRPLT---QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA--LQGNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCCceEcc---cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec--CCCCccceEEC
Confidence 37888998877654333 3345667889999997532 444444 57777888776443322 3333445667
Q ss_pred -CCCeEEEEe-CCC----cEEEEEccCC--CeeEEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEe--CCCCCCCC
Q 012679 235 -NNHILTTGG-MDG----LIINNDVRVR--DHIVETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWD--RSMASSNS 303 (458)
Q Consensus 235 -~~~~l~sg~-~dg----~i~vwd~~~~--~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd--~~~~~~~~ 303 (458)
+|+.|+..+ .+| .+..|++..+ .........+.......+|+|||+.|+..+ .+|...||. +......
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~- 318 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS- 318 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc-
Confidence 576666544 233 3344676542 222223323333456789999999888766 466555554 4321110
Q ss_pred cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEec-CCC
Q 012679 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHG-FTQ 382 (458)
Q Consensus 304 ~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g-~~d 382 (458)
...+..+...+....|+|++..++++........|.+||+.+++..........+....|+|+|+.|+.+.. ...
T Consensus 319 ----~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 319 ----PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred ----eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCC
Confidence 233444455677899999998888776422235799999999887654444456778999999998886532 234
Q ss_pred CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC
Q 012679 383 NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG 415 (458)
Q Consensus 383 ~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg 415 (458)
..|.++++..++..... ...+.+...+|+|-.
T Consensus 395 ~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 395 SELYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred ceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 57888998876654333 344556677888753
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.3e-11 Score=119.65 Aligned_cols=233 Identities=16% Similarity=0.114 Sum_probs=149.9
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-C--eEEEEeCCCceeeEEecCCCcccEEEEEe--CC
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-C--QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NN 236 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-g--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~ 236 (458)
.|+++|....... .+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.... .. ........+| ++
T Consensus 199 ~l~i~d~dG~~~~---~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~-~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNEQ---MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TS-FPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCce---EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cC-CCCCcCCeeECCCC
Confidence 6888887665542 233346678999999999999887543 2 588899988765332 21 2223345677 56
Q ss_pred CeEE-EEeCCCc--EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CC--cEEEEeCCCCCCCCcceeeee
Q 012679 237 HILT-TGGMDGL--IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN--LLHIWDRSMASSNSVTQWLHR 310 (458)
Q Consensus 237 ~~l~-sg~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~ 310 (458)
+.|+ +.+.+|. |+++|+.++. ...+..+........|+|||+.|+..+. ++ .|+++|+.++.. ..
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-------~~ 344 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-------SR 344 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-------EE
Confidence 6555 4566675 7777887654 3444455556678899999998877654 33 466667765543 22
Q ss_pred ecccccceeEEEecCCCCcEEEEeCCCCCC--eEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC--cEE
Q 012679 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDR--CIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN--QLT 386 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~--~i~ 386 (458)
+..........+|+|++..++++.. .++ .|.++|+.+++... +..........|+|+++.++.+.. .++ .+.
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~--~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~-~~g~~~l~ 420 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNR--TNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTT-YQGKQVLA 420 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEe--cCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEe-cCCceEEE
Confidence 2212222345789999988887764 333 56678888876533 222222334579999999887653 333 477
Q ss_pred EEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679 387 LWKYPSMVKMAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 387 iwd~~~~~~~~~~~~h~~~V~~l~~sp 413 (458)
+++. ++.....+..+.+.+...+|+|
T Consensus 421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCCCcCCCccCC
Confidence 7776 4555566666666777888887
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.48 E-value=7.5e-12 Score=109.71 Aligned_cols=269 Identities=21% Similarity=0.243 Sum_probs=186.1
Q ss_pred CCEEEEEECCCCCeeeEEEec-CCCCCEEEEEEcC---CCC-EEEEEecCCeEEEEeCCCceeeEEecCCCc-----ccE
Q 012679 160 GSTVYLWDASDGTTSELVTVD-DENGPVTSVNWAP---DGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHR-----SRV 229 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~-~h~~~V~~v~~s~---~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~-----~~v 229 (458)
-|.+++|++.+-+..++.++. .....+..+.|.. +|. .++.+..+|.|.++..........+.+-.. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 478899998876654433322 1245678888874 555 567778899999998765554444443111 123
Q ss_pred EEEEe--CCCeEEEEeCCCcEEEEEccCCC-eeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679 230 GSLAW--NNHILTTGGMDGLIINNDVRVRD-HIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVT 305 (458)
Q Consensus 230 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~ 305 (458)
.++.| .+..++++..+|.+.+-+..... ..++..+.|.-++..++|+. +.+++.+||.|+.+..||++.+.. .
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---F 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---e
Confidence 45566 36789999999998854443222 22447889999999999986 456889999999999999995432 1
Q ss_pred eeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC-CCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCc
Q 012679 306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH-TGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384 (458)
Q Consensus 306 ~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~ 384 (458)
. -+..+.|...|.+|.-+|..+..+++|+ .|-+|++||.+ -++++..-..++.|..+.++|.....+.+ ...-+-
T Consensus 202 i-~~n~kvH~~GV~SI~ss~~~~~~I~TGs--YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~-~CMh~G 277 (339)
T KOG0280|consen 202 I-WHNSKVHTSGVVSIYSSPPKPTYIATGS--YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA-ACMHNG 277 (339)
T ss_pred e-eecceeeecceEEEecCCCCCceEEEec--cccceeeeehhcccCccccCccccceEEEEecchhhhHHHH-HHHhcC
Confidence 1 2335678999999999998889999987 99999999999 47888888888999999999965522221 113445
Q ss_pred EEEEeCCCc--e---eeEEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEE-EEecCCC
Q 012679 385 LTLWKYPSM--V---KMAELSGHTSRVLFMAQSPDGCTVASAA-ADETLR-FWNVFGA 435 (458)
Q Consensus 385 i~iwd~~~~--~---~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~-iW~~~~~ 435 (458)
.+|-+.... + .....+.|.+-+..-.|......|+|++ .|..++ +|-.-++
T Consensus 278 ~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 278 AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 566665432 2 3344567777777777755556788876 477755 7855433
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.48 E-value=6.9e-10 Score=104.51 Aligned_cols=267 Identities=13% Similarity=0.051 Sum_probs=164.6
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----------CCeEEEEeCCCceeeEEecCCCccc--
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----------NCQVQLWDSTANRQLRTLRGGHRSR-- 228 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----------dg~v~iwd~~~~~~~~~~~~~~~~~-- 228 (458)
+.|++.|..+++. +..+.....+ ..+ ++|||+.|+++.. +..|.+||..+.+.+..+..+...+
T Consensus 27 ~~v~ViD~~~~~v--~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRV--LGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEE--EEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 8999999999887 4444432222 234 9999999888765 6799999999999999888532212
Q ss_pred ------EEEEEeCCCeEEEEe-C-CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679 229 ------VGSLAWNNHILTTGG-M-DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 229 ------v~~l~~~~~~l~sg~-~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
...++-+|++|+... . +..|.+.|+.++.. +..+.- .+...-...+++..+ +-+.||......+....
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKG 178 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-EEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCC
Confidence 455555788888765 3 68999999998764 333322 111111112212111 22334444433332221
Q ss_pred CCCcceeeeeecccccce-eEEEecC-CCCcEEEEeCCCCCCeEEEEECCCC-----CeeEEEeC--------CCCeEEE
Q 012679 301 SNSVTQWLHRLEEHTSAV-KAIAWCP-FQSNLLATGGGGGDRCIKFWNTHTG-----ACLNSVDT--------GSQVCAL 365 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v-~~l~~~p-~~~~ll~s~~g~~d~~i~lwd~~~~-----~~~~~~~~--------~~~v~~~ 365 (458)
... ......+.....++ ..-.+.+ ++..++++ ..|.|.+.|+... +....+.. ...+.-+
T Consensus 179 ~~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs----~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 179 NPK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPT----YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred ceE-EeeeeeecCCccccccCCceEcCCCcEEEEe----cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 100 00011111100000 0003455 66666665 4599999996443 33333221 1223449
Q ss_pred EEcCCCCeEEE-Eec-------CCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCC
Q 012679 366 LWNKNERELLS-SHG-------FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASAA-ADETLRFWNVFGA 435 (458)
Q Consensus 366 ~~s~~~~~l~~-~~g-------~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~i~iW~~~~~ 435 (458)
+++++++.+++ .++ ...+.|.++|..+++.+..+.. ...+..++++|||+ +|++.. .++.|.+.|+.+.
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 99999999998 332 1236899999999999998863 35789999999999 777666 5788999999988
Q ss_pred Cccccc
Q 012679 436 PQVISK 441 (458)
Q Consensus 436 ~~~~~~ 441 (458)
+.+.+.
T Consensus 333 k~i~~i 338 (352)
T TIGR02658 333 KELSSV 338 (352)
T ss_pred eEEeee
Confidence 877664
No 245
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=4.2e-12 Score=113.54 Aligned_cols=270 Identities=19% Similarity=0.335 Sum_probs=179.2
Q ss_pred CCCeEEEEcCCEEEEEEC-CCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC----CceeeEEecCCC
Q 012679 151 SSNVLAIALGSTVYLWDA-SDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST----ANRQLRTLRGGH 225 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~-~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~----~~~~~~~~~~~~ 225 (458)
...+++++.|.+++||-- +.++.-+-... .-..+++++.+.++...|++|-.+|++.-+.+. ....++.... |
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~-h 113 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLA-H 113 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhh-h
Confidence 377999999999999953 34443111111 125679999999999999999999999888653 3344455554 7
Q ss_pred cccEEEEEeC--CCeEEEEeCCCcEEEEEccC----------------------------------------CCeeEEEE
Q 012679 226 RSRVGSLAWN--NHILTTGGMDGLIINNDVRV----------------------------------------RDHIVETY 263 (458)
Q Consensus 226 ~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~----------------------------------------~~~~~~~~ 263 (458)
..+|..+-|+ ...+++.+.|..+.-.-.+. .-.++.++
T Consensus 114 ~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~ 193 (404)
T KOG1409|consen 114 QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTF 193 (404)
T ss_pred hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEE
Confidence 7777777774 45555555554432211110 11235677
Q ss_pred cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEE
Q 012679 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK 343 (458)
Q Consensus 264 ~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~ 343 (458)
.+|.+.+.+++|.+....|.+|..|..+.+||+-..... ...+.+|...|..+...+.-..+++ ++ .||.|.
T Consensus 194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-----~~el~gh~~kV~~l~~~~~t~~l~S-~~--edg~i~ 265 (404)
T KOG1409|consen 194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-----AYELQGHNDKVQALSYAQHTRQLIS-CG--EDGGIV 265 (404)
T ss_pred cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-----eeeeccchhhhhhhhhhhhheeeee-cc--CCCeEE
Confidence 899999999999999999999999999999999776552 5667789999999988775555555 44 899999
Q ss_pred EEECCCCCeeEE----------E-------------------------eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEE
Q 012679 344 FWNTHTGACLNS----------V-------------------------DTGSQVCALLWNKNERELLSSHGFTQNQLTLW 388 (458)
Q Consensus 344 lwd~~~~~~~~~----------~-------------------------~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw 388 (458)
+||++....... . ..+..++..+-+....+... |+ .-.+++-
T Consensus 266 ~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~m--g~-e~~vR~~ 342 (404)
T KOG1409|consen 266 VWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTM--GF-EFSVRVC 342 (404)
T ss_pred EEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccc--cc-eeEEEEe
Confidence 999875432100 0 01222333333333333332 21 2234444
Q ss_pred eC--------CCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 389 KY--------PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 389 d~--------~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
|- +. .+++.+..-...|+.+.+..+-..|+|+|.|..|+|||+..
T Consensus 343 ~~c~~~i~~~~~-t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 343 DSCYPTIKDEER-TPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccchhhhcCCC-CccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 42 21 23444332235688999988888999999999999999864
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=4e-12 Score=120.66 Aligned_cols=199 Identities=20% Similarity=0.348 Sum_probs=154.2
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 231 (458)
..++.++.+..||-+|++.|.. +..+....+.+++|..++...+|++|+.+|.|..||......+..+.... .|.+
T Consensus 146 cDly~~gsg~evYRlNLEqGrf--L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~--~v~s 221 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQGRF--LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS--SVNS 221 (703)
T ss_pred ccEEEeecCcceEEEEcccccc--ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc--ccCC
Confidence 4688899999999999999998 66666667889999999999999999999999999988777666655300 0100
Q ss_pred EEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee
Q 012679 232 LAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311 (458)
Q Consensus 232 l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 311 (458)
.........|+++.|+.+|-.+++|+.+|.|.|||++...+. +..-
T Consensus 222 -----------------------------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-----~~kd 267 (703)
T KOG2321|consen 222 -----------------------------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-----LVKD 267 (703)
T ss_pred -----------------------------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-----eecc
Confidence 001112345999999999999999999999999999998762 2222
Q ss_pred cccccceeEEEecCC-CCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679 312 EEHTSAVKAIAWCPF-QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 312 ~~h~~~v~~l~~~p~-~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~ 390 (458)
....-+|..+.|.+. +...+++. ....++|||-.+|+....+.....+..+|+-|++..++++ ..+..+..|=+
T Consensus 268 h~~e~pi~~l~~~~~~~q~~v~S~---Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A--ne~~~m~~yyi 342 (703)
T KOG2321|consen 268 HGYELPIKKLDWQDTDQQNKVVSM---DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA--NESSKMHTYYI 342 (703)
T ss_pred cCCccceeeecccccCCCceEEec---chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe--cCCCcceeEEc
Confidence 233457889999764 34455554 5678999999999999999998899999999999999984 46666766666
Q ss_pred CCc
Q 012679 391 PSM 393 (458)
Q Consensus 391 ~~~ 393 (458)
+..
T Consensus 343 P~L 345 (703)
T KOG2321|consen 343 PSL 345 (703)
T ss_pred ccc
Confidence 554
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=1.2e-10 Score=115.37 Aligned_cols=215 Identities=16% Similarity=0.156 Sum_probs=143.3
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC---CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD---GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~ 280 (458)
.|.++|..... .+.+.. +...+...+| +++.|+.+..+ ..|++||+.++.. ..+..+...+.++.|+|||+
T Consensus 171 ~l~~~d~~g~~-~~~l~~-~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 171 ELQVADYDGAN-PQTITR-SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred eEEEEcCCCCC-CEEeec-CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 68888875443 344444 6667888888 57778776643 4799999987653 23334556677799999999
Q ss_pred EEEEE-ECCC--cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679 281 QLASG-GNDN--LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357 (458)
Q Consensus 281 ~l~sg-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~ 357 (458)
.|+.. +.++ .|++||+.++.. ..+..+........|+|++..++++........|.++|+.+++......
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~-------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~ 319 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQL-------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF 319 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCE-------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 87644 4444 588889876542 3344454555678999998888776541223468889988877554444
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC---cEEEEecC
Q 012679 358 TGSQVCALLWNKNERELLSSHGFT-QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADE---TLRFWNVF 433 (458)
Q Consensus 358 ~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg---~i~iW~~~ 433 (458)
....+....|+|+++.++.+.... ...|.+||+.++... .+... .......|+|||+.|+.++.++ .+.+.+..
T Consensus 320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 455677889999999998865321 127888998875432 23222 2345568999999998887764 34555543
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3e-10 Score=112.97 Aligned_cols=218 Identities=17% Similarity=0.150 Sum_probs=143.3
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC---CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD---GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~ 280 (458)
.|.++|...+.. +.+.. +...+....| +++.|+..+.+ ..|.+||+.++.. ..+....+.+....|+|||+
T Consensus 180 ~l~~~d~~g~~~-~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCCc-eEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCC
Confidence 477888775543 44443 6678888899 46777665533 3689999987653 23333344556789999999
Q ss_pred EEEE-EECCC--cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679 281 QLAS-GGNDN--LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357 (458)
Q Consensus 281 ~l~s-g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~ 357 (458)
.|+. ...+| .|++||+.++.. ..+..+........|+|++..++++........|+++|+.+++......
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~-------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~ 328 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQL-------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF 328 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCe-------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 8874 44444 588889887643 3444555566778999999888877642223468888988887544332
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC---CcEEEEecC
Q 012679 358 TGSQVCALLWNKNERELLSSHGFT-QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD---ETLRFWNVF 433 (458)
Q Consensus 358 ~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---g~i~iW~~~ 433 (458)
.........|+|+++.++.+.... ...|.++|+.+++.. .+. +........|+|||+.|+..+.+ ..|.++++.
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 333445678999999998865321 225888998877543 232 22222356899999999877654 346677775
Q ss_pred CCC
Q 012679 434 GAP 436 (458)
Q Consensus 434 ~~~ 436 (458)
+..
T Consensus 407 g~~ 409 (430)
T PRK00178 407 GRV 409 (430)
T ss_pred CCc
Confidence 443
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.5e-10 Score=112.57 Aligned_cols=215 Identities=11% Similarity=0.137 Sum_probs=138.1
Q ss_pred eeccCC--C--eEEEEcC---CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec-CC----eEEEEeCCC
Q 012679 147 LDWGSS--N--VLAIALG---STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN-NC----QVQLWDSTA 214 (458)
Q Consensus 147 ~~~~~~--~--~la~~~d---~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~-dg----~v~iwd~~~ 214 (458)
-.|+++ . ++.++.. ..|++.++.+++...+..+.+ .....+|+|||+.||..+. +| .+.+|++..
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 467774 3 3334432 479999999998766665544 3456899999999887653 23 344577765
Q ss_pred c--eeeEEecCCCcccEEEEEe--CCCeEEEEe-CCCcEEEE--EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC
Q 012679 215 N--RQLRTLRGGHRSRVGSLAW--NNHILTTGG-MDGLIINN--DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN 287 (458)
Q Consensus 215 ~--~~~~~~~~~~~~~v~~l~~--~~~~l~sg~-~dg~i~vw--d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~ 287 (458)
+ .....+...+.......+| +|..|+..+ .+|...+| ++.........+..+...+....|+|||+.|+..+.
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence 3 2223333212233455677 567666554 56755555 443222223444445566778999999999987765
Q ss_pred C---CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEE
Q 012679 288 D---NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCA 364 (458)
Q Consensus 288 d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~ 364 (458)
+ ..|.+||+.++.. ..+......+....|+|++..++++........|.++|+.+++........+.+..
T Consensus 347 ~~g~~~I~v~dl~~g~~-------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~ 419 (428)
T PRK01029 347 IKGVRQICVYDLATGRD-------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRF 419 (428)
T ss_pred CCCCcEEEEEECCCCCe-------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccC
Confidence 3 4699999987754 23333334567899999998888776533456799999998877665555566777
Q ss_pred EEEcCCC
Q 012679 365 LLWNKNE 371 (458)
Q Consensus 365 ~~~s~~~ 371 (458)
.+|+|-.
T Consensus 420 p~Ws~~~ 426 (428)
T PRK01029 420 PSWGAFP 426 (428)
T ss_pred ceecCCC
Confidence 7887753
No 250
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=6.4e-11 Score=115.22 Aligned_cols=288 Identities=17% Similarity=0.235 Sum_probs=198.3
Q ss_pred CCCccccceeeccC--CCeEEEEcCCEEEEEECCCCCe-------------eeEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 012679 138 LVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTT-------------SELVTVDDENGPVTSVNWAPDGRHIAIGL 202 (458)
Q Consensus 138 ~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~-------------~~~~~~~~h~~~V~~v~~s~~g~~la~g~ 202 (458)
+.+...++++.|+. +.++++|.||.+++..+.+... ..-.++++|.+.|.-+.|+.+.+.|-+..
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 45667899999987 5688888899999998765321 11245789999999999999999999999
Q ss_pred cCCeEEEEeCCCceeeEEecC-CCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC
Q 012679 203 NNCQVQLWDSTANRQLRTLRG-GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279 (458)
Q Consensus 203 ~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~ 279 (458)
.+|.|.||-+-.+.-...+.. ...+.|.+++| +|..++....||.|.+=.+....---+.+++ .....+.|++|.
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDL 168 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccH
Confidence 999999999888775554432 25677899999 4899999999999988777644321222322 234578899999
Q ss_pred CEEEEEECCCcEEEEeCCCCCCCCc-ceeee----eecccccceeEEEec--------CCCCcEEEEeCCCCCCeEEEEE
Q 012679 280 QQLASGGNDNLLHIWDRSMASSNSV-TQWLH----RLEEHTSAVKAIAWC--------PFQSNLLATGGGGGDRCIKFWN 346 (458)
Q Consensus 280 ~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~----~~~~h~~~v~~l~~~--------p~~~~ll~s~~g~~d~~i~lwd 346 (458)
+.++.+-..|.+.+||....-.... ..+.. .+......|..+.|. |+.+ .++.+- ..|.+.+-.
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy--~nGr~QiMR 245 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCY--ANGRMQIMR 245 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEE--cCceehhhh
Confidence 9999888999999999654321100 00101 111122235566664 3434 444443 678887776
Q ss_pred CCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC-------CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEE
Q 012679 347 THTGACLNSVDTGSQVCALLWNKNERELLSSHGFT-------QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVA 419 (458)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~-------d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 419 (458)
-.+...-..++++-.+....|+++|..|++++... .+.|.+|. +-|+.+.+++.....|++++|-..|-.++
T Consensus 246 ~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 246 SENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred hcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEE
Confidence 66555555667778899999999999999873221 13455554 56777888887788899999876665554
Q ss_pred EEeCCCcEEEEec
Q 012679 420 SAAADETLRFWNV 432 (458)
Q Consensus 420 s~s~Dg~i~iW~~ 432 (458)
.+ .|+.|.+=++
T Consensus 325 ~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 325 IA-VDSFIYFANI 336 (1189)
T ss_pred EE-ecceEEEEee
Confidence 33 4455444333
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=9.1e-11 Score=112.25 Aligned_cols=187 Identities=15% Similarity=0.263 Sum_probs=150.1
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCC-CCCEEEEEEc------C--------------CCCEEEEEecCCeEEEE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDE-NGPVTSVNWA------P--------------DGRHIAIGLNNCQVQLW 210 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h-~~~V~~v~~s------~--------------~g~~la~g~~dg~v~iw 210 (458)
..++....||.+++|+...++..+-+.-..| .+..++..|. | |...++-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 3466677899999999998876433321111 2344455552 2 33468889999999999
Q ss_pred eCCCceeeEEec-CCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC
Q 012679 211 DSTANRQLRTLR-GGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN 287 (458)
Q Consensus 211 d~~~~~~~~~~~-~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~ 287 (458)
++..++....+. +.|.+.|.++.|+. ..|.+++.|+.+..|+...... +.........+.+++.+||++.|++|+
T Consensus 86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eeeeccCCCccceEEEcCCCCEEEecc-
Confidence 999999988887 67999999999953 7899999999999999987654 677888888899999999999999987
Q ss_pred CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC-----CCcEEEEeCCCCCCeEEEEECCC
Q 012679 288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF-----QSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 288 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-----~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
+.|++||+++.+. +..|.+|.++|.+++|--. |.++|.+.. .+..|.+|-+..
T Consensus 164 -~~ik~~~~~~kev------v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 -RQIKVLDIETKEV------VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWVVEK 221 (541)
T ss_pred -ceEEEEEccCceE------EEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEEEEc
Confidence 5899999999887 8999999999999999876 677887766 666777886654
No 252
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.39 E-value=3.4e-10 Score=106.47 Aligned_cols=284 Identities=12% Similarity=0.155 Sum_probs=193.2
Q ss_pred CccccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC-------------
Q 012679 140 DDYYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC------------- 205 (458)
Q Consensus 140 ~d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg------------- 205 (458)
.++.++...|++ +..++...-..|.+|....... +..+. | ..|..+.|+|.++||.+-...+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~--l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAK--LVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhh--eeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 355677788988 5677777778899999877663 55554 2 4599999999999999865433
Q ss_pred --eEEEEeCCCceeeEEecCCCccc--EE-EEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcc-cccceEeEEEcC
Q 012679 206 --QVQLWDSTANRQLRTLRGGHRSR--VG-SLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRG-HNQEVCGLKWSA 277 (458)
Q Consensus 206 --~v~iwd~~~~~~~~~~~~~~~~~--v~-~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~sp 277 (458)
.+.+||+.++..+..+.. ...+ .. -+.| +..+++-. ....++|+++ +.......+.. ....|....|+|
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~-~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNG-ISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred cCceeEEeccCceeEeeccc-cCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 499999999999998886 4433 22 3444 45554433 3456889997 33311111111 135688888999
Q ss_pred CC--CEEEE-----EECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC--------CCCCeE
Q 012679 278 SG--QQLAS-----GGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG--------GGDRCI 342 (458)
Q Consensus 278 d~--~~l~s-----g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g--------~~d~~i 342 (458)
.+ ..||. .+.++.++||.+..... +.+..-....=..+.|.+.+..+++-.-. -....+
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~------l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL 257 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSV------LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL 257 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCe------eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence 53 34443 45678899999875443 22211122233468899888877654310 023568
Q ss_pred EEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679 343 KFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 343 ~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 422 (458)
+++++....+-......++|..++|.|.++.+++++|+.+-.+.++|++.. .. +......=..+.|+|.+++++.++
T Consensus 258 yl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 258 YLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred EEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccCcccEEEEec
Confidence 888888555544446688999999999999999999999999999999876 22 223344445678999999999888
Q ss_pred CC---CcEEEEecCCCCccc
Q 012679 423 AD---ETLRFWNVFGAPQVI 439 (458)
Q Consensus 423 ~D---g~i~iW~~~~~~~~~ 439 (458)
-| |.+-+|+..+.-...
T Consensus 335 F~nl~gni~i~~~~~rf~~~ 354 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVA 354 (561)
T ss_pred CCccccceEEeccCCceEEE
Confidence 76 678888876654443
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=2.4e-09 Score=100.86 Aligned_cols=237 Identities=10% Similarity=0.094 Sum_probs=154.7
Q ss_pred cCCEEEEEECCCCCeeeEEEecCC-----CCCEEEEEEcCCCCEEEEEe-c-CCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679 159 LGSTVYLWDASDGTTSELVTVDDE-----NGPVTSVNWAPDGRHIAIGL-N-NCQVQLWDSTANRQLRTLRGGHRSRVGS 231 (458)
Q Consensus 159 ~d~~v~iwd~~~~~~~~~~~~~~h-----~~~V~~v~~s~~g~~la~g~-~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 231 (458)
.+..|.+||..+.+...-..+... ......++++|||++|++.. . +..|.+.|+.+++.+.++.. .....-
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~v 152 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHI 152 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEE
Confidence 368999999999987433333211 22344789999999999876 3 68999999999999998885 222222
Q ss_pred EEeCCCeEEEEeCCCcEEEEEccCCCeeE-EE---Ecccccce-EeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679 232 LAWNNHILTTGGMDGLIINNDVRVRDHIV-ET---YRGHNQEV-CGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVT 305 (458)
Q Consensus 232 l~~~~~~l~sg~~dg~i~vwd~~~~~~~~-~~---~~~h~~~v-~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~ 305 (458)
+........+-+.||......+....... .. +......+ ..-.|.+ +|+++..... |.|.+.|+........
T Consensus 153 y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~- 230 (352)
T TIGR02658 153 FPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL- 230 (352)
T ss_pred EEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec-
Confidence 33333333344455555554443332211 11 11100000 0003455 8887777666 9999999765443211
Q ss_pred eeeeeec-------ccccceeEEEecCCCCcEEEEeCCC-------CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCC
Q 012679 306 QWLHRLE-------EHTSAVKAIAWCPFQSNLLATGGGG-------GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE 371 (458)
Q Consensus 306 ~~~~~~~-------~h~~~v~~l~~~p~~~~ll~s~~g~-------~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~ 371 (458)
.....+. -..+.+.-++++|+++.+++...+. ..+.|.++|..+++.+..+..+..+..++++|++
T Consensus 231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dg 310 (352)
T TIGR02658 231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDA 310 (352)
T ss_pred ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCC
Confidence 1111111 1233444599999999888853211 2258999999999999999999999999999999
Q ss_pred C-eEEEEecCCCCcEEEEeCCCceeeEEEe
Q 012679 372 R-ELLSSHGFTQNQLTLWKYPSMVKMAELS 400 (458)
Q Consensus 372 ~-~l~~~~g~~d~~i~iwd~~~~~~~~~~~ 400 (458)
+ .++++.+ .++.|.++|..+++.+.++.
T Consensus 311 kp~lyvtn~-~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 311 KPLLYALST-GDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CeEEEEeCC-CCCcEEEEECcCCeEEeeec
Confidence 9 7776644 57889999999999998873
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=3.5e-11 Score=115.06 Aligned_cols=216 Identities=15% Similarity=0.153 Sum_probs=157.2
Q ss_pred CCCCEEEEEecCCeEEEEeCCCceeeEEecCC--CcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccce
Q 012679 193 PDGRHIAIGLNNCQVQLWDSTANRQLRTLRGG--HRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV 270 (458)
Q Consensus 193 ~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v 270 (458)
|.+.|+|....||.+++||...++....+... -.+...+..| .+.....+.+.... ..+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w-----------------~L~~~~s~~k~~~~--~~~ 63 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKW-----------------GLSADYSPMKWLSL--EKA 63 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEE-----------------EEEeccchHHHHhH--HHH
Confidence 45679999999999999999999887777631 1223333333 32222211111100 001
Q ss_pred EeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350 (458)
Q Consensus 271 ~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~ 350 (458)
. .-+-|...++-|...|.|.+|+...++. .....-..|.+.|.++.|+.+ -..+.+++ .|..+..|+...+
T Consensus 64 ~--~~s~~t~~lvlgt~~g~v~~ys~~~g~i----t~~~st~~h~~~v~~~~~~~~-~~ciyS~~--ad~~v~~~~~~~~ 134 (541)
T KOG4547|consen 64 K--KASLDTSMLVLGTPQGSVLLYSVAGGEI----TAKLSTDKHYGNVNEILDAQR-LGCIYSVG--ADLKVVYILEKEK 134 (541)
T ss_pred h--hccCCceEEEeecCCccEEEEEecCCeE----EEEEecCCCCCcceeeecccc-cCceEecC--CceeEEEEecccc
Confidence 1 1123556788899999999999988775 112333579999999999874 56666666 8999999999999
Q ss_pred CeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCC-----CCEEEEE-eC
Q 012679 351 ACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD-----GCTVASA-AA 423 (458)
Q Consensus 351 ~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd-----g~~l~s~-s~ 423 (458)
..+...... ..+.+++.+||++.++++ .++|.+||+.+.+.+..|.||.++|.+++|..+ |.+++++ ..
T Consensus 135 ~~~~~~~~~~~~~~sl~is~D~~~l~~a----s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISPDGKILLTA----SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred eeeeeeccCCCccceEEEcCCCCEEEec----cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence 988888764 558899999999999984 478999999999999999999999999999876 6666554 45
Q ss_pred CCcEEEEecCCCCcccc
Q 012679 424 DETLRFWNVFGAPQVIS 440 (458)
Q Consensus 424 Dg~i~iW~~~~~~~~~~ 440 (458)
+.-+.+|-+........
T Consensus 211 ~r~i~~w~v~~~~kkks 227 (541)
T KOG4547|consen 211 ERGITVWVVEKEDKKKS 227 (541)
T ss_pred ccceeEEEEEcccccch
Confidence 67789998876544433
No 255
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.2e-10 Score=114.38 Aligned_cols=285 Identities=16% Similarity=0.178 Sum_probs=197.4
Q ss_pred ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC------------CCEEEEEecCCeEEEE
Q 012679 143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD------------GRHIAIGLNNCQVQLW 210 (458)
Q Consensus 143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~------------g~~la~g~~dg~v~iw 210 (458)
..+.+||++..++|.|..+.|.+-|..+-+. +..++.|...|+.|.|.|. .-.||++...|.|.+|
T Consensus 17 N~~A~Dw~~~GLiAygshslV~VVDs~s~q~--iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSGLIAYGSHSLVSVVDSRSLQL--IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccceEEEecCceEEEEehhhhhh--hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 3778999999999999999999999887776 7778889999999999873 1267888889999999
Q ss_pred eCCCceeeEEecCCCcccEEEEEe-----C-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEE
Q 012679 211 DSTANRQLRTLRGGHRSRVGSLAW-----N-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLA 283 (458)
Q Consensus 211 d~~~~~~~~~~~~~~~~~v~~l~~-----~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~ 283 (458)
|...+..+..+.. |..++..++| + .+.|++-.....|.+|+..+++...+.-.+ .....|+.+.| |.+.+.
T Consensus 95 d~~~~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 95 DFVLASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EehhhhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-CcceeeeeeCCCCcceEE
Confidence 9999988888886 8899999999 2 367888888899999999988864433323 34566788888 677777
Q ss_pred EEECCCcEEEEeCCCCCCCCc-ceeeeeeccccc-------------------------ceeEEEecCCCCcEEEEeCCC
Q 012679 284 SGGNDNLLHIWDRSMASSNSV-TQWLHRLEEHTS-------------------------AVKAIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 284 sg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~h~~-------------------------~v~~l~~~p~~~~ll~s~~g~ 337 (458)
.-+..|.+.+-+.-....+.. .+..+.-..|.. ....++|+|.-.+++...
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~--- 249 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT--- 249 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE---
Confidence 777778887776544333211 111111112221 012467788666665554
Q ss_pred CCCeEEEEECCCCCeeEEEeCCC-CeEEEEEcCCC--CeEEEEecCCCCcEEEEeCCC----------------ceeeEE
Q 012679 338 GDRCIKFWNTHTGACLNSVDTGS-QVCALLWNKNE--RELLSSHGFTQNQLTLWKYPS----------------MVKMAE 398 (458)
Q Consensus 338 ~d~~i~lwd~~~~~~~~~~~~~~-~v~~~~~s~~~--~~l~~~~g~~d~~i~iwd~~~----------------~~~~~~ 398 (458)
..+.+.++|++-..++..+.... .+.-+.|-|+. ..|++. ..+|.+.||--+. ++++..
T Consensus 250 ~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfcl--H~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~ 327 (1062)
T KOG1912|consen 250 FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCL--HSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHV 327 (1062)
T ss_pred eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEE--ecCCeEEEEEeeccCccccccchhhccccccceEE
Confidence 68899999999998888876543 34455565554 556664 4899999997544 222222
Q ss_pred EeCC-CCcEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCC
Q 012679 399 LSGH-TSRVLFMAQSPD-GCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 399 ~~~h-~~~V~~l~~spd-g~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
+..- +-++...+..|. ...++.--.+|.+.+|.+.++.
T Consensus 328 vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 328 VRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred EeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 2111 122333344453 4445555568889999998654
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1e-08 Score=93.29 Aligned_cols=272 Identities=12% Similarity=0.131 Sum_probs=182.3
Q ss_pred CCEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEeCCC--ceee--EEecCCCcccEE
Q 012679 160 GSTVYLWDASD--GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---CQVQLWDSTA--NRQL--RTLRGGHRSRVG 230 (458)
Q Consensus 160 d~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g~v~iwd~~~--~~~~--~~~~~~~~~~v~ 230 (458)
+.-|++|++.+ |++..+.. -.+.+.++-++|+|++++|.++-.+ |.|..|.+.. |+.. ..... ...+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-PGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-CCCCCe
Confidence 56899999873 44333332 3456778999999999999888654 6777777664 4432 22221 222225
Q ss_pred EEEe--CCCeEEEEeC-CCcEEEEEccCCCeeEE--EEcccccc----------eEeEEEcCCCCEEEEEEC-CCcEEEE
Q 012679 231 SLAW--NNHILTTGGM-DGLIINNDVRVRDHIVE--TYRGHNQE----------VCGLKWSASGQQLASGGN-DNLLHIW 294 (458)
Q Consensus 231 ~l~~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~--~~~~h~~~----------v~~l~~spd~~~l~sg~~-dg~i~iw 294 (458)
.++. ++.+++++.. .|.|.++-++....+.. ....|.+. +....+.|++++|++..- --.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 5666 5777777754 58899999876543221 22234444 788899999999988763 3479999
Q ss_pred eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-C---eeEEEe-------CCCCeE
Q 012679 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-A---CLNSVD-------TGSQVC 363 (458)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~---~~~~~~-------~~~~v~ 363 (458)
++..+...... ...+ ...+.-+.|+|+|+++...+.+- -+++|-+|..... . .++.+. ......
T Consensus 173 ~~~dg~L~~~~--~~~v-~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 173 DLDDGKLTPAD--PAEV-KPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred EcccCcccccc--cccc-CCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence 99866553222 1122 34556789999999888877776 8999999998873 2 233322 234577
Q ss_pred EEEEcCCCCeEEEEecCCCCcEEEEeCCCc-eeeE---EEeCCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEecCCCCcc
Q 012679 364 ALLWNKNERELLSSHGFTQNQLTLWKYPSM-VKMA---ELSGHTSRVLFMAQSPDGCTVASAAAD-ETLRFWNVFGAPQV 438 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~D-g~i~iW~~~~~~~~ 438 (458)
.+..+++|++|.++.- ..+.|.+|.+... ..+. ....+........|+|.|++|+.+..| .+|.+|.+....-.
T Consensus 248 aIhis~dGrFLYasNR-g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 248 AIHISPDGRFLYASNR-GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred EEEECCCCCEEEEecC-CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence 8999999999999743 4558888887543 2222 222233346889999999999988865 57999998765443
Q ss_pred c
Q 012679 439 I 439 (458)
Q Consensus 439 ~ 439 (458)
.
T Consensus 327 L 327 (346)
T COG2706 327 L 327 (346)
T ss_pred E
Confidence 3
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.2e-09 Score=108.61 Aligned_cols=216 Identities=18% Similarity=0.171 Sum_probs=137.3
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeC-CC--cEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGM-DG--LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~ 280 (458)
.|.++|...... +.+.. +...+.+..| +++.|+..+. ++ .|++||+.++.. ..+....+......|+|||+
T Consensus 199 ~l~i~d~dG~~~-~~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCc-eEeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCC
Confidence 577778655443 34443 6677888888 4677766543 33 588999887653 22222233345789999999
Q ss_pred EEEE-EECCCc--EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679 281 QLAS-GGNDNL--LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357 (458)
Q Consensus 281 ~l~s-g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~ 357 (458)
.|+. .+.+|. |+++|+.++. ...+..+.......+|+|++..++++........|.++|+.+++......
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~-------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKA-------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec
Confidence 8875 455664 7777877654 33444555566788999999988887642233467788888887544322
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCCCC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-Cc--EEEEec
Q 012679 358 TGSQVCALLWNKNERELLSSHGFTQN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD-ET--LRFWNV 432 (458)
Q Consensus 358 ~~~~v~~~~~s~~~~~l~~~~g~~d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-g~--i~iW~~ 432 (458)
.........|+|+|+.++.+.. .++ .|.++|+.+++.. .+... .......|+|||+.|+..+.+ |. |.+++.
T Consensus 348 ~g~~~~~~~~SpDG~~l~~~~~-~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 348 EGEQNLGGSITPDGRSMIMVNR-TNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CCCCCcCeeECCCCCEEEEEEe-cCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 3333456789999999988643 344 4566787776543 23222 122245899999988776653 33 667776
Q ss_pred CCC
Q 012679 433 FGA 435 (458)
Q Consensus 433 ~~~ 435 (458)
.+.
T Consensus 425 ~G~ 427 (448)
T PRK04792 425 DGR 427 (448)
T ss_pred CCC
Confidence 433
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=6.3e-11 Score=120.02 Aligned_cols=260 Identities=15% Similarity=0.196 Sum_probs=177.4
Q ss_pred CeEEEEcCCEEEEEECCCCCeee----EEEecCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCc
Q 012679 153 NVLAIALGSTVYLWDASDGTTSE----LVTVDDEN--GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR 226 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~~~----~~~~~~h~--~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~ 226 (458)
..+.++.+-.|.+||+..+.... ..-+..|. +.+. -.+.+++.+..-+.+..-+.... ....+.. +.
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~~~~-~~~~~s~-wi 90 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKEASNQ-IIERFSD-WI 90 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecchhhh-hhhhccc-cc
Confidence 44666778899999999876521 11122330 0010 12335555555444444332221 1112221 21
Q ss_pred ccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc----cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCC
Q 012679 227 SRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN----QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN 302 (458)
Q Consensus 227 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~----~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~ 302 (458)
.. ..+.|....++.++.+..+.+||...... ........ ....-+-++++.-++++|+.-+.|.+|+......
T Consensus 91 ~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~-~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~- 167 (967)
T KOG0974|consen 91 FG-AKLFEENKKIALVTSRNSLLIRDSKNSSV-LSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK- 167 (967)
T ss_pred cc-cchhhhcceEEEEEcCceEEEEecccCce-ehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-
Confidence 11 45556788899999999999999876543 22222111 1223344567788999999999999999883333
Q ss_pred CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE--EEeCCCCeEEEEEcCCCCeEEEEecC
Q 012679 303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN--SVDTGSQVCALLWNKNERELLSSHGF 380 (458)
Q Consensus 303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~g~ 380 (458)
-..+.+|.+.|.++.|+-++.++ ++.+ .|+++++|++.+.+... .+.+...+..+++.|+ ++++ +.
T Consensus 168 -----p~~l~GHeG~iF~i~~s~dg~~i-~s~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t--~g 235 (967)
T KOG0974|consen 168 -----PIRLKGHEGSIFSIVTSLDGRYI-ASVS--DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIIT--VG 235 (967)
T ss_pred -----cceecccCCceEEEEEccCCcEE-EEEe--cCcceeeeecccccccCcccccccceeEEEEeccc--eeEE--ec
Confidence 22678999999999999976554 5555 99999999999988665 4567788999999999 6666 44
Q ss_pred CCCcEEEEeCCCceeeEEEeCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 381 TQNQLTLWKYPSMVKMAELSGHTS-RVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 381 ~d~~i~iwd~~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
.|-+.++|+... +.+..+.+|.. .|..++..++...++|++.|+.+++|++...
T Consensus 236 edctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 236 EDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 899999996644 44447888874 5999999999999999999999999998654
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=1.4e-08 Score=97.64 Aligned_cols=255 Identities=13% Similarity=0.146 Sum_probs=164.4
Q ss_pred CCeEEEEc----CCEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCC-ceeeEE---
Q 012679 152 SNVLAIAL----GSTVYLWDASD--GTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTA-NRQLRT--- 220 (458)
Q Consensus 152 ~~~la~~~----d~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~-~~~~~~--- 220 (458)
+.++++.. ++.|..|.+.. +++..+.+..........++++|++++|+++. .+|.|.++++.. +.....
T Consensus 49 ~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~ 128 (345)
T PF10282_consen 49 RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQT 128 (345)
T ss_dssp SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEE
T ss_pred CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeee
Confidence 45666655 46888888765 66666666654456778999999999999987 488999999977 333222
Q ss_pred ec---------CCCcccEEEEEeC--CCeEEEEe-CCCcEEEEEccCCCe-eE--EEE-cccccceEeEEEcCCCCEEEE
Q 012679 221 LR---------GGHRSRVGSLAWN--NHILTTGG-MDGLIINNDVRVRDH-IV--ETY-RGHNQEVCGLKWSASGQQLAS 284 (458)
Q Consensus 221 ~~---------~~~~~~v~~l~~~--~~~l~sg~-~dg~i~vwd~~~~~~-~~--~~~-~~h~~~v~~l~~spd~~~l~s 284 (458)
+. ........++.++ ++++++.. ....|.+|++..... +. ..+ ......-..+.|+|+++++.+
T Consensus 129 ~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv 208 (345)
T PF10282_consen 129 VRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYV 208 (345)
T ss_dssp EESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEE
T ss_pred cccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEE
Confidence 21 0123456778884 56666654 345799999976552 21 112 233455788999999998866
Q ss_pred EE-CCCcEEEEeCCCCCCCCcceeeeeecc------cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC--CCC--ee
Q 012679 285 GG-NDNLLHIWDRSMASSNSVTQWLHRLEE------HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH--TGA--CL 353 (458)
Q Consensus 285 g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~--~~~--~~ 353 (458)
.. .++.|.++++...... ...+..+.. .......|+++|+++.++++.. ....|.+|++. ++. .+
T Consensus 209 ~~e~s~~v~v~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 209 VNELSNTVSVFDYDPSDGS--LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp EETTTTEEEEEEEETTTTE--EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTTTTTEEEE
T ss_pred ecCCCCcEEEEeecccCCc--eeEEEEeeeccccccccCCceeEEEecCCCEEEEEec--cCCEEEEEEEecCCCceEEE
Confidence 65 4788999998832221 111222211 1125678999999999999876 67899999983 343 33
Q ss_pred EEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC--CCceeeEEEe-CCCCcEEEEEE
Q 012679 354 NSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKY--PSMVKMAELS-GHTSRVLFMAQ 411 (458)
Q Consensus 354 ~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~--~~~~~~~~~~-~h~~~V~~l~~ 411 (458)
..+.. +.....+.++|++++|+++. ..++.|.+|++ .++.....-. ..-....||.|
T Consensus 285 ~~~~~~G~~Pr~~~~s~~g~~l~Va~-~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 285 QTVPTGGKFPRHFAFSPDGRYLYVAN-QDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEESSSSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEe-cCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 44454 45589999999999999974 46778999876 4555443322 12344556665
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.3e-09 Score=103.50 Aligned_cols=281 Identities=16% Similarity=0.272 Sum_probs=181.1
Q ss_pred ccceeeccCC--CeEEEEc-----------CCEEEEEECCCCCeeeEEEecCCCCCE-EEEEEcCCCCEEEEEecCCeEE
Q 012679 143 YLNLLDWGSS--NVLAIAL-----------GSTVYLWDASDGTTSELVTVDDENGPV-TSVNWAPDGRHIAIGLNNCQVQ 208 (458)
Q Consensus 143 ~~~~~~~~~~--~~la~~~-----------d~~v~iwd~~~~~~~~~~~~~~h~~~V-~~v~~s~~g~~la~g~~dg~v~ 208 (458)
++..++++|+ .|++-+. +..+.|||+.+|.....+........+ .-..||.|++|+|.-..+ .|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEE
Confidence 3556777773 4555442 268999999999875444432122222 346899999999988776 799
Q ss_pred EEeCCCceeeEEecCCCcccEEEEEeCC--CeEEEEeC-----CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCE
Q 012679 209 LWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGM-----DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ 281 (458)
Q Consensus 209 iwd~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~ 281 (458)
||+..+..++..-.. ....|..++|.+ ++||--.. -..+.+-.+.+++. +++..-|.-.=+.+.|-.+|.+
T Consensus 330 IyEtpsf~lld~Ksl-ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSL-KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEecCceeeeccccc-CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcE
Confidence 999877554433222 456788888865 34443221 12344445544443 3333444445567888889999
Q ss_pred EEEEE----------CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-C
Q 012679 282 LASGG----------NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-G 350 (458)
Q Consensus 282 l~sg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~ 350 (458)
|+.-- .=-.+.|+.++....+ +..+ .-...|...+|-|.|..+.+..+.+...++.+|.+.+ .
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIp-----ve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~ 481 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIP-----VEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI 481 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCC-----ceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence 87532 1123556666655442 2222 3456789999999988877766655667899998873 2
Q ss_pred ---CeeEEEeCCCCeEEEEEcCCCCeEEEEe-cCCCCcEEEEeCCC--ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC-
Q 012679 351 ---ACLNSVDTGSQVCALLWNKNERELLSSH-GFTQNQLTLWKYPS--MVKMAELSGHTSRVLFMAQSPDGCTVASAAA- 423 (458)
Q Consensus 351 ---~~~~~~~~~~~v~~~~~s~~~~~l~~~~-g~~d~~i~iwd~~~--~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~- 423 (458)
+.+..++. ...+.+.|+|.|++++++. ++..|.+.++|... .+.+... .| ...+.+.|.|.|+|++|++.
T Consensus 482 ~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-eh-~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 482 KKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-EH-FAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred Cchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-cc-cccccceECCCCCEEEEeeeh
Confidence 23334433 5578899999999998754 33578999999874 3332222 23 34578899999999999975
Q ss_pred -----CCcEEEEecCCC
Q 012679 424 -----DETLRFWNVFGA 435 (458)
Q Consensus 424 -----Dg~i~iW~~~~~ 435 (458)
|.--+||++.+.
T Consensus 559 wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 559 WRHKVDNGYRIFTFQGR 575 (698)
T ss_pred hhhccccceEEEEeecH
Confidence 556788888653
No 261
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=6.4e-11 Score=120.00 Aligned_cols=188 Identities=17% Similarity=0.259 Sum_probs=147.4
Q ss_pred eeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC----CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679 147 LDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENG----PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 147 ~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~----~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~ 222 (458)
+.|...+++.+..++.+.+||...+.. +..+..... ...-+.++++.-++++|+.-+.|.+|+....+.-..+.
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~--~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSV--LSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCce--ehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 455667899999999999999887665 333322111 12223456677799999999999999987433333455
Q ss_pred CCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679 223 GGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 223 ~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
+ |.+.|.++.| ++.++++.+.|..+++|++.+.+......-+|+..|..+.|.|+ .+++++.|.++++|+.+...
T Consensus 173 G-HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~ 249 (967)
T KOG0974|consen 173 G-HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ 249 (967)
T ss_pred c-cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce
Confidence 5 9999999999 79999999999999999999888765567799999999999988 99999999999999766544
Q ss_pred CCCcceeeeeeccccc-ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 301 SNSVTQWLHRLEEHTS-AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~-~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
+..+.+|.. .+..++..+ +..++++++ .|+.+++||+..
T Consensus 250 -------l~~y~~h~g~~iw~~~~~~-~~~~~vT~g--~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 250 -------LEVYDEHSGKGIWKIAVPI-GVIIKVTGG--NDSTLKLWDLNG 289 (967)
T ss_pred -------ehhhhhhhhcceeEEEEcC-CceEEEeec--cCcchhhhhhhc
Confidence 346667754 588888888 466777776 999999999764
No 262
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=4.9e-11 Score=108.34 Aligned_cols=171 Identities=12% Similarity=0.147 Sum_probs=135.2
Q ss_pred EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCCCC
Q 012679 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGGGD 339 (458)
Q Consensus 261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~~d 339 (458)
+-+.+|.+.|.++.|+.++++|++|+.|..+++|.+...-.....+++.... .|...|.|++|.. +...+.+|+ .+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~--~~ 126 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGE--RW 126 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCC--Cc
Confidence 4566899999999999999999999999999999987543333334444443 3558999999998 567777776 99
Q ss_pred CeEEEEECCCCCeeEEEeCCC---CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-ee--EEEeCCCCcEEEEEEcC
Q 012679 340 RCIKFWNTHTGACLNSVDTGS---QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KM--AELSGHTSRVLFMAQSP 413 (458)
Q Consensus 340 ~~i~lwd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~--~~~~~h~~~V~~l~~sp 413 (458)
++|.+.|+.+.+.+..+.+.. .|..+..+|..+.+++++ .++.|.+||.+... .+ ..+.........+.|+|
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t--~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT--RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe--cCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 999999999999988887654 799999999999888865 89999999997654 21 12233445677889999
Q ss_pred C-CCEEEEEeCCCcEEEEecCCCC
Q 012679 414 D-GCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 414 d-g~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
. ..+|++++.-|-+-+||.....
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred CCceeEEeccccCCCCceeecccc
Confidence 4 5677888889999999997654
No 263
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=4.9e-09 Score=97.91 Aligned_cols=211 Identities=14% Similarity=0.138 Sum_probs=142.8
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEE-ecCC-----CCCEE---EEE-EcC-CCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVT-VDDE-----NGPVT---SVN-WAP-DGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~-~~~h-----~~~V~---~v~-~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
+.-+.-...|.|++||.++..++.+-- ++-. ...+. -+. |++ +|.+++..+. |...|.+...+-.++
T Consensus 278 GkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq- 355 (668)
T COG4946 278 GKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ- 355 (668)
T ss_pred CcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE-
Confidence 345666778999999998877544321 0100 01111 111 444 6888887764 567777655444332
Q ss_pred ecCCCcccEEEEEe--CCCeEEEEeCCC-cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 221 LRGGHRSRVGSLAW--NNHILTTGGMDG-LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
.+|...|.-..+ ++.-++.|..|| .+-++|.+++. ++.+...-+.|.++..+++|++++.+.....|.+.|+.
T Consensus 356 --v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 356 --VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred --cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 236677776666 577899999999 89999998765 46667778899999999999999999999999999999
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe-CCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeE
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG-GGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL 374 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~-~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 374 (458)
++.. ...-+...+-|+.++|+|++..+..+- .|..-..|+++|+.+++........+.-.+-+|.|++++|
T Consensus 432 ngnv------~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 432 NGNV------RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred CCCe------eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence 9875 222233457799999999866665542 1233457999999988876554433334444555555554
No 264
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.29 E-value=3.7e-09 Score=99.63 Aligned_cols=259 Identities=15% Similarity=0.247 Sum_probs=173.7
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCC--EE-EEEEcCCCCEEEEEecCCeEEEEeCCCcee-eEEecCCCcccEEEEEeCC
Q 012679 161 STVYLWDASDGTTSELVTVDDENGP--VT-SVNWAPDGRHIAIGLNNCQVQLWDSTANRQ-LRTLRGGHRSRVGSLAWNN 236 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~--V~-~v~~s~~g~~la~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~~ 236 (458)
+.+.+||..+|.+ +..+.....+ .. -+.|+-+.+|+|--..+ .++|+++ +... ...+..-....|...+|.+
T Consensus 108 n~~~vwd~~sg~i--v~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~-sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 108 NNVFVWDIASGMI--VFSFNGISQPYLGWPVLKFSIDDKYVARVVGS-SLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred CceeEEeccCcee--EeeccccCCcccccceeeeeecchhhhhhccC-eEEEEec-CCccccCchhhccccceeeEEecC
Confidence 4799999999998 5555544433 44 67899988887766333 7999997 3322 1112111224566666643
Q ss_pred ----CeEEE-----EeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE-----------CCCcEEEEeC
Q 012679 237 ----HILTT-----GGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG-----------NDNLLHIWDR 296 (458)
Q Consensus 237 ----~~l~s-----g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-----------~dg~i~iwd~ 296 (458)
..|+. ++..+.+++|.+.....+ .+-.-....-+.+.|.+.|++|+.-- ....++|+++
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l-~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~ 262 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVL-VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI 262 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCee-eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence 33333 356788999998755432 22222233446799999999876421 1356788887
Q ss_pred CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEE
Q 012679 297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLS 376 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 376 (458)
..... .....-.++|...+|.|.+..+.+.. |..+-.+.++|++.. +...-....-..+.|+|.++++++
T Consensus 263 ~e~~i-------~V~~~~~~pVhdf~W~p~S~~F~vi~-g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 263 TERSI-------PVEKDLKDPVHDFTWEPLSSRFAVIS-GYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILF 332 (561)
T ss_pred ccccc-------ceeccccccceeeeecccCCceeEEe-cccccceeecccccc--eEEecCCcccccccccCcccEEEE
Confidence 74433 22225578999999999866655544 568999999999876 444444555677889999999988
Q ss_pred Ee-cCCCCcEEEEeCCCceeeE-EEeCCCCcEEEEEEcCCCCEEEEEe------CCCcEEEEecCCCC
Q 012679 377 SH-GFTQNQLTLWKYPSMVKMA-ELSGHTSRVLFMAQSPDGCTVASAA------ADETLRFWNVFGAP 436 (458)
Q Consensus 377 ~~-g~~d~~i~iwd~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s------~Dg~i~iW~~~~~~ 436 (458)
+. |...|.+.+||......+. .+.+... ..+.|+|||+++.+.. .|..|.||++.+..
T Consensus 333 agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 333 AGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 62 3346889999998766555 6665443 4578999999988764 37889999997654
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.29 E-value=5.4e-09 Score=102.12 Aligned_cols=268 Identities=15% Similarity=0.108 Sum_probs=168.0
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEE
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVG 230 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 230 (458)
.+.+++++.++.|+.+|..+|+. +.............. .++..+++++.+|.|..+|..+|+.+..... ......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~--~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~~~~ 139 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKR--LWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKL-SSEVLS 139 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcE--eeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeecc-Cceeec
Confidence 46788888889999999999987 443332222111222 2567888999999999999999998877663 222122
Q ss_pred EEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccce-----EeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679 231 SLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV-----CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT 305 (458)
Q Consensus 231 ~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v-----~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~ 305 (458)
.....+..++.++.+|.|..+|.++++... ........+ .+... .+..++.+..++.+..+|.+++...
T Consensus 140 ~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W-~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~--- 213 (377)
T TIGR03300 140 PPLVANGLVVVRTNDGRLTALDAATGERLW-TYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL--- 213 (377)
T ss_pred CCEEECCEEEEECCCCeEEEEEcCCCceee-EEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe---
Confidence 223356678888899999999998876432 222111111 11111 2346778888899999998887641
Q ss_pred eeeeeecccc--c------ce-eEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEE
Q 012679 306 QWLHRLEEHT--S------AV-KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLS 376 (458)
Q Consensus 306 ~~~~~~~~h~--~------~v-~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 376 (458)
+...+.... . .+ ....+. +..+++++ .++.++.||..+|+.+........ .... ..+..+++
T Consensus 214 -W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~~~-~~p~--~~~~~vyv 284 (377)
T TIGR03300 214 -WEQRVALPKGRTELERLVDVDGDPVVD--GGQVYAVS---YQGRVAALDLRSGRVLWKRDASSY-QGPA--VDDNRLYV 284 (377)
T ss_pred -eeeccccCCCCCchhhhhccCCccEEE--CCEEEEEE---cCCEEEEEECCCCcEEEeeccCCc-cCce--EeCCEEEE
Confidence 111111000 0 00 011111 34455543 789999999999998877654321 1122 24566666
Q ss_pred EecCCCCcEEEEeCCCceeeEEEeCCCCc-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSR-VLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
. ..+|.+..+|..+++.+......... ...... .+..|++++.||.|+++|..+++...+..
T Consensus 285 ~--~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 285 T--DADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred E--CCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 3 47899999999999887665322211 122222 46688899999999999998888776544
No 266
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=3.4e-09 Score=103.56 Aligned_cols=256 Identities=16% Similarity=0.096 Sum_probs=159.7
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccE-
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRV- 229 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v- 229 (458)
.+.+++++.++.|+.+|..+|+. +..... .+.+.+.-.. .+..+++++.+|.|..||.++++.+..+.. ....+
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~--~W~~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~ 179 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKE--LWRAKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSR-VTPALT 179 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcE--eeeecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEcc-CCCcee
Confidence 46678888899999999999987 333322 1222221111 355778888899999999999998887764 21111
Q ss_pred ----EEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc---c---eEeEEEcC--CCCEEEEEECCCcEEEEeCC
Q 012679 230 ----GSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ---E---VCGLKWSA--SGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 230 ----~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~---~---v~~l~~sp--d~~~l~sg~~dg~i~iwd~~ 297 (458)
.+....+..++.+..+|.+..+|.+++......-..... . ...+.-+| .+..++.++.+|.++.||..
T Consensus 180 ~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 180 LRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred ecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence 111223457888888999999999887643221111000 0 00010111 35678888889999999998
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCC-eEEEEEcCCCCeEE
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQ-VCALLWNKNERELL 375 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~-v~~~~~s~~~~~l~ 375 (458)
+++. +..... ......+. .+..+++. + .||.|..+|..+|+.+.... .... ..+... .+..++
T Consensus 260 tG~~------~W~~~~--~~~~~p~~--~~~~vyv~-~--~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~ 324 (377)
T TIGR03300 260 SGRV------LWKRDA--SSYQGPAV--DDNRLYVT-D--ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLV 324 (377)
T ss_pred CCcE------EEeecc--CCccCceE--eCCEEEEE-C--CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEE
Confidence 7754 222221 11112222 23455543 3 79999999999999887653 2222 222222 355666
Q ss_pred EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEE-EEEcCCCCEEEEEeCCCcEEEE
Q 012679 376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLF-MAQSPDGCTVASAAADETLRFW 430 (458)
Q Consensus 376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~-l~~spdg~~l~s~s~Dg~i~iW 430 (458)
+ +..+|.|.++|..+++.+.++..+...+.. .++. ++ .|+.++.||.|..|
T Consensus 325 ~--~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 325 V--GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred E--EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 6 458999999999999999988866644322 2222 33 57789999999876
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.26 E-value=1.4e-08 Score=108.30 Aligned_cols=271 Identities=15% Similarity=0.249 Sum_probs=171.8
Q ss_pred CCeEEEEcCCEEEEE----ECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC--------------
Q 012679 152 SNVLAIALGSTVYLW----DASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST-------------- 213 (458)
Q Consensus 152 ~~~la~~~d~~v~iw----d~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~-------------- 213 (458)
+.++.+..+|.|.+. +..+..++.+-.+ ...|.+++||||+..||..+.+|+|.+-+-.
T Consensus 88 ~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~ 164 (928)
T PF04762_consen 88 ESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDF 164 (928)
T ss_pred CcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence 568888889999999 7777776656555 4579999999999999999999988876411
Q ss_pred -C--------ceeeEEecC--------------------C---CcccEEEEEe--CCCeEEEEeC---C---CcEEEEEc
Q 012679 214 -A--------NRQLRTLRG--------------------G---HRSRVGSLAW--NNHILTTGGM---D---GLIINNDV 253 (458)
Q Consensus 214 -~--------~~~~~~~~~--------------------~---~~~~v~~l~~--~~~~l~sg~~---d---g~i~vwd~ 253 (458)
. |+.-..|++ + +...-..|+| ||.++++.+. . ..|+||+-
T Consensus 165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R 244 (928)
T PF04762_consen 165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR 244 (928)
T ss_pred CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC
Confidence 0 111111111 0 2224457889 6788888764 2 46888986
Q ss_pred cCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC---CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN---DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330 (458)
Q Consensus 254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 330 (458)
+ +. +..+...-.+--.+++|.|.|++||+.-. ...|.+|.-+..... ++...+......|..++|++++.-|
T Consensus 245 e-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg---eF~l~~~~~~~~v~~l~Wn~ds~iL 319 (928)
T PF04762_consen 245 E-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG---EFTLRFDPEEEKVIELAWNSDSEIL 319 (928)
T ss_pred C-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee---eEecCCCCCCceeeEEEECCCCCEE
Confidence 5 22 22222222333446899999999998865 456777775543321 1122233456789999999975544
Q ss_pred EEEeCCCCCCeEEEEECCCCCee--EEEe--CCCCeEEEEEcCCCCe-EEEEecCCCCcEEEEeC----CCc--------
Q 012679 331 LATGGGGGDRCIKFWNTHTGACL--NSVD--TGSQVCALLWNKNERE-LLSSHGFTQNQLTLWKY----PSM-------- 393 (458)
Q Consensus 331 l~s~~g~~d~~i~lwd~~~~~~~--~~~~--~~~~v~~~~~s~~~~~-l~~~~g~~d~~i~iwd~----~~~-------- 393 (458)
|..- .| .|.+|-..+.... +.+. ....+..+.|+|.... |.+.+ .+|.+..+++ ..+
T Consensus 320 -Av~~--~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t--~~g~~~~~~~~~~v~~s~~~~~~D~ 393 (928)
T PF04762_consen 320 -AVWL--ED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT--SNGQYEIYDFAWDVSRSPGSSPNDN 393 (928)
T ss_pred -EEEe--cC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe--cCCcEEEEEEEEEEEecCCCCccCc
Confidence 4442 34 4999998886532 3333 2344566999996544 33322 3355544332 111
Q ss_pred eeeEEEe-----------------------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 394 VKMAELS-----------------------GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 394 ~~~~~~~-----------------------~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
..+..+. .-...|.+++|++++..+++-..||.|.+|......
T Consensus 394 g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 394 GTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred eEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 0111111 124679999999999889999999999999965543
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=3.2e-11 Score=127.77 Aligned_cols=185 Identities=16% Similarity=0.239 Sum_probs=148.1
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 231 (458)
-..++++.||.|++|....++........+. ..|+.+.|+.+|+.+.++..||.+.+|.+. .+.....+. |......
T Consensus 2221 ~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc-hnk~~~D 2297 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC-HNKALSD 2297 (2439)
T ss_pred ceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc-CCccccc
Confidence 3578999999999999988876545555554 889999999999999999999999999977 555666666 9999999
Q ss_pred EEeCCCeEEEEe---CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679 232 LAWNNHILTTGG---MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL 308 (458)
Q Consensus 232 l~~~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 308 (458)
+.|=+..+++++ .++.+.+||.-........-..|.+.++++++-|..++|++||.+|.|++||++..+. +
T Consensus 2298 f~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql------~ 2371 (2439)
T KOG1064|consen 2298 FRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL------R 2371 (2439)
T ss_pred eeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH------H
Confidence 999778888775 4689999997544332223378999999999999999999999999999999987665 4
Q ss_pred eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC
Q 012679 309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT 358 (458)
Q Consensus 309 ~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~ 358 (458)
+.+.. +. ....+++|+ ..|.|+||++..-..++++..
T Consensus 2372 h~~~~---------~~--~~~~f~~~s--s~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2372 HTFQA---------LD--TREYFVTGS--SEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred HHhhh---------hh--hhheeeccC--cccceEEEEccccchhhcCch
Confidence 44433 33 466777766 999999999998877776643
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.25 E-value=5e-10 Score=98.44 Aligned_cols=228 Identities=17% Similarity=0.204 Sum_probs=147.4
Q ss_pred CeEEEEcCCEEEEEECCCCCe-eeEEEecCCCC---CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE--EecCCCc
Q 012679 153 NVLAIALGSTVYLWDASDGTT-SELVTVDDENG---PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR--TLRGGHR 226 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~-~~~~~~~~h~~---~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~--~~~~~~~ 226 (458)
+++-+-..|.|.++....... ..+..+..-.- ...++.|++.+..++++..+|.+.+-+........ ..+. |.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He 165 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HE 165 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cc
Confidence 345555678888887553322 11111211111 24578899999999999999999966655544333 6666 99
Q ss_pred ccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeE-EEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCC
Q 012679 227 SRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 227 ~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
.++....| +++++.+|+.||.+..||++.....+ ...+-|...|++|.-+| .+.++++|+.|-.|++||.++...
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 99999988 47899999999999999999554333 44667999999999887 688999999999999999996544
Q ss_pred CCcceeeeeecccccceeEEEecCCCCc-EEEEeCCCCCCeEEEEECCCCCee--EEEe----CCCCeEEEEEcCCCCeE
Q 012679 302 NSVTQWLHRLEEHTSAVKAIAWCPFQSN-LLATGGGGGDRCIKFWNTHTGACL--NSVD----TGSQVCALLWNKNEREL 374 (458)
Q Consensus 302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~-ll~s~~g~~d~~i~lwd~~~~~~~--~~~~----~~~~v~~~~~s~~~~~l 374 (458)
+ +..- .-.+.|..+.++|.... +++++ .-+-.++-+...+... ..+. +.+-...-.|.....++
T Consensus 246 P-----l~~~-~v~GGVWRi~~~p~~~~~lL~~C---Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~l 316 (339)
T KOG0280|consen 246 P-----LFKA-KVGGGVWRIKHHPEIFHRLLAAC---MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFL 316 (339)
T ss_pred c-----cccC-ccccceEEEEecchhhhHHHHHH---HhcCceEEEecccccchheeeeccccccceeecccccccccee
Confidence 2 2222 23488999999996543 33333 3344566666554322 1111 12223344454443445
Q ss_pred EEEecCCCCcEE-EEeCC
Q 012679 375 LSSHGFTQNQLT-LWKYP 391 (458)
Q Consensus 375 ~~~~g~~d~~i~-iwd~~ 391 (458)
+++ .+-|+.++ +|-.-
T Consensus 317 ATC-sFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 317 ATC-SFYDKKIRQLWLHI 333 (339)
T ss_pred eee-eccccceeeeeeec
Confidence 554 34455533 66443
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=8.1e-11 Score=124.81 Aligned_cols=197 Identities=15% Similarity=0.319 Sum_probs=158.9
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCe
Q 012679 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDH 258 (458)
Q Consensus 181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~ 258 (458)
.+-..|.++.-+|...+-++|+.||.|++|....+..+..++....++|+.+.|+ |+.+..+..||.+.+|.+. ..
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PK 2283 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Cc
Confidence 3456688998899888999999999999999999998888886566899999994 8999999999999999986 44
Q ss_pred eEEEEcccccceEeEEEcCCCCEEEEEE---CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679 259 IVETYRGHNQEVCGLKWSASGQQLASGG---NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 259 ~~~~~~~h~~~v~~l~~spd~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
+....+.|......+.|-. ..+++++ .++.+.+||....... .+++ ..|.+.++++++.| ...++++||
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~---s~v~--~~H~~gaT~l~~~P-~~qllisgg 2355 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN---SLVH--TCHDGGATVLAYAP-KHQLLISGG 2355 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc---ceee--eecCCCceEEEEcC-cceEEEecC
Confidence 5677788998888888865 5667665 4788999997655432 1234 68999999999999 477888877
Q ss_pred CCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe
Q 012679 336 GGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS 400 (458)
Q Consensus 336 g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~ 400 (458)
.+|.|++||++..+.++.+.. ++ ...+++. |...|.|+||++.....+.++.
T Consensus 2356 --r~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~--~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2356 --RKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVT--GSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred --CcCcEEEeehHHHHHHHHhhh--------hh-hhheeec--cCcccceEEEEccccchhhcCc
Confidence 999999999998887776654 44 4455555 7789999999999887777664
No 271
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=4.5e-09 Score=100.15 Aligned_cols=251 Identities=14% Similarity=0.227 Sum_probs=164.8
Q ss_pred eeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCC--CEEEE-----EecCCeEEEEeCCCcee
Q 012679 146 LLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDG--RHIAI-----GLNNCQVQLWDSTANRQ 217 (458)
Q Consensus 146 ~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~~la~-----g~~dg~v~iwd~~~~~~ 217 (458)
+..|+. +.+++--..+.|++|+..+.+. .... -|...|+...+||.+ ..+|+ ++.-+.|+||.......
T Consensus 130 ~~qfs~dEsl~arlv~nev~f~~~~~f~~-~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVSNEVQFYDLGSFKT-IQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred ccccccchhhhhhhhcceEEEEecCCccc-eeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 345665 4466666689999999887442 1222 346679999999863 34544 24445799998763222
Q ss_pred eEEe--cCCCcccEEEEEeC--C-CeEEEEe--CC---------CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCE
Q 012679 218 LRTL--RGGHRSRVGSLAWN--N-HILTTGG--MD---------GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ 281 (458)
Q Consensus 218 ~~~~--~~~~~~~v~~l~~~--~-~~l~sg~--~d---------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~ 281 (458)
-..+ +.-....-..+.|+ + .+|+.++ -| .++++.++. +......+ ...++|.++.|+|+++.
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L-~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPL-LKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEec-CCCCCceEEEECCCCCE
Confidence 1111 11122334467786 2 3443332 23 257777776 33222222 34789999999999998
Q ss_pred EEEE--ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC
Q 012679 282 LASG--GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG 359 (458)
Q Consensus 282 l~sg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~ 359 (458)
++++ -.-..+.|+|++... +..+ ..++=.++-|+|.|..++++|-|..-|.|.+||+.+.+++..+...
T Consensus 285 F~VvyGfMPAkvtifnlr~~~-------v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~ 355 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRGKP-------VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA 355 (566)
T ss_pred EEEEEecccceEEEEcCCCCE-------eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence 8664 446789999987642 3333 4567788999999999999998989999999999998888777543
Q ss_pred CCeEEEEEcCCCCeEEEEecC----CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679 360 SQVCALLWNKNERELLSSHGF----TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP 413 (458)
Q Consensus 360 ~~v~~~~~s~~~~~l~~~~g~----~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp 413 (458)
.-+-+.|+|+|.++++++.. -|+.++||++.. ..+....- ......+.|-|
T Consensus 356 -~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG-~~l~~~~f-~sEL~qv~W~P 410 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG-SLLHEKMF-KSELLQVEWRP 410 (566)
T ss_pred -CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC-ceeehhhh-hHhHhheeeee
Confidence 34567899999999998754 388999999853 33322111 11355666665
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=2.8e-08 Score=107.89 Aligned_cols=244 Identities=11% Similarity=0.100 Sum_probs=157.3
Q ss_pred EEEEEcCC-CCEEEEEecCCeEEEEeCCCceeeEEecC-CC------------cccEEEEEeC--CCeEEEEe-CCCcEE
Q 012679 187 TSVNWAPD-GRHIAIGLNNCQVQLWDSTANRQLRTLRG-GH------------RSRVGSLAWN--NHILTTGG-MDGLII 249 (458)
Q Consensus 187 ~~v~~s~~-g~~la~g~~dg~v~iwd~~~~~~~~~~~~-~~------------~~~v~~l~~~--~~~l~sg~-~dg~i~ 249 (458)
..++++++ |.++++-+.++.|++||... ..+..+.. +. -.....++++ ++.|+++. ....|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 55666667788899999764 44443332 11 1234667774 55555554 456789
Q ss_pred EEEccCCCeeEEEEccc-----------------ccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcce--eee
Q 012679 250 NNDVRVRDHIVETYRGH-----------------NQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQ--WLH 309 (458)
Q Consensus 250 vwd~~~~~~~~~~~~~h-----------------~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~ 309 (458)
++|+.++. +.++.+. -..-.+++++| ++.++++.+.++.|++||...+....... ...
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99986543 3333210 11235789999 56666777788999999987653210000 000
Q ss_pred eecc------cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-----------C-----------CCC
Q 012679 310 RLEE------HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-----------T-----------GSQ 361 (458)
Q Consensus 310 ~~~~------h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-----------~-----------~~~ 361 (458)
...+ .-.....|+++|++..++++.. .++.|++||+.++....... . ...
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 0001 1123567999999887888776 78999999998775322110 0 012
Q ss_pred eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-------------CCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 012679 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-------------GHTSRVLFMAQSPDGCTVASAAADETLR 428 (458)
Q Consensus 362 v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-------------~h~~~V~~l~~spdg~~l~s~s~Dg~i~ 428 (458)
...++++++|..+++ ...++.|++||..++....... +.-.....|+++++|+.+++-+.++.|+
T Consensus 806 P~Gvavd~dG~LYVA--Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 806 PLGVLCAKDGQIYVA--DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CceeeEeCCCcEEEE--ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 458899999986666 4478999999998776543221 1123577899999999999888999999
Q ss_pred EEecCCCCc
Q 012679 429 FWNVFGAPQ 437 (458)
Q Consensus 429 iW~~~~~~~ 437 (458)
+||+.++..
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999987654
No 273
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=6.3e-09 Score=93.51 Aligned_cols=243 Identities=12% Similarity=0.221 Sum_probs=158.0
Q ss_pred cceeec--cCCCeEEEEcCCEEEEEECCC---CCeeeEEEecCC------------CCCEEEEEEcCCCC--EEEEEecC
Q 012679 144 LNLLDW--GSSNVLAIALGSTVYLWDASD---GTTSELVTVDDE------------NGPVTSVNWAPDGR--HIAIGLNN 204 (458)
Q Consensus 144 ~~~~~~--~~~~~la~~~d~~v~iwd~~~---~~~~~~~~~~~h------------~~~V~~v~~s~~g~--~la~g~~d 204 (458)
+.++.+ .++.+++|..+|.|.++.-+. ++..-...+..| ...|..+.|.++++ .++..+.|
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 334444 346788888899999996432 211112223222 34688999998654 67778899
Q ss_pred CeEEEEeCCCce-----------------------------------eeEEecCCCcccEEEEEeCC-CeEEEEeCCCcE
Q 012679 205 CQVQLWDSTANR-----------------------------------QLRTLRGGHRSRVGSLAWNN-HILTTGGMDGLI 248 (458)
Q Consensus 205 g~v~iwd~~~~~-----------------------------------~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i 248 (458)
.+|++|.+.... +.+.+...|.--|.+++++. ...+....|=.|
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRI 187 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRI 187 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceee
Confidence 999999764321 11223336888889999953 334444566789
Q ss_pred EEEEccCCCeeEE--EEcc-----cccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCC-----c-----ceeeee
Q 012679 249 INNDVRVRDHIVE--TYRG-----HNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNS-----V-----TQWLHR 310 (458)
Q Consensus 249 ~vwd~~~~~~~~~--~~~~-----h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~-----~-----~~~~~~ 310 (458)
.+|.++....... -++. -..-|++..|+| ..+.|+..+..|+|++-|++....-. . .....-
T Consensus 188 NLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsf 267 (433)
T KOG1354|consen 188 NLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSF 267 (433)
T ss_pred eeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhh
Confidence 9999876543222 2222 234588999999 46788888999999999998532200 0 000111
Q ss_pred ecccccceeEEEecCCCCcEEEEeCCCCC-CeEEEEEC-CCCCeeEEEeCCC----------------CeEEEEEcCCCC
Q 012679 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGD-RCIKFWNT-HTGACLNSVDTGS----------------QVCALLWNKNER 372 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-~~i~lwd~-~~~~~~~~~~~~~----------------~v~~~~~s~~~~ 372 (458)
+.+--..|..+.|++.|.++++ .| -+|++||+ ...+++.++..+. .-..++|+.++.
T Consensus 268 fseiIsSISDvKFs~sGryils-----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 268 FSEIISSISDVKFSHSGRYILS-----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred HHHHhhhhhceEEccCCcEEEE-----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 2233456889999998777775 44 78999999 4566666664322 134678999998
Q ss_pred eEEEEecCCCCcEEEEeCCCc
Q 012679 373 ELLSSHGFTQNQLTLWKYPSM 393 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~~ 393 (458)
.+++ |.-.+.+++|+...+
T Consensus 343 ~v~T--Gsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 343 YVMT--GSYNNVFRVFNLARG 361 (433)
T ss_pred eEec--ccccceEEEecCCCC
Confidence 9888 778889999996433
No 274
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=4.8e-08 Score=93.09 Aligned_cols=280 Identities=13% Similarity=0.171 Sum_probs=177.8
Q ss_pred ccccceeeccCC-CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec-----------CCeEE
Q 012679 141 DYYLNLLDWGSS-NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN-----------NCQVQ 208 (458)
Q Consensus 141 d~~~~~~~~~~~-~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~-----------dg~v~ 208 (458)
.+.-+-+.|+|. ..++.---..|.+|--++-.. +..+. |. .|.-+.|||..+||++-+. ...+.
T Consensus 210 nWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r--~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 210 NWTETYVRWSPKGTYLVTFHKQGIALWGGESFDR--IQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred cceeeeEEecCCceEEEEEeccceeeecCccHHH--HHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 445566889984 444444556788996554332 44443 54 4899999999999998642 14799
Q ss_pred EEeCCCceeeEEecCC--CcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEE
Q 012679 209 LWDSTANRQLRTLRGG--HRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLAS 284 (458)
Q Consensus 209 iwd~~~~~~~~~~~~~--~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s 284 (458)
|||+.+|...+.+... ....-.-+.| +++++|.-.. ..|.||+...-. ++..-.-.-..|....|+|.+++||.
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee-eecccccCCccccCcccCCCcceEEE
Confidence 9999999998888751 1111123345 6778777666 568889876422 12111123456888999999888876
Q ss_pred EECC-----CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC-------CCCCeEEEEECCCC-C
Q 012679 285 GGND-----NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG-------GGDRCIKFWNTHTG-A 351 (458)
Q Consensus 285 g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g-------~~d~~i~lwd~~~~-~ 351 (458)
-... ..+.+-.+.+.+. +.+..-|.-.=..+-|-..|.+|.+-... +.-..+.|+.++.. -
T Consensus 364 wtpe~~~~parvtL~evPs~~~------iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI 437 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKRE------IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI 437 (698)
T ss_pred EcccccCCcceEEEEecCccce------eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence 4321 2344544444433 33322333333456676665555442210 01123556666543 3
Q ss_pred eeEEEeCCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEeCCC----ceeeEEEeCCCCcEEEEEEcCCCCEEEEEe---C
Q 012679 352 CLNSVDTGSQVCALLWNKNERELLSSHGFT-QNQLTLWKYPS----MVKMAELSGHTSRVLFMAQSPDGCTVASAA---A 423 (458)
Q Consensus 352 ~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd~~~----~~~~~~~~~h~~~V~~l~~spdg~~l~s~s---~ 423 (458)
++..+.....|...+|-|.|..+++.+|.. ..++.+|.+.+ ...+..+.. ...+.+.|+|.|++++.++ .
T Consensus 438 pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~ 515 (698)
T KOG2314|consen 438 PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSR 515 (698)
T ss_pred CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEeccc
Confidence 566677788899999999999999887754 35788898873 223334432 4467899999999998775 4
Q ss_pred CCcEEEEecCC
Q 012679 424 DETLRFWNVFG 434 (458)
Q Consensus 424 Dg~i~iW~~~~ 434 (458)
.|.+.++|...
T Consensus 516 ~g~l~F~D~~~ 526 (698)
T KOG2314|consen 516 RGDLEFYDTDY 526 (698)
T ss_pred ccceEEEecch
Confidence 68999999985
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.09 E-value=8.1e-09 Score=91.59 Aligned_cols=240 Identities=15% Similarity=0.296 Sum_probs=167.0
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-----eeEEecCCCc------------ccEEEEEe-C---CCeEEE
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-----QLRTLRGGHR------------SRVGSLAW-N---NHILTT 241 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-----~~~~~~~~~~------------~~v~~l~~-~---~~~l~s 241 (458)
.+.|++|.|...|.||++|...|.|.+|.-+... ....+++ |. ..|..+.| + ...++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQs-he~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQS-HELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcc-cccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 5679999999999999999999999999754332 1222333 32 45778888 1 356777
Q ss_pred EeCCCcEEEEEccCCCe------------------------------------eE-----EEE-cccccceEeEEEcCCC
Q 012679 242 GGMDGLIINNDVRVRDH------------------------------------IV-----ETY-RGHNQEVCGLKWSASG 279 (458)
Q Consensus 242 g~~dg~i~vwd~~~~~~------------------------------------~~-----~~~-~~h~~~v~~l~~spd~ 279 (458)
.+.|.+|++|.+..... ++ +.+ ..|...|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78899999998864310 00 111 3677788999999988
Q ss_pred CEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc-----ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee-
Q 012679 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH-----TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL- 353 (458)
Q Consensus 280 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~- 353 (458)
..++++ .|-.|.+|++........ +..++.| ..-|++..|+|...+++.-.+ ..|.|++-|++.....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFn---IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFN---IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLNDLRQSALCD 258 (460)
T ss_pred heeeec-cceeeeeccccccCCceE---EEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEehhhhhhhhcc
Confidence 888776 568899999876554211 3333444 346889999998777776655 7899999999843211
Q ss_pred -----E--EEe---------CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-eeeEEEeCCC------------C
Q 012679 354 -----N--SVD---------TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-VKMAELSGHT------------S 404 (458)
Q Consensus 354 -----~--~~~---------~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-~~~~~~~~h~------------~ 404 (458)
. .++ .-+.|..+.|+++|+++++- +-.+++|||.... .++.++.-|. .
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR---dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR---DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe---ccceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 0 111 12457889999999999973 4578999999753 4555554342 2
Q ss_pred cE---EEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 405 RV---LFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 405 ~V---~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
.| ..+.||-|...+++|+.....-|+-+
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeecc
Confidence 22 34778888888999988877777763
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=4.6e-09 Score=102.59 Aligned_cols=237 Identities=16% Similarity=0.286 Sum_probs=163.3
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee---------------eEEecCCCcccEEEEEeC--CCeEEEEeCC
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ---------------LRTLRGGHRSRVGSLAWN--NHILTTGGMD 245 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~---------------~~~~~~~~~~~v~~l~~~--~~~l~sg~~d 245 (458)
.....|++|+.+..|+|+|+.||.++|..+.+... -+++.+ |...|.-+.|| ...|.+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccccCCC
Confidence 45689999999999999999999999997765321 123444 99999999996 5789999999
Q ss_pred CcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEec
Q 012679 246 GLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324 (458)
Q Consensus 246 g~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 324 (458)
|.|.+|-+-.+..+...+. ...+-|.+++|+.||..++..-.||.|.+=.+..... +-..+++ .....+.|+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-----wgKeLkg--~~l~hv~ws 165 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-----WGKELKG--QLLAHVLWS 165 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-----cchhcch--heccceeec
Confidence 9999999877654322222 3456789999999999999999999998766654432 1112222 123468899
Q ss_pred CCCCcEEEEeCCCCCCeEEEEECCCC-------CeeEEEe-----CCCCeEEEEEc--------CCCCeEEEEecCCCCc
Q 012679 325 PFQSNLLATGGGGGDRCIKFWNTHTG-------ACLNSVD-----TGSQVCALLWN--------KNERELLSSHGFTQNQ 384 (458)
Q Consensus 325 p~~~~ll~s~~g~~d~~i~lwd~~~~-------~~~~~~~-----~~~~v~~~~~s--------~~~~~l~~~~g~~d~~ 384 (458)
+|...+++.- ..|.+.++|.... .+..... .+..+..+.|. |+...+++ .+.+|.
T Consensus 166 ~D~~~~Lf~~---ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav--cy~nGr 240 (1189)
T KOG2041|consen 166 EDLEQALFKK---ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV--CYANGR 240 (1189)
T ss_pred ccHHHHHhhh---cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE--EEcCce
Confidence 9877766633 7899999997642 1211111 12336666664 36667777 447888
Q ss_pred EEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEecC
Q 012679 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD---------ETLRFWNVF 433 (458)
Q Consensus 385 i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---------g~i~iW~~~ 433 (458)
+.|..-.+......+. ..-.|....|+++|..|+.+|.| +.|.++.-.
T Consensus 241 ~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY 297 (1189)
T ss_pred ehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence 8776554432222222 22568899999999999999865 256666544
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.07 E-value=2e-08 Score=90.37 Aligned_cols=250 Identities=15% Similarity=0.231 Sum_probs=175.9
Q ss_pred eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEe-CCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEE
Q 012679 174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD-STANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIIN 250 (458)
Q Consensus 174 ~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd-~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~v 250 (458)
..+..++||.+.|++...-|-..-+++.+.|.+++||- .+.++.-..+......+++++++. ...|+.|-..|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 33567789999999999988777899999999999994 455665555554456778888885 478899999999988
Q ss_pred EEccCCC---eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679 251 NDVRVRD---HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327 (458)
Q Consensus 251 wd~~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 327 (458)
+.+...- ...+....|...|..+-|+....++++.+.|..+.---.+.+..... ..+.. .-.++.+.-
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~----Y~~~~---~~t~~~~d~-- 165 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGG----YNFET---PASALQFDA-- 165 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccc----eEeec---cCCCCceee--
Confidence 8765332 23456678999999999999999999999987765433333322100 00100 001111110
Q ss_pred CcEEEEeCCCCCCeEEEEEC--CCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-eeEEEeCCC
Q 012679 328 SNLLATGGGGGDRCIKFWNT--HTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KMAELSGHT 403 (458)
Q Consensus 328 ~~ll~s~~g~~d~~i~lwd~--~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~~~~~~h~ 403 (458)
. .... |...|.|..-.+ ..-..+.++. +...+.++.|.+....+++ |..|..+.+||+.-.+ ...++.+|.
T Consensus 166 ~-~~fv--Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfS--g~~d~~vi~wdigg~~g~~~el~gh~ 240 (404)
T KOG1409|consen 166 L-YAFV--GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFS--GASDHSVIMWDIGGRKGTAYELQGHN 240 (404)
T ss_pred E-EEEe--cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEe--ccccCceEEEeccCCcceeeeeccch
Confidence 0 1222 224444444332 2233444443 4577999999999999999 7799999999997654 345788999
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679 404 SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 404 ~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
..|..+..-+--+.+++++.||.|.+|+......
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 9999999888888999999999999999976543
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.06 E-value=3.2e-09 Score=97.38 Aligned_cols=159 Identities=17% Similarity=0.213 Sum_probs=108.6
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEeCCCcee----eEEecCCCcccEEEEEe--CCCeEEEEeC---CCcEEEEEccCC
Q 012679 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ----LRTLRGGHRSRVGSLAW--NNHILTTGGM---DGLIINNDVRVR 256 (458)
Q Consensus 186 V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~----~~~~~~~~~~~v~~l~~--~~~~l~sg~~---dg~i~vwd~~~~ 256 (458)
+..+..++++++||++..+....+++...... +.... -..+-.++.+ .......+.. ...+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 44556778888999988887776776654332 22221 2222233333 2233333333 344445554432
Q ss_pred CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee-ecccccceeEEEecCCCCcEEEEeC
Q 012679 257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR-LEEHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
....+.||-..++.++|+||+++|+++..|..|+|-.+..... +.. .-+|..-|..++.-++ ++|+++|
T Consensus 143 --~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~------IesfclGH~eFVS~isl~~~--~~LlS~s 212 (390)
T KOG3914|consen 143 --RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV------IESFCLGHKEFVSTISLTDN--YLLLSGS 212 (390)
T ss_pred --CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc------hhhhccccHhheeeeeeccC--ceeeecC
Confidence 2356679999999999999999999999999999977665443 333 3479999999999884 5577766
Q ss_pred CCCCCeEEEEECCCCCeeEEEeC
Q 012679 336 GGGDRCIKFWNTHTGACLNSVDT 358 (458)
Q Consensus 336 g~~d~~i~lwd~~~~~~~~~~~~ 358 (458)
.|++|++||+.+|+++.+++.
T Consensus 213 --GD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 213 --GDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred --CCCcEEEEecccCCcccccch
Confidence 799999999999999877654
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.06 E-value=1.7e-07 Score=81.78 Aligned_cols=231 Identities=11% Similarity=-0.019 Sum_probs=152.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEE---EeCCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc--
Q 012679 194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSL---AWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ-- 268 (458)
Q Consensus 194 ~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l---~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~-- 268 (458)
...+||.|+..|.+.+|...+.+....+-..|...|.-+ +-....+..++.|.++++.++..+.. ....|..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~---~~~~h~~~~ 159 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN---KFAVHNQNL 159 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc---cceeecccc
Confidence 456899999999999999987664433332244433322 22345577778888888888765432 1112333
Q ss_pred ceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679 269 EVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH 348 (458)
Q Consensus 269 ~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~ 348 (458)
.+.++++++|++++++.+....|..|.+......... .........-.+..|+. ....+|++. .||++.+||++
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~---~~~a~t~D~gF~~S~s~-~~~~FAv~~--Qdg~~~I~DVR 233 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN---IYEAPTSDHGFYNSFSE-NDLQFAVVF--QDGTCAIYDVR 233 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee---eEecccCCCceeeeecc-CcceEEEEe--cCCcEEEEEec
Confidence 3889999999999999999999999998776542111 12222333445778887 466777776 99999999999
Q ss_pred CCCeeE-EE-----eCCCCeEEEEEcCCCC--eEEEEecCCCCcEEEEeCCCceeeEEEeC-------CC-CcEEEEEEc
Q 012679 349 TGACLN-SV-----DTGSQVCALLWNKNER--ELLSSHGFTQNQLTLWKYPSMVKMAELSG-------HT-SRVLFMAQS 412 (458)
Q Consensus 349 ~~~~~~-~~-----~~~~~v~~~~~s~~~~--~l~~~~g~~d~~i~iwd~~~~~~~~~~~~-------h~-~~V~~l~~s 412 (458)
...... .. .+.+.+..+.|++.|. .|+.+- .-+.+.+.|++++.....+.. |. ..|..-.|+
T Consensus 234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE--hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE--HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec--CcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence 754322 22 3456789999998653 344432 456899999998876554432 32 237778888
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCC
Q 012679 413 PDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 413 pdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
.++..+.+.+++ .+.=|++....
T Consensus 312 ~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 312 NENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred CCCcccccccch-hhheeeccccc
Confidence 887777666655 45567765443
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.06 E-value=6.9e-07 Score=79.15 Aligned_cols=238 Identities=16% Similarity=0.250 Sum_probs=131.0
Q ss_pred CCCeEEEEcCCEEEEEECCCCCee--eEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcc
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTS--ELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS 227 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~--~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~ 227 (458)
.++++|+-.|..|.|-...+.-.. ..+.+. ...-.-.-++||||+..||.+...|+|+++|+.. ..+..+...+.
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~- 85 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMS- 85 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccc-
Confidence 478999999999999987764221 222232 2223467899999999999999999999999876 34445543121
Q ss_pred cEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC------CCEEEEEECCCcEEEEeCCCCCC
Q 012679 228 RVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS------GQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 228 ~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd------~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
+.+ |+ ...|.++.|.+. ...|++-..+|.++=|-+..+..
T Consensus 86 ------~~~---------------d~-------------~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~ 131 (282)
T PF15492_consen 86 ------FPG---------------DL-------------SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN 131 (282)
T ss_pred ------cCC---------------cc-------------ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccC
Confidence 101 00 111222222110 12344455566666555432211
Q ss_pred C-Ccceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCC----------eEEEEECCCCCeeEEEeCCCCeEEEEEcC
Q 012679 302 N-SVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDR----------CIKFWNTHTGACLNSVDTGSQVCALLWNK 369 (458)
Q Consensus 302 ~-~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~----------~i~lwd~~~~~~~~~~~~~~~v~~~~~s~ 369 (458)
. ........+.. +...|.++.++|. ..||++|| .... -+..|.+-++.+.... ..+.
T Consensus 132 q~y~e~hsfsf~~~yp~Gi~~~vy~p~-h~LLlVgG-~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~---------v~~~ 200 (282)
T PF15492_consen 132 QGYQENHSFSFSSHYPHGINSAVYHPK-HRLLLVGG-CEQNQDGMSKASSCGLTAWRILSDSPYYKQ---------VTSS 200 (282)
T ss_pred CcceeeEEEEecccCCCceeEEEEcCC-CCEEEEec-cCCCCCccccccccCceEEEEcCCCCcEEE---------cccc
Confidence 1 11111223333 3678999999995 45555553 1222 1233333332221111 0000
Q ss_pred CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
+...-. ......+|.+.+.............|..|..||||..||+...+|.|.+|++-.-....+
T Consensus 201 ~~~~~~-----~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 201 EDDITA-----SSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred Cccccc-----cccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 000000 011223455444333332233457799999999999999999999999999977655544
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=6.9e-07 Score=87.75 Aligned_cols=214 Identities=7% Similarity=0.011 Sum_probs=131.3
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCE-EEEEecC---CeEEEEeCCCceeeEEecCCCcccEEEEEe--
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRH-IAIGLNN---CQVQLWDSTANRQLRTLRGGHRSRVGSLAW-- 234 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~-la~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-- 234 (458)
..|++-|.+.... +... .+ +.+..-.|+|||+. ++..+.+ ..|.++|+.+++...... .........|
T Consensus 169 ~~l~~~d~dg~~~-~~~~-~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTYQ-KVIV-KG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCce-eEEc-cC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECC
Confidence 3677777765543 2222 22 36889999999985 6654443 468999998887654433 3444555667
Q ss_pred CCCeEE-EEeCC--CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CC--cEEEEeCCCCCCCCcceee
Q 012679 235 NNHILT-TGGMD--GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN--LLHIWDRSMASSNSVTQWL 308 (458)
Q Consensus 235 ~~~~l~-sg~~d--g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~ 308 (458)
++..|+ +.+.+ ..|.++|+..+. ...+..+........|+|||+.|+..++ .+ .|++.|+..+..
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~------- 313 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV------- 313 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-------
Confidence 565544 44444 468888887654 2344434433445689999998877664 23 677888876553
Q ss_pred eeecccccceeEEEecCCCCcEEEEeCCCC-----C-CeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCC
Q 012679 309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGG-----D-RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ 382 (458)
Q Consensus 309 ~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~-----d-~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d 382 (458)
..+...... ...|+|++..++++..... . ..|.+.|+.++.... +..........|+|+|+.++.+.....
T Consensus 314 ~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 314 EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCC
Confidence 122111111 2489999999988875211 1 478889998887543 333334446889999998887653221
Q ss_pred -CcEEEEeCCC
Q 012679 383 -NQLTLWKYPS 392 (458)
Q Consensus 383 -~~i~iwd~~~ 392 (458)
..|.+.++..
T Consensus 391 ~~~L~~~~l~g 401 (419)
T PRK04043 391 QSALGIIRLNY 401 (419)
T ss_pred cEEEEEEecCC
Confidence 2355566543
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=8.4e-07 Score=80.96 Aligned_cols=228 Identities=13% Similarity=0.137 Sum_probs=153.0
Q ss_pred CCeEEEEeCCCc--eeeEEecCCCcccEEEEEeC--CCeEEEEeC---CCcEEEEEccCC-Cee--EEEEcccccceEeE
Q 012679 204 NCQVQLWDSTAN--RQLRTLRGGHRSRVGSLAWN--NHILTTGGM---DGLIINNDVRVR-DHI--VETYRGHNQEVCGL 273 (458)
Q Consensus 204 dg~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~---dg~i~vwd~~~~-~~~--~~~~~~h~~~v~~l 273 (458)
+.-|++|++.+. +.-......+....+-|+|+ ++.|.++.. +|.|..|.+... ..+ +........+-|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 356999988733 22211122366778888996 456777754 577888877653 221 11111223344889
Q ss_pred EEcCCCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeeeecccccc----------eeEEEecCCCCcEEEEeCCCCCCeE
Q 012679 274 KWSASGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHRLEEHTSA----------VKAIAWCPFQSNLLATGGGGGDRCI 342 (458)
Q Consensus 274 ~~spd~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~p~~~~ll~s~~g~~d~~i 342 (458)
+++++|++++++.. -|.|.++-++....... ......|.+. +....+.|++..++++.-| --.|
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~---~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG--~Dri 169 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQP---VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG--TDRI 169 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCcccc---ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC--CceE
Confidence 99999999988864 68899999876432111 2222234444 7888999998888887652 3479
Q ss_pred EEEECCCCCeeE----EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-eeeEEEeCC---------CCcEEE
Q 012679 343 KFWNTHTGACLN----SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-VKMAELSGH---------TSRVLF 408 (458)
Q Consensus 343 ~lwd~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-~~~~~~~~h---------~~~V~~ 408 (458)
.+|++..|.... .+..+.....+.|+|++++..+.+ --+++|.+|.+... ..+.+++.+ ....-.
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~-EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa 248 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN-ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA 248 (346)
T ss_pred EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe-ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence 999999876443 235567789999999999998875 36899999999873 333333322 245678
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEecCCCCc
Q 012679 409 MAQSPDGCTVASAAA-DETLRFWNVFGAPQ 437 (458)
Q Consensus 409 l~~spdg~~l~s~s~-Dg~i~iW~~~~~~~ 437 (458)
|.++|||++|.++.. ...|-+|.+.....
T Consensus 249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g 278 (346)
T COG2706 249 IHISPDGRFLYASNRGHDSIAVFSVDPDGG 278 (346)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence 899999999987653 34788888876543
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=4.9e-09 Score=99.54 Aligned_cols=263 Identities=17% Similarity=0.284 Sum_probs=171.8
Q ss_pred CCeEEEEcCCEEEEEECCC-----CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC---
Q 012679 152 SNVLAIALGSTVYLWDASD-----GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG--- 223 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~-----~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~--- 223 (458)
+.+++++.|.+|++|.+.. +.....+++..|..+|.++.|-.+.++++++ ||.|.+||.--++.+..+..
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk 825 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPK 825 (1034)
T ss_pred cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcc
Confidence 5689999999999999864 2223477888999999999999998888765 88899999888877765432
Q ss_pred -CCcccEEEEEe-CCCeEEEE-eCCCcEEEEEccCCCeeE--E--EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679 224 -GHRSRVGSLAW-NNHILTTG-GMDGLIINNDVRVRDHIV--E--TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 224 -~~~~~v~~l~~-~~~~l~sg-~~dg~i~vwd~~~~~~~~--~--~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~ 296 (458)
+....|.|+.- +..+++.| +...+|+++|.+..+..- + ...+...-+.+++..+.|+.++.+-..|.|.+.|.
T Consensus 826 ~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 826 EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEec
Confidence 12334555544 55666666 778999999998776421 1 12345667899999999999999999999999999
Q ss_pred CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEE-EECCCCCeeEEEeCCCCeEEEEEcCCCCeEE
Q 012679 297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF-WNTHTGACLNSVDTGSQVCALLWNKNERELL 375 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l-wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 375 (458)
+++.. +............++- |. ...++... .|.++.+ |....|......+.......+ ...-|..++
T Consensus 906 R~G~v------INswrpmecdllqlaa-ps-dq~L~~sa--ldHslaVnWhaldgimh~q~kpppepahf-lqsvgpSLV 974 (1034)
T KOG4190|consen 906 RNGKV------INSWRPMECDLLQLAA-PS-DQALAQSA--LDHSLAVNWHALDGIMHLQDKPPPEPAHF-LQSVGPSLV 974 (1034)
T ss_pred CCCce------eccCCcccchhhhhcC-ch-hHHHHhhc--ccceeEeeehhcCCeeeeccCCCCcchhh-hhccCceeE
Confidence 99876 4433333333444432 32 23333333 6888888 887777655544332211111 112234444
Q ss_pred EEecCCCCcEEEEeCC-C---ceeeEEEe--CCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 012679 376 SSHGFTQNQLTLWKYP-S---MVKMAELS--GHTSRVLFMAQSPDGCTVASAAADETLRF 429 (458)
Q Consensus 376 ~~~g~~d~~i~iwd~~-~---~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~i~i 429 (458)
++. ..+.+.+|.-. . ...+..++ ...+..++++.-|-..-++.|...|.|.+
T Consensus 975 ~a~--~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 975 TAQ--NGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Eec--cCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 432 33455555321 1 11111222 23456788888887777777888888875
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=1.5e-07 Score=82.02 Aligned_cols=221 Identities=11% Similarity=0.024 Sum_probs=146.3
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccE
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRV 229 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v 229 (458)
...++++|.-|...+|...+.+. .+.....|...|+-+.=.- ..-.+..++.|.++++.+++.+........ ..-.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-~~~~~ 161 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-QNLTQ 161 (344)
T ss_pred ccEEEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec-cccce
Confidence 35677777899999999987654 2333344444443332111 223466778888888888765544333322 11236
Q ss_pred EEEEe--CCCeEEEEeCCCcEEEEEccCCCee-EE-EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679 230 GSLAW--NNHILTTGGMDGLIINNDVRVRDHI-VE-TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT 305 (458)
Q Consensus 230 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~-~~-~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~ 305 (458)
.+++. ++.++++.+....|..|.+...... +. .....+..-.+..|+.....+|++..||++.|||++....+...
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 67777 5789999999999999998765432 23 22334445567889999999999999999999999987653222
Q ss_pred eeeeeecccccceeEEEecCCCCc--EEEEeCCCCCCeEEEEECCCCCeeEEEeC--------CCC-eEEEEEcCCCCeE
Q 012679 306 QWLHRLEEHTSAVKAIAWCPFQSN--LLATGGGGGDRCIKFWNTHTGACLNSVDT--------GSQ-VCALLWNKNEREL 374 (458)
Q Consensus 306 ~~~~~~~~h~~~v~~l~~~p~~~~--ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--------~~~-v~~~~~s~~~~~l 374 (458)
. ..+-..|.++++.+.|++.+.. |+.+- .-+.+.+.|++++...+.+.. ..+ +...+|+.++..+
T Consensus 242 ~-sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~ 317 (344)
T KOG4532|consen 242 I-SSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESN 317 (344)
T ss_pred h-cccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccc
Confidence 1 1233458999999999986543 34443 457899999999986665532 222 5666666666655
Q ss_pred EEE
Q 012679 375 LSS 377 (458)
Q Consensus 375 ~~~ 377 (458)
.+.
T Consensus 318 ~v~ 320 (344)
T KOG4532|consen 318 DVK 320 (344)
T ss_pred ccc
Confidence 553
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=9.7e-08 Score=94.43 Aligned_cols=244 Identities=16% Similarity=0.254 Sum_probs=174.4
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC--------------CeEEEEeCCCcEE
Q 012679 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--------------HILTTGGMDGLII 249 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~--------------~~l~sg~~dg~i~ 249 (458)
..-.++.|+|.| +||.|+.. .|.+.|..+-+.+..+.. |...|+.+.|.+ -+|+++...|.|.
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 336788999887 67777766 799999999999999998 999999999921 2678888999999
Q ss_pred EEEccCCCeeEEEEcccccceEeEEEcC---CC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679 250 NNDVRVRDHIVETYRGHNQEVCGLKWSA---SG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325 (458)
Q Consensus 250 vwd~~~~~~~~~~~~~h~~~v~~l~~sp---d~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 325 (458)
+||...... +..+..|..++..++|-+ +. ..|+.-.....|.+|+..+++. .-+.........|+.+.|
T Consensus 93 l~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k------~Wk~~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 93 LVDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK------FWKYDYSHEILSCFRVDP 165 (1062)
T ss_pred EEEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce------eeccccCCcceeeeeeCC
Confidence 999987654 556777888899999876 34 4566667778999999998876 445544556677789999
Q ss_pred CCCcEEEEeCCCCCCeEEEEECCC-------CCeeEEEeCC-------------C-------C------eEEEEEcCCCC
Q 012679 326 FQSNLLATGGGGGDRCIKFWNTHT-------GACLNSVDTG-------------S-------Q------VCALLWNKNER 372 (458)
Q Consensus 326 ~~~~ll~s~~g~~d~~i~lwd~~~-------~~~~~~~~~~-------------~-------~------v~~~~~s~~~~ 372 (458)
....-+..-+ ..|.+.+-+.-. |+.++.-... . . .-.++|+|.-+
T Consensus 166 fd~rh~~~l~--s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r 243 (1062)
T KOG1912|consen 166 FDSRHFCVLG--SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR 243 (1062)
T ss_pred CCcceEEEEc--cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh
Confidence 7665554443 556665554321 1111111000 0 0 12356788776
Q ss_pred eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC--CEEEEEeCCCcEEEEecCCCCccccc
Q 012679 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG--CTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg--~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
.++... -...+.|+|++-...+....-..+.+.-+.+-|++ ..|...-.||.+.||--.......++
T Consensus 244 n~lfi~--~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~ 312 (1062)
T KOG1912|consen 244 NILFIT--FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK 312 (1062)
T ss_pred ceEEEE--eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence 665543 46789999999888888776666666677777765 47888999999999987765555544
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.5e-09 Score=102.89 Aligned_cols=248 Identities=13% Similarity=0.168 Sum_probs=157.8
Q ss_pred eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC-------ceeeEEecCCCcccEEEEEeCCCeEEEEeCCC
Q 012679 174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-------NRQLRTLRGGHRSRVGSLAWNNHILTTGGMDG 246 (458)
Q Consensus 174 ~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-------~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg 246 (458)
..++.+.+|+..|..++--.+.+-+++++.|.+|++|.++. ..+..++.. |..+|.++.|-...-..++.||
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~ScD~ 804 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIASCDG 804 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeeeccC
Confidence 45677889999999998777788899999999999998753 235556666 9999999999544434456689
Q ss_pred cEEEEEccCCCeeEEEEc-ccccceEeEEEcC--CCCEEE-EEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEE
Q 012679 247 LIINNDVRVRDHIVETYR-GHNQEVCGLKWSA--SGQQLA-SGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA 322 (458)
Q Consensus 247 ~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~sp--d~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~ 322 (458)
.|.+||.-.+..+.+... ...+.+..+..-+ +...+. .++...+|+++|.+........+ +-.-.+..+.+++++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k-Vcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK-VCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEE-eccCCCCchheeEEE
Confidence 999999865543221111 1112233333333 333443 44778999999998876522211 111234557789999
Q ss_pred ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEE-EeCCCceeeEEEe
Q 012679 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTL-WKYPSMVKMAELS 400 (458)
Q Consensus 323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~i-wd~~~~~~~~~~~ 400 (458)
..+.|+.+.+.- ..|+|.+.|.++|+.+..+..- .....+ -.|..+.++.+ ..|..+.+ |..-++....+.+
T Consensus 884 Va~~GN~lAa~L---SnGci~~LDaR~G~vINswrpmecdllql-aapsdq~L~~s--aldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 884 VADKGNKLAAAL---SNGCIAILDARNGKVINSWRPMECDLLQL-AAPSDQALAQS--ALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred eccCcchhhHHh---cCCcEEEEecCCCceeccCCcccchhhhh-cCchhHHHHhh--cccceeEeeehhcCCeeeeccC
Confidence 999777666543 6899999999999988766431 111111 12444455542 25777887 8776666555554
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 401 GHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 401 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
....+...+. .-|..|+++.....+.+|.
T Consensus 958 pppepahflq--svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 958 PPPEPAHFLQ--SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CCCcchhhhh--ccCceeEEeccCcEEEEEe
Confidence 3333322211 1355677776666677774
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=1.6e-06 Score=85.22 Aligned_cols=214 Identities=12% Similarity=0.022 Sum_probs=133.0
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEe--CCC-eEEEEeC---CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNH-ILTTGGM---DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~-~l~sg~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~ 279 (458)
.|.+-|..... .+.+.. . .......| +++ .++..+. ...|+++|+.+++. ..+....+......|+|||
T Consensus 170 ~l~~~d~dg~~-~~~~~~-~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVK-G-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred eEEEECCCCCc-eeEEcc-C-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 55665654443 333443 2 26677788 455 3554333 35799999987654 2333345556678899999
Q ss_pred CEEEEEE-C--CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE
Q 012679 280 QQLASGG-N--DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV 356 (458)
Q Consensus 280 ~~l~sg~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~ 356 (458)
+.|+... . +..|.++|+..+.. ..+..+........|+|++..++++........|.+.|+.+++..+..
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~-------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTL-------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcE-------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 8776543 2 34688888766542 334444433445689999998888865222337888999888764443
Q ss_pred eCCCCeEEEEEcCCCCeEEEEecCCC-------CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-C--c
Q 012679 357 DTGSQVCALLWNKNERELLSSHGFTQ-------NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD-E--T 426 (458)
Q Consensus 357 ~~~~~v~~~~~s~~~~~l~~~~g~~d-------~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-g--~ 426 (458)
..+.. ...|+|+|+.++.+....+ ..|.+.|+.++.. ..+... .......|+|||+.|+..+.+ + .
T Consensus 318 ~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 318 FHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred cCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEE
Confidence 32222 3489999999988764321 3688888887754 334332 223358899999988766643 3 3
Q ss_pred EEEEecCCC
Q 012679 427 LRFWNVFGA 435 (458)
Q Consensus 427 i~iW~~~~~ 435 (458)
|.+.++.+.
T Consensus 394 L~~~~l~g~ 402 (419)
T PRK04043 394 LGIIRLNYN 402 (419)
T ss_pred EEEEecCCC
Confidence 556666553
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.98 E-value=6.3e-07 Score=84.16 Aligned_cols=147 Identities=11% Similarity=0.157 Sum_probs=114.3
Q ss_pred eeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC-eEEEEeCCCceeeEEecCCC
Q 012679 147 LDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC-QVQLWDSTANRQLRTLRGGH 225 (458)
Q Consensus 147 ~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg-~v~iwd~~~~~~~~~~~~~~ 225 (458)
++..++..++.-+.|...|.+...+-. ..+ +|.+.|.-..+.-+++-++.|..|| .+-|+|..+++..+... .
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~---iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~ 400 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGYS---IQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--D 400 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCee---EEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--C
Confidence 344456777777778888888766654 233 4566799999988888999999999 89999999887655444 5
Q ss_pred cccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC----cEEEEeCCCC
Q 012679 226 RSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN----LLHIWDRSMA 299 (458)
Q Consensus 226 ~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg----~i~iwd~~~~ 299 (458)
-+.|.++.. +|+.++.+.....|.+.|+.++.. ...-+...+-|+.+.|||+++++|-+--+| .|+++|+..+
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 677888877 578999999999999999998874 233345567899999999999999876655 6889998775
Q ss_pred C
Q 012679 300 S 300 (458)
Q Consensus 300 ~ 300 (458)
+
T Consensus 480 K 480 (668)
T COG4946 480 K 480 (668)
T ss_pred e
Confidence 4
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.98 E-value=4.6e-07 Score=88.99 Aligned_cols=258 Identities=14% Similarity=0.034 Sum_probs=156.1
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEE-EEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCccc-
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTS-VNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR- 228 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~-v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~- 228 (458)
.+.+++++.++.++.+|.++|+. +.+.... +.+.+ ... .+..+++++.+|.|..+|.++|+.+..........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~--~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEV--AWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCC--cccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 46778888899999999999987 4443322 22221 111 34567788889999999999999988876421100
Q ss_pred ---EEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc---c---ceEeEEEcC--CCCEEEEEECCCcEEEEeCC
Q 012679 229 ---VGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN---Q---EVCGLKWSA--SGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 229 ---v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~---~---~v~~l~~sp--d~~~l~sg~~dg~i~iwd~~ 297 (458)
..+-...+..++.++.+|.+..+|..+++.....-.... . ....+.-+| .+..++.++.+|.+..+|..
T Consensus 195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 011112234677788899999999887764222110000 0 001111222 35567777889999999998
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-C-CCeEEEEEcCCCCeEE
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-G-SQVCALLWNKNERELL 375 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~-~~v~~~~~s~~~~~l~ 375 (458)
+++. .+...+. ....+.. .+..+++.. .++.+..+|..+|+.+..... . ....+... .+..++
T Consensus 275 tG~~----~W~~~~~----~~~~~~~--~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~ 339 (394)
T PRK11138 275 SGQI----VWKREYG----SVNDFAV--DGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLV 339 (394)
T ss_pred CCCE----EEeecCC----CccCcEE--ECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEE
Confidence 8764 1112111 1112222 234555543 789999999999988765432 1 11222222 245555
Q ss_pred EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEE-EEEcCCCCEEEEEeCCCcEEEEec
Q 012679 376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLF-MAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~-l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
+ +..+|.|.++|..+++.+...+-....+.. ..+ .+..|+.++.||.|..++.
T Consensus 340 v--~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 340 V--GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred E--EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 5 457899999999999988877643333322 122 2447888899999988764
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=3.7e-06 Score=76.92 Aligned_cols=216 Identities=13% Similarity=0.141 Sum_probs=142.5
Q ss_pred EEEEcC-CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCee-EEEE
Q 012679 188 SVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHI-VETY 263 (458)
Q Consensus 188 ~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~-~~~~ 263 (458)
++.|.+ ++.++++-...+.|..|+..+++... +.. .. ...+.+ .+..|+.+...+. .++|+.++... +...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~-~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--PG-PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES--SS-EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec--CC-CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeec
Confidence 578888 67777777778999999998876543 332 12 444444 3566666666554 55588776421 1122
Q ss_pred c--c-cccceEeEEEcCCCCEEEEEECC--------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679 264 R--G-HNQEVCGLKWSASGQQLASGGND--------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332 (458)
Q Consensus 264 ~--~-h~~~v~~l~~spd~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~ 332 (458)
. . .....+.+++.++|++.++.... |.|..++.. ++ +..+...-.....|+|+|++..|++
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-------~~~~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-------VTVVADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-------EEEEEEEESSEEEEEEETTSSEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-------EEEEecCcccccceEECCcchheee
Confidence 1 1 34568899999999987776654 557777766 32 2222233455689999999888888
Q ss_pred EeCCCCCCeEEEEECCCCCe-e---EEE-e--CC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC
Q 012679 333 TGGGGGDRCIKFWNTHTGAC-L---NSV-D--TG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS 404 (458)
Q Consensus 333 s~~g~~d~~i~lwd~~~~~~-~---~~~-~--~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~ 404 (458)
+-+ ..+.|..+++..... + ..+ . .. .....+++..+|+..++. ...+.|.+++.. ++.+..+.-...
T Consensus 151 ~ds--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~--~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 151 ADS--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD--WGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EET--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE--ETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred ccc--ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE--cCCCEEEEECCC-ccEEEEEcCCCC
Confidence 776 788899999864221 1 112 2 22 237889999999887774 468899999977 888888876666
Q ss_pred cEEEEEE-cCCCCEEEEE
Q 012679 405 RVLFMAQ-SPDGCTVASA 421 (458)
Q Consensus 405 ~V~~l~~-spdg~~l~s~ 421 (458)
.+++++| .++...|...
T Consensus 226 ~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 226 RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SEEEEEEESTTSSEEEEE
T ss_pred CEEEEEEECCCCCEEEEE
Confidence 8999999 4666655543
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.97 E-value=3.3e-07 Score=90.00 Aligned_cols=275 Identities=11% Similarity=0.040 Sum_probs=162.2
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEE-----EEEEcC--CCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVT-----SVNWAP--DGRHIAIGLNNCQVQLWDSTANRQLRTLRG 223 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~-----~v~~s~--~g~~la~g~~dg~v~iwd~~~~~~~~~~~~ 223 (458)
.+.+++.+.++.|+-+|.++|+..=...+......+. .+.-.| ++..+++++.+|.+..+|.++|+.+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 4677888888999999999998732222222111000 001111 456788888999999999999999887764
Q ss_pred CCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc-ceEeEEEcC--CCCEEEEEECCCcEEEEeCCCCC
Q 012679 224 GHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ-EVCGLKWSA--SGQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 224 ~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~l~~sp--d~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
......+....+..++.++.+|.+..+|..+++.....-..... .... .-+| .+..++.++.+|.+..+|..+++
T Consensus 149 -~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~~G~ 226 (394)
T PRK11138 149 -AGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSAVLMEQGQ 226 (394)
T ss_pred -CCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEEEEccCCh
Confidence 22212222234567778888999999999988754332211100 0000 0111 23456777888999999988776
Q ss_pred CCCcceeeeeecccc--c---ceeEEEecC--CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCe
Q 012679 301 SNSVTQWLHRLEEHT--S---AVKAIAWCP--FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERE 373 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~--~---~v~~l~~~p--~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~ 373 (458)
... ...+.... . ....+.-+| .+..+++.+ .++.+..+|..+|+.+......... .+. ..+..
T Consensus 227 ~~W----~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~-~~~--~~~~~ 296 (394)
T PRK11138 227 LIW----QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREYGSVN-DFA--VDGGR 296 (394)
T ss_pred hhh----eeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecCCCcc-CcE--EECCE
Confidence 521 11111000 0 000111111 234555543 6899999999999988766543321 121 23455
Q ss_pred EEEEecCCCCcEEEEeCCCceeeEEEeCCCCc-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR-VLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 374 l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
+++ +..++.+..+|..+++.+.....-... ...... .+..|+.++.||.|.+.|..+++...+.
T Consensus 297 vy~--~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 297 IYL--VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EEE--EcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 555 337899999999998876544321111 111122 2457788899999999999888776654
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=1.2e-06 Score=95.43 Aligned_cols=238 Identities=12% Similarity=0.130 Sum_probs=147.0
Q ss_pred eeccC--CCeEEE-EcCCEEEEEECCCCCeeeEEEecC--C------------CCCEEEEEEcCCCCEEEEEec-CCeEE
Q 012679 147 LDWGS--SNVLAI-ALGSTVYLWDASDGTTSELVTVDD--E------------NGPVTSVNWAPDGRHIAIGLN-NCQVQ 208 (458)
Q Consensus 147 ~~~~~--~~~la~-~~d~~v~iwd~~~~~~~~~~~~~~--h------------~~~V~~v~~s~~g~~la~g~~-dg~v~ 208 (458)
+.++. ++++.+ ..++.|++||... .. +..+.+ . -.....|++.++++.|+++.. ++.|+
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G-~~--i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDG-NF--IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCC-CE--EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 45543 333333 4567899999764 43 222221 1 123578999998887766654 56799
Q ss_pred EEeCCCceeeEEecCC-C---------------cccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcc----
Q 012679 209 LWDSTANRQLRTLRGG-H---------------RSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRG---- 265 (458)
Q Consensus 209 iwd~~~~~~~~~~~~~-~---------------~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~---- 265 (458)
++|..++. +.++.+. . -..-..++++ +.++++.+.++.|++||...+.. ..+.+
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGYE 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCcc
Confidence 99987765 3333210 0 0123456774 45667777889999999876542 22211
Q ss_pred -----------cccceEeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcc-------eeeeeeccc--------ccce
Q 012679 266 -----------HNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVT-------QWLHRLEEH--------TSAV 318 (458)
Q Consensus 266 -----------h~~~v~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~h--------~~~v 318 (458)
.-....+++++|+++.| ++-+.++.|++||+.++...... .....+..+ -...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 11235679999999855 55566799999998765421000 000011100 1123
Q ss_pred eEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--------------CCeEEEEEcCCCCeEEEEecCCCCc
Q 012679 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--------------SQVCALLWNKNERELLSSHGFTQNQ 384 (458)
Q Consensus 319 ~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~g~~d~~ 384 (458)
..+++++++. ++++.. .++.|++||..++........+ .....++++++|+.+++ ...++.
T Consensus 807 ~Gvavd~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa--Dt~Nn~ 881 (1057)
T PLN02919 807 LGVLCAKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA--DTNNSL 881 (1057)
T ss_pred ceeeEeCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE--ECCCCE
Confidence 5889999765 666655 7899999999888766443221 24678999999986665 457899
Q ss_pred EEEEeCCCcee
Q 012679 385 LTLWKYPSMVK 395 (458)
Q Consensus 385 i~iwd~~~~~~ 395 (458)
|++||+.+++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999988754
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.94 E-value=1.9e-08 Score=92.38 Aligned_cols=165 Identities=15% Similarity=0.230 Sum_probs=122.1
Q ss_pred eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
...+..+++++++|.+..+....++++..... ..+++..... ...-.++.+..+....+++-.......+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC--cceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 34456788899999999988888888766543 1122222221 22234455555555555543323667788888777
Q ss_pred CCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE-eCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 012679 350 GACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLR 428 (458)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~i~ 428 (458)
+.+...+.+-+.+..++|+||++.|++ ...|..|+|-.++....+..+ -||+.-|..++.-++ +.|++||.|++|+
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~Iit--aDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIIT--ADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR 218 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEE--ecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence 888888888889999999999999999 458999999999887776665 479999999998865 4689999999999
Q ss_pred EEecCCCCcccc
Q 012679 429 FWNVFGAPQVIS 440 (458)
Q Consensus 429 iW~~~~~~~~~~ 440 (458)
+||+.++.....
T Consensus 219 ~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 219 LWDITSGKLLDT 230 (390)
T ss_pred EEecccCCcccc
Confidence 999999887744
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=7.1e-10 Score=110.48 Aligned_cols=216 Identities=14% Similarity=0.205 Sum_probs=156.0
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeC-CC-cEEEE
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGM-DG-LIINN 251 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~-dg-~i~vw 251 (458)
...+..|+...+|++|+-+.++|++|+..|.|++|++.+|.......+ |.+.|+-+.. +|..+++.+. .. ...+|
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCchHHHh
Confidence 445667888999999999999999999999999999999999999988 9999999988 5665554443 33 56789
Q ss_pred EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee----cccccceeEEEecCCC
Q 012679 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL----EEHTSAVKAIAWCPFQ 327 (458)
Q Consensus 252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~p~~ 327 (458)
++.........+. +-.++.|+.....-+.|+......|||+.+... +.++ .+.+..-.+..|+|..
T Consensus 1173 ~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~------l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSP------LQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred ccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcH------HHHhcCcchhhhhhccccccCCCc
Confidence 9875433333332 345788887665556677667899999998765 3331 1223334678899964
Q ss_pred CcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEE
Q 012679 328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL 407 (458)
Q Consensus 328 ~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~ 407 (458)
. |+. .||. +||++..+.++.++.-..-..-.|+|+|..+++- -.|||+++.+.++....-. -.
T Consensus 1243 ~-LIl-----ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIIN-------SEIwD~RTF~lLh~VP~Ld--qc 1305 (1516)
T KOG1832|consen 1243 T-LIL-----NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIIN-------SEIWDMRTFKLLHSVPSLD--QC 1305 (1516)
T ss_pred c-eEe-----eCce--eeeeccHHHHhhhhhheecccccccCCCceEEee-------chhhhhHHHHHHhcCcccc--ce
Confidence 4 444 5664 7999998888877654444455799999999983 3689999988776654322 24
Q ss_pred EEEEcCCCCEEE
Q 012679 408 FMAQSPDGCTVA 419 (458)
Q Consensus 408 ~l~~spdg~~l~ 419 (458)
.+.|+..|..+.
T Consensus 1306 ~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMY 1317 (1516)
T ss_pred EEEeccCccchh
Confidence 566766666544
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.91 E-value=5e-08 Score=84.66 Aligned_cols=165 Identities=13% Similarity=0.259 Sum_probs=103.4
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee-EEecCCCcccE-EEEEeCCCeEEEEe-----CCCcEE
Q 012679 177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL-RTLRGGHRSRV-GSLAWNNHILTTGG-----MDGLII 249 (458)
Q Consensus 177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~v-~~l~~~~~~l~sg~-----~dg~i~ 249 (458)
..+..|.++-.+-+.+-.++.++++..||.+.+++.+.-..+ +.+...|.+.. .++.-.++.+.++. .-+..+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence 333334433333333445678999999999999987652111 11111111111 11112344444432 224556
Q ss_pred EEEccCCCeeEEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679 250 NNDVRVRDHIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS 328 (458)
Q Consensus 250 vwd~~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 328 (458)
.|+++.........+.- ..|.+++-+|. .+++++|+.||.+.+||.+....+ ...+..|..++..+-|+|..+
T Consensus 163 a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p-----~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP-----VSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred eeccccccccccccccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccch-----HHHHHHhhhhhhheeccCCCc
Confidence 77776444322222222 33999999995 456678889999999999987442 566789999999999999877
Q ss_pred cEEEEeCCCCCCeEEEEECCC
Q 012679 329 NLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 329 ~ll~s~~g~~d~~i~lwd~~~ 349 (458)
.-|.+++ .||.+--||..+
T Consensus 237 ~~Lft~s--edGslw~wdas~ 255 (319)
T KOG4714|consen 237 EHLFTCS--EDGSLWHWDAST 255 (319)
T ss_pred hheeEec--CCCcEEEEcCCC
Confidence 7777776 999999999765
No 296
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=8.1e-08 Score=88.25 Aligned_cols=258 Identities=14% Similarity=0.173 Sum_probs=163.0
Q ss_pred EEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCe
Q 012679 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHI 238 (458)
Q Consensus 163 v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~ 238 (458)
|++.+-.+-+. ..-+..|...|..++|||..+ ++..++.+..|+|.|+++...+..+.. + ..+++++|+ .++
T Consensus 175 v~~l~~~~fks--sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKS--SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-Y-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcch--hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-c-CCceeeeeccCCcce
Confidence 55555444333 335667888999999999776 788899999999999999999888885 4 889999994 589
Q ss_pred EEEEeCCCcEEEEEccCCCeeEEEEcc--cccceEeEEE------cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee
Q 012679 239 LTTGGMDGLIINNDVRVRDHIVETYRG--HNQEVCGLKW------SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR 310 (458)
Q Consensus 239 l~sg~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~l~~------spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 310 (458)
|..|...|.|.+||++.....+..+.+ ...+|..++. .+.|.+|+....+ +..|++........ ++..
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p--~vle 326 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP--CVLE 326 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC--cccc
Confidence 999999999999999977654433332 2334444443 2345555555543 56677654432111 1122
Q ss_pred ecccccceeEEEecCCCCcEEEEeCCCCCC---eEE----EEECCCCCeeEEEeC---CCC-----eEEEEEcCCCCeEE
Q 012679 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDR---CIK----FWNTHTGACLNSVDT---GSQ-----VCALLWNKNERELL 375 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~---~i~----lwd~~~~~~~~~~~~---~~~-----v~~~~~s~~~~~l~ 375 (458)
+ +..+...+++.++..+.++++.- .+. .++ --|..+|..+..... ++. -....+.+..+.++
T Consensus 327 l-e~pG~cismqy~~~snh~l~tyR--s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~i 403 (463)
T KOG1645|consen 327 L-EPPGICISMQYHGVSNHLLLTYR--SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYI 403 (463)
T ss_pred c-CCCcceeeeeecCccceEEEEec--CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEE
Confidence 2 33566778888887788888763 211 111 122333433322211 111 11222333333444
Q ss_pred EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-CCC-EEEEEeCCCcEEEEecC
Q 012679 376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGC-TVASAAADETLRFWNVF 433 (458)
Q Consensus 376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~-~l~s~s~Dg~i~iW~~~ 433 (458)
+..|.+.+.+.+||..+++.+.++.- ..+|..++... +|. +|+ .-.|..++||...
T Consensus 404 v~~gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa-~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 404 VVVGDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLA-LLTDDRVHIYKNE 461 (463)
T ss_pred EEecCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhh-heecceEEEEecC
Confidence 44477889999999999999998863 47787777654 343 555 4456688888754
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.90 E-value=1.2e-06 Score=79.70 Aligned_cols=221 Identities=14% Similarity=0.107 Sum_probs=139.0
Q ss_pred CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeE
Q 012679 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHIL 239 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l 239 (458)
+|.|..||..+|+..-...+........+. ..+++.++++++.++.|..||..+|+.+..+......... ....+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeeccccc
Confidence 689999999999873333332112222221 2335677888899999999999999998887742221111 34467777
Q ss_pred EEEeCCCcEEEEEccCCCeeEEEEcccc---cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc
Q 012679 240 TTGGMDGLIINNDVRVRDHIVETYRGHN---QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS 316 (458)
Q Consensus 240 ~sg~~dg~i~vwd~~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~ 316 (458)
+.++.++.|..+|..++........... ..........++..++.+..++.|..+|..+++. +........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~------~w~~~~~~~ 153 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL------LWKYPVGEP 153 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE------EEEEESSTT
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE------EEEeecCCC
Confidence 7787888999999988886544222211 1112222333488889999899999999998876 333322221
Q ss_pred c----------e-eEEEecCCCCcEEEEeCCCCCCe-EEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCc
Q 012679 317 A----------V-KAIAWCPFQSNLLATGGGGGDRC-IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384 (458)
Q Consensus 317 ~----------v-~~l~~~p~~~~ll~s~~g~~d~~-i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~ 384 (458)
. + ..+.+. +..++++. .++. +.+ |+.+++.+.... ......+ ....+..+++.. .++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~--~~~v~~~~---~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~--~~~~ 223 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVIS--DGRVYVSS---GDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTS--SDGR 223 (238)
T ss_dssp -SS--EEEETTEEEEEECC--TTEEEEEC---CTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEE--TTTE
T ss_pred CCCcceeeecccccceEEE--CCEEEEEc---CCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEe--CCCE
Confidence 1 1 223333 23555554 4664 555 999999775443 3333332 456777777753 7899
Q ss_pred EEEEeCCCceeeEE
Q 012679 385 LTLWKYPSMVKMAE 398 (458)
Q Consensus 385 i~iwd~~~~~~~~~ 398 (458)
|..||..+++.+.+
T Consensus 224 l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 224 LYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEECCCCCEEeE
Confidence 99999999987653
No 298
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.85 E-value=1.4e-06 Score=90.60 Aligned_cols=237 Identities=16% Similarity=0.275 Sum_probs=139.2
Q ss_pred ccceeecc--CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWG--SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~--~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.+..+.+- .+.++.+..+|.|.+-|.++......-.+ .+.|.+++|+||++.++..+..+++.+-+ .+...+..
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E 145 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAE 145 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhc
Confidence 34555553 36688888889998889888776544444 56799999999999999999888776643 22222111
Q ss_pred ec----CCCcccEEEEEeCC-CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE-----ECCCc
Q 012679 221 LR----GGHRSRVGSLAWNN-HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG-----GNDNL 290 (458)
Q Consensus 221 ~~----~~~~~~v~~l~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg-----~~dg~ 290 (458)
.. ....+....+-|.. ..-+-|+. |.....+.............+. .=+.+.|--||.++|+. .....
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred cccccccccccccceecccccceeeecch-hhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEEEeccCCcee
Confidence 11 01223344455532 11222221 2221211111111111111222 23468999999999983 23379
Q ss_pred EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE----eCCC-CeEEE
Q 012679 291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV----DTGS-QVCAL 365 (458)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~----~~~~-~v~~~ 365 (458)
|+|||-+ +....... ...+--.+++|-|.|..+.+...-+.|+.|.++.-+ |-.-..+ .... .+..+
T Consensus 224 irV~drE-g~Lns~se------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSE------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred EEEeccc-chhhcccC------cccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchhee
Confidence 9999977 33311111 122333579999976666666555567789999743 3322222 2222 38999
Q ss_pred EEcCCCCeEEEEecCCCCc-EEEEeCCCc
Q 012679 366 LWNKNERELLSSHGFTQNQ-LTLWKYPSM 393 (458)
Q Consensus 366 ~~s~~~~~l~~~~g~~d~~-i~iwd~~~~ 393 (458)
+|+.++..|++......+. |++|-..+.
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCe
Confidence 9999999998854444554 999988764
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.82 E-value=4.1e-06 Score=76.11 Aligned_cols=216 Identities=13% Similarity=0.079 Sum_probs=135.4
Q ss_pred cCCeEEEEeCCCceeeEEecCCC-cccEEE-EEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679 203 NNCQVQLWDSTANRQLRTLRGGH-RSRVGS-LAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280 (458)
Q Consensus 203 ~dg~v~iwd~~~~~~~~~~~~~~-~~~v~~-l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~ 280 (458)
.+|.|..||..+++.+....... .....+ ...++..+++++.++.|..||..+++.....-. ...+.... ..++.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAP-VVDGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGE-EEETT
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--ccccccee-eeccc
Confidence 36899999999999998886422 222232 233677888889999999999988875333222 22211111 22456
Q ss_pred EEEEEECCCcEEEEeCCCCCCCCcceeeeee-ccc----c-cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE
Q 012679 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEH----T-SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN 354 (458)
Q Consensus 281 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h----~-~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~ 354 (458)
.++.++.++.|+.+|..+++. +... ... . .......+. +..+++.. .++.|..+|..+|+.+.
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~------~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKV------LWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGT---SSGKLVALDPKTGKLLW 146 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCE------EEEEEE-SSCTCSTB--SEEEEE--TTEEEEEE---TCSEEEEEETTTTEEEE
T ss_pred ccccccceeeeEecccCCcce------eeeeccccccccccccccCceEe--cCEEEEEe---ccCcEEEEecCCCcEEE
Confidence 677777888999999888876 3331 111 1 111222222 45555544 58999999999999988
Q ss_pred EEeCCCCe-----------EEEEEcCCCCeEEEEecCCCCc-EEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679 355 SVDTGSQV-----------CALLWNKNERELLSSHGFTQNQ-LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 355 ~~~~~~~v-----------~~~~~s~~~~~l~~~~g~~d~~-i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 422 (458)
.......- ..-....++ .++++. .++. +.+ |..+++.+.+.. ...+.. ....++..|+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~--~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS--GDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTS 219 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC--CTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEE
T ss_pred EeecCCCCCCcceeeecccccceEEECC-EEEEEc--CCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEe
Confidence 88653311 122222344 555543 4554 555 999999775443 222332 1345777888888
Q ss_pred CCCcEEEEecCCCCccc
Q 012679 423 ADETLRFWNVFGAPQVI 439 (458)
Q Consensus 423 ~Dg~i~iW~~~~~~~~~ 439 (458)
.++.|..||+.+++...
T Consensus 220 ~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTTEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCCEEe
Confidence 99999999999887654
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=7.3e-08 Score=94.75 Aligned_cols=198 Identities=20% Similarity=0.301 Sum_probs=139.8
Q ss_pred CCCeEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCC--CEEEEEECCCcEEEEeCCCCCCCCcceeeeee
Q 012679 235 NNHILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASG--QQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311 (458)
Q Consensus 235 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 311 (458)
.|.-++.+++-|. .+.|+.........+. ...-.|....|+|.. .+-++......-.+|++........ ...+
T Consensus 35 ~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI---ef~l 110 (1081)
T KOG0309|consen 35 SGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI---EFVL 110 (1081)
T ss_pred ccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccce---EEEE
Confidence 4666777777764 4556554433222221 123357778888743 3444444555667899876655322 4456
Q ss_pred cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679 312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 312 ~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd 389 (458)
.+|..+|+.+.|+|..+.++++++ .|..+..||+++.. ++.... -......+.|+.....+++.. ..+.|.+||
T Consensus 111 hghsraitd~n~~~q~pdVlatcs--vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass--hg~~i~vwd 186 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCS--VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS--HGNDIFVWD 186 (1081)
T ss_pred ecCccceeccccCCCCCcceeecc--ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc--cCCceEEEe
Confidence 789999999999999999999998 99999999999854 444443 355677888987665555522 457899999
Q ss_pred CCCc-eeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 390 YPSM-VKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 390 ~~~~-~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
.+.+ .++..+++|...|..++|.. .-..+.+.+.||+|++||........+
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~ 239 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK 239 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence 9864 67889999999999999976 234578899999999999876654443
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.78 E-value=2.8e-08 Score=62.23 Aligned_cols=39 Identities=36% Similarity=0.572 Sum_probs=36.9
Q ss_pred ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 393 MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 393 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.77 E-value=3.2e-05 Score=70.74 Aligned_cols=218 Identities=13% Similarity=0.189 Sum_probs=137.9
Q ss_pred eeccC--CCeEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEc-CCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679 147 LDWGS--SNVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWA-PDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 147 ~~~~~--~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s-~~g~~la~g~~dg~v~iwd~~~~~~~~~~~ 222 (458)
..|.+ +.++.+. ..+.|+.|+..+++.. ...+.+ ...+++. ++| .|+++...+ +.++|..+++......
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~----~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG----PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS----EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC----CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee
Confidence 45654 5566665 4789999999887642 233322 6777777 565 555565554 5666998886544333
Q ss_pred C---C-CcccEEEEEeC--CCeEEEEeCC--------CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE-EEEC
Q 012679 223 G---G-HRSRVGSLAWN--NHILTTGGMD--------GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA-SGGN 287 (458)
Q Consensus 223 ~---~-~~~~v~~l~~~--~~~l~sg~~d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-sg~~ 287 (458)
. . .....+.++++ |++.++.... |.|..++.. +. +......-...++|+|+|+++.|+ +-+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeecccc
Confidence 2 1 44677888884 6666655433 457777766 22 233333345678999999999775 5567
Q ss_pred CCcEEEEeCCCCCC-CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEE
Q 012679 288 DNLLHIWDRSMASS-NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCAL 365 (458)
Q Consensus 288 dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~ 365 (458)
.+.|..+++..... .........+....+..-.+++..++. +.++.. ..+.|.++|.. |+.+..+... ..++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 88899999865433 111111222333333477899999765 444433 57899999987 9999888776 789999
Q ss_pred EE-cCCCCeEEEEe
Q 012679 366 LW-NKNERELLSSH 378 (458)
Q Consensus 366 ~~-s~~~~~l~~~~ 378 (458)
+| -++.+.|++++
T Consensus 231 ~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 231 AFGGPDGKTLYVTT 244 (246)
T ss_dssp EEESTTSSEEEEEE
T ss_pred EEECCCCCEEEEEe
Confidence 99 46777777764
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.76 E-value=2.9e-07 Score=92.77 Aligned_cols=181 Identities=20% Similarity=0.290 Sum_probs=140.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeE
Q 012679 194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL 273 (458)
Q Consensus 194 ~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l 273 (458)
++..++.|+-...+..+|+.+.+..+.... ....|.-+..++..+.+|...|+|.+-|.++.+. +.++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~-iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFET-IHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEecCcEEEeecccceEEeecCCcCce-eeeeeccccceeee
Confidence 455677787777899999999988887775 4556889999999999999999999999987664 78999999999876
Q ss_pred EEcCCCCEEEEEEC---------CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEE
Q 012679 274 KWSASGQQLASGGN---------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF 344 (458)
Q Consensus 274 ~~spd~~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l 344 (458)
.. .|+.|+++|. |.-|+|||+++.+. +..+.-+.++ .-+.|+|.-...+++++ ..|...+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra------l~PI~~~~~P-~flrf~Psl~t~~~V~S--~sGq~q~ 292 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA------LSPIQFPYGP-QFLRFHPSLTTRLAVTS--QSGQFQF 292 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhc------cCCcccccCc-hhhhhcccccceEEEEe--cccceee
Confidence 54 6899999884 55689999998876 3333333333 45778887666677666 7888999
Q ss_pred EECCC---C-CeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679 345 WNTHT---G-ACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 345 wd~~~---~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd 389 (458)
-|..+ . .-+..+ ..++.+..+++++++..++. |..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alaf--gd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAF--GDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEE--ecccCcEeeec
Confidence 88433 2 122333 34566999999999999999 77999999997
No 304
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.75 E-value=2e-07 Score=82.90 Aligned_cols=210 Identities=16% Similarity=0.265 Sum_probs=139.6
Q ss_pred CcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCee----EEEEcccc------------cceEeEEEcCCC--CEEEE
Q 012679 225 HRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHI----VETYRGHN------------QEVCGLKWSASG--QQLAS 284 (458)
Q Consensus 225 ~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~----~~~~~~h~------------~~v~~l~~spd~--~~l~s 284 (458)
....|+++.|+ |.+|++|...|.|.+|.-.....+ ...+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45678899995 789999999999999976543321 22344554 347788887654 36777
Q ss_pred EECCCcEEEEeCCCCCCCCc------------------------------------ceeeeee-cccccceeEEEecCCC
Q 012679 285 GGNDNLLHIWDRSMASSNSV------------------------------------TQWLHRL-EEHTSAVKAIAWCPFQ 327 (458)
Q Consensus 285 g~~dg~i~iwd~~~~~~~~~------------------------------------~~~~~~~-~~h~~~v~~l~~~p~~ 327 (458)
.++|.+|++|.+........ ..+.... ..|..-+.++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 88999999998765421000 0001111 4577788999999987
Q ss_pred CcEEEEeCCCCCCeEEEEECCCCC-eeEEEeC--C------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce----
Q 012679 328 SNLLATGGGGGDRCIKFWNTHTGA-CLNSVDT--G------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV---- 394 (458)
Q Consensus 328 ~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~~--~------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~---- 394 (458)
..++.+ .|=.|.+|++.--. +...++. + .-|++..|+|....++.- ..+.|.|++-|++...
T Consensus 185 et~lSa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY-SsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 185 ETLLSA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY-SSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred heeeec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE-ecCCCcEEehhhhhhhhccC
Confidence 666653 68899999987533 2222222 1 237888999976655543 3378999999987321
Q ss_pred --eeEE----------EeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 395 --KMAE----------LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 395 --~~~~----------~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
.+.+ +.+-...|..+.|+++|+++++-+. -+|+|||+.......+
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 1111 1122356888999999999986544 5899999987665444
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.3e-07 Score=86.47 Aligned_cols=240 Identities=13% Similarity=0.114 Sum_probs=166.6
Q ss_pred CCeEEEEcCCEEEEEECCC-CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec-CCeEEEEeCCCceeeEEecCCCcccE
Q 012679 152 SNVLAIALGSTVYLWDASD-GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN-NCQVQLWDSTANRQLRTLRGGHRSRV 229 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~-~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v 229 (458)
+.++.++.||.++.|--.. .-.+-+..+..|...|.+++.+-+|..++++.. |..++++|+++-..+.-+.. ...-
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL--~~lP 98 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL--VDLP 98 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc--ccCC
Confidence 6689999999999997554 222334556678888999999999999999777 99999999987665543331 1112
Q ss_pred EEEEe---CC----CeEEEEeCCCcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC-C
Q 012679 230 GSLAW---NN----HILTTGGMDGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA-S 300 (458)
Q Consensus 230 ~~l~~---~~----~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~-~ 300 (458)
..+.| .| .+-++.-.+|.|.++|-....+.. ..-.-|..+|..+.+++-+..+++....|.|.-|..... +
T Consensus 99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 23334 23 233344567899999987665333 334469999999999999999999999999999997731 1
Q ss_pred CCC--------cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--------------
Q 012679 301 SNS--------VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-------------- 358 (458)
Q Consensus 301 ~~~--------~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-------------- 358 (458)
.+. ....+..+........++.|+|++..+-..+ .|..|++++.++|+.++.++.
T Consensus 179 fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~ 255 (558)
T KOG0882|consen 179 FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG 255 (558)
T ss_pred CccccccccccccchhhcccccccCccceEEccccCcccccC---cccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence 100 0011222333456678999999876665544 899999999999987665531
Q ss_pred --------------------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679 359 --------------------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL 399 (458)
Q Consensus 359 --------------------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~ 399 (458)
...-+.++|...+++|+-.+ -=-|++.++.+.+.+..+
T Consensus 256 l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t---~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 256 LMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT---ILGIKVINLDTNTVVRIL 313 (558)
T ss_pred cceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec---ceeEEEEEeecCeEEEEe
Confidence 01235678888999988732 234788888877766554
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.69 E-value=6.3e-07 Score=90.42 Aligned_cols=185 Identities=15% Similarity=0.216 Sum_probs=134.7
Q ss_pred CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc
Q 012679 235 NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH 314 (458)
Q Consensus 235 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h 314 (458)
++..++.|+....+..+|+++... .+...-..+.|.-+. .+++++.+|...|+|.+-|.++.+. ++++..|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e-~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~------iht~~aH 216 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKE-TRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFET------IHTFDAH 216 (1118)
T ss_pred CCcceeecchhhheeeeeccccee-eeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCce------eeeeecc
Confidence 567888888888899999987653 233322233354444 4789999999999999999998877 8999999
Q ss_pred ccceeEEEecCCCCcEEEEeCC-------CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEE
Q 012679 315 TSAVKAIAWCPFQSNLLATGGG-------GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTL 387 (458)
Q Consensus 315 ~~~v~~l~~~p~~~~ll~s~~g-------~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~i 387 (458)
++.|..+... +++|+++|- ..|..|++||++..+.+.-+.......-+.|.|.-...++.+ +..|+..+
T Consensus 217 s~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~-S~sGq~q~ 292 (1118)
T KOG1275|consen 217 SGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVT-SQSGQFQF 292 (1118)
T ss_pred ccceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEE-ecccceee
Confidence 9999887753 455555542 247789999999988877776665556677888765444332 25788888
Q ss_pred EeCCCc----eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679 388 WKYPSM----VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432 (458)
Q Consensus 388 wd~~~~----~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~ 432 (458)
-|..+. ..+..+..-...+..+++|++|+.++.|..+|.|.+|.-
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 884321 112222333455999999999999999999999999983
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.69 E-value=4e-07 Score=79.18 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=99.5
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-----cCCeEEEEeCCCceeeEEecCCC
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-----NNCQVQLWDSTANRQLRTLRGGH 225 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-----~dg~v~iwd~~~~~~~~~~~~~~ 225 (458)
.+.++++..||.+.+.+.+. ......++......-.+.+....++.+.++. .-+..++|++...+.+..-.. .
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~ 178 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-A 178 (319)
T ss_pred CCceEecCCCceEEEEechH-HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-c
Confidence 47889999999999998765 1111111111111122233333455554432 123566776654443332222 2
Q ss_pred cccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 012679 226 RSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 226 ~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~ 298 (458)
...|.+++-+ .+++++|+.||.+.+||.+....++..+..|..++..+.|+| ++..|+++++||.+--||..+
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3348888876 478999999999999999988777788899999999999999 678999999999999999764
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=2.2e-08 Score=100.16 Aligned_cols=251 Identities=14% Similarity=0.239 Sum_probs=168.6
Q ss_pred ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC--eEEEEeCCC-cee
Q 012679 143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC--QVQLWDSTA-NRQ 217 (458)
Q Consensus 143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg--~v~iwd~~~-~~~ 217 (458)
.++|++++. +.++.|...|.|++|++.+|.. ......|..+|+.+.-+.||..+++.+... ...+|++.. +..
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~ 1180 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGP 1180 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCccc--cccccccccccccccccCCcceeeeeccccCchHHHhccccccCc
Confidence 456677765 5678888899999999999987 566778999999999999999877665433 578999754 344
Q ss_pred eEEecCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEc---ccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 218 LRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYR---GHNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 218 ~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
.+++.. -.++.|.+ ..-+.|+......+||+++...+..-+. +....-++..|+|+..+++ +|| .
T Consensus 1181 ~Hsf~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--v 1250 (1516)
T KOG1832|consen 1181 RHSFDE-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--V 1250 (1516)
T ss_pred cccccc-----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--e
Confidence 444443 45677743 2334455556788999998875433232 2333447789999998876 455 5
Q ss_pred EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCC
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER 372 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~ 372 (458)
+||.+.... ++.|...+.. ..-.|+|.+..+++- -.|||++|.+.++.+..- .-|.+.|+..|.
T Consensus 1251 LWDvR~~~a------Ih~FD~ft~~-~~G~FHP~g~eVIIN--------SEIwD~RTF~lLh~VP~L-dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1251 LWDVRIPEA------IHRFDQFTDY-GGGGFHPSGNEVIIN--------SEIWDMRTFKLLHSVPSL-DQCAVTFNSTGD 1314 (1516)
T ss_pred eeeeccHHH------Hhhhhhheec-ccccccCCCceEEee--------chhhhhHHHHHHhcCccc-cceEEEeccCcc
Confidence 799998765 6666554422 234699988777763 248999999888776432 246788888888
Q ss_pred eEEEEecCCC---------------CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679 373 ELLSSHGFTQ---------------NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 373 ~l~~~~g~~d---------------~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 422 (458)
.++++-.-.| ...+-|+......+.++.+ ...|..++-+|...+|+.--
T Consensus 1315 VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1315 VMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred chhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEEEe
Confidence 7765321000 1233444455556666653 34566777788777776553
No 309
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.67 E-value=1.6e-05 Score=80.15 Aligned_cols=278 Identities=13% Similarity=0.137 Sum_probs=163.5
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC------CEE--EEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENG------PVT--SVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~------~V~--~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~ 222 (458)
.+.+++++.++.|+-.|..+|+. +.+...... .+. .+... ++..+++++.+|.|.-+|.++++.+..+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKV--LWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChh--hceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 35677777889999999999986 333322111 010 01111 22678889999999999999999998876
Q ss_pred CCCcc----cE-EEEEeCCCeEEEEe---------CCCcEEEEEccCCCeeEEEEccccc-------------------c
Q 012679 223 GGHRS----RV-GSLAWNNHILTTGG---------MDGLIINNDVRVRDHIVETYRGHNQ-------------------E 269 (458)
Q Consensus 223 ~~~~~----~v-~~l~~~~~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~~h~~-------------------~ 269 (458)
..... .+ .+....+..++.++ .+|.+..+|..+++..-..-..... .
T Consensus 138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 42110 01 12222345565654 3678899999888754332211110 0
Q ss_pred e-EeEEEcCCCCEEEEEECCC------------------cEEEEeCCCCCCCCcceeeeeeccccc----ceeEEEec--
Q 012679 270 V-CGLKWSASGQQLASGGNDN------------------LLHIWDRSMASSNSVTQWLHRLEEHTS----AVKAIAWC-- 324 (458)
Q Consensus 270 v-~~l~~spd~~~l~sg~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~h~~----~v~~l~~~-- 324 (458)
| ....+.+.+..++.++.++ .|.-+|..+++. .+......|.. ......+.
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~----~W~~~~~~~~~~~~~~~s~p~~~~~ 293 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV----KWFYQTTPHDLWDYDGPNQPSLADI 293 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE----EEEeeCCCCCCcccccCCCCeEEec
Confidence 1 1234445566777777655 688888888876 22222222211 00000111
Q ss_pred --CCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEe----------------cCCCCc
Q 012679 325 --PFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH----------------GFTQNQ 384 (458)
Q Consensus 325 --p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------------g~~d~~ 384 (458)
-++. .+++.++ .+|.+...|.++|+.+....... ..+..+| ..+++.. ...+|.
T Consensus 294 ~~~~g~~~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 294 KPKDGKPVPAIVHAP--KNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cccCCCeeEEEEEEC--CCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 1122 2455554 89999999999999988765431 1122333 2222211 113678
Q ss_pred EEEEeCCCceeeEEEeCCC--------CcE--EEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCC
Q 012679 385 LTLWKYPSMVKMAELSGHT--------SRV--LFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA 443 (458)
Q Consensus 385 i~iwd~~~~~~~~~~~~h~--------~~V--~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~ 443 (458)
+.-.|..+++.+.+..... .+. ..++. .+..|+.++.||.|+.+|..+++.+.+...
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 8889999998877765331 111 11222 456888899999999999999998877554
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=9e-08 Score=86.28 Aligned_cols=142 Identities=22% Similarity=0.268 Sum_probs=113.3
Q ss_pred eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc-----eeeEEecCCCccc
Q 012679 154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN-----RQLRTLRGGHRSR 228 (458)
Q Consensus 154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~-----~~~~~~~~~~~~~ 228 (458)
-+++|.+..|-+-|+++|-. ..+. ..+.|.++.|...++++..|..+|.|..+|++.. .+...+. |.+.
T Consensus 227 hfs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ss 300 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSS 300 (425)
T ss_pred eecccccceeEEEEeecccc---cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcc
Confidence 37788899999999999864 2232 3667999999999999999999999999999754 3455555 8999
Q ss_pred EEEEEe---CCCeEEEEeCCCcEEEEEccCCCe--eEEEEcccccceEeE--EEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 229 VGSLAW---NNHILTTGGMDGLIINNDVRVRDH--IVETYRGHNQEVCGL--KWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 229 v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~l--~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
|+++.. ++..|++.+.+|.|.+||.+.-++ -+..+.||...-.-+ ...+....++++|.|...+||.+..+..
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 998764 789999999999999999986543 367788886544333 3456677889999999999999998765
No 311
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.66 E-value=1.5e-05 Score=79.58 Aligned_cols=275 Identities=13% Similarity=0.058 Sum_probs=164.5
Q ss_pred ceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEec----------------------CC-----
Q 012679 130 ERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVD----------------------DE----- 182 (458)
Q Consensus 130 ~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~----------------------~h----- 182 (458)
.++.-+|+-.++||. +.++|..|.|+|+-+.+++. +..+. ++
T Consensus 54 ~~~~v~pg~~deyy~---------f~SgG~sG~~~v~G~PSmr~--l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~ 122 (635)
T PRK02888 54 GKYEVAPGELDEYYG---------FWSGGHSGEVRILGLPSMRE--LMRIPVFNRDSATGWGITNESKKVLGEGARGGKY 122 (635)
T ss_pred CcccCCCCCcccEEE---------EeeCCccceEEEEecCCcce--EEEeeeecCCCCcccCCchhHHHHhhccccCCcc
Confidence 455667788888874 45667778888887776554 11111 00
Q ss_pred -CCCEEEEEEc-----CCCCEEEEEec-CCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEe-------C
Q 012679 183 -NGPVTSVNWA-----PDGRHIAIGLN-NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGG-------M 244 (458)
Q Consensus 183 -~~~V~~v~~s-----~~g~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~-------~ 244 (458)
.+......+| .||+||.+-.. ++.|...++...++-+.+.......+..+.+ +..++++++ .
T Consensus 123 ~~gD~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn 202 (635)
T PRK02888 123 LNGDTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN 202 (635)
T ss_pred cCCCcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC
Confidence 0011111222 26778877654 5566666766665544444323344444443 123333332 2
Q ss_pred C-----------CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC----CcEEEEeCCCCCCCCcceeee
Q 012679 245 D-----------GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND----NLLHIWDRSMASSNSVTQWLH 309 (458)
Q Consensus 245 d-----------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~ 309 (458)
| +.+.+.|..+.+...+...+ +....+.++|+|+++++.+.+ +++..-+...... +.
T Consensus 203 DGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~------~v 274 (635)
T PRK02888 203 DGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW------VV 274 (635)
T ss_pred CCCEeecccceeEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCce------EE
Confidence 3 34555565544322222221 233567889999999887632 2233322211110 11
Q ss_pred eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-----CCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCc
Q 012679 310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-----GACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384 (458)
Q Consensus 310 ~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~ 384 (458)
.+... .+ -++.++++..++ .++.|.+.|..+ .+.+..+..+.....+.++|||++++++ |..+++
T Consensus 275 vfni~--~i--ea~vkdGK~~~V-----~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVa-nklS~t 344 (635)
T PRK02888 275 VFNIA--RI--EEAVKAGKFKTI-----GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIAN-GKLSPT 344 (635)
T ss_pred EEchH--HH--HHhhhCCCEEEE-----CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEe-CCCCCc
Confidence 11110 00 133446665554 357899999998 5678888999999999999999999998 557899
Q ss_pred EEEEeCCCcee------------eEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 385 LTLWKYPSMVK------------MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 385 i~iwd~~~~~~------------~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
+.|+|+.+.+. +.+.+- .......+|.++|....|--.|..|..|++..
T Consensus 345 VSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 345 VTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 99999988653 444433 23345789999999888888999999999875
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.63 E-value=8.8e-05 Score=67.94 Aligned_cols=219 Identities=16% Similarity=0.161 Sum_probs=136.7
Q ss_pred CCeEEEEc--CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-----cCCeEEEEeCC-CceeeEEecC
Q 012679 152 SNVLAIAL--GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-----NNCQVQLWDST-ANRQLRTLRG 223 (458)
Q Consensus 152 ~~~la~~~--d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-----~dg~v~iwd~~-~~~~~~~~~~ 223 (458)
...++.+. +....+||..+++......-....----.-.||+||++|++.- ..|.|-|||.. +-+.+.++..
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s 96 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS 96 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC
Confidence 34445544 4578999999998744333221111122467999999999863 45789999998 6677777776
Q ss_pred CCcccEEEEEe--CCCeEEEEe------------------CCCcEEEEEccCCCeeEE-EE--cccccceEeEEEcCCCC
Q 012679 224 GHRSRVGSLAW--NNHILTTGG------------------MDGLIINNDVRVRDHIVE-TY--RGHNQEVCGLKWSASGQ 280 (458)
Q Consensus 224 ~~~~~v~~l~~--~~~~l~sg~------------------~dg~i~vwd~~~~~~~~~-~~--~~h~~~v~~l~~spd~~ 280 (458)
|.-.-..+.+ ++..|+++. .+-.+...|..++..+-+ .+ ..|...|..+++.++|.
T Consensus 97 -~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 97 -HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred -CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence 5555555556 455565552 223455555565553222 23 34777899999999987
Q ss_pred EEEEEECCCc-------EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679 281 QLASGGNDNL-------LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353 (458)
Q Consensus 281 ~l~sg~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~ 353 (458)
.++..-..|. |-+++....-. ....+......-...+-+|++++++..+++|+- .-+.+.+||..+++.+
T Consensus 176 V~~a~Q~qg~~~~~~PLva~~~~g~~~~-~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 176 VAFAMQYQGDPGDAPPLVALHRRGGALR-LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAVWDAATGRLL 252 (305)
T ss_pred EEEEEecCCCCCccCCeEEEEcCCCcce-eccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEEEECCCCCEe
Confidence 6665544332 33444322110 000000111233467889999998888888876 8899999999999988
Q ss_pred EEEeCCCCeEEEEEcCCCCeEEE
Q 012679 354 NSVDTGSQVCALLWNKNERELLS 376 (458)
Q Consensus 354 ~~~~~~~~v~~~~~s~~~~~l~~ 376 (458)
..... ..+|.++-.+++ ++++
T Consensus 253 ~~~~l-~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 253 GSVPL-PDACGVAPTDDG-FLVS 273 (305)
T ss_pred ecccc-CceeeeeecCCc-eEEe
Confidence 76543 457778777777 4443
No 313
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.62 E-value=0.00017 Score=77.51 Aligned_cols=287 Identities=18% Similarity=0.211 Sum_probs=174.2
Q ss_pred eeeeCCCCCCccccceeeccC-CCeEEEEcC----CEEEEEECCCCCeeeEEEec--CCCCCEEEEEEcCCCCEEEEEec
Q 012679 131 RTLDAPDLVDDYYLNLLDWGS-SNVLAIALG----STVYLWDASDGTTSELVTVD--DENGPVTSVNWAPDGRHIAIGLN 203 (458)
Q Consensus 131 ~~l~~~~~~~d~~~~~~~~~~-~~~la~~~d----~~v~iwd~~~~~~~~~~~~~--~h~~~V~~v~~s~~g~~la~g~~ 203 (458)
..|+.-.-.-+.--..++|.| ++++|+... ..|.+|.- +|-...-+.+. .....|..++|++|+..||+...
T Consensus 246 G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 246 GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 344443334555567899988 678887764 56777763 34333334443 34678999999999999999887
Q ss_pred CCeEEEEeCCCce--eeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC
Q 012679 204 NCQVQLWDSTANR--QLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS 278 (458)
Q Consensus 204 dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd 278 (458)
|. |++|-..+-. ..+.+.......+..+.|+ +..|...+.+|.+..+++.- ....+.. .+|+
T Consensus 325 ~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~-----~v~~s~~-------~~~~ 391 (928)
T PF04762_consen 325 DR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW-----DVSRSPG-------SSPN 391 (928)
T ss_pred CC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE-----EEEecCC-------CCcc
Confidence 74 9999887765 2233332234455669996 46788888878887776531 1111100 1122
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee-----
Q 012679 279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL----- 353 (458)
Q Consensus 279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~----- 353 (458)
+.-.+..=....+.+-.++....+.+.- ...+. -...|.+++|++.+..+++.. .||.|.+|........
T Consensus 392 D~g~vaVIDG~~lllTpf~~a~VPPPMs-~~~l~-~~~~v~~vaf~~~~~~~avl~---~d~~l~~~~~~~~~~~~~~~~ 466 (928)
T PF04762_consen 392 DNGTVAVIDGNKLLLTPFRRAVVPPPMS-SYELE-LPSPVNDVAFSPSNSRFAVLT---SDGSLSIYEWDLKNMWSVKPP 466 (928)
T ss_pred CceEEEEEeCCeEEEecccccCCCchHh-ceEEc-CCCCcEEEEEeCCCCeEEEEE---CCCCEEEEEecCCCcccccCc
Confidence 2222222233467777776655543321 23332 357899999999766554443 7999999885432211
Q ss_pred ---EEEe-----------CCCCeEEEEEcCCCCeEEEEecC-CCCcEEEEeCCCce---eeEEEeCCCCcEEEEEEcCCC
Q 012679 354 ---NSVD-----------TGSQVCALLWNKNERELLSSHGF-TQNQLTLWKYPSMV---KMAELSGHTSRVLFMAQSPDG 415 (458)
Q Consensus 354 ---~~~~-----------~~~~v~~~~~s~~~~~l~~~~g~-~d~~i~iwd~~~~~---~~~~~~~h~~~V~~l~~spdg 415 (458)
..+. ....+..++|..+...++..... ....+.++++...+ .+.....-.+.+..+...++.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (928)
T PF04762_consen 467 KLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDS 546 (928)
T ss_pred chhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCC
Confidence 1111 23457889998888777776543 45788888874332 333333344566666666666
Q ss_pred CEEEEEeCCCcEEEEecCCCC
Q 012679 416 CTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 416 ~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
..++.-..||.+...+.....
T Consensus 547 ~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 547 GSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred cEEEEEECCCEEEEeecCCCc
Confidence 556667789988866555443
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.61 E-value=0.00012 Score=67.17 Aligned_cols=236 Identities=14% Similarity=0.155 Sum_probs=153.0
Q ss_pred EEEEEEcC-CCCEEEEEecCCe-EEEEeCCCceeeEEecCCCccc----EEEEEeCCCeEEEEe-----CCCcEEEEEcc
Q 012679 186 VTSVNWAP-DGRHIAIGLNNCQ-VQLWDSTANRQLRTLRGGHRSR----VGSLAWNNHILTTGG-----MDGLIINNDVR 254 (458)
Q Consensus 186 V~~v~~s~-~g~~la~g~~dg~-v~iwd~~~~~~~~~~~~~~~~~----v~~l~~~~~~l~sg~-----~dg~i~vwd~~ 254 (458)
...++.+| .+..++.+-.-|. ..+||..+++....+.. ...+ -.+++-+|.+|++.- ..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 45678888 6667777877774 78899999998887764 2222 223334688888864 35899999999
Q ss_pred CCCeeEEEEcccccceEeEEEcCCCCEEEEEEC------------------CCcEEEEeCCCCCCCCcceeeeee--ccc
Q 012679 255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGN------------------DNLLHIWDRSMASSNSVTQWLHRL--EEH 314 (458)
Q Consensus 255 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~------------------dg~i~iwd~~~~~~~~~~~~~~~~--~~h 314 (458)
..-..+..+..|.-.-..+.+.|||+.|+++-. +-.+.+.|..++.... ...+ ..|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~----q~~Lp~~~~ 161 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE----QVELPPDLH 161 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee----eeecCcccc
Confidence 555557777777777788899999988887631 1233444444444310 1224 347
Q ss_pred ccceeEEEecCCCCcEEEEeC-CC-CC--CeEEEEECCCCCeeEEEe--------CCCCeEEEEEcCCCCeEEEEecCCC
Q 012679 315 TSAVKAIAWCPFQSNLLATGG-GG-GD--RCIKFWNTHTGACLNSVD--------TGSQVCALLWNKNERELLSSHGFTQ 382 (458)
Q Consensus 315 ~~~v~~l~~~p~~~~ll~s~~-g~-~d--~~i~lwd~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~g~~d 382 (458)
...|..+++.+++.-+++.-- |. .+ --|-+++ .++.+..+. ....+-++++++++..+++++- ..
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP-rG 238 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP-RG 238 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC-CC
Confidence 788999999997554444321 00 01 1233333 333333332 2456899999999999988753 67
Q ss_pred CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 383 NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 383 ~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
|.+.+||..+++.+....- ..+..++..+++ +++|.+. |. ++.+...
T Consensus 239 g~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~-G~--~~~~~~~ 285 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQ-GQ--LIRLSPD 285 (305)
T ss_pred CEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCC-cc--EEEccCc
Confidence 8999999999998876542 346778887777 6665544 44 4444433
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=2.6e-07 Score=83.36 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=116.3
Q ss_pred EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-----CeeEEEe
Q 012679 283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-----ACLNSVD 357 (458)
Q Consensus 283 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-----~~~~~~~ 357 (458)
++.|.+-.|.+-|+.++.. +.+. ..+.|.++.|... ..++..|. ..|.|..+|++.+ .+...+-
T Consensus 228 fs~G~sqqv~L~nvetg~~-------qsf~-sksDVfAlQf~~s-~nLv~~Gc--RngeI~~iDLR~rnqG~~~~a~rly 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-------QSFQ-SKSDVFALQFAGS-DNLVFNGC--RNGEIFVIDLRCRNQGNGWCAQRLY 296 (425)
T ss_pred ecccccceeEEEEeecccc-------cccc-cchhHHHHHhccc-CCeeEecc--cCCcEEEEEeeecccCCCcceEEEE
Confidence 5566677888999888753 2333 5678889999874 56666655 9999999999864 5788889
Q ss_pred CCCCeEEEEEcC-CCCeEEEEecCCCCcEEEEeCCCcee---eEEEeCCCCcEEE--EEEcCCCCEEEEEeCCCcEEEEe
Q 012679 358 TGSQVCALLWNK-NERELLSSHGFTQNQLTLWKYPSMVK---MAELSGHTSRVLF--MAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 358 ~~~~v~~~~~s~-~~~~l~~~~g~~d~~i~iwd~~~~~~---~~~~~~h~~~V~~--l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
+++.|+++..-. ++.+|+++ ..+|.|.+||.+-.+. +.+++||...-.. +-+.+....++++|.|...|||.
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS--~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMAS--DMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred cCcchhhhhhhccccceEeec--cCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 999999998887 77888874 4899999999987666 8899999754333 33456677899999999999999
Q ss_pred cCCCCcccccCCCCC
Q 012679 432 VFGAPQVISKSAPKP 446 (458)
Q Consensus 432 ~~~~~~~~~~~~~~~ 446 (458)
+..+...-+.+.+.+
T Consensus 375 l~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 375 LDSGHLLCTIPFPYS 389 (425)
T ss_pred cccCceeeccCCCCc
Confidence 998876665544433
No 316
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.60 E-value=3.8e-05 Score=69.20 Aligned_cols=204 Identities=10% Similarity=0.110 Sum_probs=121.4
Q ss_pred EEecCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679 177 VTVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV 253 (458)
Q Consensus 177 ~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 253 (458)
..+.+-...+..++|.|+.+ ++++....+.|..++. +|+.++.+........-.|++ ++.++++--+++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34556566799999999754 6677777888888886 578888887534566778888 3445555556899999988
Q ss_pred cCCCe-----eEEEEc-----ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee------ecccccc
Q 012679 254 RVRDH-----IVETYR-----GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR------LEEHTSA 317 (458)
Q Consensus 254 ~~~~~-----~~~~~~-----~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~------~~~h~~~ 317 (458)
..... ....+. .+...+-+++|.+.++.|+.+-...-..||.+.......... ... .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF-VSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E-EEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee-eccccccccccceecc
Confidence 43321 111111 345668999999998888888877777777765411100000 011 1123345
Q ss_pred eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC----------CCeEEEEEcCCCCeEEEEecCCCCcEEE
Q 012679 318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG----------SQVCALLWNKNERELLSSHGFTQNQLTL 387 (458)
Q Consensus 318 v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~g~~d~~i~i 387 (458)
+.+++++|..+.+++... .++.|..+| .+|+.+..+... .+.-.++|.++|+..+++ +-+..++
T Consensus 173 ~S~l~~~p~t~~lliLS~--es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs---EpNlfy~ 246 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSD--ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS---EPNLFYR 246 (248)
T ss_dssp --EEEEETTTTEEEEEET--TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE---TTTEEEE
T ss_pred ccceEEcCCCCeEEEEEC--CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc---CCceEEE
Confidence 789999998888888876 889999999 778887777543 368899999999777763 4555555
Q ss_pred E
Q 012679 388 W 388 (458)
Q Consensus 388 w 388 (458)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.58 E-value=3.7e-05 Score=71.22 Aligned_cols=235 Identities=11% Similarity=0.083 Sum_probs=148.8
Q ss_pred CEEEEEECCCCCeeeEEEecCC-C----CCEEEEEEcCCCCEEEEEec--CCeEEEEeCCCceeeEEecCCCcccEEEEE
Q 012679 161 STVYLWDASDGTTSELVTVDDE-N----GPVTSVNWAPDGRHIAIGLN--NCQVQLWDSTANRQLRTLRGGHRSRVGSLA 233 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h-~----~~V~~v~~s~~g~~la~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~ 233 (458)
..|.+||..+-....-..++.. . ......+++.||+++++.-- --.|.|.|+...+.+.++. -.+...-.-
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PGC~~iyP 144 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TPGCWLIYP 144 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GTSEEEEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CCCEEEEEe
Confidence 4799999998776555555532 1 12334678899999888643 4479999999999998887 344444444
Q ss_pred eCCCeEEEEeCCCcEEEEEccCCCeeEEEE----cccccc-eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679 234 WNNHILTTGGMDGLIINNDVRVRDHIVETY----RGHNQE-VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL 308 (458)
Q Consensus 234 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~~h~~~-v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 308 (458)
+.+.-+.+-|.||.+....+....+..... .....+ +..-.+...+..++--+.+|.|+--|+....... .
T Consensus 145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~----~ 220 (342)
T PF06433_consen 145 SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF----G 220 (342)
T ss_dssp EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE----E
T ss_pred cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc----c
Confidence 456778899999999999888655433221 111112 2233444555566667888999988887665311 1
Q ss_pred eeecc----------cccceeEEEecCCCCcEEEEeC-C----CCCC--eEEEEECCCCCeeEEEeCCCCeEEEEEcCCC
Q 012679 309 HRLEE----------HTSAVKAIAWCPFQSNLLATGG-G----GGDR--CIKFWNTHTGACLNSVDTGSQVCALLWNKNE 371 (458)
Q Consensus 309 ~~~~~----------h~~~v~~l~~~p~~~~ll~s~~-g----~~d~--~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~ 371 (458)
..... ..+.-.-+++++..+.|++.-. | ..|+ .|-++|+.+++.+..+....++.++..+.+.
T Consensus 221 ~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~ 300 (342)
T PF06433_consen 221 KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDD 300 (342)
T ss_dssp EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSS
T ss_pred CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCC
Confidence 11111 1123345777765555544321 1 1122 4777899999999999988889999999998
Q ss_pred CeEEEEecCCCCcEEEEeCCCceeeEEEeC
Q 012679 372 RELLSSHGFTQNQLTLWKYPSMVKMAELSG 401 (458)
Q Consensus 372 ~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~ 401 (458)
+-++.+....++.|.+||..+++.+.++.+
T Consensus 301 ~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 301 KPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp S-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 855543333678999999999999998864
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=4.3e-06 Score=83.64 Aligned_cols=186 Identities=13% Similarity=0.154 Sum_probs=127.4
Q ss_pred cccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679 142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~ 221 (458)
..+.++..+...++.|.-.|.|++.+....- .+...|... ..+|.++++|+.||+|.|-.+-+.+...++
T Consensus 40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVHDKFFALGTHRGAVYLTTCQGNP----KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhhcceeeeccccceEEEEecCCcc----ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 3466777888889999999999999976432 122223332 568999999999999999999888887777
Q ss_pred cCCCcccEEEEEeCC-------CeEEEEeCCCcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 222 RGGHRSRVGSLAWNN-------HILTTGGMDGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 222 ~~~~~~~v~~l~~~~-------~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
. ...++.++++++ ..+++|+.-| +.++.-+--+... ..+..-.++|.++.|. |+++|-++.+| |+|
T Consensus 110 d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 110 D--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred e--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 6 566888888864 5799999999 7776533222111 1355667899999994 88999988776 899
Q ss_pred EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH 348 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~ 348 (458)
||..........++-.........-..+.|.+. ..++.| ...+|++..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~--~~LVIG---W~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE--DRLVIG---WGDSVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCC--CeEEEe---cCCeEEEEEEe
Confidence 998877652221111111111223356788873 344444 45578888776
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=3.5e-07 Score=57.16 Aligned_cols=37 Identities=27% Similarity=0.708 Sum_probs=35.0
Q ss_pred eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEe
Q 012679 175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD 211 (458)
Q Consensus 175 ~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd 211 (458)
.+..+.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4778899999999999999999999999999999997
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=4.1e-06 Score=84.03 Aligned_cols=110 Identities=20% Similarity=0.369 Sum_probs=88.0
Q ss_pred CEEEEEEcCCCCEEEEEe----cCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCe
Q 012679 185 PVTSVNWAPDGRHIAIGL----NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDH 258 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~----~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~ 258 (458)
.-+-.+|+|...++|+++ ..|.|.||- ++|++.+... .+-.+++++|++ -.|+.|-.-|.+.+|...+.+.
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 344567999999999886 457899984 6777655554 455677899986 4677888899999999876553
Q ss_pred eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 259 ~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
......|..+|..+.||++|..++++.+-|.|.+|.+..
T Consensus 94 -htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 94 -HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred -eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 344567999999999999999999999999999998763
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=3.4e-05 Score=77.90 Aligned_cols=211 Identities=12% Similarity=0.177 Sum_probs=139.8
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCccc-EEEEEe-CC-CeEEEEeCCC-----cEEEEEccCC
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR-VGSLAW-NN-HILTTGGMDG-----LIINNDVRVR 256 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~-~~-~~l~sg~~dg-----~i~vwd~~~~ 256 (458)
.|+| |++.+..+|.|+.+|.|.+.+ ...+.++.+.. +... |..+.. ++ .+|++.+.|+ .+++|+++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa-~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQA-YEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehhee-cchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4444 577888999999999998887 33344466665 5555 444444 33 5788877765 4899998654
Q ss_pred C-----eeE---EEEc----ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEec
Q 012679 257 D-----HIV---ETYR----GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324 (458)
Q Consensus 257 ~-----~~~---~~~~----~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 324 (458)
+ .++ ..+. ....++++++.+.+-+.+|+|-.+|.|..+.-.-...... + ..-......+|+.+++.
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r-~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-R-QDYSHRGKEPITGLALR 180 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-c-eeeeccCCCCceeeEEe
Confidence 1 222 1111 2356789999999999999999999999986432221110 0 12222346789999999
Q ss_pred CCCCcEEEEeCCCCCCeEEEEECCCCCe-eEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-C
Q 012679 325 PFQSNLLATGGGGGDRCIKFWNTHTGAC-LNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-G 401 (458)
Q Consensus 325 p~~~~ll~s~~g~~d~~i~lwd~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-~ 401 (458)
.++..++.+. .-..|.+|.+....+ ...++ ++..+.+..+++....++++ ....+.+|+.+...+-..+. |
T Consensus 181 ~d~~s~lFv~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca---~~e~l~fY~sd~~~~cfaf~~g 254 (933)
T KOG2114|consen 181 SDGKSVLFVA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA---GSEFLYFYDSDGRGPCFAFEVG 254 (933)
T ss_pred cCCceeEEEE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe---cCceEEEEcCCCcceeeeecCC
Confidence 8888733333 345799999884442 33344 45678888888877756664 36789999998777766776 6
Q ss_pred CCCcEE
Q 012679 402 HTSRVL 407 (458)
Q Consensus 402 h~~~V~ 407 (458)
|.....
T Consensus 255 ~kk~~~ 260 (933)
T KOG2114|consen 255 EKKEML 260 (933)
T ss_pred CeEEEE
Confidence 665443
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=7.2e-06 Score=82.33 Aligned_cols=109 Identities=20% Similarity=0.314 Sum_probs=84.7
Q ss_pred ccccceeeccC-CCeEEEEc-----CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 012679 141 DYYLNLLDWGS-SNVLAIAL-----GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA 214 (458)
Q Consensus 141 d~~~~~~~~~~-~~~la~~~-----d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~ 214 (458)
|...+..+|+| .-+++++. +|+|.||- ++|+...-.+.+-| +++++|+|..-.|+.|-.-|.+.+|...+
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCC
Confidence 33445578988 45666664 68999994 66775444444444 67899999999999999999999999776
Q ss_pred ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEcc
Q 012679 215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVR 254 (458)
Q Consensus 215 ~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 254 (458)
.+. +++...|..+|..+.| +|..++++..-|.+.+|...
T Consensus 91 ~e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 TET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 654 4444459999999999 58999999999999999775
No 323
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.51 E-value=3e-05 Score=75.16 Aligned_cols=245 Identities=16% Similarity=0.208 Sum_probs=137.0
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee-------------------------EE------------------e
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL-------------------------RT------------------L 221 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~-------------------------~~------------------~ 221 (458)
.|+.|.|+++..-|++|...|.|.||.....+.. .. +
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5899999999889999999999999864322111 01 1
Q ss_pred cCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEE-EEcc------cccceEeEEEcC-----CC---CEEEEE
Q 012679 222 RGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVE-TYRG------HNQEVCGLKWSA-----SG---QQLASG 285 (458)
Q Consensus 222 ~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~~------h~~~v~~l~~sp-----d~---~~l~sg 285 (458)
. ...++|++++.+ =.+++.|..+|.+.|.|+|...-+.. .+.. ....|+++.|.- |+ -.|++|
T Consensus 83 ~-~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 D-AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ----S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred e-ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1 135788888884 48999999999999999986553322 1112 234688888863 33 478899
Q ss_pred ECCCcEEEEeCCC-CCCCCcceeeeeecccccceeEEE-ecCC--------------------CCcEEEEeCCCCCCeEE
Q 012679 286 GNDNLLHIWDRSM-ASSNSVTQWLHRLEEHTSAVKAIA-WCPF--------------------QSNLLATGGGGGDRCIK 343 (458)
Q Consensus 286 ~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~-~~p~--------------------~~~ll~s~~g~~d~~i~ 343 (458)
++.|.+.+|.+.- .......+.......+.+.|..+. ++.+ -+.+++++ .+..++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv---Se~~ir 238 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV---SESDIR 238 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE---cccceE
Confidence 9999999998752 222111122222234556655554 3211 11244444 478899
Q ss_pred EEECCCCCeeEEEeCCCCe-EEEEEc-----CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC----CcEEEEEEcC
Q 012679 344 FWNTHTGACLNSVDTGSQV-CALLWN-----KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT----SRVLFMAQSP 413 (458)
Q Consensus 344 lwd~~~~~~~~~~~~~~~v-~~~~~s-----~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~----~~V~~l~~sp 413 (458)
++...+.+........... ..+.+- ..+..|++.. .+|.|++|.++..+.+..+.-+. ..+....+++
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE--CCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 9999988877665522222 233442 2445555543 79999999999999998887543 3455678899
Q ss_pred CCCEEEEEeCCCcEEEEecCCCC
Q 012679 414 DGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 414 dg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
+|..++-.+.. .+.++.+....
T Consensus 317 ~Gdi~~~~gps-E~~l~sv~~~~ 338 (395)
T PF08596_consen 317 NGDIFYWTGPS-EIQLFSVWGEG 338 (395)
T ss_dssp TS-EEEE-SSS-EEEEEEEES--
T ss_pred CCCEEEEeCcc-cEEEEEEEccC
Confidence 99987766544 45555554443
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.48 E-value=0.0002 Score=66.48 Aligned_cols=269 Identities=15% Similarity=0.153 Sum_probs=150.4
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCceeeEEecCCCcccEE
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL----------NNCQVQLWDSTANRQLRTLRGGHRSRVG 230 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~----------~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 230 (458)
+.++|+|.++++. +-.+. .+..-.+..+|+++.++++. ..-.|.+||..+......+......+..
T Consensus 17 ~rv~viD~d~~k~--lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEE--EEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcE--EEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4899999999887 33333 23345577899999888753 2336999999999887766532221222
Q ss_pred --------EEEeCCCeEEEE--eCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679 231 --------SLAWNNHILTTG--GMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 231 --------~l~~~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
.+.-++++++.. +-...|.|-|+..++. +..+. -+=|.+.+-...+-|.+-|.||.+.-..+....
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv-v~ei~---~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV-VGEID---TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE-EEEEE---GTSEEEEEEEETTEEEEEETTSCEEEEEETSTS
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCce-eeeec---CCCEEEEEecCCCceEEEecCCceEEEEECCCC
Confidence 222234444433 2234555666654432 22221 122333332223568888999999988887544
Q ss_pred CCCcceeeeeecccccc-eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee--EEEeC-----------CCCeEEEE
Q 012679 301 SNSVTQWLHRLEEHTSA-VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL--NSVDT-----------GSQVCALL 366 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~--~~~~~-----------~~~v~~~~ 366 (458)
... ......+.....+ +..-++...+..++... .+|.|+--|+...... ..+.. .+...-++
T Consensus 169 k~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 169 KEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp SEE-EEEEEESSTTTS-B-S--EEETTTTEEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred CEe-EeeccccCCCCcccccccceECCCCeEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence 321 1111122222222 22334444344444332 7889998888766532 22211 12234566
Q ss_pred EcCCCCeEEEE-ecCCC-------CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEE-eCCCcEEEEecCCCC
Q 012679 367 WNKNERELLSS-HGFTQ-------NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASA-AADETLRFWNVFGAP 436 (458)
Q Consensus 367 ~s~~~~~l~~~-~g~~d-------~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~-s~Dg~i~iW~~~~~~ 436 (458)
+++..+.|++. +...+ ..|.++|+.+.+.+..+.. ...+.+|+.+.|.+ +|++. ..++.|.+||..+++
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 77665555443 21122 2588889999999998863 34577999998766 55544 458999999999988
Q ss_pred cccccC
Q 012679 437 QVISKS 442 (458)
Q Consensus 437 ~~~~~~ 442 (458)
.+.+..
T Consensus 324 ~~~~~~ 329 (342)
T PF06433_consen 324 LVRSIE 329 (342)
T ss_dssp EEEEE-
T ss_pred EEeehh
Confidence 776654
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=2e-05 Score=79.04 Aligned_cols=183 Identities=20% Similarity=0.303 Sum_probs=131.4
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVET 262 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 262 (458)
.+.++|++++ +++|+.|+.+|.|++++....- .+... |... .-.|.++++|+.||.|.|..+-+.+.. .
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~-~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~--~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFD-HSSS----ILEGEYVASCSDDGKVVIGSLFTDDEI--T 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccc-cccc----ccCCceEEEecCCCcEEEeeccCCccc--e
Confidence 3457777775 6799999999999999976443 33332 5444 446899999999999999988776642 2
Q ss_pred EcccccceEeEEEcCC-----CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679 263 YRGHNQEVCGLKWSAS-----GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 263 ~~~h~~~v~~l~~spd-----~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~ 337 (458)
......++.+++++|+ .+.+++||.-| +.++.-+-..... ...+....++|.++.|.. +++|-+
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~----~v~l~~~eG~I~~i~W~g---~lIAWa--- 176 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD----SVVLSEGEGPIHSIKWRG---NLIAWA--- 176 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc----ceeeecCccceEEEEecC---cEEEEe---
Confidence 2234678999999997 67899999988 7777643322211 113456678999999964 566655
Q ss_pred CCCeEEEEECCCCCeeEEEeCCC-------CeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679 338 GDRCIKFWNTHTGACLNSVDTGS-------QVCALLWNKNERELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 338 ~d~~i~lwd~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~ 391 (458)
.|--|++||+.+++.+..++... -.+.+.|.++.+.++ | ...+|+|..++
T Consensus 177 nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI---G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 177 NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI---G-WGDSVKICSIK 233 (846)
T ss_pred cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE---e-cCCeEEEEEEe
Confidence 56779999999999888775533 256788988777666 4 34568887776
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.44 E-value=9.4e-08 Score=92.80 Aligned_cols=199 Identities=19% Similarity=0.291 Sum_probs=133.6
Q ss_pred cccceeeccC--C-C-eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEe----cCCeEEEEeC
Q 012679 142 YYLNLLDWGS--S-N-VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGL----NNCQVQLWDS 212 (458)
Q Consensus 142 ~~~~~~~~~~--~-~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~----~dg~v~iwd~ 212 (458)
-|+.|++|.- + - +.+|..+|.|-+-......-..-...+++....++++|++ |.++||+|. .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3667777753 2 2 4445567888888776543322334567788999999998 778888884 3567999999
Q ss_pred CCc--e--eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEE
Q 012679 213 TAN--R--QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASG 285 (458)
Q Consensus 213 ~~~--~--~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg 285 (458)
.++ . ....+..+......+++| +..++.+|.....+.++|++.... ....-.+..+.++...| .++++++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~--~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD--SVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh--hhhhhhhhhcccceecCCCCCceecc
Confidence 876 1 112222223445568888 567888999999999999984321 22222345677888888 78888776
Q ss_pred ECCCcEEEEe-CCCCCCCCcceeeeeecc----cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 286 GNDNLLHIWD-RSMASSNSVTQWLHRLEE----HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 286 ~~dg~i~iwd-~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
. ||.|.+|| .+..+.. +..+.. ....+..++|+|....++++.. ...++|+++|+..
T Consensus 215 ~-dg~iAiwD~~rnienp-----l~~i~~~~N~~~~~l~~~aycPtrtglla~l~-RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENP-----LQIILRNENKKPKQLFALAYCPTRTGLLAVLS-RDSITIRLYDICV 276 (783)
T ss_pred c-cCceeeccchhhhccH-----HHHHhhCCCCcccceeeEEeccCCcchhhhhc-cCcceEEEecccc
Confidence 5 89999999 3333221 222222 2235899999999888888775 2557899999863
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.40 E-value=6.3e-05 Score=74.55 Aligned_cols=277 Identities=14% Similarity=0.165 Sum_probs=159.4
Q ss_pred cccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-----
Q 012679 142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR----- 216 (458)
Q Consensus 142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~----- 216 (458)
.+++|++-+...++.|+.-|.||+|+-..++.. .....+..+.+..+..+++..++|.|+..|.|.++-+....
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 467888888888999999999999998777642 23333445667777889999999999999999999876532
Q ss_pred eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC---eeEEEEcccccceEeEEEcCCCCEEEEEECCCcE
Q 012679 217 QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD---HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLL 291 (458)
Q Consensus 217 ~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i 291 (458)
.+......|..+|++++| ++..+++|...|.|....+.... .....+....++|-.+.+. ++.+|++... ..
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~--r~ 191 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT--RC 191 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh--hh
Confidence 222333347899999999 57899999999999998887621 1123333456677777764 3444444332 23
Q ss_pred EEEeCCCCCCCCcceeeeeeccccc-ceeEEEecCC----CCcEEEEeCCCCCCeEEEEECCC-CCeeEEEeC-------
Q 012679 292 HIWDRSMASSNSVTQWLHRLEEHTS-AVKAIAWCPF----QSNLLATGGGGGDRCIKFWNTHT-GACLNSVDT------- 358 (458)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~p~----~~~ll~s~~g~~d~~i~lwd~~~-~~~~~~~~~------- 358 (458)
.+++.+...... +-+- ...+ .-...+|-|. +.-.++++ ---.|+|..+- |+.+++...
T Consensus 192 ~Lc~tE~eti~Q----IG~k-~R~~~~~~GACF~~g~~~~q~~~Iyca----RPG~RlWead~~G~V~~Thqfk~ala~~ 262 (726)
T KOG3621|consen 192 ILCQTEAETITQ----IGKK-PRKSLIDFGACFFPGQCKAQKPQIYCA----RPGLRLWEADFAGEVIKTHQFKDALARP 262 (726)
T ss_pred heeecchhHHHH----hcCC-CcCCccccceEEeeccccCCCceEEEe----cCCCceEEeecceeEEEeeehhhhhccC
Confidence 344443332100 1000 0111 1123344442 33344443 34478887653 454444321
Q ss_pred -------CC-----------CeEEEE----EcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC
Q 012679 359 -------GS-----------QVCALL----WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC 416 (458)
Q Consensus 359 -------~~-----------~v~~~~----~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~ 416 (458)
.+ +-..+. +.-++..+++- .+-.|+|+|..+.+.+.-.. ....|..++. .|+
T Consensus 263 p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~---te~Giyv~d~~~~~v~l~se-~~~DI~dVs~--~~n 336 (726)
T KOG3621|consen 263 PAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAW---TEVGIYVFDSNNSQVYLWSE-GGHDILDVSH--CGN 336 (726)
T ss_pred CCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEe---ecceEEEEEeccceEEEeec-CCCceeEEee--cCc
Confidence 00 000000 01111222221 23337788877666554432 2334555544 455
Q ss_pred EEEEEeCCCcEEEEecCCCCc
Q 012679 417 TVASAAADETLRFWNVFGAPQ 437 (458)
Q Consensus 417 ~l~s~s~Dg~i~iW~~~~~~~ 437 (458)
-|..--.|+.+++..+...++
T Consensus 337 eiFvL~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 337 EIFVLNLDRGLKVESVASRQR 357 (726)
T ss_pred eEEEEecCCceeEEEeehhHH
Confidence 566666777777777765443
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.40 E-value=0.0011 Score=65.05 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=85.4
Q ss_pred eEEEecCCCCcEEEEeC--CCCCCe----EEEEECCCCC----eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEE
Q 012679 319 KAIAWCPFQSNLLATGG--GGGDRC----IKFWNTHTGA----CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLW 388 (458)
Q Consensus 319 ~~l~~~p~~~~ll~s~~--g~~d~~----i~lwd~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw 388 (458)
.++.|+-.+++.+.+-. -+.+|. ..+|++...+ .+..+...+++.+++++|+...++. |+.||.|.+|
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvl--GC~DgSiiLy 286 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVL--GCEDGSIILY 286 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEE--EecCCeEEEE
Confidence 46667665555544431 012222 3456665443 2345567899999999999999999 6699999999
Q ss_pred eCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 389 d~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
|...+... +....-.++.++|+|+|..+++|+.-|.|.+||+.-........
T Consensus 287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeec
Confidence 98766333 33345667899999999999999999999999997665544443
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.40 E-value=7.4e-05 Score=73.19 Aligned_cols=206 Identities=15% Similarity=0.202 Sum_probs=129.5
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe---cC-CeEEEEeCCCceeeEEecCCCcccEEEEEeCC
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL---NN-CQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN 236 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~---~d-g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~ 236 (458)
..+.+=|.+ |.. ...+......+..-+|+|++..++.-. .. ..+.++|+.+++....+...........+.+|
T Consensus 173 ~~l~~~D~d-g~~--~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYN--QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-Ccc--eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCC
Confidence 355565655 443 233333456688889999998766542 23 46999999998876666532334444445566
Q ss_pred C-eEEEEeCCCc--EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CC--cEEEEeCCCCCCCCcceeeee
Q 012679 237 H-ILTTGGMDGL--IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN--LLHIWDRSMASSNSVTQWLHR 310 (458)
Q Consensus 237 ~-~l~sg~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~ 310 (458)
+ ++++...||. |+++|+..+. ...+....+.-+.-.|+|||+.++-.+. .| .|.++|.+.... ..
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-------~r 320 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-------TR 320 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-------eE
Confidence 4 5556667775 5566776555 2334433344447789999999977664 44 355666655443 22
Q ss_pred ecccccceeEEEecCCCCcEEEEeCCCCCCe--EEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC
Q 012679 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRC--IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF 380 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~--i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~ 380 (458)
+......-..-.|+|++..++.... .+|. |.+.|+.++...+.+........-.|.++++.++..++.
T Consensus 321 iT~~~~~~~~p~~SpdG~~i~~~~~--~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 321 LTFSGGGNSNPVWSPDGDKIVFESS--SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred eeccCCCCcCccCCCCCCEEEEEec--cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 2222222227789999998888763 3444 777777777666666666666677889999988886653
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.38 E-value=3.1e-07 Score=89.31 Aligned_cols=240 Identities=17% Similarity=0.171 Sum_probs=158.1
Q ss_pred CCCEEEEEEcCC--CCEEEEEecCCeEEEEeCCCceee-EEecCCCcccEEEEEeC---CCeEEEEe----CCCcEEEEE
Q 012679 183 NGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANRQL-RTLRGGHRSRVGSLAWN---NHILTTGG----MDGLIINND 252 (458)
Q Consensus 183 ~~~V~~v~~s~~--g~~la~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~v~~l~~~---~~~l~sg~----~dg~i~vwd 252 (458)
...+.|+++.-+ ...+++|..+|.|.+-.+....-- ..+..++...+++++|+ .+.|++|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 445778887653 458899999999999887654433 44444588899999996 36777773 466899999
Q ss_pred ccCCCe-eE--EEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679 253 VRVRDH-IV--ETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS 328 (458)
Q Consensus 253 ~~~~~~-~~--~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 328 (458)
+.+.-. +. ..+. +......+++|-.+.+++.+|.....+.++|++.... ....-.+..|..+...|+..
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-------~~~svnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-------SVSSVNTKYVQGITVDPFSP 208 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-------hhhhhhhhhcccceecCCCC
Confidence 987621 00 1111 2334455888988999999999999999999985432 11112344677888999888
Q ss_pred cEEEEeCCCCCCeEEEEEC-CCC-CeeEEEeC-----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc--------
Q 012679 329 NLLATGGGGGDRCIKFWNT-HTG-ACLNSVDT-----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-------- 393 (458)
Q Consensus 329 ~ll~s~~g~~d~~i~lwd~-~~~-~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-------- 393 (458)
..+++. .|+.|.+||. ++- .++..+.. ..++..++|+|...-++++.....++|+++|+..-
T Consensus 209 nY~cs~---~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn 285 (783)
T KOG1008|consen 209 NYFCSN---SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANN 285 (783)
T ss_pred Cceecc---ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccc
Confidence 888865 6999999993 332 22322222 24699999999887777766667889999987421
Q ss_pred eeeEE------EeCCC---CcEEEEEEcCCC--CEEEEEeCCCcEEEEecC
Q 012679 394 VKMAE------LSGHT---SRVLFMAQSPDG--CTVASAAADETLRFWNVF 433 (458)
Q Consensus 394 ~~~~~------~~~h~---~~V~~l~~spdg--~~l~s~s~Dg~i~iW~~~ 433 (458)
..... ++ |. +.|.+..|++.. ...+++....++.-+++.
T Consensus 286 ~~~~~~~s~~~~q-~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 286 SVFVNYESKYPVQ-PNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred cceeeeccccccc-ccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 01111 12 22 457777777643 334445555555555554
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=8.5e-05 Score=68.85 Aligned_cols=251 Identities=14% Similarity=0.142 Sum_probs=138.4
Q ss_pred CCCCCCceeeeCCCCCC-------ccccceeeccC-C--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC
Q 012679 124 HIPQSSERTLDAPDLVD-------DYYLNLLDWGS-S--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP 193 (458)
Q Consensus 124 ~i~~~~~~~l~~~~~~~-------d~~~~~~~~~~-~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~ 193 (458)
.+|+---++|+.+++.. ...+..+++++ + -+..++.++.|.|.|+++... ...+..+ ..+++++|.-
T Consensus 169 ~lpGvGv~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~--vssy~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 169 LLPGVGVQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV--VSSYIAY-NQIWSCCWDL 245 (463)
T ss_pred cCCccceEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee--eeheecc-CCceeeeecc
Confidence 44444455555544432 22466678877 2 367788899999999998876 4444444 7899999987
Q ss_pred C-CCEEEEEecCCeEEEEeCCCcee-eEEecC-CCcccEEEEEe--------CCCeEEEEeCCCcEEEEEccCCCe-eEE
Q 012679 194 D-GRHIAIGLNNCQVQLWDSTANRQ-LRTLRG-GHRSRVGSLAW--------NNHILTTGGMDGLIINNDVRVRDH-IVE 261 (458)
Q Consensus 194 ~-g~~la~g~~dg~v~iwd~~~~~~-~~~~~~-~~~~~v~~l~~--------~~~~l~sg~~dg~i~vwd~~~~~~-~~~ 261 (458)
| .++|..|..+|.|.|||+...+- +..+.. -...+|..++. .+.+|+....+ +..|++..... ...
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~ 323 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPC 323 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCc
Confidence 5 46788888999999999976542 222221 13345555544 13444444332 44555543221 111
Q ss_pred EEc-ccccceEeEEEcCCCCEEEEEECCC-----------------cEEEEeCCCCCCCCcceeeeeecccccceeEEEe
Q 012679 262 TYR-GHNQEVCGLKWSASGQQLASGGNDN-----------------LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323 (458)
Q Consensus 262 ~~~-~h~~~v~~l~~spd~~~l~sg~~dg-----------------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 323 (458)
.+. +..+...++.+++-.+.++..-..+ --.||-.+..-.... ..+ -+.. .++.-
T Consensus 324 vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~---~~k--l~t~--~ai~~ 396 (463)
T KOG1645|consen 324 VLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSK---QTK--LSTT--QAIRA 396 (463)
T ss_pred ccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCc---ccc--cccc--cceec
Confidence 111 2234445555555444443332210 011222111100000 000 0111 12222
Q ss_pred cCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcC-CC-CeEEEEecCCCCcEEEEeCC
Q 012679 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK-NE-RELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 324 ~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~-~~-~~l~~~~g~~d~~i~iwd~~ 391 (458)
.++...++..++ .-+.+.+||..+++.++++....+|..++... ++ .+|++- .|..++||..+
T Consensus 397 ~~~nn~iv~~gd--~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L---Td~~v~Iyk~e 461 (463)
T KOG1645|consen 397 VEDNNYIVVVGD--STNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL---TDDRVHIYKNE 461 (463)
T ss_pred cccccEEEEecC--CcceeEEeccchhheeeecccCcceeecceeecCCcchhhhe---ecceEEEEecC
Confidence 344444444443 77899999999999999999998888887654 33 344443 47788888754
No 332
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.37 E-value=0.00022 Score=68.90 Aligned_cols=253 Identities=16% Similarity=0.229 Sum_probs=139.5
Q ss_pred cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCC-------------
Q 012679 159 LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGH------------- 225 (458)
Q Consensus 159 ~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~------------- 225 (458)
..+.++|||+++++..++... ...+....|||+|+.+|... ++.|.+++..++...+.-..+.
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye 96 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred cceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence 347899999999886444332 56788999999999999885 5689999987775443322210
Q ss_pred ---cccEEEEEe--CCCeEEEEeCC-C-----------------------------------cEEEEEccCCCee-EEEE
Q 012679 226 ---RSRVGSLAW--NNHILTTGGMD-G-----------------------------------LIINNDVRVRDHI-VETY 263 (458)
Q Consensus 226 ---~~~v~~l~~--~~~~l~sg~~d-g-----------------------------------~i~vwd~~~~~~~-~~~~ 263 (458)
-..-..+-| +++.|+....| . .+.++|+.++... +...
T Consensus 97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~ 176 (353)
T PF00930_consen 97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP 176 (353)
T ss_dssp HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---
T ss_pred ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec
Confidence 011233445 34444443221 1 2334555444321 1111
Q ss_pred ---cccccceEeEEEcCCCCEEEEE--ECCC---cEEEEeCCCCCCCCcceeeeeecccccc---eeEEEec-CCCCcEE
Q 012679 264 ---RGHNQEVCGLKWSASGQQLASG--GNDN---LLHIWDRSMASSNSVTQWLHRLEEHTSA---VKAIAWC-PFQSNLL 331 (458)
Q Consensus 264 ---~~h~~~v~~l~~spd~~~l~sg--~~dg---~i~iwd~~~~~~~~~~~~~~~~~~h~~~---v~~l~~~-p~~~~ll 331 (458)
..-...+..+.|.++++.|+.. ..+. .+.+.|..++.... +.. ....+. -....|. +++..++
T Consensus 177 ~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~----~~~-e~~~~Wv~~~~~~~~~~~~~~~~l 251 (353)
T PF00930_consen 177 NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV----VLE-ETSDGWVDVYDPPHFLGPDGNEFL 251 (353)
T ss_dssp HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE----EEE-EESSSSSSSSSEEEE-TTTSSEEE
T ss_pred cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE----EEE-ecCCcceeeecccccccCCCCEEE
Confidence 1234567889999998844333 3332 46667776654411 111 111222 2345554 6666666
Q ss_pred EEeCCCCCC--eEEEEECCCCCeeEEEeCCCCeEE-EEEcCCCCeEEEEecC-C--CCcEEEEeCCCceeeEEEeCCCCc
Q 012679 332 ATGGGGGDR--CIKFWNTHTGACLNSVDTGSQVCA-LLWNKNERELLSSHGF-T--QNQLTLWKYPSMVKMAELSGHTSR 405 (458)
Q Consensus 332 ~s~~g~~d~--~i~lwd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~g~-~--d~~i~iwd~~~~~~~~~~~~h~~~ 405 (458)
.... .|| .|.+++...+.........-.|.. +.|+++++.++..+.. . ...|..-++..+..+..+......
T Consensus 252 ~~s~--~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~ 329 (353)
T PF00930_consen 252 WISE--RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD 329 (353)
T ss_dssp EEEE--TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST
T ss_pred EEEE--cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC
Confidence 6654 555 466667666664433334455644 7788888877655332 1 234555566623444556544433
Q ss_pred EEEEEEcCCCCEEEEEe
Q 012679 406 VLFMAQSPDGCTVASAA 422 (458)
Q Consensus 406 V~~l~~spdg~~l~s~s 422 (458)
-..+.|||+|++++-..
T Consensus 330 ~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 330 HYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TEEEEE-TTSSEEEEEE
T ss_pred ceEEEECCCCCEEEEEE
Confidence 36899999999887544
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.36 E-value=0.00082 Score=67.88 Aligned_cols=237 Identities=12% Similarity=0.129 Sum_probs=138.4
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEe---------cCCeEEEEeCCCceeeEE
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGL---------NNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~---------~dg~v~iwd~~~~~~~~~ 220 (458)
+.+++++.++.|+-+|.++|+..-......+...-..+.-+| .+..+++++ .+|.|..+|..+++.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 678888889999999999998733333322210001122222 234566664 367899999999998887
Q ss_pred ecCCCcc-------------------cE-EEEEe--CCCeEEEEeCCC------------------cEEEEEccCCCeeE
Q 012679 221 LRGGHRS-------------------RV-GSLAW--NNHILTTGGMDG------------------LIINNDVRVRDHIV 260 (458)
Q Consensus 221 ~~~~~~~-------------------~v-~~l~~--~~~~l~sg~~dg------------------~i~vwd~~~~~~~~ 260 (458)
+...... .+ ...+. .+..++.++.++ .|.-.|..+++..-
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 7642110 01 01222 246777777665 68889998887643
Q ss_pred EEEcc-ccc---ce-EeEEEc----CCCC---EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679 261 ETYRG-HNQ---EV-CGLKWS----ASGQ---QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS 328 (458)
Q Consensus 261 ~~~~~-h~~---~v-~~l~~s----pd~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 328 (458)
..-.. |.. .. ....+. -++. .++.++.+|.+...|..+++. +-..... ...++..| .
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~------~W~~~~~---~~~~~~~~--~ 339 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL------ISARPEV---EQPMAYDP--G 339 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE------eeEeEee---ccccccCC--c
Confidence 32212 211 00 000111 1333 577888899999999999876 2222110 11233344 2
Q ss_pred cEEEEeC---------------CCCCCeEEEEECCCCCeeEEEeCC---------CCeEEEEEcCCCCeEEEEecCCCCc
Q 012679 329 NLLATGG---------------GGGDRCIKFWNTHTGACLNSVDTG---------SQVCALLWNKNERELLSSHGFTQNQ 384 (458)
Q Consensus 329 ~ll~s~~---------------g~~d~~i~lwd~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~g~~d~~ 384 (458)
.+++... ...++.+.-.|..+|+.+...... .....-...-.+..+++ |..+|.
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~--g~~dG~ 417 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA--GAADGY 417 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE--ECCCCe
Confidence 2322110 124678999999999988887654 11111111124456666 558999
Q ss_pred EEEEeCCCceeeEEEeC
Q 012679 385 LTLWKYPSMVKMAELSG 401 (458)
Q Consensus 385 i~iwd~~~~~~~~~~~~ 401 (458)
|+.+|..+++.+.+++-
T Consensus 418 l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 418 FRAFDATTGKELWKFRT 434 (488)
T ss_pred EEEEECCCCceeeEEEC
Confidence 99999999999988764
No 334
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=3.7e-06 Score=78.67 Aligned_cols=208 Identities=15% Similarity=0.099 Sum_probs=146.6
Q ss_pred CcccEEEEEeC-CCeEEEEeCCCcEEEEEccC--CCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCC
Q 012679 225 HRSRVGSLAWN-NHILTTGGMDGLIINNDVRV--RDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DNLLHIWDRSMAS 300 (458)
Q Consensus 225 ~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~ 300 (458)
|...|+.+... .+++.+++.||.++.|--.. +-..+..+..|...|.+++.+.++.++.+++. |..++++|+.+..
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 77777777664 68999999999999997643 22345566789999999999999999999888 9999999988765
Q ss_pred CCCcceeeeeecccccceeEEEecCC-CCcEEEEeCCCCCCeEEEEECCCCCeeEEE---eCCCCeEEEEEcCCCCeEEE
Q 012679 301 SNSVTQWLHRLEEHTSAVKAIAWCPF-QSNLLATGGGGGDRCIKFWNTHTGACLNSV---DTGSQVCALLWNKNERELLS 376 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~ 376 (458)
... ...+..-.+.+.. ..++. --.+++.+ -..++.|.++|-....+...+ -+.++|..+.+++.+..+++
T Consensus 88 min----miKL~~lPg~a~w-v~skGd~~s~IAVs-~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 88 MIN----MIKLVDLPGFAEW-VTSKGDKISLIAVS-LFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred hhh----hcccccCCCceEE-ecCCCCeeeeEEee-cccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 421 1122222222221 12221 11233333 237889999998765533222 34678999999999999988
Q ss_pred EecCCCCcEEEEeCCC------ceeeEE---------EeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 377 SHGFTQNQLTLWKYPS------MVKMAE---------LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 377 ~~g~~d~~i~iwd~~~------~~~~~~---------~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
+...|.|.-|..+. .+.... +........++.|+|+|..+.+-+.|..|+++++.+++.+..
T Consensus 162 --iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 162 --IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred --ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 55788999998862 111111 222345678999999999999999999999999998875543
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.32 E-value=0.00024 Score=71.21 Aligned_cols=216 Identities=11% Similarity=0.060 Sum_probs=128.0
Q ss_pred EcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCC----cEEEEEccCCCeeEEEEcc
Q 012679 191 WAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDG----LIINNDVRVRDHIVETYRG 265 (458)
Q Consensus 191 ~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg----~i~vwd~~~~~~~~~~~~~ 265 (458)
+.|||+.+... -..+.+.+.|.++.+...++..+.......+..++.++++.+.+. ++..-+...... ...+.-
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCce-EEEEch
Confidence 34455544322 234567777888877777766433333444444677777765322 222222221111 111110
Q ss_pred cccceEeEEEcCCCCEEEEEECCCcEEEEeCCC----CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe
Q 012679 266 HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM----ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341 (458)
Q Consensus 266 h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~ 341 (458)
..+ -++.++|++... .++.|.+.|..+ ... +..+-.-......++++||+.++++++. .+.+
T Consensus 279 --~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~------v~~yIPVGKsPHGV~vSPDGkylyVank--lS~t 344 (635)
T PRK02888 279 --ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA------LTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPT 344 (635)
T ss_pred --HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcc------eEEEEECCCCccceEECCCCCEEEEeCC--CCCc
Confidence 000 133457887766 367899999887 221 2222223455678999999999999876 8999
Q ss_pred EEEEECCCCC------------eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC----------ceeeEEE
Q 012679 342 IKFWNTHTGA------------CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS----------MVKMAEL 399 (458)
Q Consensus 342 i~lwd~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~----------~~~~~~~ 399 (458)
+.+.|+.+.+ .+..+..+-.....+|.++|....+ -+-|.+|..|++.. ...+..+
T Consensus 345 VSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ayts--lf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~ 422 (635)
T PRK02888 345 VTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTT--LFLDSQIVKWNIEAAIRAYKGEKVDPIVQKL 422 (635)
T ss_pred EEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEe--EeecceeEEEehHHHHHHhccccCCcceecc
Confidence 9999998865 3555555666778889999875554 45799999999875 2334444
Q ss_pred eCCCCcEE-----EEEEcCCCCEEEEEeC
Q 012679 400 SGHTSRVL-----FMAQSPDGCTVASAAA 423 (458)
Q Consensus 400 ~~h~~~V~-----~l~~spdg~~l~s~s~ 423 (458)
.-|-.+-. .=.-.|||++|++...
T Consensus 423 dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 423 DVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred cCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 43433221 1123578888887643
No 336
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.32 E-value=0.0019 Score=56.88 Aligned_cols=140 Identities=9% Similarity=0.045 Sum_probs=89.7
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccE-E
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRV-G 230 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v-~ 230 (458)
..++.++-.+.+.--|..+|+..-...+ ...|.+-+.- -|++++.|...|.+++.+.++|.+...+.....-.+ .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 4566677778888889888886322222 2233333222 477899999999999999999988877763222222 2
Q ss_pred EEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679 231 SLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 231 ~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~ 296 (458)
.+++++.++..|+.|++.+..|.++...+ ...+...+...+-+..|-...|..+...|.|.--..
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cV-ykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCV-YKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceE-EecccCCceeccceecCCCceEEEEeccceEEEEcc
Confidence 35678999999999999999999987753 334433333334445553333444444455444333
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.31 E-value=0.00036 Score=68.64 Aligned_cols=220 Identities=13% Similarity=0.166 Sum_probs=118.6
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEE-EccCC
Q 012679 179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINN-DVRVR 256 (458)
Q Consensus 179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vw-d~~~~ 256 (458)
+.........+.++|+|+++++ ..+|.-.|+.....+.... +....+.|. .+.+++-...+.|.++ ++...
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~------G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF------GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE------EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc------CceeEEEEecCccEEEEECCCeEEEEEcCccc
Confidence 3334456889999999999998 5677888888444433221 233456773 4677787778889996 44322
Q ss_pred CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679 257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG 336 (458)
Q Consensus 257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g 336 (458)
. ...+.. ...+..+-. |.+|+..+.+ .|.+||+.++.. +.++.. .+|+.+.|++++..+.+.+
T Consensus 101 ~--~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~------i~~i~v--~~vk~V~Ws~~g~~val~t-- 163 (443)
T PF04053_consen 101 V--VKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKL------IRRIDV--SAVKYVIWSDDGELVALVT-- 163 (443)
T ss_dssp T--T------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E------EEEESS---E-EEEEE-TTSSEEEEE---
T ss_pred c--ceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcce------eeEEec--CCCcEEEEECCCCEEEEEe--
Confidence 2 112211 112333332 8888777665 899999998876 666653 2489999999877666663
Q ss_pred CCCCeEEEEECCCC-----------CeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--eeEEEeCC
Q 012679 337 GGDRCIKFWNTHTG-----------ACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--KMAELSGH 402 (458)
Q Consensus 337 ~~d~~i~lwd~~~~-----------~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--~~~~~~~h 402 (458)
+..+.+++.... ..+..+.. ...|.+.+|..+ .++-++ .+.|+- +..|+ .+..+
T Consensus 164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT---~~~lkY--l~~Ge~~~i~~l--- 231 (443)
T PF04053_consen 164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT---SNHLKY--LVNGETGIIAHL--- 231 (443)
T ss_dssp --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE----TTEEEE--EETTEEEEEEE----
T ss_pred --CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc---CCeEEE--EEcCCcceEEEc---
Confidence 457777775443 12333333 678999999877 333322 235555 33332 23333
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679 403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~ 434 (458)
..++.=+.+.|+.+.+.....|+.|..+.+..
T Consensus 232 d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 232 DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 34566677788777888889999999888754
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00024 Score=72.03 Aligned_cols=206 Identities=13% Similarity=0.150 Sum_probs=134.1
Q ss_pred ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCC-EEEEEEcCCCCEEEEEecCC-----eEEEEeCCCc-
Q 012679 143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGP-VTSVNWAPDGRHIAIGLNNC-----QVQLWDSTAN- 215 (458)
Q Consensus 143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~-V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~~- 215 (458)
-+.+++-+...++.+..+|.|.+.+-.- ..+..+..+... |..+....+..+|++.+.|+ .|+|||++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4666666668899999999999997432 223455555555 55444444446777766654 5899998532
Q ss_pred -----eee---EEec--C-CCcccEEEEEeC--CCeEEEEeCCCcEEEEEcc---CCCeeEEEEcccccceEeEEEcCCC
Q 012679 216 -----RQL---RTLR--G-GHRSRVGSLAWN--NHILTTGGMDGLIINNDVR---VRDHIVETYRGHNQEVCGLKWSASG 279 (458)
Q Consensus 216 -----~~~---~~~~--~-~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~---~~~~~~~~~~~h~~~v~~l~~spd~ 279 (458)
.++ +.+. . ....++.+++.+ -..+++|-.+|.|..+.-. ..............+|+++.+..++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 233 2222 1 134567777774 4789999999999988422 1111122222346789999999998
Q ss_pred CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC
Q 012679 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG 359 (458)
Q Consensus 280 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~ 359 (458)
+.++-+..-..|.+|.+....+ ....+..|...+.|.++++....++++ .+..+.+|+.....+...+..+
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~p-----~~~~ld~~G~~lnCss~~~~t~qfIca----~~e~l~fY~sd~~~~cfaf~~g 254 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRTP-----SLKVLDNNGISLNCSSFSDGTYQFICA----GSEFLYFYDSDGRGPCFAFEVG 254 (933)
T ss_pred ceeEEEEecceeEEEEecCCCc-----ceeeeccCCccceeeecCCCCccEEEe----cCceEEEEcCCCcceeeeecCC
Confidence 8743334446899999884442 145577889999999999854445554 3568999998876666666543
Q ss_pred C
Q 012679 360 S 360 (458)
Q Consensus 360 ~ 360 (458)
.
T Consensus 255 ~ 255 (933)
T KOG2114|consen 255 E 255 (933)
T ss_pred C
Confidence 3
No 339
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.27 E-value=0.00028 Score=74.19 Aligned_cols=207 Identities=12% Similarity=0.155 Sum_probs=132.6
Q ss_pred cccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC----CCC
Q 012679 226 RSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR----SMA 299 (458)
Q Consensus 226 ~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~----~~~ 299 (458)
...|.++.| ++..++.+..+|.|.+.|..+... .....-...|.+++|+||+..++..+.++++.+-+- -..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 368899998 578899999999999998876653 333334678999999999999999999888876542 111
Q ss_pred CCC----------Cccee---eeeeccc---------------------ccceeEEEecCCCCcEEEEeC--CCCCCeEE
Q 012679 300 SSN----------SVTQW---LHRLEEH---------------------TSAVKAIAWCPFQSNLLATGG--GGGDRCIK 343 (458)
Q Consensus 300 ~~~----------~~~~~---~~~~~~h---------------------~~~v~~l~~~p~~~~ll~s~~--g~~d~~i~ 343 (458)
+.. ....| ...+.+. ...=+.|.|--||.++.++.- .+..+.|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 100 00000 0111110 111235889888766655331 12238999
Q ss_pred EEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEEEec-CCCCcEEEEeCCCce---eeEEEeCCCCcEEEEEEcCCCCEE
Q 012679 344 FWNTHTGACLNSV-DTGSQVCALLWNKNERELLSSHG-FTQNQLTLWKYPSMV---KMAELSGHTSRVLFMAQSPDGCTV 418 (458)
Q Consensus 344 lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g-~~d~~i~iwd~~~~~---~~~~~~~h~~~V~~l~~spdg~~l 418 (458)
+||.. |..-.+- .....-.+++|-|.|..+++... .+++.|.+|.-+..+ ....+......|..++|+.++..|
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence 99987 4432222 22344678999999998887643 245568888754432 222222233448999999999999
Q ss_pred EE---EeCCCcEEEEecCCC
Q 012679 419 AS---AAADETLRFWNVFGA 435 (458)
Q Consensus 419 ~s---~s~Dg~i~iW~~~~~ 435 (458)
++ ......|++|-+.+-
T Consensus 305 Av~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeeecccccceEEEEEecCe
Confidence 87 444455999988764
No 340
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.23 E-value=0.0053 Score=58.28 Aligned_cols=281 Identities=15% Similarity=0.144 Sum_probs=136.6
Q ss_pred cccceeecc--CCCeEEEEc---CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679 142 YYLNLLDWG--SSNVLAIAL---GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR 216 (458)
Q Consensus 142 ~~~~~~~~~--~~~~la~~~---d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~ 216 (458)
+|+..=.|. ++.++.++. ...+++.|+.+++..++....+.. .....++|+++.++.......|.-.|+.+.+
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~--~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN--TFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC--ccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 344444444 455666555 358999999999987776644322 2245667888888766666689999999987
Q ss_pred eeEEecCCCcccEEEEEe----CCCeEEEEe---C-------------------CCcEEEEEccCCCeeEEEEcccccce
Q 012679 217 QLRTLRGGHRSRVGSLAW----NNHILTTGG---M-------------------DGLIINNDVRVRDHIVETYRGHNQEV 270 (458)
Q Consensus 217 ~~~~~~~~~~~~v~~l~~----~~~~l~sg~---~-------------------dg~i~vwd~~~~~~~~~~~~~h~~~v 270 (458)
....+.. ....+....| ++..++-.- . ...|.-.|+.+++. +.+..-...+
T Consensus 114 ~~~vy~~-p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~--~~v~~~~~wl 190 (386)
T PF14583_consen 114 ERVVYEV-PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER--KVVFEDTDWL 190 (386)
T ss_dssp EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E--EEEEEESS-E
T ss_pred EEEEEEC-CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce--eEEEecCccc
Confidence 6555543 4445544555 233332211 0 12345556665542 3333345667
Q ss_pred EeEEEcCCCC-EEEEEEC---CC-cEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEecCCCCcEEEEeC--CCCCCe
Q 012679 271 CGLKWSASGQ-QLASGGN---DN-LLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGG--GGGDRC 341 (458)
Q Consensus 271 ~~l~~spd~~-~l~sg~~---dg-~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~--g~~d~~ 341 (458)
..+.|+|... +|+-|-+ +. .-+||-++..... ...+..+ ...+..=-|.|+|..+...+. |..+..
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-----~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~ 265 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-----VKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW 265 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-----ceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence 7889999554 4444432 32 2367776654432 2222222 234455568999988877542 335678
Q ss_pred EEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC--------------CCcEEEEeCCCceeeEEE--------
Q 012679 342 IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT--------------QNQLTLWKYPSMVKMAEL-------- 399 (458)
Q Consensus 342 i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~--------------d~~i~iwd~~~~~~~~~~-------- 399 (458)
|.-+|..+++........ ....+.-+++++.++-=.+.. +-.|++++...+......
T Consensus 266 i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v 344 (386)
T PF14583_consen 266 IAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKV 344 (386)
T ss_dssp EEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------
T ss_pred EEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCccee
Confidence 888999998765433332 344566677887776532211 125667888766543211
Q ss_pred -eCCCC-cEEEEEEcCCCCEEEEE-eCCCcEEEEecC
Q 012679 400 -SGHTS-RVLFMAQSPDGCTVASA-AADETLRFWNVF 433 (458)
Q Consensus 400 -~~h~~-~V~~l~~spdg~~l~s~-s~Dg~i~iW~~~ 433 (458)
.++.. .=-...|+|||++|+-. ...|...||-+.
T Consensus 345 ~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 345 LDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 11111 11457899999987654 457887777654
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.23 E-value=0.0031 Score=58.64 Aligned_cols=227 Identities=11% Similarity=0.128 Sum_probs=132.8
Q ss_pred CCCeEEEEcCCEEEEEECC-CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe--------
Q 012679 151 SSNVLAIALGSTVYLWDAS-DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL-------- 221 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~-~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~-------- 221 (458)
.+.++.|..+| |++++.. ......+.. ...|..+...++-+.|++-+ ||.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 45677776776 9999983 333322222 33499999999877766654 599999998765433311
Q ss_pred -----cCCCcccEEEEE----eCCCeEEEEeCCCcEEEEEccCCC----eeEEEEcccccceEeEEEcCCCCEEEEEECC
Q 012679 222 -----RGGHRSRVGSLA----WNNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQEVCGLKWSASGQQLASGGND 288 (458)
Q Consensus 222 -----~~~~~~~v~~l~----~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d 288 (458)
.......+..++ ..+...+.......|.+|...... ...+.+. -...+.+++|. ++.++.|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 111334455555 133444444445588888886531 2223332 34778889998 6677777654
Q ss_pred CcEEEEeCCCCCCCCcceeeeeecc----------cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE--EE
Q 012679 289 NLLHIWDRSMASSNSVTQWLHRLEE----------HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN--SV 356 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~--~~ 356 (458)
...+.|+.++.... +..... ...++..+.... +. +|++ .|..-.+.|. .|+..+ .+
T Consensus 158 -~f~~idl~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e-~Ll~----~~~~g~fv~~-~G~~~r~~~i 225 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSE----LLDPSDSSSSFKSRNSSSKPLGIFQLSD-NE-FLLC----YDNIGVFVNK-NGEPSRKSTI 225 (275)
T ss_pred -ceEEEecCCCCceE----EeCccCCcchhhhcccCCCceEEEEeCC-ce-EEEE----ecceEEEEcC-CCCcCcccEE
Confidence 58888988655421 111111 122333444433 33 3333 3445555554 444433 44
Q ss_pred eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC
Q 012679 357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT 403 (458)
Q Consensus 357 ~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~ 403 (458)
.-...+.++++ ...++++. .++.|.||++.+++.++++....
T Consensus 226 ~W~~~p~~~~~--~~pyli~~---~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 226 QWSSAPQSVAY--SSPYLIAF---SSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EcCCchhEEEE--ECCEEEEE---CCCEEEEEECcCCcEEEEEECCC
Confidence 44556667766 34577764 35779999999999998887543
No 342
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.20 E-value=0.00015 Score=70.84 Aligned_cols=135 Identities=18% Similarity=0.179 Sum_probs=93.5
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEE----ecCCe----EEEEeCCCcee--eEEecCCCcccEE
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIG----LNNCQ----VQLWDSTANRQ--LRTLRGGHRSRVG 230 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g----~~dg~----v~iwd~~~~~~--~~~~~~~~~~~v~ 230 (458)
.+.++.+..++.+.+..+.... ...++.|+. +...+.+. +.+|. -.+|++..++. +........+.|.
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~-dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~ 263 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTEN-DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI 263 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecC-CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence 5666666666666565555433 346788886 34444332 33443 35677665532 2222234778899
Q ss_pred EEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679 231 SLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 231 ~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
|.+++ ...|+.|+.||.|.+||...+.. .+....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEecCcccceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99996 58999999999999999876532 233345567889999999999999999999999976543
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.19 E-value=0.00093 Score=65.80 Aligned_cols=225 Identities=14% Similarity=0.174 Sum_probs=118.1
Q ss_pred ccccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 141 DYYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 141 d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
+++...+.++| ++.++++.+|.-.|+....... .. .+.-....|.+.++ +|+-..++.|.|+.--..+...
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~--k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN--KA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE--EE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc--cc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence 45567788888 6799999999999998443322 11 12245688998555 6666668899997433444434
Q ss_pred EecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 012679 220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA 299 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~ 299 (458)
.+.. ...+..|-. |.+|...+.+ .|.+||+.++.. +..+.. ..|..+.|++++.++|..+.+ .+.|++....
T Consensus 104 ~i~~--~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~~-i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 104 SIKL--PFSVEKIFG-GNLLGVKSSD-FICFYDWETGKL-IRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp ------SS-EEEEE--SSSEEEEETT-EEEEE-TTT--E-EEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred EEcC--CcccceEEc-CcEEEEECCC-CEEEEEhhHcce-eeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 4443 223333333 7777777655 899999997764 555543 248999999999999998865 6788775443
Q ss_pred -----CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeE
Q 012679 300 -----SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL 374 (458)
Q Consensus 300 -----~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 374 (458)
...........+..-...|.+.+|..+ -++.+. .. .|+. +..|+.-.......++.-+.+.+..+.+
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT---~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~l 247 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT---SN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRL 247 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE----TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEE
T ss_pred hcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc---CC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEE
Confidence 000000012333333678999999874 555553 23 6766 4445443333335566666677766666
Q ss_pred EEEecCCCCcEEEEeCC
Q 012679 375 LSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~ 391 (458)
+.. ..++.+..+.++
T Consensus 248 y~~--Dr~~~v~~~~ld 262 (443)
T PF04053_consen 248 YLI--DRDGNVISYELD 262 (443)
T ss_dssp EEE---TT--EEEEE--
T ss_pred EEE--ECCCCEEEEEEC
Confidence 663 256666666543
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.14 E-value=0.0073 Score=59.80 Aligned_cols=247 Identities=11% Similarity=0.081 Sum_probs=131.5
Q ss_pred EEEEEEcCCCCEEEEEe-cCC----eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC-----------Cc
Q 012679 186 VTSVNWAPDGRHIAIGL-NNC----QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD-----------GL 247 (458)
Q Consensus 186 V~~v~~s~~g~~la~g~-~dg----~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d-----------g~ 247 (458)
+....++|+|++||.+- ..| .|+++|+.+++.+..... ......+.| ++..|+....+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34678899999999874 334 599999999987764321 122234899 34555554432 23
Q ss_pred EEEEEccCCCee-EEEEcccccc--eEeEEEcCCCCEEEEEEC---C-CcEEEEeCCCCC-CCCcceeeeeeccccccee
Q 012679 248 IINNDVRVRDHI-VETYRGHNQE--VCGLKWSASGQQLASGGN---D-NLLHIWDRSMAS-SNSVTQWLHRLEEHTSAVK 319 (458)
Q Consensus 248 i~vwd~~~~~~~-~~~~~~h~~~--v~~l~~spd~~~l~sg~~---d-g~i~iwd~~~~~-~~~~~~~~~~~~~h~~~v~ 319 (458)
|+.|.+.+.... ...+...... ...+..++|+++|+.... + ..+.+.|+.... .... ...+......+.
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~---~~~l~~~~~~~~ 280 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK---PKLLSPREDGVE 280 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S---EEEEEESSSS-E
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC---cEEEeCCCCceE
Confidence 788888765432 2334333322 568889999999875443 2 457888887641 1111 233333333333
Q ss_pred EEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe---e-EEEeCCCCeEEEEEcCCCCeEEEEec-CCCCcEEEEeCCCce
Q 012679 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---L-NSVDTGSQVCALLWNKNERELLSSHG-FTQNQLTLWKYPSMV 394 (458)
Q Consensus 320 ~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~---~-~~~~~~~~v~~~~~s~~~~~l~~~~g-~~d~~i~iwd~~~~~ 394 (458)
...-+..+..++.+..+...+.|.-.++.+... . ..+.....+.-..+...+..|+...- .....|.++++..+.
T Consensus 281 ~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 281 YYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred EEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence 322222334455555455667888888887763 2 22333333333334445555555321 123368899998334
Q ss_pred eeEEEeC-CCCcEEEEEEcCCCCEEE-EEeC---CCcEEEEecCCCCc
Q 012679 395 KMAELSG-HTSRVLFMAQSPDGCTVA-SAAA---DETLRFWNVFGAPQ 437 (458)
Q Consensus 395 ~~~~~~~-h~~~V~~l~~spdg~~l~-s~s~---Dg~i~iW~~~~~~~ 437 (458)
....+.. -.+.|..+...+++..+. +.+. -+++.-||+.+++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4333332 334566666666655443 3222 25677788776654
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.12 E-value=0.0094 Score=58.64 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=107.0
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec------CCCcccEEEEEeC
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR------GGHRSRVGSLAWN 235 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~------~~~~~~v~~l~~~ 235 (458)
.|.||+... +......+.. +.|.++.|+.+. .|++-..||.+++||+.... ...+. .-....+....+.
T Consensus 62 ~I~iys~sG-~ll~~i~w~~--~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSG-KLLSSIPWDS--GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCC-CEeEEEEECC--CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 599998754 4433344443 789999999865 56677799999999986333 11111 0012223333332
Q ss_pred CCeEEEEeCCCcEEEEEccCCCeeEEEEc---c-----cccce-E-eEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679 236 NHILTTGGMDGLIINNDVRVRDHIVETYR---G-----HNQEV-C-GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT 305 (458)
Q Consensus 236 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---~-----h~~~v-~-~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~ 305 (458)
++-++.-..++.+.+..--........+. . |.... . -..++.+....+....++.+.+.+-....
T Consensus 137 ~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~----- 211 (410)
T PF04841_consen 137 KNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK----- 211 (410)
T ss_pred CCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc-----
Confidence 12233334445554432211111111111 0 00000 0 12344455555555555666644422210
Q ss_pred eeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcCCCCeEEE
Q 012679 306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLS 376 (458)
Q Consensus 306 ~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~ 376 (458)
.+ ...+++..++.||+++.+.... .+|.+.+....-.+.+..++.+ .....+.|.-+...++.
T Consensus 212 ----~i-~~~~~i~~iavSpng~~iAl~t---~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 212 ----QI-DSDGPIIKIAVSPNGKFIALFT---DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLS 276 (410)
T ss_pred ----cc-cCCCCeEEEEECCCCCEEEEEE---CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEE
Confidence 11 1246799999999877665543 6789999887777777777765 66788888876544443
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.11 E-value=0.0018 Score=61.72 Aligned_cols=215 Identities=13% Similarity=0.110 Sum_probs=125.6
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEE---cCC----CCEEEEEec---------C-CeEEEEeCCCc-----eee
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNW---APD----GRHIAIGLN---------N-CQVQLWDSTAN-----RQL 218 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~---s~~----g~~la~g~~---------d-g~v~iwd~~~~-----~~~ 218 (458)
+.|++.|..+.+......+.. ...+++++. ..+ ..+|++|+. . |.|.++++... +..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 478999988888766666664 344665554 322 578888864 2 89999999884 222
Q ss_pred EEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCC-eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 219 ~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
........++|.+++--+..|+++. .+.|.+|++.... ............+.++... +++++.|.....+.++.++
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 2222226788999987554544444 4789999998777 3222222233356666654 6699999988888887554
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-------CC----eeEEEeCCCCeEEE-
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-------GA----CLNSVDTGSQVCAL- 365 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-------~~----~~~~~~~~~~v~~~- 365 (458)
.... ... ...-......+.++.+-+++. .++.+. .+|.+.++.... +. ....+..+..|+++
T Consensus 158 ~~~~--~l~-~va~d~~~~~v~~~~~l~d~~-~~i~~D--~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 231 (321)
T PF03178_consen 158 EENN--KLI-LVARDYQPRWVTAAEFLVDED-TIIVGD--KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR 231 (321)
T ss_dssp TTTE---EE-EEEEESS-BEEEEEEEE-SSS-EEEEEE--TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred ccCC--EEE-EEEecCCCccEEEEEEecCCc-EEEEEc--CCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence 4211 011 111123355688888886665 545444 899999987652 22 34455667888888
Q ss_pred --EEcC--CCCe------EEEEecCCCCcEEE
Q 012679 366 --LWNK--NERE------LLSSHGFTQNQLTL 387 (458)
Q Consensus 366 --~~s~--~~~~------l~~~~g~~d~~i~i 387 (458)
.+.| .+.. ++. ++.+|.|.+
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~--~T~~G~Ig~ 261 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILY--GTVDGSIGV 261 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEE--EETTS-EEE
T ss_pred EEEeeecCCCCcccccceEEE--EecCCEEEE
Confidence 4445 2222 444 336777763
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.10 E-value=0.011 Score=59.98 Aligned_cols=283 Identities=12% Similarity=0.108 Sum_probs=159.9
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCC-CCEE---E-------EEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDEN-GPVT---S-------VNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~-~~V~---~-------v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
.+.+++++.++.|+-.|..+|+. +.+..... ..+. + +++ .+..+++++.||.|.-.|..+|+.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~--lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKE--LWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCce--eeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 35677777788999999999987 44432111 1111 1 122 23567788899999999999999988
Q ss_pred EecCCCcc---cEEE-EEeCCCeEEEEe------CCCcEEEEEccCCCeeEEEEcccc----------------------
Q 012679 220 TLRGGHRS---RVGS-LAWNNHILTTGG------MDGLIINNDVRVRDHIVETYRGHN---------------------- 267 (458)
Q Consensus 220 ~~~~~~~~---~v~~-l~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~h~---------------------- 267 (458)
........ .+.+ -...+..++.+. .+|.|..+|.++++.+-.......
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 76531111 1111 111234455543 268899999988875432111100
Q ss_pred --------cce-EeEEEcCCCCEEEEEECC-----C-----------cEEEEeCCCCCCCCcceeeeeeccccc------
Q 012679 268 --------QEV-CGLKWSASGQQLASGGND-----N-----------LLHIWDRSMASSNSVTQWLHRLEEHTS------ 316 (458)
Q Consensus 268 --------~~v-~~l~~spd~~~l~sg~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~~~h~~------ 316 (458)
..+ ..+++.|...++..+... + .|.-.|+++++. ++..+...|..
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~----~W~~Q~~~~D~wD~d~~ 300 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI----KWHYQTTPHDEWDYDGV 300 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE----EEeeeCCCCCCccccCC
Confidence 011 134566666666655422 1 455566666654 23333333321
Q ss_pred -ceeEEEecCCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEE------------e--CCCC------------------
Q 012679 317 -AVKAIAWCPFQS--NLLATGGGGGDRCIKFWNTHTGACLNSV------------D--TGSQ------------------ 361 (458)
Q Consensus 317 -~v~~l~~~p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~------------~--~~~~------------------ 361 (458)
...-+....++. .+++.+. .+|.+.+.|-.+|+.+... . ...+
T Consensus 301 ~~p~l~d~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~ 378 (527)
T TIGR03075 301 NEMILFDLKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVG 378 (527)
T ss_pred CCcEEEEeccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeE
Confidence 111122223444 4666655 9999999999999986221 0 0000
Q ss_pred ----------eEEEEEcCCCCeEEEEecC-------------------------------CCCcEEEEeCCCceeeEEEe
Q 012679 362 ----------VCALLWNKNERELLSSHGF-------------------------------TQNQLTLWKYPSMVKMAELS 400 (458)
Q Consensus 362 ----------v~~~~~s~~~~~l~~~~g~-------------------------------~d~~i~iwd~~~~~~~~~~~ 400 (458)
-..++++|+...+++..+. .-+.|.-+|+.+++.+-...
T Consensus 379 ~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~ 458 (527)
T TIGR03075 379 VCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHK 458 (527)
T ss_pred ECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEec
Confidence 1125566666665543221 12457778888888777664
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679 401 GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444 (458)
Q Consensus 401 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~ 444 (458)
......-+. +.-.|..++.++.||.++.+|..+++++.+....
T Consensus 459 ~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 459 EDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 322111111 1124557777888999999999999998876543
No 348
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=0.0028 Score=55.82 Aligned_cols=122 Identities=12% Similarity=0.068 Sum_probs=85.3
Q ss_pred CCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeE
Q 012679 195 GRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL 273 (458)
Q Consensus 195 g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l 273 (458)
..+++.|+..+.+.-.|..+|+....-. -..++-+-+. -|++++.|+..|.+++.+..++..... +..-..--...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~-f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWN-FVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheee-eeehhhhccce
Confidence 4678889999999999999998877654 3344444333 477899999999999999999865332 22211111234
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325 (458)
Q Consensus 274 ~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 325 (458)
...+++.++..|+.|++.+..|.++... +.+.+...+...+-+..|
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~c------VykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGC------VYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccce------EEecccCCceeccceecC
Confidence 4567999999999999999999988776 555444333333344445
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.03 E-value=0.01 Score=58.39 Aligned_cols=198 Identities=11% Similarity=0.078 Sum_probs=102.9
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCee-----EEEEcccccceEeEEEcCCC
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHI-----VETYRGHNQEVCGLKWSASG 279 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~-----~~~~~~h~~~v~~l~~spd~ 279 (458)
.|.||+. .|+.+..+.-.+ +.+.++.|+ ...|++-..||.+++||+...... +....-....+....+..+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4888874 455666665424 899999995 678889999999999998633200 00001111122222333355
Q ss_pred CEEEEEECCCcEEEEeCCCCCCC-Cc--cee--eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE
Q 012679 280 QQLASGGNDNLLHIWDRSMASSN-SV--TQW--LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN 354 (458)
Q Consensus 280 ~~l~sg~~dg~i~iwd~~~~~~~-~~--~~~--~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~ 354 (458)
-.++ ..++.+.+.+-...... .. ..+ ......+........++.+....+... .++.+.+.+....+
T Consensus 140 ivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---~g~~i~~i~~~~~~--- 211 (410)
T PF04841_consen 140 IVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---NGETIYIIDENSFK--- 211 (410)
T ss_pred EEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---cCCEEEEEEccccc---
Confidence 3333 34455544432221100 00 000 000000111000022333323222222 34455544433221
Q ss_pred EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-CCcEEEEEEcCCC
Q 012679 355 SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-TSRVLFMAQSPDG 415 (458)
Q Consensus 355 ~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg 415 (458)
.+...+++..++.||++++++..+ .+|.+.|.+..-.+.+.++... ......|.|.-+.
T Consensus 212 ~i~~~~~i~~iavSpng~~iAl~t--~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 212 QIDSDGPIIKIAVSPNGKFIALFT--DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred cccCCCCeEEEEECCCCCEEEEEE--CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 134457899999999999998865 6789989887666666666543 3456677776554
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.016 Score=56.48 Aligned_cols=263 Identities=14% Similarity=0.136 Sum_probs=167.3
Q ss_pred EEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC-eEEEEeCCCceeeEEecCCCcccEEEEEe--CC-Ce
Q 012679 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC-QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NN-HI 238 (458)
Q Consensus 163 v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg-~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~-~~ 238 (458)
+.+++..+........+. . ....+...+++..+.+....+ .+.+.+............ -...-..++. .+ ..
T Consensus 13 ~~v~~~~~~~~~~~~~~~--~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~-g~~~p~~i~v~~~~~~v 88 (381)
T COG3391 13 VSVINTGTNKVTAAISLG--R-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSV-GGVYPAGVAVNPAGNKV 88 (381)
T ss_pred eEEEeecccEEEEEeecC--C-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccC-CCccccceeeCCCCCeE
Confidence 566665555442222222 2 456778888886555543222 455555542222222221 1122234444 33 45
Q ss_pred EEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC---CCcEEEEeCCCCCCCCcceeeeeecccc
Q 012679 239 LTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN---DNLLHIWDRSMASSNSVTQWLHRLEEHT 315 (458)
Q Consensus 239 l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~ 315 (458)
.+....+..|.+.|............+. ....++++++++.+..+.. ++++.+.|..+... ......-.
T Consensus 89 yv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~------~~~~~vG~ 160 (381)
T COG3391 89 YVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV------TATIPVGN 160 (381)
T ss_pred EEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE------EEEEecCC
Confidence 6666667899999976655432333333 5678999999988766655 68888888777655 33332222
Q ss_pred cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE-----EEeCCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEe
Q 012679 316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN-----SVDTGSQVCALLWNKNERELLSSHGFT-QNQLTLWK 389 (458)
Q Consensus 316 ~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd 389 (458)
.+ ..+++.|++..++++.. .++.|.+.|..+..... .+........+.+++++.++.++.... ++.+...|
T Consensus 161 ~P-~~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id 237 (381)
T COG3391 161 TP-TGVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID 237 (381)
T ss_pred Cc-ceEEECCCCCeEEEEec--CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence 33 88999999998888765 78999999977766653 233455678899999999887765433 36899999
Q ss_pred CCCceeeEE-EeCCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEecCCCCcccc
Q 012679 390 YPSMVKMAE-LSGHTSRVLFMAQSPDGCTVASAAAD-ETLRFWNVFGAPQVIS 440 (458)
Q Consensus 390 ~~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~D-g~i~iW~~~~~~~~~~ 440 (458)
..++..... +..-......+..+|+|..+.+.... +.+.+-|.........
T Consensus 238 ~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 238 TATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred CCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 988877665 22111145678999999998877544 7888888776555443
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.022 Score=55.53 Aligned_cols=225 Identities=13% Similarity=0.100 Sum_probs=150.3
Q ss_pred CCEEEEEEcCCCCEEEE-EecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeC---CCcEEEEEccCCCee
Q 012679 184 GPVTSVNWAPDGRHIAI-GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGM---DGLIINNDVRVRDHI 259 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~-g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~---dg~i~vwd~~~~~~~ 259 (458)
..-..++.++.+..+.+ ...++.|.+.|..+.+.......+....-..+.++++.+..+.. ++.+.+.|..+....
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 34567888888885544 44557999999888888887775453333333335655555544 688889988877654
Q ss_pred EEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC
Q 012679 260 VETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG 338 (458)
Q Consensus 260 ~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~ 338 (458)
.. ...-..+ ..++++|+|+.+..+. .++.|.+.|........ ....... .-...-..+++.|++..+.++..++.
T Consensus 154 ~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 154 AT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccccc-ccCCCCceEEECCCCCEEEEEeccCC
Confidence 44 3322234 8899999999766555 78999999966654311 0000011 11223457899999998888876445
Q ss_pred CCeEEEEECCCCCeeEE-EeCCC-CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC---cEEEEEEcC
Q 012679 339 DRCIKFWNTHTGACLNS-VDTGS-QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS---RVLFMAQSP 413 (458)
Q Consensus 339 d~~i~lwd~~~~~~~~~-~~~~~-~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~---~V~~l~~sp 413 (458)
++.+...|..++..... ..... ....+..+|+++.+.+... ..+.+.+.|..+............ .+..+++.+
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec-CCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 57999999999887776 22222 6788999999999998753 368899999988877776543332 244555544
No 352
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.91 E-value=0.0036 Score=56.06 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=36.2
Q ss_pred CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679 359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH 402 (458)
Q Consensus 359 ~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h 402 (458)
...|..+..+|+|..|++.+ .+|.|.+|++++........-+
T Consensus 229 ~d~i~kmSlSPdg~~La~ih--~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIH--FSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCceEEEEECCCCCEEEEEE--cCCeEEEEecCcchhhcccchh
Confidence 45699999999999999987 7999999999998887766533
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00019 Score=71.32 Aligned_cols=117 Identities=12% Similarity=0.186 Sum_probs=89.0
Q ss_pred EEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679 229 VGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL 308 (458)
Q Consensus 229 v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 308 (458)
.+|++-+.++++.|+.-|.+++|+-..+........+..+.++.+..+++..++|.|+..|.|.++-++........ .+
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~-~~ 116 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD-YV 116 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce-ee
Confidence 45666678999999999999999987776544555556677888889999999999999999999998874433222 22
Q ss_pred eee-cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 309 HRL-EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 309 ~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
... ..|...|++++|++++..++. | ...|+|.+-.+.+
T Consensus 117 t~~d~~~~~rVTal~Ws~~~~k~ys-G--D~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNGMKLYS-G--DSQGKVVLTELDS 155 (726)
T ss_pred ccccccCCceEEEEEecccccEEee-c--CCCceEEEEEech
Confidence 222 237889999999998666654 3 4789998887776
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.83 E-value=0.017 Score=53.55 Aligned_cols=227 Identities=11% Similarity=0.112 Sum_probs=123.2
Q ss_pred CCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEE--------
Q 012679 193 PDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVET-------- 262 (458)
Q Consensus 193 ~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~-------- 262 (458)
..++.|++|+.+| |.+++.........+. +...|..+..-. +.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3678999999998 9999984333333333 333488887732 4444443 499999998754332210
Q ss_pred -----EcccccceEeEE---EcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679 263 -----YRGHNQEVCGLK---WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG 334 (458)
Q Consensus 263 -----~~~h~~~v~~l~---~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~ 334 (458)
.......+...+ -......|+++ ....|.+|.......... .....+. -...+.+++|.+ ..+ +.|
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~-~~~ke~~-lp~~~~~i~~~~--~~i-~v~ 154 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFS-KLLKEIS-LPDPPSSIAFLG--NKI-CVG 154 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCccccc-ceeEEEE-cCCCcEEEEEeC--CEE-EEE
Confidence 111222333333 11233344444 445899988776422110 1133332 347788999984 344 443
Q ss_pred CCCCCCeEEEEECCCCCeeEEEeCCC-------------CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeE--EE
Q 012679 335 GGGGDRCIKFWNTHTGACLNSVDTGS-------------QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA--EL 399 (458)
Q Consensus 335 ~g~~d~~i~lwd~~~~~~~~~~~~~~-------------~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~--~~ 399 (458)
..+...+.|+.++.....+.... ++..+.. +++.+|++ .++.-.+.|. .|+... .+
T Consensus 155 ---~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~----~~~~g~fv~~-~G~~~r~~~i 225 (275)
T PF00780_consen 155 ---TSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC----YDNIGVFVNK-NGEPSRKSTI 225 (275)
T ss_pred ---eCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE----ecceEEEEcC-CCCcCcccEE
Confidence 35568899999877654442211 2223333 33444443 1333333333 333322 33
Q ss_pred eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679 400 SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442 (458)
Q Consensus 400 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~ 442 (458)
.- ...+.++++. ..+|+..+. +.|-||++.+++.+....
T Consensus 226 ~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 226 QW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred Ec-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 32 2345566663 457776655 559999999997765544
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.79 E-value=0.0007 Score=70.38 Aligned_cols=142 Identities=16% Similarity=0.154 Sum_probs=102.8
Q ss_pred CCEEEEE-ecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC-------CCeEEEEeCCCcEEEEEccCCCe-eEE-EEc
Q 012679 195 GRHIAIG-LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-------NHILTTGGMDGLIINNDVRVRDH-IVE-TYR 264 (458)
Q Consensus 195 g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-------~~~l~sg~~dg~i~vwd~~~~~~-~~~-~~~ 264 (458)
.++|+.- .....|+-.|+++|+.+.........+|..++.+ +...+.|-.+..+..||.|.... ++. ...
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 3456899999999999999997444558888763 45677888889999999997642 221 111
Q ss_pred --ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeE
Q 012679 265 --GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCI 342 (458)
Q Consensus 265 --~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i 342 (458)
.......|++-+.+| +||+|+.+|.|++||--.... ...+.+-..+|..|..+.+|.++|||+ +..|
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~A------KT~lp~lG~pI~~iDvt~DGkwilaTc----~tyL 641 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRA------KTALPGLGDPIIGIDVTADGKWILATC----KTYL 641 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhh------hhcCCCCCCCeeEEEecCCCcEEEEee----cceE
Confidence 233456777766665 799999999999999432221 344556678999999999999999996 6788
Q ss_pred EEEEC
Q 012679 343 KFWNT 347 (458)
Q Consensus 343 ~lwd~ 347 (458)
.|+++
T Consensus 642 lLi~t 646 (794)
T PF08553_consen 642 LLIDT 646 (794)
T ss_pred EEEEE
Confidence 88886
No 356
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.77 E-value=0.017 Score=55.86 Aligned_cols=231 Identities=15% Similarity=0.209 Sum_probs=125.8
Q ss_pred ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCC----------------CCCEEEEEEcCCCCEEEEEecC-
Q 012679 143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDE----------------NGPVTSVNWAPDGRHIAIGLNN- 204 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h----------------~~~V~~v~~s~~g~~la~g~~d- 204 (458)
.+....|++ ++.++...++.|++++..++...++.. .+. -+.-..+-|||||++||....|
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred ccccceeecCCCeeEEEecCceEEEECCCCCeEEecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC
Confidence 455678887 678888889999999988875443332 220 1123568899999999876433
Q ss_pred Ce-----------------------------------EEEEeCCCceeeE-Eec---CCCcccEEEEEe--CCCeEEEE-
Q 012679 205 CQ-----------------------------------VQLWDSTANRQLR-TLR---GGHRSRVGSLAW--NNHILTTG- 242 (458)
Q Consensus 205 g~-----------------------------------v~iwd~~~~~~~~-~~~---~~~~~~v~~l~~--~~~~l~sg- 242 (458)
.. +.|+|+.+++... ... .....-+..+.| ++..|+..
T Consensus 123 ~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 123 REVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred cCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence 11 3334444443321 111 113345666777 33323322
Q ss_pred -eCCC---cEEEEEccCCCeeEEEEcccccc---eEeEEEc-CCCC-EEEEEECCCcEEEEeCCCCCCCCcceeeeeecc
Q 012679 243 -GMDG---LIINNDVRVRDHIVETYRGHNQE---VCGLKWS-ASGQ-QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313 (458)
Q Consensus 243 -~~dg---~i~vwd~~~~~~~~~~~~~h~~~---v~~l~~s-pd~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 313 (458)
.++. .+.+.|..++...+......... -....|. +++. +|.....||--+||-+...... ...+..
T Consensus 203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-----~~~lT~ 277 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-----PRQLTS 277 (353)
T ss_dssp EETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-----EEESS-
T ss_pred cccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-----eecccc
Confidence 3332 35566776554322221112222 2245554 5555 4445556776555544333321 345555
Q ss_pred cccceeE-EEecCCCCcEEEEeCC--CCCCeEEEEECCCCCeeEEEeCCCCeE-EEEEcCCCCeEEEEec
Q 012679 314 HTSAVKA-IAWCPFQSNLLATGGG--GGDRCIKFWNTHTGACLNSVDTGSQVC-ALLWNKNERELLSSHG 379 (458)
Q Consensus 314 h~~~v~~-l~~~p~~~~ll~s~~g--~~d~~i~lwd~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~g 379 (458)
..-.|.. +.|++.+..++.++.+ .....|..-++..+..+..+....... .+.|+|++++++..+.
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 5566644 7788888888888763 224467777777445556665555444 9999999999987653
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00013 Score=71.57 Aligned_cols=90 Identities=18% Similarity=0.379 Sum_probs=72.9
Q ss_pred cceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEE-EEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 144 LNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVT-SVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 144 ~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~-~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
+--+.|+| +-++.+..+|.|.+..+. ..++.+++-|+..++ +++|.|||+.||+|-.||+|++.|++++..+..
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec---cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 34578988 446777788999999887 344788887777787 999999999999999999999999999998887
Q ss_pred ecCCCcccEEEEEeCC
Q 012679 221 LRGGHRSRVGSLAWNN 236 (458)
Q Consensus 221 ~~~~~~~~v~~l~~~~ 236 (458)
....-...|.++-|+.
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 4433667788888863
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.77 E-value=0.002 Score=67.01 Aligned_cols=134 Identities=16% Similarity=0.227 Sum_probs=92.1
Q ss_pred CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEeCCCc--eeeEEec--CCCcccEE
Q 012679 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-----DGRHIAIGLNNCQVQLWDSTAN--RQLRTLR--GGHRSRVG 230 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-----~g~~la~g~~dg~v~iwd~~~~--~~~~~~~--~~~~~~v~ 230 (458)
.+.|+-.|++.|++..-..+.. ..+|..++-.. +.....+|-.+..+..||.+-. +.+..-. -.......
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~-~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCC-CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 5789999999999954444432 23355543221 1334567888889999998753 2332111 11445677
Q ss_pred EEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679 231 SLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296 (458)
Q Consensus 231 ~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~ 296 (458)
|++-. ..+||+|+.+|.|++||- .+......+.+-..+|.+|..+.||+++++.+. ..|.+++.
T Consensus 582 ~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 88875 589999999999999994 344445567788899999999999999877665 56667764
No 359
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.74 E-value=0.011 Score=53.36 Aligned_cols=164 Identities=16% Similarity=0.203 Sum_probs=112.8
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC
Q 012679 180 DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD 257 (458)
Q Consensus 180 ~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 257 (458)
.+-...|.++.|+|+.+.|++....+.-.|+=...|+.++++.-..-...-.+.| ++.+.++--+++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 3445569999999999999998888888888778899999887534444556677 45566666678888888776553
Q ss_pred eeEE------EE---cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc-------ccceeEE
Q 012679 258 HIVE------TY---RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH-------TSAVKAI 321 (458)
Q Consensus 258 ~~~~------~~---~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l 321 (458)
..+. .+ ...+...-+++|.|.+..|..+-+-+-+.||.......... .+....+ -..|.++
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~---~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS---VHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc---cccccCcccccceEeeccccc
Confidence 2111 11 11255678899999999999998888888887764432100 1111112 2347788
Q ss_pred EecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679 322 AWCPFQSNLLATGGGGGDRCIKFWNTH 348 (458)
Q Consensus 322 ~~~p~~~~ll~s~~g~~d~~i~lwd~~ 348 (458)
.|++..+.+++-+. +++.+...|..
T Consensus 239 ~~~~~~~~LLVLS~--ESr~l~Evd~~ 263 (316)
T COG3204 239 EFNAITNSLLVLSD--ESRRLLEVDLS 263 (316)
T ss_pred eecCCCCcEEEEec--CCceEEEEecC
Confidence 89987788888765 77777777754
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.74 E-value=0.0084 Score=57.14 Aligned_cols=134 Identities=11% Similarity=0.156 Sum_probs=92.1
Q ss_pred CEEEEEECCCC-----CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-eeEEecCCCcccEEEEEe
Q 012679 161 STVYLWDASDG-----TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-QLRTLRGGHRSRVGSLAW 234 (458)
Q Consensus 161 ~~v~iwd~~~~-----~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~ 234 (458)
|.|+++++... ++..+... ...++|++++-- +| +|+++. .+.|.+|++...+ ....-.......+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 44434333 346889999876 34 455554 4689999998877 444333224458888888
Q ss_pred CCCeEEEEeCCCcEEEEEccCCCeeEEEE--cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 235 NNHILTTGGMDGLIINNDVRVRDHIVETY--RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 235 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
.+++++.|+....+.++..+.....+..+ ......++++.+-++++.++.+..+|.+.++....
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 88899999998888888665433212222 22355688899987777999999999999998763
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.73 E-value=0.0079 Score=58.52 Aligned_cols=194 Identities=13% Similarity=0.163 Sum_probs=104.3
Q ss_pred eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec-------CCCcccEEEEEe-------CC---C
Q 012679 175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR-------GGHRSRVGSLAW-------NN---H 237 (458)
Q Consensus 175 ~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~-------~~~~~~v~~l~~-------~~---~ 237 (458)
+..-+....++|++++.|.= -++|+|..+|.+.|.|++....+..-. ......|+++.| ++ -
T Consensus 78 P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred chhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 34444455789999999844 499999999999999998877666522 123456888888 22 4
Q ss_pred eEEEEeCCCcEEEEEccC--CCe----eEEEEcccccceEeEE-EcCC-C-------------------CEEEEEECCCc
Q 012679 238 ILTTGGMDGLIINNDVRV--RDH----IVETYRGHNQEVCGLK-WSAS-G-------------------QQLASGGNDNL 290 (458)
Q Consensus 238 ~l~sg~~dg~i~vwd~~~--~~~----~~~~~~~h~~~v~~l~-~spd-~-------------------~~l~sg~~dg~ 290 (458)
.+++|...|.+.+|.+.- +.. .......+.+.|..+. ++.+ | +.++....+..
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 688999999999998752 121 1112224556665554 3221 1 12344445678
Q ss_pred EEEEeCCCCCCCCcceeeeeecccccceeEEEecC----CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC-----
Q 012679 291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP----FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ----- 361 (458)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p----~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~----- 361 (458)
++++...+.+. .++..........+.+-+ .+...|++-. .+|.|+++.+..-+.+..+.....
T Consensus 237 irv~~~~~~k~------~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~ 308 (395)
T PF08596_consen 237 IRVFKPPKSKG------AHKSFDDPFLCSSASVVPTISRNGGYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRR 308 (395)
T ss_dssp EEEE-TT---E------EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHH
T ss_pred eEEEeCCCCcc------cceeeccccccceEEEEeecccCCceEEEEEE--CCCcEEEEECCCchHhhcccCCCcccccc
Confidence 99998776654 333333222333344421 2344444444 799999999999998888766432
Q ss_pred eEEEEEcCCCCeEEEE
Q 012679 362 VCALLWNKNERELLSS 377 (458)
Q Consensus 362 v~~~~~s~~~~~l~~~ 377 (458)
+....++++|..++.+
T Consensus 309 ~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 309 LSSSSISRNGDIFYWT 324 (395)
T ss_dssp HTT-EE-TTS-EEEE-
T ss_pred ccccEECCCCCEEEEe
Confidence 3445667777766554
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.71 E-value=0.036 Score=50.18 Aligned_cols=198 Identities=13% Similarity=0.150 Sum_probs=108.8
Q ss_pred CcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679 225 HRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300 (458)
Q Consensus 225 ~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~ 300 (458)
-...+..|+|+ +.++++....+.|..++.+ +. ++..+. ...+..-+|++..++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 44569999995 3577777888888888864 33 444443 224567889998888777766668999999985443
Q ss_pred CCCcceeeeee-----cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC---CCeeEEEe---------CCCCeE
Q 012679 301 SNSVTQWLHRL-----EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT---GACLNSVD---------TGSQVC 363 (458)
Q Consensus 301 ~~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~---~~~~~~~~---------~~~~v~ 363 (458)
..........+ ..+...+..++|.|.+..++++- ...-..++.+.. ...+.... .-..+.
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 22111111111 13456689999999888888764 444445555443 22222111 124578
Q ss_pred EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC---------CcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679 364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT---------SRVLFMAQSPDGCTVASAAADETLRFW 430 (458)
Q Consensus 364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~---------~~V~~l~~spdg~~l~s~s~Dg~i~iW 430 (458)
++.++|....+++.+ .....|..+| .+++.+..+.-.. ...-.|+|.++|++.+ .+.-+..+++
T Consensus 175 ~l~~~p~t~~lliLS-~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILS-DESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEE-TTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ceEEcCCCCeEEEEE-CCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 999999887777664 3678888898 6676655443111 2467899999997655 4565544443
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.0019 Score=63.48 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=106.5
Q ss_pred EEcccccceEeEEEcCCCCEEEEEE---CC-CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679 262 TYRGHNQEVCGLKWSASGQQLASGG---ND-NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 262 ~~~~h~~~v~~l~~spd~~~l~sg~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~ 337 (458)
.+..-...+..-+|+|++..++... .. ..+.++|+..+.... +..+.+ .-..-+|+|++..++.+....
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~----i~~~~g---~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV----ILNFNG---NNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce----eeccCC---ccCCccCCCCCCEEEEEECCC
Confidence 3334455677788999998876542 22 469999999887632 223333 334578999999999988743
Q ss_pred CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC
Q 012679 338 GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG 415 (458)
Q Consensus 338 ~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg 415 (458)
..-.|.+.|+.++...+.....+.-+.-.|+|+|+.++.++. ..| .|.+++.+.... ..+......-..-.|+|||
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sd-r~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG 337 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSD-RGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDG 337 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeC-CCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCC
Confidence 344577778888774442233334457789999999998753 444 466666665544 3333333322377899999
Q ss_pred CEEEEEeCC-Cc--EEEEecCCCC
Q 012679 416 CTVASAAAD-ET--LRFWNVFGAP 436 (458)
Q Consensus 416 ~~l~s~s~D-g~--i~iW~~~~~~ 436 (458)
.+|+..+.. |. |.+.++.++.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCC
Confidence 999887753 44 5555554444
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.70 E-value=0.00014 Score=44.05 Aligned_cols=38 Identities=42% Similarity=0.650 Sum_probs=34.0
Q ss_pred eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 394 VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 394 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
+.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778999999999999999999999999999996
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.69 E-value=0.0037 Score=48.09 Aligned_cols=99 Identities=15% Similarity=0.262 Sum_probs=69.3
Q ss_pred EEEEEEcC---CC-CEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeE
Q 012679 186 VTSVNWAP---DG-RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIV 260 (458)
Q Consensus 186 V~~v~~s~---~g-~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~ 260 (458)
|+++++.. || +.|++|+.|..|++|+ ..+.+..+. ....|.+|.- .+..++.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~--e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl--- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT--ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL--- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe--cccceEEEEEcCCCEEEEEecCCEEEEEeCccee---
Confidence 56666654 32 5899999999999998 446777777 5677888777 57899999999999999864332
Q ss_pred EEEcccccceEeEEEcC-C--C-CEEEEEECCCcEE
Q 012679 261 ETYRGHNQEVCGLKWSA-S--G-QQLASGGNDNLLH 292 (458)
Q Consensus 261 ~~~~~h~~~v~~l~~sp-d--~-~~l~sg~~dg~i~ 292 (458)
-..+. ...++++.+.. + | ..|++|-.+|.|-
T Consensus 75 WRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22222 23355565543 2 2 3688888888764
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00057 Score=67.17 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=76.1
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEE-EEEe--CCCeEEEEeCCCcEEEEEccCCCee
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVG-SLAW--NNHILTTGGMDGLIINNDVRVRDHI 259 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~-~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 259 (458)
...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++.. +...++ +++| +|+.|+.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 3458889999999999999999999999988 777888886 666666 9999 6899999999999999999988765
Q ss_pred EEEEcccccceEeEEEc
Q 012679 260 VETYRGHNQEVCGLKWS 276 (458)
Q Consensus 260 ~~~~~~h~~~v~~l~~s 276 (458)
......-...|.++.|.
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 44444455677777776
No 367
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.46 E-value=0.011 Score=60.47 Aligned_cols=217 Identities=15% Similarity=0.173 Sum_probs=123.3
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-C-----eEEEEeCCCceeeE--EecCCCcccEEEE
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-C-----QVQLWDSTANRQLR--TLRGGHRSRVGSL 232 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-g-----~v~iwd~~~~~~~~--~~~~~~~~~v~~l 232 (458)
..+..||..++.+..+..+..... -.+++.. +|...++|+.| | .+..||..+++-.. .+.. ........
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-~R~~~~v~ 377 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT-KRSDFGVA 377 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC-ccccceeE
Confidence 478999999998877776664333 3344443 55778888888 3 57888887776332 2222 33445555
Q ss_pred EeCCCeEEEEeCCCc-----EEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCC------cEEEEeCCCCC
Q 012679 233 AWNNHILTTGGMDGL-----IINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDN------LLHIWDRSMAS 300 (458)
Q Consensus 233 ~~~~~~l~sg~~dg~-----i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg------~i~iwd~~~~~ 300 (458)
..+|.+.++|+.||. |-.||..+..... ..+.........+. -+|.+.++||.++ .+..||..+..
T Consensus 378 ~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 378 VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 668999999999974 6778887665311 11111111122222 2688888888654 46788877765
Q ss_pred CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC-----eEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEE
Q 012679 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR-----CIKFWNTHTGACLNSVDTGSQVCALLWNKNERELL 375 (458)
Q Consensus 301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~-----~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 375 (458)
..........-..+. ++. .+..+++.|| .|+ ++..||..+.+....-..............+..++
T Consensus 456 W~~~~~M~~~R~~~g-----~a~--~~~~iYvvGG--~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly 526 (571)
T KOG4441|consen 456 WTLIAPMNTRRSGFG-----VAV--LNGKIYVVGG--FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLY 526 (571)
T ss_pred eeecCCcccccccce-----EEE--ECCEEEEECC--ccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEE
Confidence 422111111111111 222 2467778775 444 37788888877655433333444444444455555
Q ss_pred EEecCCCC-----cEEEEeCCC
Q 012679 376 SSHGFTQN-----QLTLWKYPS 392 (458)
Q Consensus 376 ~~~g~~d~-----~i~iwd~~~ 392 (458)
+..| .+| +|..||..+
T Consensus 527 ~vGG-~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 527 AVGG-FDGNNNLNTVECYDPET 547 (571)
T ss_pred EEec-ccCccccceeEEcCCCC
Confidence 5545 333 455565443
No 368
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.45 E-value=0.067 Score=46.75 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=118.2
Q ss_pred CCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe---C-CCeEEEE-eCCCcEEEEEccCCCe-eEEEEc----
Q 012679 195 GRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---N-NHILTTG-GMDGLIINNDVRVRDH-IVETYR---- 264 (458)
Q Consensus 195 g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~---~-~~~l~sg-~~dg~i~vwd~~~~~~-~~~~~~---- 264 (458)
+.++.+--..|.|.-||+.+.+..+.--. ..++.++.+ + +..++++ +..-.|.-||...... +..++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie--~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIE--GPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEe--cCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 34555555566777788877654443221 111333333 2 2333333 3334455676432221 112211
Q ss_pred -ccccceEeEEEcCCCCEEEEEEC---------CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679 265 -GHNQEVCGLKWSASGQQLASGGN---------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG 334 (458)
Q Consensus 265 -~h~~~v~~l~~spd~~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~ 334 (458)
......+.-..+|+|++++-.-. .|.++.|-.... +..+...-.--..++|+.+...+.++-
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--------v~~i~~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--------VELIWNCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--------ceeeehhccCCccccccccCcEEEEEc
Confidence 11334556677899998542211 244555543221 222223334446899998888888876
Q ss_pred CCCCCCeEEEEE--CCCCCee-----EEEeC----CC-CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679 335 GGGGDRCIKFWN--THTGACL-----NSVDT----GS-QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH 402 (458)
Q Consensus 335 ~g~~d~~i~lwd--~~~~~~~-----~~~~~----~~-~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h 402 (458)
+ .+-.|.-|| ..+|... ..+.. .+ ..-.++....|+..++ .++.++|..+|..+++.+.+++-.
T Consensus 177 s--ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va--~~ng~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 177 S--LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVA--TFNGGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred c--CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEE--EecCcEEEEECCCCCcEEEEEEcC
Confidence 5 778887787 6666532 22222 11 1345566777887777 447899999999999999999988
Q ss_pred CCcEEEEEEcC
Q 012679 403 TSRVLFMAQSP 413 (458)
Q Consensus 403 ~~~V~~l~~sp 413 (458)
+..|++++|--
T Consensus 253 t~qitsccFgG 263 (310)
T KOG4499|consen 253 TPQITSCCFGG 263 (310)
T ss_pred CCceEEEEecC
Confidence 99999999964
No 369
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.44 E-value=0.076 Score=51.11 Aligned_cols=195 Identities=11% Similarity=0.120 Sum_probs=93.0
Q ss_pred CeEEEEe-CCCcEEEEEccCCC---eeEEEEcc---cc----cceEeEEEcCCCCEEEEEE--C----CCcEEEEeCCCC
Q 012679 237 HILTTGG-MDGLIINNDVRVRD---HIVETYRG---HN----QEVCGLKWSASGQQLASGG--N----DNLLHIWDRSMA 299 (458)
Q Consensus 237 ~~l~sg~-~dg~i~vwd~~~~~---~~~~~~~~---h~----~~v~~l~~spd~~~l~sg~--~----dg~i~iwd~~~~ 299 (458)
++|+..+ ..+.|+|.|+.+.. .+.+.+.. +. ..-..+..-|+|+.++++- . -|-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 5666665 78899999998542 23344432 11 1223344567898887753 2 245777776654
Q ss_pred CCCCcceeeeeecc---cccceeEEEecCCCCcEEEEeC------------------CCCCCeEEEEECCCCCeeEEEeC
Q 012679 300 SSNSVTQWLHRLEE---HTSAVKAIAWCPFQSNLLATGG------------------GGGDRCIKFWNTHTGACLNSVDT 358 (458)
Q Consensus 300 ~~~~~~~~~~~~~~---h~~~v~~l~~~p~~~~ll~s~~------------------g~~d~~i~lwd~~~~~~~~~~~~ 358 (458)
.. ...... ...--..+-|.|. .++++|.. +....++.+||+.+.+.+++++.
T Consensus 168 ~v------~g~We~~~~~~~~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 168 EV------KGRWEKDRGPQPFGYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp -E------EEE--SB-TT------EEEETT-TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred cc------cceeccCCCCCCCCCCeEEcCC-CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 33 222221 1223456778884 55555543 22457899999999999999988
Q ss_pred CCC---eEEEEE--cCCCCeEEEEecCCCCcEEEEeCCCce----eeEEEeCC-----------------CCcEEEEEEc
Q 012679 359 GSQ---VCALLW--NKNERELLSSHGFTQNQLTLWKYPSMV----KMAELSGH-----------------TSRVLFMAQS 412 (458)
Q Consensus 359 ~~~---v~~~~~--s~~~~~l~~~~g~~d~~i~iwd~~~~~----~~~~~~~h-----------------~~~V~~l~~s 412 (458)
+.. ...+.| .|+..+=++.+.-.....++|.-..++ ++.++..- ..-|+.|..|
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 743 334444 555666555444333334444434332 33333211 2347999999
Q ss_pred CCCCEEEEEe-CCCcEEEEecCCCCcc
Q 012679 413 PDGCTVASAA-ADETLRFWNVFGAPQV 438 (458)
Q Consensus 413 pdg~~l~s~s-~Dg~i~iW~~~~~~~~ 438 (458)
.|.++|..++ .+|.|+.||+......
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 9999997666 5899999999876543
No 370
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.43 E-value=0.18 Score=51.35 Aligned_cols=249 Identities=12% Similarity=0.149 Sum_probs=137.2
Q ss_pred cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEec------CCeEEEEeCCCceeeEEe
Q 012679 150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLN------NCQVQLWDSTANRQLRTL 221 (458)
Q Consensus 150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~------dg~v~iwd~~~~~~~~~~ 221 (458)
..+.++.+..++.|+-.|..+|+..-...+..+... ..+.-+| .+..++++.. +|.|.-+|.++|+.+..+
T Consensus 119 ~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 119 YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 346788888999999999999997322222221110 1111122 2335566543 689999999999988776
Q ss_pred cCCCcc------------------------------cEE-EEEeC--CCeEEEEeCC-----C-----------cEEEEE
Q 012679 222 RGGHRS------------------------------RVG-SLAWN--NHILTTGGMD-----G-----------LIINND 252 (458)
Q Consensus 222 ~~~~~~------------------------------~v~-~l~~~--~~~l~sg~~d-----g-----------~i~vwd 252 (458)
...... .+. .++++ ..++..+... + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 531111 010 12333 2445554421 2 566677
Q ss_pred ccCCCeeEEEEc--ccc-------cceEeEEEcCCCC---EEEEEECCCcEEEEeCCCCCCCCcc------eeeeeeccc
Q 012679 253 VRVRDHIVETYR--GHN-------QEVCGLKWSASGQ---QLASGGNDNLLHIWDRSMASSNSVT------QWLHRLEEH 314 (458)
Q Consensus 253 ~~~~~~~~~~~~--~h~-------~~v~~l~~spd~~---~l~sg~~dg~i~iwd~~~~~~~~~~------~~~~~~~~h 314 (458)
+++++.. -.++ .|. ....-+....+|+ .++.+..+|.+++.|..+++..... .+...+...
T Consensus 278 ~~TG~~~-W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~ 356 (527)
T TIGR03075 278 PDTGKIK-WHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK 356 (527)
T ss_pred cccCCEE-EeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence 7777642 2222 121 1111223334666 7789999999999999887652100 000000000
Q ss_pred ------------------ccc-----------eeEEEecCCCCcEEEEeCC-----------------------------
Q 012679 315 ------------------TSA-----------VKAIAWCPFQSNLLATGGG----------------------------- 336 (458)
Q Consensus 315 ------------------~~~-----------v~~l~~~p~~~~ll~s~~g----------------------------- 336 (458)
... -..++++|....+++-..-
T Consensus 357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 436 (527)
T TIGR03075 357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP 436 (527)
T ss_pred CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence 000 0125566643333322110
Q ss_pred -CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679 337 -GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH 402 (458)
Q Consensus 337 -~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h 402 (458)
..-+.|.-+|+.+|+.+.......+...-...-.+..++. |..+|.++.+|..+++.+.+++-.
T Consensus 437 ~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~--g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 437 DDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFY--GTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEE--ECCCCeEEEEECCCCCEeEEEeCC
Confidence 0125688899999998887765443222112224445555 557999999999999999888643
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.08 Score=49.65 Aligned_cols=216 Identities=13% Similarity=0.086 Sum_probs=126.0
Q ss_pred EEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-CC-CeEEEEeCCCcEEEEEccCCCeeEEEEc--
Q 012679 190 NWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NN-HILTTGGMDGLIINNDVRVRDHIVETYR-- 264 (458)
Q Consensus 190 ~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~-- 264 (458)
.|.++.. ++.+--..+.|.-|+..+++.. .+. +...+.++.. +. ..|+++ ..| +.+++.+.+.. +..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~--~p~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~-~t~~~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP--SPGGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGK-ITLLAEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE--CCCCcccceeecCCCeEEEE-ccc-cEEEeccCCce-eEEeccc
Confidence 4666666 4444456678888888766432 222 3333444444 43 344443 333 44555543432 11111
Q ss_pred --c-cccceEeEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679 265 --G-HNQEVCGLKWSASGQQLASGGN-----------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330 (458)
Q Consensus 265 --~-h~~~v~~l~~spd~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 330 (458)
+ .....+.+...|+|.+-++... -|.|+.+|. .+.. ...+..+-..-+.|+|+|++..+
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~------~~l~~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV------VRLLDDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE------EEeecCcEEecCceEECCCCCEE
Confidence 1 1234566778888886665433 123444443 2222 33444445566789999999888
Q ss_pred EEEeCCCCCCeEEEEECCC--CC---eeEEEe---CCCCeEEEEEcCCCCeEEEEecCCC-CcEEEEeCCCceeeEEEeC
Q 012679 331 LATGGGGGDRCIKFWNTHT--GA---CLNSVD---TGSQVCALLWNKNERELLSSHGFTQ-NQLTLWKYPSMVKMAELSG 401 (458)
Q Consensus 331 l~s~~g~~d~~i~lwd~~~--~~---~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~d-~~i~iwd~~~~~~~~~~~~ 401 (458)
+++-+ ..+.|.-|++.. +. ....+. ..+..-.++...+|.+.+++. .+ +.|.+|+.. ++++..+.-
T Consensus 178 y~aDT--~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~--~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 178 YVADT--PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV--WGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred EEEeC--CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc--cCCceEEEECCC-CcEEEEEEC
Confidence 88765 678888887752 21 111111 234566788888888886532 33 489999988 999998887
Q ss_pred CCCcEEEEEEc-CCCCEEEEEeC
Q 012679 402 HTSRVLFMAQS-PDGCTVASAAA 423 (458)
Q Consensus 402 h~~~V~~l~~s-pdg~~l~s~s~ 423 (458)
....+++++|- |+.+.|...+.
T Consensus 253 P~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 253 PVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCCccceEeCCCcCEEEEEec
Confidence 77788888885 45555554444
No 372
>PHA02713 hypothetical protein; Provisional
Probab=97.41 E-value=0.012 Score=60.28 Aligned_cols=222 Identities=13% Similarity=0.059 Sum_probs=111.2
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEeCCCceee--EEecCCCcccEEEEE
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN------CQVQLWDSTANRQL--RTLRGGHRSRVGSLA 233 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d------g~v~iwd~~~~~~~--~~~~~~~~~~v~~l~ 233 (458)
.+..||..++++..+..+...... .+++. -++...++|+.+ ..+..||..++.-. ..+.. .........
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~-~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK-NRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc-hhhceeEEE
Confidence 578899998887665555432221 12222 266777777753 34788898776532 22221 222344556
Q ss_pred eCCCeEEEEeCCC-----cEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCC------------------
Q 012679 234 WNNHILTTGGMDG-----LIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDN------------------ 289 (458)
Q Consensus 234 ~~~~~l~sg~~dg-----~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg------------------ 289 (458)
.++.+.+.||.++ .+..||..+..... ..+.........+. -+|++.+.||.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 6888889998764 47889987654311 11111111111222 2677888887653
Q ss_pred -----cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC----CCeEEEEECCC-CCeeEEEeCC
Q 012679 290 -----LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG----DRCIKFWNTHT-GACLNSVDTG 359 (458)
Q Consensus 290 -----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~----d~~i~lwd~~~-~~~~~~~~~~ 359 (458)
.+..||..+..-.. +..+....... +++.. ++.+.+.||.+. ...+..||..+ .+....-...
T Consensus 428 ~~~~~~ve~YDP~td~W~~----v~~m~~~r~~~-~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWET----LPNFWTGTIRP-GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred ccccceEEEECCCCCeEee----cCCCCcccccC-cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 46778877654321 11111111111 12222 356777765211 12467899887 4543222222
Q ss_pred CCeEEEEEcCCCCeEEEEecCCCC--cEEEEeCCCceee
Q 012679 360 SQVCALLWNKNERELLSSHGFTQN--QLTLWKYPSMVKM 396 (458)
Q Consensus 360 ~~v~~~~~s~~~~~l~~~~g~~d~--~i~iwd~~~~~~~ 396 (458)
.+.......--+..|.+.+| .++ .+..||..+.+-.
T Consensus 501 ~~r~~~~~~~~~~~iyv~Gg-~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 501 SRLSALHTILHDNTIMMLHC-YESYMLQDTFNVYTYEWN 538 (557)
T ss_pred cccccceeEEECCEEEEEee-ecceeehhhcCccccccc
Confidence 22111111112334444434 445 5666776655433
No 373
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.40 E-value=0.019 Score=58.89 Aligned_cols=231 Identities=17% Similarity=0.207 Sum_probs=123.6
Q ss_pred CCCCEEEEEecCC------eEEEEeCCCceeeEEecCC-CcccEEEEEeCCCeEEEEeCC-C-----cEEEEEccCCCee
Q 012679 193 PDGRHIAIGLNNC------QVQLWDSTANRQLRTLRGG-HRSRVGSLAWNNHILTTGGMD-G-----LIINNDVRVRDHI 259 (458)
Q Consensus 193 ~~g~~la~g~~dg------~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~~~~~l~sg~~d-g-----~i~vwd~~~~~~~ 259 (458)
..+..+++|+.++ .+..||..++......... ....+.....++.+.++|+.| | .+..||.++.+..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 3456677777663 6888998887543322221 223344444578899999999 3 5678888776631
Q ss_pred EEEEcccccceEeEEE-cCCCCEEEEEECCCc-----EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679 260 VETYRGHNQEVCGLKW-SASGQQLASGGNDNL-----LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333 (458)
Q Consensus 260 ~~~~~~h~~~v~~l~~-spd~~~l~sg~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s 333 (458)
....-...-..+.. .-+|.+.|+||.||. |-.||..+.+.... .. ........+....++.+.++
T Consensus 363 --~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v----a~---m~~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 363 --PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV----AP---MLTRRSGHGVAVLGGKLYII 433 (571)
T ss_pred --ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc----CC---CCcceeeeEEEEECCEEEEE
Confidence 11111111111111 127888899999864 77788777654221 11 11122333333335778887
Q ss_pred eCCCCC----CeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCC----CcEEEEeCCCce--eeEEEeCCC
Q 012679 334 GGGGGD----RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ----NQLTLWKYPSMV--KMAELSGHT 403 (458)
Q Consensus 334 ~~g~~d----~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d----~~i~iwd~~~~~--~~~~~~~h~ 403 (458)
||.+.. ..+..||..+++....-.....-......--+..|++.+|+.+ ..|..||..+.+ .+..+....
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 762222 3578899888775544333222111112223344555545432 236778876644 333333333
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCc-----EEEEecCC
Q 012679 404 SRVLFMAQSPDGCTVASAAADET-----LRFWNVFG 434 (458)
Q Consensus 404 ~~V~~l~~spdg~~l~s~s~Dg~-----i~iW~~~~ 434 (458)
..+-...+ ++...+.|+.||. |..||-..
T Consensus 514 s~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 514 SAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 33333333 5777788888764 56665443
No 374
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.36 E-value=0.17 Score=49.34 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=55.9
Q ss_pred ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--CCCeEEEEEcC----------------CCC
Q 012679 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--GSQVCALLWNK----------------NER 372 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~s~----------------~~~ 372 (458)
+......+.+++.+|+ ..++|+.. .=|.|.++|+.++..++.++. +.++.-+.... ...
T Consensus 303 l~D~~R~~~~i~~sP~-~~laA~tD--slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 303 LPDSKREGESICLSPS-GRLAAVTD--SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eccCCceEEEEEECCC-CCEEEEEc--CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 3344456789999997 55666654 668999999999988776653 22221111111 112
Q ss_pred eEEEEecCCCCcEEEEeCCCceeeEEEe
Q 012679 373 ELLSSHGFTQNQLTLWKYPSMVKMAELS 400 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~ 400 (458)
.+++.+.-.-|.|.||.++++..+..+.
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 3444445568899999998888777664
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.34 E-value=0.00074 Score=40.57 Aligned_cols=36 Identities=42% Similarity=0.827 Sum_probs=32.0
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEe
Q 012679 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD 211 (458)
Q Consensus 176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd 211 (458)
...+..|...|.++.|.+++.++++++.||.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455567888999999999999999999999999996
No 376
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.32 E-value=0.022 Score=43.97 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=70.0
Q ss_pred eeEEEecC---CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce
Q 012679 318 VKAIAWCP---FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV 394 (458)
Q Consensus 318 v~~l~~~p---~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~ 394 (458)
|.+|+++. ++..-|++|+ .|..|++|+ ..+.+..+.....+++++-...+++.+ +..+|+|-+|+- ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs--~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y---~l~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGS--DDFEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAY---ALANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEec--CCcEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEE---EecCCEEEEEeC--cc
Confidence 45566544 5556777766 999999998 457888998999999999888866444 447899999875 33
Q ss_pred eeEEEeCCCCcEEEEEEcC---CC-CEEEEEeCCCcEE
Q 012679 395 KMAELSGHTSRVLFMAQSP---DG-CTVASAAADETLR 428 (458)
Q Consensus 395 ~~~~~~~h~~~V~~l~~sp---dg-~~l~s~s~Dg~i~ 428 (458)
.+...+. ...++++++.. || .-|++|-.+|.|-
T Consensus 73 RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3444442 33466666543 22 2688888888764
No 377
>PHA02713 hypothetical protein; Provisional
Probab=97.29 E-value=0.014 Score=60.01 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=96.6
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC-----eEEEEeCCCceeeE--EecCCCcccEEEEE
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC-----QVQLWDSTANRQLR--TLRGGHRSRVGSLA 233 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~~~~~~--~~~~~~~~~v~~l~ 233 (458)
..+..||..+..+..+..+.........+. -+|+..++|+.+| .+..||..+++-.. .+.. .......+.
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~-~r~~~~~~~ 396 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPI-ALSSYGMCV 396 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCc-ccccccEEE
Confidence 357888988877654444432222222222 2677778888764 48899988764322 2222 122233455
Q ss_pred eCCCeEEEEeCCC-----------------------cEEEEEccCCCee-EEEEcccccceEeEEEcCCCCEEEEEECC-
Q 012679 234 WNNHILTTGGMDG-----------------------LIINNDVRVRDHI-VETYRGHNQEVCGLKWSASGQQLASGGND- 288 (458)
Q Consensus 234 ~~~~~l~sg~~dg-----------------------~i~vwd~~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~d- 288 (458)
.++.+.+.|+.++ .+..||..+.... +..+....... +++ .-++++.+.||.+
T Consensus 397 ~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~ 474 (557)
T PHA02713 397 LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKD 474 (557)
T ss_pred ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCC
Confidence 6888888888653 4777888766431 11111111111 122 2357777777754
Q ss_pred -----CcEEEEeCCC-CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC--eEEEEECCCCCee
Q 012679 289 -----NLLHIWDRSM-ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR--CIKFWNTHTGACL 353 (458)
Q Consensus 289 -----g~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~~~ 353 (458)
..+..||..+ ..-.. +..+.........+++ ++.+.++|| .|+ .+..||..+.+-.
T Consensus 475 ~~~~~~~ve~Ydp~~~~~W~~----~~~m~~~r~~~~~~~~---~~~iyv~Gg--~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 475 EKNVKTCIFRYNTNTYNGWEL----ITTTESRLSALHTILH---DNTIMMLHC--YESYMLQDTFNVYTYEWN 538 (557)
T ss_pred CCccceeEEEecCCCCCCeeE----ccccCcccccceeEEE---CCEEEEEee--ecceeehhhcCccccccc
Confidence 2467888876 44311 2222222222222332 467888876 666 6777777766543
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.0039 Score=65.16 Aligned_cols=97 Identities=25% Similarity=0.371 Sum_probs=72.1
Q ss_pred CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEE
Q 012679 153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSL 232 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 232 (458)
-+++++..|.|-..|... .+.++..-..-.++|++++|+.+|..++.|-.+|.|.+||+.+++.++.+.. |..+...+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e-~~ap~t~v 178 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE-HGAPVTGV 178 (1206)
T ss_pred eEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee-cCCccceE
Confidence 467777788888888654 2322333333468999999999999999999999999999999999888876 65555544
Q ss_pred Ee----C-CCeEEEEeCCCcEEEEEc
Q 012679 233 AW----N-NHILTTGGMDGLIINNDV 253 (458)
Q Consensus 233 ~~----~-~~~l~sg~~dg~i~vwd~ 253 (458)
-+ + +..++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 33 3 456888888886 4543
No 379
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.28 E-value=0.18 Score=48.13 Aligned_cols=237 Identities=15% Similarity=0.160 Sum_probs=119.3
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee---eEEe---cCCCcccEEEEEeCC-----CeEEEEeCC--------
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ---LRTL---RGGHRSRVGSLAWNN-----HILTTGGMD-------- 245 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~---~~~~---~~~~~~~v~~l~~~~-----~~l~sg~~d-------- 245 (458)
..+.|+|.|||++++ +...|.|.+++ ..+.. +..+ ..........+++++ ..|......
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 368899999997665 56699999999 44433 2222 122455678899965 344433331
Q ss_pred -CcEEEEEccCC-------CeeEEEEcc---cccceEeEEEcCCCCEEEEEECCCc-------------EEEEeCCCCCC
Q 012679 246 -GLIINNDVRVR-------DHIVETYRG---HNQEVCGLKWSASGQQLASGGNDNL-------------LHIWDRSMASS 301 (458)
Q Consensus 246 -g~i~vwd~~~~-------~~~~~~~~~---h~~~v~~l~~spd~~~l~sg~~dg~-------------i~iwd~~~~~~ 301 (458)
..|.-|..... +.++..+.. .......|.|.|||.+.++.+..+. |.-.+....-.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444444333 112222222 2334567999999977776654332 22223221100
Q ss_pred C--Cc------ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC----------------------
Q 012679 302 N--SV------TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA---------------------- 351 (458)
Q Consensus 302 ~--~~------~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~---------------------- 351 (458)
. .. ...+. -.++. ....++|+|....++++-.| .|..=.|--+..|.
T Consensus 161 ~dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TTSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCccccCCCceEEEE-EeCCC-ccccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0 00 00000 11222 23579999975666665432 22222221122111
Q ss_pred -------eeEEEeCCCCeEEEEEcCC-------CCeEEEEecCCCCcEEEEeCCCceeeE---EE-eCCCCcEEEEEEcC
Q 012679 352 -------CLNSVDTGSQVCALLWNKN-------ERELLSSHGFTQNQLTLWKYPSMVKMA---EL-SGHTSRVLFMAQSP 413 (458)
Q Consensus 352 -------~~~~~~~~~~v~~~~~s~~-------~~~l~~~~g~~d~~i~iwd~~~~~~~~---~~-~~h~~~V~~l~~sp 413 (458)
++..+..+..+..+.|... +.++++ ....+.|....+.....+. .+ .....++..+++.|
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVA--DYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEe--cCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 2233344555677777643 344555 3346678777776443322 22 23445899999999
Q ss_pred CCCEEEEEeCCCcEE
Q 012679 414 DGCTVASAAADETLR 428 (458)
Q Consensus 414 dg~~l~s~s~Dg~i~ 428 (458)
||.+.++...+|.|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999999888888874
No 380
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.17 Score=47.48 Aligned_cols=209 Identities=15% Similarity=0.149 Sum_probs=117.3
Q ss_pred EEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC----CCcccEEEE
Q 012679 157 IALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG----GHRSRVGSL 232 (458)
Q Consensus 157 ~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~----~~~~~v~~l 232 (458)
--.++.|.-|+..+++.. .+.. .+.+.++..-..+..|+++. . -+.+++.+++..+..+.. ....+.+.+
T Consensus 43 DI~~~~i~r~~~~~g~~~-~~~~---p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~ 116 (307)
T COG3386 43 DILGGRIHRLDPETGKKR-VFPS---PGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDG 116 (307)
T ss_pred eCCCCeEEEecCCcCceE-EEEC---CCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence 335789999998877642 2222 33345555554555555443 3 366777665555332221 111233333
Q ss_pred Ee--CCCeEEEEeCC------------CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CCcEEEEeCC
Q 012679 233 AW--NNHILTTGGMD------------GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DNLLHIWDRS 297 (458)
Q Consensus 233 ~~--~~~~l~sg~~d------------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~ 297 (458)
.. +|.+. .++.. |.|+.+|. ....++.+..+-..-++|+||||++.|..+.. .+.|.-|++.
T Consensus 117 ~v~pdG~~w-fgt~~~~~~~~~~~~~~G~lyr~~p--~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 117 VVDPDGRIW-FGDMGYFDLGKSEERPTGSLYRVDP--DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred eEcCCCCEE-EeCCCccccCccccCCcceEEEEcC--CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 33 23333 33222 33444443 23335555566667789999999988877665 4788888876
Q ss_pred C--CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC-CeEEEEECCCCCeeEEEeCC-CCeEEEEEc-CCCC
Q 012679 298 M--ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD-RCIKFWNTHTGACLNSVDTG-SQVCALLWN-KNER 372 (458)
Q Consensus 298 ~--~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s-~~~~ 372 (458)
. ...... .....+....+..-.++...++.... ++. .+ +.|..|+.. |+.+..+..+ ..+++++|- ++.+
T Consensus 194 ~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG~lw~-~a~--~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~ 268 (307)
T COG3386 194 PATGPIGGR-RGFVDFDEEPGLPDGMAVDADGNLWV-AAV--WGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLN 268 (307)
T ss_pred cccCccCCc-ceEEEccCCCCCCCceEEeCCCCEEE-ecc--cCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcC
Confidence 3 111111 11222223445556677776544443 332 33 389999998 9999999887 678888875 3456
Q ss_pred eEEEEec
Q 012679 373 ELLSSHG 379 (458)
Q Consensus 373 ~l~~~~g 379 (458)
.|++++.
T Consensus 269 ~L~iTs~ 275 (307)
T COG3386 269 TLYITSA 275 (307)
T ss_pred EEEEEec
Confidence 6666543
No 381
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.25 E-value=0.22 Score=48.59 Aligned_cols=279 Identities=12% Similarity=0.170 Sum_probs=158.8
Q ss_pred CCeEEEEcCCEEEEEECCCCCee---eEEEecCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEeCCCc--e-----
Q 012679 152 SNVLAIALGSTVYLWDASDGTTS---ELVTVDDENGPVTSVNWAP-----DGRHIAIGLNNCQVQLWDSTAN--R----- 216 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~---~~~~~~~h~~~V~~v~~s~-----~g~~la~g~~dg~v~iwd~~~~--~----- 216 (458)
+.+++|+..|.++||+...+... .+.+.+ -..+|..|+.-. +...||+ -.-..+.||.+... .
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 56888999999999998654422 123322 357888887643 3345665 45558888877211 1
Q ss_pred --eeEEecCCCcccE-----EEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE
Q 012679 217 --QLRTLRGGHRSRV-----GSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG 285 (458)
Q Consensus 217 --~~~~~~~~~~~~v-----~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg 285 (458)
.+..+.. |.-.- .+..|. .+.|.+=+.||.+.+|+-+.-. ....+.+ .--...+.|.+....|+++
T Consensus 116 ~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 116 QYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-FSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred EEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-EEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 1222222 32221 222232 3688888999999999875422 1222322 2223457788888899999
Q ss_pred ECCCcEEEEeCCCCCC-------------------CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEE
Q 012679 286 GNDNLLHIWDRSMASS-------------------NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN 346 (458)
Q Consensus 286 ~~dg~i~iwd~~~~~~-------------------~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd 346 (458)
+.+..+..|....... .....|...+...--.|..+.++.....+++.| .+.+.+.+
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg----er~Lf~l~ 268 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG----ERSLFCLK 268 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe----cceEEEEc
Confidence 9988998887532111 011122222222222344444444445666664 56777777
Q ss_pred CCCCCeeEEEeCCCCeEEEE-EcC----CCC---eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE---cCCC
Q 012679 347 THTGACLNSVDTGSQVCALL-WNK----NER---ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ---SPDG 415 (458)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~-~s~----~~~---~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~---spdg 415 (458)
. +|.............+++ |.. .+. .+++ +..++++.||.-.+..--+.+ ...+| ++.. ..-.
T Consensus 269 ~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV--~t~t~~LlVy~d~~L~WsA~l--~~~PV-al~v~~~~~~~ 342 (418)
T PF14727_consen 269 D-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLV--GTHTGTLLVYEDTTLVWSAQL--PHVPV-ALSVANFNGLK 342 (418)
T ss_pred C-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEE--EecCCeEEEEeCCeEEEecCC--CCCCE-EEEecccCCCC
Confidence 6 466665555544433322 221 222 2444 447899999875544333333 22332 3333 2334
Q ss_pred CEEEEEeCCCcEEEEecCCCCcccccCCCC
Q 012679 416 CTVASAAADETLRFWNVFGAPQVISKSAPK 445 (458)
Q Consensus 416 ~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~ 445 (458)
..|++-+.+|.|.+--+-+.+.....+...
T Consensus 343 G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~~ 372 (418)
T PF14727_consen 343 GLIVSLSDEGQLSVSYLGTDPSLFQVPPLE 372 (418)
T ss_pred ceEEEEcCCCcEEEEEeCCCCccccCCCcc
Confidence 578889999999999998887766654444
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.013 Score=56.90 Aligned_cols=137 Identities=17% Similarity=0.238 Sum_probs=95.1
Q ss_pred EEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC-------EEEEEecCCeEEEEeCCCcee--eEEecC---C
Q 012679 157 IALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR-------HIAIGLNNCQVQLWDSTANRQ--LRTLRG---G 224 (458)
Q Consensus 157 ~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~-------~la~g~~dg~v~iwd~~~~~~--~~~~~~---~ 224 (458)
++....|+-.|++.|++..-..+ |.+ |+-+.+.|+.+ .-++|-.+..|.-||.+-... +..... .
T Consensus 352 ~~~~~~l~klDIE~GKIVeEWk~--~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGKIVEEWKF--EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred CCCcCcceeeecccceeeeEeec--cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 34446788999999998444444 444 88888888653 235678888999999864322 211111 1
Q ss_pred CcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 225 HRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 225 ~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
......|++- ...++++|+.+|.|++||- .+......+++...+|..+..+.||++|+..+ +..+.+-+..-
T Consensus 429 ~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 429 TKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred cccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence 2234556665 3579999999999999997 44444567888899999999999999887655 45677666543
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.13 E-value=0.19 Score=49.70 Aligned_cols=193 Identities=9% Similarity=0.055 Sum_probs=106.0
Q ss_pred CCCeEEEE-eCCC----cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC-----------cEEEEeCCC
Q 012679 235 NNHILTTG-GMDG----LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN-----------LLHIWDRSM 298 (458)
Q Consensus 235 ~~~~l~sg-~~dg----~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg-----------~i~iwd~~~ 298 (458)
++++++.+ +..| .|+++|+.++..+...+... ....+.|.+|++.|+....+. .|+.|.+.+
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt 211 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT 211 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC
Confidence 56666654 4444 59999999886543333321 122399999999887766443 377777766
Q ss_pred CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC-CeEEEEECCCC-----CeeEEEeCCCCeEEEEEcCCCC
Q 012679 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD-RCIKFWNTHTG-----ACLNSVDTGSQVCALLWNKNER 372 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-~~i~lwd~~~~-----~~~~~~~~~~~v~~~~~s~~~~ 372 (458)
.... ...+..-..+......+..++++..+++......+ ..+.+.|+..+ ...........+....-+..+.
T Consensus 212 ~~~~--d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~ 289 (414)
T PF02897_consen 212 PQSE--DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDR 289 (414)
T ss_dssp -GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTE
T ss_pred ChHh--CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCE
Confidence 5431 11222222222225678899999988876543344 67899999875 3333333333343333233444
Q ss_pred eEEEE-ecCCCCcEEEEeCCCcee---eEEEeCCCCc--EEEEEEcCCCCEEE-EEeCCC--cEEEEecC
Q 012679 373 ELLSS-HGFTQNQLTLWKYPSMVK---MAELSGHTSR--VLFMAQSPDGCTVA-SAAADE--TLRFWNVF 433 (458)
Q Consensus 373 ~l~~~-~g~~d~~i~iwd~~~~~~---~~~~~~h~~~--V~~l~~spdg~~l~-s~s~Dg--~i~iW~~~ 433 (458)
+++.+ .+...+.|...++..... ...+..|... +..+.. .+.+|+ ..-.++ .|+++++.
T Consensus 290 ~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 290 LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 44433 233456777778776552 3355556653 444544 344454 444444 57888888
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.11 E-value=0.086 Score=54.24 Aligned_cols=180 Identities=12% Similarity=0.108 Sum_probs=94.4
Q ss_pred CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe------cCC--eEEEEeCCCceeeEEecCC
Q 012679 153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL------NNC--QVQLWDSTANRQLRTLRGG 224 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~------~dg--~v~iwd~~~~~~~~~~~~~ 224 (458)
.++++. +|.+.-.+ .+...++-...+....+.+.+++|+|+.+|... .|+ .|.+++.. +.. ..+..+
T Consensus 322 ~~~~v~-~G~l~~~~--~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g 396 (591)
T PRK13616 322 GLHALV-DGSLVSVD--GQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG 396 (591)
T ss_pred cceEEE-CCeEEEec--CCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC
Confidence 344444 66665543 333333333323334688999999999887765 243 45555542 222 333321
Q ss_pred CcccEEEEEeC--CCeEEEEeC------------CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCc
Q 012679 225 HRSRVGSLAWN--NHILTTGGM------------DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNL 290 (458)
Q Consensus 225 ~~~~v~~l~~~--~~~l~sg~~------------dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~ 290 (458)
. ....-.|+ +..|++... .+.+.+.++..+.. .. ...+.|..+.|||||..+|... ++.
T Consensus 397 ~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~ 469 (591)
T PRK13616 397 H--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGK 469 (591)
T ss_pred C--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCE
Confidence 2 36666774 455555532 23444444443321 11 3356799999999999998766 477
Q ss_pred EEE---EeCCCCCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679 291 LHI---WDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH 348 (458)
Q Consensus 291 i~i---wd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~ 348 (458)
|++ -....+.. .... ...+. .-...+..+.|.+++. |++... ..+..+...++.
T Consensus 470 v~Va~Vvr~~~G~~-~l~~-~~~l~~~l~~~~~~l~W~~~~~-L~V~~~-~~~~~v~~v~vD 527 (591)
T PRK13616 470 VYLAVVEQTEDGQY-ALTN-PREVGPGLGDTAVSLDWRTGDS-LVVGRS-DPEHPVWYVNLD 527 (591)
T ss_pred EEEEEEEeCCCCce-eecc-cEEeecccCCccccceEecCCE-EEEEec-CCCCceEEEecC
Confidence 776 33233321 1111 12222 2233467899999766 443322 134445444444
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.10 E-value=0.029 Score=57.61 Aligned_cols=151 Identities=13% Similarity=0.107 Sum_probs=91.3
Q ss_pred cceEeEEEcCCCCEEEEEE------CCC--cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC---
Q 012679 268 QEVCGLKWSASGQQLASGG------NDN--LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG--- 336 (458)
Q Consensus 268 ~~v~~l~~spd~~~l~sg~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g--- 336 (458)
..+...+++|||+.+|..- .|. .|.+++. +... .....+ .....-.|+|++..+.+...+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~-----~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~ 420 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVA-----VQVLEG--HSLTRPSWSLDADAVWVVVDGNTV 420 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcc-----eeeecC--CCCCCceECCCCCceEEEecCcce
Confidence 4678899999999987765 244 4555554 2221 111222 237788999997766655321
Q ss_pred ------CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEE---EeCCCcee-e---EEEe-CC
Q 012679 337 ------GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTL---WKYPSMVK-M---AELS-GH 402 (458)
Q Consensus 337 ------~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~i---wd~~~~~~-~---~~~~-~h 402 (458)
...+.+.+.++..+.... .....|..+.|+|||..++... ++.|.+ -....++. + ..+. +-
T Consensus 421 ~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 421 VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGL 495 (591)
T ss_pred EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeeccc
Confidence 122344444555544433 3456799999999999999875 467776 44444541 1 1122 22
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 403 TSRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
...+..+.|..++.++ .+..++.-.+|.+.
T Consensus 496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred CCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 3446889999999855 55555555566654
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.41 Score=43.33 Aligned_cols=234 Identities=15% Similarity=0.136 Sum_probs=137.4
Q ss_pred EEEEEEcCC-CCEEEEEecCCe-EEEEeCCCceeeEEecC---CCcccEEEEEeCCCeEEEEeCC-----CcEEEEEccC
Q 012679 186 VTSVNWAPD-GRHIAIGLNNCQ-VQLWDSTANRQLRTLRG---GHRSRVGSLAWNNHILTTGGMD-----GLIINNDVRV 255 (458)
Q Consensus 186 V~~v~~s~~-g~~la~g~~dg~-v~iwd~~~~~~~~~~~~---~~~~~v~~l~~~~~~l~sg~~d-----g~i~vwd~~~ 255 (458)
-..|+++|. ..-++.+-.-|+ ..++|....+...++.. .|--.-.+.+-+|.+|...-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 346788884 445666666665 57889888776666543 1222223444467777776443 7899999997
Q ss_pred CCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE--------------------eCCCCCCCCcceeeeeec--c
Q 012679 256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW--------------------DRSMASSNSVTQWLHRLE--E 313 (458)
Q Consensus 256 ~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw--------------------d~~~~~~~~~~~~~~~~~--~ 313 (458)
.-..+..+..|.-.-..+.|.+||+.++.+.. -|..- |..++.... .+++. .
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~lie----kh~Lp~~l 223 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE----KHTLPASL 223 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchhh----hccCchhh
Confidence 66667777888888888999999999988643 33333 222222100 11111 2
Q ss_pred cccceeEEEecCCCCcEEEEeC-C-CCCCeEEEEECCCCCeeEEEeCC--------CCeEEEEEcCCCCeEEEEecCCCC
Q 012679 314 HTSAVKAIAWCPFQSNLLATGG-G-GGDRCIKFWNTHTGACLNSVDTG--------SQVCALLWNKNERELLSSHGFTQN 383 (458)
Q Consensus 314 h~~~v~~l~~~p~~~~ll~s~~-g-~~d~~i~lwd~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~g~~d~ 383 (458)
+.-.|..++..+++.-++.+-- | ..|.--.+=....++.+.-++.. ..|-+++.+.+...++.++ -..+
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTS-P~GN 302 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTS-PRGN 302 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEec-CCCC
Confidence 3455777777775443333210 0 01111222223345555544432 3367788887777776653 3567
Q ss_pred cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679 384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430 (458)
Q Consensus 384 ~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW 430 (458)
...+||..++..+..-.- ..+..++-- ..-++..+.+|.+.++
T Consensus 303 ~~vi~da~tG~vv~~a~l--~daaGva~~--~~gf~vssg~G~~~~~ 345 (366)
T COG3490 303 RAVIWDAATGAVVSEAAL--PDAAGVAAA--KGGFAVSSGQGRIIFY 345 (366)
T ss_pred eEEEEEcCCCcEEecccc--cccccceec--cCceEEecCCceEEec
Confidence 788999999988764421 112233333 3335666788888887
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.019 Score=55.85 Aligned_cols=137 Identities=13% Similarity=0.107 Sum_probs=93.4
Q ss_pred EEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---------CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccc-
Q 012679 199 AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---------NHILTTGGMDGLIINNDVRVRDH-IVETYRGHN- 267 (458)
Q Consensus 199 a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---------~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~- 267 (458)
..+.....++-.|++.|+.+..... +.. |.-+.+. ...-+.|-.+..|.-||++.... .+...++|.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 3455555788889999999998886 444 4444442 23345677788899999986654 222233332
Q ss_pred ---cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEE
Q 012679 268 ---QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF 344 (458)
Q Consensus 268 ---~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l 344 (458)
....|.+-..+ .++|+||.+|.|++||--.... ...+.+-..+|+.+..+.+|..+|+++ +..+.+
T Consensus 428 ~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~A------KTAlPgLG~~I~hVdvtadGKwil~Tc----~tyLlL 496 (644)
T KOG2395|consen 428 STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRA------KTALPGLGDAIKHVDVTADGKWILATC----KTYLLL 496 (644)
T ss_pred ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhh------hhcccccCCceeeEEeeccCcEEEEec----ccEEEE
Confidence 23444444444 4899999999999999633222 334566788999999999999999985 677777
Q ss_pred EECC
Q 012679 345 WNTH 348 (458)
Q Consensus 345 wd~~ 348 (458)
.++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 7754
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.73 E-value=0.084 Score=52.31 Aligned_cols=152 Identities=16% Similarity=0.292 Sum_probs=88.9
Q ss_pred ccEEEEEe-CCCeEEEEe---CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC----CCEEEEEECCCcEEEEeCCC
Q 012679 227 SRVGSLAW-NNHILTTGG---MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS----GQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 227 ~~v~~l~~-~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd----~~~l~sg~~dg~i~iwd~~~ 298 (458)
.++..++| ||+.++-.. .+|.+++=|- ...|.-..|+++.|.|- ...|++.-....|.||.+..
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds--------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS--------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc--------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 57889999 676544332 2344333222 11233456999999984 33455556678999999864
Q ss_pred CCCCCcceeeeeeccc-cc----ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC--CeeEEEeCCCCeEEEEEcCCC
Q 012679 299 ASSNSVTQWLHRLEEH-TS----AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG--ACLNSVDTGSQVCALLWNKNE 371 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~h-~~----~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~--~~~~~~~~~~~v~~~~~s~~~ 371 (458)
..... .+++.....+ .. --..+.|+|. ..+|++-. ....-.+++++.. .....++..+-|.+.+|.+||
T Consensus 92 s~~e~-~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT--~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 92 STTER-NKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLT--ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred Ccccc-ccceeeeeeeccCCcccCCCcccccCC-CceEEEEe--cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 32211 1112221111 11 1246789996 44444432 2323345555443 344556777889999999999
Q ss_pred CeEEEEecCCCCcEEEEeCC
Q 012679 372 RELLSSHGFTQNQLTLWKYP 391 (458)
Q Consensus 372 ~~l~~~~g~~d~~i~iwd~~ 391 (458)
..|+++.|. .=.-+|||-.
T Consensus 168 ~RLVVAvGS-sLHSyiWd~~ 186 (671)
T PF15390_consen 168 QRLVVAVGS-SLHSYIWDSA 186 (671)
T ss_pred CEEEEEeCC-eEEEEEecCc
Confidence 999998773 3456778753
No 389
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.70 E-value=0.0061 Score=39.27 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ 217 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~ 217 (458)
...|.+++|+|...+||.|+.+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4443
No 390
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.70 E-value=0.61 Score=44.63 Aligned_cols=225 Identities=14% Similarity=0.152 Sum_probs=109.3
Q ss_pred EEcCCCCEEEEEec-CC--eEEEEeCCCceeeEEecCCCccc-EEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcc
Q 012679 190 NWAPDGRHIAIGLN-NC--QVQLWDSTANRQLRTLRGGHRSR-VGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRG 265 (458)
Q Consensus 190 ~~s~~g~~la~g~~-dg--~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 265 (458)
+|.+||+.|+.++. +| .+.+.|+.+++..+.-.+..... -.+++-..+.++-......|.-.|+++.+. ...+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEEC
Confidence 56788987766654 44 67777999988776555422222 234444556665555556788888887664 233333
Q ss_pred cccceEeEEE--cCCCCEEEEEEC----------------------CCcEEEEeCCCCCCCCcceeeeeecccccceeEE
Q 012679 266 HNQEVCGLKW--SASGQQLASGGN----------------------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI 321 (458)
Q Consensus 266 h~~~v~~l~~--spd~~~l~sg~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 321 (458)
....+-...| +.|+..++-.-. ...|.--|+.+++. ..+..-...+..+
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~-------~~v~~~~~wlgH~ 193 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER-------KVVFEDTDWLGHV 193 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E-------EEEEEESS-EEEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce-------eEEEecCccccCc
Confidence 3444443445 345665543211 12344445555432 2333345567788
Q ss_pred EecCCCCcEEEEeC-CCCCCe-EEEEECCC-CCeeEEEeC---CCCeEEEEEcCCCCeEEEEec---CCCCcEEEEeCCC
Q 012679 322 AWCPFQSNLLATGG-GGGDRC-IKFWNTHT-GACLNSVDT---GSQVCALLWNKNERELLSSHG---FTQNQLTLWKYPS 392 (458)
Q Consensus 322 ~~~p~~~~ll~s~~-g~~d~~-i~lwd~~~-~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g---~~d~~i~iwd~~~ 392 (458)
.|+|..+.+++-|. |..+.. -|+|-+++ |.....+.. ...+..=-|.++|..|.--.. ..+..|.-++..+
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 99998888877653 333432 36675543 332232221 223555679999988875432 2334577788888
Q ss_pred ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC
Q 012679 393 MVKMAELSGHTSRVLFMAQSPDGCTVASAAAD 424 (458)
Q Consensus 393 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 424 (458)
++...... ......+-.++||+++|-=+.|
T Consensus 274 ~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 274 GERRRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp --EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred CCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 76543222 2245577778999988755555
No 391
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.024 Score=59.90 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=91.4
Q ss_pred CCEEEEEEcCCCCEEEEEecC--CeEEEEeCCCceeeE-----EecC-----CCcccEEEEEeCC---CeEEEEeCCCcE
Q 012679 184 GPVTSVNWAPDGRHIAIGLNN--CQVQLWDSTANRQLR-----TLRG-----GHRSRVGSLAWNN---HILTTGGMDGLI 248 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~d--g~v~iwd~~~~~~~~-----~~~~-----~~~~~v~~l~~~~---~~l~sg~~dg~i 248 (458)
-++..+...+|+...++.... -.|..||+++-..-. -+.. ....-..++.|++ ...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345666667787766554333 378899986543211 1110 1234456788875 456677788888
Q ss_pred EEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679 249 INNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS 328 (458)
Q Consensus 249 ~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 328 (458)
.+..+......+..+ .....+++++|+|.|++++.|-+.|++.-|........... ..... ....|.+|+|-....
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip--~Pp~~-e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIP--EPPVE-ENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeeccc--CCCcC-CCcceeEEEEeccee
Confidence 887765433322332 23567899999999999999999999998875543211100 00111 157899999988666
Q ss_pred cEEEEeC
Q 012679 329 NLLATGG 335 (458)
Q Consensus 329 ~ll~s~~ 335 (458)
.+++-+.
T Consensus 257 flvvy~n 263 (1405)
T KOG3630|consen 257 FLVVYGN 263 (1405)
T ss_pred EEEEecc
Confidence 6655543
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.69 E-value=0.004 Score=53.99 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=90.0
Q ss_pred CCCCCceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC
Q 012679 125 IPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN 204 (458)
Q Consensus 125 i~~~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d 204 (458)
|...|..-+.+.++.++.+ ..+.+-+.++.|.-+++...+...... ..|...-.-+ .-+..+++|+.+
T Consensus 12 ~dk~~~~d~i~~~~t~~~~--------~~l~~~sa~~~v~~~~~~k~k~s~rse-~~~~e~~~v~---~~~~~~~vG~~d 79 (238)
T KOG2444|consen 12 IDKHPSTDLIAAGLTDGHL--------HLLRATSADGLVRERKVRKHKESCRSE-RFIDEGQRVV---TASAKLMVGTSD 79 (238)
T ss_pred eeccchhhhhhhcchhhhh--------hhhccccCCcccccchhhhhhhhhhhh-hhhhcceeec---ccCceEEeeccc
Confidence 3334444444445554433 445666777777777665433211111 1111111112 235579999999
Q ss_pred CeEEEEeCCCceeeEEecCCCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc-cceEeEEEcCCCC
Q 012679 205 CQVQLWDSTANRQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVETYRGHN-QEVCGLKWSASGQ 280 (458)
Q Consensus 205 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~l~~spd~~ 280 (458)
|.|.+|..............-...|-++-. ++.+..+++.+|.|+.|++.-... +.....|. .++..+..+..++
T Consensus 80 g~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~e~~ivv~sd~ 158 (238)
T KOG2444|consen 80 GAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESGEELIVVGSDE 158 (238)
T ss_pred ceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce-eeeeccccCCCcceeEEecCCc
Confidence 999999876222211111112233333333 346889999999999999875543 44555565 4555555555666
Q ss_pred EEEEE--ECCCcEEEEeCCCC
Q 012679 281 QLASG--GNDNLLHIWDRSMA 299 (458)
Q Consensus 281 ~l~sg--~~dg~i~iwd~~~~ 299 (458)
.++++ |.|..++.|++...
T Consensus 159 ~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 159 FLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eEEeeccccchhhhhcchhhh
Confidence 66666 66677777776543
No 393
>PHA03098 kelch-like protein; Provisional
Probab=96.69 E-value=0.12 Score=53.02 Aligned_cols=179 Identities=13% Similarity=0.140 Sum_probs=90.4
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEeCCCceeeE--EecCCCcccEEEEEe
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-----CQVQLWDSTANRQLR--TLRGGHRSRVGSLAW 234 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-----g~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~ 234 (458)
.++.||..+.++..+..+.........+.+ ++...+.|+.+ ..+..||..+++-.. .+.. ..........
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~~~~ 388 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-PRYNPCVVNV 388 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-CCccceEEEE
Confidence 688899888887555444322222233332 67777888765 357788887665322 1221 1112233445
Q ss_pred CCCeEEEEeCC------CcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCC--------cEEEEeCCCC
Q 012679 235 NNHILTTGGMD------GLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDN--------LLHIWDRSMA 299 (458)
Q Consensus 235 ~~~~l~sg~~d------g~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg--------~i~iwd~~~~ 299 (458)
++.+.+.|+.+ ..+..||+.+..... ..+.........+ ..++..++.||.++ .+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI--YHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE--EECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 77888888742 357888987654211 1111111111112 23566777776432 3888888766
Q ss_pred CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---CCeEEEEECCCCCe
Q 012679 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---DRCIKFWNTHTGAC 352 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---d~~i~lwd~~~~~~ 352 (458)
+-... ..+.........+.+ ++.+++.||... .+.+.+||..+.+-
T Consensus 467 ~W~~~----~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 467 KWTEL----SSLNFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ceeeC----CCCCcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 53211 111111111111222 456666664211 24677788776543
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.0063 Score=63.70 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=76.5
Q ss_pred CcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCc
Q 012679 225 HRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304 (458)
Q Consensus 225 ~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~ 304 (458)
....+.+.+.-+..++.|+..|.+...|+...-.....-..-.++|++++|+.+|..++.|-.+|.|.+||......
T Consensus 88 ~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~--- 164 (1206)
T KOG2079|consen 88 IAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI--- 164 (1206)
T ss_pred CCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc---
Confidence 33455555666678899999999999998754221122223467899999999999999999999999999988776
Q ss_pred ceeeeeecccccceeEEE---ecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679 305 TQWLHRLEEHTSAVKAIA---WCPFQSNLLATGGGGGDRCIKFWNT 347 (458)
Q Consensus 305 ~~~~~~~~~h~~~v~~l~---~~p~~~~ll~s~~g~~d~~i~lwd~ 347 (458)
++.+..|..++.++- +..++. .+.++. ..|. +|.+
T Consensus 165 ---l~~i~e~~ap~t~vi~v~~t~~nS-~llt~D--~~Gs--f~~l 202 (1206)
T KOG2079|consen 165 ---LKVITEHGAPVTGVIFVGRTSQNS-KLLTSD--TGGS--FWKL 202 (1206)
T ss_pred ---eeeeeecCCccceEEEEEEeCCCc-EEEEcc--CCCc--eEEE
Confidence 666666666555443 334333 444432 3333 6654
No 395
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.56 E-value=0.57 Score=42.45 Aligned_cols=199 Identities=12% Similarity=0.087 Sum_probs=117.7
Q ss_pred ceeeeCCCCCCccccceeec-cCCCeEEEE-cC--CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC
Q 012679 130 ERTLDAPDLVDDYYLNLLDW-GSSNVLAIA-LG--STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC 205 (458)
Q Consensus 130 ~~~l~~~~~~~d~~~~~~~~-~~~~~la~~-~d--~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg 205 (458)
.+++..-......+..-+.+ +.+.++-++ .- ..|+.+|+.+|+......++.. ----.++.. +++.....-.++
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~-~d~l~qLTWk~~ 110 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITIL-GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEE-TTEEEEEESSSS
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEE-CCEEEEEEecCC
Confidence 34555433344456667777 444443333 32 3899999999998666666532 122233333 344555566788
Q ss_pred eEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEc--cc---ccceEeEEEcCCCC
Q 012679 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYR--GH---NQEVCGLKWSASGQ 280 (458)
Q Consensus 206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--~h---~~~v~~l~~spd~~ 280 (458)
...+||..+.+.+.++. ....=..++.++..|+.......|+++|..+-.. ...+. .. -..++-+.|- +|.
T Consensus 111 ~~f~yd~~tl~~~~~~~--y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFP--YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEEEETTTTEEEEEEE---SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEEE-TTE
T ss_pred eEEEEccccceEEEEEe--cCCcceEEEcCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEEE-cCE
Confidence 99999999999999887 5567788889998888888889999999876543 22222 11 1245567775 666
Q ss_pred EEEEEECCCcEEEEeCCCCCCCCccee---eeee------cccccceeEEEecCCCCcEEEEe
Q 012679 281 QLASGGNDNLLHIWDRSMASSNSVTQW---LHRL------EEHTSAVKAIAWCPFQSNLLATG 334 (458)
Q Consensus 281 ~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~------~~h~~~v~~l~~~p~~~~ll~s~ 334 (458)
..|=.=....|...|..++........ .... .....-.+.|||.|....++++|
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 666555566777778777765211000 0000 01134578999999999999987
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.53 E-value=0.62 Score=42.57 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=85.3
Q ss_pred CEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEE-ccCCCeeE
Q 012679 185 PVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINND-VRVRDHIV 260 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd-~~~~~~~~ 260 (458)
.+.+.+++++|+.+|... .++.-.||-...+....... ....+..-+|+ +...+....+....++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 689999999999887665 23333333333444333332 12256666774 45555555555555553 22222211
Q ss_pred EEEc--ccccceEeEEEcCCCCEEEEEE---CCCcEEEEeCCCCCCC---CcceeeeeecccccceeEEEecCCCCcEEE
Q 012679 261 ETYR--GHNQEVCGLKWSASGQQLASGG---NDNLLHIWDRSMASSN---SVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332 (458)
Q Consensus 261 ~~~~--~h~~~v~~l~~spd~~~l~sg~---~dg~i~iwd~~~~~~~---~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~ 332 (458)
.... .-...|..+.+||||..+|... .++.|.+=-+...... ....+..........+..++|.+++..+++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 1121 1122899999999999987765 3577776654322221 111122222234568899999997554444
Q ss_pred EeCCCCCCeEEE
Q 012679 333 TGGGGGDRCIKF 344 (458)
Q Consensus 333 s~~g~~d~~i~l 344 (458)
... .+..+..
T Consensus 183 ~~~--~~~~~~~ 192 (253)
T PF10647_consen 183 GRS--AGGPVVR 192 (253)
T ss_pred eCC--CCCceeE
Confidence 332 4443333
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.53 E-value=0.011 Score=38.01 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=30.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679 403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438 (458)
Q Consensus 403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~ 438 (458)
...|..++|+|...+||.++.||.|.++++ +.+.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999999999999999999999 44443
No 398
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.64 Score=42.32 Aligned_cols=150 Identities=15% Similarity=0.010 Sum_probs=97.1
Q ss_pred eeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---eeEEecC
Q 012679 147 LDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---QLRTLRG 223 (458)
Q Consensus 147 ~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~~~~~~~ 223 (458)
+.++.+....+-.+.-++|.|+.+.....+..+-...+.-.++.. .|++..++..|.-+.+.|+.+.. ....+..
T Consensus 92 v~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~ 169 (370)
T COG5276 92 VRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL 169 (370)
T ss_pred eEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeecc
Confidence 445556667777778899999987664333333222344455555 58888888866667888886543 3333332
Q ss_pred CCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 224 GHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 224 ~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
.......++.+|++-..+..|+-+.+-|+.....++..-. .....+.++..+++-.+++... --+.+-|....+.
T Consensus 170 -~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ss 245 (370)
T COG5276 170 -PGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSS 245 (370)
T ss_pred -CCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCCC
Confidence 3444467788899999999999999999987664332211 1223677777777666665543 3477777776654
No 399
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.49 E-value=0.95 Score=48.11 Aligned_cols=227 Identities=12% Similarity=0.080 Sum_probs=117.1
Q ss_pred CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC--C------EEEEEEc----------------CCCCEEEEEecCCe
Q 012679 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENG--P------VTSVNWA----------------PDGRHIAIGLNNCQ 206 (458)
Q Consensus 151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~--~------V~~v~~s----------------~~g~~la~g~~dg~ 206 (458)
.+.++.++.++.|+-.|..+|+. +.++..... . ...+++. ..+..+++++.||.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~--lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKE--KWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcE--EEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 35677777789999999999987 444332111 0 1122221 13458889999999
Q ss_pred EEEEeCCCceeeEEecCCCcccEE----------------E-EEeCCCeEEEEeC----------CCcEEEEEccCCCee
Q 012679 207 VQLWDSTANRQLRTLRGGHRSRVG----------------S-LAWNNHILTTGGM----------DGLIINNDVRVRDHI 259 (458)
Q Consensus 207 v~iwd~~~~~~~~~~~~~~~~~v~----------------~-l~~~~~~l~sg~~----------dg~i~vwd~~~~~~~ 259 (458)
|.-.|.++|+.+..+.. ...|. + -...+..++.|+. +|.|+-+|.++++..
T Consensus 272 LiALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 272 LIALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEEEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999999999877642 11110 0 0112456666643 688999999998865
Q ss_pred EEEEcccccceEeEEEcCCCCEEEEEECCC-cEEEEeCCCCCCCCcceeeeeecccccc-eeEEEecCCCCcEEEEeCCC
Q 012679 260 VETYRGHNQEVCGLKWSASGQQLASGGNDN-LLHIWDRSMASSNSVTQWLHRLEEHTSA-VKAIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 260 ~~~~~~h~~~v~~l~~spd~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~ll~s~~g~ 337 (458)
-....+.... ... -+.+.....++.+. ...-+|.+.+.. ..-.+...+ ...-.-.| +.++
T Consensus 350 W~~~~g~p~~-~~~--~~~g~~~~~gg~n~W~~~s~D~~~glv-------y~ptGn~~pd~~g~~r~~-~~n~------- 411 (764)
T TIGR03074 350 WAWDPGNPDP-TAP--PAPGETYTRNTPNSWSVASYDEKLGLV-------YLPMGNQTPDQWGGDRTP-ADEK------- 411 (764)
T ss_pred eEEecCCCCc-ccC--CCCCCEeccCCCCccCceEEcCCCCeE-------EEeCCCccccccCCcccc-Cccc-------
Confidence 4433222111 100 01233222222111 222233222211 000010000 00000001 0111
Q ss_pred CCCeEEEEECCCCCeeEEEeC-CC---------CeEEEEEcC-CCC-eEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679 338 GDRCIKFWNTHTGACLNSVDT-GS---------QVCALLWNK-NER-ELLSSHGFTQNQLTLWKYPSMVKMAEL 399 (458)
Q Consensus 338 ~d~~i~lwd~~~~~~~~~~~~-~~---------~v~~~~~s~-~~~-~l~~~~g~~d~~i~iwd~~~~~~~~~~ 399 (458)
..+.|.-.|.+||+....++. +. +..-+.+.. +++ .=++..+..+|.+.++|-.+++.+...
T Consensus 412 y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 412 YSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 345677788888888776654 22 222222333 453 112333678999999999999887654
No 400
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.32 E-value=0.0059 Score=52.97 Aligned_cols=102 Identities=15% Similarity=0.126 Sum_probs=66.3
Q ss_pred EEEEeCCCCCCeEEEEECCCC-CeeEEEeCC-CCeE-EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC-Cc
Q 012679 330 LLATGGGGGDRCIKFWNTHTG-ACLNSVDTG-SQVC-ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT-SR 405 (458)
Q Consensus 330 ll~s~~g~~d~~i~lwd~~~~-~~~~~~~~~-~~v~-~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~-~~ 405 (458)
-+++|+ .+|.|++|+..-. .....+... .++- .+.--.++.+..+ +..+|.|+.|+..-.+.+.....|. .+
T Consensus 72 ~~~vG~--~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~--~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 72 KLMVGT--SDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCV--GAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred eEEeec--ccceEEEecCCccchHHHhhhcccccceeccccccccceeEE--eccCCceeeeccccCceeeeeccccCCC
Confidence 344444 8999999987621 111111111 1222 2222222333444 6689999999999988888887787 66
Q ss_pred EEEEEEcCCCCEEEEE--eCCCcEEEEecCCC
Q 012679 406 VLFMAQSPDGCTVASA--AADETLRFWNVFGA 435 (458)
Q Consensus 406 V~~l~~spdg~~l~s~--s~Dg~i~iW~~~~~ 435 (458)
+..+..+..+++|+.+ |.|..+++|++..-
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 7777777777888888 88888999988643
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.32 E-value=0.8 Score=41.51 Aligned_cols=182 Identities=12% Similarity=0.129 Sum_probs=112.8
Q ss_pred CEEEEEEcCCCCEEEEEecCC--eEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679 185 PVTSVNWAPDGRHIAIGLNNC--QVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVE 261 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~ 261 (458)
....+.|..+|.++-+.+.-| .|+.+|+.+++.+....-...----.++. ++.+..-.-.++...+||..+-+. +.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~-~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK-IG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEE-EE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceE-EE
Confidence 345677777888777777666 79999999999877665322222223333 445555566788999999987654 44
Q ss_pred EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccc---cceeEEEecCCCCcEEEEeCCCC
Q 012679 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT---SAVKAIAWCPFQSNLLATGGGGG 338 (458)
Q Consensus 262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~ll~s~~g~~ 338 (458)
.+. ..++=.+++ .|++.|+.......|+++|..+...... + ...... ..++.+.|-. +.+.|-.= .
T Consensus 125 ~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~---i-~V~~~g~pv~~LNELE~i~--G~IyANVW--~ 193 (264)
T PF05096_consen 125 TFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT---I-QVTDNGRPVSNLNELEYIN--GKIYANVW--Q 193 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE---E-E-EETTEE---EEEEEEET--TEEEEEET--T
T ss_pred EEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEE---E-EEEECCEECCCcEeEEEEc--CEEEEEeC--C
Confidence 443 234566676 4677777777778999999876654211 1 111122 2355566653 55666543 5
Q ss_pred CCeEEEEECCCCCeeEEEeC----------------CCCeEEEEEcCCCCeEEEEe
Q 012679 339 DRCIKFWNTHTGACLNSVDT----------------GSQVCALLWNKNERELLSSH 378 (458)
Q Consensus 339 d~~i~lwd~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~ 378 (458)
...|...|..+|+.+..++. ..-.+.++|+|....++++.
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 67888899999998887742 12378999999998888863
No 402
>PRK10115 protease 2; Provisional
Probab=96.31 E-value=1.9 Score=45.67 Aligned_cols=240 Identities=9% Similarity=0.046 Sum_probs=118.3
Q ss_pred CEEEEEEcCCCCEEEEEecCC-----eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeC-C-----CcEEEE
Q 012679 185 PVTSVNWAPDGRHIAIGLNNC-----QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGM-D-----GLIINN 251 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~-d-----g~i~vw 251 (458)
.+..+.|+|||++|+.+...+ .|++.|+.+++.+..... ... ..++| +++.|+.... + ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-NVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-Ccc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 467788999999998875432 688999988864433221 111 45888 4555544432 2 367888
Q ss_pred EccCCCe-eEEEEcccccceE-eEEEcCCCCEEEEEEC---CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679 252 DVRVRDH-IVETYRGHNQEVC-GLKWSASGQQLASGGN---DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326 (458)
Q Consensus 252 d~~~~~~-~~~~~~~h~~~v~-~l~~spd~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 326 (458)
++.++.. -...+........ .+..+.++++++..+. ++.+.+++....... . ...+.........+. +..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~--~--~~~~~~~~~~~~~~~-~~~ 279 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE--P--FVFLPRRKDHEYSLD-HYQ 279 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC--c--eEEEECCCCCEEEEE-eCC
Confidence 8877631 1223332222222 3334558887765443 457888885443221 0 111111112222222 222
Q ss_pred CCcEEEEeCCCCCCeEEEEECC-CCCeeEEEeC--CCCeEEEEEcCCCCeEEEEecCCCCc--EEEEeCCCceeeEEEe-
Q 012679 327 QSNLLATGGGGGDRCIKFWNTH-TGACLNSVDT--GSQVCALLWNKNERELLSSHGFTQNQ--LTLWKYPSMVKMAELS- 400 (458)
Q Consensus 327 ~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~d~~--i~iwd~~~~~~~~~~~- 400 (458)
+..++.+..+.....|...++. .++....+.. ...+..+.+. ++.|+.. ...++. +.+++.... .+..+.
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~~~~~~-~~~~l~~ 355 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQINRKTR-EVIGIAF 355 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEEcCCCC-ceEEecC
Confidence 2333334322233445555655 2332223333 2357777777 3344443 334554 444554332 333333
Q ss_pred CCCCcEEEEEEc--CCC-CEEEEEeC---CCcEEEEecCCCC
Q 012679 401 GHTSRVLFMAQS--PDG-CTVASAAA---DETLRFWNVFGAP 436 (458)
Q Consensus 401 ~h~~~V~~l~~s--pdg-~~l~s~s~---Dg~i~iW~~~~~~ 436 (458)
.....+..+.++ +++ .++++.+. -+.+..+|+.++.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 356 DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 222233334444 343 34444443 3667778876543
No 403
>PHA03098 kelch-like protein; Provisional
Probab=96.25 E-value=0.22 Score=51.12 Aligned_cols=191 Identities=10% Similarity=0.124 Sum_probs=91.5
Q ss_pred EEEEeCCCeEEEEeCCC------cEEEEEccCCCeeEEEEcc---cccceEeEEEcCCCCEEEEEECC-----CcEEEEe
Q 012679 230 GSLAWNNHILTTGGMDG------LIINNDVRVRDHIVETYRG---HNQEVCGLKWSASGQQLASGGND-----NLLHIWD 295 (458)
Q Consensus 230 ~~l~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~~---h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd 295 (458)
.++..++.+++.|+.++ .+..||..+... ..+.. .......+. -+++.++.||.+ ..+..||
T Consensus 289 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd 364 (534)
T PHA03098 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW--NKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWK 364 (534)
T ss_pred eEEEECCEEEEECCCcCCCCeeccEEEEeCCCCee--eECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEc
Confidence 45556777778887543 567788776543 22211 111112222 267778888865 3477788
Q ss_pred CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC----CeEEEEECCCCCeeEEEeCCCC--eEEEEEcC
Q 012679 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD----RCIKFWNTHTGACLNSVDTGSQ--VCALLWNK 369 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d----~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~ 369 (458)
..+...... ..+...... .+++. .++.+++.||-..+ ..+..||..+++....-..... -.+++. .
T Consensus 365 ~~~~~W~~~----~~lp~~r~~-~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~ 436 (534)
T PHA03098 365 PGESKWREE----PPLIFPRYN-PCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-H 436 (534)
T ss_pred CCCCceeeC----CCcCcCCcc-ceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-E
Confidence 776543211 111110111 11222 24567776641111 4688899887654332211111 112222 2
Q ss_pred CCCeEEEEecCCC-------CcEEEEeCCCce--eeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCC
Q 012679 370 NERELLSSHGFTQ-------NQLTLWKYPSMV--KMAELSGHTSRVLFMAQSPDGCTVASAAAD-----ETLRFWNVFGA 435 (458)
Q Consensus 370 ~~~~l~~~~g~~d-------~~i~iwd~~~~~--~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~i~iW~~~~~ 435 (458)
++ .+++.+|... ..+.+||..+.+ .+..+.........+.+ ++..++.||.+ ..|.+||....
T Consensus 437 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 DG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CC-EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 33 4444444322 237888876543 22222111111112222 67777777764 46777876654
No 404
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.21 E-value=1.1 Score=41.97 Aligned_cols=234 Identities=10% Similarity=0.154 Sum_probs=108.9
Q ss_pred ccccceeeccCCCeEEEEcCCEEEEEECCCCC-eeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDGT-TSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 141 d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~-~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
++.++.+++..+..++++..+.|..- .+.|+ ...+..-..-.+....+....++..++ ++..|.|..= ...++.-.
T Consensus 61 ~~~l~~I~f~~~~g~ivG~~g~ll~T-~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 61 DYHLNSISFDGNEGWIVGEPGLLLHT-TDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp --EEEEEEEETTEEEEEEETTEEEEE-SSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred eeeEEEEEecCCceEEEcCCceEEEe-cCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCee
Confidence 46678888877777777777754433 33343 333221111123344444444443333 4455544332 23333333
Q ss_pred EecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 220 TLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
.+...-...+..+.. ++.+++++.......-||.-...- ...-..-...|..+.|.|++.+.+.+ ..|.|+.=+..
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 333224566777665 567777776655566777643222 12222346789999999998876655 88888887721
Q ss_pred CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe----CCCCeEEEEEcCCCCe
Q 012679 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNKNERE 373 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~ 373 (458)
..... -.+.+..+......+..++|.++ ..+.++|+ .|.+ +.....|+.=+... ....+..+.|..+.+-
T Consensus 216 ~~~~~-w~~~~~~~~~~~~~~ld~a~~~~-~~~wa~gg---~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~g 289 (302)
T PF14870_consen 216 DDGET-WSEPIIPIKTNGYGILDLAYRPP-NEIWAVGG---SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKG 289 (302)
T ss_dssp TEEEE-E---B-TTSS--S-EEEEEESSS-S-EEEEES---TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEE
T ss_pred CCccc-cccccCCcccCceeeEEEEecCC-CCEEEEeC---CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCce
Confidence 11100 00001111122334789999985 66666664 4443 33444555433332 2456888999877777
Q ss_pred EEEEecCCCCcEEEE
Q 012679 374 LLSSHGFTQNQLTLW 388 (458)
Q Consensus 374 l~~~~g~~d~~i~iw 388 (458)
++. | .+|.|.-|
T Consensus 290 f~l--G-~~G~ll~~ 301 (302)
T PF14870_consen 290 FVL--G-QDGVLLRY 301 (302)
T ss_dssp EEE----STTEEEEE
T ss_pred EEE--C-CCcEEEEe
Confidence 776 4 56666544
No 405
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.83 E-value=0.015 Score=59.79 Aligned_cols=159 Identities=19% Similarity=0.313 Sum_probs=92.1
Q ss_pred CEEEEEECC--CCCeeeEEE---ecCCCCCEEEEEEcC---CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEE
Q 012679 161 STVYLWDAS--DGTTSELVT---VDDENGPVTSVNWAP---DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSL 232 (458)
Q Consensus 161 ~~v~iwd~~--~~~~~~~~~---~~~h~~~V~~v~~s~---~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 232 (458)
|.+.||+++ .|++.+... .......+.-|.|.| +.-++..+..+|.|++....+... ..+.+ |..++..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs-Hs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRS-HSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHh-cCCCcccH
Confidence 678889875 455533222 222345566777776 667888888999998877655443 33344 88877777
Q ss_pred EeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee
Q 012679 233 AWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311 (458)
Q Consensus 233 ~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 311 (458)
++- ..++...+ .+|||+.||.++.||.++.|.+.-... ....+++..
T Consensus 231 a~~~~g~~~l~~-------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~-~~~rclhew 278 (1283)
T KOG1916|consen 231 AFFAEGVLKLAS-------------------------------LSPDGTVFAWAISDGSVGFYQIYITGK-IVHRCLHEW 278 (1283)
T ss_pred HHHhhchhhhee-------------------------------eCCCCcEEEEeecCCccceeeeeeecc-ccHhhhhcc
Confidence 661 11111110 688999999999999888887543322 112234555
Q ss_pred ccccc-ceeEEEecCC-------CCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679 312 EEHTS-AVKAIAWCPF-------QSNLLATGGGGGDRCIKFWNTHTGACL 353 (458)
Q Consensus 312 ~~h~~-~v~~l~~~p~-------~~~ll~s~~g~~d~~i~lwd~~~~~~~ 353 (458)
+.|.. +-.|.-++.+ +.+.+...+....+.+++|.....+|+
T Consensus 279 kphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 279 KPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 56652 2222222221 112222222236677999998888777
No 406
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.70 E-value=0.56 Score=48.10 Aligned_cols=120 Identities=11% Similarity=0.230 Sum_probs=77.7
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEeCCCcEEEEE
Q 012679 177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDGLIINND 252 (458)
Q Consensus 177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~~dg~i~vwd 252 (458)
.++...-...+-+.-+.-++..++-.....+.|||...+.....-.-.....|.++.| ++..+++.+....|.+|-
T Consensus 23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3444334455666666656655554455589999998887544433236889999999 477888888888888875
Q ss_pred cc-----CCC---eeEEE--Ecccc-cceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679 253 VR-----VRD---HIVET--YRGHN-QEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 253 ~~-----~~~---~~~~~--~~~h~-~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~ 298 (458)
-. ... ..++. +..|+ .+|.+..|.++|.+++.+| +.+.|+|-..
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~~ 157 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKWL 157 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCCc
Confidence 32 111 11221 23444 6799999999997766554 5788887443
No 407
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.67 E-value=1.4 Score=44.17 Aligned_cols=170 Identities=14% Similarity=0.236 Sum_probs=99.4
Q ss_pred CCEEEEEEcCCCCEEEEE-e--cCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC------CeEEEEeCCCcEEEEEcc
Q 012679 184 GPVTSVNWAPDGRHIAIG-L--NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN------HILTTGGMDGLIINNDVR 254 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g-~--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~------~~l~sg~~dg~i~vwd~~ 254 (458)
.+|..++|. ||+.++-. - .+|.+++=| .+.+..|. .|..++|.+ ..|++.-....|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE-----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE-----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc-----eeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 468899997 56554433 1 344444322 23344443 588899942 356666777899999885
Q ss_pred CCC-----eeEEEEccc----ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679 255 VRD-----HIVETYRGH----NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325 (458)
Q Consensus 255 ~~~-----~~~~~~~~h----~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 325 (458)
-.. .++...... .---.++.|+|....|++-.....-.+++++..... ....+ ...+-|.|.+|.+
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr----VkaDi-~~~G~IhCACWT~ 165 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR----VKADI-KTSGLIHCACWTK 165 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce----EEEec-cCCceEEEEEecC
Confidence 221 111111111 111246789999999988776655556666655431 12223 3467899999999
Q ss_pred CCCcEEEEeCCCCCCeEEEEECCCCC-----eeEEEeCCCCeEEEEEcC
Q 012679 326 FQSNLLATGGGGGDRCIKFWNTHTGA-----CLNSVDTGSQVCALLWNK 369 (458)
Q Consensus 326 ~~~~ll~s~~g~~d~~i~lwd~~~~~-----~~~~~~~~~~v~~~~~s~ 369 (458)
||..|+++-| ..=.-++||-.... ..-.++.++.|+++.-.-
T Consensus 166 DG~RLVVAvG--SsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ 212 (671)
T PF15390_consen 166 DGQRLVVAVG--SSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATV 212 (671)
T ss_pred cCCEEEEEeC--CeEEEEEecCchhhhhhCCcceeecCCCceEEEEEec
Confidence 9998887765 45567889854322 112334455555554433
No 408
>PHA02790 Kelch-like protein; Provisional
Probab=95.63 E-value=0.6 Score=47.14 Aligned_cols=132 Identities=11% Similarity=0.035 Sum_probs=73.0
Q ss_pred EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC--eEEEEeCCCceee--EEecCCCcccEEEEEeCCC
Q 012679 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC--QVQLWDSTANRQL--RTLRGGHRSRVGSLAWNNH 237 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg--~v~iwd~~~~~~~--~~~~~~~~~~v~~l~~~~~ 237 (458)
.+..||..++++..+..+.........+. -+|...++|+.++ .+..||..+++-. ..+.. ..........++.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~-~r~~~~~~~~~g~ 364 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK-PRCNPAVASINNV 364 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC-CCcccEEEEECCE
Confidence 67889988887755554443222222222 3677778887543 5888987665432 22221 1223344556888
Q ss_pred eEEEEeCCC---cEEEEEccCCCeeEE-EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679 238 ILTTGGMDG---LIINNDVRVRDHIVE-TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 238 ~l~sg~~dg---~i~vwd~~~~~~~~~-~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
+.+.|+.++ .+..||.++...... .+.........+. -++++.+.|+ .+.+||..+..-
T Consensus 365 IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~W 427 (480)
T PHA02790 365 IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESSNTW 427 (480)
T ss_pred EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCCCcE
Confidence 888888664 467888876543111 1111111112222 3566666664 577888876543
No 409
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.59 E-value=3.8 Score=43.31 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=57.8
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC-ceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-NRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVE 261 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 261 (458)
.-.|..|..+|+|++||..+..|. .|-.+.. ......+.+ ....|.|=. +.+. .. .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~-g~~~i~Crt-----------------~~v~--~~--~ 140 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFED-GKKEINCRT-----------------VPVD--ER--F 140 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccC-CCcceeEEE-----------------EEec--hh--h
Confidence 346889999999999999888764 4433322 111122222 112222211 1111 10 0
Q ss_pred EEcccccceEeEEEcCC---CCEEEEEECCCcEEEEeCCCCCC
Q 012679 262 TYRGHNQEVCGLKWSAS---GQQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 262 ~~~~h~~~v~~l~~spd---~~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
....+...|..+.|+|. +..|+.-+.|+++++||+.....
T Consensus 141 ~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 141 FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence 11234567888999995 68999999999999999975543
No 410
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.54 E-value=2.1 Score=40.05 Aligned_cols=268 Identities=11% Similarity=0.115 Sum_probs=120.7
Q ss_pred ccceeecc-CCCeEEEEcCCEEEEEECCCCC-eeeEE-EecCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679 143 YLNLLDWG-SSNVLAIALGSTVYLWDASDGT-TSELV-TVDDE-NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218 (458)
Q Consensus 143 ~~~~~~~~-~~~~la~~~d~~v~iwd~~~~~-~~~~~-~~~~h-~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~ 218 (458)
.+..+.|. +++-++++..+.|.- ..+.|+ ..... ..... .-...+|.|..+ ..+++| ..| +.+.....++.-
T Consensus 18 ~l~dV~F~d~~~G~~VG~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW 93 (302)
T PF14870_consen 18 PLLDVAFVDPNHGWAVGAYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTW 93 (302)
T ss_dssp -EEEEEESSSS-EEEEETTTEEEE-ESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-
T ss_pred ceEEEEEecCCEEEEEecCCEEEE-ECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCc
Confidence 45556664 466777787776532 223332 22221 11110 123677887643 344444 455 344444455444
Q ss_pred EEecC--CCcccEEE-EEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679 219 RTLRG--GHRSRVGS-LAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295 (458)
Q Consensus 219 ~~~~~--~~~~~v~~-l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd 295 (458)
..+.. .-...... .+.+......++..|.|+.=. ..+..-......-.+.+..+.-++||++++++...+...-||
T Consensus 94 ~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~ 172 (302)
T PF14870_consen 94 ERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWD 172 (302)
T ss_dssp EE----TT-SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-
T ss_pred EEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEec
Confidence 33321 12222222 333444444445556543321 222222233344557788899999999999987776677888
Q ss_pred CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC-CCCCeeEE--Ee---CCCCeEEEEEcC
Q 012679 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT-HTGACLNS--VD---TGSQVCALLWNK 369 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~-~~~~~~~~--~~---~~~~v~~~~~s~ 369 (458)
.-...- ...-..-...|.+|.|.|++...+++ ..|.|++=+. ...+.-.. .. ....+..++|.+
T Consensus 173 ~G~~~w------~~~~r~~~~riq~~gf~~~~~lw~~~----~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 173 PGQTTW------QPHNRNSSRRIQSMGFSPDGNLWMLA----RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP 242 (302)
T ss_dssp TT-SS-------EEEE--SSS-EEEEEE-TTS-EEEEE----TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS
T ss_pred CCCccc------eEEccCccceehhceecCCCCEEEEe----CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC
Confidence 543222 22223346789999999985554543 6788888772 22222111 11 123478999998
Q ss_pred CCCeEEEEecCCCCcEEEEeCCCceeeEE---EeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679 370 NERELLSSHGFTQNQLTLWKYPSMVKMAE---LSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430 (458)
Q Consensus 370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~---~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW 430 (458)
++...++ | ..|.+ +.....++.-.. ...-...+..+.|.++.+-+| -+.||.|.=|
T Consensus 243 ~~~~wa~--g-g~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 243 PNEIWAV--G-GSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp SS-EEEE--E-STT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred CCCEEEE--e-CCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 8766665 3 23433 333333332222 223345578888876544444 5688887655
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.51 E-value=0.53 Score=48.27 Aligned_cols=109 Identities=17% Similarity=0.302 Sum_probs=73.9
Q ss_pred eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEec--CCCCcEEEEeCCCCCCeEEEEEC
Q 012679 270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC--PFQSNLLATGGGGGDRCIKFWNT 347 (458)
Q Consensus 270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--p~~~~ll~s~~g~~d~~i~lwd~ 347 (458)
..-+.-+.-++.-++-+....+.|||.+.+.. +....+ .....|..+.|. |++..++++| ..+.|.++--
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l----E~~~~f-~~~~~I~dLDWtst~d~qsiLaVG---f~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVL----EYEESF-SEDDPIRDLDWTSTPDGQSILAVG---FPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEE----EEeeee-cCCCceeeceeeecCCCCEEEEEE---cCcEEEEEEc
Confidence 33444444455445555556899999987653 222333 456789999984 6788899988 6888888853
Q ss_pred C---------CCCeeEEEe----CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679 348 H---------TGACLNSVD----TGSQVCALLWNKNERELLSSHGFTQNQLTLWKY 390 (458)
Q Consensus 348 ~---------~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~ 390 (458)
. +...++.++ +..+|...+|.++|..++++ .+++.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s----GNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS----GNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe----CCEEEEECC
Confidence 2 223455543 34689999999999988874 578888874
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.29 E-value=0.75 Score=48.45 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=28.3
Q ss_pred CCCcEEEEEEcCC---CCEEEEEeCCCcEEEEecCCCCccc
Q 012679 402 HTSRVLFMAQSPD---GCTVASAAADETLRFWNVFGAPQVI 439 (458)
Q Consensus 402 h~~~V~~l~~spd---g~~l~s~s~Dg~i~iW~~~~~~~~~ 439 (458)
+...|..+.|+|. +..|+.-..|+++|+||+.......
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCe
Confidence 4456888888885 5788888888999999987654433
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=0.082 Score=56.11 Aligned_cols=148 Identities=15% Similarity=0.085 Sum_probs=94.1
Q ss_pred ceEeEEEcCCCCEEEEE--ECCCcEEEEeCCCCCCCCcce--ee---eeecccccceeEEEecCCCCcEEEEeCCCCCCe
Q 012679 269 EVCGLKWSASGQQLASG--GNDNLLHIWDRSMASSNSVTQ--WL---HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341 (458)
Q Consensus 269 ~v~~l~~spd~~~l~sg--~~dg~i~iwd~~~~~~~~~~~--~~---~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~ 341 (458)
.+..+...+|+...++. +++-.|..||++........+ ++ ........-+.++.|.|.-....+.+. .|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--cccc
Confidence 34455556676655443 344578999988755432111 00 111122344568889986555555554 7889
Q ss_pred EEEEECCCCC-eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC----CCcEEEEEEcCCCC
Q 012679 342 IKFWNTHTGA-CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH----TSRVLFMAQSPDGC 416 (458)
Q Consensus 342 i~lwd~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h----~~~V~~l~~spdg~ 416 (458)
|++.-+.-.. .+..+......++++|+|.|+.+++ |...|++.-|.. .++....+.+. ..+|++|+|-....
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFI--GRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeE--ecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 9888765432 3344566777999999999999999 888999888864 33333333221 37899999987777
Q ss_pred EEEEE
Q 012679 417 TVASA 421 (458)
Q Consensus 417 ~l~s~ 421 (458)
++++-
T Consensus 257 flvvy 261 (1405)
T KOG3630|consen 257 FLVVY 261 (1405)
T ss_pred EEEEe
Confidence 76644
No 414
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.23 E-value=0.0023 Score=61.36 Aligned_cols=143 Identities=17% Similarity=0.280 Sum_probs=101.5
Q ss_pred EeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350 (458)
Q Consensus 271 ~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~ 350 (458)
-...|-+.+.-++.++.+..+..||-.... .... ..++....++|..++..+++.+. ..+.+.+||+.+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~-------~le~-n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~e 107 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQV-------ILEL-NPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSE 107 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcce-------eccc-CCchhHhhhhhccccchhhhhhh--cCCCeeechhhhh
Confidence 346678877779999999999999954332 1122 23455567889887777776655 7889999999764
Q ss_pred CeeE-EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCc
Q 012679 351 ACLN-SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADET 426 (458)
Q Consensus 351 ~~~~-~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 426 (458)
..-+ .......-.-+.|++.+.+++. |...+.+.|++..+.+.+...-.|..+++++++.+.+. .+.++.|..
T Consensus 108 ytqqLE~gg~~s~sll~wsKg~~el~i--g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 108 YTQQLESGGTSSKSLLAWSKGTPELVI--GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred hHHHHhccCcchHHHHhhccCCccccc--cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 3211 1112223334789999999998 67899999999988888777666999999999999774 444555543
No 415
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=0.8 Score=50.22 Aligned_cols=231 Identities=12% Similarity=0.071 Sum_probs=103.6
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE 261 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~ 261 (458)
.....++|+|...++|.|+.+|.|++|-...-+..........-.+..+.+ ..........+..+.+|.......
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~--- 112 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG--- 112 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce---
Confidence 345678999999999999999999999755443332222101111222222 122233334445555555432221
Q ss_pred EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe
Q 012679 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341 (458)
Q Consensus 262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~ 341 (458)
..+.+.+++..-.+--.. +.| ..+.+++||..-....... ...+..+...+ ....++.-...... .+-.
T Consensus 113 --~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~s~~~~~~~~~----~~~~ 181 (993)
T KOG1983|consen 113 --VFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLK--YAGTESSNFVP-YESLSPTLSIEGLV----IDLD 181 (993)
T ss_pred --eecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccce--eccccccccce-eeeeccceeeeccc----cccc
Confidence 112233333332222223 344 7788888886543221000 00111111000 00000000000000 1111
Q ss_pred EEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEE
Q 012679 342 IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA 421 (458)
Q Consensus 342 i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 421 (458)
-.+|-+..-. .........+.+..+....+..+. +..+.+.+|+.........+. +.....++++..++++
T Consensus 182 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~ 252 (993)
T KOG1983|consen 182 TVLISLPDAY-LGLSLIEYESLQVLYYSPTKILIG---FNRGLVVIKDRASKYVQSAYL-----PNGQLESRDGSHFVSY 252 (993)
T ss_pred cceeeccccc-ccccccccccceeeeecCCCccee---eeeeeeeehhcccccchhhcc-----cccccCccCCceEEEE
Confidence 1111111111 111112233344444444444432 245566666654433322222 2222228899999999
Q ss_pred eCCCcEEEEecCCCCc
Q 012679 422 AADETLRFWNVFGAPQ 437 (458)
Q Consensus 422 s~Dg~i~iW~~~~~~~ 437 (458)
-.||.+.+||+..+..
T Consensus 253 h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 253 HTDGSYAFWDVSSGKL 268 (993)
T ss_pred EecCCEEeeecCCCce
Confidence 9999999999998754
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.15 E-value=1.3 Score=43.02 Aligned_cols=148 Identities=11% Similarity=0.056 Sum_probs=80.0
Q ss_pred cceEeEEEcCCCCEEEEEE-----------CCC-cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679 268 QEVCGLKWSASGQQLASGG-----------NDN-LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 268 ~~v~~l~~spd~~~l~sg~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~ 335 (458)
.....|+|.++|+++++-. ..+ .|.+++-..+.... .....+.........+++.+++ ++++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~--d~~~vfa~~l~~p~Gi~~~~~G--lyV~~- 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY--DKSNVFAEELSMVTGLAVAVGG--VYVAT- 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc--ceeEEeecCCCCccceeEecCC--EEEeC-
Confidence 3456789999999877653 223 67777644332211 0122333333456789998865 66653
Q ss_pred CCCCCeEEEEECCCC-----Ce--e-EEEeC-----CCCeEEEEEcCCCCeEEEEecCC------------------CCc
Q 012679 336 GGGDRCIKFWNTHTG-----AC--L-NSVDT-----GSQVCALLWNKNERELLSSHGFT------------------QNQ 384 (458)
Q Consensus 336 g~~d~~i~lwd~~~~-----~~--~-~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~------------------d~~ 384 (458)
.....++.|.... +. + ..+.. +.....+.|.|+|...++. |.. .+.
T Consensus 89 --~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~-G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 89 --PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNH-GNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred --CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEec-ccCCCceeccCCCccCcccccCce
Confidence 3333334454321 21 1 12222 2347789999999766654 311 134
Q ss_pred EEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC
Q 012679 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD 424 (458)
Q Consensus 385 i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 424 (458)
|.-++....+......++ .....++|+|+|+++++-..+
T Consensus 166 i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 166 LFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 555555544332222333 335689999999988765433
No 417
>PRK10115 protease 2; Provisional
Probab=95.11 E-value=5.4 Score=42.25 Aligned_cols=196 Identities=8% Similarity=-0.020 Sum_probs=99.5
Q ss_pred EEEEEe--CCCeEEEEe-C----CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC------CcEEEEe
Q 012679 229 VGSLAW--NNHILTTGG-M----DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND------NLLHIWD 295 (458)
Q Consensus 229 v~~l~~--~~~~l~sg~-~----dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d------g~i~iwd 295 (458)
+..+.| ++++|+.+. . ...|++.|+.++..+...+.+- -..++|++|++.|+....+ ..|+.++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 333444 455555442 2 2358888887665322223221 1458999999877766543 3577777
Q ss_pred CCCCCCCCcceeeeeeccccccee-EEEecCCCCcEEEEeCCCCCCeEEEEECC--CCCeeEEEeCCCCeEEEEEcCCCC
Q 012679 296 RSMASSNSVTQWLHRLEEHTSAVK-AIAWCPFQSNLLATGGGGGDRCIKFWNTH--TGACLNSVDTGSQVCALLWNKNER 372 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~ll~s~~g~~d~~i~lwd~~--~~~~~~~~~~~~~v~~~~~s~~~~ 372 (458)
+.+.... ...+ +........ .+..+.++..+++......++.+.+++.. ++.....+.....+..-..+.. .
T Consensus 206 lgt~~~~--d~lv--~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 280 (686)
T PRK10115 206 IGTPASQ--DELV--YEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQ-H 280 (686)
T ss_pred CCCChhH--CeEE--EeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCC-C
Confidence 7766321 1112 222222222 33334467777766655566789999953 3443333333322221112333 3
Q ss_pred eEEEEec--CCCCcEEEEeCCCceeeEEEeCC-C-CcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679 373 ELLSSHG--FTQNQLTLWKYPSMVKMAELSGH-T-SRVLFMAQSPDGCTVASAAADETLRFWNVF 433 (458)
Q Consensus 373 ~l~~~~g--~~d~~i~iwd~~~~~~~~~~~~h-~-~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~ 433 (458)
.++..+. .....|...++........+..+ . ..|..+.+. .+.++++...+|.-+++-+.
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 3333332 22334444455422222344445 3 367888887 33566666677776666554
No 418
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.07 E-value=5.8 Score=42.30 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=98.7
Q ss_pred ceEeEEEcCC-CCEEEEEEC----------CCcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEecCCCCcEEEEeC
Q 012679 269 EVCGLKWSAS-GQQLASGGN----------DNLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 269 ~v~~l~~spd-~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~ 335 (458)
.|.++.|..| +.++++|+. .|.|.|+....... +.....+ .+.+.++. -.++.++|.
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~------L~~v~e~~v~Gav~aL~--~fngkllA~-- 845 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS------LELVAETVVKGAVYALV--EFNGKLLAG-- 845 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc------eeeeeeeeeccceeehh--hhCCeEEEe--
Confidence 4666678887 778888752 46777877766322 2222222 34454444 344566664
Q ss_pred CCCCCeEEEEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--eeEEE-eCCCCcEEEEEE
Q 012679 336 GGGDRCIKFWNTHTGACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--KMAEL-SGHTSRVLFMAQ 411 (458)
Q Consensus 336 g~~d~~i~lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--~~~~~-~~h~~~V~~l~~ 411 (458)
-...|++|+..+.+.++.- ....++..+...-.+.++++ |.--+.+.+..+...+ ..... ..+..+.+++.+
T Consensus 846 --In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~V--gDlm~Sitll~y~~~eg~f~evArD~~p~Wmtavei 921 (1096)
T KOG1897|consen 846 --INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAV--GDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEI 921 (1096)
T ss_pred --cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEE--eeccceEEEEEEeccCCceEEeehhhCccceeeEEE
Confidence 5678999999988555433 44567888999999999999 6567777776665443 33222 246677888887
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 412 SPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 412 spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
-.+. .++.+..+|.+.+-...+..
T Consensus 922 l~~d-~ylgae~~gNlf~v~~d~~~ 945 (1096)
T KOG1897|consen 922 LDDD-TYLGAENSGNLFTVRKDSDA 945 (1096)
T ss_pred ecCc-eEEeecccccEEEEEecCCC
Confidence 7554 44556778888887766443
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.95 E-value=3.9 Score=39.72 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=55.4
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------cCC-eEEEEeCCC--ce--eeEEecCCCcccEEEEEeC-CCeEEEEeCCC
Q 012679 184 GPVTSVNWAPDGRHIAIGL-----------NNC-QVQLWDSTA--NR--QLRTLRGGHRSRVGSLAWN-NHILTTGGMDG 246 (458)
Q Consensus 184 ~~V~~v~~s~~g~~la~g~-----------~dg-~v~iwd~~~--~~--~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg 246 (458)
.....|+|.++|+++++-. ..+ .|.+++-.. ++ ....+.. .......+++. +. |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G-lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG-VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC-EEEeCCCe
Confidence 3467899999998766642 223 777776432 22 2233332 23345677773 33 55555554
Q ss_pred cEEEEEccCC-----C--eeEEEEcc----cccceEeEEEcCCCCEEEEEE
Q 012679 247 LIINNDVRVR-----D--HIVETYRG----HNQEVCGLKWSASGQQLASGG 286 (458)
Q Consensus 247 ~i~vwd~~~~-----~--~~~~~~~~----h~~~v~~l~~spd~~~l~sg~ 286 (458)
.+++.|.... . .++..+.. +......+.|.|||.+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3344454321 1 12222322 234477899999998776555
No 420
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.89 E-value=3.6 Score=39.08 Aligned_cols=106 Identities=11% Similarity=0.063 Sum_probs=56.0
Q ss_pred CCCEEEEEecCC-----eEEEEeCCCcee---eEEecC-C-CcccEEEEEeCCCeEEEEeCC-----CcEEEEEccCCCe
Q 012679 194 DGRHIAIGLNNC-----QVQLWDSTANRQ---LRTLRG-G-HRSRVGSLAWNNHILTTGGMD-----GLIINNDVRVRDH 258 (458)
Q Consensus 194 ~g~~la~g~~dg-----~v~iwd~~~~~~---~~~~~~-~-~~~~v~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~~ 258 (458)
++.++++|+.++ .+..||+.+.+. ...+.. . ......+...++.+.+.|+.. ..+..||+.+..-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 566677777543 577777766553 122221 0 111223344577787887752 3578888876653
Q ss_pred eEE-EEcccccceEeEEEcCCCCEEEEEECCC----cEEEEeCCCCC
Q 012679 259 IVE-TYRGHNQEVCGLKWSASGQQLASGGNDN----LLHIWDRSMAS 300 (458)
Q Consensus 259 ~~~-~~~~h~~~v~~l~~spd~~~l~sg~~dg----~i~iwd~~~~~ 300 (458)
... .+... ..........++++.+.|+.++ .+.+||..+..
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 211 11111 1111222234677788887764 35678877654
No 421
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.88 E-value=1.4 Score=45.88 Aligned_cols=155 Identities=9% Similarity=0.092 Sum_probs=95.0
Q ss_pred cccceeeccCCCeEEEEcCCEEEEEECCCCCeee----EEEec----------------CCCCCEEEEEEcC--CCCEEE
Q 012679 142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSE----LVTVD----------------DENGPVTSVNWAP--DGRHIA 199 (458)
Q Consensus 142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~----~~~~~----------------~h~~~V~~v~~s~--~g~~la 199 (458)
|.-|+..-+..+++.++..+.|+||+...-.... ...+. .....|+.|.... +...|+
T Consensus 39 fKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl 118 (717)
T PF08728_consen 39 FKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLL 118 (717)
T ss_pred cccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEE
Confidence 4445555555778888999999999976432211 00100 0112255554443 556899
Q ss_pred EEecCCeEEEEeCCC-------c----ee-e------EEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCC-
Q 012679 200 IGLNNCQVQLWDSTA-------N----RQ-L------RTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVR- 256 (458)
Q Consensus 200 ~g~~dg~v~iwd~~~-------~----~~-~------~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~- 256 (458)
++..||.|.+|.+++ . +. . -.+.......+++++++ .++||+++....|.||-....
T Consensus 119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~ 198 (717)
T PF08728_consen 119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD 198 (717)
T ss_pred EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc
Confidence 999999999996521 0 00 0 00111134567788875 478888888888888765442
Q ss_pred -CeeEEEEcccccceEeEEEcCCC---C---EEEEEECCCcEEEEeC
Q 012679 257 -DHIVETYRGHNQEVCGLKWSASG---Q---QLASGGNDNLLHIWDR 296 (458)
Q Consensus 257 -~~~~~~~~~h~~~v~~l~~spd~---~---~l~sg~~dg~i~iwd~ 296 (458)
......-..|...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 199 ~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 199 ERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11111122356678899997743 2 7888999999999887
No 422
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.85 E-value=4.2 Score=39.61 Aligned_cols=240 Identities=12% Similarity=0.165 Sum_probs=105.1
Q ss_pred CeeeEEEecCCCCCEEEEEEc-----------CCCCEEEEEe-cCCeEEEEeCCCc----eeeEEecC-------CCcc-
Q 012679 172 TTSELVTVDDENGPVTSVNWA-----------PDGRHIAIGL-NNCQVQLWDSTAN----RQLRTLRG-------GHRS- 227 (458)
Q Consensus 172 ~~~~~~~~~~h~~~V~~v~~s-----------~~g~~la~g~-~dg~v~iwd~~~~----~~~~~~~~-------~~~~- 227 (458)
++.....+..-.+.....-|+ .+.++|++.+ .++.|+|.|+.+. +..+.+.. +-..
T Consensus 53 qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~P 132 (461)
T PF05694_consen 53 QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRP 132 (461)
T ss_dssp SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEE
T ss_pred cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCC
Confidence 443333344334456666665 2456777765 7789999998743 44444432 0111
Q ss_pred -cEEEEEeCCCeEEEE--eC----CCcEEEEEccCCCeeEEEEcc---cccceEeEEEcCCCCEEEEEE-----------
Q 012679 228 -RVGSLAWNNHILTTG--GM----DGLIINNDVRVRDHIVETYRG---HNQEVCGLKWSASGQQLASGG----------- 286 (458)
Q Consensus 228 -~v~~l~~~~~~l~sg--~~----dg~i~vwd~~~~~~~~~~~~~---h~~~v~~l~~spd~~~l~sg~----------- 286 (458)
.+.|+. +|.+++++ +. -|.+.+.|-++-+. ...... ....-..+-|.|..+.++|..
T Consensus 133 HT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v-~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf 210 (461)
T PF05694_consen 133 HTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEV-KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGF 210 (461)
T ss_dssp EEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--E-EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT--
T ss_pred ceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccc-cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCC
Confidence 122222 56677765 22 24566777664432 233322 122345677788888887763
Q ss_pred ---------CCCcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEe--cCCCCcEEEEeCCCCCCeEEEE-ECCCCC-
Q 012679 287 ---------NDNLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAW--CPFQSNLLATGGGGGDRCIKFW-NTHTGA- 351 (458)
Q Consensus 287 ---------~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~p~~~~ll~s~~g~~d~~i~lw-d~~~~~- 351 (458)
...++.+||+...+. ++++.-. ......|.| .|....-++.+. ...+|..| ....++
T Consensus 211 ~~~d~~~~~yG~~l~vWD~~~r~~------~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W 282 (461)
T PF05694_consen 211 NPEDLEAGKYGHSLHVWDWSTRKL------LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEW 282 (461)
T ss_dssp -TTTHHHH-S--EEEEEETTTTEE------EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEE
T ss_pred ChhHhhcccccCeEEEEECCCCcE------eeEEecCCCCCceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCe
Confidence 245899999998776 5555432 223445555 454555555443 44455444 334443
Q ss_pred ---eeEEEeC------------------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc---eeeEEEe-C-----
Q 012679 352 ---CLNSVDT------------------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM---VKMAELS-G----- 401 (458)
Q Consensus 352 ---~~~~~~~------------------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~---~~~~~~~-~----- 401 (458)
.+..+.. ..-++.|..|.|.++|.++ ....|.|+.||+..- +.+.++. |
T Consensus 283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs-~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~ 361 (461)
T PF05694_consen 283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVS-NWLHGDVRQYDISDPFNPKLVGQVFLGGSIRK 361 (461)
T ss_dssp EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEE-ETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-
T ss_pred eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEE-cccCCcEEEEecCCCCCCcEEeEEEECcEecc
Confidence 1222211 2347899999999999998 468999999999653 2333221 1
Q ss_pred ----------CCCcEEEEEEcCCCCEEEEEe
Q 012679 402 ----------HTSRVLFMAQSPDGCTVASAA 422 (458)
Q Consensus 402 ----------h~~~V~~l~~spdg~~l~s~s 422 (458)
-.+...-|..|-||+.|....
T Consensus 362 ~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 362 GDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 012346678888998876543
No 423
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.80 E-value=6.8 Score=41.83 Aligned_cols=155 Identities=12% Similarity=0.130 Sum_probs=92.2
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccce-------------eEEEecC--CCCcEEEEeCC-C-----
Q 012679 279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV-------------KAIAWCP--FQSNLLATGGG-G----- 337 (458)
Q Consensus 279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v-------------~~l~~~p--~~~~ll~s~~g-~----- 337 (458)
+..++.++.|+.|.-.|..+++. +..+.. .+.| ..+.-.| .+. ++++|+. .
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~------~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~ 331 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKL------CEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYST 331 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCE------EEEecC-CCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccc
Confidence 45778888899999999888875 322211 1111 0011111 123 3344421 1
Q ss_pred --CCCeEEEEECCCCCeeEEEeCCCC------------------e-EEEEEcCCCCeEEEEecC----------------
Q 012679 338 --GDRCIKFWNTHTGACLNSVDTGSQ------------------V-CALLWNKNERELLSSHGF---------------- 380 (458)
Q Consensus 338 --~d~~i~lwd~~~~~~~~~~~~~~~------------------v-~~~~~s~~~~~l~~~~g~---------------- 380 (458)
.+|.|+-+|.++|+.+..+....+ + ...++++....++...|.
T Consensus 332 ~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~ 411 (764)
T TIGR03074 332 DEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEK 411 (764)
T ss_pred cCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCccc
Confidence 268899999999999988753210 1 234556665665553331
Q ss_pred CCCcEEEEeCCCceeeEEEeC--CC-------CcEEEEEEcC-CCC---EEEEEeCCCcEEEEecCCCCccccc
Q 012679 381 TQNQLTLWKYPSMVKMAELSG--HT-------SRVLFMAQSP-DGC---TVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 381 ~d~~i~iwd~~~~~~~~~~~~--h~-------~~V~~l~~sp-dg~---~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
-.+.|.-.|..+++..-.++. |+ ....-+.+.. +|+ .++.++.+|.+.+.|-.+++.+.+.
T Consensus 412 y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 412 YSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 134567778888888877754 21 1111122322 563 7889999999999999988877653
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=94.68 E-value=4.2 Score=38.86 Aligned_cols=264 Identities=11% Similarity=0.067 Sum_probs=127.8
Q ss_pred eec-cCCCeEEEEcCCEEEEEECCCC-CeeeEE-EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679 147 LDW-GSSNVLAIALGSTVYLWDASDG-TTSELV-TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG 223 (458)
Q Consensus 147 ~~~-~~~~~la~~~d~~v~iwd~~~~-~~~~~~-~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~ 223 (458)
+.| ++++.++++.++.|..=. +.| ...... .+......+.++.|.++ ..+++| ..|.|..- .+.++.-..+..
T Consensus 51 v~F~d~~~g~avG~~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i~~S-~DgG~tW~~~~~ 126 (334)
T PRK13684 51 IAFTDPNHGWLVGSNRTLLETN-DGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLLLHT-TDGGKNWTRIPL 126 (334)
T ss_pred EEEeCCCcEEEEECCCEEEEEc-CCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceEEEE-CCCCCCCeEccC
Confidence 444 446777777777654422 222 222211 11112345778888653 344444 44443332 222332222211
Q ss_pred C--Cc-ccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE-EeCCCC
Q 012679 224 G--HR-SRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI-WDRSMA 299 (458)
Q Consensus 224 ~--~~-~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i-wd~~~~ 299 (458)
. .. ........++..+..++..|.|..=+- .++.-......-...+.++.+.+++.+++++.. |.+.. +| .+
T Consensus 127 ~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~D-gG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~--~g 202 (334)
T PRK13684 127 SEKLPGSPYLITALGPGTAEMATNVGAIYRTTD-GGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSR-GNFYSTWE--PG 202 (334)
T ss_pred CcCCCCCceEEEEECCCcceeeeccceEEEECC-CCCCceeCcCCCcceEEEEEECCCCeEEEEeCC-ceEEEEcC--CC
Confidence 0 11 122223334433334445554433221 122111112223457888999999877766544 54442 22 11
Q ss_pred CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-----CCCeEEEEEcCCCCeE
Q 012679 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-----GSQVCALLWNKNEREL 374 (458)
Q Consensus 300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l 374 (458)
.. .+......-...+.++++.+++. +++++ ..|.+++=....|..-..... ...+..+.+.+++..+
T Consensus 203 g~----tW~~~~~~~~~~l~~i~~~~~g~-~~~vg---~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~ 274 (334)
T PRK13684 203 QT----AWTPHQRNSSRRLQSMGFQPDGN-LWMLA---RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIW 274 (334)
T ss_pred CC----eEEEeeCCCcccceeeeEcCCCC-EEEEe---cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEE
Confidence 11 11222223346788999999655 44444 456665433344443222222 2347788899987766
Q ss_pred EEEecCCCCcEEEEeCCCceeeEEEe---CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679 375 LSSHGFTQNQLTLWKYPSMVKMAELS---GHTSRVLFMAQSPDGCTVASAAADETLRFWN 431 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~~~~~~~~~---~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~ 431 (458)
++ | .+|.+. .....++.-.... .-....+.+.|..+++.++ ++..|.|.-|+
T Consensus 275 ~~--G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 275 AG--G-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EE--c-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 65 3 456544 3444444333332 2223577788776666555 66788887775
No 425
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.62 E-value=7.5 Score=41.48 Aligned_cols=272 Identities=12% Similarity=0.154 Sum_probs=147.1
Q ss_pred CCCeEEEEcCCEEEEE--ECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCccc
Q 012679 151 SSNVLAIALGSTVYLW--DASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR 228 (458)
Q Consensus 151 ~~~~la~~~d~~v~iw--d~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~ 228 (458)
...++++..||.+.-| |..+|.........-...++.--.|+..++.-+.+..|.-..+|.. +++.+.+-- .-..
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spl--s~ke 671 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPL--SLKE 671 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEecc--chHH
Confidence 3557777778877655 5556655444432233556666677665544444445555556643 333322211 1111
Q ss_pred EEEEE-eC----CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccccceEeEEEcCCCCEEEEEECC--------------
Q 012679 229 VGSLA-WN----NHILTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSASGQQLASGGND-------------- 288 (458)
Q Consensus 229 v~~l~-~~----~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~sg~~d-------------- 288 (458)
+..++ |+ +..|+++.. +.+.+.-+..-+. .+++..- ......+++.+....+++.+.-
T Consensus 672 v~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~ 749 (1096)
T KOG1897|consen 672 VNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEV 749 (1096)
T ss_pred hhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceE
Confidence 22222 21 344555444 3455544432221 1233322 2334456666644444444321
Q ss_pred CcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEecCCCCcEEEEeCC--------CCCCeEEEEECCCCCeeE---E
Q 012679 289 NLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGGG--------GGDRCIKFWNTHTGACLN---S 355 (458)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~g--------~~d~~i~lwd~~~~~~~~---~ 355 (458)
..++++|-++.+.. ..+.+... ...+.+..|..+.+..+++|.+ ...|.|.++....+..+. .
T Consensus 750 s~l~vlD~nTf~vl----~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e 825 (1096)
T KOG1897|consen 750 SFLRVLDQNTFEVL----SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE 825 (1096)
T ss_pred EEEEEecCCceeEE----eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee
Confidence 13556665543320 01122111 1234555688776667777642 245778888777643333 2
Q ss_pred EeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 356 VDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 356 ~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
....+.+.++.- -+|+.++. -...|++|++.+.+.+..-..|..++..+...-.|..++.|..=+.+.+-.....
T Consensus 826 ~~v~Gav~aL~~-fngkllA~----In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 826 TVVKGAVYALVE-FNGKLLAG----INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred eeeccceeehhh-hCCeEEEe----cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 233444544432 25666655 3568999999998777766778888889999889999999998888877666554
Q ss_pred C
Q 012679 436 P 436 (458)
Q Consensus 436 ~ 436 (458)
+
T Consensus 901 e 901 (1096)
T KOG1897|consen 901 E 901 (1096)
T ss_pred C
Confidence 4
No 426
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.52 E-value=5 Score=40.17 Aligned_cols=274 Identities=17% Similarity=0.150 Sum_probs=145.5
Q ss_pred CCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679 136 PDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN 215 (458)
Q Consensus 136 ~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~ 215 (458)
..+..|..+..+-.+-++.+-++.+.-+..||..+++..++.... ...+|..+.-+-.|+ |.+|+.+| |.+.+.+..
T Consensus 159 r~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~~-~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~ 235 (671)
T COG3292 159 RPLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASPP-LDKAINALIADVQGR-LWVGTDQG-VYLQEAEGW 235 (671)
T ss_pred cccccCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCCc-chhhHHHHHHHhcCc-EEEEeccc-eEEEchhhc
Confidence 344456666666666665666666666788888888864433222 125666666665554 77888886 788777664
Q ss_pred eeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcc--cccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 216 RQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRG--HNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 216 ~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
+.......-....|..+.-+ ...+-.|+..|..+.--.+ ........+. .-+.|.++....+|. |-+++.++.++
T Consensus 236 ~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~r-q~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~ 313 (671)
T COG3292 236 RASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPR-QGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVR 313 (671)
T ss_pred cccccCCCCcchheeeeecccCCCEEEeecccceeEecCC-CCccccccccCCccccccceeeccCCC-EeeeccCceEE
Confidence 33332222234455555555 3567777777754332222 2111111111 123456666665665 56666666666
Q ss_pred EEeCCCCCCCCcceeeeeecccc-cceeEEEecC--CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--CCCeEEEEE
Q 012679 293 IWDRSMASSNSVTQWLHRLEEHT-SAVKAIAWCP--FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--GSQVCALLW 367 (458)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p--~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~ 367 (458)
+-+..-.. ...+.... ..+...+..| ....+... ..-|.+.+-+-.+|..+..... +..|+..++
T Consensus 314 ~~~a~w~~-------ma~in~~dG~v~~~~~~a~~ll~~~v~~~---ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~ 383 (671)
T COG3292 314 YLTADWKR-------MAVINDSDGGVSQYEAVAPALLSWGVRQL---NSIGELMVANGSTGELVRSVHQLRGMNITTTLE 383 (671)
T ss_pred Eecchhhh-------eeeeecCCCchhhhhccCchhcccceeec---cccceEEEecCCCCcEEEEeeeccccccchhhh
Confidence 54422110 11111111 1111111111 11111111 1233455555666766665422 456777777
Q ss_pred cCCCCeEEEEecCCCCcEEEEeCCC-ceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 012679 368 NKNERELLSSHGFTQNQLTLWKYPS-MVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLR 428 (458)
Q Consensus 368 s~~~~~l~~~~g~~d~~i~iwd~~~-~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~ 428 (458)
...+..-+.+ .++-+..|+..+ +....+..+ ..++|..+.-.|+++ |..|+.+|.++
T Consensus 384 d~~g~lWlgs---~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 384 DSRGRLWLGS---MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred ccCCcEEEEe---cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 7766665543 455566677666 333333333 346788888899988 66688888654
No 427
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=2.9 Score=43.15 Aligned_cols=176 Identities=15% Similarity=0.203 Sum_probs=91.4
Q ss_pred ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeE-EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679 143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSEL-VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220 (458)
Q Consensus 143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~-~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~ 220 (458)
.+-.+.|+. ..++++..+|++++|++-....... .-.+.....|..+.+..+| +++-..+|.|.+-.-.....+++
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~ 162 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRK 162 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhh
Confidence 455688988 5699999999999999875443221 1112223446666666666 44444566665544222223333
Q ss_pred ecCCCcccEEEEEe---CC----CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679 221 LRGGHRSRVGSLAW---NN----HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293 (458)
Q Consensus 221 ~~~~~~~~v~~l~~---~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i 293 (458)
+..-......+-+| .+ ..++-....--..++-..........+....+.+..+..||+.++|+-=..+|.|.+
T Consensus 163 ~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 163 MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred CCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEE
Confidence 33211111122333 11 112111100001111121111111112222356778999999999999999999999
Q ss_pred EeCCCCCCCCcceeeeeec--ccccceeEEEecCCC
Q 012679 294 WDRSMASSNSVTQWLHRLE--EHTSAVKAIAWCPFQ 327 (458)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~ 327 (458)
-+....+. +-.+. .|. +-..++|+.+.
T Consensus 243 vs~D~~~~------lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 243 VSIDLSQI------LCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred Eecchhhh------hhccCCCCCC-chHhceeecCC
Confidence 88776554 22222 332 23478888743
No 428
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.25 E-value=2.1 Score=39.21 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=86.9
Q ss_pred cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679 312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 312 ~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd 389 (458)
.+-...|.++.|+|+...|+++. ....-.+|=...|+.+.++... +..-.+.|..++.+.++ .-.++.+.++.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~---n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~--dER~~~l~~~~ 156 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVT---NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIV--DERDRALYLFT 156 (316)
T ss_pred ccccccccceeeCCCcceEEEec---CCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEE--ehhcceEEEEE
Confidence 34455599999999988898886 3455556666789999988653 45677888888888887 55788888887
Q ss_pred CCCceeeEE-------Ee--CC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 390 YPSMVKMAE-------LS--GH-TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 390 ~~~~~~~~~-------~~--~h-~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
+.....+.. +. .+ ....-.++|+|..+.|..+=+-.-+.||.+....
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~ 213 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP 213 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence 765422211 11 12 3457789999998888888887788888887554
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.12 E-value=0.85 Score=44.66 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=89.9
Q ss_pred CCCEEEE-EecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---------CCeEEEEeCCCcEEEEEccCCCeeEEEE
Q 012679 194 DGRHIAI-GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---------NHILTTGGMDGLIINNDVRVRDHIVETY 263 (458)
Q Consensus 194 ~g~~la~-g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---------~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 263 (458)
|..+|.. |.....++--|++.|+.+..... |..-| +.++ ...-+.|-.+..|.-.|.+.....+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~-~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDL-KDDVV--VQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeec-CCcce--eecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 4444433 44455677778999999988886 55443 3332 2344556666667777877655322221
Q ss_pred cccccceEeEEEcC----CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679 264 RGHNQEVCGLKWSA----SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339 (458)
Q Consensus 264 ~~h~~~v~~l~~sp----d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d 339 (458)
.....++.-.|+. ...++|+|++.|.|++||--.... ...+.+-..+|..+....+|..+||+| .
T Consensus 555 -esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA------KtalP~lG~aIk~idvta~Gk~ilaTC----k 623 (776)
T COG5167 555 -ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA------KTALPGLGDAIKHIDVTANGKHILATC----K 623 (776)
T ss_pred -eehhccccccccccccccCceEEEecCCCceeeehhhcchh------hhcCcccccceeeeEeecCCcEEEEee----c
Confidence 1122233333332 456999999999999999654433 233455677899999999999999997 4
Q ss_pred CeEEEEECC
Q 012679 340 RCIKFWNTH 348 (458)
Q Consensus 340 ~~i~lwd~~ 348 (458)
..|.+-|++
T Consensus 624 ~yllL~d~~ 632 (776)
T COG5167 624 NYLLLTDVP 632 (776)
T ss_pred ceEEEEecc
Confidence 577777764
No 430
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.11 E-value=4.5 Score=36.89 Aligned_cols=210 Identities=11% Similarity=0.110 Sum_probs=117.8
Q ss_pred cccEEEEEeC---CCeEEEEeCCCc-EEEEEccCCCeeEEEEccc-ccceEeEEEcCCCCEEEEEECC-----CcEEEEe
Q 012679 226 RSRVGSLAWN---NHILTTGGMDGL-IINNDVRVRDHIVETYRGH-NQEVCGLKWSASGQQLASGGND-----NLLHIWD 295 (458)
Q Consensus 226 ~~~v~~l~~~---~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd 295 (458)
..+...+.++ +.-++.+-+-|+ ..++|....+.++...... ..---.-.|||||.+|...-+| |.|-|||
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 3344455554 344555555554 3578887766543222110 0111123589999999876543 7899999
Q ss_pred CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC---------------CCCeEEEEECCCCCeeEEEeCC-
Q 012679 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG---------------GDRCIKFWNTHTGACLNSVDTG- 359 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~---------------~d~~i~lwd~~~~~~~~~~~~~- 359 (458)
.+..-. .+-.+..|.-.-..+.|.+|+..+++..+|- ..-.+.+.|..+|..+.+....
T Consensus 147 ~r~~fq-----rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~ 221 (366)
T COG3490 147 AREGFQ-----RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA 221 (366)
T ss_pred cccccc-----eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch
Confidence 885432 2556667777777899999988887766421 1234666777777776655433
Q ss_pred ----CCeEEEEEcCCCCeEEEEecCC---CC-cEEEEeCCCceeeEEEeC-------CCCcEEEEEEcCCCCEEEEEe-C
Q 012679 360 ----SQVCALLWNKNERELLSSHGFT---QN-QLTLWKYPSMVKMAELSG-------HTSRVLFMAQSPDGCTVASAA-A 423 (458)
Q Consensus 360 ----~~v~~~~~s~~~~~l~~~~g~~---d~-~i~iwd~~~~~~~~~~~~-------h~~~V~~l~~spdg~~l~s~s-~ 423 (458)
-.+..+...++|..++.+- +. +. --.+=....++.+.-+.- ...-|-+++.+.+..+++..+ .
T Consensus 222 ~l~~lSiRHld~g~dgtvwfgcQ-y~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~ 300 (366)
T COG3490 222 SLRQLSIRHLDIGRDGTVWFGCQ-YRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPR 300 (366)
T ss_pred hhhhcceeeeeeCCCCcEEEEEE-eeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCC
Confidence 3467777777777666432 11 00 000111112222222211 123456677776555555444 4
Q ss_pred CCcEEEEecCCCCccccc
Q 012679 424 DETLRFWNVFGAPQVISK 441 (458)
Q Consensus 424 Dg~i~iW~~~~~~~~~~~ 441 (458)
.+...+||..++..+...
T Consensus 301 GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 301 GNRAVIWDAATGAVVSEA 318 (366)
T ss_pred CCeEEEEEcCCCcEEecc
Confidence 456778999888766543
No 431
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=0.9 Score=43.86 Aligned_cols=133 Identities=11% Similarity=0.111 Sum_probs=84.3
Q ss_pred CCeEEEEcCCEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec---CCCc
Q 012679 152 SNVLAIALGSTVYLWDASD--GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR---GGHR 226 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~---~~~~ 226 (458)
++.+.+...|.+.-|-+.. ..+..-+... ..++|.++.||+|.+.||+--.+.+|.+++....+...... ....
T Consensus 34 NkqlfavrSggatgvvvkgpndDVpiSfdm~-d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~ 112 (657)
T KOG2377|consen 34 NKQLFAVRSGGATGVVVKGPNDDVPISFDMD-DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKN 112 (657)
T ss_pred cceEEEEecCCeeEEEEeCCCCCCCceeeec-CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCc
Confidence 4444444444445554432 2222233333 35699999999999999999999999999974433322221 1134
Q ss_pred ccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE
Q 012679 227 SRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG 286 (458)
Q Consensus 227 ~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~ 286 (458)
..|..+.| +..-++.....| +-+|.+......++..+.|...|.-..|.++.+.++-++
T Consensus 113 ~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 113 ANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred ceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 55888999 455666665554 556655544444566677888899899999887654443
No 432
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.72 E-value=0.57 Score=41.70 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=55.6
Q ss_pred cccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEE------Ec-------ccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679 226 RSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVET------YR-------GHNQEVCGLKWSASGQQLASGGNDNLLH 292 (458)
Q Consensus 226 ~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~------~~-------~h~~~v~~l~~spd~~~l~sg~~dg~i~ 292 (458)
..++..+..++++|++-+.+|.+++||+.+....... +. .....|..+.++.+|.-+++-++ |..+
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y 90 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSY 90 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEE
Confidence 3466678888999999999999999999987643322 11 34567888888888887777654 7889
Q ss_pred EEeCCCCC
Q 012679 293 IWDRSMAS 300 (458)
Q Consensus 293 iwd~~~~~ 300 (458)
.|+.....
T Consensus 91 ~y~~~L~~ 98 (219)
T PF07569_consen 91 SYSPDLGC 98 (219)
T ss_pred Eeccccce
Confidence 99876553
No 433
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=93.67 E-value=7.7 Score=41.58 Aligned_cols=189 Identities=12% Similarity=0.173 Sum_probs=105.4
Q ss_pred eEEEEeCCCcEEEEEccCCCeeEEEE-------cccccceEe--EEEcCCCCEEEEEECC---CcEEEEeCCCCCC----
Q 012679 238 ILTTGGMDGLIINNDVRVRDHIVETY-------RGHNQEVCG--LKWSASGQQLASGGND---NLLHIWDRSMASS---- 301 (458)
Q Consensus 238 ~l~sg~~dg~i~vwd~~~~~~~~~~~-------~~h~~~v~~--l~~spd~~~l~sg~~d---g~i~iwd~~~~~~---- 301 (458)
-+++....|.+.+|=.+......... ..-...|+. +++..+|+.++.++.+ +.|++|.+.-.-.
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 35566777888888764332211111 112334444 4555677776666655 7788765321110
Q ss_pred --CC---cceeeeee-cc-----------------cccceeEEEecC------CCCcEEEEeCCCC--CCeEEEEECCCC
Q 012679 302 --NS---VTQWLHRL-EE-----------------HTSAVKAIAWCP------FQSNLLATGGGGG--DRCIKFWNTHTG 350 (458)
Q Consensus 302 --~~---~~~~~~~~-~~-----------------h~~~v~~l~~~p------~~~~ll~s~~g~~--d~~i~lwd~~~~ 350 (458)
.. ....+..+ .. .-..++.+.|-+ ....++++..... ...|.-|.+...
T Consensus 144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~ 223 (753)
T PF11635_consen 144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE 223 (753)
T ss_pred cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence 00 00001100 00 113556666654 2344555543222 457999987653
Q ss_pred C-eeE--------------------------EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE----
Q 012679 351 A-CLN--------------------------SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL---- 399 (458)
Q Consensus 351 ~-~~~--------------------------~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~---- 399 (458)
. .+. .+.....|.++....-+..++. .+.||.|.++|-.+++.+...
T Consensus 224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~--~~~DGsI~~~dr~t~~~~~~~~~~~ 301 (753)
T PF11635_consen 224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAF--AFSDGSIEFRDRNTMKELNETRTNG 301 (753)
T ss_pred CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEE--EEcCCeEEEEecCcchhhccccccc
Confidence 2 111 1112345777777777777777 458999999998887655443
Q ss_pred e-----------C----CCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 012679 400 S-----------G----HTSRVLFMAQSPDGCTVASAAADETLR 428 (458)
Q Consensus 400 ~-----------~----h~~~V~~l~~spdg~~l~s~s~Dg~i~ 428 (458)
. | +-..+..++|||.+..++.-..||.+.
T Consensus 302 ~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 302 EPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 1 0 112345689999999999999999966
No 434
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.66 E-value=0.36 Score=30.17 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=26.8
Q ss_pred CCEEEEEEcCC-C--CEEEEEecCCeEEEEeCCCc
Q 012679 184 GPVTSVNWAPD-G--RHIAIGLNNCQVQLWDSTAN 215 (458)
Q Consensus 184 ~~V~~v~~s~~-g--~~la~g~~dg~v~iwd~~~~ 215 (458)
+.|.+++|+|+ + .+|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 58898888999999999853
No 435
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.59 E-value=6.5 Score=36.97 Aligned_cols=233 Identities=12% Similarity=0.018 Sum_probs=117.0
Q ss_pred CeEEEEcCCEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCcee------------
Q 012679 153 NVLAIALGSTVYLWDASD--GTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQ------------ 217 (458)
Q Consensus 153 ~~la~~~d~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~------------ 217 (458)
+.+..|.+.-+++.+... ++..++. +...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~----~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLI----GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEec----CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 356666666677777654 3332222 356899999998777665544 344599998743221
Q ss_pred --eEEecCCCcccEEEEEe-CC--CeEEEEeCCCcEEEEEccCCCeeEEEEc-------ccccceEeEEEcCC--CCEEE
Q 012679 218 --LRTLRGGHRSRVGSLAW-NN--HILTTGGMDGLIINNDVRVRDHIVETYR-------GHNQEVCGLKWSAS--GQQLA 283 (458)
Q Consensus 218 --~~~~~~~~~~~v~~l~~-~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~-------~h~~~v~~l~~spd--~~~l~ 283 (458)
......++......+.. .+ ..++++.....|.++...........+. .-..++..+..+++ ...+.
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 00011124443333333 22 3445555666777765433211011111 11223333333333 45677
Q ss_pred EEECCCcEEEEeCCC--CCCCCcceeeeeecccc-cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe--eEEEeC
Q 012679 284 SGGNDNLLHIWDRSM--ASSNSVTQWLHRLEEHT-SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC--LNSVDT 358 (458)
Q Consensus 284 sg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~~~ 358 (458)
.|+..+...++++.. ........+ ....... .++...... ++. ++.+ .|....+-|...... ...+.-
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~-~~~~~~~~~p~~i~~l~-~~e-~Llc----~~~~~v~Vn~~G~~~~r~~~l~w 242 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLP-FLSEETSLKPISVVQVP-RDE-FLLC----YDEFGVFVNLYGKRRSRNPILHW 242 (302)
T ss_pred EEEcCCCCeEEEEeeccccccccccc-ccccccccCceEEEEEC-CCe-EEEE----ECcEEEEEeCCCCccccceEEEc
Confidence 776643344555433 111000000 0001111 333333333 333 4333 566777777653122 223444
Q ss_pred CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC
Q 012679 359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG 401 (458)
Q Consensus 359 ~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~ 401 (458)
.....++++. ..++++. .++.|.|+++.+++.++++..
T Consensus 243 ~~~p~~~~~~--~pyll~~---~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 243 EFMPESFAYH--SPYLLAF---HDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCcccEEEEE--CCEEEEE---cCCcEEEEECCCCceEEEEec
Confidence 5666777776 3666654 467799999999998888863
No 436
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.28 E-value=4.1 Score=35.69 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=66.1
Q ss_pred CcEEEEeCCCCCCeEEEEECC--CCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCC----CcEEEE---eCC--Cceee
Q 012679 328 SNLLATGGGGGDRCIKFWNTH--TGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ----NQLTLW---KYP--SMVKM 396 (458)
Q Consensus 328 ~~ll~s~~g~~d~~i~lwd~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d----~~i~iw---d~~--~~~~~ 396 (458)
+.|+++. ....|.+|++. ..+.+..+.+-+.|..+.++..|+++++.--... ..+++| ... ...++
T Consensus 29 d~Lfva~---~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAA---SGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEc---CCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 4555543 45789999988 4567788888899999999999999998642111 145553 322 11111
Q ss_pred E-EEeCC---------------------CCcEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCC
Q 012679 397 A-ELSGH---------------------TSRVLFMAQSP-DGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 397 ~-~~~~h---------------------~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
. .+-|| ...+.+++..| .|+.|+ | .++++.+|.+....
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g-~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-G-CGNKLVLFTLKYQT 166 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-E-cCCEEEEEEEEEEE
Confidence 1 12221 34567888888 565554 4 45689999886443
No 437
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.24 E-value=0.55 Score=40.12 Aligned_cols=72 Identities=26% Similarity=0.452 Sum_probs=49.9
Q ss_pred ccceeeccCCCeEEEEcCCEEEEEECCCCC---------------------ee----eEE------E-ec-------CCC
Q 012679 143 YLNLLDWGSSNVLAIALGSTVYLWDASDGT---------------------TS----ELV------T-VD-------DEN 183 (458)
Q Consensus 143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~---------------------~~----~~~------~-~~-------~h~ 183 (458)
+.++++|+.++.++++.+..|+|.+..+.. .. ... . .. ...
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 467899999999999999999999332211 00 000 0 00 001
Q ss_pred CCEEEEEEcCCC------CEEEEEecCCeEEEEeCCC
Q 012679 184 GPVTSVNWAPDG------RHIAIGLNNCQVQLWDSTA 214 (458)
Q Consensus 184 ~~V~~v~~s~~g------~~la~g~~dg~v~iwd~~~ 214 (458)
..|..++|||-| .+||+.+.+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 278999999943 4889999999999998653
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=5.2 Score=41.36 Aligned_cols=180 Identities=10% Similarity=0.102 Sum_probs=93.0
Q ss_pred CeEEEEeCCCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEE--cccccceEeEEEcCCCCE
Q 012679 205 CQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETY--RGHNQEVCGLKWSASGQQ 281 (458)
Q Consensus 205 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~l~~spd~~~ 281 (458)
-.|+||++ +|..+..+.-.|. .+..+.|+ ...|++...+|++++|++-......... ......|..+.+..+|-.
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEec-cccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 35888885 4565655554244 88899996 6889999999999999986433211001 122334555555555543
Q ss_pred EEEEECCCcEEEE-eCCCCCCCCcceeeeeecc-cccceeEEEe---cCC-CCcEEE-EeCCCCCCeEEEEECC--CCCe
Q 012679 282 LASGGNDNLLHIW-DRSMASSNSVTQWLHRLEE-HTSAVKAIAW---CPF-QSNLLA-TGGGGGDRCIKFWNTH--TGAC 352 (458)
Q Consensus 282 l~sg~~dg~i~iw-d~~~~~~~~~~~~~~~~~~-h~~~v~~l~~---~p~-~~~ll~-s~~g~~d~~i~lwd~~--~~~~ 352 (458)
+.+ .+|.+.+- +...... .++.. .......-+| .|. ...+++ ..- ..+ ..+.... +.+.
T Consensus 142 vlt--~~g~v~~i~~~~~~~~-------~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~-~~~~q~~~~~~q~ 209 (829)
T KOG2280|consen 142 VLT--VSGQVILINGVEEPKL-------RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVG-LHICQVEESRVQL 209 (829)
T ss_pred EEe--cCCcEEEEcCCCcchh-------hhCCCCCCccCCCcceeEecCCCcceeEEeech--hhh-hcccceecccccc
Confidence 333 34444443 3222111 11111 0111111222 221 111111 110 000 0111111 1111
Q ss_pred eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe
Q 012679 353 LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS 400 (458)
Q Consensus 353 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~ 400 (458)
..-....+.+..+..||+.++|+.-+ ..|.|.+-+....+...++.
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt--~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYT--ETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEe--cCCcEEEEecchhhhhhccC
Confidence 11112246788899999999999855 78999998887777776665
No 439
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.97 E-value=8.9 Score=36.77 Aligned_cols=83 Identities=17% Similarity=0.061 Sum_probs=45.2
Q ss_pred EEEEEECCCCCeeeEEE-ecCCCCCEEEEEEcCCCCEEEEEecC------------------------------------
Q 012679 162 TVYLWDASDGTTSELVT-VDDENGPVTSVNWAPDGRHIAIGLNN------------------------------------ 204 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~-~~~h~~~V~~v~~s~~g~~la~g~~d------------------------------------ 204 (458)
.+..||..+.++..+.. ..........+ ..-+++..++|+.+
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGF-SLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDY 164 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEE-EEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHc
Confidence 58889998887755432 11111111111 12467778888754
Q ss_pred ---CeEEEEeCCCceeeE--EecCCCcccEEEEEeCCCeEEEEeCC
Q 012679 205 ---CQVQLWDSTANRQLR--TLRGGHRSRVGSLAWNNHILTTGGMD 245 (458)
Q Consensus 205 ---g~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~l~sg~~d 245 (458)
..|.+||..+.+-.. .+..........+..++.+++.|+.+
T Consensus 165 ~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 165 FWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred CccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 468899987764322 22210112233345578888888754
No 440
>PLN02193 nitrile-specifier protein
Probab=92.89 E-value=9 Score=38.61 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=69.5
Q ss_pred EEEEEECCCCCeeeEEEecCCCC--CEEEEEEcCCCCEEEEEecCC-----eEEEEeCCCceeeE--EecC-C-CcccEE
Q 012679 162 TVYLWDASDGTTSELVTVDDENG--PVTSVNWAPDGRHIAIGLNNC-----QVQLWDSTANRQLR--TLRG-G-HRSRVG 230 (458)
Q Consensus 162 ~v~iwd~~~~~~~~~~~~~~h~~--~V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~~~~~~--~~~~-~-~~~~v~ 230 (458)
.+++||..+.++..+........ ........-++.+.+.|+.++ .+.+||+.+.+-.. .+.. . ......
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 58899998877643221100010 111111122556667776543 58889988765332 1110 0 111223
Q ss_pred EEEeCCCeEEEEeCCC-----cEEEEEccCCCeeEEEEc----ccccceEeEEEcCCCCEEEEEECC----CcEEEEeCC
Q 012679 231 SLAWNNHILTTGGMDG-----LIINNDVRVRDHIVETYR----GHNQEVCGLKWSASGQQLASGGND----NLLHIWDRS 297 (458)
Q Consensus 231 ~l~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~----~h~~~v~~l~~spd~~~l~sg~~d----g~i~iwd~~ 297 (458)
....++.+++.|+.++ .+..||+.+..-...... ...... .+.. -++++++.++.+ +.+.+||+.
T Consensus 274 ~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~ 351 (470)
T PLN02193 274 MAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPV 351 (470)
T ss_pred EEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECC
Confidence 3345677888887654 467788776542111100 001111 1221 267777777755 458899987
Q ss_pred CCCC
Q 012679 298 MASS 301 (458)
Q Consensus 298 ~~~~ 301 (458)
+..-
T Consensus 352 t~~W 355 (470)
T PLN02193 352 QDKW 355 (470)
T ss_pred CCEE
Confidence 6543
No 441
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.85 E-value=7.6 Score=35.65 Aligned_cols=196 Identities=12% Similarity=0.054 Sum_probs=117.5
Q ss_pred CcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc-cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCC
Q 012679 225 HRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN-QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303 (458)
Q Consensus 225 ~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~ 303 (458)
-..-+..+.+.+++...+..+.-+++.|+.+...+...-.-.. +--.++. -.|++...+..|.-+.+.|+...+.+.
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCce
Confidence 4456677888899999999999999999998775433221112 2333333 468888888877788899998876632
Q ss_pred cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC---CeeEEEeCCCCeEEEEEcCCCCeEEEEecC
Q 012679 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG---ACLNSVDTGSQVCALLWNKNERELLSSHGF 380 (458)
Q Consensus 304 ~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~ 380 (458)
. .-++......-..++.+- +.-.++. .|+-+.+.|+.+. ..+...+.+..+.++..+++..+++.
T Consensus 163 l---agrya~~~~d~~~v~ISG--n~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv---- 230 (370)
T COG5276 163 L---AGRYALPGGDTHDVAISG--NYAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV---- 230 (370)
T ss_pred e---eeeeccCCCCceeEEEec--CeEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE----
Confidence 2 233333333334556653 4444443 7888999998764 34556666767888888888777776
Q ss_pred CCCcEEEEeCCCceeeEEEe--CCCCc--EEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679 381 TQNQLTLWKYPSMVKMAELS--GHTSR--VLFMAQSPDGCTVASAAADETLRFWNVFGAP 436 (458)
Q Consensus 381 ~d~~i~iwd~~~~~~~~~~~--~h~~~--V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~ 436 (458)
-+.-+.+-|....+....+. ....+ ++.+.. -+++...+..+.-+.+-|+.++.
T Consensus 231 y~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 231 YDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred cccceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCCC
Confidence 23446666665544222221 11111 222233 24444445555555555555443
No 442
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.83 E-value=0.013 Score=56.42 Aligned_cols=130 Identities=18% Similarity=0.286 Sum_probs=91.2
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--C-CeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--N-HILTTGGMDGLIINNDVRVRDHIVET 262 (458)
Q Consensus 186 V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~ 262 (458)
.....|-+.+.-+++++.+-.|..||-.. +...... .+.....++|+ + ..++.+-..+.+.+||+.+.......
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 34456788777799998998899998443 3332332 55666778885 3 45666778899999999765421111
Q ss_pred Ec-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679 263 YR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326 (458)
Q Consensus 263 ~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 326 (458)
+. .|.... +.|++.+..++.|...|.+.|++...... +.....|...+.+++|.+.
T Consensus 114 ~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~------iiv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 114 SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR------IIVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred ccCcchHHH--HhhccCCccccccccccceEEEeccchhh------hhhhcccccceeEEEeccc
Confidence 11 122222 78999999999999999999999777655 4445458999999999984
No 443
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=4 Score=40.32 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=55.5
Q ss_pred ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC-eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKYPSM 393 (458)
Q Consensus 315 ~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~ 393 (458)
.-.|..+..++.|..++.+| .+|.+.++=.+....-..++.+.+ |+|-.+. -+..+++.
T Consensus 103 ~feV~~vl~s~~GS~VaL~G---~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~-i~~~~fts---------------- 162 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIG---IKGLMVMELPKRWGKNSEFEDGKSTVNCRTTP-VAERFFTS---------------- 162 (741)
T ss_pred eEEEEEEEecCCCceEEEec---CCeeEEEEchhhcCccceecCCCceEEEEeec-ccceeecc----------------
Confidence 34577888899887777776 577655543232222222222222 2222222 11222211
Q ss_pred eeeEEEeCCCCcEEEEEEcCCC---CEEEEEeCCCcEEEEecCCCCccccc
Q 012679 394 VKMAELSGHTSRVLFMAQSPDG---CTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 394 ~~~~~~~~h~~~V~~l~~spdg---~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
. ..-.+..++|+|+. ..|+.-+.|.+||+|++.....+...
T Consensus 163 ------s-~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 163 ------S-TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred ------C-CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 1 12235677888864 56777788999999999888777543
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=92.62 E-value=5.9 Score=40.05 Aligned_cols=131 Identities=8% Similarity=0.020 Sum_probs=70.5
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC---eEEEEeCCCceeeEE--ecCCCcccEEEEEeC
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC---QVQLWDSTANRQLRT--LRGGHRSRVGSLAWN 235 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg---~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~ 235 (458)
..+..||..++++..+..+.........+. -+|+..++|+.++ .+..||..+++-... +.. .......+..+
T Consensus 331 ~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~~~~ 407 (480)
T PHA02790 331 TSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY-PHYKSCALVFG 407 (480)
T ss_pred CceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC-ccccceEEEEC
Confidence 467888887777755544442222222222 3677778877654 477898876653321 221 11222344567
Q ss_pred CCeEEEEeCCCcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 012679 236 NHILTTGGMDGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSMA 299 (458)
Q Consensus 236 ~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~~ 299 (458)
+.+.+.|+ .+.+||.++..... ..+....... +++. -+++..+.||.+ ..|.+||..+.
T Consensus 408 ~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 408 RRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 77777774 57789987665321 1111111122 2222 267778888754 34556665543
No 445
>PRK13684 Ycf48-like protein; Provisional
Probab=92.58 E-value=10 Score=36.32 Aligned_cols=233 Identities=10% Similarity=0.067 Sum_probs=112.2
Q ss_pred ccccceeeccCCCeEEEEcCCEEEEEECCCC-CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679 141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDG-TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR 219 (458)
Q Consensus 141 d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~-~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~ 219 (458)
++.++.+.+..+..++++..+.|+.-+ +.| ....+..-....+....+....++..+++ +..|.|..= ...++.-.
T Consensus 89 ~~~l~~v~~~~~~~~~~G~~g~i~~S~-DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~S-~DgG~tW~ 165 (334)
T PRK13684 89 NFRLISISFKGDEGWIVGQPSLLLHTT-DGGKNWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVGAIYRT-TDGGKNWE 165 (334)
T ss_pred ccceeeeEEcCCcEEEeCCCceEEEEC-CCCCCCeEccCCcCCCCCceEEEEECCCcceee-eccceEEEE-CCCCCCce
Confidence 345666777666666777666655432 222 33222110001111222222222333333 344444322 22344333
Q ss_pred EecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCC-CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 220 TLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVR-DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 220 ~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
.+...-...+.++.+. +..++..+..|.+..- .+.+ ..-......-...+.++.+.++++.+++| ..|.+++=...
T Consensus 166 ~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 166 ALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred eCcCCCcceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 3333244567777774 3445555556655432 1112 21122222345678899999999877765 45766532222
Q ss_pred CCCCCCcceeeee-ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe----CCCCeEEEEEcCCCC
Q 012679 298 MASSNSVTQWLHR-LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNKNER 372 (458)
Q Consensus 298 ~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~----~~~~v~~~~~s~~~~ 372 (458)
.+..- +.+.. .......+.++++.|+ ..+++++ .+|.+.. ....|+.-.... .......+.|..+++
T Consensus 244 ~G~sW---~~~~~~~~~~~~~l~~v~~~~~-~~~~~~G---~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~ 315 (334)
T PRK13684 244 DLESW---SKPIIPEITNGYGYLDLAYRTP-GEIWAGG---GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK 315 (334)
T ss_pred CCCcc---ccccCCccccccceeeEEEcCC-CCEEEEc---CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCc
Confidence 32220 00000 0011235678889885 4466655 5665543 334444333322 123577788887777
Q ss_pred eEEEEecCCCCcEEEEe
Q 012679 373 ELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 373 ~l~~~~g~~d~~i~iwd 389 (458)
.+++ | ..|.|..|+
T Consensus 316 ~~~~--G-~~G~il~~~ 329 (334)
T PRK13684 316 GFVL--G-QRGVLLRYV 329 (334)
T ss_pred eEEE--C-CCceEEEec
Confidence 7665 4 567766654
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.54 E-value=4.4 Score=40.09 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=52.3
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEE
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETY 263 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 263 (458)
.|..|..++.|..++..+.+|.+..+=......-..+.. ....|+|=.+. +..|++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eD-gk~~v~CRt~~i~~~~ftss-------------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFED-GKSTVNCRTTPVAERFFTSS-------------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecC-CCceEEEEeecccceeeccC--------------------
Confidence 477888899999999999998655443222222222222 22223332221 11111111
Q ss_pred cccccceEeEEEcCCC---CEEEEEECCCcEEEEeCCCCCC
Q 012679 264 RGHNQEVCGLKWSASG---QQLASGGNDNLLHIWDRSMASS 301 (458)
Q Consensus 264 ~~h~~~v~~l~~spd~---~~l~sg~~dg~i~iwd~~~~~~ 301 (458)
..-.+..++|+|+. ..|..-+.|+.|++||+.....
T Consensus 164 --~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 164 --TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred --CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 11234556788853 6777778888888888776543
No 447
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.46 E-value=0.8 Score=28.27 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=32.2
Q ss_pred CCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEE
Q 012679 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLW 367 (458)
Q Consensus 325 p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~ 367 (458)
|+++.++++.. .++.|.++|..+++.+..+..+.....++|
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 56777888765 688999999999999988887665555555
No 448
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.41 E-value=0.7 Score=28.89 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=25.7
Q ss_pred cceeEEEecCCCC--cEEEEeCCCCCCeEEEEECCC
Q 012679 316 SAVKAIAWCPFQS--NLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 316 ~~v~~l~~~p~~~--~ll~s~~g~~d~~i~lwd~~~ 349 (458)
++|.++.|+|... .+|+..- .-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAE--HQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEc--cCCeEEEEEccc
Confidence 4689999998555 6777765 678999999995
No 449
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.35 E-value=7.6 Score=34.42 Aligned_cols=141 Identities=15% Similarity=0.195 Sum_probs=83.6
Q ss_pred CCCEEEEEEcCCCCEEEEEec-C---------CeEEEEeCCCceeeEEecCCCcccEEEEEeCC---CeEEEEeCCCcEE
Q 012679 183 NGPVTSVNWAPDGRHIAIGLN-N---------CQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN---HILTTGGMDGLII 249 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~-d---------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~ 249 (458)
......-..+|+|++. .|.. | |.++.|-.. ..+..+.. .-.--+.++|+. .+.++-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~-~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWN-CVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeeh-hccCCccccccccCcEEEEEccCceEEe
Confidence 3456667789999984 4432 2 334444321 11222221 222335678852 3455566677787
Q ss_pred EEE--ccCCCe----eEEEEcc----cccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccccee
Q 012679 250 NND--VRVRDH----IVETYRG----HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK 319 (458)
Q Consensus 250 vwd--~~~~~~----~~~~~~~----h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 319 (458)
-|| ..++.. .+..++. ....--+++...+|++.+++-+.++|...|..+++. +..+.-....|+
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~------L~eiklPt~qit 257 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI------LLEIKLPTPQIT 257 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE------EEEEEcCCCceE
Confidence 777 444321 1112211 112233556677899999999999999999999987 777777788999
Q ss_pred EEEecCCCCcEEEE
Q 012679 320 AIAWCPFQSNLLAT 333 (458)
Q Consensus 320 ~l~~~p~~~~ll~s 333 (458)
+++|---+-.++++
T Consensus 258 sccFgGkn~d~~yv 271 (310)
T KOG4499|consen 258 SCCFGGKNLDILYV 271 (310)
T ss_pred EEEecCCCccEEEE
Confidence 99996533344443
No 450
>PLN02153 epithiospecifier protein
Probab=92.32 E-value=11 Score=36.14 Aligned_cols=139 Identities=12% Similarity=0.078 Sum_probs=71.2
Q ss_pred CEEEEEECCCCCeeeEEEecC---CCCCEEEEEEcCCCCEEEEEecC-----------CeEEEEeCCCceeeEEecC---
Q 012679 161 STVYLWDASDGTTSELVTVDD---ENGPVTSVNWAPDGRHIAIGLNN-----------CQVQLWDSTANRQLRTLRG--- 223 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~---h~~~V~~v~~s~~g~~la~g~~d-----------g~v~iwd~~~~~~~~~~~~--- 223 (458)
..+.+||..+.++..+..+.. ........+..-++++.+.|+.+ ..|.+||..+.+-...-..
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~ 180 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGEN 180 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCC
Confidence 368899998887765543311 01111222222356667777653 2578889877653321110
Q ss_pred -CCcccEEEEEeCCCeEEEEeCC-------------CcEEEEEccCCCeeEEEEcc--c-ccceEeEEEcCCCCEEEEEE
Q 012679 224 -GHRSRVGSLAWNNHILTTGGMD-------------GLIINNDVRVRDHIVETYRG--H-NQEVCGLKWSASGQQLASGG 286 (458)
Q Consensus 224 -~~~~~v~~l~~~~~~l~sg~~d-------------g~i~vwd~~~~~~~~~~~~~--h-~~~v~~l~~spd~~~l~sg~ 286 (458)
..........+++++++.|+.+ ..+.+||+.+..-......+ . .....++. ..++++++.|+
T Consensus 181 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG 259 (341)
T PLN02153 181 FEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGG 259 (341)
T ss_pred CCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECc
Confidence 0112223445677777766532 35888998776532111111 0 11111222 22567778887
Q ss_pred CC--------------CcEEEEeCCCCC
Q 012679 287 ND--------------NLLHIWDRSMAS 300 (458)
Q Consensus 287 ~d--------------g~i~iwd~~~~~ 300 (458)
.. +.|..+|+.+..
T Consensus 260 ~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 260 EVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ccCCccccccccccccccEEEEEcCccE
Confidence 52 257778876554
No 451
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.30 E-value=2.4 Score=41.47 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=57.7
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe---CC-----------------
Q 012679 177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---NN----------------- 236 (458)
Q Consensus 177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~---~~----------------- 236 (458)
..+......+.++..+|++++.|+...=|.|.|+|+.++..++..++--...+.-+.- ..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 3445556679999999999999998888999999999999888877632332222221 11
Q ss_pred CeEEEEeCCCcEEEEEccCCCe
Q 012679 237 HILTTGGMDGLIINNDVRVRDH 258 (458)
Q Consensus 237 ~~l~sg~~dg~i~vwd~~~~~~ 258 (458)
-+++-+-.-|.|-||.++.+.+
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCE
Confidence 1344456678888888887665
No 452
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.30 E-value=12 Score=36.50 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=28.1
Q ss_pred EEEeCCCeEEEEeCCC-----------cEEEEEccCCCeeEEEEccc-ccce--EeEEEcCCCCEEEEEECC
Q 012679 231 SLAWNNHILTTGGMDG-----------LIINNDVRVRDHIVETYRGH-NQEV--CGLKWSASGQQLASGGND 288 (458)
Q Consensus 231 ~l~~~~~~l~sg~~dg-----------~i~vwd~~~~~~~~~~~~~h-~~~v--~~l~~spd~~~l~sg~~d 288 (458)
.+..++.+.+.|+... .+..||..+... ..+... .... .+....-++++.+.|+.+
T Consensus 80 ~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W--~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 80 AAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW--QKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEE--EeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 3445677777776532 467788776542 111110 1111 111211467777888754
No 453
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.23 E-value=2.4 Score=41.72 Aligned_cols=137 Identities=16% Similarity=0.207 Sum_probs=85.9
Q ss_pred EEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC-------EEEEEecCCeEEEEeCCC-ceeeEEecC---CC
Q 012679 157 IALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR-------HIAIGLNNCQVQLWDSTA-NRQLRTLRG---GH 225 (458)
Q Consensus 157 ~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~-------~la~g~~dg~v~iwd~~~-~~~~~~~~~---~~ 225 (458)
++....++-.|++.|++ +-...-|.. | -|.|.|+.+ .-++|-.+..|.-.|.+- |..+..... ..
T Consensus 486 g~~~~kLykmDIErGkv--veeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t 561 (776)
T COG5167 486 GGERDKLYKMDIERGKV--VEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT 561 (776)
T ss_pred CCCcccceeeeccccee--eeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence 33446788889999988 444444444 3 677887532 234566665665556543 222222210 01
Q ss_pred cccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 012679 226 RSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA 299 (458)
Q Consensus 226 ~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~ 299 (458)
.....|..- ...++++|+..|.|++||-- +......+.+....|..+..+.+|+++++.+. ..+.+-|+...
T Consensus 562 Kn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ik 634 (776)
T COG5167 562 KNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPIK 634 (776)
T ss_pred cccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecccc
Confidence 122222222 46899999999999999953 33334567778889999999999998877665 57777776543
No 454
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.13 E-value=8.7 Score=40.18 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=70.3
Q ss_pred eeEEEecCC-CCcEEEEeCCCCCCeEEEEECCC-------C-------------CeeEEEeCCCCeEEEEEc--CCCCeE
Q 012679 318 VKAIAWCPF-QSNLLATGGGGGDRCIKFWNTHT-------G-------------ACLNSVDTGSQVCALLWN--KNEREL 374 (458)
Q Consensus 318 v~~l~~~p~-~~~ll~s~~g~~d~~i~lwd~~~-------~-------------~~~~~~~~~~~v~~~~~s--~~~~~l 374 (458)
|..|..... +..+|+.+. .||.|.+|.+.+ . ++...+..+...++++++ ...+.|
T Consensus 103 IN~i~v~~lg~~EVLl~c~--DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCT--DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeEEEecccCCeeEEEEEe--cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence 444444333 234555555 899999997521 0 123344556778999998 777888
Q ss_pred EEEecCCCCcEEEEeCCCc--eeeE-EEeCCCCcEEEEEEcCCC-----C-EEEEEeCCCcEEEEec
Q 012679 375 LSSHGFTQNQLTLWKYPSM--VKMA-ELSGHTSRVLFMAQSPDG-----C-TVASAAADETLRFWNV 432 (458)
Q Consensus 375 ~~~~g~~d~~i~iwd~~~~--~~~~-~~~~h~~~V~~l~~spdg-----~-~l~s~s~Dg~i~iW~~ 432 (458)
+++ .....|.||-+... +... .-..|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 181 AVS--sNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVS--SNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEe--cCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 774 35667777665432 1111 011255668888887633 2 7888899999999988
No 455
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.13 E-value=2.5 Score=46.29 Aligned_cols=139 Identities=15% Similarity=0.219 Sum_probs=85.4
Q ss_pred EECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEe--------cCCCCcEEEEeCCCCCCeEEEEEC----CCCCe
Q 012679 285 GGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW--------CPFQSNLLATGGGGGDRCIKFWNT----HTGAC 352 (458)
Q Consensus 285 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--------~p~~~~ll~s~~g~~d~~i~lwd~----~~~~~ 352 (458)
.+.|+.+.+|++++... ...+.+-...|..+.. -|.-.++|+.+. --.|.++-+ .++..
T Consensus 95 iTiDn~L~lWny~~~~e------~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~ilgV~~~~~~~~~ 165 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNE------LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVILGVSFDEFTGEL 165 (1311)
T ss_pred EEeCCeEEEEEcCCCCc------cccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEEEEEEeccccCcc
Confidence 45788999999998655 4455555555544443 333345555542 334544432 22211
Q ss_pred e-----EEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC--C------cee--------------eEEEe-CCC
Q 012679 353 L-----NSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP--S------MVK--------------MAELS-GHT 403 (458)
Q Consensus 353 ~-----~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~--~------~~~--------------~~~~~-~h~ 403 (458)
- .++.. +..|.++....+|+.+++ | .||.|+=.-+. . ..+ +..+. .+.
T Consensus 166 ~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~--G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 166 SIFNTSFKISVDGVSVNCITYTENGRIFFA--G-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccccceeeecCCceEEEEEeccCCcEEEe--e-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1 12222 566889998889998887 4 45644322221 1 111 11223 566
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679 404 SRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 404 ~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~ 435 (458)
++|..++.......+.+-+..|+|.+|++...
T Consensus 243 dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 79999999988889999999999999999873
No 456
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.12 E-value=5.3 Score=32.10 Aligned_cols=121 Identities=13% Similarity=0.092 Sum_probs=72.8
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCCCCC--cceeeeeecccccceeEEEecC----CCCcEEEEeCCCCCCeEEEEE
Q 012679 273 LKWSASGQQLASGGNDNLLHIWDRSMASSNS--VTQWLHRLEEHTSAVKAIAWCP----FQSNLLATGGGGGDRCIKFWN 346 (458)
Q Consensus 273 l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~p----~~~~ll~s~~g~~d~~i~lwd 346 (458)
-.|.....-|+.++.-|.|.|++........ ....+..+ .-...|++|+-.+ ++..+|+.| ....|..||
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG---t~t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG---TQTSLLAYD 79 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe---ccceEEEEE
Confidence 4565566678888999999999876543211 01112222 3355677776554 245677777 477899999
Q ss_pred CCCCCeeEEEeCCCCeEEEEEcC---CCCeEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679 347 THTGACLNSVDTGSQVCALLWNK---NERELLSSHGFTQNQLTLWKYPSMVKMAEL 399 (458)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~ 399 (458)
+....-+...+....+.++.+-. ....++.. | .+..|.-||....+...+.
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-G-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIV-G-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEE-C-ceEEEEEeCCCCcEEEEEe
Confidence 99887666656666677766632 22333333 3 2455666666555554443
No 457
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.98 E-value=9.6 Score=34.78 Aligned_cols=142 Identities=9% Similarity=0.085 Sum_probs=83.1
Q ss_pred cEEEEEe--CCCeEEEEe---CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe-CCCCCC
Q 012679 228 RVGSLAW--NNHILTTGG---MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD-RSMASS 301 (458)
Q Consensus 228 ~v~~l~~--~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd-~~~~~~ 301 (458)
.+.+.+. ++..++... ....++++... ......+. ...+....|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 4555555 566555544 33345555443 32222222 23788889999988877777677777764 223322
Q ss_pred CCcceeeeeeccc--ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC---CCC------eeEEE-eCCCCeEEEEEcC
Q 012679 302 NSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH---TGA------CLNSV-DTGSQVCALLWNK 369 (458)
Q Consensus 302 ~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~---~~~------~~~~~-~~~~~v~~~~~s~ 369 (458)
. ....... ...|.++.++|++..+++......++.|.+=-+. .+. .+... .....+..+.|.+
T Consensus 101 ~-----~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 101 E-----PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred e-----eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 1 1111111 1289999999999998887643345777766443 231 11111 1245789999999
Q ss_pred CCCeEEEEe
Q 012679 370 NERELLSSH 378 (458)
Q Consensus 370 ~~~~l~~~~ 378 (458)
++..++...
T Consensus 176 ~~~L~V~~~ 184 (253)
T PF10647_consen 176 DSTLVVLGR 184 (253)
T ss_pred CCEEEEEeC
Confidence 998887754
No 458
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.88 E-value=18 Score=37.61 Aligned_cols=168 Identities=12% Similarity=0.151 Sum_probs=87.7
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccE------EEEEe--CCCeEEEEeC-CC---cE
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRV------GSLAW--NNHILTTGGM-DG---LI 248 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v------~~l~~--~~~~l~sg~~-dg---~i 248 (458)
.+.|-.|.|.++++.+++...+|.|++||...+. .+..+...+...+ ..... ...++++.+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5679999999999999999999999999993332 2113332233222 22221 1345554444 32 35
Q ss_pred EEEEccCCCeeEEEEc---ccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEec
Q 012679 249 INNDVRVRDHIVETYR---GHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324 (458)
Q Consensus 249 ~vwd~~~~~~~~~~~~---~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 324 (458)
+++.+......+..+. .+........|.. +|.+..- .++.|.+|++...+..........+......+.++. .
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~ 285 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-P 285 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee-c
Confidence 6666622221122221 1122222233332 4544333 677999999876654211111001111112233332 2
Q ss_pred CCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357 (458)
Q Consensus 325 p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~ 357 (458)
|....++.+ .+..|++.|+.-...+.+++
T Consensus 286 ~s~nRvLLs----~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 PSPNRVLLS----VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCCeEEEE----cCCEEEEEeehhhhhhhhhh
Confidence 233455555 57899999998777666665
No 459
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.58 E-value=15 Score=36.17 Aligned_cols=221 Identities=10% Similarity=0.111 Sum_probs=113.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCce-----eeEEecCCCcccEEEEEeC------CCeEEEEeCCCcEEEEEccCCC-----
Q 012679 194 DGRHIAIGLNNCQVQLWDSTANR-----QLRTLRGGHRSRVGSLAWN------NHILTTGGMDGLIINNDVRVRD----- 257 (458)
Q Consensus 194 ~g~~la~g~~dg~v~iwd~~~~~-----~~~~~~~~~~~~v~~l~~~------~~~l~sg~~dg~i~vwd~~~~~----- 257 (458)
+...|++|+..|.++||+...+. .+-+.. -..+|..+... ....++.=.-..+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 34689999999999999985443 222222 55678777762 2233333455677777773221
Q ss_pred ---eeEEEEcccccc--eEeEEEcC----C-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679 258 ---HIVETYRGHNQE--VCGLKWSA----S-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327 (458)
Q Consensus 258 ---~~~~~~~~h~~~--v~~l~~sp----d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 327 (458)
..+.....|.-. ...+++-| . ..+|.+-+-||.+.+|+-+.... ...+.. ---.-.+++++..
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f------~~~lp~-~llPgPl~Y~~~t 186 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF------SRFLPD-FLLPGPLCYCPRT 186 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE------EEEcCC-CCCCcCeEEeecC
Confidence 112222233222 22222222 2 35788889999999999665432 122221 1122346777754
Q ss_pred CcEEEEeCCCCCCeEEEEECCC--------------------CC---eeEEEeCCCCeEEEE---EcCCCCeEEEEecCC
Q 012679 328 SNLLATGGGGGDRCIKFWNTHT--------------------GA---CLNSVDTGSQVCALL---WNKNERELLSSHGFT 381 (458)
Q Consensus 328 ~~ll~s~~g~~d~~i~lwd~~~--------------------~~---~~~~~~~~~~v~~~~---~s~~~~~l~~~~g~~ 381 (458)
..+++ ++ .+..+..|.... ++ +-.++..+.++..+. ++.....+++.+
T Consensus 187 Dsfvt-~s--ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg--- 260 (418)
T PF14727_consen 187 DSFVT-AS--SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG--- 260 (418)
T ss_pred CEEEE-ec--CceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe---
Confidence 44444 33 566777765421 11 223344455544443 333334444432
Q ss_pred CCcEEEEeCCCceeeEEEeCCCCcEEEEE-E----cCCC---CEEEEEeCCCcEEEEe
Q 012679 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMA-Q----SPDG---CTVASAAADETLRFWN 431 (458)
Q Consensus 382 d~~i~iwd~~~~~~~~~~~~h~~~V~~l~-~----spdg---~~l~s~s~Dg~i~iW~ 431 (458)
...+.+.+.. |......+ ......+++ | ..++ ..++.++.++++.||.
T Consensus 261 er~Lf~l~~~-G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 261 ERSLFCLKDN-GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred cceEEEEcCC-CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 4556666653 33322222 222222222 1 1122 2477788999988875
No 460
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.32 E-value=15 Score=35.75 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=41.8
Q ss_pred CCEEEEEECCC--CCeeeEEEecCC-CCCEEEEEEcCCCCEEEEEecC-----------CeEEEEeCCCceeeEEec-CC
Q 012679 160 GSTVYLWDASD--GTTSELVTVDDE-NGPVTSVNWAPDGRHIAIGLNN-----------CQVQLWDSTANRQLRTLR-GG 224 (458)
Q Consensus 160 d~~v~iwd~~~--~~~~~~~~~~~h-~~~V~~v~~s~~g~~la~g~~d-----------g~v~iwd~~~~~~~~~~~-~~ 224 (458)
+..+.++|+.. .++..+..+... ......+ .-++.+.+.|+.+ ..+..||..+.+-...-. ..
T Consensus 49 ~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v--~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p 126 (376)
T PRK14131 49 GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAA--FIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSP 126 (376)
T ss_pred CCeEEEEECCCCCCCeEECCcCCCCCcccceEE--EECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCC
Confidence 35678888763 445444333211 1111222 2356677777643 247788887654332111 10
Q ss_pred Cc-ccEEEEE-eCCCeEEEEeCC
Q 012679 225 HR-SRVGSLA-WNNHILTTGGMD 245 (458)
Q Consensus 225 ~~-~~v~~l~-~~~~~l~sg~~d 245 (458)
.. .....+. .++.+.+.|+.+
T Consensus 127 ~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 127 VGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CcccceEEEEeeCCEEEEECCCC
Confidence 11 1122333 477888888764
No 461
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.24 E-value=14 Score=35.11 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=55.3
Q ss_pred EEEEeCCCeEEEEeCCC-----cEEEEEccCCCee--EEEEcccccce--EeEEEcCCCCEEEEEEC-----CCcEEEEe
Q 012679 230 GSLAWNNHILTTGGMDG-----LIINNDVRVRDHI--VETYRGHNQEV--CGLKWSASGQQLASGGN-----DNLLHIWD 295 (458)
Q Consensus 230 ~~l~~~~~~l~sg~~dg-----~i~vwd~~~~~~~--~~~~~~h~~~v--~~l~~spd~~~l~sg~~-----dg~i~iwd 295 (458)
.++..++.+++.|+.++ .+..+|+.+.... ...+..-..+. .+++. -++++.+.|+. ...+..||
T Consensus 67 ~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd 145 (323)
T TIGR03548 67 ASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFN 145 (323)
T ss_pred EEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEc
Confidence 34555777778887653 5667777655421 11211111111 11222 25667777774 24678888
Q ss_pred CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC----eEEEEECCCCCee
Q 012679 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR----CIKFWNTHTGACL 353 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~----~i~lwd~~~~~~~ 353 (458)
+.+..-.. +..+... ......+.. .+..+++.|+ .++ .+..||..+.+-.
T Consensus 146 ~~~~~W~~----~~~~p~~-~r~~~~~~~-~~~~iYv~GG--~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 146 LETQEWFE----LPDFPGE-PRVQPVCVK-LQNELYVFGG--GSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCCCCeeE----CCCCCCC-CCCcceEEE-ECCEEEEEcC--CCCccccceEEEecCCCeeE
Confidence 87654321 1111110 111111111 1456777765 332 3568888876543
No 462
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.88 E-value=11 Score=33.17 Aligned_cols=108 Identities=17% Similarity=0.232 Sum_probs=67.2
Q ss_pred CeEEEEeCCCcEEEEEccCCC-eeEEEEcccccceEeEEEcCCCCEEEEEECCC------cEEEE---eCCCCCCCCc--
Q 012679 237 HILTTGGMDGLIINNDVRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDN------LLHIW---DRSMASSNSV-- 304 (458)
Q Consensus 237 ~~l~sg~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg------~i~iw---d~~~~~~~~~-- 304 (458)
+.|+.+...+.|.+|++.... .....+.. -+.|..+.++..|++|++--.++ .+++| +.........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 666666777889999998443 23344433 47899999999999999864322 45554 3221111000
Q ss_pred ---------------cee--eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679 305 ---------------TQW--LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350 (458)
Q Consensus 305 ---------------~~~--~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~ 350 (458)
... +..+ .-..++.+++-+|..+++++. .++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiEl-Pl~~~p~ciaCC~~tG~LlVg----~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIEL-PLSEPPLCIACCPVTGNLLVG----CGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEe-cCCCCCCEEEecCCCCCEEEE----cCCEEEEEEEEEE
Confidence 000 0111 123467899999988888875 4678999987643
No 463
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.81 E-value=8 Score=37.67 Aligned_cols=146 Identities=12% Similarity=0.142 Sum_probs=86.6
Q ss_pred EEEeC-CCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee
Q 012679 231 SLAWN-NHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW 307 (458)
Q Consensus 231 ~l~~~-~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 307 (458)
.+-|+ .+..+.+.+.|.+.-|.+.... .++..-....++|.++.||+|.+.||+--.|+.|.+++....+... ..
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l--~~ 104 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL--EY 104 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh--HH
Confidence 34443 3444444455556666554332 1222223446699999999999999999999999999975443311 11
Q ss_pred eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCC
Q 012679 308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSVD-TGSQVCALLWNKNERELLSSHGFTQN 383 (458)
Q Consensus 308 ~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~ 383 (458)
.++.+..+..|....|... ..+... .+.-+-+|-+...+ .++.++ ....|.-..|.++.+.++.++|-..+
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i----~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n 177 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFI----TDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLEN 177 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEE----ecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccc
Confidence 2233344556888999875 333333 24446666554322 222222 34567788888888888777653333
No 464
>PLN02153 epithiospecifier protein
Probab=90.59 E-value=16 Score=34.90 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=37.7
Q ss_pred EEEEEeCCCeEEEEeCC-----CcEEEEEccCCCee-EEEEcc---ccc-ceEeEEEcCCCCEEEEEECC----------
Q 012679 229 VGSLAWNNHILTTGGMD-----GLIINNDVRVRDHI-VETYRG---HNQ-EVCGLKWSASGQQLASGGND---------- 288 (458)
Q Consensus 229 v~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~~~-~~~~~~---h~~-~v~~l~~spd~~~l~sg~~d---------- 288 (458)
...+.+++.+++.|+.+ ..+.+||+.+..-. +..+.. ... .-.+++ .-++++++.|+.+
T Consensus 79 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~ 157 (341)
T PLN02153 79 VRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPER 157 (341)
T ss_pred eEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcc
Confidence 34456678888888754 25778888765421 111100 001 111222 2356677777753
Q ss_pred -CcEEEEeCCCCC
Q 012679 289 -NLLHIWDRSMAS 300 (458)
Q Consensus 289 -g~i~iwd~~~~~ 300 (458)
..|.+||..+..
T Consensus 158 ~~~v~~yd~~~~~ 170 (341)
T PLN02153 158 FRTIEAYNIADGK 170 (341)
T ss_pred cceEEEEECCCCe
Confidence 247778877654
No 465
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.59 E-value=17 Score=34.92 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=29.7
Q ss_pred EEEEeCCCeEEEEeCC-----------CcEEEEEccCCCeeEEEEc-ccccceEeE-EE-cCCCCEEEEEECC
Q 012679 230 GSLAWNNHILTTGGMD-----------GLIINNDVRVRDHIVETYR-GHNQEVCGL-KW-SASGQQLASGGND 288 (458)
Q Consensus 230 ~~l~~~~~~l~sg~~d-----------g~i~vwd~~~~~~~~~~~~-~h~~~v~~l-~~-spd~~~l~sg~~d 288 (458)
.....++.+.+.|+.+ ..+..||+.+..-. ... .......+. .. .-++++.+.|+.+
T Consensus 58 ~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~--~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 58 VAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ--KLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred eEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe--cCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 3445577888888753 24677887765421 111 111111111 11 2477788888764
No 466
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.32 E-value=1.6 Score=38.84 Aligned_cols=76 Identities=9% Similarity=0.117 Sum_probs=48.9
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec--------ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEE
Q 012679 275 WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE--------EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN 346 (458)
Q Consensus 275 ~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd 346 (458)
+..++.+|++.+.+|.+++||+...+.......+..+- .....|..+....+|.-++. - .+|..+.||
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-l---sng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-L---SNGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-E---eCCCEEEec
Confidence 34578899999999999999999876532221111111 34566778888865554443 3 457778888
Q ss_pred CCCCCeeE
Q 012679 347 THTGACLN 354 (458)
Q Consensus 347 ~~~~~~~~ 354 (458)
..-+.-+.
T Consensus 94 ~~L~~W~~ 101 (219)
T PF07569_consen 94 PDLGCWIR 101 (219)
T ss_pred cccceeEE
Confidence 76554443
No 467
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=13 Score=32.42 Aligned_cols=170 Identities=15% Similarity=0.100 Sum_probs=95.4
Q ss_pred CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCe
Q 012679 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHI 238 (458)
Q Consensus 160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~ 238 (458)
...|++||+.+|+......+.. ..+..=-...-|.++ +..-.+|.-.++|..+.+++..+. ..+.-..++.++..
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~--y~GeGWgLt~d~~~ 142 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS--YEGEGWGLTSDDKN 142 (262)
T ss_pred cceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc--cCCcceeeecCCcc
Confidence 3589999999998744444431 111111111123333 334568888999999999888887 66777888888877
Q ss_pred EEEEeCCCcEEEEEccCCCe---eEEEEccc-ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc------eee
Q 012679 239 LTTGGMDGLIINNDVRVRDH---IVETYRGH-NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT------QWL 308 (458)
Q Consensus 239 l~sg~~dg~i~vwd~~~~~~---~~~~~~~h-~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~------~~~ 308 (458)
|+.++...++..-|.++-.. +..+..+. -..++.+.|- ||...|-.=.+..|...|..+++...-. ..+
T Consensus 143 LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~ 221 (262)
T COG3823 143 LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKEL 221 (262)
T ss_pred eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhc
Confidence 88887777888777654321 11112111 1122334442 4444443333333444444433321000 001
Q ss_pred eeecccccceeEEEecCCCCcEEEEe
Q 012679 309 HRLEEHTSAVKAIAWCPFQSNLLATG 334 (458)
Q Consensus 309 ~~~~~h~~~v~~l~~~p~~~~ll~s~ 334 (458)
..-..|..-.+.+|+.|++..++++|
T Consensus 222 ~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 222 NLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CccccccccccceeecCcCCeEEEec
Confidence 11223455678899999888888886
No 468
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.71 E-value=25 Score=35.75 Aligned_cols=246 Identities=11% Similarity=0.089 Sum_probs=114.5
Q ss_pred CCeEEEEcCCEEEEEECCCCCe-eeEEEecCCCCCEEEEEEcCCC-CEEEEEecCC--eEEEEeCCCceeeEEecCCCcc
Q 012679 152 SNVLAIALGSTVYLWDASDGTT-SELVTVDDENGPVTSVNWAPDG-RHIAIGLNNC--QVQLWDSTANRQLRTLRGGHRS 227 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~-~~~~~~~~h~~~V~~v~~s~~g-~~la~g~~dg--~v~iwd~~~~~~~~~~~~~~~~ 227 (458)
..++.+..+|.++...+..... ..+..+..-....+++.+..+| .+|++|+.-| .+.-|....-+.+..+. .-+
T Consensus 223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~--N~~ 300 (504)
T PF10433_consen 223 DRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP--NWG 300 (504)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE------
T ss_pred CEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc--CcC
Confidence 4577888889988887664331 1122221103345666666554 4777787655 45555544555666666 667
Q ss_pred cEEEEEeC------CC------eEEEEe---CCCcEEEEEccCCCe-eEEEEccc--ccceEeEEEcC-CCCEEEEEECC
Q 012679 228 RVGSLAWN------NH------ILTTGG---MDGLIINNDVRVRDH-IVETYRGH--NQEVCGLKWSA-SGQQLASGGND 288 (458)
Q Consensus 228 ~v~~l~~~------~~------~l~sg~---~dg~i~vwd~~~~~~-~~~~~~~h--~~~v~~l~~sp-d~~~l~sg~~d 288 (458)
+|..++.- .. .|++++ .+|.+++..-.-+-. ........ -..+..+.... ++.+|+.+..+
T Consensus 301 Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~ 380 (504)
T PF10433_consen 301 PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN 380 (504)
T ss_dssp SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS
T ss_pred CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC
Confidence 88888871 11 555553 467787764321111 01111111 23344444322 25577666654
Q ss_pred CcEEEEeCCC---CCCCCcceeee--eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--CCC
Q 012679 289 NLLHIWDRSM---ASSNSVTQWLH--RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--GSQ 361 (458)
Q Consensus 289 g~i~iwd~~~---~~~~~~~~~~~--~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--~~~ 361 (458)
. -+++.+.. ... ...+. .+......+.+-.+. +..++=+ ....|++.+...++....... +..
T Consensus 381 ~-T~vl~~~~~d~~e~---~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQV----t~~~i~l~~~~~~~~~~~w~~~~~~~ 450 (504)
T PF10433_consen 381 E-TRVLQISEGDDGEE---VEEVEEDGFDTDEPTLAAGNVG--DGRIVQV----TPKGIRLIDLEDGKLTQEWKPPAGSI 450 (504)
T ss_dssp E-EEEEEES----SSE---EEEE---TS-SSS-EEEEEEET--TTEEEEE----ESSEEEEEESSSTSEEEEEE-TTS--
T ss_pred c-eEEEEEecccCCcc---hhhhhhccCCCCCCCeEEEEcC--CCeEEEE----ecCeEEEEECCCCeEEEEEeCCCCCe
Confidence 3 44555431 111 00000 121122223222222 2333322 245788998888887776644 334
Q ss_pred eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-C----CCCcEEEEEEcC
Q 012679 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-G----HTSRVLFMAQSP 413 (458)
Q Consensus 362 v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-~----h~~~V~~l~~sp 413 (458)
|.+.+.+ +..++++. .++.+..+.+.......... . ....|.|+...|
T Consensus 451 I~~a~~~--~~~v~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASIN--DPQVLVAL--SGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEES--SSEEEEEE---TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEEC--CCEEEEEE--eCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 5544443 34455433 47788888887665543322 1 457788888766
No 469
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.17 E-value=23 Score=34.40 Aligned_cols=203 Identities=13% Similarity=0.110 Sum_probs=101.2
Q ss_pred cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcc--
Q 012679 150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS-- 227 (458)
Q Consensus 150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~-- 227 (458)
..+.+++...+|.|.-.|.+++...-...+......+.+-.+..+|+ |++++.+|.+..+|..+++.+..... ...
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~-~~~~~ 144 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNV-GGSPY 144 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEec-CCCeE
Confidence 34667777788888888888887421111111011122222222666 78888999999999989998888875 331
Q ss_pred cEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEccc--ccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCCC
Q 012679 228 RVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGH--NQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSNS 303 (458)
Q Consensus 228 ~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h--~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~~ 303 (458)
...........+..++.+|.+...|..++......-..- ...+..-....++ .+..+.. ++.+.-.|...+....
T Consensus 145 ~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 145 YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEee
Confidence 111111123445555577888888877666432211110 1111111111233 3334433 4556666665555421
Q ss_pred cceeeeeecccccceeEEEecC----CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC
Q 012679 304 VTQWLHRLEEHTSAVKAIAWCP----FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG 359 (458)
Q Consensus 304 ~~~~~~~~~~h~~~v~~l~~~p----~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~ 359 (458)
........ +.......-.+.. .+..+.+ + ..++.+...|..+|+.+..+...
T Consensus 224 ~~~~~~~~-~~~~~~~~~~~~~~~v~v~~~~~~-~--~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 224 SQKVSQTI-GRTAISTTPAVDGGPVYVDGGVYA-G--SYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeccc-CcccccccccccCceEEECCcEEE-E--ecCCeEEEEEcCCCceEEEEecc
Confidence 11100111 1110000000000 0122222 2 26777999999999999888764
No 470
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.92 E-value=4.7 Score=39.15 Aligned_cols=163 Identities=18% Similarity=0.129 Sum_probs=96.1
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee-EEecCCCc----ccEE-EEE--eCCCeEEEEeCCCcEEE
Q 012679 179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL-RTLRGGHR----SRVG-SLA--WNNHILTTGGMDGLIIN 250 (458)
Q Consensus 179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~-~~~~~~~~----~~v~-~l~--~~~~~l~sg~~dg~i~v 250 (458)
+..-...|..+-..|||+.|.+-+. ..+.|+++.+.... +++-.... ..|+ .+. -.+.-|+.++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4444567888889999999888766 58888887654321 12211111 1222 111 13567889999999987
Q ss_pred E-EccCCCe----eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679 251 N-DVRVRDH----IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325 (458)
Q Consensus 251 w-d~~~~~~----~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 325 (458)
| |++.... .++.++-...++.-+.-..+.+-+++-+..|++.++.....+. + -+..--..+.-++++|
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~------l-L~~~~~~~~~~~~~Sp 367 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL------L-LFERAYQAPQLVAMSP 367 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc------e-ehhhhhcCcceeeeCc
Confidence 7 5554332 1222222223444343333455677777888888776444332 1 1112223566789999
Q ss_pred CCCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679 326 FQSNLLATGGGGGDRCIKFWNTHTGACL 353 (458)
Q Consensus 326 ~~~~ll~s~~g~~d~~i~lwd~~~~~~~ 353 (458)
++.+++.- ..|.|+++.+.+..+.
T Consensus 368 ~~~~Ll~e----~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 368 NQAYLLSE----DQGKIRLAQLENRNPE 391 (733)
T ss_pred ccchheee----cCCceEEEEecCCCCC
Confidence 98888764 5678999988775543
No 471
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.45 E-value=5.7 Score=29.57 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=32.2
Q ss_pred CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEec
Q 012679 338 GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHG 379 (458)
Q Consensus 338 ~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g 379 (458)
.+|.+.-||..+++....++.-.-.+.++.++++..++++-.
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 678889999999887666666667899999999999988754
No 472
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.18 E-value=22 Score=33.04 Aligned_cols=219 Identities=11% Similarity=0.156 Sum_probs=125.2
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEeCC------Cc-eeeEEecC----CCcccEEEEEeCC--------------CeE
Q 012679 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDST------AN-RQLRTLRG----GHRSRVGSLAWNN--------------HIL 239 (458)
Q Consensus 185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~------~~-~~~~~~~~----~~~~~v~~l~~~~--------------~~l 239 (458)
.-+.|+++|.+.+-++....+...+||.. .. ..+.++.. ......+.+.|++ ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999877777788899999986 12 23333331 0234566677741 236
Q ss_pred EEEeCCCcEEEEEccCCCe----eEEEEc-ccccc-eEeEEEcC--CCCEEEEE-ECCCcEEEEeCCCCCCCCcceeeee
Q 012679 240 TTGGMDGLIINNDVRVRDH----IVETYR-GHNQE-VCGLKWSA--SGQQLASG-GNDNLLHIWDRSMASSNSVTQWLHR 310 (458)
Q Consensus 240 ~sg~~dg~i~vwd~~~~~~----~~~~~~-~h~~~-v~~l~~sp--d~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~ 310 (458)
+.+++||+|.-|....... ....+. +.... -..+++.. .+.+|..+ -..++|.|+|-.-...... ..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~----g~ 179 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP----GS 179 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC----CC
Confidence 7889999999998643322 112221 11222 34555543 24555444 3578899998543321100 00
Q ss_pred ecccccceeEEEecCC-----CCcEEEEeC-----------CCCCCeEEEEECCCCCeeEEEeCCCC---eEEEEEcC--
Q 012679 311 LEEHTSAVKAIAWCPF-----QSNLLATGG-----------GGGDRCIKFWNTHTGACLNSVDTGSQ---VCALLWNK-- 369 (458)
Q Consensus 311 ~~~h~~~v~~l~~~p~-----~~~ll~s~~-----------g~~d~~i~lwd~~~~~~~~~~~~~~~---v~~~~~s~-- 369 (458)
+.... | -.-|.|. +..|+++-. |..-|.|-++|+ .|..++.+..... .+.++..|
T Consensus 180 F~DP~--i-PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 180 FIDPA--L-PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred ccCCC--C-CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhh
Confidence 10000 0 0011110 122332211 234578999997 5778887765543 45566644
Q ss_pred ----CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC------cEEEEEEcC
Q 012679 370 ----NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS------RVLFMAQSP 413 (458)
Q Consensus 370 ----~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~------~V~~l~~sp 413 (458)
.+..|+- .+.||+|..||..+++.+..+....+ .++.|+|..
T Consensus 256 FG~~sg~lLVG--NFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 256 FGSLSGALLVG--NFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hCCCCCCeEEe--ecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3455555 55699999999999998888875443 356777764
No 473
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.16 E-value=11 Score=34.88 Aligned_cols=89 Identities=20% Similarity=0.394 Sum_probs=56.8
Q ss_pred CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe------cCCeEEEEeCCCceeeEEecC----CCcccEE
Q 012679 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL------NNCQVQLWDSTANRQLRTLRG----GHRSRVG 230 (458)
Q Consensus 161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~------~dg~v~iwd~~~~~~~~~~~~----~~~~~v~ 230 (458)
..|++||..+.++.... .+-.+.|+++.|..+.+.++.|. ....+..||..+... ..+.. .-.++|.
T Consensus 16 ~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEE
Confidence 47999999988874433 23467899999997777777764 345788999887653 23332 1346788
Q ss_pred EEEe---CCC-eEEEEe-CCC--cEEEEE
Q 012679 231 SLAW---NNH-ILTTGG-MDG--LIINND 252 (458)
Q Consensus 231 ~l~~---~~~-~l~sg~-~dg--~i~vwd 252 (458)
.+.+ +.. +.+.|. .+| .|..||
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEc
Confidence 8887 443 444443 233 345554
No 474
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.95 E-value=43 Score=36.15 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=97.2
Q ss_pred ccccceEeEEEc---C----CCCEEEEEECCCcEEEEeCCCCCC---------CCcceeeeeecc---cccceeEEEecC
Q 012679 265 GHNQEVCGLKWS---A----SGQQLASGGNDNLLHIWDRSMASS---------NSVTQWLHRLEE---HTSAVKAIAWCP 325 (458)
Q Consensus 265 ~h~~~v~~l~~s---p----d~~~l~sg~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~---h~~~v~~l~~~p 325 (458)
....+|..|+|. . ..++|++= ....+.|+...-... .....++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 345677778877 2 22355443 445677776221111 011122333332 234677899999
Q ss_pred CCCcEEEEeCCCCCCeEEEEECCCCC------ee------EEE-e---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679 326 FQSNLLATGGGGGDRCIKFWNTHTGA------CL------NSV-D---TGSQVCALLWNKNERELLSSHGFTQNQLTLWK 389 (458)
Q Consensus 326 ~~~~ll~s~~g~~d~~i~lwd~~~~~------~~------~~~-~---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd 389 (458)
+...-+|.-. ..|...||++..+. .. ..+ . ..+....+.|.++...|+++ +...+.++|
T Consensus 156 ~~~~q~AiVD--~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~---~r~~l~~~d 230 (765)
T PF10214_consen 156 WDQRQFAIVD--EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC---NRSKLMLID 230 (765)
T ss_pred CccceEEEEe--ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE---cCCceEEEE
Confidence 8888888776 88999999992111 10 111 0 11234588898888888875 467899999
Q ss_pred CCCceeeE--EEeCCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEecCCC
Q 012679 390 YPSMVKMA--ELSGHTSRVLFMAQSPD--GCTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 390 ~~~~~~~~--~~~~h~~~V~~l~~spd--g~~l~s~s~Dg~i~iW~~~~~ 435 (458)
+.+..... ........|..+.-+|+ +..++-.+ ..|...++...
T Consensus 231 ~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~~ 278 (765)
T PF10214_consen 231 FESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKSS 278 (765)
T ss_pred CCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccCC
Confidence 98776533 12234577999999887 33333322 56777777764
No 475
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.81 E-value=23 Score=32.89 Aligned_cols=206 Identities=13% Similarity=0.122 Sum_probs=113.9
Q ss_pred EEEEEeC--CCeEEEEeCCCcEEEEEcc------CCCeeEEEEcc-----cccceEeEEEcCCCC------------EEE
Q 012679 229 VGSLAWN--NHILTTGGMDGLIINNDVR------VRDHIVETYRG-----HNQEVCGLKWSASGQ------------QLA 283 (458)
Q Consensus 229 v~~l~~~--~~~l~sg~~dg~i~vwd~~------~~~~~~~~~~~-----h~~~v~~l~~spd~~------------~l~ 283 (458)
-+.|+++ +.+-++....+...+||.. ..+.++..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3456665 3556666667888999986 22333444432 234577788875332 367
Q ss_pred EEECCCcEEEEeCCCCCCCCcceeeeeeccc-ccc-eeEEEecC--CCCcEEEEeCCCCCCeEEEEECCCCCeeE--EE-
Q 012679 284 SGGNDNLLHIWDRSMASSNSVTQWLHRLEEH-TSA-VKAIAWCP--FQSNLLATGGGGGDRCIKFWNTHTGACLN--SV- 356 (458)
Q Consensus 284 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-~~~-v~~l~~~p--~~~~ll~s~~g~~d~~i~lwd~~~~~~~~--~~- 356 (458)
.+++||+|.=|............ ...+... ... -+.+++.. .+..|.++-- ..++|.++|-.-.+... .+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~-~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRA-EIVVDASQQGNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEeCCceEEeecCcCCccccccc-EEEEccCCCcceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCCcc
Confidence 78899999999854333200000 1122211 122 34555553 3456666655 78999999865332210 01
Q ss_pred ----eCC----------CC--eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe--CCCCcEEEEEEcC-----
Q 012679 357 ----DTG----------SQ--VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS--GHTSRVLFMAQSP----- 413 (458)
Q Consensus 357 ----~~~----------~~--v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~--~h~~~V~~l~~sp----- 413 (458)
..+ .. |+-..-.++.+.=+. |-..|.|-+||.. +..+..+. +.-...+.|+..|
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~--G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA--GAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCccccccc--CCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCC
Confidence 000 00 111112222222222 4446789999974 55555552 3335567788866
Q ss_pred -CCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679 414 -DGCTVASAAADETLRFWNVFGAPQVIS 440 (458)
Q Consensus 414 -dg~~l~s~s~Dg~i~iW~~~~~~~~~~ 440 (458)
.|.+|+--=.||+|..+|..++...-.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeee
Confidence 567777666799999999887765443
No 476
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.41 E-value=14 Score=29.81 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=64.4
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCc--------eeeEEecCCCcccEEEEEe---C----CCeEEEEeCCCcEEEEE
Q 012679 188 SVNWAPDGRHIAIGLNNCQVQLWDSTAN--------RQLRTLRGGHRSRVGSLAW---N----NHILTTGGMDGLIINND 252 (458)
Q Consensus 188 ~v~~s~~g~~la~g~~dg~v~iwd~~~~--------~~~~~~~~~~~~~v~~l~~---~----~~~l~sg~~dg~i~vwd 252 (458)
.-.|......|++++.-|+|.|++.... ..++.+. -...|++|+- . ...|+.|+. ..+..||
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 3456666667899999999999987533 2344444 4566777754 2 366777665 5688999
Q ss_pred ccCCCeeEEEEcccccceEeEEEc---CCCCEEEEEECCCcEEEEeCCC
Q 012679 253 VRVRDHIVETYRGHNQEVCGLKWS---ASGQQLASGGNDNLLHIWDRSM 298 (458)
Q Consensus 253 ~~~~~~~~~~~~~h~~~v~~l~~s---pd~~~l~sg~~dg~i~iwd~~~ 298 (458)
+.....+ .++.-...|.++.+- ....-|+..+.+..|.-||...
T Consensus 80 V~~N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 80 VENNSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cccCchh--hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 9866542 223334556666652 2223344444446677676544
No 477
>PLN02193 nitrile-specifier protein
Probab=87.37 E-value=35 Score=34.43 Aligned_cols=156 Identities=8% Similarity=0.011 Sum_probs=72.4
Q ss_pred CCCEEEEEecC-------CeEEEEeCCCceeeEEecC---CCc--ccEEEEEeCCCeEEEEeCCC-----cEEEEEccCC
Q 012679 194 DGRHIAIGLNN-------CQVQLWDSTANRQLRTLRG---GHR--SRVGSLAWNNHILTTGGMDG-----LIINNDVRVR 256 (458)
Q Consensus 194 ~g~~la~g~~d-------g~v~iwd~~~~~~~~~~~~---~~~--~~v~~l~~~~~~l~sg~~dg-----~i~vwd~~~~ 256 (458)
++..++.|+.+ ..+.+||+.+.+-...-.. ... .....+..++.+++.|+.++ .+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 45566666643 2477888877653321110 011 12233455777888887653 5788888765
Q ss_pred CeeE-EEEc--ccccceEeEEEcCCCCEEEEEECCC-----cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679 257 DHIV-ETYR--GHNQEVCGLKWSASGQQLASGGNDN-----LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS 328 (458)
Q Consensus 257 ~~~~-~~~~--~h~~~v~~l~~spd~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 328 (458)
.... .... .....-.++.. -++++++.|+.++ .+..||+.+..-.....+ ............+.+ +.
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~~~~R~~~~~~~~---~g 329 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTP-GDSFSIRGGAGLEVV---QG 329 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCC-CCCCCCCCCcEEEEE---CC
Confidence 4311 1110 00111112222 2566677777543 466777765432110000 000000111111222 24
Q ss_pred cEEEEeCCC--CCCeEEEEECCCCCeeE
Q 012679 329 NLLATGGGG--GDRCIKFWNTHTGACLN 354 (458)
Q Consensus 329 ~ll~s~~g~--~d~~i~lwd~~~~~~~~ 354 (458)
.+++.++.. .-..+.+||+.+.+...
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQ 357 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEE
Confidence 566665411 12468999998876544
No 478
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.11 E-value=15 Score=34.04 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=68.3
Q ss_pred CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE------CCCcEEEEeCCCCCCCCcceeeeeecc-----c
Q 012679 246 GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG------NDNLLHIWDRSMASSNSVTQWLHRLEE-----H 314 (458)
Q Consensus 246 g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~~~~-----h 314 (458)
..|++||....+. ...-.+-.+.|..+.|..+.++++.|. ....+..||...... ..+.. -
T Consensus 16 ~~lC~yd~~~~qW-~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-------~~~~~~~s~~i 87 (281)
T PF12768_consen 16 PGLCLYDTDNSQW-SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-------SSLGGGSSNSI 87 (281)
T ss_pred CEEEEEECCCCEe-ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-------eecCCcccccC
Confidence 4689999876653 233334567899999987777777664 355688899877653 12222 2
Q ss_pred ccceeEEEecC-CCCcEEEEeC-CCCCCeEEEEECCCCCeeEE--EeCCCCeEEEEEc
Q 012679 315 TSAVKAIAWCP-FQSNLLATGG-GGGDRCIKFWNTHTGACLNS--VDTGSQVCALLWN 368 (458)
Q Consensus 315 ~~~v~~l~~~p-~~~~ll~s~~-g~~d~~i~lwd~~~~~~~~~--~~~~~~v~~~~~s 368 (458)
.++|..+.+.. +...+.+.|. ...+..|..||-.+...+.. +.....|..+.+-
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 46787877743 3445655543 12344577887665554443 2223445555443
No 479
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.11 E-value=2.4 Score=41.01 Aligned_cols=169 Identities=15% Similarity=0.077 Sum_probs=91.3
Q ss_pred EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee-cc-ccccee-EEEecCCCCcEEEEeCCC
Q 012679 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EE-HTSAVK-AIAWCPFQSNLLATGGGG 337 (458)
Q Consensus 261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~-h~~~v~-~l~~~p~~~~ll~s~~g~ 337 (458)
+.+..-...|..+-..|||+.|..-+. ..+.|+++.+...... + +... .+ ....|+ ++..-.-+..+++ ++
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-k-l~~dspg~~~~~Vte~l~lL~Gg~SLLv-~~-- 287 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-K-LVDDSPGDSRHQVTEQLYLLSGGFSLLV-VH-- 287 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-h-hhhcCCCchHHHHHHHHHHHhCceeEEE-Ec--
Confidence 334445567788889999998877665 7888998876544211 0 1111 11 001122 1111222334444 33
Q ss_pred CCCeEEEE-ECCCCCe-----eEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEE
Q 012679 338 GDRCIKFW-NTHTGAC-----LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMA 410 (458)
Q Consensus 338 ~d~~i~lw-d~~~~~~-----~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~ 410 (458)
.||-|.-| |.+.+.. ++.++. +.++..+.-..+.+-+++ =+.+|++.++.....+.+.. +.-...+..++
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~--l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~ 364 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYS--LYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVA 364 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEE--EcCCCceeeeecccCcceeh-hhhhcCcceee
Confidence 78888777 5544321 111221 233333333333344444 33677777766544333321 11223566789
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 012679 411 QSPDGCTVASAAADETLRFWNVFGAPQVI 439 (458)
Q Consensus 411 ~spdg~~l~s~s~Dg~i~iW~~~~~~~~~ 439 (458)
+||++.+|++- ..|.++++.+.+..+..
T Consensus 365 ~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 365 MSPNQAYLLSE-DQGKIRLAQLENRNPEI 392 (733)
T ss_pred eCcccchheee-cCCceEEEEecCCCCCc
Confidence 99999999854 55789999998765543
No 480
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.53 E-value=11 Score=41.66 Aligned_cols=141 Identities=11% Similarity=0.149 Sum_probs=84.3
Q ss_pred ecCCeEEEEeCCCceeeEEecCCCcccEEEEEe---CC-------CeEEEEeCCCcEEEEEccCCCe--eEE------EE
Q 012679 202 LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---NN-------HILTTGGMDGLIINNDVRVRDH--IVE------TY 263 (458)
Q Consensus 202 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~---~~-------~~l~sg~~dg~i~vwd~~~~~~--~~~------~~ 263 (458)
+.|..+.+|+.+++.....+.+ ....|..+.. .+ .+++.-+.--.|.++-+.-... ... .+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~-~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDG-LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccc-hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 4577899999999887777776 6667766665 11 2333333444555554432211 011 12
Q ss_pred cccccceEeEEEcCCCCEEEEEECCCcEEEEeCC----CCC----CC----------Ccceeeeeec-ccccceeEEEec
Q 012679 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS----MAS----SN----------SVTQWLHRLE-EHTSAVKAIAWC 324 (458)
Q Consensus 264 ~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~----~~~----~~----------~~~~~~~~~~-~h~~~v~~l~~~ 324 (458)
......|.++....+|+.|.+| .||. +|.+. .+= +. .....+..+. .+..+|..++..
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 2235578899988888877766 4553 44321 110 00 0001122333 567799999998
Q ss_pred CCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 325 PFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 325 p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
. ...++.+-+ ..++|.+||+..
T Consensus 252 ~-SR~IlY~ls--ek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 N-SRNILYVLS--EKGTVSAYDIGG 273 (1311)
T ss_pred c-ccceeeeec--cCceEEEEEccC
Confidence 7 577777765 899999999976
No 481
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.08 E-value=19 Score=37.14 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=40.0
Q ss_pred CCCeEEEEeCCCcEEEEEccC---C-CeeEEEE-cc--------------------cccceEeEEEcC----CCCEEEEE
Q 012679 235 NNHILTTGGMDGLIINNDVRV---R-DHIVETY-RG--------------------HNQEVCGLKWSA----SGQQLASG 285 (458)
Q Consensus 235 ~~~~l~sg~~dg~i~vwd~~~---~-~~~~~~~-~~--------------------h~~~v~~l~~sp----d~~~l~sg 285 (458)
++..++.+..||.+....... . ....... .. ....+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 677888888888887777654 1 1111111 10 123455566666 67888899
Q ss_pred ECCCcEEEEeCCCCCC
Q 012679 286 GNDNLLHIWDRSMASS 301 (458)
Q Consensus 286 ~~dg~i~iwd~~~~~~ 301 (458)
+.|+.+++||+.++..
T Consensus 237 ~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQC 252 (547)
T ss_dssp ETTSEEEEEETTTTCE
T ss_pred eCCCeEEEEECCCCeE
Confidence 9999999999888766
No 482
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.66 E-value=25 Score=38.07 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=80.8
Q ss_pred CEEEEEECC-CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCC-cccEEEEEeCCCe
Q 012679 161 STVYLWDAS-DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGH-RSRVGSLAWNNHI 238 (458)
Q Consensus 161 ~~v~iwd~~-~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~-~~~v~~l~~~~~~ 238 (458)
|.++.|+.- .|+...+..-..-.+.|. +..|.+.++.+|-.+ .+++||+...+.++.....+ ...|..+.|.+..
T Consensus 912 g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~LagvG~-~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~R 988 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAGVGR-FLRLYDLGKKKLLRKCELKFIPNRISSIQTYGAR 988 (1205)
T ss_pred CceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEeccc-EEEEeeCChHHHHhhhhhccCceEEEEEeecceE
Confidence 457777643 333222221112234444 445656677766544 89999999888877665434 7889999999999
Q ss_pred EEEEeCCCcEEEEEccCCCeeEEEEcc--cccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679 239 LTTGGMDGLIINNDVRVRDHIVETYRG--HNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297 (458)
Q Consensus 239 l~sg~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~ 297 (458)
++.|...-.+..+-.+........+.. -...|+++.+- |...+|.|..=|.+.+-.+.
T Consensus 989 I~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 989 IVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 999987666665555443332333332 23456666654 55567777766666665543
No 483
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.15 E-value=35 Score=32.43 Aligned_cols=164 Identities=14% Similarity=0.165 Sum_probs=92.0
Q ss_pred ccceEeEEEcCCCCEEEEEECCCc------EEEEeCCCCCC-CC--cceeeeeeccccc--------ceeEEEecCCCCc
Q 012679 267 NQEVCGLKWSASGQQLASGGNDNL------LHIWDRSMASS-NS--VTQWLHRLEEHTS--------AVKAIAWCPFQSN 329 (458)
Q Consensus 267 ~~~v~~l~~spd~~~l~sg~~dg~------i~iwd~~~~~~-~~--~~~~~~~~~~h~~--------~v~~l~~~p~~~~ 329 (458)
-+.+.+|.+.+++..+++.+.+|. +..+++..... .. .......+....+ ...+|++.++ ..
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~-g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPD-GS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecC-CC
Confidence 356788889876667777777777 66666554111 00 0000111111111 3457888554 45
Q ss_pred EEEEeCCCCC------CeEEEEECCCCCeeEEEe----------------CCCCeEEEEEcCCCCeEEEEecCC---CC-
Q 012679 330 LLATGGGGGD------RCIKFWNTHTGACLNSVD----------------TGSQVCALLWNKNERELLSSHGFT---QN- 383 (458)
Q Consensus 330 ll~s~~g~~d------~~i~lwd~~~~~~~~~~~----------------~~~~v~~~~~s~~~~~l~~~~g~~---d~- 383 (458)
++++.- .+ ..|..++.. |+.+..+. .+...-+++++|+|+.|+++.-.. |+
T Consensus 98 ~~is~E--~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 98 FWISSE--GGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred EEEEeC--CccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 555543 44 678888866 66554442 223477999999999766654221 21
Q ss_pred --------cEEEEeC--CC-ceeeEE----EeC-----CCCcEEEEEEcCCCCEEEEEe-----CCCcEEEEecCC
Q 012679 384 --------QLTLWKY--PS-MVKMAE----LSG-----HTSRVLFMAQSPDGCTVASAA-----ADETLRFWNVFG 434 (458)
Q Consensus 384 --------~i~iwd~--~~-~~~~~~----~~~-----h~~~V~~l~~spdg~~l~s~s-----~Dg~i~iW~~~~ 434 (458)
.++|+.+ .+ +....+ +.. ....|..+.+-+++++|+.== ....++|+.+.-
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence 1555544 33 222222 222 346788999999999776432 244666766653
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.96 E-value=39 Score=32.74 Aligned_cols=186 Identities=15% Similarity=0.198 Sum_probs=103.6
Q ss_pred CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEc----CCCCE--EEEEEC-C---CcEEEEeCCCCCCCCcce
Q 012679 237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWS----ASGQQ--LASGGN-D---NLLHIWDRSMASSNSVTQ 306 (458)
Q Consensus 237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s----pd~~~--l~sg~~-d---g~i~iwd~~~~~~~~~~~ 306 (458)
.+++....++-+.+||+.... +..+. .+.++.+..- -+|+. |+.+++ + +.|++|.+......
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~--lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~---- 140 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKE--LQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE---- 140 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-E--EEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE----
T ss_pred ceEEEEeCCCCEEEEcCCCcE--EEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc----
Confidence 577778888999999997543 34443 2333333321 13433 444443 2 57999977542210
Q ss_pred eeeeecc-------cccceeEEEe--cCC-CCcEEEEeCCCCCCeEEEEECC---CC----CeeEEEeCCCCeEEEEEcC
Q 012679 307 WLHRLEE-------HTSAVKAIAW--CPF-QSNLLATGGGGGDRCIKFWNTH---TG----ACLNSVDTGSQVCALLWNK 369 (458)
Q Consensus 307 ~~~~~~~-------h~~~v~~l~~--~p~-~~~ll~s~~g~~d~~i~lwd~~---~~----~~~~~~~~~~~v~~~~~s~ 369 (458)
+..+.. ....+..+|+ +|. +...+.... .+|.+..|.+. .+ +.++.+...+++..+....
T Consensus 141 -L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~--k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDD 217 (381)
T PF02333_consen 141 -LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG--KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDD 217 (381)
T ss_dssp -EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE--TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEET
T ss_pred -ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec--CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEec
Confidence 222211 1223566665 443 333444443 78888777664 33 3688888999999999999
Q ss_pred CCCeEEEEecCCCCcEEEEeCC-----CceeeEEEeC--CCCcEEEEEEc--CCC--CEEEEEeCCCcEEEEecCCC
Q 012679 370 NERELLSSHGFTQNQLTLWKYP-----SMVKMAELSG--HTSRVLFMAQS--PDG--CTVASAAADETLRFWNVFGA 435 (458)
Q Consensus 370 ~~~~l~~~~g~~d~~i~iwd~~-----~~~~~~~~~~--h~~~V~~l~~s--pdg--~~l~s~s~Dg~i~iW~~~~~ 435 (458)
....|+. |.++--|.-|+.. ..+.+....+ ....|-.|++- ++| -+|+|.-.+++..||+-...
T Consensus 218 e~g~LYv--gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 218 ETGRLYV--GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTTEEEE--EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ccCCEEE--ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998 5466556666654 1233433333 34567777774 343 34455556889999998754
No 485
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.82 E-value=5.5 Score=24.31 Aligned_cols=41 Identities=10% Similarity=0.044 Sum_probs=28.7
Q ss_pred CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ 411 (458)
Q Consensus 369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 411 (458)
|+++.++++. ..++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~-~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTN-SGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEe-CCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677777764 36889999999998888877653 22334544
No 486
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.70 E-value=42 Score=32.92 Aligned_cols=111 Identities=9% Similarity=0.177 Sum_probs=63.3
Q ss_pred ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc--cccceeEEEecCCCCcEEEEeCCCCCCeEEE
Q 012679 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE--HTSAVKAIAWCPFQSNLLATGGGGGDRCIKF 344 (458)
Q Consensus 267 ~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l 344 (458)
...+.++.|.+++..++++ .+|.+.. ....+..-.... ...... ....+.++.+.++ ..++++| ..|.+..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~-f~~~~~~~~~~~l~~v~~~~d-~~~~a~G---~~G~v~~ 352 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD-FEEADIKSRGFGILDVGYRSK-KEAWAAG---GSGILLR 352 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc-eeecccCCCCcceEEEEEcCC-CcEEEEE---CCCcEEE
Confidence 4568899999998877665 5565543 322322100000 111111 2235888989875 5667766 5776655
Q ss_pred EECCCCCeeEEEe----CCCCeEEEEEcCCCCeEEEEecCCCCcEEEE
Q 012679 345 WNTHTGACLNSVD----TGSQVCALLWNKNERELLSSHGFTQNQLTLW 388 (458)
Q Consensus 345 wd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw 388 (458)
.. ..|+.-.... .......+.|.++++-+++ | .+|.|.-|
T Consensus 353 s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~--G-~~G~il~~ 396 (398)
T PLN00033 353 ST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL--G-NDGVLLRY 396 (398)
T ss_pred eC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE--e-CCcEEEEe
Confidence 53 3444323222 2456789999888777776 4 56666544
No 487
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.66 E-value=7.9 Score=32.97 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=25.6
Q ss_pred CcEEEEEEcCC------CCEEEEEeCCCcEEEEecCC
Q 012679 404 SRVLFMAQSPD------GCTVASAAADETLRFWNVFG 434 (458)
Q Consensus 404 ~~V~~l~~spd------g~~l~s~s~Dg~i~iW~~~~ 434 (458)
..|.+++|||- +.+|++.+.+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 47899999994 35788889999999998654
No 488
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.58 E-value=4.6 Score=24.40 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=20.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEecC---CeEEEE
Q 012679 182 ENGPVTSVNWAPDGRHIAIGLNN---CQVQLW 210 (458)
Q Consensus 182 h~~~V~~v~~s~~g~~la~g~~d---g~v~iw 210 (458)
....-....|+|||++|+.++.. |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 35567889999999998877654 555555
No 489
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.16 E-value=8.9 Score=39.50 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=45.0
Q ss_pred cCCCeEEEEcCCEEEEEECCC----CCeeeEEEecC--------------------CCCCEEEEEEcC----CCCEEEEE
Q 012679 150 GSSNVLAIALGSTVYLWDASD----GTTSELVTVDD--------------------ENGPVTSVNWAP----DGRHIAIG 201 (458)
Q Consensus 150 ~~~~~la~~~d~~v~iwd~~~----~~~~~~~~~~~--------------------h~~~V~~v~~s~----~g~~la~g 201 (458)
++..++.+..||.+....... +.......+.. ....+..++.+. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 557777777888877776553 21111111111 124466677776 77899999
Q ss_pred ecCCeEEEEeCCCceeeEEec
Q 012679 202 LNNCQVQLWDSTANRQLRTLR 222 (458)
Q Consensus 202 ~~dg~v~iwd~~~~~~~~~~~ 222 (458)
+.|+.+++||+.+++++.+..
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999977654
No 490
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=83.99 E-value=1.5 Score=46.07 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=58.4
Q ss_pred CeEEEEeCCCceeeEEecCCCcccEEEEEe-C---CCeEEEEeCCCcEEEEEccCCC------eeEEEEcccccceEeEE
Q 012679 205 CQVQLWDSTANRQLRTLRGGHRSRVGSLAW-N---NHILTTGGMDGLIINNDVRVRD------HIVETYRGHNQEVCGLK 274 (458)
Q Consensus 205 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~---~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~~h~~~v~~l~ 274 (458)
+.+++-+..+...-..+..+..+.|..+.| + +... -.-|.+.|||+..-+ ..+.........+.-+.
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH---HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 345555544332222333335666777776 1 1211 333677888875321 11222223333445555
Q ss_pred EcC---CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679 275 WSA---SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325 (458)
Q Consensus 275 ~sp---d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 325 (458)
|.| +.-++..+-.++.|++..++.... ..+..|...+..++|-.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-------~l~rsHs~~~~d~a~~~ 234 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-------SLFRSHSQRVTDMAFFA 234 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-------HHHHhcCCCcccHHHHh
Confidence 555 667778888888888877654432 23445776666666544
No 491
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.26 E-value=31 Score=30.21 Aligned_cols=173 Identities=12% Similarity=0.152 Sum_probs=90.5
Q ss_pred CCCEEEEEecC--CeEEEEeCCCceeeEEecCCCcccEEE---EEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc
Q 012679 194 DGRHIAIGLNN--CQVQLWDSTANRQLRTLRGGHRSRVGS---LAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ 268 (458)
Q Consensus 194 ~g~~la~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~v~~---l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~ 268 (458)
+|.++.+.+.- ..|++||+.+++.+...... ...+.. ..+......-.-.+|.-..+|.++-+.+ ..+ ...+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~l-g~~-~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEEL-GRF-SYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhh-ccc-ccCC
Confidence 45555554433 37999999999887766532 111111 1112223333445777788888765432 211 1233
Q ss_pred ceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679 269 EVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT 347 (458)
Q Consensus 269 ~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~ 347 (458)
+-.+++ .|+..|+.+....+++.-|..+....... ..++.+ .-..++.+.|-. ..++|--- .+..|...|.
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v--~VT~~g~pv~~LNELE~Vd--G~lyANVw--~t~~I~rI~p 203 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTV--QVTDDGVPVSKLNELEWVD--GELYANVW--QTTRIARIDP 203 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHHhhhcceE--EEEECCeecccccceeeec--cEEEEeee--eecceEEEcC
Confidence 344444 46666777666667777776554432111 111111 112233444443 33333222 4455666777
Q ss_pred CCCCeeEEEeCC-------------CCeEEEEEcCCCCeEEEE
Q 012679 348 HTGACLNSVDTG-------------SQVCALLWNKNERELLSS 377 (458)
Q Consensus 348 ~~~~~~~~~~~~-------------~~v~~~~~s~~~~~l~~~ 377 (458)
.+|+.+..++.. .-.+.+++.|++..++.+
T Consensus 204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 788777666421 236788999988666654
No 492
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.16 E-value=54 Score=32.21 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=81.5
Q ss_pred eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679 270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349 (458)
Q Consensus 270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~ 349 (458)
...+..++|+.+++.+.....++-||--...- ...-......+.++.|.+++..+++. .+|.+ +|....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W------~~~~~~~~~~l~~v~~~~dg~l~l~g----~~G~l-~~S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW------QPHNRASARRIQNMGWRADGGLWLLT----RGGGL-YVSKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcce------EEecCCCccceeeeeEcCCCCEEEEe----CCceE-EEecCC
Confidence 44456678888777776554444455322110 11112234567899999876655543 45554 344444
Q ss_pred CC-----eeEEEeC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE---eCCCCcEEEEEEcCCCCEE
Q 012679 350 GA-----CLNSVDT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL---SGHTSRVLFMAQSPDGCTV 418 (458)
Q Consensus 350 ~~-----~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~---~~h~~~V~~l~~spdg~~l 418 (458)
++ ....... ...+..+.|.+++..+++ | ..|.+.... ..++.-... ..-......+.|.++++-+
T Consensus 310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~--G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~ 385 (398)
T PLN00033 310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA--G-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGF 385 (398)
T ss_pred CCcccccceeecccCCCCcceEEEEEcCCCcEEEE--E-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceE
Confidence 43 2233322 234888999988887766 4 466555543 333322222 2234567889988776666
Q ss_pred EEEeCCCcEEEE
Q 012679 419 ASAAADETLRFW 430 (458)
Q Consensus 419 ~s~s~Dg~i~iW 430 (458)
+ .+.+|.|.-|
T Consensus 386 ~-~G~~G~il~~ 396 (398)
T PLN00033 386 V-LGNDGVLLRY 396 (398)
T ss_pred E-EeCCcEEEEe
Confidence 5 5577877654
No 493
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=81.80 E-value=81 Score=34.02 Aligned_cols=189 Identities=19% Similarity=0.213 Sum_probs=104.9
Q ss_pred CCeEEEEcCCEEEEEEC-CCCCeeeEE-----EecCCCCCEEEEEEc--CCCCEEEEEecC---CeEEEEeCCC--c---
Q 012679 152 SNVLAIALGSTVYLWDA-SDGTTSELV-----TVDDENGPVTSVNWA--PDGRHIAIGLNN---CQVQLWDSTA--N--- 215 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~-~~~~~~~~~-----~~~~h~~~V~~v~~s--~~g~~la~g~~d---g~v~iwd~~~--~--- 215 (458)
.-++++...|.|.+|-. .+++..... .+......|+..++. .+|+.+++++.+ +.|++|.+.- +
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 45899999999999987 344443332 122235567766665 567666665555 6788875321 1
Q ss_pred -----eeeEEec-----C------C-----------CcccEEEEEe-C--------CCeEEEEeC----CCcEEEEEccC
Q 012679 216 -----RQLRTLR-----G------G-----------HRSRVGSLAW-N--------NHILTTGGM----DGLIINNDVRV 255 (458)
Q Consensus 216 -----~~~~~~~-----~------~-----------~~~~v~~l~~-~--------~~~l~sg~~----dg~i~vwd~~~ 255 (458)
+..-.+. . . .-..++.+.| . +.++++.+. ...|.-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 0000110 0 0 1124555655 1 245555442 34789998876
Q ss_pred CCeeEEEE--------------------c-----ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc----e
Q 012679 256 RDHIVETY--------------------R-----GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT----Q 306 (458)
Q Consensus 256 ~~~~~~~~--------------------~-----~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~----~ 306 (458)
....+... . .....|.++....-+..++..-.||+|.++|-.+.+..... .
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 43221111 0 12345777777777889999999999999997776432111 1
Q ss_pred eee---eec------ccccceeEEEecCCCCcEEEEeCCCCCCeEE
Q 012679 307 WLH---RLE------EHTSAVKAIAWCPFQSNLLATGGGGGDRCIK 343 (458)
Q Consensus 307 ~~~---~~~------~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~ 343 (458)
... .+. .+...+..++|+|.+..++... .++.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~---~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID---EDGKTK 345 (753)
T ss_pred CccccccccccccccccCCCCceEEECcccceEEEEe---cCCCce
Confidence 111 110 1112344688999766666554 566644
No 494
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=81.78 E-value=71 Score=33.37 Aligned_cols=243 Identities=11% Similarity=0.127 Sum_probs=123.8
Q ss_pred EEcCCCCEEEEEecCCeEEEEeC-CCceeeEEecCCCcccEEEEEe----C-CCeEEEEeCCCc-EEEEEccCC------
Q 012679 190 NWAPDGRHIAIGLNNCQVQLWDS-TANRQLRTLRGGHRSRVGSLAW----N-NHILTTGGMDGL-IINNDVRVR------ 256 (458)
Q Consensus 190 ~~s~~g~~la~g~~dg~v~iwd~-~~~~~~~~~~~~~~~~v~~l~~----~-~~~l~sg~~dg~-i~vwd~~~~------ 256 (458)
.++|+.+.+-.|=....|.-|=+ .+.+.+..+.-.....|.|+.. + ..+.+.|-.++. -++--+..+
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~ 113 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED 113 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence 56677776666655555555544 3567777766556666777766 1 234444433332 232222211
Q ss_pred ----C--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC-----
Q 012679 257 ----D--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP----- 325 (458)
Q Consensus 257 ----~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p----- 325 (458)
. .....+ .-...|.++.|.++++.+++...+|.|.+||..........+ +. ..+...+.-=.|-+
T Consensus 114 ~~~~~e~~~~~~~-kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~-l~--~~~~~~v~ys~fv~~~~~~ 189 (670)
T PF10395_consen 114 GTVNSETTNEFEL-KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQ-LK--LKSSINVSYSKFVNDFELE 189 (670)
T ss_pred cccCccccceEEE-EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccc-cc--cccccceehhhhhcccccc
Confidence 0 001111 135678899999999999999999999999993332211110 00 01111111102222
Q ss_pred CCCc-EEEEeC-CCCCCeEEEEEC-CCCCeeEEEe----CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE
Q 012679 326 FQSN-LLATGG-GGGDRCIKFWNT-HTGACLNSVD----TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE 398 (458)
Q Consensus 326 ~~~~-ll~s~~-g~~d~~i~lwd~-~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~ 398 (458)
++.. +++.+. ....-+.+++.+ .....+..+. .........|.-+...+..- .++.|.+|++++.+...+
T Consensus 190 ~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l---~~~~i~~ysip~f~~~~t 266 (670)
T PF10395_consen 190 NGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL---SKKTISSYSIPNFQIQKT 266 (670)
T ss_pred cCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE---eCCEEEEEEcCCceEEEE
Confidence 2223 333332 112346778887 1222222222 12222333333333333332 578999999999887766
Q ss_pred EeCC-----C-CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679 399 LSGH-----T-SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441 (458)
Q Consensus 399 ~~~h-----~-~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~ 441 (458)
+.-. . ..+.++.--...+.|+ +.+..|++.|+.-.....+.
T Consensus 267 I~l~~ii~~~~~~~vSl~~~s~nRvLL--s~~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 267 ISLPSIIDKESDDLVSLKPPSPNRVLL--SVNNKIYLLDLKFESILSEF 313 (670)
T ss_pred EEechhhccccccceEeecCCCCeEEE--EcCCEEEEEeehhhhhhhhh
Confidence 5422 1 2233333222334444 35678999998655444443
No 495
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=81.71 E-value=82 Score=34.06 Aligned_cols=117 Identities=12% Similarity=0.136 Sum_probs=73.6
Q ss_pred ccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc----------ccceeEEEecCCCCcEEEEeC
Q 012679 267 NQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH----------TSAVKAIAWCPFQSNLLATGG 335 (458)
Q Consensus 267 ~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h----------~~~v~~l~~~p~~~~ll~s~~ 335 (458)
..+...++|+| +.+.||+....|...|||+.......... +.....+ ...-..+.|.++...+|++
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~-~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~-- 221 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSN-LRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC-- 221 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcc-eeeccCCCccccCCCcccCcceeeEecCCCCEEEEE--
Confidence 34677899998 56799999999999999992221111101 1111111 1233478898877777775
Q ss_pred CCCCCeEEEEECCCCCeeE---EEeCCCCeEEEEEcCC--CCeEEEEecCCCCcEEEEeCCC
Q 012679 336 GGGDRCIKFWNTHTGACLN---SVDTGSQVCALLWNKN--ERELLSSHGFTQNQLTLWKYPS 392 (458)
Q Consensus 336 g~~d~~i~lwd~~~~~~~~---~~~~~~~v~~~~~s~~--~~~l~~~~g~~d~~i~iwd~~~ 392 (458)
....+.++|+.+..... .......|..+.-++. +..++.+ ...|...++..
T Consensus 222 --~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT----s~eiiw~~~~~ 277 (765)
T PF10214_consen 222 --NRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT----SKEIIWLDVKS 277 (765)
T ss_pred --cCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe----cCeEEEEEccC
Confidence 56789999999876533 2233456778887777 3333332 35677777665
No 496
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=80.36 E-value=83 Score=33.35 Aligned_cols=220 Identities=12% Similarity=0.208 Sum_probs=104.2
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC-----CCcccEEEEEeCCC-eEEEEeCCCcEEEEEccCC
Q 012679 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG-----GHRSRVGSLAWNNH-ILTTGGMDGLIINNDVRVR 256 (458)
Q Consensus 183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~-----~~~~~v~~l~~~~~-~l~sg~~dg~i~vwd~~~~ 256 (458)
.+.|-..+||.|.+.+++...+..|.+++-.- ..+....- ..-+.-..+.|... .-+- +..-...+-|..-.
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~f-d~ise~~L~~~dl~ef~khi~VgWgkketqfr-gk~~raqlrdptmp 189 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDKYF-DPISEYHLKKSDLVEFGKHIRVGWGKKETQFR-GKGARAQLRDPTMP 189 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEeccc-cccchhhcchhHHHHhccceEeeecccchhcc-ccchhhhccCCCCc
Confidence 56789999999999888888888898887321 11111110 01112233444210 0000 00001112221111
Q ss_pred Cee-EEEEcccccceEeEEEcCCCCEEEEEECC----CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679 257 DHI-VETYRGHNQEVCGLKWSASGQQLASGGND----NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331 (458)
Q Consensus 257 ~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll 331 (458)
..+ ...+..-...-.-+.|--|..+.+.+... ..+++|.-.. ....... ...+.-..+.|-|.|..+.
T Consensus 190 ~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg-~lds~se------p~~g~e~~LSWkpqgS~~a 262 (1243)
T COG5290 190 YMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREG-QLDSASE------PVTGMEHQLSWKPQGSKYA 262 (1243)
T ss_pred ccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeecccc-ccccccC------CcccchhccccccCCceee
Confidence 000 00000001111235666677776666532 3455665321 1111111 1122234589999765554
Q ss_pred EEeCC-C-CCCeEEEEECC---CCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcE
Q 012679 332 ATGGG-G-GDRCIKFWNTH---TGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRV 406 (458)
Q Consensus 332 ~s~~g-~-~d~~i~lwd~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V 406 (458)
..++. + ..-.+.++.-+ .|+.-........+...+|+-....++.+ ..+.|.+|-..+..-.....-.-..+
T Consensus 263 ti~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~---~~n~~~lwttkNyhWYLK~e~~ip~~ 339 (1243)
T COG5290 263 TIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA---EGNLLKLWTTKNYHWYLKVERQIPGI 339 (1243)
T ss_pred eeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh---hcceEEEEEccceEEEEEEeecCCCc
Confidence 44421 1 11235555432 23332233344557778888877777765 35789999887755443333334456
Q ss_pred EEEEEcCC
Q 012679 407 LFMAQSPD 414 (458)
Q Consensus 407 ~~l~~spd 414 (458)
..+.|+|.
T Consensus 340 s~vkwhpe 347 (1243)
T COG5290 340 SYVKWHPE 347 (1243)
T ss_pred ceeeeccc
Confidence 66778874
No 497
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.97 E-value=23 Score=37.14 Aligned_cols=90 Identities=14% Similarity=0.235 Sum_probs=50.2
Q ss_pred EEEEcCCCCEEEEEecCC-----eEEEEeCCC---ceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCe
Q 012679 188 SVNWAPDGRHIAIGLNNC-----QVQLWDSTA---NRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDH 258 (458)
Q Consensus 188 ~v~~s~~g~~la~g~~dg-----~v~iwd~~~---~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~ 258 (458)
.++|-|+|..+++-..|| .|.++.-+. |+. .+..+....+..++|| ...+........|.+|-...-..
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef--~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhW 328 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEF--DLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHW 328 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCc--cccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEE
Confidence 478999999999977665 355554221 111 1122244556677886 22333334556788997654332
Q ss_pred eEEEEcccccceEeEEEcCCCC
Q 012679 259 IVETYRGHNQEVCGLKWSASGQ 280 (458)
Q Consensus 259 ~~~~~~~h~~~v~~l~~spd~~ 280 (458)
.++. .-.-..+.-+.|+|...
T Consensus 329 YLK~-e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 329 YLKV-ERQIPGISYVKWHPEEK 349 (1243)
T ss_pred EEEE-eecCCCcceeeeccccC
Confidence 2211 12234566789999543
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=79.70 E-value=1e+02 Score=33.82 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=70.5
Q ss_pred CCCccccceeeccCCCeEEEEcCCEEEEEEC-CCCCeeeEEEecCCCCCEEEEEEcCCC------CEEEEEecCCeEEEE
Q 012679 138 LVDDYYLNLLDWGSSNVLAIALGSTVYLWDA-SDGTTSELVTVDDENGPVTSVNWAPDG------RHIAIGLNNCQVQLW 210 (458)
Q Consensus 138 ~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~-~~~~~~~~~~~~~h~~~V~~v~~s~~g------~~la~g~~dg~v~iw 210 (458)
...+.++.+...+...++.+-.++.+.-+-. .++++....+-..-...|.|+++.+++ ++++.|+.|+.++++
T Consensus 536 ~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vrii 615 (1205)
T KOG1898|consen 536 TPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRII 615 (1205)
T ss_pred CCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEE
Confidence 3444455555656666666666676665554 345544443222335678999998865 579999999999999
Q ss_pred eCCCceeeEEecC-CCcccEEEEEe-----CC------CeEEEEeCCCcEEEE
Q 012679 211 DSTANRQLRTLRG-GHRSRVGSLAW-----NN------HILTTGGMDGLIINN 251 (458)
Q Consensus 211 d~~~~~~~~~~~~-~~~~~v~~l~~-----~~------~~l~sg~~dg~i~vw 251 (458)
.+.....+..+.. +-..++.++.. ++ -+|.+|-.+|.+.-.
T Consensus 616 sL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 616 SLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred EecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 9886666665542 13344444444 22 256677777766433
No 499
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=79.16 E-value=32 Score=32.81 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=55.4
Q ss_pred eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe---eEEEe-----CCCCeEEEEEcCC---CCeEEEEecCC-----
Q 012679 318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---LNSVD-----TGSQVCALLWNKN---ERELLSSHGFT----- 381 (458)
Q Consensus 318 v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~---~~~~~-----~~~~v~~~~~s~~---~~~l~~~~g~~----- 381 (458)
.++|+|.|++ .++++- ..|.|++++ ..+.. +..+. .......++++|+ ..+++++....
T Consensus 4 P~~~a~~pdG-~l~v~e---~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 4 PRSMAFLPDG-RLLVAE---RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp EEEEEEETTS-CEEEEE---TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred ceEEEEeCCC-cEEEEe---CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 4689999985 555554 689999999 44443 22221 1235789999994 34444433211
Q ss_pred C--CcEEEEeCCCc-------eee-EEEeC---CCCcEEEEEEcCCCCEEEEEeCCCc
Q 012679 382 Q--NQLTLWKYPSM-------VKM-AELSG---HTSRVLFMAQSPDGCTVASAAADET 426 (458)
Q Consensus 382 d--~~i~iwd~~~~-------~~~-~~~~~---h~~~V~~l~~spdg~~l~s~s~Dg~ 426 (458)
. ..|.-|.+... +.+ ..+.. ....-..|+|.|||.+.++.+..+.
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 1 23444444332 112 12222 2233467999999987777765443
No 500
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=78.69 E-value=80 Score=32.10 Aligned_cols=190 Identities=13% Similarity=0.098 Sum_probs=99.8
Q ss_pred CCeEEEEcCCEEEEEECCCCCeeeEEEecCC-CCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCceeeEEecCCCccc
Q 012679 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDE-NGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR 228 (458)
Q Consensus 152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h-~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~ 228 (458)
+.+-.+..++.+.+-+.+ ......+... ...+-.++-+| .+..+-.....|.+.+-+-.++..++....-....
T Consensus 301 GsLWv~t~~giv~~~~a~---w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~n 377 (671)
T COG3292 301 GSLWVGTYGGIVRYLTAD---WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMN 377 (671)
T ss_pred CCEeeeccCceEEEecch---hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccc
Confidence 566777666666655432 1111111111 11122222222 23334444445566666667777776654323344
Q ss_pred EEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEE-EcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcce
Q 012679 229 VGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVET-YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQ 306 (458)
Q Consensus 229 v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 306 (458)
|+.+.++ ...+-.|+...-+..|+..+....... -....++|+.+-=.|+++ |..|+.+|.++. +.+.........
T Consensus 378 it~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln 455 (671)
T COG3292 378 ITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLN 455 (671)
T ss_pred cchhhhccCCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhcccc
Confidence 5555553 456666766645555665542211111 123467888888888888 888888887664 222222211100
Q ss_pred eeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe
Q 012679 307 WLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC 352 (458)
Q Consensus 307 ~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~ 352 (458)
..........|..+...|+++..+++|. .|..|+.+....
T Consensus 456 -~~~~~l~~s~~~~lg~~~~g~Lw~a~g~-----gva~~~sq~~~~ 495 (671)
T COG3292 456 -PGSHGLDGSRVEQLGLGPDGRLWLAAGS-----GVAAWESQRRMF 495 (671)
T ss_pred -cccCcCCcchhhhhccCCCCceEEEecc-----eeeeecccccee
Confidence 0111112345788999998888888764 357787665433
Done!